Citrus Sinensis ID: 040987
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | 2.2.26 [Sep-21-2011] | |||||||
| Q7ZVR1 | 832 | WD repeat-containing prot | yes | no | 0.715 | 0.655 | 0.265 | 7e-47 | |
| Q8IWA0 | 830 | WD repeat-containing prot | yes | no | 0.734 | 0.674 | 0.257 | 3e-44 | |
| Q6DFC6 | 832 | WD repeat-containing prot | N/A | no | 0.727 | 0.665 | 0.268 | 6e-44 | |
| O13878 | 806 | U3 small nucleolar RNA-as | yes | no | 0.729 | 0.689 | 0.205 | 7e-16 | |
| Q02931 | 896 | NET1-associated nuclear p | yes | no | 0.062 | 0.053 | 0.479 | 3e-06 | |
| P49695 | 742 | Probable serine/threonine | no | no | 0.267 | 0.274 | 0.241 | 7e-06 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.440 | 0.247 | 0.23 | 1e-05 | |
| Q13112 | 559 | Chromatin assembly factor | no | no | 0.145 | 0.198 | 0.282 | 5e-05 | |
| P62884 | 312 | Guanine nucleotide-bindin | no | no | 0.272 | 0.666 | 0.225 | 8e-05 | |
| P62883 | 312 | Guanine nucleotide-bindin | N/A | no | 0.272 | 0.666 | 0.225 | 8e-05 |
| >sp|Q7ZVR1|WDR75_DANRE WD repeat-containing protein 75 OS=Danio rerio GN=wdr75 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 189 bits (480), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 172/647 (26%), Positives = 290/647 (44%), Gaps = 102/647 (15%)
Query: 66 KMIRGGRSYVS-SPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVP 124
+++R G S ++ PP S+D + +L + ++V ++ST T + +L+GH VT +
Sbjct: 8 RVVRCGGSKINFRPPIISHDSRFVLCVSGDSVKVYSTRTEEWLHNLQGHNNQVTGI---- 63
Query: 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSM--------VIPSLLRQ 176
A PA ++ Y + S DGT+K WDF L+KT + + ++S+ VI ++
Sbjct: 64 AFNPANQLQVY--SCSADGTVKLWDFIDGILIKTFVIGYPLYSLYVSEKHEGVIFLIVSM 121
Query: 177 PAQSDEKPPKLFAY-------LSVEDTRETTKSHKKEPRPN-TMNGRICKCNLTESRLAG 228
S+ + +L A VE +T + K P P+ T GR G
Sbjct: 122 VTDSNNESFQLVAVHLPKSAEQEVEAKELSTVASKISPNPSCTAFGR------------G 169
Query: 229 GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288
G +A + Q+ YF +++ K D +A + T +A
Sbjct: 170 GEFIAFSRHLQL------NVYFFRKQKTYSFSLKATDKKAGK-----------NAFTCVA 212
Query: 289 FHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348
HPT +A+G G+I +WR F + T K
Sbjct: 213 CHPTDDCIASGHEDGKIRLWRNFNHKKEYTYSTK-------------------------- 246
Query: 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL-DTGKKKFLPRIGSPLLYFTESPDPS 407
HWH V+ L F+ +G+ L SGG E VLV WQ D KK+FLPR+G + + + S D
Sbjct: 247 -HWHHDAVNHLCFTPEGSNLLSGGIESVLVQWQYGDMSKKEFLPRLGGSISHVSASADGQ 305
Query: 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467
L + +DN++ +++ S ++ I G+ + D+ + + L +
Sbjct: 306 LFCTAHSDNKISIIE-SSFKVSGLIQGLV-------RGDAVSTDLMIDPRSKALVLNGKP 357
Query: 468 YCIHFYSLLDDRGISEVQVCERN--HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525
+ FYSLL D+ + + + ++ ++ G D VV V GS ++TV+ + +
Sbjct: 358 GHLQFYSLLRDKHLYNLDIVQQEYIYEAGLDQFEVVKAV-FDVKGSWLATVEERGHKTSD 416
Query: 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA--VSSSYGGDFKVWI 583
LK W + F L+T V E H + I+++ F + V+++ G FK W
Sbjct: 417 LEFF-LKLWAFDETTQSFVLNTTVTEAHSER-ITSMCFSSSEETTMLVTTALDGQFKAWC 474
Query: 584 CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVA 643
+ QQ + WSC VGSY FSADGS+LAV+ + V+TLW P+ L+
Sbjct: 475 QTADAQQA---QNYWSCDFVGSYHNLKPKNCCFSADGSILAVSFQEVLTLWSPETWELLT 531
Query: 644 VIGETLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688
+ + I ++ F + S+YL++T+ +K L WN+ ++ WS
Sbjct: 532 TLCQPPGEIRDLCFGRLSCSKYLLSTT--TKNLLCCWNLLTCALEWS 576
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Danio rerio (taxid: 7955) |
| >sp|Q8IWA0|WDR75_HUMAN WD repeat-containing protein 75 OS=Homo sapiens GN=WDR75 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 167/648 (25%), Positives = 289/648 (44%), Gaps = 88/648 (13%)
Query: 64 NSKMIRGGRSYVSSPPA-FSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIV 122
N +++R G S ++ A FS D K + + + V ++ST T + L GH+ VT + +
Sbjct: 6 NIRVVRCGGSELNFRRAVFSADSKYIFCVSGDFVKVYSTVTEECVHILHGHRNLVTGIQL 65
Query: 123 VPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQS-- 180
P + ++ SLDGTIK WD+ L+KT V + ++ L Q S
Sbjct: 66 NPNNHLQL------YSCSLDGTIKLWDYIDGILIKTFIVGCKLHALFT---LAQAEDSVF 116
Query: 181 ---DEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237
+++ P +F +SV K P+ ++ E++ V +
Sbjct: 117 VIVNKEKPDIFQLVSV-----------KLPKSSSQE--------VEAKELSFVLDYINQS 157
Query: 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR--KITLHHTKKLTVLAFHPTQRI 295
P+ I + G Y ++ L ++ R + + H T +A HPT+
Sbjct: 158 PKCIAFGNEGVYVAAVREFYLSVYFFKKKTTSRFTLSSSRNKKHAKNNFTCVACHPTEDC 217
Query: 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355
+A+G + G+I +WR F D D K T HWH
Sbjct: 218 IASGHMDGKIRLWRNFYD------DKKYTY---------------------TCLHWHHDM 250
Query: 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPDPSLSSISCA 414
V L FS G L SGG+E VLV W+ T K K+FLPR+G+ + + + SP L S +
Sbjct: 251 VMDLAFSVTGTSLLSGGRESVLVEWRDATEKNKEFLPRLGATIEHISVSPAGDLFCTSHS 310
Query: 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474
DN++ ++ ++E I G+ + + + + + + L + + FYS
Sbjct: 311 DNKIIIIHR-NLEASAVIQGLV-------KDRSIFTGLMIDPRTKALVLNGKPGHLQFYS 362
Query: 475 LLDDRGISEVQVCERNH-QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533
L D+ + + + ++ + + + +T A G+ ++TV+ + +E L +K
Sbjct: 363 LQSDKQLYNLDIIQQEYINDYGLIQIELTKAAFGCFGNWLATVEQRQEKETELELQ-MKL 421
Query: 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA----VSSSYGGDFKVWICNDELQ 589
W+ + + F L+T + PH D I+A+ F ++ V++S G FKVWI D+
Sbjct: 422 WMYNKKTQGFILNTKINMPHEDC-ITALCFCNAEKSEQPTLVTASKDGYFKVWILTDD-- 478
Query: 590 QKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGE 647
D+ ++ GW+C VGSY K T FS DGS+LAV+ E ++T+WD L +
Sbjct: 479 -SDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSVTWELKCTFCQ 537
Query: 648 TLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693
I ++ F + S+YL+ + L WN+ ++ W+ L+V
Sbjct: 538 RAGKIRHLCFGRLTCSKYLLGAT--ENGILCCWNLLSCALEWNAKLNV 583
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Homo sapiens (taxid: 9606) |
| >sp|Q6DFC6|WDR75_XENLA WD repeat-containing protein 75 OS=Xenopus laevis GN=wdr75 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 179 bits (455), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 172/641 (26%), Positives = 288/641 (44%), Gaps = 87/641 (13%)
Query: 66 KMIRGGRSYVS-SPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVP 124
+++R G S + FS D K L+ + + + ++STST I +L+GH+ VT + + P
Sbjct: 8 RVVRSGGSKLDYRRSVFSADGKYLICVSGDFIKVYSTSTEECIHALQGHRKLVTGIELNP 67
Query: 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKT--IDVKF-SIFSMVIPSLLRQPAQSD 181
+ ++ SLDGTIK WDF+ L+KT I KF S+++ L+
Sbjct: 68 KNHLQL------YSCSLDGTIKLWDFTDGILIKTFLIGCKFLSLYTSATDDLV------- 114
Query: 182 EKPPKLFAY-LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE-PQ 239
FA L D+ + K P+ + +C E V + ++ P+
Sbjct: 115 ------FAVTLKNNDSASSQLVSVKLPKSASQ-----ECEAKEI----SVIIEDVSHLPK 159
Query: 240 VITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKL-TVLAFHPTQRIVAA 298
I Y K L I+ ++ R ++ + + TV+A HP++ +A
Sbjct: 160 CTAIGRQCLYVASVKGVHLSIYYFKTKKSFRFSLKATSKKGANNIFTVVACHPSEDCIAT 219
Query: 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358
G + GRI +WR F + T T+ HWH V
Sbjct: 220 GHMDGRIRLWRNFNHKKEYTY---------------------------TSLHWHHDSVMD 252
Query: 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQ 417
L FS+ G L SGG E VLV W + +KK FLPR+G+ + + + SP +L S DN+
Sbjct: 253 LAFSAQGTKLLSGGVESVLVQWPYGSEEKKEFLPRLGAAIEHISVSPHGTLYCTSHTDNK 312
Query: 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477
+ ++ S+++ I G+ + GL D N + L + + FYSLL+
Sbjct: 313 ISIIDT-SLKVSGIIQGLLKGTVVK---TGLIVDPRSN----ALVLNGKPGHLQFYSLLN 364
Query: 478 DRGISEVQVCERN--HQPGDDVTVVVTLVALSQDGSLMSTVD-IKLAEEGIGSLVCLKFW 534
DR + + + ++ HQ G +V + S G ++TV+ ++ E+ + + +K W
Sbjct: 365 DRHLYNLDIVQQEFIHQAGLQYMDLVK-ASFSSTGRWLATVEELQGGEDSMDLEMQMKLW 423
Query: 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA------VSSSYGGDFKVWICNDEL 588
+++ F L+T + PH D I+++ F + V++ G FKVW+ N+
Sbjct: 424 EYQDKSQSFVLNTTINRPHEDH-ITSLCFRDEGNSEKEAPTLVTTGKDGLFKVWMLNNNY 482
Query: 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGET 648
QSS W C VG Y K T FS DGS+LAV+ + +IT+W+ L +
Sbjct: 483 DIYK-QSSSWLCDFVGGYHKNQATNCCFSEDGSLLAVSFDEIITVWESSTWDLKQTFCQP 541
Query: 649 LTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISW 687
I N+ F + S+YLVA++ + + WN+ ++ W
Sbjct: 542 PGKIRNLCFGRMSCSKYLVAST--NNGFICCWNLLTCALEW 580
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Xenopus laevis (taxid: 8355) |
| >sp|O13878|UTP17_SCHPO U3 small nucleolar RNA-associated protein 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=utp17 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 138/670 (20%), Positives = 266/670 (39%), Gaps = 114/670 (17%)
Query: 70 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129
GGR P +SND K + + + IFS TG I+ + + V +P
Sbjct: 29 GGRLVSKIPAVYSNDNKFVFLTYDTFIGIFSLITGDCINRIFFPNNLANLLPVAVLLSPE 88
Query: 130 TKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSM-----VIPSLLRQPAQSDEKP 184
Y S G + D+S ELL+T+++ + + ++ ++ PA
Sbjct: 89 NAFELYVIFQS--GYVCVHDWSNSELLRTMEISTRVHAASFSGKLLFAVTDTPASDSASS 146
Query: 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITIS 244
F ++ + S KE + + K N LA +L + V I+
Sbjct: 147 QDRFTLYAL------SPSTSKEGSSILIPTFVSKFN---EFLALDSSLRDNNLATVAVIT 197
Query: 245 SSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304
+ F + +K ++R + R+ + +KLT ++ A D G+
Sbjct: 198 TDKAIFSLNVPKK--------KRSQRWIHREHLFNMPQKLTNVSL--CGSACAVSDDEGK 247
Query: 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364
I + +N ++NE+ P + HWH + ++ L ++ +
Sbjct: 248 IHV-----------------INDISNEKFNPQI-----------LHWHANPLNGLSWALN 279
Query: 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424
G YL SGG+EGVLV+WQ++T ++FLPR+GS +L S D ++ DN + +++
Sbjct: 280 GEYLLSGGQEGVLVLWQMETSHRQFLPRLGSSILSIATSHDSDSYALHLGDNSLVVIRAV 339
Query: 425 SMEIIRSISGIKL----------PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHF-- 472
+ +SGI P ++ +GL + + + +G L+ + + ++ H
Sbjct: 340 DLAEQIHVSGINSFESKYLTSTGPKNTSKQLQGLVQFSSVSPNGELLLMSSSSFNGHSVS 399
Query: 473 ---YSLLDDRGISEVQVCERNH----QPGDDVT------VVVTLVALSQDGSLMSTVD-- 517
Y L D I + + ++ + DD T V V S++G ++T+D
Sbjct: 400 VQEYDLTKDSTIRKFEAARYSYSSVSKNSDDATSLDNGHVGSVAVTSSRNGLYIATIDTW 459
Query: 518 -IKLAEEGIGSL--VCLKFWVSGTQNKEFTLSTIVYEPHRDAG-ISAVAFHPNRRAAVSS 573
+ +E ++ LKFW + K + L T + PH + ++A+ + ++
Sbjct: 460 CTNIIDEQQRNVKQTALKFWQFDSVQKTWVLMTRIDNPHGNLEVVTALKMMTSSNRFITV 519
Query: 574 SYGGDFKVWICNDELQQKDLQSSGWSC---------HAVGSYKKKAMTAAAF--SADGSV 622
++W SS W C H+ S K++ + A S D S+
Sbjct: 520 GTDATLRIWALLP-------GSSAWKCVAIHHFANTHSQASIKQRYGFSKALTCSLDDSI 572
Query: 623 LAVAAETVITLWDPDRNVLVAVI----GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVW 678
+ + + + + ++ + G L N F+ + ++ S+ +L VW
Sbjct: 573 IGFGYGSCMHFINSETLEEISTVDLPHGGQLE---NAQFLNAEHCVII----SQRRLLVW 625
Query: 679 NMSKLSISWS 688
N+ S+ W+
Sbjct: 626 NVISASVQWT 635
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Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q02931|UTP17_YEAST NET1-associated nuclear protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NAN1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%)
Query: 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL 398
WH V L FS DG+YL SGG E V+ +WQL+T ++FLPR+ ++
Sbjct: 295 WHIDSVLSLSFSHDGSYLLSGGWEKVMSLWQLETNSQQFLPRLNGIII 342
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Involved in nucleolar processing of pre-18S ribosomal RNA. Required for optimal pre-ribosomal RNA transcription by RNA polymerase I together with a subset of U3 proteins required for transcription (t-UTPs). Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 53.5 bits (127), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 101/257 (39%), Gaps = 53/257 (20%)
Query: 260 IWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATN 319
+W V E ER V HT + +AF P +VA+G G +W AT
Sbjct: 527 LWDVAAAE-ERAVFEG----HTHYVLDIAFSPDGSMVASGSRDGTARLW------NVATG 575
Query: 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV 379
L H V + FS DG+ + SG ++G + +
Sbjct: 576 TEHAVLK------------------------GHTDYVYAVAFSPDGSMVASGSRDGTIRL 611
Query: 380 WQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438
W + TGK++ L ++ SPD S+ + +D+ VHL + S E + + G
Sbjct: 612 WDVATGKERDVLQAPAENVVSLAFSPDGSM-LVHGSDSTVHLWDVASGEALHTFEG---- 666
Query: 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498
+ R +AF+ DG L+A +++ I + D E E + +P V
Sbjct: 667 ------HTDWVRAVAFSPDGALLASGSDDRTIRLW---DVAAQEEHTTLEGHTEPVHSVA 717
Query: 499 V---VVTLVALSQDGSL 512
TL + S+DG++
Sbjct: 718 FHPEGTTLASASEDGTI 734
|
May play a regulatory role during the complex growth cycle and in secondary metabolite production. Thermomonospora curvata (taxid: 2020) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 92/400 (23%), Positives = 147/400 (36%), Gaps = 64/400 (16%)
Query: 252 IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW--- 308
+K+ I + VEAE + H + +AF + VA+G I IW
Sbjct: 812 FKKEEPGWISTISVVEAEWNACTQTLEGHGSSVLSVAFSADGQRVASGSDDKTIKIWDTA 871
Query: 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD--------ADLCT-TWHWHPSEVSVL 359
G G +T + + + + ER +D + CT T H V +
Sbjct: 872 SGTGTQTLEGHGGSVWSVAFSPDRERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSV 931
Query: 360 IFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPDPSLSSISCADNQV 418
FS DG + SG + + +W +G + L GS +L SPD + D +
Sbjct: 932 AFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTI 991
Query: 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478
+ S +++ G + G +AF+ DG VA +++ I + D
Sbjct: 992 KIWDTASGTCTQTLEG----------HGGSVWSVAFSPDGQRVASGSDDKTIKIW---DT 1038
Query: 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW--VS 536
+ Q E + V V S DG +++ +K W VS
Sbjct: 1039 ASGTCTQTLEGHGG-------WVQSVVFSPDGQRVASGSDDHT---------IKIWDAVS 1082
Query: 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS 596
GT T E H D+ + +VAF P+ + S S G K+W + L+
Sbjct: 1083 GT-------CTQTLEGHGDS-VWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGH 1134
Query: 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWD 635
G H+V AFS DG +A + + I +WD
Sbjct: 1135 GGWVHSV-----------AFSPDGQRVASGSIDGTIKIWD 1163
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q13112|CAF1B_HUMAN Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 27/138 (19%)
Query: 260 IWKV---PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316
IWKV PD +A + + HTK + V+ F PT I+A+G IL+W+
Sbjct: 43 IWKVEKGPDGKAIVEFLSNLA-RHTKAVNVVRFSPTGEILASGGDDAVILLWK------- 94
Query: 317 ATNDNKMNLNLMNNEEERPGVRDNDDADL-------CTTWHWHPSEVSVLIFSSDGAYLY 369
NDNK E E+ +D D+A L T H +V + +++DG +
Sbjct: 95 -VNDNK--------EPEQIAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWATDGNLMA 145
Query: 370 SGGKEGVLVVWQLDTGKK 387
S + ++W + G+K
Sbjct: 146 SASVDNTAIIWDVSKGQK 163
|
Complex that is thought to mediate chromatin assembly in DNA replication and DNA repair. Assembles histone octamers onto replicating DNA in vitro. CAF-1 performs the first step of the nucleosome assembly process, bringing newly synthesized histones H3 and H4 to replicating DNA; histones H2A/H2B can bind to this chromatin precursor subsequent to DNA replication to complete the histone octamer. The CCR4-NOT complex functions as general transcription regulation complex. Homo sapiens (taxid: 9606) |
| >sp|P62884|GBLP_LEIIN Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum GN=LinJ28.2880 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314
R + +W + + + +R ++ HTK + +AF P R++ + I +W G+
Sbjct: 86 DRSIRMWDLRNGQCQRKFLK-----HTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGEC 140
Query: 315 TFA----TNDNKMNLNLMNNEEERP----GVRDND------DADLCT-TWHWHPSEVSVL 359
+++ ++ + E P G DN + C T H + VS +
Sbjct: 141 MHEFLRDGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTV 200
Query: 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVH 419
S DG+ SGGK+G ++W L TG++ F + SP+ SP+ ++ + +
Sbjct: 201 TVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVA-TERSLS 259
Query: 420 LLKMPSMEIIRSIS--GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477
+ + S +I ++ G K P E C IA++ DG + ++ I +S+ D
Sbjct: 260 VYDLESKAVIAELTPDGAK-----PSE----CISIAWSADGNTLYSGHKDNLIRVWSISD 310
|
Leishmania infantum (taxid: 5671) |
| >sp|P62883|GBLP_LEICH Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 103/240 (42%), Gaps = 32/240 (13%)
Query: 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314
R + +W + + + +R ++ HTK + +AF P R++ + I +W G+
Sbjct: 86 DRSIRMWDLRNGQCQRKFLK-----HTKDVLAVAFSPDDRLIVSAGRDNVIRVWNVAGEC 140
Query: 315 TFA----TNDNKMNLNLMNNEEERP----GVRDND------DADLCT-TWHWHPSEVSVL 359
+++ ++ + E P G DN + C T H + VS +
Sbjct: 141 MHEFLRDGHEDWVSSICFSPSLEHPIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTV 200
Query: 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVH 419
S DG+ SGGK+G ++W L TG++ F + SP+ SP+ ++ + +
Sbjct: 201 TVSPDGSLCASGGKDGAALLWDLSTGEQLFKINVESPINQIAFSPNRFWMCVA-TERSLS 259
Query: 420 LLKMPSMEIIRSIS--GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477
+ + S +I ++ G K P E C IA++ DG + ++ I +S+ D
Sbjct: 260 VYDLESKAVIAELTPDGAK-----PSE----CISIAWSADGNTLYSGHKDNLIRVWSISD 310
|
Leishmania chagasi (taxid: 44271) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| 224126109 | 812 | predicted protein [Populus trichocarpa] | 0.818 | 0.768 | 0.749 | 0.0 | |
| 224142241 | 811 | predicted protein [Populus trichocarpa] | 0.817 | 0.768 | 0.741 | 0.0 | |
| 255585028 | 807 | wd40 protein, putative [Ricinus communis | 0.813 | 0.768 | 0.714 | 0.0 | |
| 449457177 | 810 | PREDICTED: WD repeat-containing protein | 0.816 | 0.767 | 0.680 | 0.0 | |
| 449502945 | 810 | PREDICTED: LOW QUALITY PROTEIN: WD repea | 0.816 | 0.767 | 0.678 | 0.0 | |
| 225451403 | 815 | PREDICTED: WD repeat-containing protein | 0.816 | 0.763 | 0.694 | 0.0 | |
| 3004552 | 812 | unknown protein [Arabidopsis thaliana] | 0.813 | 0.763 | 0.646 | 0.0 | |
| 21539489 | 804 | unknown protein [Arabidopsis thaliana] | 0.813 | 0.771 | 0.646 | 0.0 | |
| 30680505 | 804 | transducin/WD-40 repeat-containing prote | 0.813 | 0.771 | 0.646 | 0.0 | |
| 297832610 | 803 | transducin family protein [Arabidopsis l | 0.814 | 0.773 | 0.647 | 0.0 |
| >gi|224126109|ref|XP_002329663.1| predicted protein [Populus trichocarpa] gi|222870544|gb|EEF07675.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/631 (74%), Positives = 542/631 (85%), Gaps = 7/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MIRGGRSYV SPPAFSND KRLLVCT+N+V+IFST+TGL + SL+GH A VT VIVVPAS
Sbjct: 1 MIRGGRSYVLSPPAFSNDAKRLLVCTANSVTIFSTATGLPVLSLDGHTALVTAVIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
TPA+KIL YCWTASLDGTI+YWDFSVPEL+K I+V I SMVIPSLL Q A++++K PK
Sbjct: 61 TPASKILCYCWTASLDGTIRYWDFSVPELIKIINVNLPIISMVIPSLLSQTAETNDKSPK 120
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
FAYLSVE+T+E K K R G+I KCNLT SR+AGG+TL+E K+P++IT+SSS
Sbjct: 121 TFAYLSVENTKEPEKESGKALR-----GQIKKCNLTNSRMAGGMTLSETKQPEIITVSSS 175
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
GKYFGI+ +RKL IWKVP E+ER V++KITLHHTK + VLAFHPTQRIVAAGDVTGRIL
Sbjct: 176 GKYFGIQFKRKLRIWKVPTAESERAVVKKITLHHTKNMNVLAFHPTQRIVAAGDVTGRIL 235
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWRGFGDRTFA D ++ L NNEEERPGVR +DDAD CTTWHWH +EV+VL FSSDGA
Sbjct: 236 IWRGFGDRTFADGDGLVSRKLTNNEEERPGVRGDDDADSCTTWHWHSAEVNVLFFSSDGA 295
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YLYSGGKEGVLVVWQLDTG+KKFLPRIGSPLL+FT+SPDPSLSSISCADNQ+HLLKMPSM
Sbjct: 296 YLYSGGKEGVLVVWQLDTGRKKFLPRIGSPLLWFTDSPDPSLSSISCADNQIHLLKMPSM 355
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
EI++SISGIKLPC PE GL IAF+ + GLVALR ENYCI YSL DDRGISEV V
Sbjct: 356 EILKSISGIKLPCSFPEMCNGLQSGIAFDCNAGLVALRTENYCIQLYSLFDDRGISEVVV 415
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERNHQPGD+VTVVVTL LS DGS+MST ++KL EEG+G LVCLKFW G+QNKEF+LS
Sbjct: 416 CERNHQPGDEVTVVVTLAVLSLDGSMMSTAEVKLPEEGLGGLVCLKFWALGSQNKEFSLS 475
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--LQSSGWSCHAVG 604
TIVYEPHRDAGISA+AFHP R AVSSSYGGDFKVW+CN+ +Q+ D L +SGW+CHAVG
Sbjct: 476 TIVYEPHRDAGISAIAFHPTRPMAVSSSYGGDFKVWVCNNGIQEMDKPLPNSGWTCHAVG 535
Query: 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664
SYKKK MTAA FS+DGSVLAVAAETVITLWD D+N+LVAVIGETL P++N++F G SEYL
Sbjct: 536 SYKKKPMTAATFSSDGSVLAVAAETVITLWDADKNILVAVIGETLMPVVNLAFAGKSEYL 595
Query: 665 VATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695
V+ SWGSKPQLS+W+MSKLS+SWSY+LHVE
Sbjct: 596 VSASWGSKPQLSIWSMSKLSVSWSYMLHVEA 626
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142241|ref|XP_002324467.1| predicted protein [Populus trichocarpa] gi|222865901|gb|EEF03032.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/631 (74%), Positives = 539/631 (85%), Gaps = 8/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MIRGGR+YVSSPPAFSND KRLLVC +N+VSIFST+TGL ++SL+GH+A VT VIVVPAS
Sbjct: 1 MIRGGRNYVSSPPAFSNDAKRLLVCAANSVSIFSTATGLPVASLDGHRALVTAVIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
TPA+KIL YCWTASLDGTI+YWDFSVPEL+K I+V I SMVIPSLL Q +++EK K
Sbjct: 61 TPASKILCYCWTASLDGTIRYWDFSVPELIKIINVNSPIISMVIPSLLCQTTENNEKSLK 120
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
FAYLSVE+T+E K K + G+I KCNLT+ R+AGGVTL E K+P++IT+S+S
Sbjct: 121 SFAYLSVENTKEAEKESTK-----VLRGQIKKCNLTDFRMAGGVTLTETKQPEIITVSAS 175
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
GKYFGIR + KL IWKVP E+ER V++KITLHHTK +TVLAFHP QRI+AAGDVTGRIL
Sbjct: 176 GKYFGIRFKCKLQIWKVPTTESERAVVKKITLHHTKNMTVLAFHPNQRIIAAGDVTGRIL 235
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWRGFGDRTF +D + + MNN EERPGVR +DDAD CTTWHWH +EV+VL FS DGA
Sbjct: 236 IWRGFGDRTFVDDDRLVGVRSMNNGEERPGVRGDDDADSCTTWHWHSAEVNVLFFSLDGA 295
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL+FT SPDPSLSS+SCADNQ+HLLKMPSM
Sbjct: 296 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLWFTNSPDPSLSSVSCADNQIHLLKMPSM 355
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
EI++SISGIKLPC PE Y GL IAF+ + GLVAL ENYCI YSLLDDRGISEVQV
Sbjct: 356 EILKSISGIKLPCSFPEMYNGLRSGIAFDRNAGLVALPTENYCIQLYSLLDDRGISEVQV 415
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERNHQPGD+VTVVVTL LS DGS+MST ++KL EEG+G LVCLKFW G+Q KEF+L+
Sbjct: 416 CERNHQPGDEVTVVVTLAVLSLDGSMMSTAEVKLPEEGLGGLVCLKFWAFGSQ-KEFSLT 474
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--LQSSGWSCHAVG 604
TIVYEPHRDAGISA+AFHP R AVSSSYGGDFKVWICN ++Q D L +SGW+CHAVG
Sbjct: 475 TIVYEPHRDAGISAIAFHPTRPMAVSSSYGGDFKVWICNKGIRQVDEPLPNSGWTCHAVG 534
Query: 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664
SYKKK+MTAA FS+DGSVLAVAAETVITLWD D+N+LVAVIG+TLTPI+N+SF G+SEYL
Sbjct: 535 SYKKKSMTAATFSSDGSVLAVAAETVITLWDADKNILVAVIGDTLTPIVNLSFAGTSEYL 594
Query: 665 VATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695
V+ SWG KPQLSVW+MSKLSI+WSY+LH+E
Sbjct: 595 VSASWGLKPQLSVWSMSKLSIAWSYMLHIEA 625
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585028|ref|XP_002533224.1| wd40 protein, putative [Ricinus communis] gi|223526967|gb|EEF29164.1| wd40 protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/631 (71%), Positives = 529/631 (83%), Gaps = 11/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MI GG+SYV+SPPAFSND KRLLVC+ N+VSIFST+TGLQ++SLEGH A VT VIVVPA+
Sbjct: 1 MITGGKSYVTSPPAFSNDAKRLLVCSGNSVSIFSTATGLQVASLEGHTALVTRVIVVPAT 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
+ KIL YCWTASLDGTI+YWDFSVPEL+KT+D+KF IFSMVIPSLL Q A+++EK K
Sbjct: 61 S---KILCYCWTASLDGTIRYWDFSVPELIKTVDIKFPIFSMVIPSLLSQQAETNEKRSK 117
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
LFAY+S+E+T+ET E + ++ G I KCNLT+SRL GGVTL E K+PQ ITIS S
Sbjct: 118 LFAYVSIENTKET------EDQSKSLRGLIKKCNLTDSRLLGGVTLTETKQPQFITISPS 171
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
GKYFGI +RKL IW VP ++ER +++KITLHHT+ +TV+AFHPTQ+IVAAGDVTGRIL
Sbjct: 172 GKYFGIWTKRKLHIWIVPSTDSERAIVKKITLHHTRNMTVVAFHPTQKIVAAGDVTGRIL 231
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWRGFG+R+F ND M+ MNN+EERPGVR +DDA+ CTTWHWHPSEV+VL FSSDGA
Sbjct: 232 IWRGFGNRSFGVNDILMSGISMNNDEERPGVRGDDDAESCTTWHWHPSEVNVLSFSSDGA 291
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY+T+S DPSLSSISCADNQ+H+LKMPSM
Sbjct: 292 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYYTDSTDPSLSSISCADNQIHILKMPSM 351
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
I++SISGIKLPC P+ K +AF+ GLVA+R ENYCI YSL DDRGISEVQV
Sbjct: 352 GILKSISGIKLPCSFPKMSKVSFSGVAFDRTSGLVAVRTENYCIQLYSLFDDRGISEVQV 411
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERN+QP D++T+VV LVALS DGS+MST ++KLAEEG+G LVCLKFW G+ NK F+LS
Sbjct: 412 CERNYQPSDEITLVVALVALSLDGSMMSTAEVKLAEEGLGGLVCLKFWALGSDNKNFSLS 471
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--LQSSGWSCHAVG 604
TIVY+PHRDA IS++ FHP R AVS+SYG DFKVW+CN + +KD L +S W+CHAV
Sbjct: 472 TIVYDPHRDAEISSLTFHPTRCMAVSTSYGADFKVWVCNYGILRKDQVLTNSRWTCHAVA 531
Query: 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664
SYKKK MTAAAFS DGSVLAVAAETVITLWDPD+N+LVAV+GET TPI +SFVG SEYL
Sbjct: 532 SYKKKPMTAAAFSNDGSVLAVAAETVITLWDPDKNILVAVLGETDTPIRTLSFVGKSEYL 591
Query: 665 VATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695
+ S GSKPQLSVW+MSKLS+SWSY LHVE
Sbjct: 592 ASASLGSKPQLSVWSMSKLSMSWSYRLHVEA 622
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449457177|ref|XP_004146325.1| PREDICTED: WD repeat-containing protein 75-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/629 (68%), Positives = 521/629 (82%), Gaps = 7/629 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MI GG+SYVS+PPAFSND KRLLVCT +VSIFSTSTGLQI+SL+GHKA VT+V VVPAS
Sbjct: 1 MITGGKSYVSAPPAFSNDAKRLLVCTGTSVSIFSTSTGLQIASLKGHKAFVTSVTVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
+ A+KIL +CWT SLDGTI+YWDFS+PEL+KTID++ ++SMVIPSLL Q + D K
Sbjct: 61 SAASKILCFCWTTSLDGTIRYWDFSIPELMKTIDIRLPVYSMVIPSLLGQLLERDVKSRD 120
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
LFAY+SV++ K+ +P + G+I KCNLT+SRLA GV LAE ++P+ +T SSS
Sbjct: 121 LFAYVSVQNI------GVKDGKPVPVRGQILKCNLTKSRLATGVILAETQQPEYLTTSSS 174
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
G +FGIR +RK+ +WKVP+ + E++ +KITLHHTK LTVLAFHPTQR VAAGDVTGRIL
Sbjct: 175 GSFFGIRNKRKIHVWKVPNGQFEKLGAKKITLHHTKDLTVLAFHPTQRTVAAGDVTGRIL 234
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWRGFG+RTF + + +++E+RPGVR NDDAD C+T HWHP+EV L FSSDGA
Sbjct: 235 IWRGFGNRTFPVSGEEAGKKSFDSDEDRPGVRGNDDADSCSTRHWHPTEVIALSFSSDGA 294
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YLYSGGKEGVLVVWQLDT K+K+LPRIGSPLLYFT+SPDP L+S+SCADNQ+HLLKMPSM
Sbjct: 295 YLYSGGKEGVLVVWQLDTEKRKYLPRIGSPLLYFTDSPDPLLASVSCADNQIHLLKMPSM 354
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
EI++SISGIKLPC P+ +G AFN + GLVALR+ENY I FYSL DD GI EVQ+
Sbjct: 355 EILKSISGIKLPCSFPDVCQGSNNGFAFNQNDGLVALRSENYSIQFYSLFDDCGICEVQI 414
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERNHQPG+++TVV+T V LS DGSLM+T +I++ E GIG L+CLKFW S +NK+F+LS
Sbjct: 415 CERNHQPGEELTVVITSVVLSLDGSLMTTAEIRIPEGGIGGLICLKFWDSELENKKFSLS 474
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ-KDLQSSGWSCHAVGS 605
T+VYEPHRDAGISA+AFHPNRR VS+SYGGDFK+W+CN L + + ++S W CH+VGS
Sbjct: 475 TVVYEPHRDAGISALAFHPNRRMVVSTSYGGDFKIWVCNGGLPKVQGEKNSSWMCHSVGS 534
Query: 606 YKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665
YKKK+MTAA FSADGSVLAVAAETVITLWDP++N+LVAVIGETLTPI+N+SF G S++LV
Sbjct: 535 YKKKSMTAATFSADGSVLAVAAETVITLWDPEQNILVAVIGETLTPIVNLSFAGDSQFLV 594
Query: 666 ATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
+ S GSKPQLSVW +SKLSISWSY LH+E
Sbjct: 595 SVSQGSKPQLSVWTVSKLSISWSYKLHIE 623
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502945|ref|XP_004161786.1| PREDICTED: LOW QUALITY PROTEIN: WD repeat-containing protein 75-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 900 bits (2326), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/629 (67%), Positives = 520/629 (82%), Gaps = 7/629 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MI GG+SYVS+PPAFSND KRLLVCT +VSIFSTSTGLQI+SL+GHKA VT+V VVPAS
Sbjct: 1 MITGGKSYVSAPPAFSNDAKRLLVCTGTSVSIFSTSTGLQIASLKGHKAFVTSVTVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
+ A+KIL +CWT SLDGTI+YWDFS+PEL+KTID++ ++SMVIPSLL Q + D K
Sbjct: 61 SAASKILCFCWTTSLDGTIRYWDFSIPELMKTIDIRLPVYSMVIPSLLGQLLERDVKSRD 120
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
LFAY+SV++ K+ +P + G+I KCNLT+SRLA GV LAE ++P+ +T SSS
Sbjct: 121 LFAYVSVQNI------GVKDGKPVPVRGQILKCNLTKSRLATGVILAETQQPEYLTTSSS 174
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
G +FGIR +RK+ +WKVP+ + E++ +K TLHHTK LTVLAFHPTQR VAAGDVTGRIL
Sbjct: 175 GSFFGIRNKRKIHVWKVPNGQFEKLGAKKXTLHHTKDLTVLAFHPTQRTVAAGDVTGRIL 234
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWRGFG+RTF + + +++E+RPGVR NDDAD C+T HWHP+EV L FSSDGA
Sbjct: 235 IWRGFGNRTFPVSGEEAGKKSFDSDEDRPGVRGNDDADSCSTRHWHPTEVIALSFSSDGA 294
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YLYSGGKEGVLVVWQLDT K+K+LPRIGSPLLYFT+SPDP L+S+SCADNQ+HLLKMPSM
Sbjct: 295 YLYSGGKEGVLVVWQLDTEKRKYLPRIGSPLLYFTDSPDPLLASVSCADNQIHLLKMPSM 354
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
EI++SISGIKLPC P+ +G AFN + GLVALR+ENY I FYSL DD GI EVQ+
Sbjct: 355 EILKSISGIKLPCSFPDVCQGSNNGFAFNQNDGLVALRSENYSIQFYSLFDDCGICEVQI 414
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERNHQPG+++TVV+T V LS DGSLM+T +I++ E GIG L+CLKFW S +NK+F+LS
Sbjct: 415 CERNHQPGEELTVVITSVVLSLDGSLMTTAEIRIPEGGIGGLICLKFWDSELENKKFSLS 474
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ-KDLQSSGWSCHAVGS 605
T+VYEPHRDAGISA+AFHPNRR VS+SYGGDFK+W+CN L + + ++S W CH+VGS
Sbjct: 475 TVVYEPHRDAGISALAFHPNRRMVVSTSYGGDFKIWVCNGGLPKVQGEKNSSWMCHSVGS 534
Query: 606 YKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665
YKKK+MTAA FSADGSVLAVAAETVITLWDP++N+LVAVIGETLTPI+N+SF G S++LV
Sbjct: 535 YKKKSMTAATFSADGSVLAVAAETVITLWDPEQNILVAVIGETLTPIVNLSFAGDSQFLV 594
Query: 666 ATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
+ S GSKPQLSVW +SKLSISWSY LH+E
Sbjct: 595 SVSQGSKPQLSVWTVSKLSISWSYKLHIE 623
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451403|ref|XP_002266770.1| PREDICTED: WD repeat-containing protein 75 [Vitis vinifera] gi|296087114|emb|CBI33488.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/631 (69%), Positives = 516/631 (81%), Gaps = 9/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MI+GG+S VSSPP FSND K+LLVCT TVSIFSTST LQI+ LEGH A VT+V+VVPA
Sbjct: 1 MIKGGKSLVSSPPVFSNDAKKLLVCTGCTVSIFSTSTSLQITELEGHTALVTSVVVVPAF 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
TP++KIL YCWT+SLDGT++YWDFS+PEL+KT+D++ IFSMVIP +L Q A++D K P
Sbjct: 61 TPSSKILCYCWTSSLDGTVRYWDFSLPELMKTVDIRLPIFSMVIPGILSQLAETDGKTPN 120
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
LFAYLSVE+T K +P+ ++ +I KCNLT+SRLA GV LAE ++P++ITISSS
Sbjct: 121 LFAYLSVENT----KIQDDQPK---VHRKILKCNLTKSRLAAGVILAETQQPELITISSS 173
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
GK+FG+R +RKL +W+V + E ++KITLHHTK LTV AFHPT+RIVAAGDVTGRIL
Sbjct: 174 GKFFGVRNKRKLHVWEVIAHDHEGAPIKKITLHHTKNLTVFAFHPTERIVAAGDVTGRIL 233
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
IWR FG RTF+ D MN MNNE+ERPGVR +DDAD C TWHWH +EV VL FSSDGA
Sbjct: 234 IWRSFGRRTFSMGDGLMNGRAMNNEDERPGVRGDDDADSCATWHWHSAEVKVLSFSSDGA 293
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426
YL+SGGKEGVLV WQLDTGKKKFLPRIGSPLLYF S DPSLSS+SC+DN++HLLKMPSM
Sbjct: 294 YLFSGGKEGVLVFWQLDTGKKKFLPRIGSPLLYFATSLDPSLSSVSCSDNRIHLLKMPSM 353
Query: 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486
EI++SISGIKLPC PE Y+GL F+ GLVA R ENYCI FYSL DDR EVQ+
Sbjct: 354 EILKSISGIKLPCSFPEIYEGLHSRFIFDQTAGLVAFRTENYCIQFYSLFDDRENFEVQI 413
Query: 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546
CERNHQP DDVTVVVTL+ LS DGS+MST + K EEG+G LVCLKFW SG+Q+K F LS
Sbjct: 414 CERNHQPSDDVTVVVTLMVLSPDGSMMSTAETKFPEEGLGGLVCLKFWTSGSQSKGFILS 473
Query: 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--LQSSGWSCHAVG 604
TI+YEPHRDAGISA+AFHP R AVSSSYGGDFK+W C+ E+QQ+D LQ+SGW+CHAVG
Sbjct: 474 TIIYEPHRDAGISAIAFHPTRHMAVSSSYGGDFKIWACSHEIQQRDQTLQNSGWTCHAVG 533
Query: 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664
SYK+K MTAA FSADGSVLA+AAETVIT+WDP++NVLVAVIGETL PI +SF+G SEYL
Sbjct: 534 SYKRKPMTAATFSADGSVLAIAAETVITIWDPEKNVLVAVIGETLEPITMLSFIGKSEYL 593
Query: 665 VATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695
V+ S GSK QLS+W++SKLS SWSY L E
Sbjct: 594 VSASRGSKSQLSLWSLSKLSESWSYKLQAEA 624
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3004552|gb|AAC09025.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/631 (64%), Positives = 492/631 (77%), Gaps = 11/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH APVTT+IVVPAS
Sbjct: 1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK--- 183
+PA KIL YCWTASLDGTI++WDFS PELLKTID + I+SMVIPSLL +P Q D++
Sbjct: 61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRREL 120
Query: 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
KL AY+SVED + K+ + G I + NL +SR+ G TL E EP+ I I
Sbjct: 121 SGKLVAYVSVEDISVVNQGSKE------LRGHIRRFNLAKSRIPRGDTLKETAEPESIVI 174
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
S SG++FGIR + K+ IW VP + V RK+TLHHTK + AFHPT+R++AAGDVTG
Sbjct: 175 SPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTG 234
Query: 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363
R+LIWRGFG+R A + K + M + + GVR DDA+ CTTWHWH +EV+VL FSS
Sbjct: 235 RVLIWRGFGNRKLALGNQKKKVRAMV-DLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSS 293
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423
DGAYLYSGG+EGVLVVWQLDTGKKKFLPRIGSPLLYF SPDP+LSS+ CADNQ+HLLKM
Sbjct: 294 DGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKM 353
Query: 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483
PSMEI+R+ISGIK P LP Y+GL +AF+ G+ AL ENYC+ Y+LL+DRGISE
Sbjct: 354 PSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISE 413
Query: 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543
+QVCERNHQPGD++TVVVT VALS DGS+MST ++KL E+GIG LV LKFW S +K F
Sbjct: 414 IQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTF 473
Query: 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603
TLSTIVYEPHRDAG+SA+ FHP R AVS+S+GGDFK+W+CN + Q D SS W CHAV
Sbjct: 474 TLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSS-WICHAV 532
Query: 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEY 663
GSYKKK MTAAAFS DG+V+AVAAE VITLW+PD+N+L++V+G TLTPI + F G SE+
Sbjct: 533 GSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEF 592
Query: 664 LVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
LVA S +P+LSVWN SKLS+SWSY L +E
Sbjct: 593 LVAASHIPRPELSVWNTSKLSLSWSYGLRIE 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21539489|gb|AAM53297.1| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/631 (64%), Positives = 492/631 (77%), Gaps = 11/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH APVTT+IVVPAS
Sbjct: 1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK--- 183
+PA KIL YCWTASLDGTI++WDFS PELLKTID + I+SMVIPSLL +P Q D++
Sbjct: 61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRREL 120
Query: 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
KL AY+SVED + K+ + G I + NL +SR+ G TL E EP+ I I
Sbjct: 121 SGKLVAYVSVEDISVVNQGSKE------LRGHIRRFNLAKSRIPRGDTLKETAEPESIVI 174
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
S SG++FGIR + K+ IW VP + V RK+TLHHTK + AFHPT+R++AAGDVTG
Sbjct: 175 SPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTG 234
Query: 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363
R+LIWRGFG+R A + K + M + + GVR DDA+ CTTWHWH +EV+VL FSS
Sbjct: 235 RVLIWRGFGNRKLALGNQKKKVRAMV-DLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSS 293
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423
DGAYLYSGG+EGVLVVWQLDTGKKKFLPRIGSPLLYF SPDP+LSS+ CADNQ+HLLKM
Sbjct: 294 DGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKM 353
Query: 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483
PSMEI+R+ISGIK P LP Y+GL +AF+ G+ AL ENYC+ Y+LL+DRGISE
Sbjct: 354 PSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISE 413
Query: 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543
+QVCERNHQPGD++TVVVT VALS DGS+MST ++KL E+GIG LV LKFW S +K F
Sbjct: 414 IQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTF 473
Query: 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603
TLSTIVYEPHRDAG+SA+ FHP R AVS+S+GGDFK+W+CN + Q D SS W CHAV
Sbjct: 474 TLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSS-WICHAV 532
Query: 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEY 663
GSYKKK MTAAAFS DG+V+AVAAE VITLW+PD+N+L++V+G TLTPI + F G SE+
Sbjct: 533 GSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEF 592
Query: 664 LVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
LVA S +P+LSVWN SKLS+SWSY L +E
Sbjct: 593 LVAASHIPRPELSVWNTSKLSLSWSYGLRIE 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30680505|ref|NP_179480.2| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gi|330251729|gb|AEC06823.1| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/631 (64%), Positives = 492/631 (77%), Gaps = 11/631 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH APVTT+IVVPAS
Sbjct: 1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK--- 183
+PA KIL YCWTASLDGTI++WDFS PELLKTID + I+SMVIPSLL +P Q D++
Sbjct: 61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRREL 120
Query: 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
KL AY+SVED + K+ + G I + NL +SR+ G TL E EP+ I I
Sbjct: 121 SGKLVAYVSVEDISVVNQGSKE------LRGHIRRFNLAKSRIPRGDTLKETAEPESIVI 174
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
S SG++FGIR + K+ IW VP + V RK+TLHHTK + AFHPT+R++AAGDVTG
Sbjct: 175 SPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTG 234
Query: 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363
R+LIWRGFG+R A + K + M + + GVR DDA+ CTTWHWH +EV+VL FSS
Sbjct: 235 RVLIWRGFGNRKLALGNQKKKVRAMV-DLDNAGVRGEDDAESCTTWHWHSAEVNVLNFSS 293
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423
DGAYLYSGG+EGVLVVWQLDTGKKKFLPRIGSPLLYF SPDP+LSS+ CADNQ+HLLKM
Sbjct: 294 DGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKM 353
Query: 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483
PSMEI+R+ISGIK P LP Y+GL +AF+ G+ AL ENYC+ Y+LL+DRGISE
Sbjct: 354 PSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISE 413
Query: 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543
+QVCERNHQPGD++TVVVT VALS DGS+MST ++KL E+GIG LV LKFW S +K F
Sbjct: 414 IQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTF 473
Query: 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603
TLSTIVYEPHRDAG+SA+ FHP R AVS+S+GGDFK+W+CN + Q D SS W CHAV
Sbjct: 474 TLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSS-WICHAV 532
Query: 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEY 663
GSYKKK MTAAAFS DG+V+AVAAE VITLW+PD+N+L++V+G TLTPI + F G SE+
Sbjct: 533 GSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEF 592
Query: 664 LVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
LVA S +P+LSVWN SKLS+SWSY L +E
Sbjct: 593 LVAASHIPRPELSVWNTSKLSLSWSYGLRIE 623
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297832610|ref|XP_002884187.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297330027|gb|EFH60446.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/632 (64%), Positives = 491/632 (77%), Gaps = 11/632 (1%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
MIRGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH A VTT+IVVPAS
Sbjct: 1 MIRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTALVTTLIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK--- 183
TPA KIL YCWTASLDGTI++WDFS PELLKTID + I+SMVIPSLL +P Q D++
Sbjct: 61 TPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRREL 120
Query: 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
KL A++SVED + K+ + G I + NL + R+ G TL E EP+ I I
Sbjct: 121 SGKLVAFVSVEDISVVNEGSKE------LRGHIRRFNLAKPRVPRGDTLKETAEPESIVI 174
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
S SG++FGIR + K+ IW +P + V RK+TLHHTK + AFHPT+R++AAGDVTG
Sbjct: 175 SPSGEFFGIRHKCKIHIWDIPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTG 234
Query: 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363
R+LIWRGFG+R A + K + + + GVR DD + CTTWHWH +EV+VL FSS
Sbjct: 235 RVLIWRGFGNRKLALGNQKKKVR-ATVDLDNAGVRGEDDTESCTTWHWHSAEVNVLNFSS 293
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423
DGAYLYSGG+EGVLVVWQLDTGKKKFLPRIGSPLLYF SPDP+LSS+ CADNQ+HLLKM
Sbjct: 294 DGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKM 353
Query: 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483
PSMEI+R+ISGIK P LP Y+GL +AF+ G+ AL ENYC+ Y+LL+DRGISE
Sbjct: 354 PSMEILRTISGIKAPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISE 413
Query: 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543
+QVCERNHQPGD++TVVVT VALS DGS+MST ++KL E+GIG LV LKFWVS +K F
Sbjct: 414 IQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWVSEPDSKTF 473
Query: 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603
TLSTIVYEPHRDAG+SA+AFHP R AVS+S+GGDFK+W+CN + Q D SS W CHAV
Sbjct: 474 TLSTIVYEPHRDAGVSAIAFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSS-WICHAV 532
Query: 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEY 663
GSYKKK MTAAAFS DG+VLAVAAE VITLW+PD+N+L++V+G TLTPI + F G SE+
Sbjct: 533 GSYKKKPMTAAAFSGDGTVLAVAAENVITLWNPDKNILLSVLGATLTPITKLCFAGKSEF 592
Query: 664 LVATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695
LVA S +P+LSVWN SKLSISWSY L VE
Sbjct: 593 LVAASHFPRPELSVWNTSKLSISWSYGLRVEA 624
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 762 | ||||||
| TAIR|locus:2044480 | 804 | AT2G18900 "AT2G18900" [Arabido | 0.813 | 0.771 | 0.629 | 1.3e-235 | |
| TAIR|locus:2079266 | 764 | AT3G26480 "AT3G26480" [Arabido | 0.461 | 0.460 | 0.485 | 4e-132 | |
| ZFIN|ZDB-GENE-030616-5 | 832 | wdr75 "WD repeat domain 75" [D | 0.429 | 0.393 | 0.281 | 1.5e-40 | |
| UNIPROTKB|E1C7K4 | 830 | WDR75 "Uncharacterized protein | 0.434 | 0.398 | 0.309 | 2.2e-39 | |
| UNIPROTKB|F1MCR2 | 831 | WDR75 "Uncharacterized protein | 0.446 | 0.409 | 0.293 | 2.9e-35 | |
| UNIPROTKB|F1RXV9 | 834 | WDR75 "Uncharacterized protein | 0.444 | 0.406 | 0.303 | 1.4e-34 | |
| UNIPROTKB|E2RFM0 | 829 | WDR75 "Uncharacterized protein | 0.446 | 0.410 | 0.295 | 3.5e-34 | |
| UNIPROTKB|Q8IWA0 | 830 | WDR75 "WD repeat-containing pr | 0.434 | 0.398 | 0.301 | 3.9e-34 | |
| DICTYBASE|DDB_G0268898 | 1015 | wdr75 "U3 snoRNP protein" [Dic | 0.194 | 0.145 | 0.305 | 1.3e-19 | |
| RGD|1564869 | 649 | Wdr75 "WD repeat domain 75" [R | 0.284 | 0.334 | 0.287 | 5.9e-17 |
| TAIR|locus:2044480 AT2G18900 "AT2G18900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2075 (735.5 bits), Expect = 1.3e-235, Sum P(2) = 1.3e-235
Identities = 397/631 (62%), Positives = 475/631 (75%)
Query: 67 MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
M RGGRSYV+SPP+FSND K+LLVCT NTVS+FS +TGLQI+SLEGH APVTT+IVVPAS
Sbjct: 1 MKRGGRSYVTSPPSFSNDAKKLLVCTGNTVSVFSAATGLQITSLEGHTAPVTTLIVVPAS 60
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP- 185
+PA KIL YCWTASLDGTI++WDFS PELLKTID + I+SMVIPSLL +P Q D++
Sbjct: 61 SPAQKILCYCWTASLDGTIRHWDFSGPELLKTIDAQLPIYSMVIPSLLSEPQQIDKRREL 120
Query: 186 --KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
KL AY+SVED + K+ + G I + NL +SR+ G TL E EP+ I I
Sbjct: 121 SGKLVAYVSVEDISVVNQGSKE------LRGHIRRFNLAKSRIPRGDTLKETAEPESIVI 174
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
S SG++FGIR + K+ IW VP + V RK+TLHHTK + AFHPT+R++AAGDVTG
Sbjct: 175 SPSGEFFGIRHKCKIHIWDVPSGGSRHAVSRKMTLHHTKVINAFAFHPTERVIAAGDVTG 234
Query: 304 RILIWRGFGDRTFATXXXXXXXXXXXXXXXRPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363
R+LIWRGFG+R A GVR DDA+ CTTWHWH +EV+VL FSS
Sbjct: 235 RVLIWRGFGNRKLALGNQKKKVRAMVDLD-NAGVRGEDDAESCTTWHWHSAEVNVLNFSS 293
Query: 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423
DGAYLYSGG+EGVLVVWQLDTGKKKFLPRIGSPLLYF SPDP+LSS+ CADNQ+HLLKM
Sbjct: 294 DGAYLYSGGREGVLVVWQLDTGKKKFLPRIGSPLLYFMWSPDPTLSSVVCADNQIHLLKM 353
Query: 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483
PSMEI+R+ISGIK P LP Y+GL +AF+ G+ AL ENYC+ Y+LL+DRGISE
Sbjct: 354 PSMEILRTISGIKPPPSLPRMYEGLASTVAFDRSSGIAALCTENYCVQLYNLLNDRGISE 413
Query: 484 VQVCERNHQPGXXXXXXXXXXXXSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543
+QVCERNHQPG S DGS+MST ++KL E+GIG LV LKFW S +K F
Sbjct: 414 IQVCERNHQPGDEITVVVTAVALSLDGSVMSTTEVKLPEDGIGGLVSLKFWASEPDSKTF 473
Query: 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603
TLSTIVYEPHRDAG+SA+ FHP R AVS+S+GGDFK+W+CN + Q D SS W CHAV
Sbjct: 474 TLSTIVYEPHRDAGVSAIVFHPTRSMAVSTSFGGDFKIWVCNSDKNQTDKDSS-WICHAV 532
Query: 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEY 663
GSYKKK MTAAAFS DG+V+AVAAE VITLW+PD+N+L++V+G TLTPI + F G SE+
Sbjct: 533 GSYKKKPMTAAAFSGDGTVMAVAAENVITLWNPDKNILLSVLGSTLTPITKLCFAGKSEF 592
Query: 664 LVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694
LVA S +P+LSVWN SKLS+SWSY L +E
Sbjct: 593 LVAASHIPRPELSVWNTSKLSLSWSYGLRIE 623
|
|
| TAIR|locus:2079266 AT3G26480 "AT3G26480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 893 (319.4 bits), Expect = 4.0e-132, Sum P(3) = 4.0e-132
Identities = 180/371 (48%), Positives = 244/371 (65%)
Query: 337 VRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396
V+ DD + CTT++WH +EV+VL FSSDGA LYSG K G VVW+L TGKK+ LP+IGSP
Sbjct: 230 VKTEDDTESCTTFNWHSAEVTVLNFSSDGALLYSGVKAGDFVVWELGTGKKQLLPKIGSP 289
Query: 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC----RDI 452
LLYF S D +LSS+ CADNQ+HLLKMPSMEI+R+ISGIK P P PE + +C RDI
Sbjct: 290 LLYFIFSSDSTLSSVICADNQIHLLKMPSMEILRTISGIK-P-PTPERHGFICYVKTRDI 347
Query: 453 ------AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGXXXXXXXXXXXX 506
+ + G+ A N+ + Y+LL D ISEVQ+C+ +
Sbjct: 348 CLTRTVSIDRSSGIAAFCTANHRVQLYNLLSDHDISEVQICDHHPDDDDQVRVLVTAVAL 407
Query: 507 SQDGSLMSTVDIKLAEEGIGS-LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565
S++GS+M+T + + A +V LKFWV +K F+LST++ +PHR+A I+A+A +P
Sbjct: 408 SRNGSVMTTAEARFAASNFSEGIVSLKFWVFVPDSKTFSLSTVINQPHREAAITAIALNP 467
Query: 566 NRRAAVSSSYGGDFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623
R AVS S GDFK+W+C+ + K+L + S W CH VGSYK+ +TAA FS DGS L
Sbjct: 468 ARSMAVSISSAGDFKIWVCSSD---KNLTPEDSNWICHGVGSYKRTPITAAVFSGDGSCL 524
Query: 624 AVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683
A+AA+TVIT+W P +N L+ V+G+ PIM +SF G +L+A S GS P LSVW++
Sbjct: 525 ALAAKTVITIWHPLKNELLYVVGKANAPIMELSFTGGG-FLIAASHGSTPHLSVWDLMTF 583
Query: 684 SISWSYLLHVE 694
+SWSY L++E
Sbjct: 584 CLSWSYRLYIE 594
|
|
| ZFIN|ZDB-GENE-030616-5 wdr75 "WD repeat domain 75" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.5e-40, Sum P(3) = 1.5e-40
Identities = 98/348 (28%), Positives = 167/348 (47%)
Query: 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL-DTGKKKFLPRIGSPLLYFTESPD 405
+T HWH V+ L F+ +G+ L SGG E VLV WQ D KK+FLPR+G + + + S D
Sbjct: 244 STKHWHHDAVNHLCFTPEGSNLLSGGIESVLVQWQYGDMSKKEFLPRLGGSISHVSASAD 303
Query: 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465
L + +DN++ +++ S ++ I G+ + D+ + + L
Sbjct: 304 GQLFCTAHSDNKISIIES-SFKVSGLIQGLV-------RGDAVSTDLMIDPRSKALVLNG 355
Query: 466 ENYCIHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTVDIKLAEEG 524
+ + FYSLL D+ + + + ++ + GS ++TV+ + +
Sbjct: 356 KPGHLQFYSLLRDKHLYNLDIVQQEYIYEAGLDQFEVVKAVFDVKGSWLATVEER-GHKT 414
Query: 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA--VSSSYGGDFKVW 582
LK W + F L+T V E H + I+++ F + V+++ G FK W
Sbjct: 415 SDLEFFLKLWAFDETTQSFVLNTTVTEAHSER-ITSMCFSSSEETTMLVTTALDGQFKAW 473
Query: 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLV 642
+ QQ + WSC VGSY FSADGS+LAV+ + V+TLW P+ L+
Sbjct: 474 CQTADAQQAQ---NYWSCDFVGSYHNLKPKNCCFSADGSILAVSFQEVLTLWSPETWELL 530
Query: 643 AVIGETLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688
+ + I ++ F + S+YL++T+ +K L WN+ ++ WS
Sbjct: 531 TTLCQPPGEIRDLCFGRLSCSKYLLSTT--TKNLLCCWNLLTCALEWS 576
|
|
| UNIPROTKB|E1C7K4 WDR75 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 345 (126.5 bits), Expect = 2.2e-39, Sum P(3) = 2.2e-39
Identities = 111/359 (30%), Positives = 166/359 (46%)
Query: 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG-KKKFLPRIGSPLLYFTESPD 405
+T HWH +V L FS +G L SGG E VLV W + K+ FLPR+GS + Y + S D
Sbjct: 242 STLHWHHDKVLDLAFSLEGTSLLSGGVESVLVQWHCGSDCKRDFLPRLGSAIEYVSISSD 301
Query: 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465
+ S DN++ ++ ++ ++I G+ + GL D LV L
Sbjct: 302 GTFYCTSHTDNRITIINS-NLRFSKTIQGL---IKARDVKTGLVVD---PRTKALV-LNG 353
Query: 466 ENYCIHFYSLLDDRGISEVQVCERN--HQPGXXXXXXXXXXXXSQDGSLMSTVDIKLAEE 523
E + FY L D+ + + + ++ HQ G +Q G ++TV+ + EE
Sbjct: 354 EPGHLQFYCLQSDKQLYSLDIVQQEYIHQAGLNQSDLVRVAFSAQ-GKWLATVEER--EE 410
Query: 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS----SYGGD- 578
L LK W + + F L+T + PH D I+A+ F S + G D
Sbjct: 411 TDLELQ-LKLWFFDEETQSFKLNTRISMPHEDH-ITAMCFRDTDEMEDDSLMLVTTGRDC 468
Query: 579 -FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637
FKVW+ ++ + QS WSC VGSY T FS DGS+LAV+ E +T+WD
Sbjct: 469 VFKVWVILEDTDPEAQQSLSWSCDFVGSYHSYQATNCCFSEDGSLLAVSFEETVTVWDSS 528
Query: 638 RNVLVAVIGETLTPIMNMSF--VGSSEYLV-ATSWGSKPQLSVWNMSKLSISWSYLLHV 693
L I ++ F + S+YL+ AT G L WN+ ++ WS L+V
Sbjct: 529 TWDLKCTFCHPPGKIRSICFGRLTCSKYLIGATDHGF---LCCWNLLSCALEWSAHLNV 584
|
|
| UNIPROTKB|F1MCR2 WDR75 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 348 (127.6 bits), Expect = 2.9e-35, Sum P(3) = 2.9e-35
Identities = 107/365 (29%), Positives = 176/365 (48%)
Query: 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPL 397
D++ T HWH V L FS G+ L SGG+E VLV W+ K K+FLPR+G+ +
Sbjct: 234 DDEKKYTYTCLHWHHDLVMDLAFSVTGSSLLSGGRESVLVEWREAAEKNKEFLPRLGATI 293
Query: 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457
+ + SP L S +DN++ ++ ++E I G+ + + GL D
Sbjct: 294 EHISVSPAGDLFCTSHSDNKITIIHR-NLEASAVIQGLVKDRSI---FTGLMID---PRT 346
Query: 458 GGLVALRAENYCIHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTV 516
LV L + + FYSL D+ + + + ++ + G+ ++TV
Sbjct: 347 KALV-LNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDSGLIQIELTKAAFGCYGNWLATV 405
Query: 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA----VS 572
+ + +E L +K W+ + + F L+T V PH D I+A+ F ++ V+
Sbjct: 406 EQRQEKETELELQ-MKLWMYNKKTQGFVLNTKVNMPHEDH-ITALCFCNAEKSESSTLVT 463
Query: 573 SSYGGDFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630
+S G FKVWI D+ D+ ++ GW+C VGSY K T FS DGS+LAV+ E +
Sbjct: 464 ASKDGHFKVWILTDD---SDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEI 520
Query: 631 ITLWDPDRNVLVAVIGETLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688
+T+WD + L + I ++ F + S+YL+ + L WN+ ++ WS
Sbjct: 521 VTIWDSETWELKCTFCQRAGKIRHLCFGRLTCSKYLLGVT--ENGILCCWNLLSCALEWS 578
Query: 689 YLLHV 693
L+V
Sbjct: 579 TKLNV 583
|
|
| UNIPROTKB|F1RXV9 WDR75 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 343 (125.8 bits), Expect = 1.4e-34, Sum P(3) = 1.4e-34
Identities = 111/366 (30%), Positives = 176/366 (48%)
Query: 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPL 397
D++ T HWH V L FS G L SGG+E VLV W+ T K K+FLPR+G+ +
Sbjct: 237 DDEKKYTYTCLHWHHDLVMDLAFSVTGNSLLSGGRESVLVEWREVTEKNKEFLPRLGATI 296
Query: 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457
+ + SP L S +DN++ +++ ++E I G+ + GL D
Sbjct: 297 EHISVSPAGDLFCTSHSDNKIIIIQR-NLEASAVIQGLVKDSKI---LTGLMID---PRT 349
Query: 458 GGLVALRAENYCIHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTV 516
LV L + + FYSL D+ + + + ++ + G+ ++TV
Sbjct: 350 KALV-LNGKPGHLQFYSLQSDKQLYNLDIIQQEYINDYGLIQIELTKAAFGCYGNWLATV 408
Query: 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA----VS 572
+ + +E L +K W + + F L+T V PH D I+A+ F ++ V+
Sbjct: 409 EQRQEKETELELQ-MKLWTYNKKTQGFVLNTKVSMPHEDH-ITALCFCNAEKSENPTLVT 466
Query: 573 SSYGGDFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630
+S G FKVWI D+ D+ ++ GW+C VGSY K T FS DGS+LAV+ E +
Sbjct: 467 ASKDGHFKVWILTDD---SDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEI 523
Query: 631 ITLWDPDRNVLVAVIGETLTPIMNMSF--VGSSEYLV-ATSWGSKPQLSVWNMSKLSISW 687
+T+WD + L + I ++ F + S+YL+ AT G L WN+ ++ W
Sbjct: 524 VTIWDSETWELKCTFCQRAGKIRHLCFGRLTCSKYLLGATENGI---LCCWNLLSCALEW 580
Query: 688 SYLLHV 693
S L V
Sbjct: 581 SAKLTV 586
|
|
| UNIPROTKB|E2RFM0 WDR75 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 344 (126.2 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 108/365 (29%), Positives = 173/365 (47%)
Query: 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPL 397
D+D T HWH V L FS G L SGG+E VLV W+ K K+FLPR+G+ +
Sbjct: 234 DDDKKYTYTCLHWHHDMVMDLAFSVTGTSLLSGGRESVLVEWRDAAEKNKEFLPRLGATI 293
Query: 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457
+ + SP L S +DN++ ++ ++E I G+ + Y GL D
Sbjct: 294 EHISVSPAGDLFCTSHSDNKIIVIHR-NLEASAVIQGLVKDSNI---YTGLMID---PRT 346
Query: 458 GGLVALRAENYCIHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTV 516
LV L + + FYSL D+ + + + ++ + G+ ++TV
Sbjct: 347 KALV-LNGKPGHLQFYSLQHDKQLYNLDIIQQEYINDYGLIQIELTKAAFDCYGNWLATV 405
Query: 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR----AAVS 572
+ + +E L +K W+ + + F L+T V PH D I+A+ F + V+
Sbjct: 406 EQRQEKETELELQ-MKLWMYNKKTQGFVLNTKVNMPHEDH-ITALCFCNAEKFENPTLVT 463
Query: 573 SSYGGDFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630
+S G FKVW+ D+ D+ ++ GW+C VGSY K T FS DGS+LAV+ E +
Sbjct: 464 ASKDGHFKVWMLTDD---SDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEI 520
Query: 631 ITLWDPDRNVLVAVIGETLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688
+T+WD + L + I + F + S+YL+ + L WN+ ++ WS
Sbjct: 521 VTIWDSETWELKCTFCQRAGSIRYLCFGRLTCSKYLLGAT--KSDILCCWNLLSCALEWS 578
Query: 689 YLLHV 693
L+V
Sbjct: 579 TKLNV 583
|
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| UNIPROTKB|Q8IWA0 WDR75 "WD repeat-containing protein 75" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 3.9e-34, Sum P(3) = 3.9e-34
Identities = 108/358 (30%), Positives = 173/358 (48%)
Query: 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPD 405
T HWH V L FS G L SGG+E VLV W+ T K K+FLPR+G+ + + + SP
Sbjct: 242 TCLHWHHDMVMDLAFSVTGTSLLSGGRESVLVEWRDATEKNKEFLPRLGATIEHISVSPA 301
Query: 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465
L S +DN++ ++ ++E I G+ + + GL D LV L
Sbjct: 302 GDLFCTSHSDNKIIIIHR-NLEASAVIQGLVKDRSI---FTGLMID---PRTKALV-LNG 353
Query: 466 ENYCIHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTVDIKLAEEG 524
+ + FYSL D+ + + + ++ + G+ ++TV+ + +E
Sbjct: 354 KPGHLQFYSLQSDKQLYNLDIIQQEYINDYGLIQIELTKAAFGCFGNWLATVEQRQEKET 413
Query: 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF----HPNRRAAVSSSYGGDFK 580
L +K W+ + + F L+T + PH D I+A+ F + V++S G FK
Sbjct: 414 ELELQ-MKLWMYNKKTQGFILNTKINMPHEDC-ITALCFCNAEKSEQPTLVTASKDGYFK 471
Query: 581 VWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638
VWI D+ D+ ++ GW+C VGSY K T FS DGS+LAV+ E ++T+WD
Sbjct: 472 VWILTDD---SDIYKKAVGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSVT 528
Query: 639 NVLVAVIGETLTPIMNMSF--VGSSEYLV-ATSWGSKPQLSVWNMSKLSISWSYLLHV 693
L + I ++ F + S+YL+ AT G L WN+ ++ W+ L+V
Sbjct: 529 WELKCTFCQRAGKIRHLCFGRLTCSKYLLGATENGI---LCCWNLLSCALEWNAKLNV 583
|
|
| DICTYBASE|DDB_G0268898 wdr75 "U3 snoRNP protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 1.3e-19, Sum P(5) = 1.3e-19
Identities = 51/167 (30%), Positives = 84/167 (50%)
Query: 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC------ 584
LKFW + N + +I PH I +++FHP + +++S DFK+W
Sbjct: 573 LKFWETSNDNNCKCVFSIT-SPH-STNILSMSFHPTKNLLLTTSEK-DFKLWRKQSMEAI 629
Query: 585 ------NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638
N+ K S W+C GSY+ +A+AFS DGS+ AVA + ++TLWD +
Sbjct: 630 DGTANNNNNNNNKTNIKSYWTCIYDGSYRGLVCSASAFSKDGSIFAVACDHLVTLWDSES 689
Query: 639 NVLVAVIGETLTPIMN-MSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684
+ + ++ + I N +SF+ +E LV S+ + VW++ K S
Sbjct: 690 MLPLDILSFSSCHIANELSFLNDNELLV--SYKENGAI-VWDIKKKS 733
|
|
| RGD|1564869 Wdr75 "WD repeat domain 75" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
Identities = 67/233 (28%), Positives = 113/233 (48%)
Query: 470 IHFYSLLDDRGISEVQVCERNH-QPGXXXXXXXXXXXXSQDGSLMSTVDIKLAEEGIGSL 528
+ FYSL D+ + + + ++ + GS ++TV+ + E L
Sbjct: 177 LQFYSLQSDKQLYNLDIIQQEYINDQGLIQIELTKAAFGCSGSWLATVEQRQENENELEL 236
Query: 529 VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP----NRRAAVSSSYGGDFKVWIC 584
+K W + + F L+T + PH D I+A+ F+ + V++S G FKVW+
Sbjct: 237 Q-MKLWNYSKKTQGFVLNTKISMPHDDH-ITALCFNNAENYEKPILVTASRDGHFKVWVL 294
Query: 585 NDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLV 642
D+ D+ ++ GW+C VGSY K T FS DGS+LAV+ E ++T+WD + L
Sbjct: 295 TDD---SDIYKKAIGWTCDFVGSYHKYQATNCCFSEDGSLLAVSFEEIVTIWDSETWELK 351
Query: 643 AVIGETLTPIMNMSF--VGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693
+ I ++ F + S+YL+ T+ + L WN+ S+ WS L+V
Sbjct: 352 CTFCQRAGKIRHLCFGRLTCSKYLLGTTENNL--LCCWNLLSCSMQWSAKLNV 402
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01210042 | hypothetical protein (812 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 762 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-07 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 6e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 69/320 (21%), Positives = 130/320 (40%), Gaps = 48/320 (15%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSS 410
H V+ + FS DG L +G +G + VW L+TG+ + + P+ S D + +
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLA 67
Query: 411 ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470
+D + L + + E +R+++G + +AF+ DG +++ + + I
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTG----------HTSYVSSVAFSPDGRILSSSSRDKTI 117
Query: 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530
+ + + ++ + R H D V VA S DG+ +++
Sbjct: 118 KVWDVETGKCLTTL----RGHT--DWVNS----VAFSPDGTFVASSSQDG---------T 158
Query: 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590
+K W T TL+ H +++VAF P+ +SSS G K+W
Sbjct: 159 IKLWDLRTGKCVATLTG-----HTG-EVNSVAFSPDGEKLLSSSSDGTIKLW-------- 204
Query: 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPDRNVLVAVIGETL 649
DL + C + + + AFS DG +LA +E I +WD V +
Sbjct: 205 -DLST--GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT 261
Query: 650 TPIMNMSFVGSSEYLVATSW 669
+ ++++ + L + S
Sbjct: 262 NSVTSLAWSPDGKRLASGSA 281
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 3e-12
Identities = 81/361 (22%), Positives = 129/361 (35%), Gaps = 84/361 (23%)
Query: 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRD 339
HT +T +AF P +++A G G I +W T
Sbjct: 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG------------------ 49
Query: 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIG---SP 396
H V + S+DG YL SG + + +W L+TG+ + S
Sbjct: 50 ------------HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR--TLTGHTSY 95
Query: 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456
+ SPD + S S D + + + + + + ++ G +AF+
Sbjct: 96 VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH----------TDWVNSVAFSP 145
Query: 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516
DG VA +++ I + D R V H T V VA S DG + +
Sbjct: 146 DGTFVASSSQDGTIKLW---DLRTGKCVATLT-GH------TGEVNSVAFSPDGEKLLS- 194
Query: 517 DIKLAEEGIGSLV-CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575
S +K W + L T H + G+++VAF P+ S S
Sbjct: 195 ---------SSSDGTIKLW---DLSTGKCLGT--LRGHEN-GVNSVAFSPDGYLLASGSE 239
Query: 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE-TVITLW 634
G +VW DL++ C S ++T+ A+S DG LA + I +W
Sbjct: 240 DGTIRVW---------DLRT--GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
Query: 635 D 635
D
Sbjct: 289 D 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.3 bits (147), Expect = 9e-10
Identities = 84/434 (19%), Positives = 154/434 (35%), Gaps = 69/434 (15%)
Query: 276 ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG----------FGDRTFATNDNKMNL 325
+ H +T +AF P ++ +G G I +W G + + ++
Sbjct: 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS 119
Query: 326 NLMNNEEERPGVRDN--------DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GV 376
N+ D L T H V+ L FS DG L SG G
Sbjct: 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT 179
Query: 377 LVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISG 434
+ +W L TGK L P+ SPD L S + D + L + + +++RS
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRST-- 237
Query: 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494
L + +F+ DG L+A + + I + L S ++ +
Sbjct: 238 ------LSGHSDSVVS--SFSPDGSLLASGSSDGTIRLWDLRSSS--SLLRTLSGHSSS- 286
Query: 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554
V VA S DG L+++ + +G ++ W T +L+ +E
Sbjct: 287 ------VLSVAFSPDGKLLAS----GSSDGT-----VRLWDLETGKLLSSLTLKGHE--- 328
Query: 555 DAGISAVAFHPNR-RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA 613
+S+++F P+ S G ++W K L + +
Sbjct: 329 -GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL------------EGHSNVLS 375
Query: 614 AAFSADGSVLAVA-AETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK 672
+FS DG V++ + + LWD L+ + + + ++ F + L + S +
Sbjct: 376 VSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT 435
Query: 673 PQLSVWNMSKLSIS 686
+ +W++ S
Sbjct: 436 --IRLWDLKTSLKS 447
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 64 NSKMIRGGRSYVSSPPAFSNDVKRLLV-CTSNTVSIFSTSTGLQISSLEGHKAPVTTVIV 122
+ ++G V+ AFS D K L T+ ++ TG + +L+GH PV V
Sbjct: 1 LRRTLKGHTGGVTCV-AFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 123 VPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
T + S S D TI+ WD E ++T+
Sbjct: 60 SADG---TYLAS----GSSDKTIRLWDLETGECVRTL 89
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
A S D L +S T+ ++ TG + +L GH + V++V A +P +ILS +
Sbjct: 58 AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV----AFSPDGRILS---S 110
Query: 139 ASLDGTIKYWDFSVPELLKTI--------DVKFSIFSMVI 170
+S D TIK WD + L T+ V FS +
Sbjct: 111 SSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFV 150
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 68 IRGGRSYVSSPPAFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA 125
+ G SYVSS AFS D R+L +S T+ ++ TG +++L GH V +V
Sbjct: 89 LTGHTSYVSSV-AFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF--- 143
Query: 126 STPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
+P ++ ++S DGTIK WD + + T+
Sbjct: 144 -SPDGTFVA---SSSQDGTIKLWDLRTGKCVATL 173
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (124), Expect = 6e-07
Identities = 93/537 (17%), Positives = 168/537 (31%), Gaps = 104/537 (19%)
Query: 66 KMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA 125
K G S S + ++ + + L L GH+ +T++ P
Sbjct: 17 KKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPD 76
Query: 126 STPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP 185
+ S DGTIK WD L + + S + + A S
Sbjct: 77 G-------ELLLSGSSDGTIKLWD------LDNGEKLIKSLEGLHDSSVSKLALSSPDGN 123
Query: 186 KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS 245
+ S D G + +L+ + + S
Sbjct: 124 SILLASSSLD------------------GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSP 165
Query: 246 SGKYF--GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVT 302
GK G + +W + + + HT ++ LAF P ++A+G
Sbjct: 166 DGKLLASGSSLDGTIKLWDLRTGKPLSTLA-----GHTDPVSSLAFSPDGGLLIASGSSD 220
Query: 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362
G I +W +L + R +T H V V FS
Sbjct: 221 GTIRLW-----------------DLSTGKLLR------------STLSGHSDSV-VSSFS 250
Query: 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIG--SPLLYFTESPDPSLSSISCADNQVHL 420
DG+ L SG +G + +W L + G S +L SPD L + +D V L
Sbjct: 251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRL 310
Query: 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG 480
+ + +++ S++ ++G ++F+ DG L+ DD
Sbjct: 311 WDLETGKLLSSLTLK--------GHEGPVSSLSFSPDGSLLVS----------GGSDDGT 352
Query: 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540
I + + V V+ S DG ++S+ ++ W
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT---------VRLW------ 397
Query: 541 KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597
T S + + ++++ F P+ ++ S S ++W L+ G
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
AFS D ++LL +S T+ ++ STG + +L GH+ V +V A +P +L+ +
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSV----AFSPDGYLLA---S 236
Query: 139 ASLDGTIKYWDFSVPELLKTI 159
S DGTI+ WD E ++T+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTL 257
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 5e-04
Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 64/263 (24%)
Query: 256 RKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314
+ + +W D+E V TL HT ++ +AF P RI+++ I +W
Sbjct: 73 KTIRLW---DLETGECV---RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVW------ 120
Query: 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE 374
D + TT H V+ + FS DG ++ S ++
Sbjct: 121 ------------------------DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156
Query: 375 GVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLSSI--SCADNQVHLLKMPSMEIIR 430
G + +W L TGK G + + P + S +D + L + + + +
Sbjct: 157 GTIKLWDLRTGKCVATLTGHTGE---VNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
Query: 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERN 490
++ G ++ +AF+ DG L+A +E+ I + L VQ
Sbjct: 214 TLRG----------HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLS-G 259
Query: 491 HQPGDDVTVVVTLVALSQDGSLM 513
H VT +A S DG +
Sbjct: 260 HTNS------VTSLAWSPDGKRL 276
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 37.7 bits (88), Expect = 6e-04
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 103 TGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149
+G + +L+GH PVT+V P Y + S DGTIK WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDG-------KYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 91 CTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF 150
T+ ++ TG +++L GH V +V P K+L ++S DGTIK WD
Sbjct: 154 SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE---KLL----SSSSDGTIKLWDL 206
Query: 151 SVPELLKTI 159
S + L T+
Sbjct: 207 STGKCLGTL 215
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 10/72 (13%)
Query: 80 AFSNDVKRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137
AFS D LL S T+ ++ TG + +L GH VT++ A +P K L+
Sbjct: 226 AFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL----AWSPDGKRLA--- 277
Query: 138 TASLDGTIKYWD 149
+ S DGTI+ WD
Sbjct: 278 SGSADGTIRIWD 289
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 100.0 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.98 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.98 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.98 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.97 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.96 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.94 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.94 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.93 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.92 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.92 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.91 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.91 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.9 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.9 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.88 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.88 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.87 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.87 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.86 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.85 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.81 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.81 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.81 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.81 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.8 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.8 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.8 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.8 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.79 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.79 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.79 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.79 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.78 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.77 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.76 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.76 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.76 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.75 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.75 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.74 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.73 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.73 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.73 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.72 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.72 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.71 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.71 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.71 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.71 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.69 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.69 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.68 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.68 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.68 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.68 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.67 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.67 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.67 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.66 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.66 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.65 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.64 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.64 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.64 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.64 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.64 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.63 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.63 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.61 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.6 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.59 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.58 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.58 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.58 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.56 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.55 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.55 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.55 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.54 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.53 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.53 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.53 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.52 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.51 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.51 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.51 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.5 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.49 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.49 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.36 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.34 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.3 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.3 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 99.3 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.25 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.24 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.19 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.14 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 99.12 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 99.12 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.11 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.1 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.09 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.06 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 99.05 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.05 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.03 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 99.03 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 99.03 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.01 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.95 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.95 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.95 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.94 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.94 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.93 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.88 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.85 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.84 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.84 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.82 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.8 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.78 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.77 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.76 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.76 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.75 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.75 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.74 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.72 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.68 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.65 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.64 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.63 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.63 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.59 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.56 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.55 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.55 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.5 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.49 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.48 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.48 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.46 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.43 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.42 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.39 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 98.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.37 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.34 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.34 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.32 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.27 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.25 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.21 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.2 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.19 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.17 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.13 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 98.11 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.1 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 98.1 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.07 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 98.06 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 98.03 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.02 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 98.0 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.97 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.93 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.91 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.86 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.83 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.75 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.75 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.74 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.74 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.73 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.72 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.62 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.53 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.52 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.52 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.52 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 97.5 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 97.49 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.46 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.4 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.38 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 97.29 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 97.26 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.26 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 97.21 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.15 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.13 | |
| PRK10115 | 686 | protease 2; Provisional | 97.12 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.1 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.07 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.06 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 97.02 | |
| PRK10115 | 686 | protease 2; Provisional | 96.8 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.78 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.73 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.7 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.7 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.67 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.54 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.45 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.32 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.17 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.13 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.13 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.12 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.11 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 96.1 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.06 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.04 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.02 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.95 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.91 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.9 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.87 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.73 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.63 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 95.61 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.54 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.47 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.46 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.28 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.99 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.99 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.85 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.82 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.75 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 94.64 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 94.61 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 94.3 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.27 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.2 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.19 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.19 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 94.01 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 94.0 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 93.53 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.53 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 93.44 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 93.26 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.1 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.06 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.97 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 92.71 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 92.64 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 92.62 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 92.58 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 92.03 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.94 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 91.93 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.65 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 91.62 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 91.6 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.59 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.58 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 91.35 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 91.29 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 91.24 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 91.22 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 91.04 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.04 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 90.79 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.6 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.47 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.38 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 90.05 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.58 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 89.33 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 88.58 | |
| PRK13615 | 557 | lipoprotein LpqB; Provisional | 88.47 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 88.2 | |
| PF09826 | 521 | Beta_propel: Beta propeller domain; InterPro: IPR0 | 88.05 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.74 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.54 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 87.34 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 87.26 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.01 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 86.76 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 86.34 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 86.32 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 85.56 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 85.54 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 85.54 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 85.17 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 84.87 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 84.45 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 84.12 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 83.95 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 83.25 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 83.11 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.69 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 82.12 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 81.97 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 81.97 | |
| PLN02153 | 341 | epithiospecifier protein | 81.82 | |
| PF03088 | 89 | Str_synth: Strictosidine synthase; InterPro: IPR01 | 81.47 | |
| COG5276 | 370 | Uncharacterized conserved protein [Function unknow | 81.03 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 80.65 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 80.63 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 80.62 |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=440.04 Aligned_cols=565 Identities=15% Similarity=0.185 Sum_probs=448.5
Q ss_pred EeecCCcceeEEEEecCCCeEEEEecCCccee-ee--ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 35 IERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MI--RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 35 ~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~--~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
..-++.++ .+++... ..|...|+.++... .. ..-...+++ ++++||+++|+++. ...+++|++.+|++++.+
T Consensus 25 ~~~s~nG~--~L~t~~~-d~Vi~idv~t~~~~l~s~~~ed~d~ita-~~l~~d~~~L~~a~rs~llrv~~L~tgk~irsw 100 (775)
T KOG0319|consen 25 VAWSSNGQ--HLYTACG-DRVIIIDVATGSIALPSGSNEDEDEITA-LALTPDEEVLVTASRSQLLRVWSLPTGKLIRSW 100 (775)
T ss_pred eeECCCCC--EEEEecC-ceEEEEEccCCceecccCCccchhhhhe-eeecCCccEEEEeeccceEEEEEcccchHhHhH
Confidence 44455544 5555442 34667888887773 22 334566775 99999999999999 699999999999999999
Q ss_pred cC-CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 111 EG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 111 ~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+. |+++|.-++|+|.+ .+|++|+.|+.++|||+..+.+.+.|++|. .+.++.|
T Consensus 101 Ka~He~Pvi~ma~~~~g-------~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F------------------ 155 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTG-------TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLF------------------ 155 (775)
T ss_pred hhccCCCeEEEEEcCCC-------ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEe------------------
Confidence 98 99999999999999 688999999999999999999999999988 5555555
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCch
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVE 267 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~ 267 (762)
-+... ...+++|..|+.+++||+.+....-.....|.+.|++++|++|+..+. +|.|..+.|||+...+
T Consensus 156 --~~~~~--------~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~ 225 (775)
T KOG0319|consen 156 --HPHWN--------RWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYK 225 (775)
T ss_pred --CCccc--------hhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhh
Confidence 11111 111278999999999999976663367788999999999999998776 6789999999996665
Q ss_pred hhhheeeeeeeccCcCeEEEEEcCC-----CcEEEEeecCCeEEEEeccCCceeeccccc----ccccc---------cc
Q 040987 268 AERVVMRKITLHHTKKLTVLAFHPT-----QRIVAAGDVTGRILIWRGFGDRTFATNDNK----MNLNL---------MN 329 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~sp~-----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~----~~~~~---------~~ 329 (762)
.. +. ..-...+.++.+-++ +.++.+++.+|.+++||.++++....-... ..... ..
T Consensus 226 ~l-----~~-lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~v 299 (775)
T KOG0319|consen 226 KL-----KT-LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLV 299 (775)
T ss_pred hh-----he-echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEE
Confidence 53 22 233456778888777 679999999999999999887543322111 10000 01
Q ss_pred cccCCCCcccCCccccceeeeccccceeEEEE-ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe
Q 040987 330 NEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL 408 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (762)
..++...+....+.++.+.+-|..+.|.+++| .|+.++++.++..+.+++|+..+..+..+.+|...|.++....+|-+
T Consensus 300 taeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~l 379 (775)
T KOG0319|consen 300 TAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDL 379 (775)
T ss_pred EccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcE
Confidence 11112222233455666777888899999998 46778999999999999999999999999999999999997778899
Q ss_pred EEEEecCCcEEEEEcCCce----EEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceee
Q 040987 409 SSISCADNQVHLLKMPSME----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
|++++.|+++++|.++.+. ++....+|. +.|.+++++..+ .++++++.|+++++|++...+....
T Consensus 380 lat~sKD~svilWr~~~~~~~~~~~a~~~gH~----------~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~ 449 (775)
T KOG0319|consen 380 LATGSKDKSVILWRLNNNCSKSLCVAQANGHT----------NSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF 449 (775)
T ss_pred EEEecCCceEEEEEecCCcchhhhhhhhcccc----------cccceeeecccCccEEEEecCCceEEEecCCCcccccc
Confidence 9999999999999885432 334455665 788999997654 5799999999999999987333222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+...........|...|++++++|+.+++|+++ .|.+.++|+++.......+ .|| ...|.++.|
T Consensus 450 -~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---------qDktaKiW~le~~~l~~vL-----sGH-~RGvw~V~F 513 (775)
T KOG0319|consen 450 -PIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---------QDKTAKIWDLEQLRLLGVL-----SGH-TRGVWCVSF 513 (775)
T ss_pred -cceehhhHHHHhhcccccceEecCCCceEEecc---------cccceeeecccCceEEEEe-----eCC-ccceEEEEe
Confidence 111100001112377899999999999999999 8999999999966655554 799 999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEE
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
+|..+.++++|.|++|+||.+.+..+.+.+ .+|...|..+.|-.+|+.|++++ ||-+++|++++++|+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~-----------eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTF-----------EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECE 582 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeee-----------cCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhh
Confidence 999999999999999999999977766555 58999999999999999999987 999999999999999
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.++.+|++.|++++-++++.+++||+.||. |.+|.=.|.
T Consensus 583 ~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~--i~~wkD~Te 621 (775)
T KOG0319|consen 583 MTLDAHNDRVWALSVSPLLDMFVTGGGDGR--IIFWKDVTE 621 (775)
T ss_pred hhhhhccceeEEEeecCccceeEecCCCeE--EEEeecCcH
Confidence 999999999999999999999999999998 999965543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=388.74 Aligned_cols=542 Identities=14% Similarity=0.194 Sum_probs=423.2
Q ss_pred cccccccccceEEEEeeeeeE-EEEEEeecCCcceeEEEEecCCCeEEEEecCCccee---eeecCcccccCCceeecCC
Q 040987 10 RASSHQSIQNKFIISKLKAIK-IHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK---MIRGGRSYVSSPPAFSNDV 85 (762)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~---~~~~h~~~v~~~~~~s~dg 85 (762)
++.+-..++++....-..++. ......-+|. +.|+|+|...|.||+|+......+ .++--.++|.. ++|+.|+
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkySPs--G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~D-i~Wd~ds 115 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYSPS--GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKD-ISWDFDS 115 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeCCC--ceEEeecCCcCcEEEEeccCcceeeeeeeeeccccccc-ceeCCCC
Confidence 333333444444333333333 3334444555 889999999999999998874443 34566789997 9999999
Q ss_pred CEEEEEeC-----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEE
Q 040987 86 KRLLVCTS-----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTID 160 (762)
Q Consensus 86 ~~la~~~~-----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~ 160 (762)
++|++.++ |.+..|| +|.-+..+.||...|++++|-|..+ --++||++|++|.+++=.-.+...++.
T Consensus 116 ~RI~avGEGrerfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRP------fRi~T~sdDn~v~ffeGPPFKFk~s~r 187 (603)
T KOG0318|consen 116 KRIAAVGEGRERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRP------FRIATGSDDNTVAFFEGPPFKFKSSFR 187 (603)
T ss_pred cEEEEEecCccceeEEEEec--CCCccceeeccceeEeeeeccCCCc------eEEEeccCCCeEEEeeCCCeeeeeccc
Confidence 99998884 5788888 7888999999999999999999986 457799999999999876667777787
Q ss_pred ecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee---ccCC
Q 040987 161 VKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL---AEMK 236 (762)
Q Consensus 161 ~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~---~~~~ 236 (762)
.|. -|.++.| ++|+..- ++.+.||.+.+||-.+|+.+ ..+. +|.+
T Consensus 188 ~HskFV~~VRy--------sPDG~~F----------------------at~gsDgki~iyDGktge~v-g~l~~~~aHkG 236 (603)
T KOG0318|consen 188 EHSKFVNCVRY--------SPDGSRF----------------------ATAGSDGKIYIYDGKTGEKV-GELEDSDAHKG 236 (603)
T ss_pred ccccceeeEEE--------CCCCCeE----------------------EEecCCccEEEEcCCCccEE-EEecCCCCccc
Confidence 787 7778877 5666532 67889999999999999998 4444 7999
Q ss_pred CceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccC--cCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 237 EPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHT--KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 237 ~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
.|.+++|+||++.++ ++.|.+++|||+.+.++. ..+..+.. +.-..+-|. ...|++-+-+|.|.+++....
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv----~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~ 310 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLV----STWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP 310 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceE----EEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC
Confidence 999999999999998 568999999999998754 22222222 344555665 446888999999999998554
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--C
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--P 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~ 391 (762)
.+...+.+|...|+++..++|+++|++|+.||.|.-|+..++..-.+ .
T Consensus 311 ------------------------------~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 311 ------------------------------SVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred ------------------------------ChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccc
Confidence 35578999999999999999999999999999999999999987655 5
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
.|...|.+++.+..+. +++.+.|.++++.++......... +-. ....+++..+++.+++..+.++.
T Consensus 361 ~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg-----------~QP~~lav~~d~~~avv~~~~~i 428 (603)
T KOG0318|consen 361 GHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSEVVKLG-----------SQPKGLAVLSDGGTAVVACISDI 428 (603)
T ss_pred cccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccceeecC-----------CCceeEEEcCCCCEEEEEecCcE
Confidence 6888999999876555 455668999999988653322221 111 23358899999887777776664
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.+=|... +.++.. .....+++++|+++.+++|+ .|+.|++|.+.......+..
T Consensus 429 v~l~~~~~---~~~~~~-----------~y~~s~vAv~~~~~~vaVGG---------~Dgkvhvysl~g~~l~ee~~--- 482 (603)
T KOG0318|consen 429 VLLQDQTK---VSSIPI-----------GYESSAVAVSPDGSEVAVGG---------QDGKVHVYSLSGDELKEEAK--- 482 (603)
T ss_pred EEEecCCc---ceeecc-----------ccccceEEEcCCCCEEEEec---------ccceEEEEEecCCcccceee---
Confidence 44433332 222221 44578999999999999999 89999999999876543322
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
...| .+.|++++||||+.+||++...+.+.+||..+.+.... .| ..|...|.+++|||+.+++|+|+ |
T Consensus 483 ~~~h-~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~----~w------~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 483 LLEH-RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN----RW------AFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred eecc-cCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc----ee------eeeeeeEEEEEeCCCceEEEecccc
Confidence 2578 99999999999999999999999999999998876322 33 34789999999999999999999 9
Q ss_pred CeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 629 TVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 629 ~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..|.||+++.. +.+.....|...|+.+.|-.+ ..|++++.|.. |++|++.
T Consensus 552 t~Viiysv~kP~~~i~iknAH~~gVn~v~wlde-~tvvSsG~Da~--iK~W~v~ 602 (603)
T KOG0318|consen 552 TNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE-STVVSSGQDAN--IKVWNVT 602 (603)
T ss_pred ceEEEEEccChhhheEeccccccCceeEEEecC-ceEEeccCcce--eEEeccc
Confidence 99999999875 345555679989999999875 57999999998 9999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-51 Score=405.81 Aligned_cols=546 Identities=15% Similarity=0.169 Sum_probs=418.8
Q ss_pred cceEEEEeeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEE
Q 040987 18 QNKFIISKLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVS 97 (762)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~ 97 (762)
.|+.+.-.+...........+|+ +.++.+-.+.|.+.+.++...........+..|.+ +.|||||+++|.+.++.+.
T Consensus 44 nN~S~Tl~~e~~~NI~~ialSp~--g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~-i~fSPng~~fav~~gn~lq 120 (893)
T KOG0291|consen 44 NNKSYTLPLETRYNITRIALSPD--GTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGA-IKFSPNGKFFAVGCGNLLQ 120 (893)
T ss_pred CCcceeEEeecCCceEEEEeCCC--ceEEEEEcCCCcEEEEecccceeeEEEeecCccce-EEECCCCcEEEEEecceeE
Confidence 33334444444455556677777 66777788999999999998777777777889997 9999999999999999999
Q ss_pred EEEcccc--------eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcce--EEEEEecc-ceE
Q 040987 98 IFSTSTG--------LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPEL--LKTIDVKF-SIF 166 (762)
Q Consensus 98 iwd~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~--~~~~~~~~-~v~ 166 (762)
||..... .+.+++.||...|+++.|+.|. ++|++||.|.++++|+++..+- ...+.+|. .|.
T Consensus 121 iw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DS-------r~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vv 193 (893)
T KOG0291|consen 121 IWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDS-------RLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVV 193 (893)
T ss_pred EEecCcchhcccCcceEeeeecCCccceeEEEeccCC-------ceEEeccccceEEEEEeccccccceEeccCCCcceE
Confidence 9997432 2457788999999999999999 7899999999999999987665 33344444 444
Q ss_pred EEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCC
Q 040987 167 SMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246 (762)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd 246 (762)
+..| +.+.... ++-+.||.+.+|.................. +.|
T Consensus 194 acfF--------~~~~~~l----------------------~tvskdG~l~~W~~~~~P~~~~~~~kd~eg------~~d 237 (893)
T KOG0291|consen 194 ACFF--------GANSLDL----------------------YTVSKDGALFVWTCDLRPPELDKAEKDEEG------SDD 237 (893)
T ss_pred EEEe--------ccCcceE----------------------EEEecCceEEEEEecCCCcccccccccccc------ccc
Confidence 4433 1111110 334566666666544321110000000000 000
Q ss_pred CCEEEEEeC-CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccc
Q 040987 247 GKYFGIRKQ-RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 247 g~~la~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
....-=+.. -.=.+|... .+..+......|++.+|++..+.||+|-..|...+|.+.+-
T Consensus 238 ~~~~~~~Eek~~~~~~~k~--------~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f------------ 297 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKT--------KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDF------------ 297 (893)
T ss_pred ccccccchhhhcceEEEEE--------EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCc------------
Confidence 000000000 000011110 01233344578999999999999999999999999998543
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEEEecCCCcee-ccCCCCCCeEEEEeC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKK-FLPRIGSPLLYFTES 403 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s 403 (762)
.+++.+.-....|..++|+..|.+|+.|+.. |++-+|+..+...+ ...+|-..+.+++++
T Consensus 298 ------------------~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YS 359 (893)
T KOG0291|consen 298 ------------------NLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYS 359 (893)
T ss_pred ------------------eEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEEC
Confidence 3456666666789999999999999998865 89999999887764 567788999999999
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
|||+++++|+.||.|+|||..++-+..+|..|. ..|+.+.|+..|+.+++.+-||+|+.||+...+..++
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHt----------s~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRT 429 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHT----------SGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRT 429 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEeccCC----------CceEEEEEEecCCEEEEeecCCeEEeeeecccceeee
Confidence 999999999999999999999999999999998 8999999999999999999999999999999888877
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+..+. .....+++..|.|..+.+|+. +.-.|.+|++++++.+-.+ .|| .++|.+++|
T Consensus 430 ft~P~---------p~QfscvavD~sGelV~AG~~--------d~F~IfvWS~qTGqllDiL-----sGH-EgPVs~l~f 486 (893)
T KOG0291|consen 430 FTSPE---------PIQFSCVAVDPSGELVCAGAQ--------DSFEIFVWSVQTGQLLDIL-----SGH-EGPVSGLSF 486 (893)
T ss_pred ecCCC---------ceeeeEEEEcCCCCEEEeecc--------ceEEEEEEEeecCeeeehh-----cCC-CCcceeeEE
Confidence 76543 345789999999999999984 5568999999999887665 799 999999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEccccc-ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
+|++..|+++++|.+|++||+-... ....+ .+...+..++|+|||+-||+++ ||.|.+||.+.+..
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETL------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQ 554 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeE------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhcee
Confidence 9999999999999999999986542 22222 2567899999999999999999 99999999988766
Q ss_pred EEEeccc--------------------cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 642 VAVIGET--------------------LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 642 ~~~l~~~--------------------~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+..+.+- ....+.+++|+||..|++||..+. |++|++.++-++..++...+
T Consensus 555 ~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~--iCiY~v~~~vllkkfqiS~N 625 (893)
T KOG0291|consen 555 VGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS--ICIYDVPEGVLLKKFQISDN 625 (893)
T ss_pred eccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc--EEEEECchhheeeeEEeccc
Confidence 6444321 234889999999999999999998 99999999999999887766
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-53 Score=415.13 Aligned_cols=540 Identities=15% Similarity=0.211 Sum_probs=406.2
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceE-Eeee-cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQ-ISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~-~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
++||++|+.|++.....|.+-|++++.. +... ..-...+++++.+||+ .+|++++....+++|++.+|+++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~-------~~L~~a~rs~llrv~~L~tgk~i 97 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDE-------EVLVTASRSQLLRVWSLPTGKLI 97 (775)
T ss_pred eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCc-------cEEEEeeccceEEEEEcccchHh
Confidence 7899999999999999999999999987 4433 3456789999999999 78899999999999999999999
Q ss_pred EEEEe-cc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeecc
Q 040987 157 KTIDV-KF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAE 234 (762)
Q Consensus 157 ~~~~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~ 234 (762)
+..+. |. |+..|+|. +.+. + +++|+.|+.+++||+..+.+. ..+.+|
T Consensus 98 rswKa~He~Pvi~ma~~--------~~g~----L------------------lAtggaD~~v~VWdi~~~~~t-h~fkG~ 146 (775)
T KOG0319|consen 98 RSWKAIHEAPVITMAFD--------PTGT----L------------------LATGGADGRVKVWDIKNGYCT-HSFKGH 146 (775)
T ss_pred HhHhhccCCCeEEEEEc--------CCCc----e------------------EEeccccceEEEEEeeCCEEE-EEecCC
Confidence 99988 55 89888771 1110 1 178999999999999999999 889999
Q ss_pred CCCceEEEECCCCCE--EEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 235 MKEPQVITISSSGKY--FGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 235 ~~~v~~~~~spdg~~--la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+.|.++.|.|+-.+ |++ +.|+.+++||+.+... .......|...|++++|++|+..+++++.|..+.+||+.
T Consensus 147 gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~ 222 (775)
T KOG0319|consen 147 GGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLV 222 (775)
T ss_pred CceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehh
Confidence 999999999998765 444 4799999999996553 126677899999999999999999999999999999985
Q ss_pred CCceeecc---cccccccccccccCCC-Cccc-CCccccceeeec--------c----ccceeEEEEecCCCEEEEEecC
Q 040987 312 GDRTFATN---DNKMNLNLMNNEEERP-GVRD-NDDADLCTTWHW--------H----PSEVSVLIFSSDGAYLYSGGKE 374 (762)
Q Consensus 312 ~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~--------h----~~~v~~~~~s~~g~~l~s~~~d 374 (762)
..+..... +............... .... .......+.+.. . ...+..+...+..+.++....|
T Consensus 223 ~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae 302 (775)
T KOG0319|consen 223 QYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAE 302 (775)
T ss_pred hhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEcc
Confidence 54332111 1100000000000000 0000 000000000000 0 0002222222222233333344
Q ss_pred CeEEEEecCCCcee-ccCCCCCCeEEEEe-CCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 375 GVLVVWQLDTGKKK-FLPRIGSPLLYFTE-SPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 375 g~i~~wd~~~~~~~-~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.++.++|.++.+.. .+.+..+.|..+.| .|+.++++++++.+.+++|+..+..+. .+.+|. ..|.++
T Consensus 303 Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~----------e~vlSL 371 (775)
T KOG0319|consen 303 QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHT----------EAVLSL 371 (775)
T ss_pred ceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCch----------hheeee
Confidence 44444444444442 34455567777776 677889999999999999998877665 778877 788999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i 531 (762)
....+|-+|++++.|.++++|.+.++...........+| ...|.+++++..+ .+|++++ .|.++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH------~~svgava~~~~~asffvsvS---------~D~tl 436 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH------TNSVGAVAGSKLGASFFVSVS---------QDCTL 436 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc------ccccceeeecccCccEEEEec---------CCceE
Confidence 877788899999999999999995554333333333333 7889999997755 5788888 99999
Q ss_pred EEEEecCCCceeEEEEE----eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 532 KFWVSGTQNKEFTLSTI----VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~----~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
++|++...+.......+ ....| ...|++++++|+.+++|+||.|++.+||++........ +.+|
T Consensus 437 K~W~l~~s~~~~~~~~~~~~~t~~aH-dKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v-----------LsGH 504 (775)
T KOG0319|consen 437 KLWDLPKSKETAFPIVLTCRYTERAH-DKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV-----------LSGH 504 (775)
T ss_pred EEecCCCcccccccceehhhHHHHhh-cccccceEecCCCceEEecccccceeeecccCceEEEE-----------eeCC
Confidence 99999873332211111 23578 89999999999999999999999999999996665544 4689
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...|.++.|+|..+.+|+++ |++|+||.+++..|+.++.||...|..+.|-.+|+.|+|++.||. +++|++++++.+
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGl--iKlWnikt~eC~ 582 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGL--IKLWNIKTNECE 582 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCc--EEEEeccchhhh
Confidence 99999999999999999998 999999999999999999999999999999999999999999998 999999999999
Q ss_pred eEEEEeecceeeee
Q 040987 687 WSYLLHVEGQFGYA 700 (762)
Q Consensus 687 ~~~~~~~~~~~~~~ 700 (762)
.++..|.+...+..
T Consensus 583 ~tlD~H~DrvWaL~ 596 (775)
T KOG0319|consen 583 MTLDAHNDRVWALS 596 (775)
T ss_pred hhhhhccceeEEEe
Confidence 99999987554443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-52 Score=408.99 Aligned_cols=560 Identities=15% Similarity=0.170 Sum_probs=437.0
Q ss_pred eeEEEEecCCCeEEEEecCCc---ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCcccee
Q 040987 43 SFIFAVARSSGLCRTAEYPAV---NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~---~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~ 118 (762)
+.++|+ ...-.|.+||+.++ +.+....-+..|+| +.-++|.-+||.|. ||.|+||+..++..+-++.||..+|+
T Consensus 34 Gr~va~-~a~E~vn~WdlRtge~~~~l~~~~~k~evt~-l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt 111 (888)
T KOG0306|consen 34 GRAVAV-SALEQVNIWDLRTGEIEKKLILLKKKAEVTC-LRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVT 111 (888)
T ss_pred CcEEEE-eccccEeEEeeecchhhhhhhhhcccceEEE-eeccCCcceEEEEecCceEEeeccCCCceeeeecccccceE
Confidence 445555 22366789999988 33444556678887 88889999999999 89999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
++.|...| ..|+|||.|+.|.+||+-...-+..+++|. .++.+-|- .+.
T Consensus 112 ~l~fd~~G-------~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~--------~~~--------------- 161 (888)
T KOG0306|consen 112 TLKFDKIG-------TRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL--------NGD--------------- 161 (888)
T ss_pred EEEEcccC-------ceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc--------CCC---------------
Confidence 99999999 678899999999999999999999999987 66655441 000
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhh--------
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAE-------- 269 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~-------- 269 (762)
.|.++.+.|+.|++||+++..|. .....|.+.++++++.+ ...++++.++.+.+|++....-.
T Consensus 162 -------~~lvS~sKDs~iK~WdL~tqhCf-~Thvd~r~Eiw~l~~~~-~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s 232 (888)
T KOG0306|consen 162 -------SFLVSVSKDSMIKFWDLETQHCF-ETHVDHRGEIWALVLDE-KLLVTAGTDSELKVWELAFEDDEKETNRYIS 232 (888)
T ss_pred -------eEEEEeccCceEEEEecccceee-eEEecccceEEEEEEec-ceEEEEecCCceEEEEeecccccccccccce
Confidence 01167789999999999999999 77888999999999998 44556789999999999321100
Q ss_pred hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecc------------------------------
Q 040987 270 RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATN------------------------------ 319 (762)
Q Consensus 270 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~------------------------------ 319 (762)
......+.....+....++..+++++++.-+.|..+.++.+.........
T Consensus 233 ~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~ 312 (888)
T KOG0306|consen 233 TKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIK 312 (888)
T ss_pred eeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHH
Confidence 01222344455566667777888899999899999999987554211000
Q ss_pred --------cccccccccccccCC-------------CCccc--CCcccc----ceeeeccccceeEEEEecCCCEEEEEe
Q 040987 320 --------DNKMNLNLMNNEEER-------------PGVRD--NDDADL----CTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 320 --------~~~~~~~~~~~~~~~-------------~~~~~--~~~~~~----~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
............... ..+.. ...+++ ...+.+|...|.+++++.+...+++++
T Consensus 313 r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga 392 (888)
T KOG0306|consen 313 RLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA 392 (888)
T ss_pred HHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC
Confidence 000000000000000 00000 000111 134678999999999999987777765
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
. +.+++|+.++.++....... .+.+..|-|.+++++.|...|.+.+||+.+...+.++..|. +.+.++
T Consensus 393 ~-~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHd----------gaIWsi 460 (888)
T KOG0306|consen 393 G-ESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHD----------GAIWSI 460 (888)
T ss_pred C-CcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccc----------cceeee
Confidence 4 78999999999987655554 78889999999999999999999999999999988888877 899999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
+.+||++.+++++.|.+|++||..-- .....+... |...-.....|.|+.+||||++||++- -
T Consensus 461 ~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~---~~rtLel~ddvL~v~~Spdgk~LaVsL---------L 528 (888)
T KOG0306|consen 461 SLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLK---HTRTLELEDDVLCVSVSPDGKLLAVSL---------L 528 (888)
T ss_pred eecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeec---cceEEeccccEEEEEEcCCCcEEEEEe---------c
Confidence 99999999999999999999997421 111111110 000011256799999999999999998 8
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
|+++++|-+++-+....+ .|| .-+|.|+..|||++++++||.|.+|++|-++-|.+.+.+ .+|
T Consensus 529 dnTVkVyflDtlKFflsL-----YGH-kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-----------fAH 591 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSL-----YGH-KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-----------FAH 591 (888)
T ss_pred cCeEEEEEecceeeeeee-----ccc-ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-----------hcc
Confidence 899999999988765554 799 999999999999999999999999999999988865554 589
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...|.++.|-|+..++.+++ |+.|+-||-+..++++.+.+|...|++++.+|+|.+++++|.|.. |++|......+.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~s--IRlwE~tde~~~ 669 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS--IRLWERTDEILI 669 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCce--eEeeeccCccee
Confidence 99999999999999999998 999999999999999999999999999999999999999999998 999987664443
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=376.02 Aligned_cols=544 Identities=13% Similarity=0.100 Sum_probs=406.7
Q ss_pred ceEEEEeeee--eEEEEEEeecCCcceeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecCCCEEEEEe-CC
Q 040987 19 NKFIISKLKA--IKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-SN 94 (762)
Q Consensus 19 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~~ 94 (762)
.+.+...+.. +.....+.-.|..+.+++.-| ..|.+-++++.... .+.+|...++- ..|||.|-|+|+|. .|
T Consensus 6 lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nG---ksv~ir~i~~~~~~~iYtEH~~~vtV-AkySPsG~yiASGD~sG 81 (603)
T KOG0318|consen 6 LKETFASLPSTERGVPIIIGGDPKGDNILYTNG---KSVIIRNIDNPASVDIYTEHAHQVTV-AKYSPSGFYIASGDVSG 81 (603)
T ss_pred hhhhccCCCcccCCcceEeccCCCCCeEEEeCC---CEEEEEECCCccceeeeccccceeEE-EEeCCCceEEeecCCcC
Confidence 3344444433 333444444555444333333 55666777765554 44789888886 99999999999999 69
Q ss_pred EEEEEEcccce-E-EeeecCCccceeEEEEeCCCCcccceeeeEEee-ecCCeEEEEeCCCcceEEEEEecc-ceEEEee
Q 040987 95 TVSIFSTSTGL-Q-ISSLEGHKAPVTTVIVVPASTPATKILSYCWTA-SLDGTIKYWDFSVPELLKTIDVKF-SIFSMVI 170 (762)
Q Consensus 95 ~i~iwd~~~~~-~-~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~-s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~ 170 (762)
.|+|||....+ . -.+++.-.++|..++|++|++ +++|+| +.++-.+++-+++|..+..+.+|. .+.++.|
T Consensus 82 ~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~------RI~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~ 155 (603)
T KOG0318|consen 82 KVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSK------RIAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF 155 (603)
T ss_pred cEEEEeccCcceeeeeeeeecccccccceeCCCCc------EEEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence 99999985533 2 246777889999999999996 444555 345555666666899999999998 6777755
Q ss_pred cccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE
Q 040987 171 PSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF 250 (762)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l 250 (762)
...+|..+ ++|+.|+.|.+|+-.-.+-. .....|..-|+|+.|+|||.++
T Consensus 156 ----------KpsRPfRi-------------------~T~sdDn~v~ffeGPPFKFk-~s~r~HskFV~~VRysPDG~~F 205 (603)
T KOG0318|consen 156 ----------KPSRPFRI-------------------ATGSDDNTVAFFEGPPFKFK-SSFREHSKFVNCVRYSPDGSRF 205 (603)
T ss_pred ----------cCCCceEE-------------------EeccCCCeEEEeeCCCeeee-ecccccccceeeEEECCCCCeE
Confidence 22222111 78999999999987666555 5667789999999999999999
Q ss_pred E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccc
Q 040987 251 G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMN 329 (762)
Q Consensus 251 a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 329 (762)
| ++.|+++.+||-.+++.. -...-..+|.+.|.+++|+||++.+++++.|.+++|||+.+.+...
T Consensus 206 at~gsDgki~iyDGktge~v--g~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~------------ 271 (603)
T KOG0318|consen 206 ATAGSDGKIYIYDGKTGEKV--GELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS------------ 271 (603)
T ss_pred EEecCCccEEEEcCCCccEE--EEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE------------
Confidence 8 679999999999999865 1111134899999999999999999999999999999998875443
Q ss_pred cccCCCCcccCCccccceeeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCC
Q 040987 330 NEEERPGVRDNDDADLCTTWHWH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPD 405 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~ 405 (762)
++.-. .+.-..+.|. ...|++.+.+|+|.+++....... .+.+|...|+++..++|
T Consensus 272 ------------------t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 272 ------------------TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred ------------------EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 22211 1223345564 558999999999999999888764 57789999999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+++|++++.||.|.-|+..++..-+.. ++|. ..|.+++-+..+. +++.+.|.++++.++..+......
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~----------nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~ 400 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHT----------NQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE 400 (603)
T ss_pred CCEEEeeccCceEEEEecCCcccccccccccc----------ceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc
Confidence 999999999999999999987665543 4444 7888888876554 677788889999988655433222
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
.... .....+++..+++.+++.+. . ..|.+..-.+. ...... .-...+++++
T Consensus 401 ~~~l---------g~QP~~lav~~d~~~avv~~---------~-~~iv~l~~~~~--~~~~~~-------~y~~s~vAv~ 452 (603)
T KOG0318|consen 401 VVKL---------GSQPKGLAVLSDGGTAVVAC---------I-SDIVLLQDQTK--VSSIPI-------GYESSAVAVS 452 (603)
T ss_pred eeec---------CCCceeEEEcCCCCEEEEEe---------c-CcEEEEecCCc--ceeecc-------ccccceEEEc
Confidence 1111 23345888999987777775 2 34444442222 222211 3456789999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
|++..++.|+.|+.|+||.+......... ....|.+.|++++||||+.+||++. .+.+.+||+++.+...
T Consensus 453 ~~~~~vaVGG~Dgkvhvysl~g~~l~ee~---------~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~ 523 (603)
T KOG0318|consen 453 PDGSEVAVGGQDGKVHVYSLSGDELKEEA---------KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT 523 (603)
T ss_pred CCCCEEEEecccceEEEEEecCCccccee---------eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec
Confidence 99999999999999999999886653321 2345899999999999999999999 9999999999987644
Q ss_pred E-eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 644 V-IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 644 ~-l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
. ..-|...|.+++|+|+.+++|++|.|.. |.||+++.....
T Consensus 524 ~~w~FHtakI~~~aWsP~n~~vATGSlDt~--Viiysv~kP~~~ 565 (603)
T KOG0318|consen 524 NRWAFHTAKINCVAWSPNNKLVATGSLDTN--VIIYSVKKPAKH 565 (603)
T ss_pred ceeeeeeeeEEEEEeCCCceEEEeccccce--EEEEEccChhhh
Confidence 3 3449999999999999999999999998 999999875443
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=369.30 Aligned_cols=327 Identities=20% Similarity=0.284 Sum_probs=293.2
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|.|++|+|+|+.|++|+.|.++++||+.+.. +..+.++|..
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT------------------------------p~~t~KgH~~ 158 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET------------------------------PLFTCKGHKN 158 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC------------------------------cceeecCCcc
Confidence 5567999999999999999999999999999999997763 4578999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCC-----CCCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESP-----DPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+|||+.|++|+.||+|++||.++|+.. .+.+|...|++++|.| ..++|++++.||.++|||+..+.
T Consensus 159 WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 159 WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred EEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 9999999999999999999999999999999884 6889999999999965 67899999999999999999999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
++..+.+|. ..|+++.|--+| +|++++.|++|++|+...+....++.. | ...|+.++++
T Consensus 239 ~~~~lsgHT----------~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkG----H------ahwvN~lals 297 (480)
T KOG0271|consen 239 CVRTLSGHT----------ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKG----H------AHWVNHLALS 297 (480)
T ss_pred EEEEeccCc----------cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcc----c------chheeeeecc
Confidence 999999998 788999998765 899999999999999998876665543 2 5567776665
Q ss_pred -----------cCCC-------------------------eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 508 -----------QDGS-------------------------LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 508 -----------p~g~-------------------------~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
|.++ .|++++ .|.++.+|+....+....- ..
T Consensus 298 Tdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs---------Dd~tlflW~p~~~kkpi~r----mt 364 (480)
T KOG0271|consen 298 TDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS---------DDFTLFLWNPFKSKKPITR----MT 364 (480)
T ss_pred chhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec---------CCceEEEecccccccchhh----hh
Confidence 3333 499998 8999999998766543222 26
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
+| ..-|+.+.||||++++|+++.|..|++||..+|+.+..+ .+|-..|+.++||.|.++|++|+ |.+
T Consensus 365 gH-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasf-----------RGHv~~VYqvawsaDsRLlVS~SkDsT 432 (480)
T KOG0271|consen 365 GH-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASF-----------RGHVAAVYQVAWSADSRLLVSGSKDST 432 (480)
T ss_pred ch-hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhh-----------hhccceeEEEEeccCccEEEEcCCCce
Confidence 89 999999999999999999999999999999999988776 47999999999999999999999 999
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+++|++.+.++...|.||.+.|.++.|+|||+.+++++.|.. +++|.
T Consensus 433 LKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv--~~lw~ 479 (480)
T KOG0271|consen 433 LKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKV--LRLWR 479 (480)
T ss_pred EEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceE--EEeec
Confidence 999999999999999999999999999999999999999998 99994
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-51 Score=369.92 Aligned_cols=331 Identities=18% Similarity=0.245 Sum_probs=293.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
..+.||.+.|.| ++|||+|++||+|+ |.++++||+.|..++++.++|...|.|++|+||| +.||||+.||+
T Consensus 109 sS~~GH~e~Vl~-~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDg-------k~iASG~~dg~ 180 (480)
T KOG0271|consen 109 SSIAGHGEAVLS-VQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDG-------KKIASGSKDGS 180 (480)
T ss_pred cccCCCCCcEEE-EEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCc-------chhhccccCCe
Confidence 357999999998 99999999999999 7999999999999999999999999999999999 78899999999
Q ss_pred EEEEeCCCcceE-EEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 145 IKYWDFSVPELL-KTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 145 i~vWd~~~~~~~-~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
|++||.++|+++ +.+.+|. .|+++++..+-..+.+. . +|+++.||.++|||+.
T Consensus 181 I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r---~----------------------las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 181 IRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCR---R----------------------LASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEecCCCCCcccccccCcccceeEEeecccccCCCcc---c----------------------eecccCCCCEEEEEcc
Confidence 999999998766 5688887 89988773322211110 0 1889999999999999
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc-----------C
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH-----------P 291 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-----------p 291 (762)
.+.++ ..+.+|+..|+|+.|-.+|-+..++.|++|++|+...+.+. +.+.+|...|+.++.+ |
T Consensus 236 ~~~~~-~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~-----r~lkGHahwvN~lalsTdy~LRtgaf~~ 309 (480)
T KOG0271|consen 236 LGTCV-RTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLC-----RELKGHAHWVNHLALSTDYVLRTGAFDH 309 (480)
T ss_pred CceEE-EEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHH-----Hhhcccchheeeeeccchhhhhcccccc
Confidence 99999 78899999999999988775444668999999999998877 8889999999999987 2
Q ss_pred CC-------------------------cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 292 TQ-------------------------RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 292 ~~-------------------------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
.+ ..|++|+.|.++.+|+....+ +++
T Consensus 310 t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-----------------------------kpi 360 (480)
T KOG0271|consen 310 TGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-----------------------------KPI 360 (480)
T ss_pred ccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc-----------------------------cch
Confidence 22 359999999999999964332 466
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.+|..-|+.+.||||++++++++.|..|++||.++|+... +.+|-..|+.++|+.|.++|++++.|.++++|++++
T Consensus 361 ~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 361 TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 7899999999999999999999999999999999999999864 666999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
.++...+.+|. ..|.++.|+|||..+++++.|..+++|.
T Consensus 441 kKl~~DLpGh~----------DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHA----------DEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCC----------ceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999988 7899999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=370.40 Aligned_cols=450 Identities=19% Similarity=0.327 Sum_probs=382.4
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT 158 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~ 158 (762)
+.|++||.-+.+..++.|.|+|+.+.+-...--.+...|++++.||+| .+|++..+.|...+-++.....++.
T Consensus 20 l~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g-------~lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 20 LVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDG-------TLLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred EEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCc-------eEEEEEcCCCcEEEEecccceeeEE
Confidence 889999999999999999999998877655445677889999999999 6778888888888877766655555
Q ss_pred EEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCc
Q 040987 159 IDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEP 238 (762)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v 238 (762)
+.. ...|
T Consensus 93 f~f-------------------------------------------------------------------------k~~v 99 (893)
T KOG0291|consen 93 FNF-------------------------------------------------------------------------KRGV 99 (893)
T ss_pred Eee-------------------------------------------------------------------------cCcc
Confidence 432 4567
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchh---hhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEA---ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.++.|||||+++|++..+.+.||..+.... .+....+...+|...|.++.|+.|.++|++|+.|-.+++|.++..+.
T Consensus 100 ~~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~ 179 (893)
T KOG0291|consen 100 GAIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN 179 (893)
T ss_pred ceEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc
Confidence 889999999999999999999999875443 23344566779999999999999999999999999999999876654
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-----------
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT----------- 384 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----------- 384 (762)
+. ...+.+|.+.|..+-|..+...+++.+.||.+.+|....
T Consensus 180 ~~----------------------------~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 180 LF----------------------------TYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred cc----------------------------eEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 32 367889999999999999999999999999999997661
Q ss_pred ------------Cce------------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 385 ------------GKK------------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 385 ------------~~~------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
++. ..+......+++.+|++..+.|+++-..|...+|++....+++.+.-..
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~---- 307 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD---- 307 (893)
T ss_pred ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc----
Confidence 111 1122233678999999999999999999999999999999999987655
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecC-ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAEN-YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
..|..++|+..|.+||.++.. |++-+|+..+..-+.+. ++| ...+.+++++|||+++|+|+
T Consensus 308 ------~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQ----QgH------~~~i~~l~YSpDgq~iaTG~-- 369 (893)
T KOG0291|consen 308 ------QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQ----QGH------SDRITSLAYSPDGQLIATGA-- 369 (893)
T ss_pred ------ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeec----ccc------ccceeeEEECCCCcEEEecc--
Confidence 688999999999999999866 89999999876544433 233 77899999999999999999
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+.|++||..++-+..++ ..| ...|+.+.|+.+|+.+++.+.||+|+.||+......+.+.
T Consensus 370 -------eDgKVKvWn~~SgfC~vTF-----teH-ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft----- 431 (893)
T KOG0291|consen 370 -------EDGKVKVWNTQSGFCFVTF-----TEH-TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT----- 431 (893)
T ss_pred -------CCCcEEEEeccCceEEEEe-----ccC-CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec-----
Confidence 9999999999999887776 568 9999999999999999999999999999998877666552
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-C-CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-E-TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
........+++..|.|.++..|+ | -.|++|++++|+++-.+.||.+||.+++|+|+|..|+++|.|.+ |++
T Consensus 432 -----~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT--VRi 504 (893)
T KOG0291|consen 432 -----SPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT--VRI 504 (893)
T ss_pred -----CCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce--EEE
Confidence 11234456888899999999998 5 68999999999999999999999999999999999999999999 999
Q ss_pred EECCCC
Q 040987 678 WNMSKL 683 (762)
Q Consensus 678 wd~~~~ 683 (762)
||+-..
T Consensus 505 W~if~s 510 (893)
T KOG0291|consen 505 WDIFSS 510 (893)
T ss_pred EEeecc
Confidence 999765
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-47 Score=373.02 Aligned_cols=474 Identities=17% Similarity=0.209 Sum_probs=373.5
Q ss_pred EEEeecCCcceeEEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 33 ILIERKPRSRSFIFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 33 ~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
...+..+.++..++|+||.||.|++|+..+. ...++.||+..|++ +.|+..|..||+|+ |+.|.+||+-...-+..|
T Consensus 67 evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~-l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~rL 145 (888)
T KOG0306|consen 67 EVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTT-LKFDKIGTRLASGSKDTDIIVWDLVGEEGLFRL 145 (888)
T ss_pred eEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEE-EEEcccCceEeecCCCccEEEEEeccceeeEEe
Confidence 4555556566889999999999999999864 44577999999998 99999999999999 899999999888888999
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecc-cccCCcccCCCCCceE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPS-LLRQPAQSDEKPPKLF 188 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~~~~~~ 188 (762)
.||...|+..-|..+. ++|++.|.|+.|++||+.+..|..+.-.|. .++.+++.. ++-.......-..+-+
T Consensus 146 ~GHkd~iT~~~F~~~~-------~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L 218 (888)
T KOG0306|consen 146 RGHKDSITQALFLNGD-------SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWEL 218 (888)
T ss_pred ecchHHHhHHhccCCC-------eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEe
Confidence 9999999999999977 799999999999999999999999987776 888887733 1111111111111112
Q ss_pred EEEEee-------------e------c---cccCcCCccCC---------------------------------------
Q 040987 189 AYLSVE-------------D------T---RETTKSHKKEP--------------------------------------- 207 (762)
Q Consensus 189 ~~~~~~-------------~------~---~~~~~~~~~~~--------------------------------------- 207 (762)
++-.+. . . .......--|.
T Consensus 219 ~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e 298 (888)
T KOG0306|consen 219 AFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEE 298 (888)
T ss_pred ecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccc
Confidence 111111 0 0 00000000000
Q ss_pred --------------------------------CCC-------CccccEEEEecCC-ccc-c------ceeeeccCCCceE
Q 040987 208 --------------------------------RPN-------TMNGRICKCNLTE-SRL-A------GGVTLAEMKEPQV 240 (762)
Q Consensus 208 --------------------------------~~g-------~~d~~i~iwd~~~-~~~-~------~~~~~~~~~~v~~ 240 (762)
..+ -.++.+..|.++. +.. . .-...+|...|..
T Consensus 299 ~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRs 378 (888)
T KOG0306|consen 299 NEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRS 378 (888)
T ss_pred cccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeE
Confidence 011 2345555555544 111 0 1234568888999
Q ss_pred EEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccc
Q 040987 241 ITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 241 ~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 320 (762)
+++|.|...++++..+.+.+|+..+.++. +.. ..+.+.+..|-|.++++++|...|.+.+||+.+..
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kci-----RTi--~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~------ 445 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCI-----RTI--TCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS------ 445 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCccee-----EEe--ccccEEEEEecCCCceEEEeccCCceEEEEeehhh------
Confidence 99999988888888899999999888854 222 23478888899999999999999999999986553
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC-----ce--------
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG-----KK-------- 387 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~-----~~-------- 387 (762)
.+...+.|.+.|++++.+||++.+++|+.|.+|++||..-- ..
T Consensus 446 ------------------------l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~ 501 (888)
T KOG0306|consen 446 ------------------------LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKH 501 (888)
T ss_pred ------------------------hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeecc
Confidence 45677799999999999999999999999999999986421 11
Q ss_pred eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 388 KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.........|.|+.+||||++|+++--|++++||-+++.+..-.+.||. -+|.++.++||++.+++|+.|
T Consensus 502 ~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHk----------LPV~smDIS~DSklivTgSAD 571 (888)
T KOG0306|consen 502 TRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHK----------LPVLSMDISPDSKLIVTGSAD 571 (888)
T ss_pred ceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccc----------cceeEEeccCCcCeEEeccCC
Confidence 1234456789999999999999999999999999999999999999998 577999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..|++|-+.-|.+-..+.. |.+.|.++.|-|+...+.+++ .|+.|+-||-+.-..+..+
T Consensus 572 KnVKiWGLdFGDCHKS~fA----------HdDSvm~V~F~P~~~~FFt~g---------KD~kvKqWDg~kFe~iq~L-- 630 (888)
T KOG0306|consen 572 KNVKIWGLDFGDCHKSFFA----------HDDSVMSVQFLPKTHLFFTCG---------KDGKVKQWDGEKFEEIQKL-- 630 (888)
T ss_pred CceEEeccccchhhhhhhc----------ccCceeEEEEcccceeEEEec---------CcceEEeechhhhhhheee--
Confidence 9999999987765544432 378899999999999999998 9999999999988887776
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+| ...|.+++.+|+|.++++++.|.+|++|....
T Consensus 631 ---~~H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 631 ---DGH-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred ---ccc-hheeeeeEEcCCCCeEEeccCCceeEeeeccC
Confidence 688 88999999999999999999999999998765
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=366.97 Aligned_cols=523 Identities=43% Similarity=0.700 Sum_probs=418.7
Q ss_pred ecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
.|....+.....||+|++++....++.|.||...||.+++.|.+|..+++.+.+.|... . +.++++++.||+|++|
T Consensus 12 lgg~n~~~~~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~---~-~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSE---N-ANYLIVCSLDGTIRVW 87 (792)
T ss_pred eccccceecccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCc---c-ceEEEEEecCccEEEe
Confidence 56666666679999999999999999999999999999999999999999999999884 2 3488899999999999
Q ss_pred eCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc
Q 040987 149 DFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG 228 (762)
Q Consensus 149 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 228 (762)
|+..+.+++++..+.++..+.+..... +.. ..+++..++...... ..+...++++-+.+.+-....
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a-----~~s---~~~~~s~~~~~~~~~------~s~~~~~q~~~~~~~t~~~~~ 153 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQA-----DIS---ANVYVSVEDYSILTT------FSKKLSKQSSRFVLATFDSAK 153 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHh-----Ccc---ceeEeecccceeeee------cccccccceeeeEeeeccccc
Confidence 999999999999998888886631111 111 234444333322211 223333444444444433332
Q ss_pred eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
...........++.+++.|++.+...+..+.+|+..... ...........|...+++.++||+++++|+|..||.|.+|
T Consensus 154 ~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw 232 (792)
T KOG1963|consen 154 GDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVW 232 (792)
T ss_pred hhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEE
Confidence 222222223788999999999999889999999988755 2122334455688889999999999999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
.--+. .++....+.+++|...|.+++|+++|.+|++|+..+.+.+|.+++++.+
T Consensus 233 ~d~~~--------------------------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq 286 (792)
T KOG1963|consen 233 RDFGS--------------------------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ 286 (792)
T ss_pred ecccc--------------------------ccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc
Confidence 85331 1122345789999999999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+++.+++|..+.+|||+.+.+....|+.|.+....+......+.+...+.. ......+-.+.++++|..+.++..+..
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~ 366 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHP 366 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCC
Confidence 9999999999999999999999999999999999988888877777665421 123334667889999988889999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCC-CcceeEEEEEEecCCCeEEEEeeeccccCC-CceeEEEEEEecCCCceeEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGD-DVTVVVTLVALSQDGSLMSTVDIKLAEEGI-GSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~-~~d~~i~iwd~~~~~~~~~~ 545 (762)
|.|.+||+.+.+.+..+..+...+...+ .+...++.++.+-.|.++++.....+.... ++...+++|........+.+
T Consensus 367 g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L 446 (792)
T KOG1963|consen 367 GHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL 446 (792)
T ss_pred ceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE
Confidence 9999999999999999998888776666 567788999999999999999876554432 24678999999999999999
Q ss_pred EEEeecCCCCCceEEEEEcC-CCC-eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHP-NRR-AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~sp-d~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.+.+..+| ...+...++.+ ... .+++++.||.+++|-+.+.+..... ...|.|+....+|..++++++||.||.+|
T Consensus 447 ~T~I~~PH-~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~-~s~W~c~~i~sy~k~~i~a~~fs~dGsll 524 (792)
T KOG1963|consen 447 NTKINNPH-GNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKK-SSNWTCKAIGSYHKTPITALCFSQDGSLL 524 (792)
T ss_pred EEEEecCC-CceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcC-ccceEEeeeeccccCcccchhhcCCCcEE
Confidence 99999999 65555555544 333 7999999999999999766655444 67999999999999999999999999999
Q ss_pred EEEcCCeEEEEeCCC
Q 040987 624 AVAAETVITLWDPDR 638 (762)
Q Consensus 624 a~~~d~~i~iwd~~~ 638 (762)
+++.|++|.+||..+
T Consensus 525 a~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 525 AVSFDDTITIWDYDT 539 (792)
T ss_pred EEecCCEEEEecCCC
Confidence 999999999999988
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=347.43 Aligned_cols=556 Identities=12% Similarity=0.125 Sum_probs=391.9
Q ss_pred ceEEEEeeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecCCCEEEEEe-C--C
Q 040987 19 NKFIISKLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-S--N 94 (762)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~--~ 94 (762)
.+.+++++.+....-...+...+.+-++|.-. -..|.+||...-.+. .+..|...+++ +|||++|+|+|+|. + -
T Consensus 25 ~k~~L~kVlGlTv~~~~gLa~~p~Sgl~aYpA-GCvVVlfn~~~~tQ~hlvnssRk~~t~-vAfS~~GryvatGEcG~~p 102 (1080)
T KOG1408|consen 25 TKLILQKVLGLTVKNANGLASVPCSGLCAYPA-GCVVVLFNVDSCTQSHLVNSSRKPLTC-VAFSQNGRYVATGECGRTP 102 (1080)
T ss_pred hhhhhHhhhceEeecCCcccccccccceeecc-CcEEEEEcccccchhheecccCcceeE-EEEcCCCcEEEecccCCCc
Confidence 34455566565555555555555455555421 156688998865554 44778888997 99999999999998 3 6
Q ss_pred EEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec--CCeEEEEeCCCcceEEEEEeccceEEEeecc
Q 040987 95 TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL--DGTIKYWDFSVPELLKTIDVKFSIFSMVIPS 172 (762)
Q Consensus 95 ~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~--d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~ 172 (762)
.++||+++.-..+..|..|.-.|+|++|+|.+ +|+++.+. |-.|-+|||+..-....-+....|..++|
T Consensus 103 a~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~-------kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~f-- 173 (1080)
T KOG1408|consen 103 ASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGN-------KYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAF-- 173 (1080)
T ss_pred cceeeeeccccchhhhhhccccceeeeecCCC-------cEEEeeccccceEEEhhhhhhcccccccccceeEEEEEE--
Confidence 99999999999999999999999999999999 79988765 56788999986554444333445555555
Q ss_pred cccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc------------------------
Q 040987 173 LLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG------------------------ 228 (762)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~------------------------ 228 (762)
+.|+.. .....+..|++|.++.++...
T Consensus 174 ------sEdgSY-----------------------fvT~gnrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava 224 (1080)
T KOG1408|consen 174 ------SEDGSY-----------------------FVTSGNRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA 224 (1080)
T ss_pred ------ccCCce-----------------------eeeeeeeeEEEEEeeccccccCCccccchhhhccccccchhhhhh
Confidence 222211 011223345555554433110
Q ss_pred -----------------------------eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhhee-----
Q 040987 229 -----------------------------GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVM----- 273 (762)
Q Consensus 229 -----------------------------~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~----- 273 (762)
.....-+....|++. ..++|+ ++.+|.|++|+..+-.......
T Consensus 225 Cg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~hal 302 (1080)
T KOG1408|consen 225 CGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHAL 302 (1080)
T ss_pred hcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhcccccccccc
Confidence 000001122233443 356777 5589999999987544320000
Q ss_pred ----------eeeee----ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCccc
Q 040987 274 ----------RKITL----HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRD 339 (762)
Q Consensus 274 ----------~~~~~----~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (762)
..... +--....++.|++...+|.....|..++|||++......
T Consensus 303 g~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvg---------------------- 360 (1080)
T KOG1408|consen 303 GSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVG---------------------- 360 (1080)
T ss_pred ccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccccccc----------------------
Confidence 00000 111234577899988899999999999999997654321
Q ss_pred CCccccceeeeccccceeEEEEecC-----------CCEEEEEecCCeEEEEecCCCce--e------------------
Q 040987 340 NDDADLCTTWHWHPSEVSVLIFSSD-----------GAYLYSGGKEGVLVVWQLDTGKK--K------------------ 388 (762)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~~~~s~~-----------g~~l~s~~~dg~i~~wd~~~~~~--~------------------ 388 (762)
....+-.|...|+.+.--|- ...+++++.|++|++||++.+.. .
T Consensus 361 -----k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~ 435 (1080)
T KOG1408|consen 361 -----KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDS 435 (1080)
T ss_pred -----ceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccC
Confidence 12344557777776654331 12488999999999999976221 0
Q ss_pred ------------------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 389 ------------------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 389 ------------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
........+.+++.||+|++|++|..-|+++||++...+....+..|. ..|.
T Consensus 436 ~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHe----------sEil 505 (1080)
T KOG1408|consen 436 TQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHE----------SEIL 505 (1080)
T ss_pred chhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheeccc----------ceeE
Confidence 000112358899999999999999999999999999888888888777 8899
Q ss_pred eEEEeC---CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC--CeEEEEeeeccccCC
Q 040987 451 DIAFNH---DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG--SLMSTVDIKLAEEGI 525 (762)
Q Consensus 451 ~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--~~l~~~~~~~~~~~~ 525 (762)
++.|+. ..++||+++.|.-|.+||....-. +.. ..++|...|+++.|.-.| ..+++++
T Consensus 506 cLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~---l~q------tld~HSssITsvKFa~~gln~~MiscG-------- 568 (1080)
T KOG1408|consen 506 CLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD---LVQ------TLDGHSSSITSVKFACNGLNRKMISCG-------- 568 (1080)
T ss_pred EEeecCchhhhHhhhhccCCceEEEEecccccc---hhh------hhcccccceeEEEEeecCCceEEEecc--------
Confidence 999986 357899999999999999865422 111 123348889999998877 6777776
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
.|..|.+--.+.......+......-. ...+..++..|..+++++++.|..|+|||+.+++..+.++ ...
T Consensus 569 -ADksimFr~~qk~~~g~~f~r~t~t~~-ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FK--------gs~ 638 (1080)
T KOG1408|consen 569 -ADKSIMFRVNQKASSGRLFPRHTQTLS-KTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFK--------GSR 638 (1080)
T ss_pred -CchhhheehhccccCceeccccccccc-cceEEEeeeCCCcceEEEEecccceEEEeccccceeeeec--------ccc
Confidence 555554432221111111111000011 4578899999999999999999999999999999988874 223
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.|.+....+...|.|.|||+.. |.++.++|..+|++++.+.||...|+.+.|++|.+.|++++.||. |+||.+..
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgC--IFvW~lp~ 714 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGC--IFVWKLPL 714 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCce--EEEEECch
Confidence 5677888999999999999986 999999999999999999999999999999999999999999998 99999875
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-44 Score=330.42 Aligned_cols=282 Identities=22% Similarity=0.343 Sum_probs=258.7
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~ 146 (762)
.|.+.+|.. +.||+|++.||+|+ +|.++||+..+...+.+|.||...|.++.|+|. .. ..+|||+.||+++
T Consensus 172 ~gd~rPis~-~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~------~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 172 VGDTRPISG-CSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSD------LNLATASADGTVK 244 (459)
T ss_pred ccCCCccee-eEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCc------cceeeeccCCcee
Confidence 556778886 99999999999999 999999999999999999999999999999998 33 6899999999999
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
+|++++...+..++
T Consensus 245 lw~~~~e~~l~~l~------------------------------------------------------------------ 258 (459)
T KOG0272|consen 245 LWKLSQETPLQDLE------------------------------------------------------------------ 258 (459)
T ss_pred eeccCCCcchhhhh------------------------------------------------------------------
Confidence 99998766655444
Q ss_pred cceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
+|...|..++|+|+|++|+ ++.|.+-++||+.++... ....+|...|.+++|.|||..+++|+.|..-
T Consensus 259 ------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-----L~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~ 327 (459)
T KOG0272|consen 259 ------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-----LLQEGHSKGVFSIAFQPDGSLAATGGLDSLG 327 (459)
T ss_pred ------cchhhheeeeecCCCceeeecccccchhhcccccchhh-----HhhcccccccceeEecCCCceeeccCccchh
Confidence 4566788899999999999 558999999999999876 6678999999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+|||+++++ ++-.+.+|...|.++.|+|+|..|++|+.|++++|||++..
T Consensus 328 RvWDlRtgr------------------------------~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 328 RVWDLRTGR------------------------------CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred heeecccCc------------------------------EEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc
Confidence 999998885 45688999999999999999999999999999999999988
Q ss_pred cee-ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 386 KKK-FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 386 ~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
... ..+.|.+-|..+.|+| .|.+|++++.|++++||...+..+++.+.||. +.|.++.+++|+.++++
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe----------~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE----------GKVISLDISPDSQAIAT 447 (459)
T ss_pred ccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc----------cceEEEEeccCCceEEE
Confidence 775 4788999999999998 78899999999999999999999999999998 89999999999999999
Q ss_pred eecCceEEEEE
Q 040987 464 RAENYCIHFYS 474 (762)
Q Consensus 464 ~~~dg~i~i~d 474 (762)
++.|.++++|.
T Consensus 448 ~s~DRT~KLW~ 458 (459)
T KOG0272|consen 448 SSFDRTIKLWR 458 (459)
T ss_pred eccCceeeecc
Confidence 99999999995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=320.29 Aligned_cols=518 Identities=13% Similarity=0.152 Sum_probs=397.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc-eE----EeeecCCccceeEEEEeCCC
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG-LQ----ISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~-~~----~~~l~~h~~~V~~v~~s~~~ 126 (762)
..|.+|-..........+|...|.. .-+=|.+|.++. ++.+.||+..++ +. +..++...+.|+++ ++|+-
T Consensus 95 ~~i~~~~rgk~i~~~~~~~~a~v~~---l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital-~HP~T 170 (910)
T KOG1539|consen 95 NKIYAYARGKHIRHTTLLHGAKVHL---LLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITAL-LHPST 170 (910)
T ss_pred cEEEEEEccceEEEEeccccceEEE---EeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeE-ecchh
Confidence 5666676666677778888888876 566678888888 799999999874 22 12223323337777 57765
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
++. -++.|+.+|.+++|++++++.+++++... .|+++.- .+ .+-.+
T Consensus 171 -YLN----KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieq-----sP---------aLDVV-------------- 217 (910)
T KOG1539|consen 171 -YLN----KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQ-----SP---------ALDVV-------------- 217 (910)
T ss_pred -hee----eEEEeecCCcEEEEEeccCcEEEEecccccceeEecc-----CC---------cceEE--------------
Confidence 233 34489999999999999999999998876 6666621 00 01111
Q ss_pred CCCCCCccccEEEEecCCccccceeeecc-CCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeeeeeccCc
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAE-MKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
+.|..+|+|.++|++.++.+ ....| .+.|+.++|.-||+.+. ++ ..|.+.+||++..+.. ......|.+
T Consensus 218 --aiG~~~G~ViifNlK~dkil--~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~----~v~~nah~~ 289 (910)
T KOG1539|consen 218 --AIGLENGTVIIFNLKFDKIL--MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI----NVTRNAHYG 289 (910)
T ss_pred --EEeccCceEEEEEcccCcEE--EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee----eeeeccccC
Confidence 67899999999999999999 33334 69999999999999774 44 5699999999988743 344458889
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.|....|.|....+++++.|+.+++|=.+++.. .+..++.-.||..+..+++|.
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg--------------------------~pR~LR~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSGDG--------------------------VPRLLRSRGGHSAPPSCIRFY 343 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCCCC--------------------------cchheeeccCCCCCchheeee
Confidence 999999999999999999999999997654421 124456677899999999997
Q ss_pred -cCCCEEEEEecCCeEEEEecCCCce---------------eccC----CCCCCeEEEEeCCC-----CCeEEEEecCCc
Q 040987 363 -SDGAYLYSGGKEGVLVVWQLDTGKK---------------KFLP----RIGSPLLYFTESPD-----PSLSSISCADNQ 417 (762)
Q Consensus 363 -~~g~~l~s~~~dg~i~~wd~~~~~~---------------~~~~----~~~~~v~~~~~s~~-----~~~l~~~~~d~~ 417 (762)
.+|..+.+++.|++++.+++..... .... ..-.+|..+++... .+.+.+.-.+..
T Consensus 344 ~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~ 423 (910)
T KOG1539|consen 344 GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRS 423 (910)
T ss_pred ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcce
Confidence 6889999999999998887643211 0011 01135666666432 244555556778
Q ss_pred EEEEEcCCceE-EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 418 VHLLKMPSMEI-IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 418 i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+.|+.++... ...+..... ......+.+++.++.|++.+.|+..|.|-+|++++|-....+.. ...
T Consensus 424 ~~tW~~~n~~~G~~~L~~~~~-----~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~-------~~a 491 (910)
T KOG1539|consen 424 AYTWNFRNKTSGRHVLDPKRF-----KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGD-------SPA 491 (910)
T ss_pred EEEEeccCcccccEEecCccc-----cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeeccccc-------Ccc
Confidence 99999987544 223322110 00226789999999999999999999999999999866555531 122
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
|..+|+.++...-++.+++++ .+|.+++||.........+.. ...+.++..+.....++.+..|
T Consensus 492 h~~~V~gla~D~~n~~~vsa~---------~~Gilkfw~f~~k~l~~~l~l-------~~~~~~iv~hr~s~l~a~~~dd 555 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAG---------ADGILKFWDFKKKVLKKSLRL-------GSSITGIVYHRVSDLLAIALDD 555 (910)
T ss_pred ccCceeEEEecCCCceEEEcc---------CcceEEEEecCCcceeeeecc-------CCCcceeeeeehhhhhhhhcCc
Confidence 378899999999999999998 899999999998876555532 4478889999988999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEE
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNM 655 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~ 655 (762)
-.|+++|..+.+..+.+. +|...|++++|||||++|++++ |++|++||+.++.++-.+. -..+..++
T Consensus 556 f~I~vvD~~t~kvvR~f~-----------gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sl 623 (910)
T KOG1539|consen 556 FSIRVVDVVTRKVVREFW-----------GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSL 623 (910)
T ss_pred eeEEEEEchhhhhhHHhh-----------ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceee
Confidence 999999999988887763 7999999999999999999999 9999999999999998875 56789999
Q ss_pred EEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 656 SFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 656 ~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.|||+|.+||++..|.. -|++|-=.+
T Consensus 624 s~SPngD~LAT~Hvd~~-gIylWsNks 649 (910)
T KOG1539|consen 624 SFSPNGDFLATVHVDQN-GIYLWSNKS 649 (910)
T ss_pred EECCCCCEEEEEEecCc-eEEEEEchh
Confidence 99999999999999853 399996443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=320.87 Aligned_cols=282 Identities=18% Similarity=0.249 Sum_probs=259.6
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
-+.+.+|..+.|+.|++.|++|+.+|.+++|+..+... ..+.+|...+.++.|+|. +..+++++.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 34677899999999999999999999999999998866 468899999999999997 678999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.++..+.+|. ..|..++|+|+|++|++++.|.+-++||+.++..+.. .++| ...|.+++|
T Consensus 252 ~~l~~l~gH~----------~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~----QEGH------s~~v~~iaf 311 (459)
T KOG0272|consen 252 TPLQDLEGHL----------ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL----QEGH------SKGVFSIAF 311 (459)
T ss_pred cchhhhhcch----------hhheeeeecCCCceeeecccccchhhcccccchhhHh----hccc------ccccceeEe
Confidence 9999999988 7889999999999999999999999999999865543 2333 788999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|||.++++|+ .|..-+|||+++++++..+ .+| ...|.+|+|+|+|..||+|+.|++++|||++.
T Consensus 312 ~~DGSL~~tGG---------lD~~~RvWDlRtgr~im~L-----~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~ 376 (459)
T KOG0272|consen 312 QPDGSLAATGG---------LDSLGRVWDLRTGRCIMFL-----AGH-IKEILSVAFSPNGYHLATGSSDNTCKVWDLRM 376 (459)
T ss_pred cCCCceeeccC---------ccchhheeecccCcEEEEe-----ccc-ccceeeEeECCCceEEeecCCCCcEEEeeecc
Confidence 99999999999 8899999999999988776 689 99999999999999999999999999999998
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
......+ .+|..-|+.+.|+| .|.+|++++ |++++||...+..+++++.||.+.|.++..++|+.++
T Consensus 377 r~~ly~i-----------pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 377 RSELYTI-----------PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAI 445 (459)
T ss_pred cccceec-----------ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceE
Confidence 7776655 48999999999999 788999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEE
Q 040987 665 VATSWGSKPQLSVWN 679 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd 679 (762)
++++.|.+ +++|.
T Consensus 446 ~t~s~DRT--~KLW~ 458 (459)
T KOG0272|consen 446 ATSSFDRT--IKLWR 458 (459)
T ss_pred EEeccCce--eeecc
Confidence 99999998 99995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=290.10 Aligned_cols=292 Identities=12% Similarity=0.176 Sum_probs=263.4
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
.+++++||.+.|.+ +.|++|.++|++++ ||.+.|||.-|....+-+.-....|..++|+|.| .++|.|+-|
T Consensus 47 ~rr~LkGH~~Ki~~-~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-------~~VAcGGLd 118 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYA-MDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-------NFVACGGLD 118 (343)
T ss_pred eEEEecccccceee-eEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-------CeEEecCcC
Confidence 44789999999997 99999999999999 8999999999998888888889999999999999 799999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
+...||++.+.+.... +
T Consensus 119 N~Csiy~ls~~d~~g~---------------------------------------------------------~------ 135 (343)
T KOG0286|consen 119 NKCSIYPLSTRDAEGN---------------------------------------------------------V------ 135 (343)
T ss_pred ceeEEEeccccccccc---------------------------------------------------------c------
Confidence 9999999885421100 0
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeec
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDV 301 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~ 301 (762)
.+...+.+|.+.+.|..|.+|+++|.++.|.+..+||+++++.. ..+.+|.+.|.+++++| +++.+++|+-
T Consensus 136 ---~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~-----~~f~GH~gDV~slsl~p~~~ntFvSg~c 207 (343)
T KOG0286|consen 136 ---RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQT-----QVFHGHTGDVMSLSLSPSDGNTFVSGGC 207 (343)
T ss_pred ---eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEE-----EEecCCcccEEEEecCCCCCCeEEeccc
Confidence 00145678999999999999999998999999999999999876 77889999999999999 9999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
|+..++||++.+ .+++.|.+|...|++++|.|+|.-+++|++|++.++||
T Consensus 208 D~~aklWD~R~~------------------------------~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 208 DKSAKLWDVRSG------------------------------QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD 257 (343)
T ss_pred ccceeeeeccCc------------------------------ceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence 999999999776 45689999999999999999999999999999999999
Q ss_pred cCCCceeccCCCC---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKKFLPRIG---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
++..+.+....+. .+|++++||..|++|++|..|.++.+||.-.++....+.+|. +.|.++..+|||
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHe----------NRvScl~~s~DG 327 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHE----------NRVSCLGVSPDG 327 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccC----------CeeEEEEECCCC
Confidence 9998886554443 489999999999999999999999999999999999999988 899999999999
Q ss_pred CEEEEeecCceEEEEE
Q 040987 459 GLVALRAENYCIHFYS 474 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d 474 (762)
.-+++|+.|.+++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 9999999999999994
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=288.23 Aligned_cols=287 Identities=19% Similarity=0.282 Sum_probs=257.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+++++|...|.++.|++|.++|++++.||.+.+||.-+...... +-....|..++|+|.|+++++|+.|+...||++.
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls 127 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS 127 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence 478999999999999999999999999999999999988776554 4445689999999999999999999999999998
Q ss_pred Cc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 425 SM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 425 ~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+. ...+.+.+|. +.+.++.|.+|+ .|++++.|.+..+||+++++.+..+. +| .
T Consensus 128 ~~d~~g~~~v~r~l~gHt----------gylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~----GH------~ 186 (343)
T KOG0286|consen 128 TRDAEGNVRVSRELAGHT----------GYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFH----GH------T 186 (343)
T ss_pred cccccccceeeeeecCcc----------ceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEec----CC------c
Confidence 64 4556678877 899999999864 68999999999999999998776654 33 7
Q ss_pred eeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 499 VVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 499 ~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
+.|.++.++| +++.+++++ -|...++||++.+...+.+ .+| ...|+++.|.|+|.-+++|++|+
T Consensus 187 gDV~slsl~p~~~ntFvSg~---------cD~~aklWD~R~~~c~qtF-----~gh-esDINsv~ffP~G~afatGSDD~ 251 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGG---------CDKSAKLWDVRSGQCVQTF-----EGH-ESDINSVRFFPSGDAFATGSDDA 251 (343)
T ss_pred ccEEEEecCCCCCCeEEecc---------cccceeeeeccCcceeEee-----ccc-ccccceEEEccCCCeeeecCCCc
Confidence 8899999999 999999999 8899999999999887766 789 99999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
+.++||++....+..+. ......+|++++||..|++|.+|. |.++.+||.-.++.+..|.+|.++|.++.
T Consensus 252 tcRlyDlRaD~~~a~ys---------~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~ 322 (343)
T KOG0286|consen 252 TCRLYDLRADQELAVYS---------HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLG 322 (343)
T ss_pred eeEEEeecCCcEEeeec---------cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEE
Confidence 99999999988776663 122357899999999999999987 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEE
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+|||.-|+++|.|.. ++||.
T Consensus 323 ~s~DG~av~TgSWDs~--lriW~ 343 (343)
T KOG0286|consen 323 VSPDGMAVATGSWDST--LRIWA 343 (343)
T ss_pred ECCCCcEEEecchhHh--eeecC
Confidence 9999999999999998 99994
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=292.84 Aligned_cols=517 Identities=14% Similarity=0.160 Sum_probs=396.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CC--------EEEEEEcccceEEeeecCCccceeEEEEe
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SN--------TVSIFSTSTGLQISSLEGHKAPVTTVIVV 123 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~--------~i~iwd~~~~~~~~~l~~h~~~V~~v~~s 123 (762)
+...+++.++..++...||...|.| ++.+||.-++|+|. .| .++|||..+-..++.+......|+|++||
T Consensus 85 ~V~Vl~n~ee~~Qr~y~GH~ddikc-~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFs 163 (626)
T KOG2106|consen 85 AVGVLYNWEERSQRHYLGHNDDIKC-MAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFS 163 (626)
T ss_pred cEEEEEeehhhhcccccCCCCceEE-EeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeec
Confidence 5667899999888899999999998 99999999999887 34 69999998888889888888899999999
Q ss_pred CCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 124 ~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
+-.. +.++ ..+--+.+..+.|||+..+......+... .+....| .| .+.+ .
T Consensus 164 k~~~--G~~l-~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~F-----HP---td~n------------l----- 215 (626)
T KOG2106|consen 164 KING--GSLL-CAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATF-----HP---TDPN------------L----- 215 (626)
T ss_pred ccCC--CceE-EEecCCCccccchhhchhhhccCcceeccceEEEEEe-----cc---CCCc------------E-----
Confidence 8542 1222 23334667789999999988777666555 3334433 11 1111 1
Q ss_pred CccCCCCCCccccEEEEecCCcccccee---eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGV---TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH 279 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~ 279 (762)
+..+..+.+.+|+++.+...+.. .....+.|.|++|.++|..+.+.++|.|.||+..+... .++.. .
T Consensus 216 -----iit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~----~k~~~-a 285 (626)
T KOG2106|consen 216 -----IITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGTNRI----SKQVH-A 285 (626)
T ss_pred -----EEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCCceE----EeEee-e
Confidence 23457789999999988777322 12244689999999999999999999999999977653 33344 9
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
|.+.|.+++...+|.+ ++|+.|..|..||- .-+... ...+....+.|..+
T Consensus 286 H~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd~-~y~k~r----------------------------~~elPe~~G~iRtv 335 (626)
T KOG2106|consen 286 HDGGVFSLCMLRDGTL-LSGGKDRKIILWDD-NYRKLR----------------------------ETELPEQFGPIRTV 335 (626)
T ss_pred cCCceEEEEEecCccE-eecCccceEEeccc-cccccc----------------------------cccCchhcCCeeEE
Confidence 9999999999999975 45999999999993 221111 12233344566666
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+=.. .-|+.|...+.|..=.++++-......|......++.+|+..++++++.|+.+++|+ ..++..+..-.
T Consensus 336 ~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---- 407 (626)
T KOG2106|consen 336 AEGK--GDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---- 407 (626)
T ss_pred ecCC--CcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec----
Confidence 5332 227777777778777888888788888999999999999999999999999999999 33444332211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
.++.++.|+|.| .+|.|+..|...+.|.++...+..- .. ..++.+++|+|+|.+||.++
T Consensus 408 -------d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~-~d----------~~~ls~v~ysp~G~~lAvgs-- 466 (626)
T KOG2106|consen 408 -------DPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH-TD----------NEQLSVVRYSPDGAFLAVGS-- 466 (626)
T ss_pred -------CceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE-ec----------CCceEEEEEcCCCCEEEEec--
Confidence 577899999999 9999999999999999985444332 22 46799999999999999999
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+.|++|.+......+.... .-+ ...|+.+.||+|++++.+-+-|-.|..|.....+.....++..|.
T Consensus 467 -------~d~~iyiy~Vs~~g~~y~r~~---k~~-gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~ 535 (626)
T KOG2106|consen 467 -------HDNHIYIYRVSANGRKYSRVG---KCS-GSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWA 535 (626)
T ss_pred -------CCCeEEEEEECCCCcEEEEee---eec-CceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeee
Confidence 899999999988776555432 234 579999999999999999999999999965555555444444554
Q ss_pred eee-------ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC---eEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 600 CHA-------VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN---VLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 600 ~~~-------~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~---~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
... .+..+...|..++-+.+.+++|+|. .|.|++|...-- .....+.+|.+.|.+++|.-+...|++.+
T Consensus 536 t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg 615 (626)
T KOG2106|consen 536 TYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTG 615 (626)
T ss_pred eeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecC
Confidence 321 2345667788888889999999998 799999986533 23446678999999999999999999988
Q ss_pred cCCCCeEEEEEC
Q 040987 669 WGSKPQLSVWNM 680 (762)
Q Consensus 669 ~d~~~~v~vwd~ 680 (762)
.|.. |..|++
T Consensus 616 ~D~S--i~qW~l 625 (626)
T KOG2106|consen 616 KDTS--IMQWRL 625 (626)
T ss_pred CCce--EEEEEe
Confidence 9988 999986
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=312.26 Aligned_cols=527 Identities=16% Similarity=0.199 Sum_probs=367.5
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++.+...+.| +..+|+|....|.+||..+...+.++.||.++|+|+.|.|+. .+..+++||+.|++|++|.++..
T Consensus 15 R~~~v~sw~~-~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s----~~~a~~vsG~sD~~v~lW~l~~~ 89 (764)
T KOG1063|consen 15 RVPKVSSWGP-GGLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTS----EIVAEMVSGDSDGRVILWKLRDE 89 (764)
T ss_pred cccccccccc-cceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccc----cccceEEEccCCCcEEEEEEeeh
Confidence 4554466755 448899999999999999888889999999999999999998 34458999999999999999854
Q ss_pred c--eEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc--ccc
Q 040987 154 E--LLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR--LAG 228 (762)
Q Consensus 154 ~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~--~~~ 228 (762)
. ++.++.+|. ++.++. +..... .+.+.|+.+.+||.+..+ +..
T Consensus 90 ~~~~i~~~~g~~~~~~cv~-------------------a~~~~~-------------~~~~ad~~v~vw~~~~~e~~~~~ 137 (764)
T KOG1063|consen 90 YLIKIYTIQGHCKECVCVV-------------------ARSSVM-------------TCKAADGTVSVWDKQQDEVFLLA 137 (764)
T ss_pred heEEEEeecCcceeEEEEE-------------------eeeeEE-------------EeeccCceEEEeecCCCceeeeh
Confidence 4 344555543 444431 111100 112589999999995555 221
Q ss_pred eeeecc-CCCceEEEECCCC-CEEE-EE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc---EEEEeec
Q 040987 229 GVTLAE-MKEPQVITISSSG-KYFG-IR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR---IVAAGDV 301 (762)
Q Consensus 229 ~~~~~~-~~~v~~~~~spdg-~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~l~~~~~ 301 (762)
...... .--..|+++.|+. .+|. .+ .+..|.++.-...++ .....+.+|.+.|.+++|...+. +||+++.
T Consensus 138 ~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f---~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQ 214 (764)
T KOG1063|consen 138 VLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSF---ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQ 214 (764)
T ss_pred heehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcce---eEEEEeeccchhhhhhhhhccCCCcEEEEecCC
Confidence 111111 1234677777844 4443 33 566677776654443 44467789999999999987544 8999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCcc----ccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDA----DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
|..|+||.+.-+...............+. .+.......- ..-..+.||.+.|+++.|+|.+..|++++.|.++
T Consensus 215 D~yIRiW~i~~~~~~~~~~~e~~~t~~~~---~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksm 291 (764)
T KOG1063|consen 215 DRYIRIWRIVLGDDEDSNEREDSLTTLSN---LPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSM 291 (764)
T ss_pred ceEEEEEEEEecCCccccccccccccccC---CceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcce
Confidence 99999999754431110000000000000 0000000000 0113456999999999999999999999999999
Q ss_pred EEEecCCCc--e---eccCCC---CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCccc
Q 040987 378 VVWQLDTGK--K---KFLPRI---GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 378 ~~wd~~~~~--~---~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~ 446 (762)
.+|..++.. . ..+-.. ........|+|+++.+++-+..|..++|..... .....+.||.
T Consensus 292 iiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~---------- 361 (764)
T KOG1063|consen 292 IIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHV---------- 361 (764)
T ss_pred EEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccc----------
Confidence 999876552 2 122222 235788999999999999999999999984332 2333456666
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
+.|.+++|+|.|++|++.+.|.+-|+|-.-..+.. .++. -++. |...++|++|-+....++++.
T Consensus 362 ~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia-RPQi------HGyDl~c~~~vn~~~~FVSgA-------- 426 (764)
T KOG1063|consen 362 DGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-RPQI------HGYDLTCLSFVNEDLQFVSGA-------- 426 (764)
T ss_pred ccceeeeecCCCCEEEEeccccceeeecccccccceeeec-cccc------ccccceeeehccCCceeeecc--------
Confidence 88999999999999999999999999876522221 1111 1122 267789999988655666665
Q ss_pred CceeEEEEEEecCC--------------------------------Ccee------------EEE---------------
Q 040987 526 GSLVCLKFWVSGTQ--------------------------------NKEF------------TLS--------------- 546 (762)
Q Consensus 526 ~~d~~i~iwd~~~~--------------------------------~~~~------------~~~--------------- 546 (762)
++..+|+|+.... +... ..+
T Consensus 427 -dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~ 505 (764)
T KOG1063|consen 427 -DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT 505 (764)
T ss_pred -cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence 5566667654310 0000 000
Q ss_pred ------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCC-----cEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 547 ------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-----DFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 547 ------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
...+.|| ...|.+++.+|+++++|+++... .|++|+..+......+ .+|.-
T Consensus 506 EdqLq~~tLwPEv~KLYGH-GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L-----------~~HsL 573 (764)
T KOG1063|consen 506 EDQLQQNTLWPEVHKLYGH-GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQEL-----------EGHSL 573 (764)
T ss_pred HHHHHHhccchhhHHhccC-ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhhee-----------cccce
Confidence 0012588 88999999999999999987543 5999999877666544 47999
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe----EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRNV----LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|+.++|||||++|++.+ |.++.+|...... ....++.|+.-|++..|+||+++++|+|.|.+ |++|.....
T Consensus 574 TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~--VkVW~~~~~ 650 (764)
T KOG1063|consen 574 TVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKK--VKVWEEPDL 650 (764)
T ss_pred EEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCce--EEEEeccCc
Confidence 999999999999999999 9999999886542 23346789999999999999999999999999 999999887
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=278.25 Aligned_cols=297 Identities=18% Similarity=0.232 Sum_probs=251.9
Q ss_pred CCcceeEEEEecCCCeEEEEecCCcceeeeecCc-ccccCCceeecCCCEEEEEeCCEEEEEEcccce--EEeeecCCcc
Q 040987 39 PRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGR-SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL--QISSLEGHKA 115 (762)
Q Consensus 39 ~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~-~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~--~~~~l~~h~~ 115 (762)
+.+.+.+||+++-|.+||+|...++.-.....|. ..|.. +.+.||+++||+++.-.|++||+.+++ ++.++.+|..
T Consensus 6 ~~d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNr-LeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k 84 (311)
T KOG0315|consen 6 PTDDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNR-LEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK 84 (311)
T ss_pred CCCCceEEEeccCcceeeeeehhcCeEEEEEecCccceee-EEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCC
Confidence 4446889999999999999999998887766665 55775 999999999999999999999999875 6899999999
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|+++.|..+| ++++|||+||++||||++...+.+.++...+|.++... .+..
T Consensus 85 NVtaVgF~~dg-------rWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlh----------pnQt---------- 137 (311)
T KOG0315|consen 85 NVTAVGFQCDG-------RWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLH----------PNQT---------- 137 (311)
T ss_pred ceEEEEEeecC-------eEEEecCCCceEEEEeccCcccchhccCCCCcceEEec----------CCcc----------
Confidence 99999999999 89999999999999999998888888888888888541 1100
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh-hhee
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE-RVVM 273 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~-~~~~ 273 (762)
.+++|..+|.|++||+.+..+.+.........+.++...|||.+|++. ..|..++|++.+.... ...+
T Consensus 138 ----------eLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P 207 (311)
T KOG0315|consen 138 ----------ELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEP 207 (311)
T ss_pred ----------eEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceE
Confidence 016788999999999999988877777778899999999999999866 6899999999875432 1233
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+..|.+.+..+.+|||+++||+++.|.+++||+.++. + +....+.+|.
T Consensus 208 ~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~---------------------------kle~~l~gh~ 258 (311)
T KOG0315|consen 208 VHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--F---------------------------KLELVLTGHQ 258 (311)
T ss_pred hhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--e---------------------------eeEEEeecCC
Confidence 3456789999999999999999999999999999998765 2 2336889999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEe
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTE 402 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~ 402 (762)
..++.++||.||++|++++.|+.+++|++..++.+ ...+|.....|++.
T Consensus 259 rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 259 RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 99999999999999999999999999999999875 45556555556554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=276.22 Aligned_cols=286 Identities=18% Similarity=0.244 Sum_probs=249.7
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEEEccCCCCCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRSISGIKLPCPLP 442 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~ 442 (762)
-+|++++.|.+|++|...+|.+.....| ++.|..+.+.||++.|+++ ....|++||++++. ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa-~~qhvRlyD~~S~np~Pv~t~e~h~------ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAA-GNQHVRLYDLNSNNPNPVATFEGHT------ 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhc-cCCeeEEEEccCCCCCceeEEeccC------
Confidence 4789999999999999999999765544 5689999999999999988 45689999999854 688898887
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
+.|.++.|..||+++++|++||+++|||++.....+.+.. ..+|+++..+|+...|++++
T Consensus 84 ----kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----------~spVn~vvlhpnQteLis~d----- 143 (311)
T KOG0315|consen 84 ----KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----------NSPVNTVVLHPNQTELISGD----- 143 (311)
T ss_pred ----CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----------CCCcceEEecCCcceEEeec-----
Confidence 7899999999999999999999999999998544443332 67799999999999999998
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.+|.|++||+........+. ... ...|.+++..|||.+++.+...|..++|++-+......+ .+..
T Consensus 144 ----qsg~irvWDl~~~~c~~~li----Pe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l-----~P~~ 209 (311)
T KOG0315|consen 144 ----QSGNIRVWDLGENSCTHELI----PED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL-----EPVH 209 (311)
T ss_pred ----CCCcEEEEEccCCccccccC----CCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccc-----eEhh
Confidence 88999999999887665553 222 678999999999999999999999999999885554444 2555
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.++.|.+.+..+.+|||+++||+++ |.+++||+.++. +.-..+++|...+++.+||.||+||++++.|+. +++|++
T Consensus 210 k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~--~rlW~~ 287 (311)
T KOG0315|consen 210 KFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHT--ARLWDL 287 (311)
T ss_pred heecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCc--eeeccc
Confidence 5778999999999999999999998 999999999988 777788999999999999999999999999998 999999
Q ss_pred CCCceeeEEEEeec
Q 040987 681 SKLSISWSYLLHVE 694 (762)
Q Consensus 681 ~~~~~~~~~~~~~~ 694 (762)
.+++.+..+.+|..
T Consensus 288 ~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 288 SAGKEVRQYQGHHK 301 (311)
T ss_pred ccCceeeecCCccc
Confidence 99999999998875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=300.41 Aligned_cols=469 Identities=14% Similarity=0.175 Sum_probs=355.4
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+..|..+|.+ +.|.|..-++.++- +|.|.|||.+|...++.++-..-+|.+..|-+.. .++++|+.|..|
T Consensus 8 k~~~rSdRVKs-Vd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-------nWiv~GsDD~~I 79 (794)
T KOG0276|consen 8 KFQSRSDRVKS-VDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-------NWIVTGSDDMQI 79 (794)
T ss_pred HhhccCCceee-eecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-------ceEEEecCCceE
Confidence 34558999998 99999999998888 8999999999999999999999999999999998 799999999999
Q ss_pred EEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 146 KYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
+|++..+++.++.|+.|. -+.+++..+ ..|. + .+++.|-.|++||.+.+
T Consensus 80 rVfnynt~ekV~~FeAH~DyIR~iavHP----------t~P~----v----------------LtsSDDm~iKlW~we~~ 129 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEAHSDYIRSIAVHP----------TLPY----V----------------LTSSDDMTIKLWDWENE 129 (794)
T ss_pred EEEecccceeeEEeeccccceeeeeecC----------CCCe----E----------------EecCCccEEEEeeccCc
Confidence 999999999999999998 666665411 1110 0 67889999999999999
Q ss_pred cccceeeeccCCCceEEEECCC-CCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC--CcEEEEee
Q 040987 225 RLAGGVTLAEMKEPQVITISSS-GKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT--QRIVAAGD 300 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spd-g~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--~~~l~~~~ 300 (762)
-...+...+|...|.+++|.|. .+.+| ++-|++|+||.+....+. ..+.+|..+|+|+.|-+- ..+|++|+
T Consensus 130 wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n-----fTl~gHekGVN~Vdyy~~gdkpylIsga 204 (794)
T KOG0276|consen 130 WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN-----FTLEGHEKGVNCVDYYTGGDKPYLISGA 204 (794)
T ss_pred eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc-----eeeeccccCcceEEeccCCCcceEEecC
Confidence 8887999999999999999994 56677 457999999999988765 677799999999999884 46999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.|.+|+|||..+. .+++++.||...|..+.|+|.-..+++|+.||++++|
T Consensus 205 DD~tiKvWDyQtk------------------------------~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 205 DDLTIKVWDYQTK------------------------------SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred CCceEEEeecchH------------------------------HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 9999999999776 5778999999999999999999999999999999999
Q ss_pred ecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 381 QLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 381 d~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
+..+-+... +.-..+++.|++-.+.+..+++|..+|.+.+ .+...++. +..++.|+
T Consensus 255 hs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~----------------------vsMd~~gK 311 (794)
T KOG0276|consen 255 NSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPA----------------------VSMDSNGK 311 (794)
T ss_pred cCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCCc----------------------eeecCCcc
Confidence 998877654 3444568999999998889999877766544 33323222 33334443
Q ss_pred EEEEeecC-ceEEEE------EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 460 LVALRAEN-YCIHFY------SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 460 ~l~~~~~d-g~i~i~------d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
.+-+...+ ..+.+- ++..++.+..-...... ..-....++-+|+|++++++ +||.-.
T Consensus 312 Iiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs------~eiyPq~L~hsPNGrfV~Vc----------gdGEyi 375 (794)
T KOG0276|consen 312 IIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGS------VEIYPQTLAHSPNGRFVVVC----------GDGEYI 375 (794)
T ss_pred EEEEcCceeeeeeceeccCcccccCCccccchhhhccc------cccchHHhccCCCCcEEEEe----------cCccEE
Confidence 33322211 011111 22333222111111110 02234567889999999998 678888
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
||..-..+.. . .+.-....|++|.+..+.-..++.|+++ ++.+....+. ...+
T Consensus 376 IyTala~RnK----------~-fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~-------------~~~~- 428 (794)
T KOG0276|consen 376 IYTALALRNK----------A-FGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR-------------PDMS- 428 (794)
T ss_pred EEEeeehhhc----------c-cccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc-------------cccc-
Confidence 8874332211 1 4456678999998888888888899998 5555544431 1111
Q ss_pred EEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 613 AAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 613 ~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
...--.|.+|.+.+++.+++||.+++++++.+... ...+.|+.+|.+++.++.|. .++....
T Consensus 429 -~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~---~k~v~w~d~g~lVai~~d~S---fyil~~n 490 (794)
T KOG0276|consen 429 -AEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEVT---SKHVYWSDNGELVAIAGDDS---FYILKFN 490 (794)
T ss_pred -eeeecCCceEEEEeCCeEEEEEcccceEEEEEeec---cceeEEecCCCEEEEEecCc---eeEEEec
Confidence 22223566788888999999999999999998644 35688999999999999887 5555443
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=304.79 Aligned_cols=534 Identities=11% Similarity=0.130 Sum_probs=402.8
Q ss_pred EEeccccccccccceEEEEeeeeeEEEEEEeecCCcc-----eeEEEEecCCCeEEEEecCCc-----ceeeeecCccc-
Q 040987 6 VVPFRASSHQSIQNKFIISKLKAIKIHILIERKPRSR-----SFIFAVARSSGLCRTAEYPAV-----NSKMIRGGRSY- 74 (762)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~~~g~i~~~~~~~~-----~~~~~~~h~~~- 74 (762)
++..+-+.--..+++++.-.......+....+..... +..+.++..++.+.+|+..+. .+.++...++.
T Consensus 82 las~~~~vy~A~g~~i~~~~rgk~i~~~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~ 161 (910)
T KOG1539|consen 82 LASDKDYVYVASGNKIYAYARGKHIRHTTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDF 161 (910)
T ss_pred EEecCceEEEecCcEEEEEEccceEEEEeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccCCc
Confidence 4445555555666777766666555555555553321 334555667899999998873 12233333333
Q ss_pred ccCCceeecCC--CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC
Q 040987 75 VSSPPAFSNDV--KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 75 v~~~~~~s~dg--~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~ 151 (762)
|+ --+.|+- +.++.|+ +|.+.||++.+++.+++++++...|+++.=+|-- ..+|.|..+|+|.+++++
T Consensus 162 It--al~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL-------DVVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 162 IT--ALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL-------DVVAIGLENGTVIIFNLK 232 (910)
T ss_pred ee--eEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc-------eEEEEeccCceEEEEEcc
Confidence 44 3345542 4566766 7999999999999999999999999999999987 689999999999999999
Q ss_pred CcceEEEEEec-cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 152 VPELLKTIDVK-FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 152 ~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.++.+.+|+.. .+|.++.| ..|+.... ++|+..|.+.+||++..+.....
T Consensus 233 ~dkil~sFk~d~g~VtslSF--------rtDG~p~l---------------------as~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 233 FDKILMSFKQDWGRVTSLSF--------RTDGNPLL---------------------ASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred cCcEEEEEEccccceeEEEe--------ccCCCeeE---------------------EeccCCceEEEEEcCCCeeeeee
Confidence 99999999986 69999988 44555421 77889999999999999999777
Q ss_pred eeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc-CCCcEEEEeecCCeEEEE
Q 040987 231 TLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH-PTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vw 308 (762)
...|.+.|....|.|....+. ++.|+.+++|-.+++... .+..+...+|..+..|++|. .+|.++.+++.|++++.+
T Consensus 284 ~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~-pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~f 362 (910)
T KOG1539|consen 284 RNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGV-PRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSF 362 (910)
T ss_pred eccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCc-chheeeccCCCCCchheeeeccCcEEEEecccCcchhhh
Confidence 778999999999999999988 457888887765544432 14446777999999999998 688999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccce---eeeccccceeEEEEecC-----CCEEEEEecCCeEEEE
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT---TWHWHPSEVSVLIFSSD-----GAYLYSGGKEGVLVVW 380 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~s~~-----g~~l~s~~~dg~i~~w 380 (762)
++.....-+.... .......+... ...-.-.+|..+++... .+.++..-.+...+.|
T Consensus 363 s~~~e~~~~~l~~---------------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW 427 (910)
T KOG1539|consen 363 SVISESQSQELGQ---------------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTW 427 (910)
T ss_pred hhhHHHHhHhhcc---------------cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEE
Confidence 8743321110000 00000000000 11112234555555321 2344444456789999
Q ss_pred ecCCCce-ec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 381 QLDTGKK-KF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 381 d~~~~~~-~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
+..+... .. +......+++++.++.|++.+.|...|.|.+|++++|-....+... ..|++.|.+++
T Consensus 428 ~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~-------~ah~~~V~gla 500 (910)
T KOG1539|consen 428 NFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDS-------PAHKGEVTGLA 500 (910)
T ss_pred eccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccC-------ccccCceeEEE
Confidence 9887654 22 2224468999999999999999999999999999999888877411 12448999999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
...-++.+++++.+|.+.+||.........+.. ...+.++..+.....+|.+. +|-.|++
T Consensus 501 ~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-----------~~~~~~iv~hr~s~l~a~~~---------ddf~I~v 560 (910)
T KOG1539|consen 501 VDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL-----------GSSITGIVYHRVSDLLAIAL---------DDFSIRV 560 (910)
T ss_pred ecCCCceEEEccCcceEEEEecCCcceeeeecc-----------CCCcceeeeeehhhhhhhhc---------CceeEEE
Confidence 999999999999999999999988765555443 55688888998888999888 8899999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
+|..+.+..+.+ .+| .+.|++++|||||++|++++.|++|++||+.++.++-.+ .-..+.++
T Consensus 561 vD~~t~kvvR~f-----~gh-~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~------------~vd~~~~s 622 (910)
T KOG1539|consen 561 VDVVTRKVVREF-----WGH-GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGL------------LVDSPCTS 622 (910)
T ss_pred EEchhhhhhHHh-----hcc-ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeE------------ecCCccee
Confidence 999999887776 689 999999999999999999999999999999999887665 24678899
Q ss_pred EEEcCCCcEEEEEc-C-CeEEEEeCCC
Q 040987 614 AAFSADGSVLAVAA-E-TVITLWDPDR 638 (762)
Q Consensus 614 ~~~s~dg~~la~~~-d-~~i~iwd~~~ 638 (762)
+.|||+|.+||+.. | ..|++|.=.+
T Consensus 623 ls~SPngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred eEECCCCCEEEEEEecCceEEEEEchh
Confidence 99999999999998 6 7899996544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=306.25 Aligned_cols=546 Identities=15% Similarity=0.130 Sum_probs=371.5
Q ss_pred ceeEEEEec--CCCeEEEEecCC-cceeeeecCcccccCCceeecCCCEEEEEe---CCEEEEEEcccceEEeeecCCcc
Q 040987 42 RSFIFAVAR--SSGLCRTAEYPA-VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHKA 115 (762)
Q Consensus 42 ~~~~~a~~~--~~g~i~~~~~~~-~~~~~~~~h~~~v~~~~~~s~dg~~la~~~---~~~i~iwd~~~~~~~~~l~~h~~ 115 (762)
.+.|+|+|- ....+++|+++. +....+..|+-.|+| ++|||.++|+++.+ |-.|.+||....-.... +.-..
T Consensus 89 ~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtc-vaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~as-nkiss 166 (1080)
T KOG1408|consen 89 NGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTC-VAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGAS-NKISS 166 (1080)
T ss_pred CCcEEEecccCCCccceeeeeccccchhhhhhcccccee-eeecCCCcEEEeeccccceEEEhhhhhhcccccc-cccce
Confidence 377999987 677899999997 445567999999998 99999999999887 46889998754432221 22457
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE-E--Eeccc-eEEEeecccccCCcccCC-CCCceEEE
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT-I--DVKFS-IFSMVIPSLLRQPAQSDE-KPPKLFAY 190 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~-~--~~~~~-v~~~~~~~~~~~~~~~~~-~~~~~~~~ 190 (762)
.|.+++|+.|| .|++|++ ...|++|.+..++..+. + .+... .-.+.++.++... ...+ .-...+|.
T Consensus 167 ~Vsav~fsEdg-------SYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~ava-Cg~gicAestfai 237 (1080)
T KOG1408|consen 167 VVSAVAFSEDG-------SYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVA-CGVGICAESTFAI 237 (1080)
T ss_pred eEEEEEEccCC-------ceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhh-hcCcccccceEEE
Confidence 79999999999 7888887 58999999988773221 0 00000 0001111000000 0000 00011222
Q ss_pred EE------eeeccccCcCC-----------c--cCCCCCCccccEEEEecCCccccceeeecc-----------------
Q 040987 191 LS------VEDTRETTKSH-----------K--KEPRPNTMNGRICKCNLTESRLAGGVTLAE----------------- 234 (762)
Q Consensus 191 ~~------~~~~~~~~~~~-----------~--~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~----------------- 234 (762)
.. ..+++++..|. + -+-++|+.+|.|++++.++..........|
T Consensus 238 t~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s 317 (1080)
T KOG1408|consen 238 TAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS 317 (1080)
T ss_pred ecccceeeechhhhhhhhhhhhccccceeeeecceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence 11 11122211110 0 001889999999999988755542222111
Q ss_pred ------CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----------CcEE
Q 040987 235 ------MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-----------QRIV 296 (762)
Q Consensus 235 ------~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----------~~~l 296 (762)
-....++.|.|....|. +-.|..++|||+++-... -.-.....|...|+.+.--|. ...+
T Consensus 318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kv--gk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKV--GKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccc--cceeeeeeccceeeeeccccccccCcccccCCccce
Confidence 11235678888888886 568999999999876643 222445578888888776551 1257
Q ss_pred EEeecCCeEEEEeccCCceeeccc-ccccccccccccCCCC---cccCCc---cccceeeeccccceeEEEEecCCCEEE
Q 040987 297 AAGDVTGRILIWRGFGDRTFATND-NKMNLNLMNNEEERPG---VRDNDD---ADLCTTWHWHPSEVSVLIFSSDGAYLY 369 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~h~~~v~~~~~s~~g~~l~ 369 (762)
.+++.|++|++|++.....-.... +..........-+... +..... .+...........+.+++.+|+|++|+
T Consensus 396 ~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLA 475 (1080)
T KOG1408|consen 396 TTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLA 475 (1080)
T ss_pred eEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceec
Confidence 899999999999987632111100 0000000000000000 000000 001111222445789999999999999
Q ss_pred EEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCc
Q 040987 370 SGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESP---DPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 370 s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 444 (762)
+|...|++++|++..-+.. ....|...|.|+.||. ..++|++++.|.-|+|||+.. ..+++++.+|.
T Consensus 476 sGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HS-------- 547 (1080)
T KOG1408|consen 476 SGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHS-------- 547 (1080)
T ss_pred ccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccc--------
Confidence 9999999999999887764 5677899999999975 357899999999999999875 56677888877
Q ss_pred ccCceeeEEEeCCC--CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDG--GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..|+++.|.-.| ..+++++.|..|.+--.........+. +.+.. -....+++++..|..+++++++
T Consensus 548 --ssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~---r~t~t--~~ktTlYDm~Vdp~~k~v~t~c----- 615 (1080)
T KOG1408|consen 548 --SSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP---RHTQT--LSKTTLYDMAVDPTSKLVVTVC----- 615 (1080)
T ss_pred --cceeEEEEeecCCceEEEeccCchhhheehhccccCceecc---ccccc--cccceEEEeeeCCCcceEEEEe-----
Confidence 889999998877 678999999866543332211111111 11100 0146689999999999999999
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.|..|+||++++++....++.. .+| .+....+...|.|.|+|+...|+++.++|+.+++++...
T Consensus 616 ----QDrnirif~i~sgKq~k~FKgs--~~~-eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m--------- 679 (1080)
T KOG1408|consen 616 ----QDRNIRIFDIESGKQVKSFKGS--RDH-EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM--------- 679 (1080)
T ss_pred ----cccceEEEeccccceeeeeccc--ccC-CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh---------
Confidence 8999999999999998887652 456 677888999999999999999999999999999877665
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.+|...|+.+.|++|.+.|++.+ ||.|.||.+..
T Consensus 680 --~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 680 --TGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred --cCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 48999999999999999999987 99999999753
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=285.11 Aligned_cols=334 Identities=16% Similarity=0.221 Sum_probs=285.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|.+.|++++.+|+.+++++|+.|..-.+|++.++. ....+.+|.+
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge------------------------------~~~eltgHKD 107 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE------------------------------FAGELTGHKD 107 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc------------------------------ceeEecCCCC
Confidence 5677899999999999999999999999999999997774 3468899999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|+++.|+.||.+|++|+.+|.|++|+..++..... ......+.-+.|+|.+..|++|+.||.+.+|.+.++...+.+.
T Consensus 108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~ 187 (399)
T KOG0296|consen 108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMS 187 (399)
T ss_pred ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEec
Confidence 999999999999999999999999999999987643 3456678899999999999999999999999999988899999
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..+.+-.|.|||+.++++..||+|++||..+++++..+.... .....++.++..+..+
T Consensus 188 Gh~----------~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e---------~~~~~~~~~~~~~~~~ 248 (399)
T KOG0296|consen 188 GHN----------SPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE---------GLELPCISLNLAGSTL 248 (399)
T ss_pred CCC----------CCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc---------cCcCCcccccccccee
Confidence 988 677899999999999999999999999999998877765433 2346778888888888
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEE--E-eecCC--CCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--I-VYEPH--RDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~-~~~~h--~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
..++ .++.+++-+..+++.+..... . +...+ ....|.++.++..-.+.|+|+.||+|.|||+...+
T Consensus 249 ~~g~---------~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 249 TKGN---------SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred Eecc---------CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 8887 777888877777766554431 0 01122 12344445555566789999999999999999888
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.+...+ |...|+.+.|-+ ..+|+++. +|.|+.||.++|+++..+.||..+|.+++++|+.++++|+
T Consensus 320 ~R~~c~------------he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 320 LRHICE------------HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred hheecc------------CCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 877764 888999999998 67777776 9999999999999999999999999999999999999999
Q ss_pred EcCCCCeEEEEECC
Q 040987 668 SWGSKPQLSVWNMS 681 (762)
Q Consensus 668 ~~d~~~~v~vwd~~ 681 (762)
|.|++ .+|+++.
T Consensus 387 s~D~~--a~VF~v~ 398 (399)
T KOG0296|consen 387 SDDNT--ALVFEVP 398 (399)
T ss_pred cCCCe--EEEEecC
Confidence 99998 9999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=273.43 Aligned_cols=288 Identities=17% Similarity=0.240 Sum_probs=249.9
Q ss_pred ceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 346 CTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
..++.+|.+.|+.++..+. ...+++++.|.++.+|++..... ..+.+|...|..++.++||++.++++.|+.+
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l 87 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL 87 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence 4678999999999999886 46788999999999999875432 3567889999999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||+.+++..+.|.+|. ..|.+++|++|.+.+++|+.|.+|.+|+...... .++.... + .
T Consensus 88 rlWDl~~g~~t~~f~GH~----------~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~--~------~ 148 (315)
T KOG0279|consen 88 RLWDLATGESTRRFVGHT----------KDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDS--H------R 148 (315)
T ss_pred EEEEecCCcEEEEEEecC----------CceEEEEecCCCceeecCCCcceeeeeeecccEE-EEEecCC--C------c
Confidence 999999999999999998 7889999999999999999999999999976532 2322211 1 5
Q ss_pred eeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..|.++.|+|+ ..+|++++ .|++|++||+++.+....+ .+| .+.++.+++||||.++++|+.|
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s---------~DktvKvWnl~~~~l~~~~-----~gh-~~~v~t~~vSpDGslcasGgkd 213 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSAS---------WDKTVKVWNLRNCQLRTTF-----IGH-SGYVNTVTVSPDGSLCASGGKD 213 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEcc---------CCceEEEEccCCcchhhcc-----ccc-cccEEEEEECCCCCEEecCCCC
Confidence 78999999998 67888888 8999999999998776655 688 9999999999999999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecc----c----
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGE----T---- 648 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~----~---- 648 (762)
|.+.+||++.++....+ .+...|.+++|+|+.-+|+.+.+..|+|||++++.++..++. .
T Consensus 214 g~~~LwdL~~~k~lysl------------~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~ 281 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYSL------------EAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKA 281 (315)
T ss_pred ceEEEEEccCCceeEec------------cCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhcccccccccccc
Confidence 99999999999987776 378999999999999888888888899999999987776532 1
Q ss_pred -cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 649 -LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 -~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.-...+++||+||..|+++..|+. |++|.+.
T Consensus 282 ~~~~clslaws~dG~tLf~g~td~~--irv~qv~ 313 (315)
T KOG0279|consen 282 GDPICLSLAWSADGQTLFAGYTDNV--IRVWQVA 313 (315)
T ss_pred CCcEEEEEEEcCCCcEEEeeecCCc--EEEEEee
Confidence 122677999999999999999998 9999875
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=272.25 Aligned_cols=297 Identities=13% Similarity=0.201 Sum_probs=254.2
Q ss_pred cceeeeccCCCceEEEECCCCCEE-E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYF-G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
++..+.+|++.|..++..+.+.-+ . ++.|..+.+|++.......-.+.+.+.+|...|..+..++||++.++++.|+.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~ 86 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGT 86 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccce
Confidence 346788999999999999986544 3 45799999999987655444456778899999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+++||+.+++ ..+.|.+|...|.+++|++|.+.+++|+.|.+|.+|+...
T Consensus 87 lrlWDl~~g~------------------------------~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 87 LRLWDLATGE------------------------------STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred EEEEEecCCc------------------------------EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 9999998874 3478999999999999999999999999999999999987
Q ss_pred CceeccCCC--CCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 385 GKKKFLPRI--GSPLLYFTESPD--PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 385 ~~~~~~~~~--~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
......... .+-|.|+.|+|+ ...|+.++.|+++++||+++.+....+.+|. +.++.+++||||..
T Consensus 137 ~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~----------~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 137 VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHS----------GYVNTVTVSPDGSL 206 (315)
T ss_pred cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccc----------ccEEEEEECCCCCE
Confidence 665444443 678999999998 6889999999999999999999999999988 89999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
.++|+.||.+.+||+..++.++.+.. ...|.+++|+|+.-.|+.+. +..|+|||+++..
T Consensus 207 casGgkdg~~~LwdL~~~k~lysl~a-----------~~~v~sl~fspnrywL~~at----------~~sIkIwdl~~~~ 265 (315)
T KOG0279|consen 207 CASGGKDGEAMLWDLNEGKNLYSLEA-----------FDIVNSLCFSPNRYWLCAAT----------ATSIKIWDLESKA 265 (315)
T ss_pred EecCCCCceEEEEEccCCceeEeccC-----------CCeEeeEEecCCceeEeecc----------CCceEEEeccchh
Confidence 99999999999999999988776654 67799999999998888874 4579999999998
Q ss_pred ceeEEEEEeecC----CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 541 KEFTLSTIVYEP----HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 541 ~~~~~~~~~~~~----h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
.+..+......+ . .....+++|++||..|+.|-.|+.|++|.+.
T Consensus 266 ~v~~l~~d~~g~s~~~~-~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 266 VVEELKLDGIGPSSKAG-DPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhccccccccccccC-CcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 877665321111 1 2235678999999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=286.18 Aligned_cols=336 Identities=18% Similarity=0.311 Sum_probs=282.3
Q ss_pred eeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee----
Q 040987 275 KITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW---- 349 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 349 (762)
+... |...|.+++|+|-.. .+++|+.|-..++|++......-..+. .+ +.....
T Consensus 173 kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~--------------~l------rh~~~~~~~s 231 (524)
T KOG0273|consen 173 KVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL--------------VL------RHCIREGGKS 231 (524)
T ss_pred eecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh--------------hh------hhhhhhhccc
Confidence 4444 999999999999655 899999999999999864210000000 00 000000
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
......|++++|+.+|..|++|+.||.+++|+........+..|.++|.++.|+.+|.+|++++.|+++.+||..++...
T Consensus 232 ~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 232 VPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 11245799999999999999999999999999998888889999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+.-|. .....+.|-.+. .+++++.|+.|+++.+....+..++.. | .+.|.++.|.|.
T Consensus 312 q~f~~~s----------~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~G----H------~g~V~alk~n~t 370 (524)
T KOG0273|consen 312 QQFEFHS----------APALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIG----H------HGEVNALKWNPT 370 (524)
T ss_pred Eeeeecc----------CCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeec----c------cCceEEEEECCC
Confidence 9988876 333667777654 588889999999999988877776654 2 788999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC---------eEEEEeCCCcEE
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR---------AAVSSSYGGDFK 580 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~---------~l~~~~~dg~i~ 580 (762)
|.+|++++ .|++++||+.........+ .+| ...|..+.|+|+|. .+++++.|++|+
T Consensus 371 g~LLaS~S---------dD~TlkiWs~~~~~~~~~l-----~~H-skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 371 GSLLASCS---------DDGTLKIWSMGQSNSVHDL-----QAH-SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred CceEEEec---------CCCeeEeeecCCCcchhhh-----hhh-ccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 99999999 9999999998887766665 578 88999999999754 799999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
+||+..+.+...+ ..|..+|++++|||+|+++|+|+ ||.|.+|+.++++..+...+ .+.|..++|+.
T Consensus 436 lwdv~~gv~i~~f-----------~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 436 LWDVESGVPIHTL-----------MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA 503 (524)
T ss_pred EEEccCCceeEee-----------ccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC
Confidence 9999988877665 46899999999999999999999 99999999999999999874 46699999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+|..|..+-.|+. +++-|+.
T Consensus 504 ~G~kl~~~~sd~~--vcvldlr 523 (524)
T KOG0273|consen 504 AGDKLGACASDGS--VCVLDLR 523 (524)
T ss_pred CCCEEEEEecCCC--ceEEEec
Confidence 9999999999998 9888764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=285.25 Aligned_cols=315 Identities=19% Similarity=0.281 Sum_probs=268.9
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCC------ccee-----eeecC----cccccCCceeecCCCEEEEEe-CCEEE
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPA------VNSK-----MIRGG----RSYVSSPPAFSNDVKRLLVCT-SNTVS 97 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~------~~~~-----~~~~h----~~~v~~~~~~s~dg~~la~~~-~~~i~ 97 (762)
..+.....+..++|+|+.|-..++|++.. .+.. ..-++ ...|++ ++|+.||.+||+|. +|.++
T Consensus 182 ~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~-L~Wn~~G~~LatG~~~G~~r 260 (524)
T KOG0273|consen 182 FICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTS-LDWNNDGTLLATGSEDGEAR 260 (524)
T ss_pred EEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcce-EEecCCCCeEEEeecCcEEE
Confidence 33333334556899999999999999985 1110 01112 356887 99999999999999 89999
Q ss_pred EEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccC
Q 040987 98 IFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQ 176 (762)
Q Consensus 98 iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~ 176 (762)
||+. +|.++.+|..|.++|.++.|+.+| .||++++.|+++.+||..+|+..+.++.|. +...+.+
T Consensus 261 iw~~-~G~l~~tl~~HkgPI~slKWnk~G-------~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW------ 326 (524)
T KOG0273|consen 261 IWNK-DGNLISTLGQHKGPIFSLKWNKKG-------TYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDW------ 326 (524)
T ss_pred EEec-CchhhhhhhccCCceEEEEEcCCC-------CEEEeccCCccEEEEeccCceEEEeeeeccCCccceEE------
Confidence 9995 899999999999999999999999 799999999999999999999999999887 4244432
Q ss_pred CcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC
Q 040987 177 PAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ 255 (762)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~ 255 (762)
..+.. | ++.+.|+.|.++.+...+++ ....+|.+.|.++.|.|.|.+|+++ +|
T Consensus 327 --~~~~~------F-----------------~ts~td~~i~V~kv~~~~P~-~t~~GH~g~V~alk~n~tg~LLaS~SdD 380 (524)
T KOG0273|consen 327 --QSNDE------F-----------------ATSSTDGCIHVCKVGEDRPV-KTFIGHHGEVNALKWNPTGSLLASCSDD 380 (524)
T ss_pred --ecCce------E-----------------eecCCCceEEEEEecCCCcc-eeeecccCceEEEEECCCCceEEEecCC
Confidence 00111 1 77889999999999999988 5666699999999999999999955 79
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc---------EEEEeecCCeEEEEeccCCceeeccccccccc
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR---------IVAAGDVTGRILIWRGFGDRTFATNDNKMNLN 326 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---------~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 326 (762)
++++||........ .-+..|...|..+.|+|+|. .+++++.|++|++||+..+
T Consensus 381 ~TlkiWs~~~~~~~-----~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g------------- 442 (524)
T KOG0273|consen 381 GTLKIWSMGQSNSV-----HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG------------- 442 (524)
T ss_pred CeeEeeecCCCcch-----hhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------
Confidence 99999998877765 67889999999999999764 7899999999999999776
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
.++..|..|..+|++++|+|+|+++++|+.||.|.+|+..+++........+.|..++|+.+|
T Consensus 443 -----------------v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G 505 (524)
T KOG0273|consen 443 -----------------VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAG 505 (524)
T ss_pred -----------------ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCC
Confidence 456789999999999999999999999999999999999999998888888889999999999
Q ss_pred CeEEEEecCCcEEEEEcC
Q 040987 407 SLSSISCADNQVHLLKMP 424 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~ 424 (762)
.+|..+..|+.+++.|++
T Consensus 506 ~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 506 DKLGACASDGSVCVLDLR 523 (524)
T ss_pred CEEEEEecCCCceEEEec
Confidence 999999999999999875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=295.65 Aligned_cols=352 Identities=15% Similarity=0.239 Sum_probs=283.2
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEE
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~ 146 (762)
+...+.+|.. ++|.|..-++.++- +|.|.+||..=+.++..|.+|.++|..++|+|.+ .+++||+.|..|+
T Consensus 5 fEskSsRvKg-lsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~q-------plFVSGGDDykIk 76 (1202)
T KOG0292|consen 5 FESKSSRVKG-LSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQ-------PLFVSGGDDYKIK 76 (1202)
T ss_pred hhcccccccc-eecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCC-------CeEEecCCccEEE
Confidence 3445678887 99999999999998 7999999999999999999999999999999999 6889999999999
Q ss_pred EEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 147 YWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
||+..+.+|+.++.+|. -|..+.| ..+.|+. ++++.|-+|+|||+.+++
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~F----------HheyPWI--------------------lSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFF----------HHEYPWI--------------------LSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred EEecccceehhhhccccceeEEeec----------cCCCceE--------------------EEccCCCeEEEEeccCCc
Confidence 99999999999999997 5666655 2222222 678999999999999999
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh------------------------hheeeeeeecc
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE------------------------RVVMRKITLHH 280 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~------------------------~~~~~~~~~~~ 280 (762)
++ ..+.+|.-.|.|.+|+|...+++++ -|.+|+|||+..-... ...++.++.+|
T Consensus 127 ~i-avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGH 205 (1202)
T KOG0292|consen 127 CI-AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGH 205 (1202)
T ss_pred eE-EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeeccc
Confidence 99 8999999999999999988888854 6999999998632110 12356778899
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
..+|+-++|+|.-..+++|+.|..|++|.+...+..+ +.+.++|.+.|.++-
T Consensus 206 DRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWE----------------------------vDtcrgH~nnVssvl 257 (1202)
T KOG0292|consen 206 DRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWE----------------------------VDTCRGHYNNVSSVL 257 (1202)
T ss_pred ccccceEEecCCcceEEecCCcceeeEEEecccccee----------------------------ehhhhcccCCcceEE
Confidence 9999999999999999999999999999987665553 467889999999999
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
|+|..+++++.+.|++|++||+....... +....+....++-+|..+++++| .|+.+.+|.++..++
T Consensus 258 fhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAg-HDsGm~VFkleRErp----------- 325 (1202)
T KOG0292|consen 258 FHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAG-HDSGMIVFKLERERP----------- 325 (1202)
T ss_pred ecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeee-cCCceEEEEEcccCc-----------
Confidence 99999999999999999999999877654 44566789999999999999877 666777777653222
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
+.+++ ++.|...- |..|+.+|+.+.+.......-..+ ....++.++.++|....+..++
T Consensus 326 -----------a~~v~--~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g-----~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 326 -----------AYAVN--GNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPG-----TLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred -----------eEEEc--CCEEEEEc-cceEEeeeccccccceeEeccCCC-----cccCCcceeeeccccCeEEEEe
Confidence 22222 33444443 888999999886544433322111 0145678899999776655554
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=286.29 Aligned_cols=552 Identities=12% Similarity=0.160 Sum_probs=383.2
Q ss_pred EEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCC---EEEEEe-CCEEEEEEcccc--eEEeeecCCccce
Q 040987 45 IFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVK---RLLVCT-SNTVSIFSTSTG--LQISSLEGHKAPV 117 (762)
Q Consensus 45 ~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~---~la~~~-~~~i~iwd~~~~--~~~~~l~~h~~~V 117 (762)
++|.| ....|.+||-.+. ....+.||.++|+| +.+-|+.+ ++++|+ |+.|++|.++.. ..+.++++|...+
T Consensus 27 ~vafG-a~~~Iav~dp~k~~i~t~l~GH~a~VnC-~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~ 104 (764)
T KOG1063|consen 27 LVAFG-AGPAIAVADPEKILIVTTLDGHVARVNC-VHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKEC 104 (764)
T ss_pred eEEec-CCceEEEeCcccceeEEeccCCccceEE-EEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeE
Confidence 45554 3466778887764 55677999999998 99999888 788888 899999999844 3567788877766
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcc--eEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPE--LLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|+.=.+. .....+.|+++.+||.+..+ +...+..... .+..++ |+++...+
T Consensus 105 ~cv~a~~~---------~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k----~~ipLc-------------L~~~~~~~ 158 (764)
T KOG1063|consen 105 VCVVARSS---------VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIK----EAIPLC-------------LAALKNNK 158 (764)
T ss_pred EEEEeeee---------EEEeeccCceEEEeecCCCceeeehheehhhh----hHhhHH-------------HhhhccCC
Confidence 66643222 22223789999999995554 3333332210 001111 11111111
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCcccc-ceeeeccCCCceEEEECCCCC---EEEEE-eCCeEEEEEccCchhh-
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLA-GGVTLAEMKEPQVITISSSGK---YFGIR-KQRKLLIWKVPDVEAE- 269 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~spdg~---~la~~-~~~~i~iwd~~~~~~~- 269 (762)
.... +.|+.+..|.++.-..++.. ...+.+|...|.+++|..-+. +||++ .|..|+||.+.-+...
T Consensus 159 ~~ll--------a~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~ 230 (764)
T KOG1063|consen 159 TFLL--------ACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDED 230 (764)
T ss_pred cEEE--------EecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCcc
Confidence 1111 77888889998877655433 256789999999999987554 55644 7999999987533300
Q ss_pred -------------------hhee------eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc
Q 040987 270 -------------------RVVM------RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN 324 (762)
Q Consensus 270 -------------------~~~~------~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 324 (762)
...+ ...+.+|.+.|.++.|+|.+..|++++.|.++.+|...+..-+-..
T Consensus 231 ~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~----- 305 (764)
T KOG1063|consen 231 SNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD----- 305 (764)
T ss_pred ccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEE-----
Confidence 0000 1234599999999999999999999999999999987655222100
Q ss_pred ccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC-ce---eccCCCCCCeEEE
Q 040987 325 LNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG-KK---KFLPRIGSPLLYF 400 (762)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~-~~---~~~~~~~~~v~~~ 400 (762)
.-.+..+.+.....+...|+|+++.+++-+..|..++|..... .. ....+|-..|..+
T Consensus 306 ------------------~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 306 ------------------VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred ------------------EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 0111222344556889999999999999999999999983332 22 3456788899999
Q ss_pred EeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC-
Q 040987 401 TESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD- 478 (762)
Q Consensus 401 ~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~- 478 (762)
+|+|.|.+|++.+.|.+-+++-.-. .+.-..+. .|..|...+.++++-+....+++|.++..+|+|+....
T Consensus 368 ~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEia-------RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA-------RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred eecCCCCEEEEeccccceeeecccccccceeeec-------ccccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 9999999999999999999987651 11122222 23345567889999886667888888888898875421
Q ss_pred --------------C-----------------ceee------------EEee------ccccc----------------C
Q 040987 479 --------------R-----------------GISE------------VQVC------ERNHQ----------------P 493 (762)
Q Consensus 479 --------------~-----------------~~~~------------~~~~------~~~~~----------------~ 493 (762)
. .... .+.. .-.+. .
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 0 0000 0000 00000 1
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
..+|...|.+++.+|+|+++|+++.. ....-..|++|+..+......+ .+| .-.|+.++|||||++|++.
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS----~~~ehAvI~lw~t~~W~~~~~L-----~~H-sLTVT~l~FSpdg~~LLsv 590 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKS----SLKEHAVIRLWNTANWLQVQEL-----EGH-SLTVTRLAFSPDGRYLLSV 590 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhh----CCccceEEEEEeccchhhhhee-----ccc-ceEEEEEEECCCCcEEEEe
Confidence 12378899999999999999999732 2224468999999988777665 678 9999999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC--eEEEE--eccc
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN--VLVAV--IGET 648 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~--~~~~~--l~~~ 648 (762)
+.|+++.+|+......... .+.+ ...|..-|.++.|+||++++|+++ |.+|++|..... +.+.. ...+
T Consensus 591 sRDRt~sl~~~~~~~~~e~----~fa~---~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 591 SRDRTVSLYEVQEDIKDEF----RFAC---LKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred ecCceEEeeeeecccchhh----hhcc---ccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 9999999999854432211 1111 457899999999999999999999 999999999877 44433 2347
Q ss_pred cCceeEEEEeC----C-CCEEEEEEcCCCCeEEEEECC
Q 040987 649 LTPIMNMSFVG----S-SEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 ~~~v~~~~~s~----d-g~~l~s~~~d~~~~v~vwd~~ 681 (762)
...|+.++|.| + +..++.|-..|. |.+|...
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~Ge--I~l~~~~ 699 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGE--IVLWRRK 699 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccE--EEEEecc
Confidence 78899999988 2 225566666776 9999865
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=283.75 Aligned_cols=446 Identities=14% Similarity=0.161 Sum_probs=337.4
Q ss_pred eeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCc
Q 040987 108 SSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 108 ~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
+++..|+..|.++.|+|.. .++.++-..|.|.|||.++..+++.++... |+.+..|
T Consensus 7 rk~~~rSdRVKsVd~HPte-------Pw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kf---------------- 63 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTE-------PWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKF---------------- 63 (794)
T ss_pred hHhhccCCceeeeecCCCC-------ceEEEeeecCeeEEEecccceeeeeeeecccchhhhee----------------
Confidence 4566799999999999999 577788889999999999999999999887 8888766
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~ 265 (762)
++- +.|.++|+.|..|++|+..+++.+ .....|...|++++.+|...++.+ ++|-.|++||.+.
T Consensus 64 -iaR-------------knWiv~GsDD~~IrVfnynt~ekV-~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~ 128 (794)
T KOG0276|consen 64 -IAR-------------KNWIVTGSDDMQIRVFNYNTGEKV-KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN 128 (794)
T ss_pred -eec-------------cceEEEecCCceEEEEecccceee-EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC
Confidence 222 122278999999999999999999 788899999999999999999985 4788999999987
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+- ...+.+.+|...|.+++|.| |.+.+|+++-|++|+||.+... .
T Consensus 129 ~w----a~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~------------------------------~ 174 (794)
T KOG0276|consen 129 EW----ACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP------------------------------H 174 (794)
T ss_pred ce----eeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC------------------------------C
Confidence 65 34578899999999999999 6679999999999999998544 3
Q ss_pred cceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
+..++.+|...|+++.+-+.| .+|++|++|.++++||..+..++ .+.+|...|..+.|+|.-..+++|+.||+++||
T Consensus 175 ~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriW 254 (794)
T KOG0276|consen 175 PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIW 254 (794)
T ss_pred CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEe
Confidence 557899999999999997744 69999999999999999999985 577899999999999999999999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+..+-+...++.-.. ..+.+++-.+.++.+++|.++|.+. ..+-.+.+
T Consensus 255 hs~Ty~lE~tLn~gl----------eRvW~I~~~k~~~~i~vG~Deg~i~-v~lgreeP--------------------- 302 (794)
T KOG0276|consen 255 NSKTYKLEKTLNYGL----------ERVWCIAAHKGDGKIAVGFDEGSVT-VKLGREEP--------------------- 302 (794)
T ss_pred cCcceehhhhhhcCC----------ceEEEEeecCCCCeEEEeccCCcEE-EEccCCCC---------------------
Confidence 999887777765443 6889999999988999998888554 34433322
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEE------EecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW------VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw------d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.+..++.|+.+-+... .-..+.+- ++..++.+. +.... -+...-.-..++-+|+|+++++++
T Consensus 303 -~vsMd~~gKIiwa~~~--------ei~~~~~ks~~~~~ev~DgErL~-LsvKe-Lgs~eiyPq~L~hsPNGrfV~Vcg- 370 (794)
T KOG0276|consen 303 -AVSMDSNGKIIWAVHS--------EIQAVNLKSVGAQKEVTDGERLP-LSVKE-LGSVEIYPQTLAHSPNGRFVVVCG- 370 (794)
T ss_pred -ceeecCCccEEEEcCc--------eeeeeeceeccCcccccCCcccc-chhhh-ccccccchHHhccCCCCcEEEEec-
Confidence 2333444444433321 11111111 222232211 10000 000011123577899999888776
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN 654 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~ 654 (762)
||.-.||..-..+. ..-+.-....|++|....|+-. ++.|+++ ++.+....+...- .
T Consensus 371 dGEyiIyTala~Rn----------------K~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~~----~ 428 (794)
T KOG0276|consen 371 DGEYIIYTALALRN----------------KAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDM----S 428 (794)
T ss_pred CccEEEEEeeehhh----------------cccccceeEEEcCCCCeEEEEecCCceEEE--ecceecccccccc----c
Confidence 78888886432111 1234556789999977777765 8999998 7777776664221 1
Q ss_pred EEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 655 MSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
..+--.|.+|...+.|. +++||.+++++++++.....
T Consensus 429 ~e~i~gg~Llg~~ss~~---~~fydW~~~~lVrrI~v~~k 465 (794)
T KOG0276|consen 429 AEGIFGGPLLGVRSSDF---LCFYDWESGELVRRIEVTSK 465 (794)
T ss_pred eeeecCCceEEEEeCCe---EEEEEcccceEEEEEeeccc
Confidence 22333567788888777 99999999999999887765
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=266.31 Aligned_cols=477 Identities=14% Similarity=0.156 Sum_probs=364.7
Q ss_pred eeEEEEecCCC--------eEEEEecCCcceeeeecC-cccccCCceeec--CCCEEEEEeC---CEEEEEEcccceEEe
Q 040987 43 SFIFAVARSSG--------LCRTAEYPAVNSKMIRGG-RSYVSSPPAFSN--DVKRLLVCTS---NTVSIFSTSTGLQIS 108 (762)
Q Consensus 43 ~~~~a~~~~~g--------~i~~~~~~~~~~~~~~~h-~~~v~~~~~~s~--dg~~la~~~~---~~i~iwd~~~~~~~~ 108 (762)
...+|+|...| .+++||..+.+.+...|. ...|.| ++||+ .|.+|+...+ ..+.|||.+.+..+.
T Consensus 116 ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~-vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~ 194 (626)
T KOG2106|consen 116 RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTC-VAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG 194 (626)
T ss_pred ceeeccCcccccCCCcCCCeeeecccccceeeeeecccccccee-eeecccCCCceEEEecCCCccccchhhchhhhccC
Confidence 56788887766 489999888777776664 445665 99997 4677777763 689999999988887
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE---Eecc--ceEEEeecccccCCcccCCC
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI---DVKF--SIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~---~~~~--~v~~~~~~~~~~~~~~~~~~ 183 (762)
..+.-...|....|.|.+. .++++++ .+.+.+|+++.+.+.++. +.++ -|.+++| ..++.
T Consensus 195 ~vk~sne~v~~a~FHPtd~------nliit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F--------~engd 259 (626)
T KOG2106|consen 195 PVKTSNEVVFLATFHPTDP------NLIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF--------LENGD 259 (626)
T ss_pred cceeccceEEEEEeccCCC------cEEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEE--------cCCCC
Confidence 7777788899999999996 5666666 589999999998776653 2222 4555555 33333
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEc
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~ 263 (762)
. ++|.++|.|.||+..+.+..++.. .|.+.|.+++...+|.+|..+.|..|..||-
T Consensus 260 v-----------------------iTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~ 315 (626)
T KOG2106|consen 260 V-----------------------ITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLSGGKDRKIILWDD 315 (626)
T ss_pred E-----------------------EeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEeecCccceEEeccc
Confidence 2 789999999999998888886666 9999999999999999999778999999993
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcc
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDA 343 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (762)
.-.+. ....+....+.|..++=...+ |+.|...+.|..=.++++-
T Consensus 316 ~y~k~----r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f----------------------------- 360 (626)
T KOG2106|consen 316 NYRKL----RETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGF----------------------------- 360 (626)
T ss_pred ccccc----ccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCc-----------------------------
Confidence 22221 112233455677777654333 7777777777665554432
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
.....+|.+..+.++.+|+.+++++++.|+.+++|+ ..+.........+..++.|+|.| .++.|...|...+.|.
T Consensus 361 --~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 361 --TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred --eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 245678999999999999999999999999999999 45555666677889999999999 9999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++...+..-.. . ..+..+.|+|+|.+||+|+.|+.|++|.+..+........... ..+|+.
T Consensus 436 e~~~lv~~~~d-~----------~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~--------gs~ith 496 (626)
T KOG2106|consen 436 ETQDLVTIHTD-N----------EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCS--------GSPITH 496 (626)
T ss_pred ccceeEEEEec-C----------CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeec--------CceeEE
Confidence 98666655444 3 5789999999999999999999999999976655443322211 467999
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE------------EEEee-cCCCCCceEEEEEcCCCCeE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL------------STIVY-EPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~------------~~~~~-~~h~~~~v~~~~~spd~~~l 570 (762)
+.||+|++++.+.+ .|-.|..|........... .-..+ ..+ ...|..++-+.+.+++
T Consensus 497 LDwS~Ds~~~~~~S---------~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~-~t~i~a~~rs~~~~~l 566 (626)
T KOG2106|consen 497 LDWSSDSQFLVSNS---------GDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSD-GTDINAVARSHCEKLL 566 (626)
T ss_pred eeecCCCceEEecc---------CceEEEEEccccCcccceecceeeeeeEEEEEEEEecccC-CchHHHhhhhhhhhhh
Confidence 99999999999998 8899999954433222111 11111 234 5677778888889999
Q ss_pred EEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 571 VSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 571 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
|+|.+.|.|++|...-......+ ....+|...|++++|..+...+.+.+ |..|..|++
T Consensus 567 A~gdd~g~v~lf~yPc~s~rA~~--------he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 567 ASGDDFGKVHLFSYPCSSPRAPS--------HEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hccccCceEEEEccccCCCcccc--------eeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999999987654443332 23457899999999999888888776 999999986
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=265.79 Aligned_cols=337 Identities=10% Similarity=0.127 Sum_probs=282.5
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+..|...|.+++.+|+.+++|+| .|..-.+|++.+++.. ....+|++.|+++.|+.||.+||+|+.+|.|+|
T Consensus 58 ~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred eehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----eEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 3567799999999999988888855 7899999999999865 678899999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~ 386 (762)
|...++... ..+...-..+.-+.|+|-+..|+.|+.||.+.+|.+.+ +.
T Consensus 133 ~~~stg~~~------------------------------~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~ 182 (399)
T KOG0296|consen 133 FKVSTGGEQ------------------------------WKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL 182 (399)
T ss_pred EEcccCceE------------------------------EEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcce
Confidence 999877543 33444556788899999999999999999999999998 55
Q ss_pred eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 387 KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
.+.+.+|..++++-.|.|+|++++++..||+|++|+..+++++..+.+... ....++.++..+..++.|+.
T Consensus 183 ~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~---------~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 183 CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG---------LELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc---------CcCCccccccccceeEeccC
Confidence 677889999999999999999999999999999999999999998875441 45578889999999999999
Q ss_pred CceEEEEEcCCCCceeeEEe-ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQV-CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
++.+++.+..+++.+..... ...-....+.....|..+.++..-.+.|+|+ -||+|.|||+...+.....
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~---------vdG~i~iyD~a~~~~R~~c 324 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS---------VDGTIAIYDLAASTLRHIC 324 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc---------ccceEEEEecccchhheec
Confidence 99999999888876654432 0000011111133455555666677889998 8899999999988776554
Q ss_pred EEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.| ...|..+.|-+ ..+|++++.+|.|+.||.++|...... .+|...|.+++++|+.+++++
T Consensus 325 ------~h-e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y-----------~GH~~~Il~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 325 ------EH-EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY-----------TGHQMGILDFALSPQKRLVVT 385 (399)
T ss_pred ------cC-CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE-----------ecCchheeEEEEcCCCcEEEE
Confidence 46 78899999998 789999999999999999999877665 589999999999999999999
Q ss_pred Ec-CCeEEEEeCC
Q 040987 626 AA-ETVITLWDPD 637 (762)
Q Consensus 626 ~~-d~~i~iwd~~ 637 (762)
++ |++.+|+++.
T Consensus 386 ~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 386 VSDDNTALVFEVP 398 (399)
T ss_pred ecCCCeEEEEecC
Confidence 99 9999999864
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=251.06 Aligned_cols=300 Identities=15% Similarity=0.204 Sum_probs=241.1
Q ss_pred eEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
..++++++|.++|..++|+|. | ..|||++.|+.|+||+...+.......
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g-------~ilAscg~Dk~vriw~~~~~~s~~ck~----------------------- 54 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKG-------VILASCGTDKAVRIWSTSSGDSWTCKT----------------------- 54 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCc-------eEEEeecCCceEEEEecCCCCcEEEEE-----------------------
Confidence 356789999999999999999 7 688999999999999987533211100
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEE
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWK 262 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd 262 (762)
....+|+..|++++|+|.|++||++ .|.++.||.
T Consensus 55 ---------------------------------------------vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~ 89 (312)
T KOG0645|consen 55 ---------------------------------------------VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWK 89 (312)
T ss_pred ---------------------------------------------eccccchheeeeeeecCCCcEEEEeeccceEEEee
Confidence 1233688899999999999999954 799999999
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
-..++. .....+.+|...|.|++|+++|++||++++|..|.||.+.....+
T Consensus 90 k~~~ef---ecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------------------------- 140 (312)
T KOG0645|consen 90 KEDGEF---ECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------------------------- 140 (312)
T ss_pred cCCCce---eEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE--------------------------
Confidence 887776 345778899999999999999999999999999999999766555
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
++...++.|...|..+.|+|...+|++++.|.+|++|+-.. ... ..+.++...|.+++|++.|..|++++.|+++
T Consensus 141 -ec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 141 -ECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred -EEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 47789999999999999999999999999999999998773 322 4577788899999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+||...+. +. ..|...+..+.|. ...|++++.|+.|++|.....-.-..+..... ....|.
T Consensus 220 ~Iw~~~~~-----~~---------~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~---~~~aHe 280 (312)
T KOG0645|consen 220 SIWRLYTD-----LS---------GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK---KEGAHE 280 (312)
T ss_pred EeeeeccC-----cc---------hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh---hhcccc
Confidence 99986521 11 1233677889998 45799999999999998764321111111111 112236
Q ss_pred eeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 499 VVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 499 ~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..|++++|+|. ..+|++++ .||.+++|.+.
T Consensus 281 ~dVNsV~w~p~~~~~L~s~~---------DDG~v~~W~l~ 311 (312)
T KOG0645|consen 281 VDVNSVQWNPKVSNRLASGG---------DDGIVNFWELE 311 (312)
T ss_pred cccceEEEcCCCCCceeecC---------CCceEEEEEec
Confidence 78999999995 67888888 89999999875
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=250.89 Aligned_cols=297 Identities=21% Similarity=0.287 Sum_probs=240.5
Q ss_pred eeeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEccc---ceEEeee-cCCccceeEEEEeCCCCcccceeeeEEe
Q 040987 65 SKMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST---GLQISSL-EGHKAPVTTVIVVPASTPATKILSYCWT 138 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~---~~~~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s 138 (762)
...+.||++++-. ++|+|- |..||+++ |+.|+||+... -.+...+ .+|...|.+++|+|.| +|||+
T Consensus 7 ~~~~~gh~~r~W~-~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-------~~La~ 78 (312)
T KOG0645|consen 7 EQKLSGHKDRVWS-VAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-------RYLAS 78 (312)
T ss_pred EEeecCCCCcEEE-EEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-------cEEEE
Confidence 4567999999997 999998 88999999 79999999874 3455555 4799999999999999 79999
Q ss_pred eecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEE
Q 040987 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICK 218 (762)
Q Consensus 139 ~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (762)
+|.|.++.||.-..++...
T Consensus 79 aSFD~t~~Iw~k~~~efec------------------------------------------------------------- 97 (312)
T KOG0645|consen 79 ASFDATVVIWKKEDGEFEC------------------------------------------------------------- 97 (312)
T ss_pred eeccceEEEeecCCCceeE-------------------------------------------------------------
Confidence 9999999999865443111
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
+ ..+.+|...|.+++||++|++||++ .|+.|.||.+..+... .+...+..|...|..+.|+|...+|+
T Consensus 98 --------v-~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf--ec~aVL~~HtqDVK~V~WHPt~dlL~ 166 (312)
T KOG0645|consen 98 --------V-ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF--ECIAVLQEHTQDVKHVIWHPTEDLLF 166 (312)
T ss_pred --------E-eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE--EEEeeeccccccccEEEEcCCcceeE
Confidence 0 3566788899999999999999955 7999999999866554 66688899999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+++.|++|++|+-... +++++++++.+|...|.+++|++.|.+|++++.|+++
T Consensus 167 S~SYDnTIk~~~~~~d---------------------------ddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv 219 (312)
T KOG0645|consen 167 SCSYDNTIKVYRDEDD---------------------------DDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV 219 (312)
T ss_pred EeccCCeEEEEeecCC---------------------------CCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence 9999999999986432 4667889999999999999999999999999999999
Q ss_pred EEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 378 VVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 378 ~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
++|...+. ....|...++.+.|. ...|++++.|+.|++|.-...-.-..+.- .......|+..|++++|+|.
T Consensus 220 ~Iw~~~~~---~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l---~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 220 SIWRLYTD---LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNL---LAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred EeeeeccC---cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHH---HHhhhcccccccceEEEcCC
Confidence 99986532 123355678889998 56899999999999997664211111100 00011234578999999994
Q ss_pred -CCEEEEeecCceEEEEEcC
Q 040987 458 -GGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 458 -~~~l~~~~~dg~i~i~d~~ 476 (762)
.++|++++.||.+++|.+.
T Consensus 292 ~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 292 VSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCceeecCCCceEEEEEec
Confidence 6789999999999999874
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=264.90 Aligned_cols=286 Identities=19% Similarity=0.278 Sum_probs=256.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|+.+-|+|+-..+++++.|++|++||..+++ +...+++|.+
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~------------------------------~e~~LrGHt~ 151 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGE------------------------------LERSLRGHTD 151 (406)
T ss_pred hhhhccccceeeeeeccCceEEEEecCCceEEEEEccchh------------------------------hhhhhhcccc
Confidence 4566899999999999999999999999999999998774 4578999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.+.+++|+..|+++++++.|-.+.+||.++... ....+|...|.++.|-|.|.++++++.|.+|+.|++.++-++.++
T Consensus 152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec
Confidence 999999999999999999998899999987432 457788889999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD--- 509 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--- 509 (762)
.+|. ..|..+..+.||..+++++.|.++++|-+.+++....+. .| ..+|.+++|.|.
T Consensus 232 ~~h~----------ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR----~h------Eh~vEci~wap~~~~ 291 (406)
T KOG0295|consen 232 PGHS----------EWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR----EH------EHPVECIAWAPESSY 291 (406)
T ss_pred cCch----------HhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh----cc------ccceEEEEecccccC
Confidence 9988 799999999999999999999999999999885544432 22 667888888764
Q ss_pred ------------CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 510 ------------GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 510 ------------g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
++++++++ .|++|++||+.++.++.++ .+| .+.|..++|+|.|+||+++.+|+
T Consensus 292 ~~i~~at~~~~~~~~l~s~S---------rDktIk~wdv~tg~cL~tL-----~gh-dnwVr~~af~p~Gkyi~ScaDDk 356 (406)
T KOG0295|consen 292 PSISEATGSTNGGQVLGSGS---------RDKTIKIWDVSTGMCLFTL-----VGH-DNWVRGVAFSPGGKYILSCADDK 356 (406)
T ss_pred cchhhccCCCCCccEEEeec---------ccceEEEEeccCCeEEEEE-----ecc-cceeeeeEEcCCCeEEEEEecCC
Confidence 25778887 8999999999999988887 589 99999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
++++||+++.++.... ..|..-++++.|..+-.++++|+ |.++++|.-
T Consensus 357 tlrvwdl~~~~cmk~~-----------~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 357 TLRVWDLKNLQCMKTL-----------EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cEEEEEeccceeeecc-----------CCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 9999999998877766 37889999999999999999999 999999964
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=265.85 Aligned_cols=495 Identities=11% Similarity=0.124 Sum_probs=353.1
Q ss_pred eeEEEEecCCCeEEEEecCC--cceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEE
Q 040987 43 SFIFAVARSSGLCRTAEYPA--VNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTV 120 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~--~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v 120 (762)
+..+|++-.||.|.+|++.. -+...+.|+++.-..+++|++.++++-++.+|.|.-||+.+++++..++...+.|+++
T Consensus 37 S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsi 116 (691)
T KOG2048|consen 37 SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSI 116 (691)
T ss_pred CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEE
Confidence 45699999999999999986 4455678887664445999987777777779999999999999999999999999999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccC
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT 200 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (762)
+.+|.+ ..++.|++||.+...+...++.....
T Consensus 117 ai~p~~-------~~l~IgcddGvl~~~s~~p~~I~~~r----------------------------------------- 148 (691)
T KOG2048|consen 117 AINPEN-------TILAIGCDDGVLYDFSIGPDKITYKR----------------------------------------- 148 (691)
T ss_pred EeCCcc-------ceEEeecCCceEEEEecCCceEEEEe-----------------------------------------
Confidence 999999 67889999997777777665543321
Q ss_pred cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhhe---eeee
Q 040987 201 KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVV---MRKI 276 (762)
Q Consensus 201 ~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~---~~~~ 276 (762)
.+...++.+.++.|+|++..|++| .||.|++||...+...... +...
T Consensus 149 -----------------------------~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 149 -----------------------------SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred -----------------------------ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 122235778899999999988855 7999999999988764100 0011
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
......-|.++.|-.++ .+++|...|+|.+||...+ .+++.+..|...|
T Consensus 200 ~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g------------------------------TLiqS~~~h~adV 248 (691)
T KOG2048|consen 200 SKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG------------------------------TLIQSHSCHDADV 248 (691)
T ss_pred ccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc------------------------------chhhhhhhhhcce
Confidence 11233457788887666 6899999999999998665 3456777899999
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+++..+++.++++++.|+.|..+...++.. .....|...+.+++..++ .+++|+.|..+.+-.....+
T Consensus 249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~---- 322 (691)
T KOG2048|consen 249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK---- 322 (691)
T ss_pred eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccccC----
Confidence 9999999999999999999999998877643 235567788999998877 88888889888876554311
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc------eeeEEeecccccCCCCcceeEEEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG------ISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
+..|..+...+. + ..+...|.. +|+.--....+.+|.+.+... ...+....+. ...|.+.+
T Consensus 323 ~~~h~~~~~~p~---~--~~v~~a~~~-~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~-------~~nIs~~a 389 (691)
T KOG2048|consen 323 NMDHRQKNLFPA---S--DRVSVAPEN-RLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKE-------KENISCAA 389 (691)
T ss_pred chhhhccccccc---c--ceeecCccc-eEEEEeccccccceeccCcccccccChhhheeeecCC-------ccceeeec
Confidence 111111000000 0 112233333 344434455577777765411 1111111111 45689999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWIC 584 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~ 584 (762)
.||+|++++.+.. ...++|.+.....+........... ......+.|+-|++.++.++ .+..+.++++
T Consensus 390 iSPdg~~Ia~st~----------~~~~iy~L~~~~~vk~~~v~~~~~~-~~~a~~i~ftid~~k~~~~s~~~~~le~~el 458 (691)
T KOG2048|consen 390 ISPDGNLIAISTV----------SRTKIYRLQPDPNVKVINVDDVPLA-LLDASAISFTIDKNKLFLVSKNIFSLEEFEL 458 (691)
T ss_pred cCCCCCEEEEeec----------cceEEEEeccCcceeEEEeccchhh-hccceeeEEEecCceEEEEecccceeEEEEe
Confidence 9999999999853 4788888876443222211111111 33567788898988888877 6677888888
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-CCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG-SSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~ 662 (762)
.+........ ...+.....|+.+..||||+|||+.+ .|.|.+|++++++.......-...++.++|+| +-.
T Consensus 459 ~~ps~kel~~-------~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~ 531 (691)
T KOG2048|consen 459 ETPSFKELKS-------IQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRN 531 (691)
T ss_pred cCcchhhhhc-------cccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccC
Confidence 7665544332 00113467899999999999999988 99999999999876655534457799999995 667
Q ss_pred EEEEEEcCCCCeEEEEECCCCc
Q 040987 663 YLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
.|+.+..++. |.-||++...
T Consensus 532 ~lvvats~nQ--v~efdi~~~~ 551 (691)
T KOG2048|consen 532 RLVVATSNNQ--VFEFDIEARN 551 (691)
T ss_pred cEEEEecCCe--EEEEecchhh
Confidence 8888888887 9999995443
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=273.82 Aligned_cols=283 Identities=18% Similarity=0.312 Sum_probs=248.6
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
-...|..+.|.|+|+.|++|+..|.+.+|+..+- . ....++.|...|.++
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-n-----------------------------FEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-N-----------------------------FETILQAHDSPVRTM 144 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-e-----------------------------HHHHhhhhcccceeE
Confidence 3458999999999999999999999999997321 1 124567899999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
.|+++|.++++|+.+|.|++|+...........+. ..|.+++|||+...+++++.||.|+|||....+..+.+.+|.
T Consensus 145 ~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg-- 222 (464)
T KOG0284|consen 145 KWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG-- 222 (464)
T ss_pred EEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC--
Confidence 99999999999999999999998877766555554 899999999999999999999999999999988888888887
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
-.|.+++|+|...+|++++.|+.|++||.+++.++.++... ...|..+.|+|++++|++++
T Consensus 223 --------wdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~H----------KntVl~~~f~~n~N~Llt~s- 283 (464)
T KOG0284|consen 223 --------WDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGH----------KNTVLAVKFNPNGNWLLTGS- 283 (464)
T ss_pred --------CCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhc----------cceEEEEEEcCCCCeeEEcc-
Confidence 67899999999999999999999999999999988776543 77899999999999999999
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.|..++++|+++-+.++.+ ++| ...+++++|+| ...+|.+|+.||.|..|.+...+.+..+
T Consensus 284 --------kD~~~kv~DiR~mkEl~~~-----r~H-kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i---- 345 (464)
T KOG0284|consen 284 --------KDQSCKVFDIRTMKELFTY-----RGH-KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI---- 345 (464)
T ss_pred --------CCceEEEEehhHhHHHHHh-----hcc-hhhheeeccccccccceeeccCCCceEEEeccccccccCC----
Confidence 8999999999976665554 689 99999999999 5668889999999999999855554444
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
..+|...|.+++|+|=|.+|++|+ |.++++|.-.
T Consensus 346 ------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 ------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ------CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 357999999999999999999999 9999999754
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=268.85 Aligned_cols=293 Identities=21% Similarity=0.306 Sum_probs=238.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+++..|.+.|.-+.||++|++||+++.|.+..+|.+.....+ +..+++.+|..
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~---------------------------kl~~tlvgh~~ 270 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF---------------------------KLKKTLVGHSQ 270 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce---------------------------eeeeeeecccC
Confidence 677899999999999999999999999999999997554433 35688999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+|..+.||||.++|++++.+..+.+||+.+|.......+ ...+.+++|.|||..+++|+.|+.+..||++ |......
T Consensus 271 ~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W 349 (519)
T KOG0293|consen 271 PVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNW 349 (519)
T ss_pred ceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcc
Confidence 999999999999999999999999999999998765544 4789999999999999999999999999998 4555555
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
++... ..|.++++++||+++++.+.|..|++|+..+......+.. ..+++++.+|.|+++
T Consensus 350 ~gvr~---------~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise-----------~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 350 EGVRD---------PKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE-----------EQPITSFSISKDGKL 409 (519)
T ss_pred ccccc---------ceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc-----------cCceeEEEEcCCCcE
Confidence 55442 4689999999999999999999999999877544432222 456788888888887
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
+.+.- .+..+.+||++....+... .|| . .+.+++-.+..|
T Consensus 410 ~LvnL---------~~qei~LWDl~e~~lv~kY-----~Gh-k----------q~~fiIrSCFgg--------------- 449 (519)
T KOG0293|consen 410 ALVNL---------QDQEIHLWDLEENKLVRKY-----FGH-K----------QGHFIIRSCFGG--------------- 449 (519)
T ss_pred EEEEc---------ccCeeEEeecchhhHHHHh-----hcc-c----------ccceEEEeccCC---------------
Confidence 77776 6677888888755444332 344 1 233333222111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-CCCEEEEEEcC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG-SSEYLVATSWG 670 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d 670 (762)
.+..++|+|+ |+.|+||+..+|+++.++.||...|++++|+| |..++|+||+|
T Consensus 450 -------------------------~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDD 504 (519)
T KOG0293|consen 450 -------------------------GNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDD 504 (519)
T ss_pred -------------------------CCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCC
Confidence 2557999999 99999999999999999999999999999999 67889999999
Q ss_pred CCCeEEEEECCC
Q 040987 671 SKPQLSVWNMSK 682 (762)
Q Consensus 671 ~~~~v~vwd~~~ 682 (762)
|+ |+||....
T Consensus 505 gt--IRIWg~~~ 514 (519)
T KOG0293|consen 505 GT--IRIWGPSD 514 (519)
T ss_pred Ce--EEEecCCc
Confidence 99 99998764
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=253.35 Aligned_cols=289 Identities=15% Similarity=0.239 Sum_probs=249.3
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.++..+.+|.+.|+.+.|+|+|..|++++.|..|.+|++..... ..+..|.+.|..+.|.+|++.+++++.|.+++.|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 45667889999999999999999999999999999999765443 3466899999999999999999999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+++|+.++.+++|. +-+.++.-+.-|. ++.+++.|+++++||+++...+..+.. ...
T Consensus 118 D~~tG~~~rk~k~h~----------~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-----------kyq 176 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHT----------SFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-----------KYQ 176 (338)
T ss_pred ecccceeeehhcccc----------ceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-----------cee
Confidence 999999999999988 6677777444443 567788999999999998877666543 566
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
++++.|..++..+.+|+ -|+.|++||++.+...+.+ .|| ...|+.+..+|+|.++.+-+.|.+++
T Consensus 177 ltAv~f~d~s~qv~sgg---------Idn~ikvWd~r~~d~~~~l-----sGh-~DtIt~lsls~~gs~llsnsMd~tvr 241 (338)
T KOG0265|consen 177 LTAVGFKDTSDQVISGG---------IDNDIKVWDLRKNDGLYTL-----SGH-ADTITGLSLSRYGSFLLSNSMDNTVR 241 (338)
T ss_pred EEEEEecccccceeecc---------ccCceeeeccccCcceEEe-----ecc-cCceeeEEeccCCCccccccccceEE
Confidence 99999999999999998 7899999999999888776 689 99999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccC----CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYK----KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNM 655 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~ 655 (762)
+||++....... |.....+| ......++|||+++.+..|+ |..+++||..+...+..+.||.+.|.++
T Consensus 242 vwd~rp~~p~~R-------~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~ 314 (338)
T KOG0265|consen 242 VWDVRPFAPSQR-------CVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEV 314 (338)
T ss_pred EEEecccCCCCc-------eEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEe
Confidence 999976543222 22333333 23445789999999999998 9999999999999999999999999999
Q ss_pred EEeCCCCEEEEEEcCCCCeEEE
Q 040987 656 SFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 656 ~~s~dg~~l~s~~~d~~~~v~v 677 (762)
.|+|...+|.+++.|++ |++
T Consensus 315 ~Fhp~e~iils~~sdk~--i~l 334 (338)
T KOG0265|consen 315 DFHPTEPIILSCSSDKT--IYL 334 (338)
T ss_pred eecCCCcEEEEeccCce--eEe
Confidence 99999999999999998 765
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=291.46 Aligned_cols=281 Identities=13% Similarity=0.221 Sum_probs=240.4
Q ss_pred EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCC
Q 040987 106 QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP 185 (762)
Q Consensus 106 ~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (762)
+..++..-...++|..|++|+ .+||-|..|..|++|.+... .++.++....+..+
T Consensus 370 c~YT~~nt~~~v~ca~fSdds-------smlA~Gf~dS~i~~~Sl~p~-kl~~lk~~~~l~~~----------------- 424 (707)
T KOG0263|consen 370 CMYTFHNTYQGVTCAEFSDDS-------SMLACGFVDSSVRVWSLTPK-KLKKLKDASDLSNI----------------- 424 (707)
T ss_pred EEEEEEEcCCcceeEeecCCc-------chhhccccccEEEEEecchh-hhccccchhhhccc-----------------
Confidence 445555556779999999999 78899999999999999864 33334332211111
Q ss_pred ceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEcc
Q 040987 186 KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVP 264 (762)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~ 264 (762)
-+.+.|-.+.+.|..++... ..+.+|.++|....|+||.++|+++ .|+++++|.+.
T Consensus 425 ----------------------d~~sad~~~~~~D~~~~~~~-~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~ 481 (707)
T KOG0263|consen 425 ----------------------DTESADVDVDMLDDDSSGTS-RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLD 481 (707)
T ss_pred ----------------------cccccchhhhhccccCCcee-EEeecCCCceeeeeecccccceeeccCCcceeeeecc
Confidence 12344445666666666555 5689999999999999999999955 78999999999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+..+. -...+|..+|..+.|+|.|-++|+++.|++-++|..... .
T Consensus 482 t~s~~-----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~------------------------------~ 526 (707)
T KOG0263|consen 482 TWSCL-----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN------------------------------K 526 (707)
T ss_pred cceeE-----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC------------------------------C
Confidence 99876 667799999999999999999999999999999997554 4
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+.+.+.+|...|.|+.|+|+..++++|+.|.++++||+.+|..+ .+.+|.++|.+++|||+|++|++|+.|+.|.+||+
T Consensus 527 PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl 606 (707)
T KOG0263|consen 527 PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDL 606 (707)
T ss_pred chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEc
Confidence 56889999999999999999999999999999999999999885 46789999999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
.++..+..+.+|. +.|.++.|+.||..||+++.|++|++||+....
T Consensus 607 ~~~~~v~~l~~Ht----------~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 607 ANGSLVKQLKGHT----------GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCCcchhhhhccc----------CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 9999999999997 899999999999999999999999999987543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=264.84 Aligned_cols=288 Identities=18% Similarity=0.281 Sum_probs=260.7
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+...+.+|...|+.+.|+|+-..++++++|++|++||..+++.. .+.+|...+..++|+..|+++++++.|-.+++||.
T Consensus 100 l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 100 LVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred chhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeH
Confidence 45677889999999999999999999999999999999999985 57888889999999999999999999999999999
Q ss_pred CC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 424 PS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 424 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
.+ .++++.+.+|. ..|.+++|-|.|.++++++.|.+|+.|++.++-.+..+... ...|.
T Consensus 180 ~~~~~c~ks~~gh~----------h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h----------~ewvr 239 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHE----------HGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH----------SEWVR 239 (406)
T ss_pred HHHHHHHHHhcCcc----------cceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc----------hHhEE
Confidence 87 66777777777 78899999999999999999999999999999888877554 66899
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---------------C
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---------------R 567 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---------------~ 567 (762)
.++.+.||..+|+++ .|.++++|-..+.++...+ ..| .-.|.+++|-|. +
T Consensus 240 ~v~v~~DGti~As~s---------~dqtl~vW~~~t~~~k~~l-----R~h-Eh~vEci~wap~~~~~~i~~at~~~~~~ 304 (406)
T KOG0295|consen 240 MVRVNQDGTIIASCS---------NDQTLRVWVVATKQCKAEL-----REH-EHPVECIAWAPESSYPSISEATGSTNGG 304 (406)
T ss_pred EEEecCCeeEEEecC---------CCceEEEEEeccchhhhhh-----hcc-ccceEEEEecccccCcchhhccCCCCCc
Confidence 999999999999999 8999999999999776665 467 779999999764 3
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
.++++++.|++|++||+.++.++..+ .+|..+|..++|+|.|+||+++. |+++++||++++++...+.
T Consensus 305 ~~l~s~SrDktIk~wdv~tg~cL~tL-----------~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 305 QVLGSGSRDKTIKIWDVSTGMCLFTL-----------VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred cEEEeecccceEEEEeccCCeEEEEE-----------ecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 58999999999999999999766554 58999999999999999999997 9999999999999999999
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.|..-++++.|..+-.++++|+-|.+ +++|.-
T Consensus 374 ah~hfvt~lDfh~~~p~VvTGsVdqt--~KvwEc 405 (406)
T KOG0295|consen 374 AHEHFVTSLDFHKTAPYVVTGSVDQT--VKVWEC 405 (406)
T ss_pred CCcceeEEEecCCCCceEEeccccce--eeeeec
Confidence 99999999999999999999999998 999963
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=262.66 Aligned_cols=303 Identities=19% Similarity=0.301 Sum_probs=260.0
Q ss_pred EecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|..+-.....+.||.+.|.| +++.|-.+++++|+ |++|.|||+++|++..++.||-..|..+++|+-- .||
T Consensus 137 WHapwKl~rVi~gHlgWVr~-vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-------pYl 208 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRS-VAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-------PYL 208 (460)
T ss_pred ccCcceehhhhhhccceEEE-EeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-------ceE
Confidence 44444555678999999998 99999999999999 8999999999999999999999999999999999 799
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|+.|+.||++..+.+
T Consensus 209 Fs~gedk~VKCwDLe~nkvI------------------------------------------------------------ 228 (460)
T KOG0285|consen 209 FSAGEDKQVKCWDLEYNKVI------------------------------------------------------------ 228 (460)
T ss_pred EEecCCCeeEEEechhhhhH------------------------------------------------------------
Confidence 99999999999998764433
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIV 296 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 296 (762)
+-..+|-..|.|++.+|.-..|
T Consensus 229 ----------------------------------------------------------R~YhGHlS~V~~L~lhPTldvl 250 (460)
T KOG0285|consen 229 ----------------------------------------------------------RHYHGHLSGVYCLDLHPTLDVL 250 (460)
T ss_pred ----------------------------------------------------------HHhccccceeEEEeccccceeE
Confidence 3345788899999999999999
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++|+.|.+++|||+++.. .+..+.||...|..+.+.|-...+++++.|++
T Consensus 251 ~t~grDst~RvWDiRtr~------------------------------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~t 300 (460)
T KOG0285|consen 251 VTGGRDSTIRVWDIRTRA------------------------------SVHVLSGHTNPVASVMCQPTDPQVITGSHDST 300 (460)
T ss_pred EecCCcceEEEeeecccc------------------------------eEEEecCCCCcceeEEeecCCCceEEecCCce
Confidence 999999999999998774 45789999999999999998889999999999
Q ss_pred EEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 377 LVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 377 i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|++||+..|+.. .+..|...+.+++.+|....+++++.| .|+-|++..|..+..+.+|. ..+.+++.+
T Consensus 301 vrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~----------~iintl~~n 369 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN----------AIINTLSVN 369 (460)
T ss_pred EEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc----------ceeeeeeec
Confidence 999999999875 577888899999999999999988655 79999999999998898887 788999998
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
.|+ .+++|+++|.+.+||.+++......+...+.- .-.....|.+.+|...|..|+++. .|.+|++|.
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpG--Sl~sEagI~as~fDktg~rlit~e---------adKtIk~~k 437 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPG--SLESEAGIFASCFDKTGSRLITGE---------ADKTIKMYK 437 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcCcccccccccccCC--ccccccceeEEeecccCceEEecc---------CCcceEEEe
Confidence 886 68889999999999999987655543221110 001156789999999999999998 889999998
Q ss_pred ecCC
Q 040987 536 SGTQ 539 (762)
Q Consensus 536 ~~~~ 539 (762)
-+..
T Consensus 438 eDe~ 441 (460)
T KOG0285|consen 438 EDEH 441 (460)
T ss_pred cccc
Confidence 7654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=270.03 Aligned_cols=281 Identities=18% Similarity=0.277 Sum_probs=244.8
Q ss_pred CCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
...|..+.|.|+|+.|+++ ..|.+.+|+...-... .++..|...|.++.|++++.++++|+.+|.|++|+..-+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE-----tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE-----TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH-----HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh
Confidence 4578999999999998855 7899999999776665 778899999999999999999999999999999986432
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccc-cceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLP 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~ 391 (762)
.++.++.|. ..|++++|+|+...+++++.||+|+|||....+. ..+.
T Consensus 171 -------------------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 171 -------------------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred -------------------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 234455554 8999999999999999999999999999988776 4568
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEE
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 471 (762)
+|+-.|.++.|+|...++++++.|+.|++||.+++.++.++.+|+ ..|..+.|+|++++|++++.|..++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HK----------ntVl~~~f~~n~N~Llt~skD~~~k 289 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHK----------NTVLAVKFNPNGNWLLTGSKDQSCK 289 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhcc----------ceEEEEEEcCCCCeeEEccCCceEE
Confidence 888999999999999999999999999999999999999999988 8999999999999999999999999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
+||+++.+.+..+.. | ...+++++|+|-. .+|.+++ .|+.|..|.+...+.+..+.
T Consensus 290 v~DiR~mkEl~~~r~----H------kkdv~~~~WhP~~~~lftsgg---------~Dgsvvh~~v~~~~p~~~i~---- 346 (464)
T KOG0284|consen 290 VFDIRTMKELFTYRG----H------KKDVTSLTWHPLNESLFTSGG---------SDGSVVHWVVGLEEPLGEIP---- 346 (464)
T ss_pred EEehhHhHHHHHhhc----c------hhhheeeccccccccceeecc---------CCCceEEEeccccccccCCC----
Confidence 999997666555432 2 6779999999954 4666666 89999999999666555543
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
.+| ...|.+++|+|=|.+|++|+.|.++++|.-.
T Consensus 347 ~AH-d~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 347 PAH-DGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ccc-ccceeeeeccccceeEeecCCCcceeeeccC
Confidence 578 9999999999999999999999999999754
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=292.26 Aligned_cols=283 Identities=22% Similarity=0.295 Sum_probs=239.9
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..++..-...++|..|++|+..||.|-.|..|++|.+...+...+..... ...+=+.+.|-.+.+.|...
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~----------l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASD----------LSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhh----------hccccccccchhhhhccccC
Confidence 34444455678999999999999999999999999998665443332211 11122233444567777777
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
....+++.+|. ++|....|+|+.++|+++++|+++++|.+.+...+.... +| ..+|.++.
T Consensus 441 ~~~~~~L~GH~----------GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~----GH------~~PVwdV~ 500 (707)
T KOG0263|consen 441 SGTSRTLYGHS----------GPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK----GH------LAPVWDVQ 500 (707)
T ss_pred CceeEEeecCC----------CceeeeeecccccceeeccCCcceeeeecccceeEEEec----CC------CcceeeEE
Confidence 77788899988 899999999999999999999999999999876554433 33 78899999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|.|-|+|+++ .|++-++|........+.+ .+| .+.|.|+.|+|+..|+++||.|.++|+||+.
T Consensus 501 F~P~GyYFatas---------~D~tArLWs~d~~~PlRif-----agh-lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~ 565 (707)
T KOG0263|consen 501 FAPRGYYFATAS---------HDQTARLWSTDHNKPLRIF-----AGH-LSDVDCVSFHPNSNYVATGSSDRTVRLWDVS 565 (707)
T ss_pred ecCCceEEEecC---------CCceeeeeecccCCchhhh-----ccc-ccccceEEECCcccccccCCCCceEEEEEcC
Confidence 999999999999 8999999999987665544 789 9999999999999999999999999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
+|..++.+ .+|.++|++++|||+|++||+|+ |+.|.+||+.+++++..+.+|.+.|.++.||.||..|
T Consensus 566 ~G~~VRiF-----------~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 566 TGNSVRIF-----------TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred CCcEEEEe-----------cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEE
Confidence 99877665 58999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEECCCCcee
Q 040987 665 VATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
|++|.|.. |++||+..-...
T Consensus 635 asgg~Dns--V~lWD~~~~~~~ 654 (707)
T KOG0263|consen 635 ASGGADNS--VRLWDLTKVIEL 654 (707)
T ss_pred EecCCCCe--EEEEEchhhccc
Confidence 99999998 999998764433
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=269.51 Aligned_cols=490 Identities=13% Similarity=0.185 Sum_probs=347.8
Q ss_pred eeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCc
Q 040987 108 SSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 108 ~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
..|+..+..|..++|+|.. .++.++-..|.|++||.+-+.++..|..|. ||..+.|.. ..|
T Consensus 3 tkfEskSsRvKglsFHP~r-------PwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~----------~qp- 64 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKR-------PWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHP----------TQP- 64 (1202)
T ss_pred chhhcccccccceecCCCC-------CEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecC----------CCC-
Confidence 3466678899999999999 588899999999999999999999999998 999998721 111
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~ 265 (762)
+ | ++|+.|-.|++|+.++.+++ -.+.+|-..|+.+.|++.-.+|.+ ++|.+|+||+..+
T Consensus 65 -l-F-----------------VSGGDDykIkVWnYk~rrcl-ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs 124 (1202)
T KOG0292|consen 65 -L-F-----------------VSGGDDYKIKVWNYKTRRCL-FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS 124 (1202)
T ss_pred -e-E-----------------EecCCccEEEEEecccceeh-hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC
Confidence 1 1 77999999999999999999 788999999999999999999985 5789999999999
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
+++. ..+++|...|.|..|+|....++++|-|.+|+|||+.+-+.-....... ...+........+....+.-.
T Consensus 125 r~~i-----avltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~-e~~~~~~~~~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 125 RKCI-----AVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSL-EDQMRGQQGNSDLFGQTDAVV 198 (1202)
T ss_pred CceE-----EEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCc-hhhhhccccchhhcCCcCeee
Confidence 9987 8999999999999999999999999999999999986643221111100 000000011112223334455
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
...+.||...|+.++|+|.-..|++|++|..|++|.....+. -...+|.++|.++-|+|...++++.++|+.|++||
T Consensus 199 K~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 678899999999999999999999999999999999876543 35778999999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+...+.++++.... +..+.++-+|..++++.| .|+-+.+|.++...+ .
T Consensus 279 m~kRt~v~tfrren----------dRFW~laahP~lNLfAAg-HDsGm~VFkleRErp--------------------a- 326 (1202)
T KOG0292|consen 279 MTKRTSVQTFRREN----------DRFWILAAHPELNLFAAG-HDSGMIVFKLERERP--------------------A- 326 (1202)
T ss_pred cccccceeeeeccC----------CeEEEEEecCCcceeeee-cCCceEEEEEcccCc--------------------e-
Confidence 99999999987655 678999999999877776 555577777753321 1
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eC-CCcEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SY-GGDFK 580 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~-dg~i~ 580 (762)
.+. +++.|... .+..|+.+|+.+.+.....+.. ..+....+..++.++|..+.+..+ .. .+...
T Consensus 327 -~~v--~~n~LfYv----------kd~~i~~~d~~t~~d~~v~~lr-~~g~~~~~~~smsYNpae~~vlics~~~n~~y~ 392 (1202)
T KOG0292|consen 327 -YAV--NGNGLFYV----------KDRFIRSYDLRTQKDTAVASLR-RPGTLWQPPRSLSYNPAENAVLICSNLDNGEYE 392 (1202)
T ss_pred -EEE--cCCEEEEE----------ccceEEeeeccccccceeEecc-CCCcccCCcceeeeccccCeEEEEeccCCCeEE
Confidence 122 23333333 5679999999986554333221 111113578889999976654444 32 34445
Q ss_pred EEEcccccccccc-----c----CCceeeeee---cc--cC-------CC----------CeEEEEEcCCCcEEEEEcCC
Q 040987 581 VWICNDELQQKDL-----Q----SSGWSCHAV---GS--YK-------KK----------AMTAAAFSADGSVLAVAAET 629 (762)
Q Consensus 581 iwd~~~~~~~~~~-----~----~~~~~~~~~---~~--~~-------~~----------~i~~~~~s~dg~~la~~~d~ 629 (762)
++.+......... + ...|..... +. .+ .. .+..+-+...|.+| ..+..
T Consensus 393 L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~ll-l~~~~ 471 (1202)
T KOG0292|consen 393 LVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLL-LRSPD 471 (1202)
T ss_pred EEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEE-EEcCC
Confidence 5554332111100 0 001110000 00 00 00 11122222233222 22346
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.|.+||++..+.+..+. ...+.-+.||+|..+++--+... |.+.+.+ .+++.++.....
T Consensus 472 ~v~lfdvQq~~~~~si~--~s~vkyvvws~dm~~vAll~Kh~---i~i~~kk-L~l~~sihEtir 530 (1202)
T KOG0292|consen 472 SVTLFDVQQKKKVGSIK--VSKVKYVVWSNDMSRVALLSKHT---ITIADKK-LELLCSIHETIR 530 (1202)
T ss_pred eEEEEEeecceEEEEEe--cCceeEEEEcCccchhhhcccce---EEEEecc-hhheecchheeE
Confidence 78899999888888885 56799999999999998887754 8888743 445555544444
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=258.77 Aligned_cols=293 Identities=15% Similarity=0.212 Sum_probs=243.9
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+..|...|+-+.||++|+|||++ .|.+..+|++...... .+...+.+|..+|..+.||||.++|++++.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~--kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF--KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce--eeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 4667799999999999999999955 7899999998766553 566788899999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
||+.++..+.. .-.+|...+.+++|.|||..+++|+.|+++..||++....
T Consensus 296 wDv~tgd~~~~-----------------------------y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~ 346 (519)
T KOG0293|consen 296 WDVDTGDLRHL-----------------------------YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNIL 346 (519)
T ss_pred ccCCcchhhhh-----------------------------cccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchh
Confidence 99988754321 1123457899999999999999999999999999987665
Q ss_pred eccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 388 KFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 388 ~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
....... ..|.+++.++||+++++.+.|..|++|+..+......+..+ ..++++.+|.|++++++.-.
T Consensus 347 ~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-----------~~its~~iS~d~k~~LvnL~ 415 (519)
T KOG0293|consen 347 GNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-----------QPITSFSISKDGKLALVNLQ 415 (519)
T ss_pred hcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-----------CceeEEEEcCCCcEEEEEcc
Confidence 3333332 46999999999999999999999999999876555444443 58899999999999999999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
+..+++||++....+.......+ ...+-.-+|-- +..++++|+ +|+.|+||+..+++.+..+
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq--------~~fiIrSCFgg~~~~fiaSGS---------ED~kvyIWhr~sgkll~~L 478 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQ--------GHFIIRSCFGGGNDKFIASGS---------EDSKVYIWHRISGKLLAVL 478 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccc--------cceEEEeccCCCCcceEEecC---------CCceEEEEEccCCceeEee
Confidence 99999999997776666555444 33455556654 458899998 9999999999999988877
Q ss_pred EEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEccc
Q 040987 546 STIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|| ...|++++|+|. -.++|++++||+|+||-...
T Consensus 479 -----sGH-s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 479 -----SGH-SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred -----cCC-cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 689 999999999994 56899999999999998753
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=239.55 Aligned_cols=293 Identities=17% Similarity=0.212 Sum_probs=243.1
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG 143 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~ 143 (762)
.+.++||+.+++. +.++.+|.+|.+++ |.++.||-.-+|+.+.++.||.+.|+|++..-+. ++|+||+.|.
T Consensus 3 pi~l~GHERplTq-iKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-------~~liTGSAD~ 74 (327)
T KOG0643|consen 3 PILLQGHERPLTQ-IKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-------KHLITGSADQ 74 (327)
T ss_pred ccccccCccccce-EEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-------ceeeeccccc
Confidence 4678999999997 99999999999999 8999999998999999999999999999999999 7888999999
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
++++||+.+|+++..++..
T Consensus 75 t~kLWDv~tGk~la~~k~~------------------------------------------------------------- 93 (327)
T KOG0643|consen 75 TAKLWDVETGKQLATWKTN------------------------------------------------------------- 93 (327)
T ss_pred eeEEEEcCCCcEEEEeecC-------------------------------------------------------------
Confidence 9999999999999887643
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEEe------CCeEEEEEccCchhh--hheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIRK------QRKLLIWKVPDVEAE--RVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~------~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
..|..+.|+++|++++++. .+.|.++|++..... ...+......+...++.+-|+|-+++
T Consensus 94 ------------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ 161 (327)
T KOG0643|consen 94 ------------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET 161 (327)
T ss_pred ------------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE
Confidence 3455668889999887653 467999998844311 11222344466789999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
|++|..||.|.+||+++++.+. ..-+.|...|+.+.+++|..++++++.|.
T Consensus 162 ii~Ghe~G~is~~da~~g~~~v-----------------------------~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 162 IIAGHEDGSISIYDARTGKELV-----------------------------DSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred EEEecCCCcEEEEEcccCceee-----------------------------echhhhccccccccccCCcceEEecccCc
Confidence 9999999999999998876443 45566888999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcE--------------EEEEcCCceEEEEEccCCCCCCC
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQV--------------HLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i--------------~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+-++||..+-+.+.......++.+.+++|-...++.++..... +.|++-..+.+..+++|-
T Consensus 213 takl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF----- 287 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF----- 287 (327)
T ss_pred cceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc-----
Confidence 9999999999988877888899999999988777766543221 222222234556677777
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
++|.+++|+|+|+..++|++||.|++.-...
T Consensus 288 -----GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 -----GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 8899999999999999999999999986643
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=243.28 Aligned_cols=294 Identities=13% Similarity=0.141 Sum_probs=249.7
Q ss_pred eeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|.+.|..+.|+|+|..+|+ |.|..|.+|+...... ....+.+|.+.|..+.|.+|++.+++++.|.+|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----ceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 356789999999999999999995 5899999999765442 22456699999999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~ 386 (762)
||+++++ .++.+++|.+-|+.+.-+.-| .++.+++.|+++++||+++.+
T Consensus 117 wD~~tG~------------------------------~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 117 WDAETGK------------------------------RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred Eecccce------------------------------eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc
Confidence 9998885 446888999999988854444 456788899999999999998
Q ss_pred eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 387 KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
..........++++.|..++..+.+|+-|+.|++||++.......+.||. ..|+.+..+|+|.++.+-+-
T Consensus 167 ~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~----------DtIt~lsls~~gs~llsnsM 236 (338)
T KOG0265|consen 167 AIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA----------DTITGLSLSRYGSFLLSNSM 236 (338)
T ss_pred hhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc----------CceeeEEeccCCCccccccc
Confidence 88888888899999999999999999999999999999999999999998 78899999999999999999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
|.++++||++....-.+......++.. .........+|+|+++.+.+++ .|..+++||......++.+
T Consensus 237 d~tvrvwd~rp~~p~~R~v~if~g~~h--nfeknlL~cswsp~~~~i~ags---------~dr~vyvwd~~~r~~lykl- 304 (338)
T KOG0265|consen 237 DNTVRVWDVRPFAPSQRCVKIFQGHIH--NFEKNLLKCSWSPNGTKITAGS---------ADRFVYVWDTTSRRILYKL- 304 (338)
T ss_pred cceEEEEEecccCCCCceEEEeecchh--hhhhhcceeeccCCCCcccccc---------ccceEEEeecccccEEEEc-
Confidence 999999999765443332211111110 0033356779999999999999 8899999999988888776
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
.|| .+.|+++.|+|...+|.+++.|++|++=+
T Consensus 305 ----pGh-~gsvn~~~Fhp~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 305 ----PGH-YGSVNEVDFHPTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ----CCc-ceeEEEeeecCCCcEEEEeccCceeEeec
Confidence 689 99999999999999999999999988743
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=287.50 Aligned_cols=287 Identities=22% Similarity=0.307 Sum_probs=245.7
Q ss_pred eeecC-cccccCCceeecCCCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 67 MIRGG-RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 67 ~~~~h-~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
.+.+| ...|.+ +.||+||++|++++ ++.+++|+..+++ .++.+.+|...|.+++|+|++ .++++++.|
T Consensus 153 ~~~~~~~~sv~~-~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-------~~l~s~s~D 224 (456)
T KOG0266|consen 153 TLAGHECPSVTC-VDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-------SYLLSGSDD 224 (456)
T ss_pred eecccccCceEE-EEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-------cEEEEecCC
Confidence 33444 778887 99999999999998 8999999998888 888899999999999999999 799999999
Q ss_pred CeEEEEeC-CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDF-SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|+|||+ ..+.++++++
T Consensus 225 ~tiriwd~~~~~~~~~~l~------------------------------------------------------------- 243 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLK------------------------------------------------------------- 243 (456)
T ss_pred ceEEEeeccCCCeEEEEec-------------------------------------------------------------
Confidence 99999999 4456666554
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
+|...|++++|+|+|++++++ .|++|+|||+.++++. ..+.+|.+.|.+++|++++++|++++
T Consensus 244 -----------gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~-----~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 244 -----------GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECV-----RKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred -----------CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEE-----EeeeccCCceEEEEECCCCCEEEEcC
Confidence 467778899999999888855 7999999999998766 88899999999999999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc--ceeEEEEecCCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS--EVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
.|+.|++||+.++... +...+.++.. .++++.|+|++++++++..|++++
T Consensus 308 ~d~~i~vwd~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~ 359 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKL----------------------------CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLK 359 (456)
T ss_pred CCccEEEEECCCCcee----------------------------eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEE
Confidence 9999999999877521 1234444444 499999999999999999999999
Q ss_pred EEecCCCcee-ccCCCCC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC-CCCCCCCCcccCceeeEE
Q 040987 379 VWQLDTGKKK-FLPRIGS---PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI-KLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~ 453 (762)
+||+..+... ....|.. .+.+...++.++++++++.|+.|.+|+..++..+..+.+| . ..+..+.
T Consensus 360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~----------~~~~~~~ 429 (456)
T KOG0266|consen 360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSK----------AAVSDLS 429 (456)
T ss_pred EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCC----------Cceeccc
Confidence 9999988764 3444444 3445556889999999999999999999999999999998 4 6789999
Q ss_pred EeCCCCEEEEee--cCceEEEEEcC
Q 040987 454 FNHDGGLVALRA--ENYCIHFYSLL 476 (762)
Q Consensus 454 ~s~~~~~l~~~~--~dg~i~i~d~~ 476 (762)
++|..+++++++ .|+.+++|...
T Consensus 430 ~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 430 SHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred cCCCcCeeeecCcCCCceEEEecCC
Confidence 999999999998 78899999753
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=260.33 Aligned_cols=270 Identities=17% Similarity=0.243 Sum_probs=230.3
Q ss_pred ccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~ 151 (762)
..|.| .--|...+++|. |++|+|||.++-.+++.|.||++.|.|+.|.. +.++|||.|.+|+|||++
T Consensus 198 kgVYC---lQYDD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---------rviisGSSDsTvrvWDv~ 265 (499)
T KOG0281|consen 198 KGVYC---LQYDDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---------RVIVSGSSDSTVRVWDVN 265 (499)
T ss_pred CceEE---EEecchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---------eEEEecCCCceEEEEecc
Confidence 44555 445667899999 89999999999999999999999999999865 678899999999999999
Q ss_pred CcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc--c
Q 040987 152 VPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA--G 228 (762)
Q Consensus 152 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~--~ 228 (762)
+|++++++-.|. .|..+.|.+ +.. ++++.|.++.+||+.....+ +
T Consensus 266 tge~l~tlihHceaVLhlrf~n---------g~m-----------------------vtcSkDrsiaVWdm~sps~it~r 313 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFSN---------GYM-----------------------VTCSKDRSIAVWDMASPTDITLR 313 (499)
T ss_pred CCchhhHHhhhcceeEEEEEeC---------CEE-----------------------EEecCCceeEEEeccCchHHHHH
Confidence 999999998887 777776621 111 67899999999999876644 5
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|...|+.+.|+. ++++ +++|.+|++|+..+.++. +.+.+|..+|-|+.+ .++++++|+.|.+|++
T Consensus 314 rVLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st~efv-----Rtl~gHkRGIAClQY--r~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTSTCEFV-----RTLNGHKRGIACLQY--RDRLVVSGSSDNTIRL 384 (499)
T ss_pred HHHhhhhhheeeecccc--ceEEEecCCceEEEEeccceeee-----hhhhcccccceehhc--cCeEEEecCCCceEEE
Confidence 67889999999999964 5887 558999999999999987 888999999999988 6899999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
||++.+ .+++.++||..-|.++.| |.+.+++|+.||+|++||+..+..
T Consensus 385 wdi~~G------------------------------~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 385 WDIECG------------------------------ACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALD 432 (499)
T ss_pred Eecccc------------------------------HHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccC
Confidence 999777 567899999999999999 567999999999999999987654
Q ss_pred e----------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 388 K----------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 388 ~----------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
. .+..|.+.|..+.| |...+++++.|.+|.|||..++..-
T Consensus 433 pra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 433 PRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred CcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcCCCCcc
Confidence 2 34567788999988 4578999999999999999876443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=270.31 Aligned_cols=283 Identities=24% Similarity=0.389 Sum_probs=246.9
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+.+|.+.|.+ ++|+|++++|++++ +|.|.+||+.+++....+.+|...+..+.|+|++ .++++++.|+.|
T Consensus 4 ~~~~h~~~i~~-~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~~~~i 75 (289)
T cd00200 4 TLKGHTGGVTC-VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-------TYLASGSSDKTI 75 (289)
T ss_pred HhcccCCCEEE-EEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-------CEEEEEcCCCeE
Confidence 46799999997 99999999999999 7999999999999999999999999999999999 688899999999
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..+.
T Consensus 76 ~i~~~~~~~~~~~~~----------------------------------------------------------------- 90 (289)
T cd00200 76 RLWDLETGECVRTLT----------------------------------------------------------------- 90 (289)
T ss_pred EEEEcCcccceEEEe-----------------------------------------------------------------
Confidence 999998775544332
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.|...+.++.|+|++++++++. ++.+.+||+.+++.. .....|...+.+++|+|+++++++++.++.
T Consensus 91 -------~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~ 158 (289)
T cd00200 91 -------GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158 (289)
T ss_pred -------ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCc
Confidence 2445678889999999998776 999999999976643 445578889999999999999998888999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|++||+..++ ....+..|...+.++.|+|+++.+++++.++.+++||+.+
T Consensus 159 i~i~d~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 159 IKLWDLRTGK------------------------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred EEEEEccccc------------------------------cceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCC
Confidence 9999986543 3356667888999999999999999999999999999998
Q ss_pred CceeccC-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 385 GKKKFLP-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 385 ~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
++..... .+...+.++.|+|++.++++++.++.+++|++.+++....+..+. ..+.+++|+|+++++++
T Consensus 209 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~ 278 (289)
T cd00200 209 GKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT----------NSVTSLAWSPDGKRLAS 278 (289)
T ss_pred CceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC----------CcEEEEEECCCCCEEEE
Confidence 8776544 677799999999998888888779999999999988888888665 68899999999999999
Q ss_pred eecCceEEEEE
Q 040987 464 RAENYCIHFYS 474 (762)
Q Consensus 464 ~~~dg~i~i~d 474 (762)
++.|+.+++|+
T Consensus 279 ~~~d~~i~iw~ 289 (289)
T cd00200 279 GSADGTIRIWD 289 (289)
T ss_pred ecCCCeEEecC
Confidence 99999999996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=268.04 Aligned_cols=294 Identities=16% Similarity=0.256 Sum_probs=251.2
Q ss_pred eeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.......+|...|.++.|.| .+.+|++++.|+.|+||++... ..+++++.
T Consensus 205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-----------------------------~~~lrtf~ 255 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-----------------------------RRCLRTFK 255 (503)
T ss_pred hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-----------------------------cceehhhh
Confidence 33466779999999999999 8999999999999999998652 35779999
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+|..+|.+++|+.+|..+++++.|+.|++||+++|++......+..++++.|.||+ +.+++|+.|+.|+.||+++++.+
T Consensus 256 gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 256 GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 99999999999999999999999999999999999999888888999999999998 88999999999999999999988
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+..|- +.|..+.|-++|+++++.++|+.+++|+...+-.+..+.... .....++..+|+
T Consensus 336 qeYd~hL----------g~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~---------~hsmP~~~~~P~ 396 (503)
T KOG0282|consen 336 QEYDRHL----------GAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPE---------MHTMPCLTLHPN 396 (503)
T ss_pred HHHHhhh----------hheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchh---------hccCcceecCCC
Confidence 8887776 889999999999999999999999999998776554433221 345678999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+++++.-+ .|+.|.+|.+...-....- ..+.+|. .+.-..+.|||||++|++|+.||.+.+||.++.+
T Consensus 397 ~~~~~aQs---------~dN~i~ifs~~~~~r~nkk--K~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k 465 (503)
T KOG0282|consen 397 GKWFAAQS---------MDNYIAIFSTVPPFRLNKK--KRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK 465 (503)
T ss_pred CCeehhhc---------cCceEEEEecccccccCHh--hhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh
Confidence 99999998 7899999986543222111 1235662 2445678999999999999999999999999988
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEe
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWD 635 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd 635 (762)
....++ .|...+..+.|+|.. ..+|+++ ||.|++|+
T Consensus 466 l~~~lk-----------ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 466 LVSKLK-----------AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hhhccc-----------cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 877763 688999999999965 4688888 99999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=268.41 Aligned_cols=285 Identities=24% Similarity=0.419 Sum_probs=249.0
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.+|...|.+++|+|++++|++++.++.+++|++.+++.. ....+...+..+.|+++++.+++++.++.+++|++.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 466789999999999999999999999999999999987653 4556777888999999999999999999999999998
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
++....+..+. ..+.++.|+++++++++++.++.+.+||+.+++....+. .| ...+.+++
T Consensus 83 ~~~~~~~~~~~----------~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~------~~~i~~~~ 142 (289)
T cd00200 83 GECVRTLTGHT----------SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----GH------TDWVNSVA 142 (289)
T ss_pred ccceEEEeccC----------CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec----cC------CCcEEEEE
Confidence 88888887665 688999999998888888889999999998766555443 12 56799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|+++++++++ .++.|++||+.+++....+ ..| ...+.++.|+|+++.+++++.|+.+++||+.
T Consensus 143 ~~~~~~~l~~~~---------~~~~i~i~d~~~~~~~~~~-----~~~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~ 207 (289)
T cd00200 143 FSPDGTFVASSS---------QDGTIKLWDLRTGKCVATL-----TGH-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207 (289)
T ss_pred EcCcCCEEEEEc---------CCCcEEEEEccccccceeE-----ecC-ccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence 999999999886 6899999999977766555 356 7789999999999999999999999999998
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
.++....+ ..|...+.+++|+|++.++++++ |+.|++||+.+++.+..+..|...|.+++|+|++++|
T Consensus 208 ~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 276 (289)
T cd00200 208 TGKCLGTL-----------RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRL 276 (289)
T ss_pred CCceecch-----------hhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEE
Confidence 86665544 24677999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEEEcCCCCeEEEEE
Q 040987 665 VATSWGSKPQLSVWN 679 (762)
Q Consensus 665 ~s~~~d~~~~v~vwd 679 (762)
++++.|+. |++|+
T Consensus 277 ~~~~~d~~--i~iw~ 289 (289)
T cd00200 277 ASGSADGT--IRIWD 289 (289)
T ss_pred EEecCCCe--EEecC
Confidence 99999998 99996
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=262.72 Aligned_cols=289 Identities=15% Similarity=0.193 Sum_probs=242.9
Q ss_pred CCcceeeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEccc-ceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 61 PAVNSKMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST-GLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 61 ~~~~~~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
+......+.||+..|++ +.|.| .+.+|++++ |+.|+||++-. +++++++.||..+|..++|+++|. -+.
T Consensus 203 Pkk~~~~~~gH~kgvsa-i~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~-------~fL 274 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSA-IQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGT-------SFL 274 (503)
T ss_pred cHhheeeccCCccccch-hhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCC-------eee
Confidence 44555677999999997 99999 899999999 89999999976 899999999999999999999994 455
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|+|.|+.|++||.++|+++..+...
T Consensus 275 S~sfD~~lKlwDtETG~~~~~f~~~------------------------------------------------------- 299 (503)
T KOG0282|consen 275 SASFDRFLKLWDTETGQVLSRFHLD------------------------------------------------------- 299 (503)
T ss_pred eeecceeeeeeccccceEEEEEecC-------------------------------------------------------
Confidence 9999999999999999999887632
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCC-CEE-EEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSG-KYF-GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l-a~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
..+.|+.|.||+ +.+ +++.|+.|+-||+.+++.. +....|-+.|..+.|-++|++
T Consensus 300 ------------------~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv-----qeYd~hLg~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 300 ------------------KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV-----QEYDRHLGAILDITFVDEGRR 356 (503)
T ss_pred ------------------CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH-----HHHHhhhhheeeeEEccCCce
Confidence 345677889988 444 4568999999999999977 677789999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
+++.+.|+.++||+....-.++ .....+.....++..+|++++++.-+.|.
T Consensus 357 FissSDdks~riWe~~~~v~ik-----------------------------~i~~~~~hsmP~~~~~P~~~~~~aQs~dN 407 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIK-----------------------------NIADPEMHTMPCLTLHPNGKWFAAQSMDN 407 (503)
T ss_pred EeeeccCccEEEEEcCCCccch-----------------------------hhcchhhccCcceecCCCCCeehhhccCc
Confidence 9999999999999986654332 11222333466889999999999999999
Q ss_pred eEEEEecCCCce----eccCCCC--CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 376 VLVVWQLDTGKK----KFLPRIG--SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 376 ~i~~wd~~~~~~----~~~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
.|.++.+...-. ..+.+|. +.-..+.|||||.+|++|..+|.+.+||.++-+++..++.|. +.+
T Consensus 408 ~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~----------~~c 477 (503)
T KOG0282|consen 408 YIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD----------QPC 477 (503)
T ss_pred eEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC----------cce
Confidence 999998654322 2334443 456678999999999999999999999999999999999987 788
Q ss_pred eeEEEeCC-CCEEEEeecCceEEEEE
Q 040987 450 RDIAFNHD-GGLVALRAENYCIHFYS 474 (762)
Q Consensus 450 ~~~~~s~~-~~~l~~~~~dg~i~i~d 474 (762)
..+.|+|. ...+|+++.+|.|++|+
T Consensus 478 i~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 478 IGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred EEEEecCCCcceeEecccCceeEecC
Confidence 99999995 45799999999999996
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-32 Score=231.07 Aligned_cols=280 Identities=20% Similarity=0.278 Sum_probs=238.1
Q ss_pred EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCC
Q 040987 106 QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPP 185 (762)
Q Consensus 106 ~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 185 (762)
.++.|..|.++|.++.|.-|| +|.++++.|++|++|+...|.+++++.+|.
T Consensus 9 r~~~l~~~qgaV~avryN~dG-------nY~ltcGsdrtvrLWNp~rg~liktYsghG---------------------- 59 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDG-------NYCLTCGSDRTVRLWNPLRGALIKTYSGHG---------------------- 59 (307)
T ss_pred hceeecccccceEEEEEccCC-------CEEEEcCCCceEEeecccccceeeeecCCC----------------------
Confidence 567788999999999999999 799999999999999999999999887664
Q ss_pred ceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEcc
Q 040987 186 KLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVP 264 (762)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~ 264 (762)
..|..++.+.|...++ +|.|..+.+||+.
T Consensus 60 --------------------------------------------------~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~ 89 (307)
T KOG0316|consen 60 --------------------------------------------------HEVLDAALSSDNSKFASCGGDKAVQVWDVN 89 (307)
T ss_pred --------------------------------------------------ceeeeccccccccccccCCCCceEEEEEcc
Confidence 3344556666777776 5589999999999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+++.. +.+.+|.+.|+.++|+.+...+++|+.|..+++||.++.. .+
T Consensus 90 TGkv~-----Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s----------------------------~e 136 (307)
T KOG0316|consen 90 TGKVD-----RRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS----------------------------FE 136 (307)
T ss_pred cCeee-----eecccccceeeEEEecCcceEEEeccccceeEEEEcccCC----------------------------CC
Confidence 99876 7788999999999999999999999999999999986653 35
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
+++.+....+.|.++..+ +..|+.|+.||+++.||++.|+.. ..-.+.+|+++.|++|++..++++.++++++.|-.
T Consensus 137 PiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~ 213 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-SDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKE 213 (307)
T ss_pred ccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-hhhcCCcceeEEecCCCCEEEEeeccceeeecccc
Confidence 678888888999998885 568999999999999999998763 33456789999999999999999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+|+++...++|... ..-...+++.....+++|++||.+++||+.....+..+.... ...+.++
T Consensus 214 tGklL~sYkGhkn~--------eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~---------~v~v~dl 276 (307)
T KOG0316|consen 214 TGKLLKSYKGHKNM--------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVS---------TVIVTDL 276 (307)
T ss_pred hhHHHHHhcccccc--------eeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCC---------ceeEEee
Confidence 99999999999843 233566778778899999999999999999988777765542 2338999
Q ss_pred EEecCCCeEEEEe
Q 040987 505 ALSQDGSLMSTVD 517 (762)
Q Consensus 505 ~~sp~g~~l~~~~ 517 (762)
+++|.-..|.++.
T Consensus 277 ~~hp~~~~f~~A~ 289 (307)
T KOG0316|consen 277 SCHPTMDDFITAT 289 (307)
T ss_pred ecccCccceeEec
Confidence 9999887777764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-29 Score=248.25 Aligned_cols=472 Identities=15% Similarity=0.208 Sum_probs=332.3
Q ss_pred cccccCCceeecCCCEEEEEe-CCEEEEEEcccce-EEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
+..|.+ ||||.+.+.||.+- +|.|.||++..+= +...+.++. ..|.+++|++.+ | |+|.+.+|+|.-|
T Consensus 25 Ps~I~s-lA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~----R----LFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 25 PSEIVS-LAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG----R----LFSSGLSGSITEW 95 (691)
T ss_pred ccceEE-EEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC----e----EEeecCCceEEEE
Confidence 456776 99999999999998 7999999998763 445566654 589999999776 3 4599999999999
Q ss_pred eCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc
Q 040987 149 DFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG 228 (762)
Q Consensus 149 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 228 (762)
|+.+++.+..++.
T Consensus 96 Dl~~lk~~~~~d~------------------------------------------------------------------- 108 (691)
T KOG2048|consen 96 DLHTLKQKYNIDS------------------------------------------------------------------- 108 (691)
T ss_pred ecccCceeEEecC-------------------------------------------------------------------
Confidence 9999987766542
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.|++++.+|.+..++.+ .||.+..++...++. .....+...++.|.+++|+|++..++.|+.||.|++
T Consensus 109 -----~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I---~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri 180 (691)
T KOG2048|consen 109 -----NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI---TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI 180 (691)
T ss_pred -----CCcceeEEEeCCccceEEeecCCceEEEEecCCceE---EEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence 24567888999999988855 889888888887775 344455555789999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
||...+......+.+.. .+. +..--|+++.|-.++ .|++|...|+|.+||...+.
T Consensus 181 wd~~~~~t~~~~~~~~d-----------------------~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 181 WDVKSGQTLHIITMQLD-----------------------RLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGT 236 (691)
T ss_pred EEcCCCceEEEeeeccc-----------------------ccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcc
Confidence 99988876542211111 111 123347788887665 78999999999999999998
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
.. ....|...|.+++.++++.++++++.|+.+..|...+......... ..+.|...+.+++..++ .+++|+
T Consensus 237 LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~------~r~~h~hdvrs~av~~~--~l~sgG 308 (691)
T KOG2048|consen 237 LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS------RRDLHAHDVRSMAVIEN--ALISGG 308 (691)
T ss_pred hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec------cccCCcccceeeeeecc--eEEecc
Confidence 85 4566888999999999999999999999999998877543211111 12233478899999887 899999
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce---
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--- 542 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--- 542 (762)
.|..+.+-.....+......... ...-..+...|..++++.- ....+.+|.+.+....
T Consensus 309 ~d~~l~i~~s~~~~~~~h~~~~~---------~p~~~~v~~a~~~~L~~~w----------~~h~v~lwrlGS~~~~g~~ 369 (691)
T KOG2048|consen 309 RDFTLAICSSREFKNMDHRQKNL---------FPASDRVSVAPENRLLVLW----------KAHGVDLWRLGSVILQGEY 369 (691)
T ss_pred eeeEEEEccccccCchhhhcccc---------ccccceeecCccceEEEEe----------ccccccceeccCccccccc
Confidence 99988876654421111100000 0001122333444444333 3457778877665211
Q ss_pred -e-EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 543 -F-TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 543 -~-~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
. .+-.. .... ...|.+.+.||+|++++.+.- ..++||.++....+.... .............+.|+-|+
T Consensus 370 ~~~~Llkl-~~k~-~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~------v~~~~~~~~~a~~i~ftid~ 440 (691)
T KOG2048|consen 370 NYIHLLKL-FTKE-KENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVIN------VDDVPLALLDASAISFTIDK 440 (691)
T ss_pred Chhhheee-ecCC-ccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEE------eccchhhhccceeeEEEecC
Confidence 1 11111 1223 568999999999999998874 468888887643222211 11111223466788999898
Q ss_pred cEEEEEc--CCeEEEEeCCCC--eEEEEec--cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 621 SVLAVAA--ETVITLWDPDRN--VLVAVIG--ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 621 ~~la~~~--d~~i~iwd~~~~--~~~~~l~--~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
..++..+ +..+.+.+.++. +.+..+. +-...|..+..|+||++||+.+.+|. |.+|++++++..+..
T Consensus 441 ~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~--I~v~nl~~~~~~~l~ 513 (691)
T KOG2048|consen 441 NKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQ--IFVYNLETLESHLLK 513 (691)
T ss_pred ceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccce--EEEEEcccceeecch
Confidence 8877766 688888888765 3333222 23456999999999999999999987 999999998765544
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-32 Score=244.59 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=254.5
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.++..+++.+|.+.|.++++.|...+|++|+.|+++.+||+.+++.. .+.+|-..+..+++|+...++++++.|+.|+-
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 45677889999999999999999999999999999999999999985 57779999999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
||+...+.++.+.+|- +.|.+++..|.-..|++++.|..+++||+++...+..+.. | ...
T Consensus 220 wDLe~nkvIR~YhGHl----------S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G----H------~~~ 279 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHL----------SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG----H------TNP 279 (460)
T ss_pred EechhhhhHHHhcccc----------ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC----C------CCc
Confidence 9999999999999988 8999999999999999999999999999999876665543 3 788
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
|..+.+.|-...+++++ .|++|++||+..++....+ ..| ...|++++.+|....+|+++.|. |+
T Consensus 280 V~~V~~~~~dpqvit~S---------~D~tvrlWDl~agkt~~tl-----t~h-kksvral~lhP~e~~fASas~dn-ik 343 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGS---------HDSTVRLWDLRAGKTMITL-----THH-KKSVRALCLHPKENLFASASPDN-IK 343 (460)
T ss_pred ceeEEeecCCCceEEec---------CCceEEEeeeccCceeEee-----ecc-cceeeEEecCCchhhhhccCCcc-ce
Confidence 99999999999999999 8899999999999876665 457 88999999999999999999875 99
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc--------ccCc
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE--------TLTP 651 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~--------~~~~ 651 (762)
-|++..+.....+ .+|..-|++++...|| ++++|+ +|.+.+||.++|-..+.++. ....
T Consensus 344 ~w~~p~g~f~~nl-----------sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEag 411 (460)
T KOG0285|consen 344 QWKLPEGEFLQNL-----------SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAG 411 (460)
T ss_pred eccCCccchhhcc-----------ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccc
Confidence 9999988877665 4788999999998887 455555 89999999999854443311 2344
Q ss_pred eeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 652 IMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|.+.+|...|..|++|..|.+ |++|.-+
T Consensus 412 I~as~fDktg~rlit~eadKt--Ik~~keD 439 (460)
T KOG0285|consen 412 IFASCFDKTGSRLITGEADKT--IKMYKED 439 (460)
T ss_pred eeEEeecccCceEEeccCCcc--eEEEecc
Confidence 899999999999999999998 9999754
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=276.17 Aligned_cols=288 Identities=16% Similarity=0.291 Sum_probs=247.9
Q ss_pred eeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 347 TTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 347 ~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
..+.+ +...|.++.|+++|+.+++++.++.+++|+..+.+ . ..+.+|...|..++|+|+++++++++.|+++++||
T Consensus 152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd 231 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWD 231 (456)
T ss_pred eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEee
Confidence 33434 37789999999999999999999999999997776 3 33467888999999999999999999999999999
Q ss_pred c-CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 423 M-PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 423 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+ ..+..++++.+|. ..|.+++|+|+++++++|+.|++|++||+++++....+..+ ...|
T Consensus 232 ~~~~~~~~~~l~gH~----------~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~h----------s~~i 291 (456)
T KOG0266|consen 232 LKDDGRNLKTLKGHS----------TYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGH----------SDGI 291 (456)
T ss_pred ccCCCeEEEEecCCC----------CceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeecc----------CCce
Confidence 9 5568999999998 78999999999999999999999999999998776666543 7789
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--eEEEEEeecCCCCC-ceEEEEEcCCCCeEEEEeCCCc
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDA-GISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~-~v~~~~~spd~~~l~~~~~dg~ 578 (762)
.+++|++++++|++++ .|+.|++||+.++... ..+ .++... .++++.|+|+++++++++.|+.
T Consensus 292 s~~~f~~d~~~l~s~s---------~d~~i~vwd~~~~~~~~~~~~-----~~~~~~~~~~~~~fsp~~~~ll~~~~d~~ 357 (456)
T KOG0266|consen 292 SGLAFSPDGNLLVSAS---------YDGTIRVWDLETGSKLCLKLL-----SGAENSAPVTSVQFSPNGKYLLSASLDRT 357 (456)
T ss_pred EEEEECCCCCEEEEcC---------CCccEEEEECCCCceeeeecc-----cCCCCCCceeEEEECCCCcEEEEecCCCe
Confidence 9999999999999998 8999999999999843 333 233122 6999999999999999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCC---CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-cCcee
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKK---AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-LTPIM 653 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-~~~v~ 653 (762)
+++||+..+....... .|.. .+.+...+++++++.+|+ |+.|++||..++..+..+.+| ...+.
T Consensus 358 ~~~w~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~ 426 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYT-----------GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVS 426 (456)
T ss_pred EEEEEccCCcceeeec-----------ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCcee
Confidence 9999999887766553 2333 444556688999999999 999999999999999999999 88899
Q ss_pred EEEEeCCCCEEEEEE--cCCCCeEEEEECC
Q 040987 654 NMSFVGSSEYLVATS--WGSKPQLSVWNMS 681 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~--~d~~~~v~vwd~~ 681 (762)
.++++|...++++++ .|+. +++|..+
T Consensus 427 ~~~~~~~~~~~~s~s~~~d~~--~~~w~~~ 454 (456)
T KOG0266|consen 427 DLSSHPTENLIASSSFEGDGL--IRLWKYD 454 (456)
T ss_pred ccccCCCcCeeeecCcCCCce--EEEecCC
Confidence 999999999999999 5665 9999754
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=236.98 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=254.6
Q ss_pred eeeeccCcCeEEEEEcC---CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 275 KITLHHTKKLTVLAFHP---TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
..-.+|..+|..++||| +|-+|++++.||.-.+-+-+++ .-+.++.+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg------------------------------dwigtfeg 57 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG------------------------------DWIGTFEG 57 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC------------------------------CcEEeeec
Confidence 45568999999999986 8889999999987766665555 44579999
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc-eEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM-EIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~-~~~~ 430 (762)
|.+.|++...+.+..+.++++.|-+-++||.-+|..+....|..-|..++|+.|.++|++|+.+.-++|||++.. .+..
T Consensus 58 hkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~ 137 (334)
T KOG0278|consen 58 HKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPK 137 (334)
T ss_pred cCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCch
Confidence 999999999999988899999999999999999999999999999999999999999999999999999999863 3456
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+.+|. +.|..+.|....+.+++.+.|++|++||.+++..+.++.. ...|+++.+++||
T Consensus 138 E~~ght----------g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----------~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 138 EISGHT----------GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----------NSPVTSLEVSQDG 196 (334)
T ss_pred hhcCCC----------CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----------CCCCcceeeccCC
Confidence 677776 8999999999999999999999999999999999888876 5679999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++|.++ ..+.|.+||..+-..+..... +..|.+...+|+...+++|+.|..++.||+.++..+
T Consensus 197 ~ilTia----------~gssV~Fwdaksf~~lKs~k~-------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi 259 (334)
T KOG0278|consen 197 RILTIA----------YGSSVKFWDAKSFGLLKSYKM-------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI 259 (334)
T ss_pred CEEEEe----------cCceeEEeccccccceeeccC-------ccccccccccCCCceEEecCcceEEEEEeccCCcee
Confidence 999888 457999999998887766542 568999999999999999999999999999999877
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
... ..+|.++|.|+.|+|||...|+|+ ||+|+||.+..++.
T Consensus 260 ~~~----------nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 260 GSY----------NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred eec----------ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 654 247899999999999999999999 99999999876643
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=244.34 Aligned_cols=285 Identities=20% Similarity=0.242 Sum_probs=244.5
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeec--------CCccceeEEEEeCCCCcccceeeeEEee
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE--------GHKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~--------~h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
.|.+..+.| ..|||||+||++|+ ||-|.|||..+|++.+.|+ -+..+|.|+.||.|. ..||||
T Consensus 210 Fg~KSh~Ec-A~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-------EMlAsG 281 (508)
T KOG0275|consen 210 FGQKSHVEC-ARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-------EMLASG 281 (508)
T ss_pred cccccchhh-eeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-------HHhhcc
Confidence 677788887 99999999999999 8999999999998776553 478899999999999 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.||.|+||.+.+|.|++.|
T Consensus 282 sqDGkIKvWri~tG~ClRrF------------------------------------------------------------ 301 (508)
T KOG0275|consen 282 SQDGKIKVWRIETGQCLRRF------------------------------------------------------------ 301 (508)
T ss_pred CcCCcEEEEEEecchHHHHh------------------------------------------------------------
Confidence 99999999999988876543
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
...|...|+|+.||.|+..++++
T Consensus 302 ---------------------------------------------------------drAHtkGvt~l~FSrD~SqiLS~ 324 (508)
T KOG0275|consen 302 ---------------------------------------------------------DRAHTKGVTCLSFSRDNSQILSA 324 (508)
T ss_pred ---------------------------------------------------------hhhhccCeeEEEEccCcchhhcc
Confidence 34678899999999999999999
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEE
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV 379 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~ 379 (762)
+.|.++++.-++++ ++++.+++|...|+...|++||.++++++.||+|++
T Consensus 325 sfD~tvRiHGlKSG------------------------------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv 374 (508)
T KOG0275|consen 325 SFDQTVRIHGLKSG------------------------------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV 374 (508)
T ss_pred cccceEEEeccccc------------------------------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence 99999999998776 456789999999999999999999999999999999
Q ss_pred EecCCCceecc---CCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 380 WQLDTGKKKFL---PRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 380 wd~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|+.++.++... .+...+|.++..-| +...++++...+++.|.++. |+.++.+...+.+- +...+.+.+
T Consensus 375 W~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREg-------GdFi~~~lS 446 (508)
T KOG0275|consen 375 WHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREG-------GDFINAILS 446 (508)
T ss_pred ecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccC-------CceEEEEec
Confidence 99999988532 23345778877766 44678888889999999987 78888887655332 677888999
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
|.|.++.+.++|+.++.|...+++....+... ...+-.++-+|..+.+|+-+ .|+.+++|.
T Consensus 447 pkGewiYcigED~vlYCF~~~sG~LE~tl~Vh----------EkdvIGl~HHPHqNllAsYs---------EDgllKLWk 507 (508)
T KOG0275|consen 447 PKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH----------EKDVIGLTHHPHQNLLASYS---------EDGLLKLWK 507 (508)
T ss_pred CCCcEEEEEccCcEEEEEEeecCceeeeeecc----------cccccccccCcccchhhhhc---------ccchhhhcC
Confidence 99999999999999999999999887777665 44578889999999999988 899999994
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=234.06 Aligned_cols=291 Identities=17% Similarity=0.232 Sum_probs=254.0
Q ss_pred eeeeecCcccccCCceee---cCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee
Q 040987 65 SKMIRGGRSYVSSPPAFS---NDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS 140 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s---~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s 140 (762)
.++..||+.+|.. ++|| |+|-+|++++ |+.--+-+-+||.-+.+|.||.+.|++.....+. ...|+++
T Consensus 7 pl~c~ghtrpvvd-l~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na-------~~aasaa 78 (334)
T KOG0278|consen 7 PLTCHGHTRPVVD-LAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNA-------TRAASAA 78 (334)
T ss_pred ceEEcCCCcceeE-EeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchh-------hhhhhhc
Confidence 4567999999998 9998 5899999999 8888888889999999999999999999999888 4567999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|-+-+|||.-+|..+++|
T Consensus 79 adftakvw~a~tgdelhsf------------------------------------------------------------- 97 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDELHSF------------------------------------------------------------- 97 (334)
T ss_pred ccchhhhhhhhhhhhhhhh-------------------------------------------------------------
Confidence 9999999998887765543
Q ss_pred cCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.|..-|.+++|+.|.++|++|+
T Consensus 98 ----------------------------------------------------------~hkhivk~~af~~ds~~lltgg 119 (334)
T KOG0278|consen 98 ----------------------------------------------------------EHKHIVKAVAFSQDSNYLLTGG 119 (334)
T ss_pred ----------------------------------------------------------hhhheeeeEEecccchhhhccc
Confidence 2445577899999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.+..++|||++..+ .+...+.+|.+.|..+.|....+.|++.+.|++|++|
T Consensus 120 ~ekllrvfdln~p~-----------------------------App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLW 170 (334)
T KOG0278|consen 120 QEKLLRVFDLNRPK-----------------------------APPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLW 170 (334)
T ss_pred hHHHhhhhhccCCC-----------------------------CCchhhcCCCCcceeEEEeccCceEEeeccCCceEEE
Confidence 99999999986543 3446788999999999999988999999999999999
Q ss_pred ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 381 QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 381 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
|.+++........+.+|.++.++++|++|.++ ..+.|.+||..+..+++.++-. ..|.+..++|+...
T Consensus 171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P-----------~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMP-----------CNVESASLHPKKEF 238 (334)
T ss_pred EeccCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCc-----------cccccccccCCCce
Confidence 99999999888899999999999999988776 6779999999998888877643 47889999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+++|++|..++.||..++..+... .++| .++|.|+.|+|||...|+|+ .||+|++|....++
T Consensus 239 fVaGged~~~~kfDy~TgeEi~~~---nkgh------~gpVhcVrFSPdGE~yAsGS---------EDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 239 FVAGGEDFKVYKFDYNTGEEIGSY---NKGH------FGPVHCVRFSPDGELYASGS---------EDGTIRLWQTTPGK 300 (334)
T ss_pred EEecCcceEEEEEeccCCceeeec---ccCC------CCceEEEEECCCCceeeccC---------CCceEEEEEecCCC
Confidence 999999999999999999876653 2333 78899999999999999999 99999999988765
Q ss_pred c
Q 040987 541 K 541 (762)
Q Consensus 541 ~ 541 (762)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 4
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-30 Score=224.53 Aligned_cols=277 Identities=17% Similarity=0.250 Sum_probs=239.2
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEE
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d 422 (762)
+.+++|...+.+++|+.+|..|++++.|+++.+|+++..+.. ...+|.+.|..++|+| +..++++++.|..|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 567789999999999999999999999999999999887553 3566777888999987 457899999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
.+.+++........ .-.-+.|+|+|++++++..|..|.+.|.++.+...+.+. ...+.
T Consensus 94 ~r~~k~~~~i~~~~-----------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-----------~~e~n 151 (313)
T KOG1407|consen 94 IRSGKCTARIETKG-----------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-----------KFEVN 151 (313)
T ss_pred eccCcEEEEeeccC-----------cceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-----------cceee
Confidence 99999988876543 335689999999999999999999999998776655433 45688
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.++|+.++.+++... +.|+|.|......+.+..+ .+| .....|+.|+|+|+++|+|+.|-.+.+|
T Consensus 152 e~~w~~~nd~Fflt~---------GlG~v~ILsypsLkpv~si-----~AH-~snCicI~f~p~GryfA~GsADAlvSLW 216 (313)
T KOG1407|consen 152 EISWNNSNDLFFLTN---------GLGCVEILSYPSLKPVQSI-----KAH-PSNCICIEFDPDGRYFATGSADALVSLW 216 (313)
T ss_pred eeeecCCCCEEEEec---------CCceEEEEecccccccccc-----ccC-CcceEEEEECCCCceEeeccccceeecc
Confidence 899998888777776 7799999999988777766 678 7888899999999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
|++.--+.+.+ ..+.-+|..+.||.||++||+|+ |..|-|=++++|..+..++ +.++...++|+|..
T Consensus 217 D~~ELiC~R~i-----------sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 217 DVDELICERCI-----------SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred ChhHhhhheee-----------ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence 99865554443 46788999999999999999999 9999999999999999986 88999999999999
Q ss_pred CEEEEEEcCCC
Q 040987 662 EYLVATSWGSK 672 (762)
Q Consensus 662 ~~l~s~~~d~~ 672 (762)
.+||.+.+|..
T Consensus 285 ~LLAyA~ddk~ 295 (313)
T KOG1407|consen 285 PLLAYACDDKD 295 (313)
T ss_pred ceeeEEecCCC
Confidence 99999988764
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-30 Score=287.96 Aligned_cols=288 Identities=14% Similarity=0.146 Sum_probs=233.9
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCC-CCCeEEEEecCCcEE
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESP-DPSLSSISCADNQVH 419 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~ 419 (762)
+..|...|.+++|+|+|++|++++.|+.|++|+...... .....+...+.+++|++ ++.+|++++.|+.|+
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~ 558 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ 558 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence 445899999999999999999999999999999764211 11122346788999987 478999999999999
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+||+.+++.+..+.+|. +.|.+++|+| ++.+|++++.|+.|++||+.++..+..+.. .
T Consensus 559 lWd~~~~~~~~~~~~H~----------~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----------~ 617 (793)
T PLN00181 559 VWDVARSQLVTEMKEHE----------KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----------K 617 (793)
T ss_pred EEECCCCeEEEEecCCC----------CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----------C
Confidence 99999999999998887 7899999997 789999999999999999998876655432 3
Q ss_pred eeEEEEEEe-cCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALS-QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~s-p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..+.++.|+ ++|.+|++++ .|+.|++||+..... ... ..+| ...|.++.|. ++.+|++++.|
T Consensus 618 ~~v~~v~~~~~~g~~latgs---------~dg~I~iwD~~~~~~~~~~-----~~~h-~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGS---------ADHKVYYYDLRNPKLPLCT-----MIGH-SKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCCCccceE-----ecCC-CCCEEEEEEe-CCCEEEEEECC
Confidence 358899995 5799999999 899999999987653 222 2578 8899999997 77899999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-----------
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV----------- 644 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~----------- 644 (762)
++|++||+..+.... .+.+.....+|...+..++|+|++++|++|+ |+.|++|+......+..
T Consensus 682 ~~ikiWd~~~~~~~~-----~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~ 756 (793)
T PLN00181 682 NTLKLWDLSMSISGI-----NETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSG 756 (793)
T ss_pred CEEEEEeCCCCcccc-----CCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccc
Confidence 999999997542110 1122334557888999999999999999998 99999999876543322
Q ss_pred --eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 645 --IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 645 --l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
...|...|.+++|+|++.+|++++.||. |++|++
T Consensus 757 ~~~~~~~~~V~~v~ws~~~~~lva~~~dG~--I~i~~~ 792 (793)
T PLN00181 757 LEVDDASQFISSVCWRGQSSTLVAANSTGN--IKILEM 792 (793)
T ss_pred cccCCCCcEEEEEEEcCCCCeEEEecCCCc--EEEEec
Confidence 1234556999999999999999999998 999997
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.2e-32 Score=243.30 Aligned_cols=276 Identities=16% Similarity=0.281 Sum_probs=234.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
....|+|+.+ |...+++|..|.+|++||..+..+. .+.+|.+.|.|+.|. .+.+++|+.|.+|++||.++++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 4467899988 4568999999999999999988775 578999999999874 5699999999999999999999999
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
++-.|. ..|..+.|+. .++++++.|.++.+||+.....+ .+.....+| ...|..+.|+ .
T Consensus 272 tlihHc----------eaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~i-t~rrVLvGH------rAaVNvVdfd--~ 330 (499)
T KOG0281|consen 272 TLIHHC----------EAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDI-TLRRVLVGH------RAAVNVVDFD--D 330 (499)
T ss_pred HHhhhc----------ceeEEEEEeC--CEEEEecCCceeEEEeccCchHH-HHHHHHhhh------hhheeeeccc--c
Confidence 999887 7888999984 48999999999999999876532 222233444 6778888885 4
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
+++++++ +|.+|++|++.+.+.+..+ .+| ...|.|+.+ .++++++|+.|.+|++||+..|.+.
T Consensus 331 kyIVsAS---------gDRTikvW~~st~efvRtl-----~gH-kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 331 KYIVSAS---------GDRTIKVWSTSTCEFVRTL-----NGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL 393 (499)
T ss_pred ceEEEec---------CCceEEEEeccceeeehhh-----hcc-cccceehhc--cCeEEEecCCCceEEEEeccccHHH
Confidence 6999999 9999999999999988776 689 889988887 5899999999999999999999988
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------EEEEeccccCceeEEEEeCC
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------LVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s~d 660 (762)
..++ +|+.-|.++.| |.+.+++|. ||+|+|||+.++. ++..+..|.+.|..+.| |
T Consensus 394 RvLe-----------GHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D 458 (499)
T KOG0281|consen 394 RVLE-----------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--D 458 (499)
T ss_pred HHHh-----------chHHhhhheee--cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--c
Confidence 7774 89999999999 677899998 9999999998764 44556679999999999 5
Q ss_pred CCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 661 SEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
...+++++.|.+ |.+||..++-..
T Consensus 459 ~fqIvsssHddt--ILiWdFl~~~~~ 482 (499)
T KOG0281|consen 459 EFQIISSSHDDT--ILIWDFLNGPPS 482 (499)
T ss_pred ceEEEeccCCCe--EEEEEcCCCCcc
Confidence 689999999998 999999876443
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.7e-30 Score=218.39 Aligned_cols=285 Identities=13% Similarity=0.159 Sum_probs=241.4
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
....+..+.++|..+.|+-||++.++++.|.+|++|+...+..+ ...+|+..|..++.+.|+..+++++.|..+.+||+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence 34678899999999999999999999999999999999998885 57889999999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++|+..+.+.+|. +.|..+.|+.+...+++|+.|..+++||-++..... ++.. +.....|.+
T Consensus 89 ~TGkv~Rr~rgH~----------aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP-iQil-------dea~D~V~S 150 (307)
T KOG0316|consen 89 NTGKVDRRFRGHL----------AQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP-IQIL-------DEAKDGVSS 150 (307)
T ss_pred ccCeeeeeccccc----------ceeeEEEecCcceEEEeccccceeEEEEcccCCCCc-cchh-------hhhcCceeE
Confidence 9999999999998 889999999999999999999999999998754321 1111 111456777
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+..+ +..+++|+ .||+++.||++.++..... .+| +|+++.|++|++....++.|+++++.|
T Consensus 151 i~v~--~heIvaGS---------~DGtvRtydiR~G~l~sDy-----~g~---pit~vs~s~d~nc~La~~l~stlrLlD 211 (307)
T KOG0316|consen 151 IDVA--EHEIVAGS---------VDGTVRTYDIRKGTLSSDY-----FGH---PITSVSFSKDGNCSLASSLDSTLRLLD 211 (307)
T ss_pred EEec--ccEEEeec---------cCCcEEEEEeecceeehhh-----cCC---cceeEEecCCCCEEEEeeccceeeecc
Confidence 7664 56788888 8999999999988764332 344 999999999999999999999999999
Q ss_pred cccccccccccCCceeeeeecccCCC--CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc-eeEEEEeC
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYKKK--AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP-IMNMSFVG 659 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~-v~~~~~s~ 659 (762)
-.+++.+...+ +|.. .-..++++.....+++|+ ||.|++||+.+...+..+..|... |.++.++|
T Consensus 212 k~tGklL~sYk-----------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp 280 (307)
T KOG0316|consen 212 KETGKLLKSYK-----------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHP 280 (307)
T ss_pred cchhHHHHHhc-----------ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeeccc
Confidence 99999988764 3332 334567777788999999 999999999999999999888777 89999999
Q ss_pred CCCEEEEEEcCCCCeEEEEEC
Q 040987 660 SSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.-..++++...+ +..|--
T Consensus 281 ~~~~f~~A~~~~---~~~~~~ 298 (307)
T KOG0316|consen 281 TMDDFITATGHG---DLFWYQ 298 (307)
T ss_pred CccceeEecCCc---eeceee
Confidence 877788887666 677753
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2e-30 Score=225.28 Aligned_cols=282 Identities=20% Similarity=0.231 Sum_probs=237.9
Q ss_pred cCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeE
Q 040987 60 YPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 60 ~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
+.+.+...+++|...|.+ ++|+.||..||+++ |+++.||+++..+.+..+ .+|.+.|..++|+|..+ ..+
T Consensus 8 ~~~l~~r~~~~~~~~v~S-v~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~------d~~ 80 (313)
T KOG1407|consen 8 FKSLKRRELQGHVQKVHS-VAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP------DLF 80 (313)
T ss_pred hhhhhhHHhhhhhhcceE-EEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC------cce
Confidence 344445667899999997 99999999999999 899999999888666543 68999999999999887 788
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|.+|++||++.+++...+.....-..+.+ ++++.. + +.+..|..|
T Consensus 81 atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~w--------sp~g~~---~-------------------~~~~kdD~i 130 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGKCTARIETKGENINITW--------SPDGEY---I-------------------AVGNKDDRI 130 (313)
T ss_pred EEecCCceEEEEEeccCcEEEEeeccCcceEEEE--------cCCCCE---E-------------------EEecCcccE
Confidence 8999999999999999999998876653222222 333332 1 567789999
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.+.|.++.+.. ........+.-++|+-++.++. ....|.|.|.....-+.. .....|.....|+.|+|+|++
T Consensus 131 t~id~r~~~~~--~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-----~si~AH~snCicI~f~p~Gry 203 (313)
T KOG1407|consen 131 TFIDARTYKIV--NEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-----QSIKAHPSNCICIEFDPDGRY 203 (313)
T ss_pred EEEEeccccee--ehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-----cccccCCcceEEEEECCCCce
Confidence 99999888776 3334456778889988777775 556799999999977655 677799999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
+|+|+.|..+.+||++.- -+.+.+..+.-+|..++|+.||++|+++++|.
T Consensus 204 fA~GsADAlvSLWD~~EL------------------------------iC~R~isRldwpVRTlSFS~dg~~lASaSEDh 253 (313)
T KOG1407|consen 204 FATGSADALVSLWDVDEL------------------------------ICERCISRLDWPVRTLSFSHDGRMLASASEDH 253 (313)
T ss_pred EeeccccceeeccChhHh------------------------------hhheeeccccCceEEEEeccCcceeeccCccc
Confidence 999999999999998543 35678888999999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD 415 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 415 (762)
.|-+-++++|.......+.++...++|+|...+||.++.|
T Consensus 254 ~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 254 FIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence 9999999999999999999999999999999999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-29 Score=284.19 Aligned_cols=311 Identities=16% Similarity=0.223 Sum_probs=241.1
Q ss_pred cccEEEEecCCccccc----eeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhh--eeeeeeeccCcCeE
Q 040987 213 NGRICKCNLTESRLAG----GVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERV--VMRKITLHHTKKLT 285 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~----~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~~~v~ 285 (762)
+|..++|+........ .....|...|.+++|+|+|++||+ +.|+.|+||++........ ........+...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 536 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS 536 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence 5667788777655432 223458899999999999999985 5799999999864211000 00011223456899
Q ss_pred EEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-
Q 040987 286 VLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS- 363 (762)
Q Consensus 286 ~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~- 363 (762)
+++|+| ++++|++++.||.|++||+.+++ .+..+.+|...|++++|+|
T Consensus 537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~~~------------------------------~~~~~~~H~~~V~~l~~~p~ 586 (793)
T PLN00181 537 GICWNSYIKSQVASSNFEGVVQVWDVARSQ------------------------------LVTEMKEHEKRVWSIDYSSA 586 (793)
T ss_pred eEEeccCCCCEEEEEeCCCeEEEEECCCCe------------------------------EEEEecCCCCCEEEEEEcCC
Confidence 999987 47899999999999999997653 3457788999999999996
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEe-CCCCCeEEEEecCCcEEEEEcCCce-EEEEEccCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTE-SPDPSLSSISCADNQVHLLKMPSME-IIRSISGIKLPCPL 441 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~ 441 (762)
++.+|++++.|++|++||+.++...........+.++.| ++++.++++|+.|+.|++||+++.+ .+..+.+|.
T Consensus 587 ~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~----- 661 (793)
T PLN00181 587 DPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHS----- 661 (793)
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCC-----
Confidence 789999999999999999998877654445568899999 4579999999999999999998765 456677766
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
..|.++.|. ++.++++++.|+.|++||+.... .+..+ .+| ...+..++|+|++++|++
T Consensus 662 -----~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~----~gh------~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 662 -----KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF----MGH------TNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred -----CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE----cCC------CCCeeEEEEcCCCCEEEE
Confidence 788999997 67899999999999999997532 22221 222 667889999999999999
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEE--------EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--------IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
++ .|+.|++|+............ .....+ ...|.+++|+|++.+|++++.||.|+||++
T Consensus 726 gs---------~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GS---------ETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDA-SQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred Ee---------CCCEEEEEECCCCCceEEEecccCCcccccccCCC-CcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 99 899999999876544322211 111234 567999999999999999999999999996
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=222.95 Aligned_cols=286 Identities=12% Similarity=0.148 Sum_probs=242.0
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
.+++|..+++.+.++.+|.+|++++.|.+..+|-..+|+.+ ...+|.+.|.++..+.+.+.+++|+.|.++++||+++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG 84 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG 84 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence 56889999999999999999999999999999998888876 67899999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCC-------ceeeEEeecccccCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDR-------GISEVQVCERNHQPG 494 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~-------~~~~~~~~~~~~~~~ 494 (762)
+.+..++.. ..|..+.|+++|++++..+++ +.|.++|++... +...+...
T Consensus 85 k~la~~k~~-----------~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------- 146 (327)
T KOG0643|consen 85 KQLATWKTN-----------SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------- 146 (327)
T ss_pred cEEEEeecC-----------CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC-------
Confidence 999998764 588999999999988877644 689999998432 23333322
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...++.+.|.|-+++|+++. .+|.|.+||.+++....... ..| ...|+.+.++||..++++++
T Consensus 147 ---~skit~a~Wg~l~~~ii~Gh---------e~G~is~~da~~g~~~v~s~----~~h-~~~Ind~q~s~d~T~FiT~s 209 (327)
T KOG0643|consen 147 ---DSKITSALWGPLGETIIAGH---------EDGSISIYDARTGKELVDSD----EEH-SSKINDLQFSRDRTYFITGS 209 (327)
T ss_pred ---ccceeeeeecccCCEEEEec---------CCCcEEEEEcccCceeeech----hhh-ccccccccccCCcceEEecc
Confidence 56799999999999999999 89999999999987654432 457 77999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--C-CeE------------EEEeCCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--E-TVI------------TLWDPDRN 639 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d-~~i------------~iwd~~~~ 639 (762)
.|.+-++||..+-+.++.+. ...++++.+++|-...++.|+ + ..| ++|++-..
T Consensus 210 ~Dttakl~D~~tl~v~Kty~------------te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e 277 (327)
T KOG0643|consen 210 KDTTAKLVDVRTLEVLKTYT------------TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE 277 (327)
T ss_pred cCccceeeeccceeeEEEee------------ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH
Confidence 99999999999888877763 467999999999877777664 2 222 33344444
Q ss_pred eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 640 VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+..+++|-++|++++|+|||+..++++.||. |++.-.+.
T Consensus 278 EEigrvkGHFGPINsvAfhPdGksYsSGGEDG~--VR~h~Fd~ 318 (327)
T KOG0643|consen 278 EEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGY--VRLHHFDS 318 (327)
T ss_pred HHhccccccccCcceeEECCCCcccccCCCCce--EEEEEecc
Confidence 677888999999999999999999999999998 88875443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.7e-31 Score=234.11 Aligned_cols=294 Identities=15% Similarity=0.188 Sum_probs=247.8
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhh---heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAER---VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.+..+..+.+.|..|||||+||+++ -||.|.+|+..+++... .+....+--+.+.|.|+.||.|..+||+|+.||.
T Consensus 207 ~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGk 286 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGK 286 (508)
T ss_pred heecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCc
Confidence 4555677889999999999999966 69999999999988651 1122233457889999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~ 383 (762)
|++|.+.+++ +++.+. .|+..|+++.|+.|+..+++++.|.++++.-++
T Consensus 287 IKvWri~tG~------------------------------ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK 336 (508)
T KOG0275|consen 287 IKVWRIETGQ------------------------------CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK 336 (508)
T ss_pred EEEEEEecch------------------------------HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccc
Confidence 9999998874 455665 899999999999999999999999999999999
Q ss_pred CCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEE
Q 040987 384 TGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLV 461 (762)
Q Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 461 (762)
+|+.. .+.+|.+.|+...|++||..+++++.||+|++|+..+.+++.+++.... +..|.++..-| +...+
T Consensus 337 SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~--------d~~vnsv~~~PKnpeh~ 408 (508)
T KOG0275|consen 337 SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGT--------DYPVNSVILLPKNPEHF 408 (508)
T ss_pred cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCC--------cccceeEEEcCCCCceE
Confidence 99985 5788999999999999999999999999999999999999999876542 24677777766 55688
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
+++...+++++.++. ++.+..+....+. .+..-+.+.+|.|.++.+.+ .|+.++.|...++..
T Consensus 409 iVCNrsntv~imn~q-GQvVrsfsSGkRE-------gGdFi~~~lSpkGewiYcig---------ED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 409 IVCNRSNTVYIMNMQ-GQVVRSFSSGKRE-------GGDFINAILSPKGEWIYCIG---------EDGVLYCFSVLSGKL 471 (508)
T ss_pred EEEcCCCeEEEEecc-ceEEeeeccCCcc-------CCceEEEEecCCCcEEEEEc---------cCcEEEEEEeecCce
Confidence 889999999999985 4455554332221 45567788999999999998 899999999999988
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
...+. -| ...+..++-+|..+.+|+-++||.+++|.
T Consensus 472 E~tl~-----Vh-EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 472 ERTLP-----VH-EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eeeee-----cc-cccccccccCcccchhhhhcccchhhhcC
Confidence 77764 46 77888999999999999999999999994
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=228.28 Aligned_cols=316 Identities=18% Similarity=0.250 Sum_probs=244.1
Q ss_pred CcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee
Q 040987 62 AVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS 140 (762)
Q Consensus 62 ~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s 140 (762)
-.+...-.-|.+.|.. +... +++|.+|+ ||.++|||. .|+..+++.||.++|.+++|.-..+ . -..++++|
T Consensus 95 aP~pl~~~~hdDWVSs-v~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~---~-~~~fvsas 166 (423)
T KOG0313|consen 95 APKPLQCFLHDDWVSS-VKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNS---S-SCLFVSAS 166 (423)
T ss_pred CCCccccccchhhhhh-hccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCC---c-cceEEEec
Confidence 3444555779999996 8877 78999999 999999996 7999999999999999888765442 1 02467999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|.++++|-++.++..-..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~------------------------------------------------------------- 185 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKA------------------------------------------------------------- 185 (423)
T ss_pred CCceEEEEEecCchhhhhH-------------------------------------------------------------
Confidence 9999999988765422100
Q ss_pred cCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
. ....+|...|.+++..++|.++++|+
T Consensus 186 ------------------------------------------------~-----~~~~GHk~~V~sVsv~~sgtr~~SgS 212 (423)
T KOG0313|consen 186 ------------------------------------------------L-----KVCRGHKRSVDSVSVDSSGTRFCSGS 212 (423)
T ss_pred ------------------------------------------------H-----hHhcccccceeEEEecCCCCeEEeec
Confidence 0 12238888899999999999999999
Q ss_pred cCCeEEEEeccCCc--eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDR--TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
.|..|.+|+..... .++....... .............++..+.+|..+|.++.|++ ...+++++.|.+|+
T Consensus 213 ~D~~lkiWs~~~~~~~~~E~~s~~rr-------k~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk 284 (423)
T KOG0313|consen 213 WDTMLKIWSVETDEEDELESSSNRRR-------KKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIK 284 (423)
T ss_pred ccceeeecccCCCccccccccchhhh-------hhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEE
Confidence 99999999832221 1111100000 00000011223467788999999999999987 56899999999999
Q ss_pred EEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 379 VWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 379 ~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.||+.++........+..+.++.++|..++|++|+.|..+++||.+++ -...++.+|+ +.|.++.|+
T Consensus 285 ~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~----------nwVssvkws 354 (423)
T KOG0313|consen 285 VWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK----------NWVSSVKWS 354 (423)
T ss_pred EEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecch----------hhhhheecC
Confidence 999999999887788889999999999999999999999999999874 3456788887 899999999
Q ss_pred CCC-CEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 456 HDG-GLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 456 ~~~-~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
|.. ..|++++.|+++++||+++.+ .+..+... ...|.++.|+ ++.++++|+ .|.+|++
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h----------~DKvl~vdW~-~~~~IvSGG---------aD~~l~i 414 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH----------NDKVLSVDWN-EGGLIVSGG---------ADNKLRI 414 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccC----------CceEEEEecc-CCceEEecc---------CcceEEE
Confidence 955 468899999999999999876 55555432 7789999996 466899998 8899999
Q ss_pred EEec
Q 040987 534 WVSG 537 (762)
Q Consensus 534 wd~~ 537 (762)
+...
T Consensus 415 ~~~~ 418 (423)
T KOG0313|consen 415 FKGS 418 (423)
T ss_pred eccc
Confidence 8654
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=224.57 Aligned_cols=315 Identities=13% Similarity=0.148 Sum_probs=247.9
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|..++.+.+|+|||.++|+|+.|..|+|.|++..-..........+ + ....-..++++..|.+
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~------~------~qa~hPvIRTlYDH~d 173 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG------D------TQARHPVIRTLYDHVD 173 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC------C------cccCCceEeehhhccC
Confidence 456789999999999999999999999999999998632111100000000 0 0001145688899999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.|+++.|+|....|++++.|++|+++|+...... .......++.++.|+|.|.+|++|.....+++||+++.++.-.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 9999999999999999999999999999865442 3445567899999999999999999999999999999877655
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
-... +.|.+.|.++.+++.+++.++++.||.|++||--+++++.++..... ...|.+..|..+|+
T Consensus 254 anPd-------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~--------gsevcSa~Ftkn~k 318 (430)
T KOG0640|consen 254 ANPD-------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHG--------GSEVCSAVFTKNGK 318 (430)
T ss_pred cCcc-------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcC--------CceeeeEEEccCCe
Confidence 4322 23558999999999999999999999999999999988877654333 56799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQ 590 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~ 590 (762)
++++.+ .|..+++|.+.+++.+......-..+. ..--+...|+....+++.-.+ .+.+.-||.++....
T Consensus 319 yiLsSG---------~DS~vkLWEi~t~R~l~~YtGAg~tgr-q~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~ 388 (430)
T KOG0640|consen 319 YILSSG---------KDSTVKLWEISTGRMLKEYTGAGTTGR-QKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRV 388 (430)
T ss_pred EEeecC---------CcceeeeeeecCCceEEEEecCCcccc-hhhhhhhhhcCccceEEccccccCceeeccccchhhh
Confidence 999998 889999999999988766543211122 222345667777777776543 467899999998877
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
... ..+|.+.+..+.-||.+.-+.+++ |..+++|--
T Consensus 389 ~l~----------slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 389 ALL----------SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhc----------ccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 665 247999999999999999999998 999999953
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=241.00 Aligned_cols=288 Identities=17% Similarity=0.225 Sum_probs=244.9
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.....+..|.+.+..+.|-++...|++++.|..|++|+....+. ..+.+..++++.+.|.++++.+++++.|+.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceee
Confidence 34567788999999999999988999999999999999987774 245566678999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|++...+...++.+|. ..|+++.|......+++++.|.+|++||+....+..++.. ...
T Consensus 246 Wnvd~~r~~~TLsGHt----------dkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----------~S~ 304 (459)
T KOG0288|consen 246 WNVDSLRLRHTLSGHT----------DKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----------GSQ 304 (459)
T ss_pred eeccchhhhhhhcccc----------cceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----------ccc
Confidence 9999999999999998 7889999988877799999999999999998766655443 233
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+.+++.+ ...++++. .|++|++||.++.......+. .+.|+++..+++|..|.+++.|.++.
T Consensus 305 cnDI~~~--~~~~~SgH---------~DkkvRfwD~Rs~~~~~sv~~-------gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGH---------FDKKVRFWDIRSADKTRSVPL-------GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred ccceEec--ceeeeecc---------cccceEEEeccCCceeeEeec-------CcceeeEeeccCCeEEeeecCCCcee
Confidence 4555554 45666776 788999999999988777642 56999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc--eeEEEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP--IMNMSF 657 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~--v~~~~~ 657 (762)
+.|+.+......+.-..+.| ....+.+.|||++.|+|+|+ ||.|+||++.++++...+.....+ |++++|
T Consensus 367 viDlRt~eI~~~~sA~g~k~-------asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W 439 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKC-------ASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSW 439 (459)
T ss_pred eeecccccEEEEeecccccc-------ccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEE
Confidence 99999988777663222222 34588999999999999999 999999999999999888765555 999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|.|..|++++.++. +.+|.
T Consensus 440 ~~sG~~Llsadk~~~--v~lW~ 459 (459)
T KOG0288|consen 440 NPSGSGLLSADKQKA--VTLWT 459 (459)
T ss_pred cCCCchhhcccCCcc--eEecC
Confidence 999999999999998 99993
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-28 Score=217.53 Aligned_cols=292 Identities=14% Similarity=0.206 Sum_probs=234.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEec--CCcEEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCA--DNQVHLLK 422 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d 422 (762)
.+.+......|.++.|+++|.++++++.|.++++||..+++... +......+..+.|......++.++. |.+|+..+
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 35556667889999999999999999999999999999998864 4444556777888776677766666 88999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+.+.+.++.|.||. ..|.+++.+|-+..+++++.|++|++||++..++...+... .-.
T Consensus 87 l~dNkylRYF~GH~----------~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~------------~~p 144 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHK----------KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS------------GRP 144 (311)
T ss_pred eecCceEEEcCCCC----------ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC------------CCc
Confidence 99999999999998 78999999999999999999999999999977666555432 234
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
..||+|+|-++|++. +...|++||++.-. .+...-. +..+. ....+.+.|||||++++.++..+.+++
T Consensus 145 i~AfDp~GLifA~~~---------~~~~IkLyD~Rs~dkgPF~tf~-i~~~~-~~ew~~l~FS~dGK~iLlsT~~s~~~~ 213 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN---------GSELIKLYDLRSFDKGPFTTFS-ITDND-EAEWTDLEFSPDGKSILLSTNASFIYL 213 (311)
T ss_pred ceeECCCCcEEEEec---------CCCeEEEEEecccCCCCceeEc-cCCCC-ccceeeeEEcCCCCEEEEEeCCCcEEE
Confidence 679999999999998 55699999998653 2222111 11233 568899999999999999999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVG 659 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~ 659 (762)
.|.-+|.....+. .+ .....--....|+||++++.+|+ ||+|.+|++++|+.+..+++ +.+++.++.|+|
T Consensus 214 lDAf~G~~~~tfs-----~~---~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP 285 (311)
T KOG1446|consen 214 LDAFDGTVKSTFS-----GY---PNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP 285 (311)
T ss_pred EEccCCcEeeeEe-----ec---cCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC
Confidence 9999988665552 10 01111225789999999999998 89999999999999999988 688999999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECCC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.-.+++++ +.. +.+|=...
T Consensus 286 ~~~mf~sa--~s~--l~fw~p~~ 304 (311)
T KOG1446|consen 286 RYAMFVSA--SSN--LVFWLPDE 304 (311)
T ss_pred ceeeeeec--Cce--EEEEeccc
Confidence 76666666 444 88885543
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=220.09 Aligned_cols=309 Identities=15% Similarity=0.120 Sum_probs=224.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEEec-CCcEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSISCA-DNQVH 419 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~ 419 (762)
+..+++|.+.|++++|+.||++|++++.|+.|++|+++..... ...-.-+..+.++|+||-+.+++... .+.++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 3578899999999999999999999999999999999874431 11111235688999999988776655 45799
Q ss_pred EEEcCCceEEEEEccCC---CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 420 LLKMPSMEIIRSISGIK---LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|.+...+. ....-+. .....+..|.-.+..+-...++++|++++.|..|.+|++. |+.+..+...
T Consensus 159 vyk~~K~~d-G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn--------- 227 (420)
T KOG2096|consen 159 VYKLVKKTD-GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN--------- 227 (420)
T ss_pred EEEeeeccc-CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc---------
Confidence 998753211 1111111 1112334455667778888889999999999999999998 7666665443
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC---CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ---NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
...-+..+.||+|+++++++ -.-.|++|.+--+ ........+.+.|| ...|..++|||+...+++.
T Consensus 228 -q~~n~~aavSP~GRFia~~g---------FTpDVkVwE~~f~kdG~fqev~rvf~LkGH-~saV~~~aFsn~S~r~vtv 296 (420)
T KOG2096|consen 228 -QSSNYDAAVSPDGRFIAVSG---------FTPDVKVWEPIFTKDGTFQEVKRVFSLKGH-QSAVLAAAFSNSSTRAVTV 296 (420)
T ss_pred -cccccceeeCCCCcEEEEec---------CCCCceEEEEEeccCcchhhhhhhheeccc-hhheeeeeeCCCcceeEEE
Confidence 34457789999999999998 4567999987422 21111222345899 9999999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-cccCce
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG-ETLTPI 652 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~-~~~~~v 652 (762)
+.||+++|||++-......-+..--..........+....++.||+|+.||.+....+++|..++|+....++ .|...|
T Consensus 297 SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~I 376 (420)
T KOG2096|consen 297 SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTI 376 (420)
T ss_pred ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCce
Confidence 9999999999864322211100000000111223444558999999999999988899999999998776663 488889
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+++|++||++++++++.- +++..
T Consensus 377 s~is~~~~g~~~atcGdr~---vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSDGKYIATCGDRY---VRVIR 400 (420)
T ss_pred eeEEecCCCcEEeeeccee---eeeec
Confidence 9999999999999998755 77775
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=256.01 Aligned_cols=309 Identities=20% Similarity=0.294 Sum_probs=245.1
Q ss_pred eccCcCeEEEEEcCCCcEEEEee--cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGD--VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
..+...|.++..+|||..+|+|+ .||.+++|+.+.--.-. ......-.+.+..+..|.+.
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~------------------~~~~~~l~k~l~~m~~h~~s 71 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK------------------EEKNENLPKHLCTMDDHDGS 71 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchh------------------hhhhcccchhheeeccccCc
Confidence 34556799999999999999999 89999999864221000 00000123456778889999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCC----------Cc---------eeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDT----------GK---------KKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----------~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
|.|+.|+|||++||+|++|+.|.+|+... |. ...+.+|...|..++|+|++.++++++.|+
T Consensus 72 v~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~Dn 151 (942)
T KOG0973|consen 72 VNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDN 151 (942)
T ss_pred eeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccc
Confidence 99999999999999999999999999873 11 134677899999999999999999999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|.+|+..+.+.+..+.+|. +.|..+.|.|-|+++|+-+.|++|++|++.+-.....+....... .
T Consensus 152 sViiwn~~tF~~~~vl~~H~----------s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~----~ 217 (942)
T KOG0973|consen 152 SVIIWNAKTFELLKVLRGHQ----------SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES----P 217 (942)
T ss_pred eEEEEccccceeeeeeeccc----------ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC----C
Confidence 99999999999999999998 888999999999999999999999999977655544444332211 1
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CC---
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RR--- 568 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~--- 568 (762)
....+..+.|||||++|++...- .+...++.|.+..+.+.-..+ -|| ..++.++.|+|. .+
T Consensus 218 ~~T~f~RlSWSPDG~~las~nA~-----n~~~~~~~IieR~tWk~~~~L-----vGH-~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 218 LTTFFLRLSWSPDGHHLASPNAV-----NGGKSTIAIIERGTWKVDKDL-----VGH-SAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred CcceeeecccCCCcCeecchhhc-----cCCcceeEEEecCCceeeeee-----ecC-CCceEEEEeChHHhccccccCC
Confidence 15668999999999999997521 014568888888777655554 689 889999999982 11
Q ss_pred ---------eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 569 ---------AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ---------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.+|+|+.|++|.||.....+...... .-....|.+|+|+|||..|.+++ ||+|.+..++.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~----------~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIH----------NLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCCCchhhhh----------hhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 67899999999999997666554431 22468999999999999999998 99999999876
Q ss_pred C
Q 040987 639 N 639 (762)
Q Consensus 639 ~ 639 (762)
.
T Consensus 357 ~ 357 (942)
T KOG0973|consen 357 K 357 (942)
T ss_pred H
Confidence 4
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=232.04 Aligned_cols=309 Identities=15% Similarity=0.158 Sum_probs=240.9
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
....+.+|+..|.++++.|.|.+|++|+.|.+|++||+..... ...+.....|.++.|++.|..|++.+.....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 3457788999999999999999999999999999999986543 2344556789999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCC--CCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 419 HLLKMPSMEIIRSISGIKLP--CPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+++|-...+.....+|...- ......|-..+++.+|+|+.+ .+++++.||++++||+...+......... +..
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----~~~ 314 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----PAG 314 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec----cCC
Confidence 99999877666666554421 223344557889999999654 68899999999999998765433322211 111
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC--ceEEEEEcCCCCeEEEE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA--GISAVAFHPNRRAAVSS 573 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~--~v~~~~~spd~~~l~~~ 573 (762)
+....++..+|+|||++||++. .||.|.+|+.........+. +-.+| .. .|++++||+||++|++-
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc---------~DGSIQ~W~~~~~~v~p~~~--vk~AH-~~g~~Itsi~FS~dg~~LlSR 382 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGC---------LDGSIQIWDKGSRTVRPVMK--VKDAH-LPGQDITSISFSYDGNYLLSR 382 (641)
T ss_pred CcccCceeeecCCCcchhhhcc---------cCCceeeeecCCcccccceE--eeecc-CCCCceeEEEeccccchhhhc
Confidence 2256789999999999999999 89999999985443322221 23567 55 89999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEec
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l~ 646 (762)
+.|+++++||++..+...... ..-.....-+.++||||.++|++|. .|.+++||..+.+.+..+.
T Consensus 383 g~D~tLKvWDLrq~kkpL~~~--------tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 383 GFDDTLKVWDLRQFKKPLNVR--------TGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred cCCCceeeeeccccccchhhh--------cCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 999999999998765433221 0111234557899999999999984 2789999999999999988
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
-....|..+.|+|.=+.|..++.||. +++|=
T Consensus 455 i~~aSvv~~~WhpkLNQi~~gsgdG~--~~vyY 485 (641)
T KOG0772|consen 455 ISTASVVRCLWHPKLNQIFAGSGDGT--AHVYY 485 (641)
T ss_pred CCCceEEEEeecchhhheeeecCCCc--eEEEE
Confidence 77788999999998888999999998 88874
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-28 Score=239.76 Aligned_cols=278 Identities=18% Similarity=0.249 Sum_probs=239.3
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
..-+.|+ ..+.||++....|++|+..++... .....+...|+++.|+++|.+||+|..+|.|.|||....+.
T Consensus 180 ~nlldWs-s~n~laValg~~vylW~~~s~~v~-----~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-- 251 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALGQSVYLWSASSGSVT-----ELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-- 251 (484)
T ss_pred hhHhhcc-cCCeEEEEecceEEEEecCCCceE-----EeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc--
Confidence 3456777 567889999999999999998854 44444588999999999999999999999999999876643
Q ss_pred cccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIG 394 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~ 394 (762)
+..+.+ |...|-+++|. +..+.+|+.++.|..+|++..+.. .+..|.
T Consensus 252 ----------------------------~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~ 301 (484)
T KOG0305|consen 252 ----------------------------TRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHR 301 (484)
T ss_pred ----------------------------cccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence 356666 99999999997 668999999999999999987763 367788
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEee--cCceEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRA--ENYCIH 471 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~--~dg~i~ 471 (762)
..|..+.|++|++++++|+.|+.+.|||....++...+..|. ..|..++|+| ....||+|+ .|++|+
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~----------aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHT----------AAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccc----------eeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 999999999999999999999999999998888889999888 8999999999 566788875 789999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+||..++..+..+.. ...|..+.|++..+-|+++... .++.|.||+..+.+....+ .
T Consensus 372 fwn~~~g~~i~~vdt-----------gsQVcsL~Wsk~~kEi~sthG~-------s~n~i~lw~~ps~~~~~~l-----~ 428 (484)
T KOG0305|consen 372 FWNTNTGARIDSVDT-----------GSQVCSLIWSKKYKELLSTHGY-------SENQITLWKYPSMKLVAEL-----L 428 (484)
T ss_pred EEEcCCCcEeccccc-----------CCceeeEEEcCCCCEEEEecCC-------CCCcEEEEeccccceeeee-----c
Confidence 999999988777655 5669999999999877777532 6679999999987666555 6
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+| ...|..++++|||..+++|+.|.++++|++-+.
T Consensus 429 gH-~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 429 GH-TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CC-cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 89 899999999999999999999999999998764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-29 Score=220.48 Aligned_cols=298 Identities=17% Similarity=0.248 Sum_probs=243.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC------------Cc-------eeccCCCCCCeEEEEeCCCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT------------GK-------KKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~------------~~-------~~~~~~~~~~v~~~~~s~~~ 406 (762)
...+..|..++.+.+|++||.++++|+.|..|++.|++. +. ...+..|..+|.++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 356788999999999999999999999999999999872 11 12356677899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
..|++++.|++|++||.......+.++.... ...|.++.|+|.|.+|++|.+...+++||+.+.+......
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd--------~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan- 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQD--------TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN- 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhc--------cceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC-
Confidence 9999999999999999986433333322221 1478999999999999999999999999999876543322
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
|.++|...|+++.+++.|++.++++ .||.|++||--+++++.++. .+|....|.+..|..+
T Consensus 256 ------Pd~qht~ai~~V~Ys~t~~lYvTaS---------kDG~IklwDGVS~rCv~t~~----~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 256 ------PDDQHTGAITQVRYSSTGSLYVTAS---------KDGAIKLWDGVSNRCVRTIG----NAHGGSEVCSAVFTKN 316 (430)
T ss_pred ------cccccccceeEEEecCCccEEEEec---------cCCcEEeeccccHHHHHHHH----hhcCCceeeeEEEccC
Confidence 4455689999999999999999999 99999999999999888775 5786778999999999
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEE
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~ 644 (762)
|+++.+.+.|..+++|++.++..+....... ..+....-+...|.....++..-. .+.++-||..++..+..
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg------~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l 390 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAG------TTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVAL 390 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCC------cccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhh
Confidence 9999999999999999999998877653100 011122234566777778887776 68899999999866554
Q ss_pred e-ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 645 I-GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 645 l-~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+ -+|++.+..+.-||.+.-+++|+.|-. +++|-
T Consensus 391 ~slgHn~a~R~i~HSP~~p~FmTcsdD~r--aRFWy 424 (430)
T KOG0640|consen 391 LSLGHNGAVRWIVHSPVEPAFMTCSDDFR--ARFWY 424 (430)
T ss_pred cccCCCCCceEEEeCCCCCceeeecccce--eeeee
Confidence 4 379999999999999999999999998 99995
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=245.69 Aligned_cols=283 Identities=12% Similarity=0.163 Sum_probs=216.3
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc-----------cccccccc--------------C
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN-----------LNLMNNEE--------------E 333 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-----------~~~~~~~~--------------~ 333 (762)
.|.+.|.++.||+||+|||+|+.|+.|+||.+...+.......... ........ +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 8999999999999999999999999999999876322111100000 00000000 0
Q ss_pred CCCcc-----cCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC-CCC
Q 040987 334 RPGVR-----DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPS 407 (762)
Q Consensus 334 ~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~ 407 (762)
...+. ..-..+++..+.||.+.|.++.|+.++ +|++++.|.+|++|++...+++....|..-|+|++|+| |.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDr 423 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDR 423 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEecCCeeEEEEecccCCC
Confidence 00100 011356778899999999999999765 89999999999999999999999999999999999999 789
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
++++|+-|+.++||++...+...-...+ ..|++++|.|||+..++|+.+|.+++|+....+........
T Consensus 424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-----------~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 424 YFISGSLDGKVRLWSISDKKVVDWNDLR-----------DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred cEeecccccceEEeecCcCeeEeehhhh-----------hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 9999999999999999977766554433 58899999999999999999999999999988777766665
Q ss_pred cccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
.+...... ...|+.+.|.|... .+++.+ .|..|+|||.++...+..++.. +....-....|+.|
T Consensus 493 ~~~~Kk~~--~~rITG~Q~~p~~~~~vLVTS---------nDSrIRI~d~~~~~lv~KfKG~----~n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 493 LHNKKKKQ--GKRITGLQFFPGDPDEVLVTS---------NDSRIRIYDGRDKDLVHKFKGF----RNTSSQISASFSSD 557 (712)
T ss_pred eccCcccc--CceeeeeEecCCCCCeEEEec---------CCCceEEEeccchhhhhhhccc----ccCCcceeeeEccC
Confidence 44332222 22799999987543 344444 8899999999888777766531 21233456789999
Q ss_pred CCeEEEEeCCCcEEEEEccccc
Q 040987 567 RRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
|++|+++++|..|++|++....
T Consensus 558 gk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 558 GKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred CCEEEEeecCceEEEEeCCCCc
Confidence 9999999999999999985443
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=221.42 Aligned_cols=290 Identities=16% Similarity=0.193 Sum_probs=233.6
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC---CCeEEEEecCCcEEEEEcCCceE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD---PSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
|.+.|.++... ++.|++++.||.+++||..........+|.+++.+++|--. ...+++++.|.++++|..+.++.
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~ 181 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGEN 181 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchh
Confidence 88888888876 67999999999999999987777889999999998887432 34699999999999999887654
Q ss_pred E----EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC--ceeeEEee-------------cc
Q 040987 429 I----RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR--GISEVQVC-------------ER 489 (762)
Q Consensus 429 ~----~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~-------------~~ 489 (762)
. ..-.||. ..|.++...++|..+++++.|.+|.+|+..+.. ........ ..
T Consensus 182 ~~~~~~~~~GHk----------~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~ 251 (423)
T KOG0313|consen 182 KVKALKVCRGHK----------RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRT 251 (423)
T ss_pred hhhHHhHhcccc----------cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccC
Confidence 3 2233655 889999999999999999999999999933221 11110000 00
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
......+|..+|.++.|++ ...+.+++ .|.+|+.||+.++.....+.+ ...++++..+|..++
T Consensus 252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~S---------wDHTIk~WDletg~~~~~~~~-------~ksl~~i~~~~~~~L 314 (423)
T KOG0313|consen 252 PLVTLEGHTEPVSSVVWSD-ATVIYSVS---------WDHTIKVWDLETGGLKSTLTT-------NKSLNCISYSPLSKL 314 (423)
T ss_pred ceEEecccccceeeEEEcC-CCceEeec---------ccceEEEEEeecccceeeeec-------CcceeEeecccccce
Confidence 0012244689999999998 66777777 899999999999998877754 668999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcE-EEEEc-CCeEEEEeCCCCe-EEEEec
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSV-LAVAA-ETVITLWDPDRNV-LVAVIG 646 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~-la~~~-d~~i~iwd~~~~~-~~~~l~ 646 (762)
|++|+.|..+++||.+++.-.. ....+.+|...|.++.|+|...+ |++|+ |+++++||+++.+ .+..+.
T Consensus 315 l~~gssdr~irl~DPR~~~gs~--------v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~ 386 (423)
T KOG0313|consen 315 LASGSSDRHIRLWDPRTGDGSV--------VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA 386 (423)
T ss_pred eeecCCCCceeecCCCCCCCce--------eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence 9999999999999998874322 22346689999999999997765 56667 9999999999987 899999
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+|.+.|.++.|.. +..|++||.|.+ |+++.-.
T Consensus 387 ~h~DKvl~vdW~~-~~~IvSGGaD~~--l~i~~~~ 418 (423)
T KOG0313|consen 387 GHNDKVLSVDWNE-GGLIVSGGADNK--LRIFKGS 418 (423)
T ss_pred cCCceEEEEeccC-CceEEeccCcce--EEEeccc
Confidence 9999999999986 679999999998 9988643
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=238.55 Aligned_cols=274 Identities=18% Similarity=0.237 Sum_probs=235.7
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc-C
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG-I 435 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~ 435 (762)
-+.|+.. +.|+.+. ...|++|+..+++...+... ...|+++.|+++|.+|++|..+|.|.|||..+.+.++.+.+ |
T Consensus 182 lldWss~-n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h 259 (484)
T KOG0305|consen 182 LLDWSSA-NVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSH 259 (484)
T ss_pred HhhcccC-CeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCc
Confidence 3577743 4566554 46899999999997655554 78999999999999999999999999999999888888888 5
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. ..|.+++|. +..+.+|+.++.|..+|++..+..... ...| ...|..+.|++|++++|+
T Consensus 260 ~----------~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~---~~~H------~qeVCgLkws~d~~~lAS 318 (484)
T KOG0305|consen 260 A----------SRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST---LQGH------RQEVCGLKWSPDGNQLAS 318 (484)
T ss_pred C----------ceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh---hhcc------cceeeeeEECCCCCeecc
Confidence 5 789999999 568999999999999999987665541 2333 788999999999999999
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEe--CCCcEEEEEccccccccc
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSS--YGGDFKVWICNDELQQKD 592 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~--~dg~i~iwd~~~~~~~~~ 592 (762)
++ .|+.+.|||.........+ ..| ...|..++|+| ...+||+|+ .|+.|++||..++..+..
T Consensus 319 Gg---------nDN~~~Iwd~~~~~p~~~~-----~~H-~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 319 GG---------NDNVVFIWDGLSPEPKFTF-----TEH-TAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CC---------CccceEeccCCCccccEEE-----ecc-ceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 99 8999999999777666655 578 99999999999 566888865 689999999999988877
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-c--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-A--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.. ....|..+.|++..+-|+++ + ++.|.||+..+.+.+..+.+|...|..+++||||..+++++.
T Consensus 384 vd------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~ 451 (484)
T KOG0305|consen 384 VD------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAA 451 (484)
T ss_pred cc------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecc
Confidence 62 47889999999998777765 3 789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEECCCC
Q 040987 670 GSKPQLSVWNMSKL 683 (762)
Q Consensus 670 d~~~~v~vwd~~~~ 683 (762)
|.+ +++|++-+.
T Consensus 452 DET--lrfw~~f~~ 463 (484)
T KOG0305|consen 452 DET--LRFWNLFDE 463 (484)
T ss_pred cCc--EEeccccCC
Confidence 999 999998764
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=208.65 Aligned_cols=292 Identities=13% Similarity=0.159 Sum_probs=230.4
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 184 (762)
++.+.+..-.+.|+++.|+++| .+|++++.|.++++||..+|++++++..+.
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G-------~~litss~dDsl~LYd~~~g~~~~ti~skk--------------------- 56 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDG-------LLLITSSEDDSLRLYDSLSGKQVKTINSKK--------------------- 56 (311)
T ss_pred ccccccccCCCceeEEEecCCC-------CEEEEecCCCeEEEEEcCCCceeeEeeccc---------------------
Confidence 3455666678899999999999 578899999999999999999999886543
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EEE--eCCeEEEE
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR--KQRKLLIW 261 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~--~~~~i~iw 261 (762)
-.+..++|......+ .++ .|.+|+..
T Consensus 57 ---------------------------------------------------yG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 57 ---------------------------------------------------YGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ---------------------------------------------------ccccEEEEecCCceEEEccCCCCCceEEE
Confidence 122333443333333 333 47899999
Q ss_pred EccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCC
Q 040987 262 KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDND 341 (762)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (762)
++.+.+.. +.+.+|...|++++.+|-+..+++++.|++|++||++..+.
T Consensus 86 sl~dNkyl-----RYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c-------------------------- 134 (311)
T KOG1446|consen 86 SLHDNKYL-----RYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC-------------------------- 134 (311)
T ss_pred EeecCceE-----EEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC--------------------------
Confidence 99999876 89999999999999999889999999999999999975432
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---ec--cC-CCCCCeEEEEeCCCCCeEEEEecC
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KF--LP-RIGSPLLYFTESPDPSLSSISCAD 415 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~--~~-~~~~~v~~~~~s~~~~~l~~~~~d 415 (762)
...+ +...-..++|.|+|-.+|.+.....|++||++.-.. .. +. ........+.|||||++++.++..
T Consensus 135 ----qg~l--~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~ 208 (311)
T KOG1446|consen 135 ----QGLL--NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNA 208 (311)
T ss_pred ----ceEE--ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCC
Confidence 1122 222234578999999999888877999999987533 11 11 334578899999999999999999
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+.+++.|.-+|..+.++.++.... ..-.+.+|+||++++++++.||+|.+|+++++..+..+....
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~-------~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~------- 274 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAG-------NLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPN------- 274 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCC-------CcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCC-------
Confidence 999999999999999998877432 223678999999999999999999999999998877765531
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
..++.++.|+|.-..+++++ ..+.+|=....
T Consensus 275 --~~~~~~~~fnP~~~mf~sa~-----------s~l~fw~p~~~ 305 (311)
T KOG1446|consen 275 --GGPVSCVRFNPRYAMFVSAS-----------SNLVFWLPDED 305 (311)
T ss_pred --CCCccccccCCceeeeeecC-----------ceEEEEecccc
Confidence 56688999999988888876 47888866543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=246.10 Aligned_cols=283 Identities=17% Similarity=0.207 Sum_probs=234.8
Q ss_pred eeeecC-cccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee-ecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 66 KMIRGG-RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS-LEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 66 ~~~~~h-~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~-l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
..+.+| ...+.+ ..|. +.+++++. +++|.+||..++..+.+ +.||.+.|++++|...+ .+|++|+.|
T Consensus 201 ~~~~~~~~~~~~~-~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~-------~~lvsgS~D 270 (537)
T KOG0274|consen 201 KVLLGTDDHVVLC-LQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGG-------DKLVSGSTD 270 (537)
T ss_pred eeecccCcchhhh-heee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCC-------CEEEEEecC
Confidence 344444 445555 8888 45777777 69999999999999888 99999999999999855 688899999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
.+++|||..+|+|.+.+.+|. .+.++.+.. +.. ++|+.|.+|++|++
T Consensus 271 ~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~-----------------~~~---------------~sgs~D~tVkVW~v 318 (537)
T KOG0274|consen 271 KTERVWDCSTGECTHSLQGHTSSVRCLTIDP-----------------FLL---------------VSGSRDNTVKVWDV 318 (537)
T ss_pred CcEEeEecCCCcEEEEecCCCceEEEEEccC-----------------ceE---------------eeccCCceEEEEec
Confidence 999999999999999999987 555553200 000 67899999999999
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.++.++ ..+.+|..+|.++.+. +.+++ ++.|+.|.+||+.++++. +.+.+|...|.++.+.+. ..+++|+
T Consensus 319 ~n~~~l-~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl-----~sl~gH~~~V~sl~~~~~-~~~~Sgs 389 (537)
T KOG0274|consen 319 TNGACL-NLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCL-----KSLSGHTGRVYSLIVDSE-NRLLSGS 389 (537)
T ss_pred cCcceE-EEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceee-----eeecCCcceEEEEEecCc-ceEEeee
Confidence 999999 5555699999999999 55665 568999999999988877 888999999999988765 7899999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.|+.|++||+.+.. +++..+.+|..-+..+.+ .+++|++++.|++|++|
T Consensus 390 ~D~~IkvWdl~~~~-----------------------------~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~W 438 (537)
T KOG0274|consen 390 LDTTIKVWDLRTKR-----------------------------KCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLW 438 (537)
T ss_pred eccceEeecCCchh-----------------------------hhhhhhcCCccccccccc--ccceeEeccccccEEEe
Confidence 99999999997662 356788999988876665 56799999999999999
Q ss_pred ecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 381 QLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 381 d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
|..++++..... +...+..+++. ...+++++.++.+.+||+++++..+.+
T Consensus 439 D~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 439 DAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred ecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999999865443 34678888776 467888889999999999999888876
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-29 Score=226.33 Aligned_cols=294 Identities=16% Similarity=0.225 Sum_probs=238.5
Q ss_pred eeeeeeeccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
+....+.+|.++|.|++=+|.. ..+|+|+.||.|++||+... .+...+.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR------------------------------~~~~~f~ 106 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR------------------------------ECIRTFK 106 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh------------------------------hhhheee
Confidence 3335567999999999999987 78999999999999999655 3567899
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
.|.+.|..++++. ..++++++|.+|+.|.++.. ..........+..+..+..+..+++++ ..|.|||.....++.
T Consensus 107 AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcG--e~i~IWD~~R~~Pv~ 181 (433)
T KOG0268|consen 107 AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCG--EQIDIWDEQRDNPVS 181 (433)
T ss_pred cccCceeeEEecc--cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccC--ceeeecccccCCccc
Confidence 9999999999976 57889999999999998763 333344445566666666666777654 469999999888888
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.++... ..+.++.|+|-. ..|+++..|+.|.+||++++.++..+... ..-..++|+|+
T Consensus 182 smswG~----------Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-----------mRTN~IswnPe 240 (433)
T KOG0268|consen 182 SMSWGA----------DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-----------MRTNTICWNPE 240 (433)
T ss_pred eeecCC----------CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-----------ccccceecCcc
Confidence 887765 678999999954 46777779999999999999998887764 34678999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+-.+++++ +|..++.||++........ ..+| ...|.++.|||.|+-+++||.|.+|+||..+.+..
T Consensus 241 afnF~~a~---------ED~nlY~~DmR~l~~p~~v----~~dh-vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 241 AFNFVAAN---------EDHNLYTYDMRNLSRPLNV----HKDH-VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred ccceeecc---------ccccceehhhhhhcccchh----hccc-ceeEEEeccCCCcchhccccccceEEEeecCCCcc
Confidence 87888887 8999999999876554333 4688 89999999999999999999999999999987765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l 645 (762)
..... ...-..|.++.||.|.+++++|+ |+.|++|.....+.+..+
T Consensus 307 RdiYh----------tkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~ 353 (433)
T KOG0268|consen 307 RDIYH----------TKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVI 353 (433)
T ss_pred hhhhh----------HhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCC
Confidence 54431 11246789999999999999999 899999988766555444
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=228.13 Aligned_cols=288 Identities=17% Similarity=0.169 Sum_probs=243.9
Q ss_pred eeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 230 VTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
.+..|.+.+..+.|-++...|+ .|.|..|.+|+....+. .....+.+..+.|+++.|.++++++++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---ELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---hhhhhhhccCCCcceeeecCCCceEEeecCCCceeee
Confidence 4556899999999999988887 56899999999988774 2336677888899999999999999999999999999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
++... +...++.+|.+.|+++.|......+++|+.|.+|++||+....+.
T Consensus 247 nvd~~------------------------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~ 296 (459)
T KOG0288|consen 247 NVDSL------------------------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCS 296 (459)
T ss_pred eccch------------------------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhee
Confidence 98665 345789999999999999887777999999999999999998886
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
...-....+..++.+ ...++++..|+.|++||.++..+......+ +.|.++..++++..|.+++.|.
T Consensus 297 kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-----------g~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 297 KTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLG-----------GRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred ccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecC-----------cceeeEeeccCCeEEeeecCCC
Confidence 655556666667665 567888888999999999999888887765 6899999999999999999999
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
++.+.|+++......+....... ....+.+.|||++.|+|+|+ .||.|+||++.+++....+..
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~------asDwtrvvfSpd~~YvaAGS---------~dgsv~iW~v~tgKlE~~l~~- 427 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKC------ASDWTRVVFSPDGSYVAAGS---------ADGSVYIWSVFTGKLEKVLSL- 427 (459)
T ss_pred ceeeeecccccEEEEeecccccc------ccccceeEECCCCceeeecc---------CCCcEEEEEccCceEEEEecc-
Confidence 99999999877655554322111 34588999999999999999 889999999999998877753
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.+....|++++|+|.|..|++++.++.+.+|
T Consensus 428 ---s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ---STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ---CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 3313379999999999999999999999998
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=244.83 Aligned_cols=215 Identities=13% Similarity=0.179 Sum_probs=175.5
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|..+.||.++ +|++++.|.+|++|++.... ++..| .|.+
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~------------------------------CL~~F-~Hnd 410 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKE------------------------------CLKVF-SHND 410 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCcc------------------------------eeeEE-ecCC
Confidence 5677999999999999765 89999999999999997654 33444 4999
Q ss_pred ceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
-|+|++|+| |.+++++|+-|+.++||++...+.........-|++++|.|||+..++|+.+|.+++|+....+....+.
T Consensus 411 fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~ 490 (712)
T KOG0283|consen 411 FVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFH 490 (712)
T ss_pred eeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeee
Confidence 999999999 7799999999999999999999888888888999999999999999999999999999999877766543
Q ss_pred cCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
-+...-. ...+ ..|+++.|.|. ...+++.+.|..|+|||.++...+..+..... ...-....|+.||++
T Consensus 491 I~~~~~K-k~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n--------~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 491 IRLHNKK-KKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN--------TSSQISASFSSDGKH 560 (712)
T ss_pred EeeccCc-cccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc--------CCcceeeeEccCCCE
Confidence 3221111 1112 37999999984 34588889999999999988777776654433 223456789999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++ +|..|++|+.....
T Consensus 561 IVs~s---------eDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 561 IVSAS---------EDSWVYIWKNDSFN 579 (712)
T ss_pred EEEee---------cCceEEEEeCCCCc
Confidence 99999 89999999986544
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=221.91 Aligned_cols=307 Identities=16% Similarity=0.181 Sum_probs=239.4
Q ss_pred EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCc
Q 040987 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 107 ~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
...+..|.-+|+||+++|++ ++.++++.|++|.-|++.+|+..+.+-....+...
T Consensus 135 ~~~~~~H~~s~~~vals~d~-------~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~------------------ 189 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDD-------KRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKS------------------ 189 (479)
T ss_pred ceeeccccCcceEEEeeccc-------cceeecCCCcceeeeehhcCcccccccccchhhhh------------------
Confidence 56677899999999999999 78999999999999999999866332111000000
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccC
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPD 265 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~ 265 (762)
.+.........|...+.+++.|+||+|||++ .|..|.||+..+
T Consensus 190 ------------------------------------~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t 233 (479)
T KOG0299|consen 190 ------------------------------------HGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDT 233 (479)
T ss_pred ------------------------------------ccCCCCcccccccceeEEEEEcCCCcEEEecCCCceEEEecCcc
Confidence 0111101113788999999999999999966 688899999999
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
.+.. +.+.+|.+.|.+++|-.....|++++.|+.|++|+++.. ..
T Consensus 234 ~ehv-----~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------------------------------s~ 278 (479)
T KOG0299|consen 234 LEHV-----KVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL------------------------------SY 278 (479)
T ss_pred cchh-----hcccccccceeeeeeecCccceeeeecCCceEEEehhHh------------------------------HH
Confidence 9876 668899999999999988889999999999999998544 34
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+.++.+|.+.|..+.-..-++.+-+|+.|+++++|++.......+..+.+.+.|++|-. ...+++|+.+|.|.+|++..
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecc
Confidence 57889999999999888777777777799999999997666667777888899999854 46788999999999999999
Q ss_pred ceEEEEEccCCCCCCC--CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPL--PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++.+.......... +..++.+|++++..|...++++|+.+|.|++|-+..+-....+..... . .+.|+.
T Consensus 358 Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~------~GfVNs 430 (479)
T KOG0299|consen 358 KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-L------VGFVNS 430 (479)
T ss_pred cCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-c------ccEEEE
Confidence 8888776432221111 112224899999999999999999999999999988732222111111 1 677999
Q ss_pred EEEecCCCeEEEEe
Q 040987 504 VALSQDGSLMSTVD 517 (762)
Q Consensus 504 ~~~sp~g~~l~~~~ 517 (762)
++|+++|+.++++.
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999887775
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-26 Score=223.23 Aligned_cols=193 Identities=13% Similarity=0.207 Sum_probs=144.1
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+..|.|-||+++....+..-....- -....|+++.|.| |...||+++ +|+.|++|.+..+....
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l------~Ngt~vtDl~WdPFD~~rLAVa~---------ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGL------FNGTLVTDLHWDPFDDERLAVAT---------DDGQINLWRLTANGLPE 664 (1012)
T ss_pred CCCceEEEEEcCCCCCCCccccccc------ccCceeeecccCCCChHHeeecc---------cCceEEEEEeccCCCCc
Confidence 4467888888875433221110000 0156699999999 778999998 89999999998765433
Q ss_pred EE--EEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 544 TL--STIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 544 ~~--~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
.. ...++.+| ...|+++.|+| -...|++++.|-+|++||+.+.+....+ .+|.+.|..++|||||
T Consensus 665 ~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l-----------~gHtdqIf~~AWSpdG 732 (1012)
T KOG1445|consen 665 NEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRL-----------VGHTDQIFGIAWSPDG 732 (1012)
T ss_pred ccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhhee-----------ccCcCceeEEEECCCC
Confidence 22 22245788 89999999999 4568999999999999999988776554 4799999999999999
Q ss_pred cEEEEEc-CCeEEEEeCCCCeE-EEEecccc-CceeEEEEeCCCCEEEEEEcCCCC--eEEEEECCCCc
Q 040987 621 SVLAVAA-ETVITLWDPDRNVL-VAVIGETL-TPIMNMSFVGSSEYLVATSWGSKP--QLSVWNMSKLS 684 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~~~~-~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~--~v~vwd~~~~~ 684 (762)
+.+|+.. ||+|++|+..+++. +..-.+.. ..-..+.|.-||++++..+.|... +|.+||..+..
T Consensus 733 r~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~ 801 (1012)
T KOG1445|consen 733 RRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLD 801 (1012)
T ss_pred cceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhcc
Confidence 9999998 99999999987743 33322222 123457888899999999888742 58888877654
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-27 Score=226.04 Aligned_cols=311 Identities=14% Similarity=0.153 Sum_probs=236.3
Q ss_pred eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 230 VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
.+.+|+..|.++++.|.|-.+++| .|..|++||+........-.+.+.......|++++|++.|..+++.+.....+|+
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 566788899999999999999865 7999999999877654334455666677789999999999988888888899999
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
|-.+.+..+...+..... -+..-+||...+++.+|+|+. ..+++++.||++++||+...+.
T Consensus 242 DRdG~~~~e~~KGDQYI~------------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIR------------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred ccCCceeeeeeccchhhh------------------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 987765544332222211 124557899999999999975 5688999999999999987654
Q ss_pred e-c------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE---EEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 388 K-F------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI---IRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 388 ~-~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+ . .....-+++.++|++||++||+|+.||.|.+|+...... ...-..|.. ...|+++.||+|
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~--------g~~Itsi~FS~d 375 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLP--------GQDITSISFSYD 375 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCC--------CCceeEEEeccc
Confidence 2 1 122234789999999999999999999999999865322 222233331 138999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
|++|++-+.|+++++||++..+.... ...... ...-+.++|||+.++|++|....... ..+.+.+||.
T Consensus 376 g~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--------~~~~tdc~FSPd~kli~TGtS~~~~~---~~g~L~f~d~ 444 (641)
T KOG0772|consen 376 GNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--------PFPGTDCCFSPDDKLILTGTSAPNGM---TAGTLFFFDR 444 (641)
T ss_pred cchhhhccCCCceeeeeccccccchhhhcCCCc--------cCCCCccccCCCceEEEecccccCCC---CCceEEEEec
Confidence 99999999999999999987654322 211111 34467889999999999997432222 4568999999
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
.+...++.+.. . ...|..+.|+|.-+.|..++.||++++|=
T Consensus 445 ~t~d~v~ki~i-----~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 445 MTLDTVYKIDI-----S-TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred cceeeEEEecC-----C-CceEEEEeecchhhheeeecCCCceEEEE
Confidence 98888777642 2 55788999999988899999999999863
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=225.70 Aligned_cols=573 Identities=12% Similarity=0.089 Sum_probs=319.4
Q ss_pred ceeEEEEecCCCeEEEEecCCcceee------eecCcccccCCceeecCCC-EEEEEeCCEEEEEEcccceEEeeecCCc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKM------IRGGRSYVSSPPAFSNDVK-RLLVCTSNTVSIFSTSTGLQISSLEGHK 114 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~------~~~h~~~v~~~~~~s~dg~-~la~~~~~~i~iwd~~~~~~~~~l~~h~ 114 (762)
...+||+++.|..|++|.++.+.... ..||.+.+.-++.|.|..+ .|+++..|.++|||+.+++.+..+.+|.
T Consensus 91 ~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h~ 170 (1012)
T KOG1445|consen 91 ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHGSVYITDISTQKTAVELSGHT 170 (1012)
T ss_pred chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCceEEEEEcccCceeecccCCc
Confidence 46799999999999999999433322 3666665444499998543 6777778999999999999999999999
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEe
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSV 193 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (762)
..|.+..|+.|| ++|++++.|+.|+|+|.+ .++.++..+.|..+.... +++...
T Consensus 171 d~vQSa~WseDG-------~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsR------------------v~w~Gn 225 (1012)
T KOG1445|consen 171 DKVQSADWSEDG-------KLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSR------------------VLWAGN 225 (1012)
T ss_pred hhhhccccccCC-------ceEeeecCCcceEEeCCccCCCccccccccccchhhe------------------eeeccc
Confidence 999999999999 799999999999999987 467788888776543321 222221
Q ss_pred eeccccCcCCccCCCCCCccccEEEEecCCcc-ccceeeeccCCCceEEEECCCCCEEEE-E-eCCeEEEEEccCchhhh
Q 040987 194 EDTRETTKSHKKEPRPNTMNGRICKCNLTESR-LAGGVTLAEMKEPQVITISSSGKYFGI-R-KQRKLLIWKVPDVEAER 270 (762)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~la~-~-~~~~i~iwd~~~~~~~~ 270 (762)
-.....++ ...-.-..|++||..... .++......+..+.---|.||.++|.. | .+.++..+.+...+...
T Consensus 226 ~~rlisTG------F~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyL 299 (1012)
T KOG1445|consen 226 WERLISTG------FTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYL 299 (1012)
T ss_pred hhhhhhcc------cchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCCcch
Confidence 11111111 222345689999987643 444555666778888899999998864 3 56677777766443210
Q ss_pred hee-------------------eeeeeccCcCeEEE------------------EEc----CCC----------cEEEEe
Q 040987 271 VVM-------------------RKITLHHTKKLTVL------------------AFH----PTQ----------RIVAAG 299 (762)
Q Consensus 271 ~~~-------------------~~~~~~~~~~v~~~------------------~~s----p~~----------~~l~~~ 299 (762)
... .....+.-..|..+ .|+ |+. .++.
T Consensus 300 s~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWln-- 377 (1012)
T KOG1445|consen 300 SHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLN-- 377 (1012)
T ss_pred hhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceec--
Confidence 000 00000000000000 011 000 0000
Q ss_pred ecCCeEEEEeccCCce-------------e---------------ec--ccccc-cccccccccCCCCcc----------
Q 040987 300 DVTGRILIWRGFGDRT-------------F---------------AT--NDNKM-NLNLMNNEEERPGVR---------- 338 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~-------------~---------------~~--~~~~~-~~~~~~~~~~~~~~~---------- 338 (762)
+.+..+.--.+.-.+. + .. +.+.. .+.......+.+.+.
T Consensus 378 G~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~ 457 (1012)
T KOG1445|consen 378 GTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDY 457 (1012)
T ss_pred CccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcc
Confidence 0001111111100000 0 00 00000 000000000000000
Q ss_pred ---c-----------------CC------ccccceeeeccc----ccee-----EEEEe---c-------------CCCE
Q 040987 339 ---D-----------------ND------DADLCTTWHWHP----SEVS-----VLIFS---S-------------DGAY 367 (762)
Q Consensus 339 ---~-----------------~~------~~~~~~~~~~h~----~~v~-----~~~~s---~-------------~g~~ 367 (762)
. .. ..+......... +.+. ..+|- | ....
T Consensus 458 ~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v 537 (1012)
T KOG1445|consen 458 RPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRV 537 (1012)
T ss_pred cccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccc
Confidence 0 00 000000000000 0000 01110 0 0000
Q ss_pred EEEEecC------CeEEEEecCCCceeccCCCCC---------CeEEEEeCCCCCeEEE--EecCCcEEEEEcCC-ceEE
Q 040987 368 LYSGGKE------GVLVVWQLDTGKKKFLPRIGS---------PLLYFTESPDPSLSSI--SCADNQVHLLKMPS-MEII 429 (762)
Q Consensus 368 l~s~~~d------g~i~~wd~~~~~~~~~~~~~~---------~v~~~~~s~~~~~l~~--~~~d~~i~i~d~~~-~~~~ 429 (762)
..+.+.. |.+.-|.-..|..-....|-. +-.+=-|..+..++++ ++..|.|-||+++. |++.
T Consensus 538 ~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLP 617 (1012)
T KOG1445|consen 538 PLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLP 617 (1012)
T ss_pred cccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCC
Confidence 0011100 111111111111100000000 0111123344555554 34578999999875 2221
Q ss_pred EE-EccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 430 RS-ISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 430 ~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.. +.+.. -...|+.+.|.| |...|+++++||.|++|.+..+............ ...|...|+.+.|+
T Consensus 618 Dgv~p~l~--------Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~---lt~h~eKI~slRfH 686 (1012)
T KOG1445|consen 618 DGVMPGLF--------NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKI---LTIHGEKITSLRFH 686 (1012)
T ss_pred cccccccc--------cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCccee---eecccceEEEEEec
Confidence 11 11111 015789999999 7889999999999999999876543222111111 11237789999999
Q ss_pred cC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
|= ...|++++ .|.+|++||+.+.+....+ .+| .+.|.+++|||||+.+|+.+.||++++|+.++
T Consensus 687 PLAadvLa~as---------yd~Ti~lWDl~~~~~~~~l-----~gH-tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs 751 (1012)
T KOG1445|consen 687 PLAADVLAVAS---------YDSTIELWDLANAKLYSRL-----VGH-TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRS 751 (1012)
T ss_pred chhhhHhhhhh---------ccceeeeeehhhhhhhhee-----ccC-cCceeEEEECCCCcceeeeecCceEEEeCCCC
Confidence 94 56788888 8899999999998877666 689 99999999999999999999999999999987
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C----CeEEEEeCCCCe--EEEE--eccccCceeEEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E----TVITLWDPDRNV--LVAV--IGETLTPIMNMSF 657 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d----~~i~iwd~~~~~--~~~~--l~~~~~~v~~~~~ 657 (762)
++...... .......--.+.|.-||+++++.+ | ..|.+||.++-. .+.+ +..... +.--.+
T Consensus 752 ~e~pv~Eg---------~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~Y 821 (1012)
T KOG1445|consen 752 REQPVYEG---------KGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHY 821 (1012)
T ss_pred CCCccccC---------CCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccCc-cccccc
Confidence 76544331 001123334678888999988765 4 679999987642 3322 221111 222335
Q ss_pred eCCCC-EEEEEEcCCCCeEEEEECCCCce
Q 040987 658 VGSSE-YLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 658 s~dg~-~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+|.. +++++-.|.. |.+|.+-..+.
T Consensus 822 D~Ds~~lfltGKGD~~--v~~yEv~~esP 848 (1012)
T KOG1445|consen 822 DYDSNVLFLTGKGDRF--VNMYEVIYESP 848 (1012)
T ss_pred cCCCceEEEecCCCce--EEEEEecCCCc
Confidence 55654 4555656666 99998865443
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=245.74 Aligned_cols=291 Identities=15% Similarity=0.215 Sum_probs=230.6
Q ss_pred cccceeEEEEecCCCEEEEEe--cCCeEEEEecCCCc-------------eeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 352 HPSEVSVLIFSSDGAYLYSGG--KEGVLVVWQLDTGK-------------KKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~--~dg~i~~wd~~~~~-------------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+...|.++..+|||..+++|+ .|+.+++|+.+.-- .-....|.+.|.|+.|+|||++||+|++|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 345689999999999999999 88999999865311 123456788999999999999999999999
Q ss_pred cEEEEEcCC------------------ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 417 QVHLLKMPS------------------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 417 ~i~i~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.|.||+... .+....+.+|. +.|..++|+|++.++++++.|++|.+||..+.
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~----------~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHD----------SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEecCC----------CccceeccCCCccEEEEecccceEEEEccccc
Confidence 999999872 13556666766 88999999999999999999999999999988
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-cCCCCCc
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-EPHRDAG 557 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~h~~~~ 557 (762)
+.+..+.. | ...|..+.|.|-|+|||+-+ .|++|++|+..+......+..... .+- ...
T Consensus 162 ~~~~vl~~----H------~s~VKGvs~DP~Gky~ASqs---------dDrtikvwrt~dw~i~k~It~pf~~~~~-~T~ 221 (942)
T KOG0973|consen 162 ELLKVLRG----H------QSLVKGVSWDPIGKYFASQS---------DDRTLKVWRTSDWGIEKSITKPFEESPL-TTF 221 (942)
T ss_pred eeeeeeec----c------cccccceEECCccCeeeeec---------CCceEEEEEcccceeeEeeccchhhCCC-cce
Confidence 65555433 3 77799999999999999999 999999999777554444332111 111 345
Q ss_pred eEEEEEcCCCCeEEEEeCC----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC--------C-----
Q 040987 558 ISAVAFHPNRRAAVSSSYG----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD--------G----- 620 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--------g----- 620 (762)
...+.|||||++|++...= .++.|.+-. .|.+...+-+|..++.+++|+|. |
T Consensus 222 f~RlSWSPDG~~las~nA~n~~~~~~~IieR~-----------tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 222 FLRLSWSPDGHHLASPNAVNGGKSTIAIIERG-----------TWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred eeecccCCCcCeecchhhccCCcceeEEEecC-----------CceeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence 7889999999999987431 234454443 66666667789999999999981 1
Q ss_pred c----EEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 621 S----VLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 621 ~----~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
. .+|+|+ |++|.||.....+++..... ....|.+++|+|||..|+.+|.||+ |.+...+..++
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGt--V~~i~Fee~El 359 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGT--VALIHFEEKEL 359 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCe--EEEEEcchHHh
Confidence 1 567788 99999999988888776532 3456999999999999999999998 99999887654
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=203.57 Aligned_cols=282 Identities=17% Similarity=0.223 Sum_probs=221.0
Q ss_pred eeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 276 ITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+.....+.|.+++||| ...++++++.||+||+|+++....+. -+....|.+
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----------------------------~ka~~~~~~ 73 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----------------------------PKAQQSHDG 73 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCccc----------------------------chhhhccCC
Confidence 3344567899999999 55567789999999999996632211 145567999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCC--eEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS--LSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+|.+++|+.||..+++|+.|+++++||+.+++...+..|..+|..+.|-+... .|++|+.|.+++.||.+...++.++
T Consensus 74 PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeee
Confidence 99999999999999999999999999999999999999999999999977655 8999999999999999998888887
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.-.. .+.++..- ..+++++..+..|.+|+++++........... ...+++++..+|...
T Consensus 154 ~LPe-----------RvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpL--------k~Q~R~va~f~d~~~ 212 (347)
T KOG0647|consen 154 QLPE-----------RVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPL--------KWQTRCVACFQDKDG 212 (347)
T ss_pred eccc-----------eeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcc--------cceeeEEEEEecCCc
Confidence 6443 44444433 34788888999999999977643322211111 566899999999998
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
.|.|+ -+|.+.+..+..+ +..+.++.....+.. --.|++++|+|.-..|++++.||++.+||-+..
T Consensus 213 ~alGs---------iEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 213 FALGS---------IEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eEeee---------ecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 89998 7789999988876 333444332111100 125788999999999999999999999999877
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
..+...+ .+..+|++..|+.+|.++|.+
T Consensus 284 ~kLk~s~-----------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 284 TKLKTSE-----------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred hhhhccC-----------cCCCccceeEecCCCCEEEEE
Confidence 6666542 578999999999999999876
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-25 Score=189.49 Aligned_cols=308 Identities=15% Similarity=0.216 Sum_probs=231.9
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
.....|.+++|+|.|.+.|+|+...+.+|-....-.......+ ....+.....+.-+.|.+.|+|
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~he---------------a~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHE---------------AAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccc---------------cccCCCeEEeeeccccCccEEE
Confidence 3455799999999999999999999988875422111100000 0000011123455678999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCc------eeccCCCCCCeEEEEeCCC----CCeEEEEec-CCcEEEEEcCCce
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGK------KKFLPRIGSPLLYFTESPD----PSLSSISCA-DNQVHLLKMPSME 427 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~------~~~~~~~~~~v~~~~~s~~----~~~l~~~~~-d~~i~i~d~~~~~ 427 (762)
.+|+|+|.+|++|+.|.+|++..+.... ...+.-|.+.|..++|-.+ +..|++++. |-.|++-|...|+
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~ 174 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ 174 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC
Confidence 9999999999999999999987654332 2456678889999999433 455665543 5678888888999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
..+.+.+|. +.|.++ ++-++-.+++|+.|.+|++||++-...+..+......- .-....|.+++..
T Consensus 175 ~~~a~sght----------ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~---glessavaav~vd 240 (350)
T KOG0641|consen 175 GFHALSGHT----------GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDG---GLESSAVAAVAVD 240 (350)
T ss_pred cceeecCCc----------ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCC---CcccceeEEEEEC
Confidence 999999998 566554 45568899999999999999998877766654332211 1115679999999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
|.|++|+++. .|....+||++.++.+..+ .+| ...|.++.|||...++.+++.|..|++-|+...
T Consensus 241 psgrll~sg~---------~dssc~lydirg~r~iq~f-----~ph-sadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 241 PSGRLLASGH---------ADSSCMLYDIRGGRMIQRF-----HPH-SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CCcceeeecc---------CCCceEEEEeeCCceeeee-----CCC-ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 9999999998 8899999999999887765 688 999999999999999999999999999999754
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
-. ..++ ..+...|...+..+.|+|..--+++.+ |.++.+|-+.
T Consensus 306 la-~el~------~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 306 LA-HELP------IMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred hh-hcCc------eEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 32 2221 122345788888999999887777777 9999999764
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-27 Score=203.41 Aligned_cols=277 Identities=16% Similarity=0.211 Sum_probs=219.6
Q ss_pred eEEEEecC-CCEEEEEe-------cCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcC
Q 040987 357 SVLIFSSD-GAYLYSGG-------KEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMP 424 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~-------~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~ 424 (762)
+++.|||= .++|+.+. ..|.+.+.++..++-+ ....-...+..++|+++. +.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 56788882 23343322 3488999998643332 233445679999999864 677888899999999965
Q ss_pred C-ceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 425 S-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 425 ~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
. ..++..++.|+ ..|.++.|++ +++.+++++.|++|++|+...+..+.++.. | ...|.
T Consensus 92 ~~s~Pi~~~kEH~----------~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g----h------~~~Iy 151 (311)
T KOG0277|consen 92 MPSKPIHKFKEHK----------REVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG----H------NSCIY 151 (311)
T ss_pred CCCcchhHHHhhh----------hheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC----C------ccEEE
Confidence 4 55777888877 7889999998 556778889999999999988777666433 2 78899
Q ss_pred EEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEE
Q 040987 503 LVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFK 580 (762)
Q Consensus 503 ~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~ 580 (762)
..+|+| ..+.+++++ +|+.+++||++.......+ ..| ...|.++.|+. +...|++|+.|+.|+
T Consensus 152 ~a~~sp~~~nlfas~S---------gd~~l~lwdvr~~gk~~~i-----~ah-~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 152 QAAFSPHIPNLFASAS---------GDGTLRLWDVRSPGKFMSI-----EAH-NSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred EEecCCCCCCeEEEcc---------CCceEEEEEecCCCceeEE-----Eec-cceeEeecccccCCcEEEecCCCceEE
Confidence 999999 467888888 9999999999877554443 568 78999999998 567899999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~ 657 (762)
.||++.-+... ..+.+|.-.|+.+.|||.. .+||+++ |-+++|||...+ .++.+...|..-+..+.|
T Consensus 217 ~wDir~~r~pl----------~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dw 286 (311)
T KOG0277|consen 217 GWDIRNLRTPL----------FELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDW 286 (311)
T ss_pred EEehhhccccc----------eeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecccc
Confidence 99998765332 2356899999999999965 5788888 999999999854 566677789888999999
Q ss_pred eC-CCCEEEEEEcCCCCeEEEEEC
Q 040987 658 VG-SSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 658 s~-dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|+ ++.++|+++.|+. ++||+-
T Consensus 287 s~~~~~~vAs~gWDe~--l~Vw~p 308 (311)
T KOG0277|consen 287 SLFDPGQVASTGWDEL--LYVWNP 308 (311)
T ss_pred ccccCceeeecccccc--eeeecc
Confidence 98 7889999999998 999983
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=217.80 Aligned_cols=282 Identities=15% Similarity=0.202 Sum_probs=226.8
Q ss_pred ccCcCeEEEEEcCCCcE-EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQRI-VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
...+.|.+++|+|...+ +|+.+ .-.+.+|+..+.. ..+.+....+.++
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~------------------------------~~k~~srFk~~v~ 72 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRS------------------------------VRKTFSRFKDVVY 72 (487)
T ss_pred cccCcceeEecCCCCCCceEEec-ccEEEEEecchhh------------------------------hhhhHHhhcccee
Confidence 34568999999996543 44443 4469999976553 2344556778899
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
++.|-.||++|+.|+..|.|+++|..+... ..+..|..++..+.|+|+++ .+++|+.|+.+++||+.+......+.+|
T Consensus 73 s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h 152 (487)
T KOG0310|consen 73 SVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH 152 (487)
T ss_pred EEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC
Confidence 999999999999999999999999555333 35778999999999999665 5667777888999999998887788998
Q ss_pred CCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+ ..|.+.+|+|. +..+++|+.||.|++||++.. ..+.++.. ..+|..+.+-|.|..+
T Consensus 153 t----------DYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-----------g~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 153 T----------DYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-----------GCPVESVLALPSGSLI 211 (487)
T ss_pred c----------ceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC-----------CCceeeEEEcCCCCEE
Confidence 8 89999999995 558899999999999999876 33333322 6789999999999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
|+++ .+.+++||+.++....... ..| ...|+|+.+..++..|++++-|+.+++||+.+.+.....
T Consensus 212 asAg----------Gn~vkVWDl~~G~qll~~~----~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 212 ASAG----------GNSVKVWDLTTGGQLLTSM----FNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred EEcC----------CCeEEEEEecCCceehhhh----hcc-cceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 9995 4699999999665543332 337 889999999999999999999999999998877766655
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
. -.++|.+++.+||++.++.|. ||.+.+-+....
T Consensus 277 ~------------~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 277 K------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred e------------cccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 2 468999999999999999997 998877754443
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-26 Score=203.73 Aligned_cols=306 Identities=15% Similarity=0.151 Sum_probs=218.7
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe-ecCCeEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRIL 306 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~ 306 (762)
..+.+|.+.|++++|+.||++|| ++.|+.|++|++.+.+...-+..+.... -+..+.++|+||.+-++.. -...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEE
Confidence 45678999999999999999999 5689999999999866542222222212 2356889999998865544 4456799
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+|.+...+.=. .. . ..-.......-+.|.-.+..+-...++++|++++.|..|.+|+++ |+
T Consensus 159 vyk~~K~~dG~-----~~------------~-~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 159 VYKLVKKTDGS-----GS------------H-HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred EEEeeecccCC-----CC------------c-ccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 99864432100 00 0 000001112223466677777777888999999999999999999 55
Q ss_pred e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC---c-----eEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 387 K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS---M-----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 387 ~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~---~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
. ..+......-+..+.||+|+++++++..-.+++|..-- | .....+++|+ ..|..++|+++
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~----------saV~~~aFsn~ 289 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ----------SAVLAAAFSNS 289 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch----------hheeeeeeCCC
Confidence 4 34444445567788999999999999999999998632 2 2234567776 89999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCC----ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 458 GGLVALRAENYCIHFYSLLDDR----GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
.+.+++.+.||.+++||+.-.- ....+... ..+..+.......++++|+|+.||.+. ...+++
T Consensus 290 S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g---~~pl~aag~~p~RL~lsP~g~~lA~s~----------gs~l~~ 356 (420)
T KOG2096|consen 290 STRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEG---SAPLHAAGSEPVRLELSPSGDSLAVSF----------GSDLKV 356 (420)
T ss_pred cceeEEEecCCcEEEeeccceEecCCCchHhhcC---CcchhhcCCCceEEEeCCCCcEEEeec----------CCceEE
Confidence 9999999999999999985321 11111111 011111134455899999999999985 358999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
|..++++...++. ..| ...|.+++|+++|+++++++ |..+++..
T Consensus 357 ~~se~g~~~~~~e----~~h-~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 357 FASEDGKDYPELE----DIH-STTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEcccCccchhHH----Hhh-cCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9999988766664 467 89999999999999999998 56777765
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-27 Score=232.30 Aligned_cols=276 Identities=15% Similarity=0.217 Sum_probs=229.3
Q ss_pred eeEEEEecCCCeEEEEecCCcc-------eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecC
Q 040987 43 SFIFAVARSSGLCRTAEYPAVN-------SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEG 112 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~-------~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~ 112 (762)
..||.+|+.||.|++|++.... ...+.-|.+.|.. ++...+|+.|++++ |-+|++|+...+ -+..++..
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVND-iiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~ 115 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVND-IILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRT 115 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhh-HHhhcCCCceEEecCCceEEEeecccCcchhHhhhhc
Confidence 5599999999999999987422 3456889999997 99999999999999 899999999877 58889999
Q ss_pred CccceeEEEE-eCCCCcccceeeeEEeeecCCeEEEEeCCCcce--EEEEEeccceEEEeecccccCCcccCCCCCceEE
Q 040987 113 HKAPVTTVIV-VPASTPATKILSYCWTASLDGTIKYWDFSVPEL--LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFA 189 (762)
Q Consensus 113 h~~~V~~v~~-s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 189 (762)
|..-|.|++. .++. .++||||-|+.|.+||+++|.. +.++..
T Consensus 116 H~DYVkcla~~ak~~-------~lvaSgGLD~~IflWDin~~~~~l~~s~n~---------------------------- 160 (735)
T KOG0308|consen 116 HKDYVKCLAYIAKNN-------ELVASGGLDRKIFLWDINTGTATLVASFNN---------------------------- 160 (735)
T ss_pred ccchheeeeecccCc-------eeEEecCCCccEEEEEccCcchhhhhhccc----------------------------
Confidence 9999999999 6666 6889999999999999998843 322210
Q ss_pred EEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchh
Q 040987 190 YLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEA 268 (762)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~ 268 (762)
+..- ....++...|++++..+.|..+++| ..+.+++||..+.+.
T Consensus 161 --------------------------~t~~---------sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k 205 (735)
T KOG0308|consen 161 --------------------------VTVN---------SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK 205 (735)
T ss_pred --------------------------cccc---------cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc
Confidence 0000 1122677889999999999888855 789999999999885
Q ss_pred hhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccccee
Q 040987 269 ERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348 (762)
Q Consensus 269 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (762)
. ..+.+|+..|.++..++||+.+++++.||+|++||+... .++.+
T Consensus 206 i-----mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ------------------------------rCl~T 250 (735)
T KOG0308|consen 206 I-----MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ------------------------------RCLAT 250 (735)
T ss_pred e-----eeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc------------------------------ceeee
Confidence 4 445599999999999999999999999999999999544 45678
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
+..|...|+++..+|+=.++++|+.||.|+.=|+++.. ...+.....++..+..+.+.+.+-+++.|+.|+-|...
T Consensus 251 ~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 251 YIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred EEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence 89999999999999999999999999999999999843 35566677788888887666666777889999988765
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=216.96 Aligned_cols=278 Identities=15% Similarity=0.173 Sum_probs=227.9
Q ss_pred cccceeEEEEecCCCE-EEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
..+.|.+++|+|...+ +++.+ .-.+.+|+..+.... .+......+.++.|-.||+++++|...|.|++||..+...+
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3467999999995433 44443 357999998887664 47778889999999999999999999999999998877778
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+.+.+|+ .++....|+|++ ..+++|++|+.+++||+.+... .....+| .+.|.+.+|+|
T Consensus 104 R~~~ah~----------apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v----~~~l~~h------tDYVR~g~~~~ 163 (487)
T KOG0310|consen 104 RQLYAHQ----------APVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV----QAELSGH------TDYVRCGDISP 163 (487)
T ss_pred HHHhhcc----------CceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----EEEecCC------cceeEeecccc
Confidence 8888888 778999999954 5677888889999999988763 2233333 88999999999
Q ss_pred CCC-eEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 509 DGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 509 ~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
-.. .+++|+ .||.|++||.+.. ....++ .| ..+|.++.+-|.|..+|+++. ..+++||+.+
T Consensus 164 ~~~hivvtGs---------YDg~vrl~DtR~~~~~v~el------nh-g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~ 226 (487)
T KOG0310|consen 164 ANDHIVVTGS---------YDGKVRLWDTRSLTSRVVEL------NH-GCPVESVLALPSGSLIASAGG-NSVKVWDLTT 226 (487)
T ss_pred CCCeEEEecC---------CCceEEEEEeccCCceeEEe------cC-CCceeeEEEcCCCCEEEEcCC-CeEEEEEecC
Confidence 755 677777 8999999999987 444444 45 779999999999999999885 5699999996
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
|...... ...|...|+|+.+..++..|.+|+ |+.|++||+.+.+.+..+. -.++|.+++.+||++.++
T Consensus 227 G~qll~~----------~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~v 295 (487)
T KOG0310|consen 227 GGQLLTS----------MFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVV 295 (487)
T ss_pred Cceehhh----------hhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee-cccceeeEEecCCCceEE
Confidence 6554433 123889999999999999999999 9999999999999998886 668999999999999999
Q ss_pred EEEcCCCCeEEEEEC
Q 040987 666 ATSWGSKPQLSVWNM 680 (762)
Q Consensus 666 s~~~d~~~~v~vwd~ 680 (762)
.|..+|. +.+=+.
T Consensus 296 iGmsnGl--v~~rr~ 308 (487)
T KOG0310|consen 296 IGMSNGL--VSIRRR 308 (487)
T ss_pred Eecccce--eeeehh
Confidence 9999996 554433
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=227.81 Aligned_cols=284 Identities=11% Similarity=0.095 Sum_probs=210.8
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
-..|.....++|+..+++++.+.....|+..++..+......- ........+.+|.+.|.+++
T Consensus 20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-----------------~~~~~~~~l~GH~~~V~~v~ 82 (493)
T PTZ00421 20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-----------------KLASNPPILLGQEGPIIDVA 82 (493)
T ss_pred eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc-----------------cCCCCCceEeCCCCCEEEEE
Confidence 3456666777787777888888888889876553221110000 00011235789999999999
Q ss_pred Eec-CCCEEEEEecCCeEEEEecCCCc--------eeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEE
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQLDTGK--------KKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~~~~~--------~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
|+| ++++|++++.|++|++||+.++. ...+..|...|.+++|+|++ ++|++++.|+.|++||+.+++...
T Consensus 83 fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~ 162 (493)
T PTZ00421 83 FNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE 162 (493)
T ss_pred EcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE
Confidence 999 88999999999999999997653 23466788899999999986 689999999999999999999988
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+.+|. ..|.+++|+|++.+|++++.|+.|++||+++++.+..+.... ......+.|.+++
T Consensus 163 ~l~~h~----------~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~---------~~~~~~~~w~~~~ 223 (493)
T PTZ00421 163 VIKCHS----------DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA---------SAKSQRCLWAKRK 223 (493)
T ss_pred EEcCCC----------CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC---------CCcceEEEEcCCC
Confidence 888877 789999999999999999999999999999987665543321 1234567888988
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQ 589 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~ 589 (762)
..+++++.. ...|+.|++||++......... ..+....+....|++++++|++++ .|+.|++||+.++..
T Consensus 224 ~~ivt~G~s-----~s~Dr~VklWDlr~~~~p~~~~----~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 224 DLIITLGCS-----KSQQRQIMLWDTRKMASPYSTV----DLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CeEEEEecC-----CCCCCeEEEEeCCCCCCceeEe----ccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce
Confidence 888776421 0147899999998765443321 122144566778999999999887 599999999998765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSAD 619 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d 619 (762)
....+ ..+...+..++|.|.
T Consensus 295 ~~~~~----------~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 295 TFCSS----------YSSVEPHKGLCMMPK 314 (493)
T ss_pred EEEee----------ccCCCCCcceEeccc
Confidence 44321 123456778888884
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=200.53 Aligned_cols=279 Identities=16% Similarity=0.205 Sum_probs=223.8
Q ss_pred eccccceeEEEEec-CCCEEEEEecCCeEEEEecCCC-ce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 350 HWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTG-KK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 350 ~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~-~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
....+.|.+++||| ....++.++.|++|++|++... .. .....+.+++.+++|+.||..+++++.|+.+++||+.+
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 34567899999999 4556668999999999999873 43 35677899999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
++. ..+..|. +.|..+.|-+... .|++|+.|.+|++||++...++.++.... .+.+
T Consensus 104 ~Q~-~~v~~Hd----------~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-----------RvYa 161 (347)
T KOG0647|consen 104 GQV-SQVAAHD----------APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-----------RVYA 161 (347)
T ss_pred CCe-eeeeecc----------cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-----------eeee
Confidence 854 4455555 7889999987655 89999999999999999988888877643 3555
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+.. ....++++. .++.|.+|+++.+...+.... .+- .-.+++++..+|....+.|+-+|.+.|..
T Consensus 162 ~Dv--~~pm~vVat---------a~r~i~vynL~n~~te~k~~~---SpL-k~Q~R~va~f~d~~~~alGsiEGrv~iq~ 226 (347)
T KOG0647|consen 162 ADV--LYPMAVVAT---------AERHIAVYNLENPPTEFKRIE---SPL-KWQTRCVACFQDKDGFALGSIEGRVAIQY 226 (347)
T ss_pred hhc--cCceeEEEe---------cCCcEEEEEcCCCcchhhhhc---Ccc-cceeeEEEEEecCCceEeeeecceEEEEe
Confidence 443 234566666 678999999986654333221 222 55789999999998889999999999999
Q ss_pred cccccccccccCCceeeeeecccC---CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYK---KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
++.+.....+ .++||...... -..|++++|+|.-..|++++ ||+..+||-+....+...+.|..+|++.+|+.
T Consensus 227 id~~~~~~nF---tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~ 303 (347)
T KOG0647|consen 227 IDDPNPKDNF---TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNR 303 (347)
T ss_pred cCCCCccCce---eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecC
Confidence 9987654444 67888754332 23678899999877888776 99999999999888888888999999999999
Q ss_pred CCCEEEEEE
Q 040987 660 SSEYLVATS 668 (762)
Q Consensus 660 dg~~l~s~~ 668 (762)
+|.++|.+.
T Consensus 304 ~G~ifaYA~ 312 (347)
T KOG0647|consen 304 NGSIFAYAL 312 (347)
T ss_pred CCCEEEEEe
Confidence 999998874
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-24 Score=184.84 Aligned_cols=305 Identities=16% Similarity=0.199 Sum_probs=233.8
Q ss_pred eeccCCCceEEEECCCCCEEEEE-eCCeEEEEEcc------Cch----hhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 231 TLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVP------DVE----AERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~------~~~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
.......|.+++|.|.|.+.|++ ...+++|-... .+. ..+....+....|.+.|.|.+|+|+|+++|+|
T Consensus 28 ~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg 107 (350)
T KOG0641|consen 28 ILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG 107 (350)
T ss_pred EecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec
Confidence 34567789999999999999976 45677765433 111 11112234455789999999999999999999
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec----CCCEEEEEe-cC
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS----DGAYLYSGG-KE 374 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~----~g~~l~s~~-~d 374 (762)
+.|.+|++........-.. ..--.+.-|.+.|..++|-. .|..|++++ .|
T Consensus 108 sndk~ik~l~fn~dt~~~~-------------------------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 108 SNDKTIKVLPFNADTCNAT-------------------------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred CCCceEEEEeccccccccc-------------------------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 9999999987644321110 11245677999999999954 346677765 45
Q ss_pred CeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 375 GVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 375 g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..|++-|..+|+.. .+.+|.+.|.++ ++-+|-++++|+.|.+|++||++-..++.++........ ...+.|.+++
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g---lessavaav~ 238 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG---LESSAVAAVA 238 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCC---cccceeEEEE
Confidence 67888888888764 577788888765 355788999999999999999998888777653221110 0115789999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
..|.|++|++|-.|....+||++.++.+..+... ...|.++.|+|...|+.+++ .|..|++
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq~f~ph----------sadir~vrfsp~a~yllt~s---------yd~~ikl 299 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPH----------SADIRCVRFSPGAHYLLTCS---------YDMKIKL 299 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceeeeeCCC----------ccceeEEEeCCCceEEEEec---------ccceEEE
Confidence 9999999999999999999999999887766432 77899999999999999999 8899999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
-|++.. ...++...+...| ...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 300 tdlqgd-la~el~~~vv~eh-kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 300 TDLQGD-LAHELPIMVVAEH-KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eecccc-hhhcCceEEEEec-cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999854 4445555556778 8888889999999889999999999999764
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=209.66 Aligned_cols=282 Identities=15% Similarity=0.201 Sum_probs=240.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..+.++...+....+++|+.|..+.++|...++.. .+.+|...|+.+.++|+...+++++.|..|+||...........
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~ 299 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSS 299 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcccc
Confidence 35777777777678999999999999999988875 57888889999999999999999999999999999877666666
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
..|. ..|+.+..+|.|.|+++++.|++..+.|++++..+........ ...+++.+|+|||..
T Consensus 300 ~~h~----------~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s--------~v~~ts~~fHpDgLi 361 (506)
T KOG0289|consen 300 RPHE----------EPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS--------DVEYTSAAFHPDGLI 361 (506)
T ss_pred cccc----------ccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc--------cceeEEeeEcCCceE
Confidence 6655 7899999999999999999999999999999987766544211 456899999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
|+++. .|+.++|||+..+.....+ .+| .++|..++|+.+|-+||++++|+.|++||++.-+....
T Consensus 362 fgtgt---------~d~~vkiwdlks~~~~a~F-----pgh-t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt 426 (506)
T KOG0289|consen 362 FGTGT---------PDGVVKIWDLKSQTNVAKF-----PGH-TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKT 426 (506)
T ss_pred EeccC---------CCceEEEEEcCCccccccC-----CCC-CCceeEEEeccCceEEEEEecCCeEEEEEehhhcccce
Confidence 99999 8999999999998866655 689 99999999999999999999999999999987775555
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC--CCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD--RNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~--~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
+. ......+.++.|.+.|++|+.++ |=.|++++-. +..++..+..|.+..+.+.|..+.++++++|.
T Consensus 427 ~~----------l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 427 IQ----------LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred ee----------ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccc
Confidence 42 11234799999999999999986 7777777644 45677788889889999999999999999999
Q ss_pred CCCCeEEEEEC
Q 040987 670 GSKPQLSVWNM 680 (762)
Q Consensus 670 d~~~~v~vwd~ 680 (762)
|.. ++++.+
T Consensus 497 d~~--l~~~a~ 505 (506)
T KOG0289|consen 497 DAI--LRLYAL 505 (506)
T ss_pred hhh--eEEeec
Confidence 997 877754
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-27 Score=207.76 Aligned_cols=324 Identities=18% Similarity=0.193 Sum_probs=245.3
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
.+.||++.|-. ++-......+.+++ |.+.+||.+++|.++.++.||.+.|+++.|++.+ .+++|++.|++.
T Consensus 143 e~~GHkDGiW~-Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-------~L~lTaSGD~ta 214 (481)
T KOG0300|consen 143 ELEGHKDGIWH-VAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-------LLLLTASGDETA 214 (481)
T ss_pred hhcccccceee-ehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-------ceEEEccCCcch
Confidence 46899999997 77766666888888 7999999999999999999999999999999999 578899999999
Q ss_pred EEEeCCC----cceEE--EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc-cEEE
Q 040987 146 KYWDFSV----PELLK--TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG-RICK 218 (762)
Q Consensus 146 ~vWd~~~----~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~-~i~i 218 (762)
.||...- .+... .....+.+. .+|...+. .. -.-..|| +|++
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e------------~sDe~~~d------------~d-------~~~~sD~~tiRv 263 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEE------------HSDEHNRD------------TD-------SSEKSDGHTIRV 263 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhh------------cccccccc------------cc-------cccccCCceeee
Confidence 9998331 11000 000000000 00000000 00 0000111 1211
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
.-..+.+|.+.|.+..|...|+.++ ++.|.+..+||+++++.. ..+.+|....+.++-+|..++++
T Consensus 264 --------Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v-----~~LtGHd~ELtHcstHptQrLVv 330 (481)
T KOG0300|consen 264 --------PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVV-----NILTGHDSELTHCSTHPTQRLVV 330 (481)
T ss_pred --------eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCcee-----ccccCcchhccccccCCcceEEE
Confidence 1145677999999999999999887 557999999999999977 88999999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+.+.|-+.++||+...- ..+..|+||.+.|+++.|..|. .+++++.|.+|
T Consensus 331 TsSrDtTFRLWDFReaI-----------------------------~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTv 380 (481)
T KOG0300|consen 331 TSSRDTTFRLWDFREAI-----------------------------QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTV 380 (481)
T ss_pred EeccCceeEeccchhhc-----------------------------ceeeeecccccceeEEEEecCC-ceeecCCCceE
Confidence 99999999999986321 2357899999999999998764 78999999999
Q ss_pred EEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 378 VVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 378 ~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
++||+++.+. +.......++..++.+..+..|+.-..+..|++||++..++. .+. .+....|+..|.+++|..
T Consensus 381 KvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla-RlP-----rtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 381 KVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA-RLP-----RTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred EEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEecCCCccc-cCC-----cccccccceeeeeeeccc
Confidence 9999998765 455667788999999998889998888889999999854432 221 122333457899999987
Q ss_pred CC--CEEEEeecCceEEEEEcCCC
Q 040987 457 DG--GLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 457 ~~--~~l~~~~~dg~i~i~d~~~~ 478 (762)
+. .-|++++.|..+.-|.+...
T Consensus 455 ehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 455 EHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCcccccccccccceeeeeEeccc
Confidence 53 34888899999999988654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=228.32 Aligned_cols=238 Identities=14% Similarity=0.174 Sum_probs=186.6
Q ss_pred eeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 276 ITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++.... ....++..+.+|..
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~-----------------------~~~~~l~~L~gH~~ 126 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ-----------------------NISDPIVHLQGHTK 126 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc-----------------------ccCcceEEecCCCC
Confidence 4678999999999999 88999999999999999986542110 01134567889999
Q ss_pred ceeEEEEecCC-CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 355 EVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.|.+++|+|++ ++|++++.|++|++||+.+++.. .+..|...|.+++|+|+|.+|++++.|+.|++||+++++.+..+
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl 206 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV 206 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence 99999999985 68999999999999999998775 45568889999999999999999999999999999999998888
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.+|.. .....+.|.+++..+++++ .|+.|++||+++........... . ...+....|++
T Consensus 207 ~~H~~---------~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d--~------~~~~~~~~~d~ 269 (493)
T PTZ00421 207 EAHAS---------AKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD--Q------SSALFIPFFDE 269 (493)
T ss_pred ecCCC---------CcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC--C------CCceEEEEEcC
Confidence 88762 2345678889888777654 47899999998754332221110 0 33466678999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
++++|++++. +|+.|++||+..++...... ..+ ...+..++|.|.
T Consensus 270 d~~~L~lggk--------gDg~Iriwdl~~~~~~~~~~----~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 270 DTNLLYIGSK--------GEGNIRCFELMNERLTFCSS----YSS-VEPHKGLCMMPK 314 (493)
T ss_pred CCCEEEEEEe--------CCCeEEEEEeeCCceEEEee----ccC-CCCCcceEeccc
Confidence 9999988863 58999999999887655432 123 556788888885
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=195.78 Aligned_cols=280 Identities=13% Similarity=0.210 Sum_probs=216.4
Q ss_pred EEEEEcC-CCcEEEEe-------ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 285 TVLAFHP-TQRIVAAG-------DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 285 ~~~~~sp-~~~~l~~~-------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.++.||| -.++||.+ ...|.+.|.++...+.+. ....+. -.+.+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~---------------------------e~~s~d-~~D~L 63 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQ---------------------------ECQSYD-TEDGL 63 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeE---------------------------EEEeee-cccce
Confidence 5788999 23344433 236889999885443221 112222 34678
Q ss_pred eEEEEecC-CCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 357 SVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..++|+++ .+.+++++.||++++||+..... ..+.+|...|.++.|++ ++..+++++.|++|++|+....+.++++
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf 143 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF 143 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee
Confidence 99999985 46788899999999999654332 45778999999999988 4566778889999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DG 510 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g 510 (762)
.+|. ..|...+|+| ..+.+++++.|+.+++||++.......+..+ ...+.+..|+. +.
T Consensus 144 ~gh~----------~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah----------~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 144 NGHN----------SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAH----------NSEILCCDWSKYNH 203 (311)
T ss_pred cCCc----------cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEec----------cceeEeecccccCC
Confidence 9987 7899999999 5789999999999999999876544444432 56799999988 55
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+.+++++ .|+.|+.||++.-+.+. ..+.+| .-.|+.+.|||. ...|++++.|-+++|||...+..
T Consensus 204 ~vl~Tg~---------vd~~vr~wDir~~r~pl----~eL~gh-~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds 269 (311)
T KOG0277|consen 204 NVLATGG---------VDNLVRGWDIRNLRTPL----FELNGH-GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS 269 (311)
T ss_pred cEEEecC---------CCceEEEEehhhccccc----eeecCC-ceEEEEEecCcchhhHhhhccccceEEecccccchh
Confidence 6777887 89999999999766432 123789 899999999995 56899999999999999975433
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~ 636 (762)
.... ...|..-+..+.||+ ++.++|+.+ |+.++||+.
T Consensus 270 ~~e~----------~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 270 AIET----------VDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhh----------hhccceEEeccccccccCceeeecccccceeeecc
Confidence 2221 235788889999997 567899998 999999984
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-25 Score=208.53 Aligned_cols=281 Identities=17% Similarity=0.209 Sum_probs=236.5
Q ss_pred CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
...+.++...|....+. .+.|..+.++|...++.. ..+.+|...|+.+.|+|+...+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l-----~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQIL-----ATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhh-----hhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence 45678888888755555 557889999999999877 889999999999999999999999999999999997544
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI 393 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~ 393 (762)
. .......|..+|+.+..+|.|.||++++.|++..+.|++++.......+
T Consensus 294 s------------------------------~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~ 343 (506)
T KOG0289|consen 294 S------------------------------EPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD 343 (506)
T ss_pred c------------------------------CccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence 2 2356678999999999999999999999999999999999998654444
Q ss_pred C---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 394 G---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 394 ~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
. -.+++.+|+|||..+.+|..|+.++|||+.++.....|.+|. +.|..++|+.+|-+|+++++|+.|
T Consensus 344 ~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght----------~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 344 ETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHT----------GPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred ccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCC----------CceeEEEeccCceEEEEEecCCeE
Confidence 3 358999999999999999999999999999999999999988 889999999999999999999999
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTI 548 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~ 548 (762)
++||++..+...++.... ...+.++.|.+.|++|+.++ .+-.|++++-.+. .....
T Consensus 414 ~lwDLRKl~n~kt~~l~~---------~~~v~s~~fD~SGt~L~~~g---------~~l~Vy~~~k~~k~W~~~~~---- 471 (506)
T KOG0289|consen 414 KLWDLRKLKNFKTIQLDE---------KKEVNSLSFDQSGTYLGIAG---------SDLQVYICKKKTKSWTEIKE---- 471 (506)
T ss_pred EEEEehhhcccceeeccc---------cccceeEEEcCCCCeEEeec---------ceeEEEEEecccccceeeeh----
Confidence 999999888777776543 23689999999999999997 4445555443322 22222
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
+..| .+..+++.|....+++++++.|..++++.+
T Consensus 472 -~~~~-sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 472 -LADH-SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred -hhhc-ccccceeeecccceEEeeccchhheEEeec
Confidence 2456 778899999999999999999999888754
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=211.31 Aligned_cols=289 Identities=14% Similarity=0.188 Sum_probs=230.3
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCce
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+.|+++.|+|....+++++.|+++++|.++..... .+.-...+|.+..|.|+|. .+++++....++.||+.+.+
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 3467999999999999999999999999988754432 2233456899999999999 88888889999999998876
Q ss_pred EEEE--EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 428 IIRS--ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 428 ~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+. ..++. +..+..+.+++++++|+..+..|.|.+....+++.+..+.. .+.+..++
T Consensus 292 ~~k~~~~~g~e---------~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-----------eG~v~~~~ 351 (514)
T KOG2055|consen 292 VTKLKPPYGVE---------EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-----------EGVVSDFT 351 (514)
T ss_pred cccccCCCCcc---------cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee-----------ccEEeeEE
Confidence 5433 23322 14677889999999999999999999999999998888876 67799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+.|++.|++.+ ++|.|.+||++...+...+.. .| .-.-++++.|+++.+||+|+..|.|.|||.+
T Consensus 352 fsSdsk~l~~~~---------~~GeV~v~nl~~~~~~~rf~D---~G--~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 352 FSSDSKELLASG---------GTGEVYVWNLRQNSCLHRFVD---DG--SVHGTSLCISLNGSYLATGSDSGIVNIYDGN 417 (514)
T ss_pred EecCCcEEEEEc---------CCceEEEEecCCcceEEEEee---cC--ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence 999999998888 889999999999877766643 22 2234678888999999999999999999976
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccc---cCceeEEEEeC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGET---LTPIMNMSFVG 659 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~---~~~v~~~~~s~ 659 (762)
+...-...+ +......-...|++|.|+||+++||.++ ...+++-.+.+......+... -+.|++++|||
T Consensus 418 s~~~s~~Pk-----Pik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP 492 (514)
T KOG2055|consen 418 SCFASTNPK-----PIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP 492 (514)
T ss_pred hhhccCCCC-----chhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC
Confidence 543222111 1111222357899999999999999987 688999988877666555432 34499999999
Q ss_pred CCCEEEEEEcCCCCeEEEEECC
Q 040987 660 SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.|.+||.|..+|. |.+|.+.
T Consensus 493 ~sG~lAvGNe~gr--v~l~kL~ 512 (514)
T KOG2055|consen 493 NSGYLAVGNEAGR--VHLFKLH 512 (514)
T ss_pred CCceEEeecCCCc--eeeEeec
Confidence 9999999999998 9999864
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-26 Score=212.07 Aligned_cols=287 Identities=18% Similarity=0.237 Sum_probs=233.1
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..++|+++.|+|....|++++.||.+++|.+.+... ..++.+.-...+|.+.
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N----------------------------~~lqS~~l~~fPi~~a 263 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN----------------------------PKLQSIHLEKFPIQKA 263 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC----------------------------hhheeeeeccCcccee
Confidence 356899999999999999999999999999876532 2345555567789999
Q ss_pred EEecCCC-EEEEEecCCeEEEEecCCCceeccCCC----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 360 IFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRI----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 360 ~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+|.|+|. .+++++....++.||+.+.+...+... ...+.....|+++++|+..+..|.|.+....+++.+..++-
T Consensus 264 ~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 264 EFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred eecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 9999998 899999999999999999887543322 23567788999999999999999999999999999988864
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
. +.|..++|+.|++.|++.+.+|.|++||++....+.++..... ..-+.++.+++|.+||
T Consensus 344 e-----------G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~---------v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 344 E-----------GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS---------VHGTSLCISLNGSYLA 403 (514)
T ss_pred c-----------cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc---------cceeeeeecCCCceEE
Confidence 3 7899999999999999999999999999999988777765332 2257788899999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCC------ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC--CCcEEEEEccc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQN------KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY--GGDFKVWICND 586 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~------~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~ 586 (762)
+|+ ..|.|.|||..+.. ++..+. .- ...|+++.|+||+++||.+|. +..+++--+.+
T Consensus 404 ~GS---------~~GiVNIYd~~s~~~s~~PkPik~~d-----NL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS 468 (514)
T KOG2055|consen 404 TGS---------DSGIVNIYDGNSCFASTNPKPIKTVD-----NL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPS 468 (514)
T ss_pred ecc---------CcceEEEeccchhhccCCCCchhhhh-----hh-heeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence 999 88999999976432 222221 11 568999999999999998875 56788888877
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
......++ . ....-+.++||+|||.|.+||.|. +|.+.+|.+.
T Consensus 469 ~TVFsNfP-----~---~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 469 CTVFSNFP-----T---SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeccCC-----C---CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 66555442 2 123457899999999999999999 8999999864
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-25 Score=229.67 Aligned_cols=280 Identities=15% Similarity=0.213 Sum_probs=240.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+...+.+..|. ..++++++.+++|.+||..++... .+.+|.+.|.++++..-+..+++|+.|.++++||..+|++.
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~ 284 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECT 284 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEE
Confidence 55667788887 458999999999999999998875 37889999999999887899999999999999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
..+.+|. +.+.++... ...+++|+.|.+|++|++.++..+..+.. | ...|.++..+
T Consensus 285 ~~l~gh~----------stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~----h------~~~V~~v~~~-- 340 (537)
T KOG0274|consen 285 HSLQGHT----------SSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG----H------TGPVNCVQLD-- 340 (537)
T ss_pred EEecCCC----------ceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc----c------cccEEEEEec--
Confidence 9999988 666766655 44788889999999999998877766543 2 7889999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc-c
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE-L 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~-~ 588 (762)
+.++++++ .|++|++||+.+++.+..+ .+| ...|.++.+.+. ..+++|+.|++|++||+.+. +
T Consensus 341 ~~~lvsgs---------~d~~v~VW~~~~~~cl~sl-----~gH-~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 341 EPLLVSGS---------YDGTVKVWDPRTGKCLKSL-----SGH-TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRK 404 (537)
T ss_pred CCEEEEEe---------cCceEEEEEhhhceeeeee-----cCC-cceEEEEEecCc-ceEEeeeeccceEeecCCchhh
Confidence 88999999 8899999999999888777 689 999999988765 89999999999999999988 6
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s 666 (762)
+...+ .+|..-+..+.+ .+++|.+++ |++|++||..+++++..+.+ |...|..+++. ...+++
T Consensus 405 c~~tl-----------~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~ 469 (537)
T KOG0274|consen 405 CIHTL-----------QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILC 469 (537)
T ss_pred hhhhh-----------cCCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEE
Confidence 55554 467777766554 677999998 99999999999999999998 67888888887 468899
Q ss_pred EEcCCCCeEEEEECCCCceeeEEE
Q 040987 667 TSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
++.|+. +++||+.++++...+.
T Consensus 470 s~~~~~--~~l~dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 470 SSDDGS--VKLWDLRSGTLIRTLL 491 (537)
T ss_pred EecCCe--eEEEecccCchhhhhh
Confidence 999998 9999999999988773
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.5e-25 Score=229.56 Aligned_cols=244 Identities=13% Similarity=0.121 Sum_probs=184.4
Q ss_pred ecCCCeEEEEecCCcce-eeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEcccce--------EEeeecCCccce
Q 040987 49 ARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTSTGL--------QISSLEGHKAPV 117 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~~~--------~~~~l~~h~~~V 117 (762)
|+.+|.|++|+...... ..+.+|.+.|.+ ++|+|+ +.+||+|+ |++|+|||+.++. ++..+.+|...|
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~-lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILD-LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEE-EEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 55688999998765433 457899999997 999997 78999999 7999999997642 345788999999
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
.+++|+|++. .+|+|++.|++|+|||+.+++.+..+.
T Consensus 129 ~sVaf~P~g~------~iLaSgS~DgtIrIWDl~tg~~~~~i~------------------------------------- 165 (568)
T PTZ00420 129 SIIDWNPMNY------YIMCSSGFDSFVNIWDIENEKRAFQIN------------------------------------- 165 (568)
T ss_pred EEEEECCCCC------eEEEEEeCCCeEEEEECCCCcEEEEEe-------------------------------------
Confidence 9999999985 456899999999999999887554332
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
+...|.+++|+|+|++|+++ .|+.|+|||+.+++.. ..
T Consensus 166 ------------------------------------~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-----~t 204 (568)
T PTZ00420 166 ------------------------------------MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-----SS 204 (568)
T ss_pred ------------------------------------cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-----EE
Confidence 23457889999999999855 6999999999998754 45
Q ss_pred eeccCcCeEE-----EEEcCCCcEEEEeecCC----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 277 TLHHTKKLTV-----LAFHPTQRIVAAGDVTG----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 277 ~~~~~~~v~~-----~~~sp~~~~l~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
+.+|.+.+.+ ..|++++.+|++++.|+ .|+|||+.... .++.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~-----------------------------~pl~ 255 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTT-----------------------------SALV 255 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCC-----------------------------CceE
Confidence 6678776543 34568989999887764 79999987421 1122
Q ss_pred --eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC--CCCCCeEEEEeCCCC
Q 040987 348 --TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP--RIGSPLLYFTESPDP 406 (762)
Q Consensus 348 --~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~--~~~~~v~~~~~s~~~ 406 (762)
.+..+.+.+......++|.++++|+.|++|++|++..+....+. .+..+...++|.|+.
T Consensus 256 ~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 256 TMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEcccc
Confidence 22333333333334556888999999999999999887654332 345677889998864
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-27 Score=211.97 Aligned_cols=286 Identities=12% Similarity=0.155 Sum_probs=229.7
Q ss_pred ceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 346 CTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+..+.+|.+.|.+++=+|.. ..+++|+.||.|++||+.+..+. .+..|.+.|..+++.. ..+++++.|.+|+.|.+
T Consensus 59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~ 136 (433)
T KOG0268|consen 59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI 136 (433)
T ss_pred hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence 45678999999999999976 78999999999999999987775 5777888999999977 67778889999999998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.. .+.+++.+. +.+..+.-+..+..+++++++ |.|||.....++..+... ...+.+
T Consensus 137 ~~-~p~~tilg~-----------s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG----------~Dti~s 192 (433)
T KOG0268|consen 137 DG-PPLHTILGK-----------SVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWG----------ADSISS 192 (433)
T ss_pred cC-Ccceeeecc-----------ccccccccccccccccccCce--eeecccccCCccceeecC----------CCceeE
Confidence 74 466666543 456677777677778887764 999999887777766543 566899
Q ss_pred EEEecCCCe-EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQDGSL-MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp~g~~-l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+.|+|-... |+++. .|+.|.+||++....+..+.. ...-+.++|+|.+--++++++|..++.|
T Consensus 193 vkfNpvETsILas~~---------sDrsIvLyD~R~~~Pl~KVi~-------~mRTN~IswnPeafnF~~a~ED~nlY~~ 256 (433)
T KOG0268|consen 193 VKFNPVETSILASCA---------SDRSIVLYDLRQASPLKKVIL-------TMRTNTICWNPEAFNFVAANEDHNLYTY 256 (433)
T ss_pred EecCCCcchheeeec---------cCCceEEEecccCCccceeee-------eccccceecCccccceeeccccccceeh
Confidence 999997664 45554 899999999999988766643 3455689999988889999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGS 660 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~d 660 (762)
|++.-..... ...+|...|.++.|||-|+-+++|+ |.+|+||.+..+.-...... --..|.++.||.|
T Consensus 257 DmR~l~~p~~----------v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 257 DMRNLSRPLN----------VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD 326 (433)
T ss_pred hhhhhcccch----------hhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence 9976543322 2457889999999999999999999 99999999998754433311 1234999999999
Q ss_pred CCEEEEEEcCCCCeEEEEECCCCce
Q 040987 661 SEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+++++||+|+. |++|.....+.
T Consensus 327 skyi~SGSdd~n--vRlWka~Asek 349 (433)
T KOG0268|consen 327 SKYIISGSDDGN--VRLWKAKASEK 349 (433)
T ss_pred ccEEEecCCCcc--eeeeecchhhh
Confidence 999999999998 99998765433
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=200.06 Aligned_cols=321 Identities=14% Similarity=0.200 Sum_probs=249.6
Q ss_pred eeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
..+.+|...|+.++.......+. ++.|.+.+||.++++.++ ....+|.+.|+++.|++.+.++++++.|++-.|
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-----~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-----ATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-----eeecccccceeeEEeccccceEEEccCCcchHH
Confidence 45678999999999887777666 457999999999999987 778899999999999999999999999999999
Q ss_pred EeccCCceeecc----cccccccccccccCCCCc--ccCCc----cccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 308 WRGFGDRTFATN----DNKMNLNLMNNEEERPGV--RDNDD----ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 308 w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
|...-+-..... ........-..++..... ....+ ..++..+.+|...|.+..|...|+.+++++.|.+-
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTA 296 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTA 296 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccc
Confidence 974222111110 000000000000000000 00111 23556788999999999999999999999999999
Q ss_pred EEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 378 VVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 378 ~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.+||+++++.. .+.+|....+.++-+|..+++++++.|.+.++||++. -..+..|++|. ..|+++.|.
T Consensus 297 nlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt----------dtVTS~vF~ 366 (481)
T KOG0300|consen 297 NLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT----------DTVTSVVFN 366 (481)
T ss_pred eeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccc----------cceeEEEEe
Confidence 99999999986 5788999999999999999999999999999999985 34567788888 789999999
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.|. .+++++.|.+|++||+++... +.++.. ..++..++.+..+..+|.-. .+..|++|
T Consensus 367 ~dd-~vVSgSDDrTvKvWdLrNMRsplATIRt-----------dS~~NRvavs~g~~iIAiPh---------DNRqvRlf 425 (481)
T KOG0300|consen 367 TDD-RVVSGSDDRTVKVWDLRNMRSPLATIRT-----------DSPANRVAVSKGHPIIAIPH---------DNRQVRLF 425 (481)
T ss_pred cCC-ceeecCCCceEEEeeeccccCcceeeec-----------CCccceeEeecCCceEEecc---------CCceEEEE
Confidence 875 588999999999999987643 334333 56789999999999999987 78899999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEeCCCcEEEEEcccc
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~~dg~i~iwd~~~~ 587 (762)
|+...+. ..++...-++| ...|+|++|..+.. -|++++.|..+.=|++...
T Consensus 426 DlnG~Rl-aRlPrtsRqgH-rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 426 DLNGNRL-ARLPRTSRQGH-RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ecCCCcc-ccCCccccccc-ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 9987654 33443345789 88999999986543 4788999999999998754
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=210.15 Aligned_cols=281 Identities=17% Similarity=0.248 Sum_probs=231.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----------------cc--CCCCCCeEEEEeCCCC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----------------FL--PRIGSPLLYFTESPDP 406 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----------------~~--~~~~~~v~~~~~s~~~ 406 (762)
...+..|.-++.+++++|++++.++++.+++|.-|++.+++.. .. ..|...+.+++.|+||
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 5677789999999999999999999999999999999887732 01 1455678999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
++|++|+.|..|.||+.++.+.++.+.+|. +.|.+++|-.....+++++.|+.+++|++.....+.++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr----------~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly- 283 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHR----------GAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLY- 283 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcccccc----------cceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHh-
Confidence 999999999999999999999999999988 899999999988899999999999999998765554432
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
+| +..|..+....-++.+-+++ .|+++++|++..... +++.+| .+.+-|++|-.+
T Consensus 284 ---GH------qd~v~~IdaL~reR~vtVGg---------rDrT~rlwKi~eesq------lifrg~-~~sidcv~~In~ 338 (479)
T KOG0299|consen 284 ---GH------QDGVLGIDALSRERCVTVGG---------RDRTVRLWKIPEESQ------LIFRGG-EGSIDCVAFIND 338 (479)
T ss_pred ---CC------ccceeeechhcccceEEecc---------ccceeEEEeccccce------eeeeCC-CCCeeeEEEecc
Confidence 22 77799998888888888887 899999999954332 235688 889999999854
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-----cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-----YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN- 639 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~- 639 (762)
..+++|+.+|.|.+|++...+.+.... ..|.... .+..+|++++..|...++|+|+ +|.|++|-+..|
T Consensus 339 -~HfvsGSdnG~IaLWs~~KKkplf~~~----~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 339 -EHFVSGSDNGSIALWSLLKKKPLFTSR----LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred -cceeeccCCceEEEeeecccCceeEee----ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCc
Confidence 678999999999999998887765543 0111111 1234899999999999999999 999999999988
Q ss_pred ---eEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 640 ---VLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 640 ---~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
.++..+. -.+-|++++|+++|++|+++-
T Consensus 414 r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 414 RAINLLYSLS-LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred cccceeeecc-cccEEEEEEEccCCCEEEEec
Confidence 4555554 556799999999999777764
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=215.20 Aligned_cols=292 Identities=14% Similarity=0.081 Sum_probs=213.0
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE-EEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL-YSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~ 372 (762)
..+++++.|+.|++||+.+++.. ..+..+. .+..++|+|+++.+ ++++
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~------------------------------~~~~~~~-~~~~l~~~~dg~~l~~~~~ 50 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVT------------------------------RTFPVGQ-RPRGITLSKDGKLLYVCAS 50 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceE------------------------------EEEECCC-CCCceEECCCCCEEEEEEC
Confidence 46788899999999998766432 3444443 36789999999877 5667
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++.|++||..+++..........+..++++|+++.+++++ .++.+++||+.+++.+..+... ..+.+
T Consensus 51 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-----------~~~~~ 119 (300)
T TIGR03866 51 DSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-----------VEPEG 119 (300)
T ss_pred CCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-----------CCcce
Confidence 78999999999887754333334467789999999876654 5789999999988877766532 23577
Q ss_pred EEEeCCCCEEEEeecCc-eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 452 IAFNHDGGLVALRAENY-CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
++|+|++++++++..++ .+.+||..+++....... ...+..++|+|+|+++++++. .++.
T Consensus 120 ~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~dg~~l~~~~~--------~~~~ 180 (300)
T TIGR03866 120 MAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-----------DQRPRFAEFTADGKELWVSSE--------IGGT 180 (300)
T ss_pred EEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-----------CCCccEEEECCCCCEEEEEcC--------CCCE
Confidence 99999999999888764 567789887655443321 223567899999998865542 5789
Q ss_pred EEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKK 608 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
|++||+.+++....+.......+. ......++|+|++++++.+ +.++.+.+||..+++..... .+.
T Consensus 181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~------------~~~ 248 (300)
T TIGR03866 181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL------------LVG 248 (300)
T ss_pred EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE------------EeC
Confidence 999999988765544311000010 1123468899999986553 45678999999877654332 124
Q ss_pred CCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 609 KAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
..+.+++|+|+|++|++++ ++.|.+||+++++++..++.. ...+.++|+|
T Consensus 249 ~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 249 QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 5788999999999998864 899999999999999988755 4458888875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=193.72 Aligned_cols=243 Identities=14% Similarity=0.201 Sum_probs=203.8
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCC--eEEEEecCCcEEEE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPS--LSSISCADNQVHLL 421 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~ 421 (762)
+...+..|.+.|++++. ++.++++|+.|-+|++||+.+.... .+..|.+.|+++.|.++-. .|++++.||.|.+|
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 45677889999999998 5889999999999999999987764 5777889999999998765 89999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+.....++..+++|. +.|+.++++|.+++-++.+.|+.+++||+-.++.-..+.. ....
T Consensus 113 ~~~~W~~~~slK~H~----------~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L-----------~~~a 171 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHK----------GQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL-----------KNKA 171 (362)
T ss_pred EcCCeEEeeeecccc----------cccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-----------CCcc
Confidence 999999999999998 7799999999999999999999999999998876655443 2335
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
+.+.|+|.|.+++.+. ...|-+|.+++......+.. +..+.++.|- ++..|++|..|+.|.+
T Consensus 172 t~v~w~~~Gd~F~v~~----------~~~i~i~q~d~A~v~~~i~~-------~~r~l~~~~l-~~~~L~vG~d~~~i~~ 233 (362)
T KOG0294|consen 172 TLVSWSPQGDHFVVSG----------RNKIDIYQLDNASVFREIEN-------PKRILCATFL-DGSELLVGGDNEWISL 233 (362)
T ss_pred eeeEEcCCCCEEEEEe----------ccEEEEEecccHhHhhhhhc-------cccceeeeec-CCceEEEecCCceEEE
Confidence 5699999999888885 35899999998776555432 3356677765 5678899999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEE--cCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF--SADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
||.++...... +.+|..+|-++.+ .|++.+|++++ ||.|+|||++..
T Consensus 234 ~D~ds~~~~~~-----------~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 234 KDTDSDTPLTE-----------FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eccCCCcccee-----------eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 99988554444 3579999999884 46788999998 999999999865
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=194.15 Aligned_cols=321 Identities=15% Similarity=0.178 Sum_probs=239.5
Q ss_pred eeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.+...|.+.|+++...+ .|+++++|+.||.|.+||++.....+...-.... .-.-....-.+|.
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~---------------~c~v~~~h~~~Hk 101 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH---------------KCIVAKQHENGHK 101 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceehe---------------eeeccccCCccce
Confidence 45667899999999988 7899999999999999999765422211000000 0000112335688
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCC---CeEEEEecCCcEEEEEcCCceEE
Q 040987 354 SEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP---SLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 354 ~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
-.|..+.|-| |...+.+++.|.++++||..+.+.......++.|++-++||-. -++++|..+-.|++.|+.+|...
T Consensus 102 y~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 102 YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred eeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 8999999988 5568889999999999999999988888889999999999843 46788888899999999999999
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+++.+|. +.|.++.|+|...+ |++|+.||.|++||++...
T Consensus 182 H~LsGHr----------~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----------------------------- 222 (397)
T KOG4283|consen 182 HTLSGHR----------DGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----------------------------- 222 (397)
T ss_pred eeecccc----------CceEEEEeccCceeEEEecCCCceEEEEEeeccc-----------------------------
Confidence 9999998 88999999998775 6788999999999996421
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+..++.|...++....+++ ...| .+.+.+++|+.|+.++++++.|..+++|+..+|+
T Consensus 223 --------------------gcf~~lD~hn~k~~p~~~~--n~ah-~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 223 --------------------GCFRVLDQHNTKRPPILKT--NTAH-YGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred --------------------ceeEEeecccCccCccccc--cccc-cceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 2233334333333322321 2567 8999999999999999999999999999998876
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.....- .-.++.... .-.+. +. +.+.. ++..-.++.+.++++-+|+.+..+..|...|.+.++-|+=+...++
T Consensus 280 ntl~~~--g~~~~n~~~--~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg 353 (397)
T KOG4283|consen 280 NTLREF--GPIIHNQTT--SFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTG 353 (397)
T ss_pred cccccc--ccccccccc--cceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhcc
Confidence 443221 111111000 01111 22 22222 3333348999999999999999999998889999999999999999
Q ss_pred EcCCCCeEEEEEC
Q 040987 668 SWGSKPQLSVWNM 680 (762)
Q Consensus 668 ~~d~~~~v~vwd~ 680 (762)
..|+. +..|-.
T Consensus 354 ~~d~n--i~~w~p 364 (397)
T KOG4283|consen 354 DMNGN--IYMWSP 364 (397)
T ss_pred ccCCc--cccccc
Confidence 99998 999965
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.2e-24 Score=208.33 Aligned_cols=276 Identities=13% Similarity=0.158 Sum_probs=223.5
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.|.. ++|-|||..|+.+.+..+.|||++.|.++.+|++|.+.|.|++|+.|| +.+|||+.|..|.+|...-.
T Consensus 14 ci~d-~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-------krFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 14 CIND-IAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-------KRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred chhe-eEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCC-------ceeccCCCceeEEEeccccc
Confidence 6776 999999999999999999999999999999999999999999999999 67889999999999985421
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
- .....
T Consensus 86 G--------------------------------------------------------------------------~LkYS 91 (1081)
T KOG1538|consen 86 G--------------------------------------------------------------------------ILKYS 91 (1081)
T ss_pred c--------------------------------------------------------------------------eeeec
Confidence 1 12234
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
|...|.|+.|+|-.+.|++++=...-+|........ .......+.+++|..||++|+.|-.+|+|.+-+-.+.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~-------K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gE 164 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS-------KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGE 164 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchhhccccChhhhhHH-------hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCC
Confidence 778899999999999999888778889988766543 2233467899999999999999999999999875443
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-----CEEEEEecCCeEEEEecCCCcee
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-----AYLYSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-----~~l~s~~~dg~i~~wd~~~~~~~ 388 (762)
+.. .+....+...+|++++|+|.. ..+++.....++.++.+.....-
T Consensus 165 ek~----------------------------~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Ig 216 (1081)
T KOG1538|consen 165 EKV----------------------------KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIG 216 (1081)
T ss_pred cce----------------------------EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeec
Confidence 322 123344577899999999853 46777777788888887654433
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
.....+-...|+.+-++|.+++.|+.|+.+++|--+ |-.+.++.... .+|..++..|+++.++.|+.||
T Consensus 217 k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D----------~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 217 KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGEQD----------SWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred ccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccccc----------eeEEEEEEccCCceEEEEEccC
Confidence 344455567889999999999999999999999755 55555554433 7999999999999999999999
Q ss_pred eEEEEEcCC
Q 040987 469 CIHFYSLLD 477 (762)
Q Consensus 469 ~i~i~d~~~ 477 (762)
+|..|++..
T Consensus 286 TiACyNl~f 294 (1081)
T KOG1538|consen 286 TIACYNLIF 294 (1081)
T ss_pred eeehhhhHH
Confidence 999998754
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=222.64 Aligned_cols=261 Identities=12% Similarity=0.123 Sum_probs=192.8
Q ss_pred eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-CcEEEEeecCCeEEEEeccCCceeeccccccccccccccc
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEE 332 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 332 (762)
..+.+.+|+...... ...+.+|.+.|.+++|+|+ +++||+|+.||.|++||+..+....
T Consensus 52 ~~gvI~L~~~~r~~~-----v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~--------------- 111 (568)
T PTZ00420 52 LIGAIRLENQMRKPP-----VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESV--------------- 111 (568)
T ss_pred ceeEEEeeecCCCce-----EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccc---------------
Confidence 357789998776532 2566799999999999996 7899999999999999986532100
Q ss_pred CCCCcccCCccccceeeeccccceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 333 ERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
.....++..+.+|...|.+++|+|++.. |++++.|++|++||+++++......+...|.+++|+|+|.+|++
T Consensus 112 -------~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 112 -------KEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred -------cccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEE
Confidence 0001234567889999999999999876 46889999999999999887654456678999999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc----eEEEEEcCC-CCceeeEEe
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY----CIHFYSLLD-DRGISEVQV 486 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~-~~~~~~~~~ 486 (762)
++.|+.|++||+++++.+..+.+|..... ...+....|++++.+|++++.++ +|++||++. .+.+.....
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~-----s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~l 259 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGGKN-----TKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSI 259 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCCce-----eEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEe
Confidence 99999999999999999999988873210 01122234568999999988764 799999985 444433322
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
... ...+......++|.++++|. +|+.|++|++..+. ...+.. ..+ ..++.+++|.|.
T Consensus 260 d~~--------~~~L~p~~D~~tg~l~lsGk---------GD~tIr~~e~~~~~-~~~l~~---~~s-~~p~~g~~f~Pk 317 (568)
T PTZ00420 260 DNA--------SAPLIPHYDESTGLIYLIGK---------GDGNCRYYQHSLGS-IRKVNE---YKS-CSPFRSFGFLPK 317 (568)
T ss_pred cCC--------ccceEEeeeCCCCCEEEEEE---------CCCeEEEEEccCCc-EEeecc---ccc-CCCccceEEccc
Confidence 111 23334444456688999998 99999999998763 333322 123 667889999997
Q ss_pred CC
Q 040987 567 RR 568 (762)
Q Consensus 567 ~~ 568 (762)
..
T Consensus 318 r~ 319 (568)
T PTZ00420 318 QI 319 (568)
T ss_pred cc
Confidence 43
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=220.42 Aligned_cols=352 Identities=14% Similarity=0.189 Sum_probs=269.3
Q ss_pred CCCCEEE-EEeCCeEEEEEccCchhhh-heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccc
Q 040987 245 SSGKYFG-IRKQRKLLIWKVPDVEAER-VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNK 322 (762)
Q Consensus 245 pdg~~la-~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 322 (762)
|.+++|. +|.||.|++|+........ .+....+..|.+.|+.++...+++.|++++.|-+|++|+......
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~------- 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT------- 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc-------
Confidence 5677676 5689999999987554321 122355678999999999999999999999999999999865532
Q ss_pred ccccccccccCCCCcccCCccccceeeeccccceeEEEE-ecCCCEEEEEecCCeEEEEecCCCce-----------ecc
Q 040987 323 MNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-SSDGAYLYSGGKEGVLVVWQLDTGKK-----------KFL 390 (762)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s~~g~~l~s~~~dg~i~~wd~~~~~~-----------~~~ 390 (762)
-+..++..|.+.|.|++. .++...+++||-|+.|.+||+.++.. ..+
T Consensus 108 ---------------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 108 ---------------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ---------------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 246788899999999999 77888999999999999999998733 112
Q ss_pred C-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 391 P-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 391 ~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
. ++...+++++.++.|..++.|+..+.+++||.++.+.+..+.+|. ..|..+..++||..+++++.||+
T Consensus 167 ~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHT----------dNVr~ll~~dDGt~~ls~sSDgt 236 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHT----------DNVRVLLVNDDGTRLLSASSDGT 236 (735)
T ss_pred CCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccc----------cceEEEEEcCCCCeEeecCCCce
Confidence 2 556789999999999999999999999999999999999999998 78899999999999999999999
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
|++||+...+++.++..+ ...|.++..+|+-..+.+|+ .|+.|..-|+.+......+-.
T Consensus 237 IrlWdLgqQrCl~T~~vH----------~e~VWaL~~~~sf~~vYsG~---------rd~~i~~Tdl~n~~~~tlick-- 295 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVH----------KEGVWALQSSPSFTHVYSGG---------RDGNIYRTDLRNPAKSTLICK-- 295 (735)
T ss_pred EEeeeccccceeeeEEec----------cCceEEEeeCCCcceEEecC---------CCCcEEecccCCchhheEeec--
Confidence 999999999888887664 55699999999999999999 899999999988533322211
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCC
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET 629 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~ 629 (762)
+ ..+|..+..+...+-+-+++.|+.|+-|..... ..+++.|++....+|.
T Consensus 296 -~---daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~--------------------------~~l~~s~~~~~~~T~~ 345 (735)
T KOG0308|consen 296 -E---DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD--------------------------IALSVSGDLDFFSTDS 345 (735)
T ss_pred -C---CCchhhhhhccccCCceeeeccccceecCCccc--------------------------cccccCCCCCcccccC
Confidence 2 346777777755555567788999999976421 2455555555544455
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
...+++... ..-.++.|. .+|..-+.-.|.+++++-...|. +.+||+-.+...-.|
T Consensus 346 ~~~~~~~~~-tp~~vi~Gg-~ai~k~~mL~dkRhVlTkDa~gn--v~lwDIl~~~~~~d~ 401 (735)
T KOG0308|consen 346 NNHSCDLTN-TPDSVIPGG-AAIKKHAMLNDKRHVLTKDAKGN--VALWDILACVKVEDF 401 (735)
T ss_pred CCccccccC-CCceeccCc-hhhhhhhhhcCcceEeeecCCCC--EEEEEeeeeeehhhc
Confidence 555555432 122223221 23445555667788888877776 888888766555444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-26 Score=213.75 Aligned_cols=286 Identities=16% Similarity=0.241 Sum_probs=232.1
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
.|..-|.++.+|... ++++||+. |.|+|||+.... ...++..+
T Consensus 417 ~HGEvVcAvtIS~~t-------rhVyTgGk-gcVKVWdis~pg------~k~PvsqL----------------------- 459 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-------RHVYTGGK-GCVKVWDISQPG------NKSPVSQL----------------------- 459 (705)
T ss_pred ccCcEEEEEEecCCc-------ceeEecCC-CeEEEeeccCCC------CCCccccc-----------------------
Confidence 488889999999988 78889985 789999997541 11122222
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~ 270 (762)
........++++.++|||+.|++ |.-.++.|||+.....
T Consensus 460 --------------------------------------dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-- 499 (705)
T KOG0639|consen 460 --------------------------------------DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-- 499 (705)
T ss_pred --------------------------------------cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc--
Confidence 01112456778899999998875 4678999999998765
Q ss_pred heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 271 VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.++..+....-...+++.+||.+..+++..||.|.|||+.+. ..++.|+
T Consensus 500 -rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq------------------------------~~Vrqfq 548 (705)
T KOG0639|consen 500 -RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ------------------------------TLVRQFQ 548 (705)
T ss_pred -chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc------------------------------eeeeccc
Confidence 233344444456778999999999999999999999999765 3457899
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+|.+.+.|+.+++||..|-+|+-|.+|+.||+++++......+...|.++.++|++.++++|-.++.+.+......+ ..
T Consensus 549 GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-ky 627 (705)
T KOG0639|consen 549 GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KY 627 (705)
T ss_pred CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ce
Confidence 99999999999999999999999999999999999988777788899999999999999999999999988876432 33
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
.+..|. +-|.++.|.+-|+++++.+.|+.+-.|...-+..+..... ...|.+..+|.|.
T Consensus 628 qlhlhe----------ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE-----------~SsVlsCDIS~dd 686 (705)
T KOG0639|consen 628 QLHLHE----------SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-----------SSSVLSCDISFDD 686 (705)
T ss_pred eecccc----------cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc-----------cCcceeeeeccCc
Confidence 343343 7899999999999999999999999999988876655433 6679999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEe
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
+++++|+ +|..-.+|.+
T Consensus 687 kyIVTGS---------GdkkATVYeV 703 (705)
T KOG0639|consen 687 KYIVTGS---------GDKKATVYEV 703 (705)
T ss_pred eEEEecC---------CCcceEEEEE
Confidence 9999999 7777777765
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.3e-26 Score=194.38 Aligned_cols=251 Identities=18% Similarity=0.243 Sum_probs=205.3
Q ss_pred eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc---eEEeeecCCccceeEEEEeC--CCCcccceeeeEEeee
Q 040987 67 MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG---LQISSLEGHKAPVTTVIVVP--ASTPATKILSYCWTAS 140 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~---~~~~~l~~h~~~V~~v~~s~--~~~~~~~l~~~l~s~s 140 (762)
.-..|++.|.. +.+.--|++||+++ |++|+|+.+..+ +++.+|.||.++|+.++|.. -| .+|||++
T Consensus 6 idt~H~D~IHd-a~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G-------~iLAScs 77 (299)
T KOG1332|consen 6 IDTQHEDMIHD-AQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFG-------TILASCS 77 (299)
T ss_pred hhhhhhhhhhH-hhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccC-------cEeeEee
Confidence 34679999997 88999999999999 899999999755 47889999999999999987 67 7899999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.||.|.||.-.+|+-.+.
T Consensus 78 YDgkVIiWke~~g~w~k~-------------------------------------------------------------- 95 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKA-------------------------------------------------------------- 95 (299)
T ss_pred cCceEEEEecCCCchhhh--------------------------------------------------------------
Confidence 999999999887743221
Q ss_pred cCCccccceeeeccCCCceEEEECCCCC--EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC---C-
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSSGK--YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT---Q- 293 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~- 293 (762)
.....|...|++++|.|.+- .|| +++||.|.|.+.+....- ...++...|.-.|++++|.|- |
T Consensus 96 --------~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w--~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 96 --------YEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW--TTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred --------hhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--cchhhhhccccccceeeecCcCCCcc
Confidence 12345788899999999754 455 458999999998876322 344677899999999999995 5
Q ss_pred ----------cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 294 ----------RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 294 ----------~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.|++|+.|..|+||+...++ +.....+.+|.+.|..++|.|
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~----------------------------w~~e~~l~~H~dwVRDVAwaP 217 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS----------------------------WKLERTLEGHKDWVRDVAWAP 217 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCcc----------------------------hhhhhhhhhcchhhhhhhhcc
Confidence 579999999999999986652 233466999999999999998
Q ss_pred CC----CEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 364 DG----AYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 364 ~g----~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
.- .+|++++.||++.+|..+... ...+...+..+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 218 ~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 218 SVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 54 579999999999999776321 134555778899999999999999999999999997654
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=208.21 Aligned_cols=300 Identities=14% Similarity=0.208 Sum_probs=232.7
Q ss_pred eEEeeecCC-eEEEEeCCCcceEEEEEecc--ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCC
Q 040987 135 YCWTASLDG-TIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNT 211 (762)
Q Consensus 135 ~l~s~s~d~-~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (762)
++.+++.|. .+.+||+.+|...-++++.. +..++.. -....+. ++-.
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~------------l~~~yll------------------saq~ 58 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA------------LNNEYLL------------------SAQL 58 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhh------------hchhhee------------------eecc
Confidence 334455564 49999999999988887652 1111110 0000000 2223
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 290 (762)
....|.+|.+....... ...--.+.+.+++-+|+|.+|++| ..+.|++|.+.+|... .+...|-..|+|+.|+
T Consensus 59 ~rp~l~vw~i~k~~~~~-q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL-----~v~~aHYQ~ITcL~fs 132 (476)
T KOG0646|consen 59 KRPLLHVWEILKKDQVV-QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL-----NVLSAHYQSITCLKFS 132 (476)
T ss_pred cCccccccccCchhhhh-hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH-----HHHHhhccceeEEEEe
Confidence 44578888887666552 344467889999999999999977 8999999999999987 6778999999999999
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC--CEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG--AYL 368 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l 368 (762)
.||.++++|+.||.|.+|.+..--. .. ...+.++...|..|.-+|+++...+.| .+|
T Consensus 133 ~dgs~iiTgskDg~V~vW~l~~lv~--------------a~-------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl 191 (476)
T KOG0646|consen 133 DDGSHIITGSKDGAVLVWLLTDLVS--------------AD-------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARL 191 (476)
T ss_pred CCCcEEEecCCCccEEEEEEEeecc--------------cc-------cCCCccceeeeccCcceeEEEEecCCCccceE
Confidence 9999999999999999998732200 00 011446788999999999999887653 689
Q ss_pred EEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc----------------eEEEEE
Q 040987 369 YSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM----------------EIIRSI 432 (762)
Q Consensus 369 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~----------------~~~~~~ 432 (762)
++++.|.++++||+..+........+..+.+++.+|.+..+++|+.+|.|.+.++... ..+..+
T Consensus 192 ~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~ 271 (476)
T KOG0646|consen 192 YTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL 271 (476)
T ss_pred EEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeee
Confidence 9999999999999999999888888899999999999999999999999998887542 233445
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+|.. +..|++++++-||..|++|+.||.+++||+.+.+.++++... .++|+.+.+.|=
T Consensus 272 ~Gh~~--------~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~----------kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 272 VGHEN--------ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS----------KGPVTNLQINPL 330 (476)
T ss_pred ccccC--------CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh----------ccccceeEeecc
Confidence 55552 138999999999999999999999999999999888777632 567888888664
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=211.57 Aligned_cols=283 Identities=14% Similarity=0.239 Sum_probs=234.4
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee--cccc
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH--WHPS 354 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~ 354 (762)
...|..-|.++++|...+++.+|+ .|.|+|||+...... .++..+. ....
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k---------------------------~PvsqLdcl~rdn 466 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNK---------------------------SPVSQLDCLNRDN 466 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCC---------------------------CccccccccCccc
Confidence 346888899999999999999986 577999998544211 1222222 2345
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.|.++...|||+.|++|+.-.++.|||+....... +....-..++++.+||.+..++++.||.|.|||+.+...++.
T Consensus 467 yiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 467 YIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred ceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeec
Confidence 68899999999999999999999999999876643 222334577889999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
|.+|. ..+.++.+++||..|-+|+-|++|+.||+++++.+..... ...|.++..+|++.
T Consensus 547 fqGht----------DGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-----------~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 547 FQGHT----------DGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-----------SSQIFSLGYCPTGD 605 (705)
T ss_pred ccCCC----------CCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-----------hhhheecccCCCcc
Confidence 99998 7889999999999999999999999999999876655433 56699999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++++|- ..+.+.+......+. +.+ .-| ...|.++.|.+.|+++++.+.|+.+..|...-|..+.
T Consensus 606 WlavGM---------ens~vevlh~skp~k-yql-----hlh-eScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 606 WLAVGM---------ENSNVEVLHTSKPEK-YQL-----HLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred ceeeec---------ccCcEEEEecCCccc-eee-----ccc-ccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence 999998 777888877665443 233 346 8899999999999999999999999999998887766
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
..+ ....|.++.+|.|.++|++|+ |....||.+
T Consensus 670 qsk------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 670 QSK------------ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred ecc------------ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 553 468899999999999999998 888888865
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-23 Score=212.42 Aligned_cols=283 Identities=15% Similarity=0.144 Sum_probs=208.5
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
+.+++++.|+.+++||+.+++..........+..++|+|+++.+ +++..++.+++||..+++....+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-------- 73 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-------- 73 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCC--------
Confidence 56888999999999999988875544444557789999999977 456678999999999988877665432
Q ss_pred ccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 445 YKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+..++++|+++.++++ ..++.+++||+.+.+.+..+.. ...+..++|+|+|++++++..
T Consensus 74 ---~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~----- 134 (300)
T TIGR03866 74 ---DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----------GVEPEGMAVSPDGKIVVNTSE----- 134 (300)
T ss_pred ---CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----------CCCcceEEECCCCCEEEEEec-----
Confidence 34578999999977655 4689999999988765544432 223578999999999998872
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
....+.+||..+.+....+. . ......++|+|++++|+++ ..++.|++||+.+++....+. +...
T Consensus 135 ---~~~~~~~~d~~~~~~~~~~~----~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~---~~~~- 200 (300)
T TIGR03866 135 ---TTNMAHFIDTKTYEIVDNVL----V---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT---FEIP- 200 (300)
T ss_pred ---CCCeEEEEeCCCCeEEEEEE----c---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee---eccc-
Confidence 22457788988765543321 1 2345779999999988655 458999999999886654431 0000
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE-cCCCCeEEEEE
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS-WGSKPQLSVWN 679 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~-~d~~~~v~vwd 679 (762)
...........++|+|+|++++++ . ++.+.+||+++++.+..+. +...+.+++|+|+|++|++++ .++. |++||
T Consensus 201 ~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~--i~v~d 277 (300)
T TIGR03866 201 GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSND--VSVID 277 (300)
T ss_pred ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCe--EEEEE
Confidence 000011234568999999986654 3 7789999999998876654 345789999999999999874 5777 99999
Q ss_pred CCCCceeeEEEEe
Q 040987 680 MSKLSISWSYLLH 692 (762)
Q Consensus 680 ~~~~~~~~~~~~~ 692 (762)
+.+++.+..++..
T Consensus 278 ~~~~~~~~~~~~~ 290 (300)
T TIGR03866 278 VAALKVIKSIKVG 290 (300)
T ss_pred CCCCcEEEEEEcc
Confidence 9999998888754
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-24 Score=191.13 Aligned_cols=279 Identities=18% Similarity=0.177 Sum_probs=223.8
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
..+.|..+.|+|.+..|+.++.||++++||+..........+..++.+++|.+ ...+++|+.||.|+.+|+.++.....
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence 45679999999999999999999999999999998888889999999999977 56788899999999999998765544
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
. .|. ..+.++.+++....+++|+.|++|++||.+.......+.. ...|.++.. .|.
T Consensus 91 g-th~----------~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----------~kkVy~~~v--~g~ 146 (323)
T KOG1036|consen 91 G-THD----------EGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----------GKKVYCMDV--SGN 146 (323)
T ss_pred c-cCC----------CceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----------CceEEEEec--cCC
Confidence 3 333 7889999999888999999999999999987443333322 334666554 567
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
.|++|. .+..+.+||++......+... ..- .-.++++++-|++.-++.++-||.|.+=.++......
T Consensus 147 ~LvVg~---------~~r~v~iyDLRn~~~~~q~re---S~l-kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~ 213 (323)
T KOG1036|consen 147 RLVVGT---------SDRKVLIYDLRNLDEPFQRRE---SSL-KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQ 213 (323)
T ss_pred EEEEee---------cCceEEEEEcccccchhhhcc---ccc-eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHh
Confidence 888877 789999999998776553322 122 5578999999998889999999999886666552221
Q ss_pred cccCCceeeeeecccC---CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEE
Q 040987 592 DLQSSGWSCHAVGSYK---KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~---~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.....+.||...... -.+|++++|+|--..+|+|+ ||.|.+||..+.+.+..+..-...|.+++|+.||..||.+
T Consensus 214 -skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 214 -SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred -hhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence 123366777655432 24788999999988999998 9999999999999999997777779999999999999999
Q ss_pred Ec
Q 040987 668 SW 669 (762)
Q Consensus 668 ~~ 669 (762)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=190.61 Aligned_cols=277 Identities=14% Similarity=0.172 Sum_probs=217.6
Q ss_pred eccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+.|.++.|+|.+..|++++.||.+++|++.... +...-.|..++.
T Consensus 10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-------------------------------l~~~~~~~~plL 58 (323)
T KOG1036|consen 10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-------------------------------LKLKFKHGAPLL 58 (323)
T ss_pred CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-------------------------------hhhheecCCcee
Confidence 3446789999999999999999999999999986552 123334888999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++|.++ ..+++|+-||.|+.+|+.++....+..|..++.++.+++....+++|+.|+.|++||.+.......+...
T Consensus 59 ~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-- 135 (323)
T KOG1036|consen 59 DCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-- 135 (323)
T ss_pred eeeccCC-ceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccC--
Confidence 9999864 5899999999999999999999999999999999999998899999999999999999974444444322
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..|.++..+ ++.|++|+.+..+.+||+++......... .. ....+.++++-|++.-+++++
T Consensus 136 ---------kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~re--S~------lkyqtR~v~~~pn~eGy~~sS 196 (323)
T KOG1036|consen 136 ---------KKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRE--SS------LKYQTRCVALVPNGEGYVVSS 196 (323)
T ss_pred ---------ceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhcc--cc------ceeEEEEEEEecCCCceEEEe
Confidence 356655544 67899999999999999998765432211 11 166799999999888888888
Q ss_pred eeccccCCCceeEEEEEEecCC----CceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQ----NKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
-+|.|.+=.++.. +..+.++........ --+|++++|+|-...||+|+.||.|.+||+.+.+..
T Consensus 197 ---------ieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl 267 (323)
T KOG1036|consen 197 ---------IEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRL 267 (323)
T ss_pred ---------ecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhh
Confidence 6777777666555 333444322111000 136899999999999999999999999999999888
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..+. .....|.+++|+.||..||+++
T Consensus 268 ~q~~-----------~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 268 KQLA-----------KYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred hhcc-----------CCCCceEEEEeccCCCeEEEEe
Confidence 7773 2356799999999999999985
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=213.09 Aligned_cols=284 Identities=18% Similarity=0.222 Sum_probs=231.0
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE--EEeccceEEEeecccccCCcccCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT--IDVKFSIFSMVIPSLLRQPAQSDE 182 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~ 182 (762)
++-+.+.||...|..+++.+.. +++++|.|+++++|+-..++.+.. +..+.......
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--------~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~------------- 63 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--------CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANS------------- 63 (745)
T ss_pred eeEEEeccCccchheeEecCCe--------EEeecCCCCceeeeeccCcccccceecccCcceeecc-------------
Confidence 5678899999999999988776 678999999999999877665543 33332221110
Q ss_pred CCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEE
Q 040987 183 KPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWK 262 (762)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd 262 (762)
++|.+ .+...+ .+|+.|.++.+|.+...... ..+.+|...|.++....++.+|.++.|.++++|.
T Consensus 64 -----i~y~e-~~~~~l--------~~g~~D~~i~v~~~~~~~P~-~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~ 128 (745)
T KOG0301|consen 64 -----ICYAE-SDKGRL--------VVGGMDTTIIVFKLSQAEPL-YTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWR 128 (745)
T ss_pred -----ceecc-ccCcce--------EeecccceEEEEecCCCCch-hhhhccccceeeeecCCcCceEecccccceEEec
Confidence 12221 111111 67899999999999999998 8899999999999999999966677899999998
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
..... ....+|...|.+++.-|++ .+++|+.|.+|++|.-.
T Consensus 129 ~~~l~-------~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~------------------------------- 169 (745)
T KOG0301|consen 129 IGELV-------YSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG------------------------------- 169 (745)
T ss_pred chhhh-------cccCCcchheeeeeecCCC-cEEeccCcceeeeccCC-------------------------------
Confidence 76544 4588999999999999988 78899999999999852
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+.++++.+|.+.|..+++-+++ .+++++.||.|++|++.........+|..-++++....++..++++++|++++||+
T Consensus 170 -~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 170 -TLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred -chhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence 3568999999999999998875 68899999999999996655667889999999999889999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.. ++.+.+.-.. -.++++.+-++|. +++|+.||.|++|.....
T Consensus 248 ~~--e~~q~I~lPt----------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 248 KD--ECVQVITLPT----------TSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred cC--ceEEEEecCc----------cceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 87 6666665443 5788999888886 788899999999988644
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=189.55 Aligned_cols=262 Identities=17% Similarity=0.228 Sum_probs=212.0
Q ss_pred EEEEecCCeEEEEecCCCc--------e-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 368 LYSGGKEGVLVVWQLDTGK--------K-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~--------~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
|+.|+....|.-+++.-.. . .....|.+.+++++. ++.++++|+.|.+|+|||+.....+..+..
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~ 81 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLS 81 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceec
Confidence 5666666666666554322 1 124567788999986 578999999999999999999888888888
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
|. +.|+++.|.++-. .|++|+.||.|.+|+...-..+..+.. | ...|+.++++|.|++
T Consensus 82 Ha----------gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~----H------~~~Vt~lsiHPS~KL 141 (362)
T KOG0294|consen 82 HA----------GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKA----H------KGQVTDLSIHPSGKL 141 (362)
T ss_pred cc----------cceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecc----c------ccccceeEecCCCce
Confidence 77 8999999999765 899999999999999988765555443 3 666999999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
.++.+ +|+.++.||+-.++.-+.+.- ...-+.+.|+|.|.+++.++.++ |-+|.+.+......
T Consensus 142 ALsVg---------~D~~lr~WNLV~Gr~a~v~~L-------~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~ 204 (362)
T KOG0294|consen 142 ALSVG---------GDQVLRTWNLVRGRVAFVLNL-------KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFRE 204 (362)
T ss_pred EEEEc---------CCceeeeehhhcCccceeecc-------CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhh
Confidence 98888 999999999999987666542 23445599999999999888765 99999988877666
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE--eCCCCEEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF--VGSSEYLVATSW 669 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~--s~dg~~l~s~~~ 669 (762)
.. ....+.++.|- ++..|++|. |+.|.+||.+++.+...+.+|..+|.++.+ .|++.+|+|+|.
T Consensus 205 i~------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 205 IE------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred hh------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc
Confidence 53 22456677774 455677776 899999999999999999999999999984 457899999999
Q ss_pred CCCCeEEEEECCCC
Q 040987 670 GSKPQLSVWNMSKL 683 (762)
Q Consensus 670 d~~~~v~vwd~~~~ 683 (762)
||. |++||++..
T Consensus 272 DG~--I~vWd~~~~ 283 (362)
T KOG0294|consen 272 DGF--IKVWDIDME 283 (362)
T ss_pred Cce--EEEEEcccc
Confidence 999 999999877
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=214.19 Aligned_cols=261 Identities=15% Similarity=0.260 Sum_probs=216.0
Q ss_pred eeEEEEecCCCeEEEEecCCcceee---eecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccceEEeeecCCccce
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKM---IRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPV 117 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~---~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V 117 (762)
..+++.++.||++++|+-..++... +.+|.+-|.+.+++-+ |+-.|++|+ |..|.+|......++.+|+||...|
T Consensus 25 ~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snV 104 (745)
T KOG0301|consen 25 GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNV 104 (745)
T ss_pred CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccce
Confidence 5578899999999999998766654 6888888876677774 555577777 8999999999999999999999999
Q ss_pred eEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeec
Q 040987 118 TTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDT 196 (762)
Q Consensus 118 ~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (762)
+|++...++ . ++|||.|.|++||-. +++...+.+|. .|+++.+ -++.. |
T Consensus 105 C~ls~~~~~-------~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~--------l~e~~------~------ 154 (745)
T KOG0301|consen 105 CSLSIGEDG-------T-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVAS--------LPENT------Y------ 154 (745)
T ss_pred eeeecCCcC-------c-eEecccccceEEecc--hhhhcccCCcchheeeeee--------cCCCc------E------
Confidence 999998888 3 779999999999974 57777788888 7777643 01110 0
Q ss_pred cccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee
Q 040987 197 RETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
++|+.|.+|++|.- ++.+ ..+.+|...|+.+++-+++.+|.++.||.|+.|++ ++++. ..
T Consensus 155 -----------vTgsaDKtIklWk~--~~~l-~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l-----~~ 214 (745)
T KOG0301|consen 155 -----------VTGSADKTIKLWKG--GTLL-KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL-----LE 214 (745)
T ss_pred -----------EeccCcceeeeccC--Cchh-hhhccchhheeeeEEecCCCeEeecCCceEEEEec-cCcee-----ee
Confidence 78999999999987 5555 56778999999999999999999999999999999 45544 67
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
..+|+.-|.+++..+++..+++++.|+++++|+.. ++.+.+.-....|
T Consensus 215 ~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--------------------------------e~~q~I~lPttsi 262 (745)
T KOG0301|consen 215 MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--------------------------------ECVQVITLPTTSI 262 (745)
T ss_pred eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--------------------------------ceEEEEecCccce
Confidence 77999999999988888899999999999999974 2345555555689
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+++.+-++|. +++|+.||.|++|..+..+
T Consensus 263 Wsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 263 WSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 9999988884 7788899999999877443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=215.11 Aligned_cols=278 Identities=15% Similarity=0.277 Sum_probs=227.8
Q ss_pred eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
...|..+-+.++|.|+|++|++++.||.|++|+...... ....+.-+...|
T Consensus 9 Ryaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-----------------------------~P~ti~~~g~~v 59 (933)
T KOG1274|consen 9 RYAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-----------------------------EPETIDISGELV 59 (933)
T ss_pred hhhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-----------------------------CCchhhccCcee
Confidence 347889999999999999999999999999998644311 112222266667
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.+++. ++.+|++++.+++|.+|.+..++.. .+....-++.+++++.+|++++.|+.|-.|++.++.+......+.+|
T Consensus 60 ~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh 137 (933)
T KOG1274|consen 60 SSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGH 137 (933)
T ss_pred EEEee--cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeeccc
Confidence 77765 4569999999999999999999886 56677789999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. +.|.++.|+|.+++||+.+-||.|++||+.++.....+.......... ....+..++|+|+|..+++
T Consensus 138 ~----------apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~--~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 138 D----------APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI--LSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred C----------CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc--ccceeeeeeecCCCCeEEe
Confidence 8 889999999999999999999999999999988776665443322111 1345788999999777777
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
.. .|+.|++|+..+....+.+.. ..+ ...+..+.|+|+|+|||+++.||.|.|||.++-.. .
T Consensus 206 ~~---------~d~~Vkvy~r~~we~~f~Lr~---~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~---- 267 (933)
T KOG1274|consen 206 PP---------VDNTVKVYSRKGWELQFKLRD---KLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-H---- 267 (933)
T ss_pred ec---------cCCeEEEEccCCceeheeecc---ccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-c----
Confidence 76 789999999999988877753 334 55599999999999999999999999999987332 1
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.....|++++|.|++.-+-.
T Consensus 268 ----------~~~~~Vc~~aw~p~~n~it~ 287 (933)
T KOG1274|consen 268 ----------EFKRAVCCEAWKPNANAITL 287 (933)
T ss_pred ----------cccceeEEEecCCCCCeeEE
Confidence 13578999999998876644
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-21 Score=199.20 Aligned_cols=475 Identities=13% Similarity=0.143 Sum_probs=309.3
Q ss_pred ecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 110 LEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 110 l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+.|-...=..-.||+|+ ++++... +..|+||...+|++++.+..|. ++.++.+ +.+.....
T Consensus 12 lgg~n~~~~~avfSnD~-------k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~----------~~~~~~~~ 73 (792)
T KOG1963|consen 12 LGGRNGNKSPAVFSNDA-------KFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIV----------LPSSENAN 73 (792)
T ss_pred eccccceecccccccCC-------cEEEEee-CCEEEEEecchHhhhhhcccccCccceeee----------cCCCccce
Confidence 44444444455799999 4554443 5789999999999999999887 7777754 11111111
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCC---CCEEE--EEeC--------
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS---GKYFG--IRKQ-------- 255 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd---g~~la--~~~~-------- 255 (762)
.. ++++.+|.|++||...+..++.... ..++..+.+.|. -...+ ...+
T Consensus 74 ~~-----------------~~~sl~G~I~vwd~~~~~Llkt~~~--~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s 134 (792)
T KOG1963|consen 74 YL-----------------IVCSLDGTIRVWDWSDGELLKTFDN--NLPVHALVYKPAQADISANVYVSVEDYSILTTFS 134 (792)
T ss_pred EE-----------------EEEecCccEEEecCCCcEEEEEEec--CCceeEEEechhHhCccceeEeecccceeeeecc
Confidence 11 4578999999999999998843332 333444333221 11111 1111
Q ss_pred ----CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccc
Q 040987 256 ----RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNE 331 (762)
Q Consensus 256 ----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 331 (762)
+.++-+.+.+... ....+...|.. -.++.+++.|.+.+..- +..+.+|..........
T Consensus 135 ~~~~~q~~~~~~~t~~~---~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~------------- 196 (792)
T KOG1963|consen 135 KKLSKQSSRFVLATFDS---AKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTS------------- 196 (792)
T ss_pred cccccceeeeEeeeccc---cchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeec-------------
Confidence 1111111111110 01112222322 46788888888766654 45688898766431110
Q ss_pred cCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC-----CceeccCCCCCCeEEEEeCCCC
Q 040987 332 EERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-----GKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-----~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
....-..|.-.+++.+++|++++++++..||.|.+|.--. .....+.-|..+|.+++|+++|
T Consensus 197 -------------~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 197 -------------SRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred -------------cchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCC
Confidence 0112233666789999999999999999999999996433 2234566788899999999999
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.+|++|+..+.+.+|.+.+++ .+-+.... +.|..+.++||+.+.+....|+.|.+....+......+..
T Consensus 264 ~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg----------s~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg 332 (792)
T KOG1963|consen 264 AYLLSGGREGVLVLWQLETGK-KQFLPRLG----------SPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG 332 (792)
T ss_pred ceEeecccceEEEEEeecCCC-cccccccC----------CeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence 999999999999999999977 22233222 7889999999999999999999999998866544433332
Q ss_pred ecccccC-CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC------ceE
Q 040987 487 CERNHQP-GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA------GIS 559 (762)
Q Consensus 487 ~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~------~v~ 559 (762)
....... ......-.+.+.++|.-+.++..+ ..+.|.+||+.+...++.+.......+ .+ .++
T Consensus 333 i~~~~~~~k~~~~~l~t~~~idpr~~~~vln~---------~~g~vQ~ydl~td~~i~~~~v~~~n~~-~~~~n~~v~it 402 (792)
T KOG1963|consen 333 IKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG---------HPGHVQFYDLYTDSTIYKLQVCDENYS-DGDVNIQVGIT 402 (792)
T ss_pred ccCCCccccccccccceeEEEcCCCCceeecC---------CCceEEEEeccccceeeeEEEEeeccc-CCcceeEEeee
Confidence 2211000 011145577889999666666665 779999999999988887776444433 33 467
Q ss_pred EEEEcCCCCeEEEEe--------CCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC-Cc-EEEEEc
Q 040987 560 AVAFHPNRRAAVSSS--------YGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD-GS-VLAVAA 627 (762)
Q Consensus 560 ~~~~spd~~~l~~~~--------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d-g~-~la~~~ 627 (762)
.++.+-.|.++++.- .|| .+++|-......-..+ .......|+..+...++.+. .. ..++++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L------~T~I~~PH~~~~vat~~~~~~rs~~~vta~ 476 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFIL------NTKINNPHGNAFVATIFLNPTRSVRCVTAS 476 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEE------EEEEecCCCceeEEEEEecCcccceeEEec
Confidence 788888899998874 233 4778877655443322 12233456666666555542 22 677776
Q ss_pred -CCeEEEEeCCCC----------eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 628 -ETVITLWDPDRN----------VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 628 -d~~i~iwd~~~~----------~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
||.++||-+.+. .|...-.-|..++.+++|+.||..|+.+ .|+. |.+||..+
T Consensus 477 ~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~--Itiwd~~~ 539 (792)
T KOG1963|consen 477 VDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDT--ITIWDYDT 539 (792)
T ss_pred cCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCE--EEEecCCC
Confidence 999999988432 2333333478899999999999655555 5555 99999988
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-23 Score=202.78 Aligned_cols=327 Identities=13% Similarity=0.134 Sum_probs=246.7
Q ss_pred ecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 59 EYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 59 ~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
.+++.....+.||++.|.+ +...|.|.+||+|+ ||+|+||.+.||+++++.. -.+.|.||+|+|.+. + .+||
T Consensus 387 PFPt~~~lvyrGHtg~Vr~-iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~----~-~vLA 459 (733)
T KOG0650|consen 387 PFPTRCALVYRGHTGLVRS-ISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD----L-CVLA 459 (733)
T ss_pred CCcceeeeeEeccCCeEEE-EEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC----c-eeEE
Confidence 3456667778999999998 99999999999999 6999999999999999887 456899999999985 2 2344
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
.+- ...+.|-+..-|..+..-.......+. + .-...++.+.
T Consensus 460 vA~-~~~~~ivnp~~G~~~e~~~t~ell~~~-----------------------~---------------~~~~p~~~~~ 500 (733)
T KOG0650|consen 460 VAV-GECVLIVNPIFGDRLEVGPTKELLASA-----------------------P---------------NESEPDAAVV 500 (733)
T ss_pred EEe-cCceEEeCccccchhhhcchhhhhhcC-----------------------C---------------CccCCcccce
Confidence 444 444777776666433221111110000 0 0012445677
Q ss_pred EEecCCccccc---eeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc
Q 040987 218 KCNLTESRLAG---GVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290 (762)
Q Consensus 218 iwd~~~~~~~~---~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 290 (762)
.|.-....... .....|...|..+.|+..|.|||+. ....|.|.++.....+ .-+....+.|.++.|+
T Consensus 501 ~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ-----~PF~kskG~vq~v~FH 575 (733)
T KOG0650|consen 501 TWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ-----SPFRKSKGLVQRVKFH 575 (733)
T ss_pred eechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc-----CchhhcCCceeEEEec
Confidence 78765433332 4677799999999999999999853 4578999999877654 3444556789999999
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
|...+|++++. ..|++||+... ..++.+......|..++.+|.|..|+.
T Consensus 576 Ps~p~lfVaTq-~~vRiYdL~kq------------------------------elvKkL~tg~kwiS~msihp~GDnli~ 624 (733)
T KOG0650|consen 576 PSKPYLFVATQ-RSVRIYDLSKQ------------------------------ELVKKLLTGSKWISSMSIHPNGDNLIL 624 (733)
T ss_pred CCCceEEEEec-cceEEEehhHH------------------------------HHHHHHhcCCeeeeeeeecCCCCeEEE
Confidence 99999988864 57999998654 234555566678999999999999999
Q ss_pred EecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC------C---ceEEEEEccCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP------S---MEIIRSISGIKLPC 439 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~------~---~~~~~~~~~~~~~~ 439 (762)
++.|+.+..+|++-... ..+..|...+.+++|++.-.++++++.||++.|+.-. . --+++.+.+|....
T Consensus 625 gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 625 GSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred ecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeec
Confidence 99999999999887643 5677888899999999999999999999999988532 1 23456677776321
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
+..|....|+|...+|++++.||+|++|
T Consensus 705 ------~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 705 ------DLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------ccceEeecccCCCceEEecCCCceEEee
Confidence 1357888999999999999999999998
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-23 Score=182.15 Aligned_cols=298 Identities=18% Similarity=0.243 Sum_probs=223.8
Q ss_pred eeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccce------EE---------eeecCCccceeEEEEeCCCCc
Q 040987 66 KMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGL------QI---------SSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~------~~---------~~l~~h~~~V~~v~~s~~~~~ 128 (762)
...+.|.+.|.. +.+.+ .|+|+++|+ ||.|.|||++... ++ ..-.+|.-.|..+.|.|-.+
T Consensus 37 d~~r~HgGsvNs-L~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt- 114 (397)
T KOG4283|consen 37 DFVRPHGGSVNS-LQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT- 114 (397)
T ss_pred ceeccCCCccce-eeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC-
Confidence 345778899997 88876 589999999 8999999997543 11 11247889999999999876
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
..+.|+|.|.+++|||.++-+..-.|+....|.
T Consensus 115 -----GmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VY------------------------------------------ 147 (397)
T KOG4283|consen 115 -----GMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVY------------------------------------------ 147 (397)
T ss_pred -----ceeecccccceEEEeecccceeeEEeecCceee------------------------------------------
Confidence 677899999999999999988776666444333
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCC---CEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCe
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSG---KYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKL 284 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg---~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 284 (762)
+-++||-. -++|++ .+-.|++-|+.++.+. ..+.+|.+.|
T Consensus 148 -------------------------------shamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s-----H~LsGHr~~v 191 (397)
T KOG4283|consen 148 -------------------------------SHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS-----HTLSGHRDGV 191 (397)
T ss_pred -------------------------------hhhcChhhhcceEEEEecCCCcEEEEeccCCcce-----eeeccccCce
Confidence 33444422 255655 5778999999999887 8899999999
Q ss_pred EEEEEcCCCcE-EEEeecCCeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 285 TVLAFHPTQRI-VAAGDVTGRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 285 ~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.++.|+|...+ |++|+.||.|++||++.. ..+...++... ......+.-..|.+.|..++|+
T Consensus 192 laV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~----------------k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 192 LAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT----------------KRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred EEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC----------------ccCccccccccccceeeeeeec
Confidence 99999998774 678999999999998654 22221111000 1112233456799999999999
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceeccCC----CC---CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----IG---SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~---~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.++.++++++.|..+++|+..+|+...... +. +.-..+. +.+...++.--.++.+.++.+-.+..++.+..|
T Consensus 256 Sd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 256 SDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH 334 (397)
T ss_pred ccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc
Confidence 999999999999999999999887521110 11 1111122 344445555556799999999999999999988
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
- ..+.+.++-|+-+...++..|+.+..|-.
T Consensus 335 ~----------k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 335 L----------KRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred c----------ceeeEEeecCchhhhhccccCCccccccc
Confidence 5 78899999999999999999999999976
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=197.84 Aligned_cols=268 Identities=16% Similarity=0.170 Sum_probs=208.4
Q ss_pred CEEEEEecC-CeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 366 AYLYSGGKE-GVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 366 ~~l~s~~~d-g~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
.+++++... ..+.+|.+....... ..-.++++.+++-+|+|.+++.|+..+.+++|.+.+|.++..+..|-
T Consensus 51 ~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHY------- 123 (476)
T KOG0646|consen 51 EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHY------- 123 (476)
T ss_pred hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhc-------
Confidence 566666543 578999987665543 55677899999999999999999999999999999999999998887
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC--CCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD--GSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~ 521 (762)
..|+++.|+-||.++++++.||.|.+|.+..--....- ..........+|.-+|+++...+. ..++++++
T Consensus 124 ---Q~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---- 195 (476)
T KOG0646|consen 124 ---QSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---- 195 (476)
T ss_pred ---cceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-CCccceeeeccCcceeEEEEecCCCccceEEEec----
Confidence 78999999999999999999999999987431100000 000111122345888999988775 45888888
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc--c---cCC
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD--L---QSS 596 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~--~---~~~ 596 (762)
.|.++++||+..+..+..+.. +..+.+++.+|-++.++.|+.+|.|.+.++........ . ...
T Consensus 196 -----~D~t~k~wdlS~g~LLlti~f-------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 196 -----EDRTIKLWDLSLGVLLLTITF-------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred -----CCceEEEEEeccceeeEEEec-------CCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccc
Confidence 899999999999987766543 66899999999999999999999999988765431111 0 001
Q ss_pred ceeeeeecccCCC--CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCC
Q 040987 597 GWSCHAVGSYKKK--AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 597 ~~~~~~~~~~~~~--~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
.-.....+.+|.. .|+|++++-||.+|++|+ ||.|+|||+.+.++++++..-.++|+.+.+.|=
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 1112223445666 999999999999999999 999999999999999999877889999999664
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-23 Score=184.14 Aligned_cols=286 Identities=14% Similarity=0.172 Sum_probs=217.8
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
..|+.|++.|.+||+|+.||.|.|||+.+.. ..+.+.+|..+|++++||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~------------------------------iar~lsaH~~pi~sl~WS~ 75 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR------------------------------IARMLSAHVRPITSLCWSR 75 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc------------------------------hhhhhhccccceeEEEecC
Confidence 7899999999999999999999999997653 3367889999999999999
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
||+.|++++.|..|.+||+..|.+......+.+|..+.|+|.... .++.-.+..-.+.++... .+.+-....+.
T Consensus 76 dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~--~h~~Lp~d~d~--- 150 (405)
T KOG1273|consen 76 DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDP--KHSVLPKDDDG--- 150 (405)
T ss_pred CCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCC--ceeeccCCCcc---
Confidence 999999999999999999999999888899999999999996543 333334555556665542 12211111000
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+....+..|.+.|+++++|...|.+.++|..+.+.+..+.... ...|..+.++..|++|+..+
T Consensus 151 -dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits---------~~~IK~I~~s~~g~~liiNt----- 215 (405)
T KOG1273|consen 151 -DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS---------VQAIKQIIVSRKGRFLIINT----- 215 (405)
T ss_pred -ccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech---------heeeeEEEEeccCcEEEEec-----
Confidence 000122334689999999999999999999999988887776542 25689999999999999998
Q ss_pred cCCCceeEEEEEEecCCCce---------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEccccccccc
Q 040987 523 EGIGSLVCLKFWVSGTQNKE---------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKD 592 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~ 592 (762)
.|..|+.|+++.-... ..++.. -. ...-.+++||.+|.|++.++. ...++||.-..|.+++.
T Consensus 216 ----sDRvIR~ye~~di~~~~r~~e~e~~~K~qDv---VN-k~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 216 ----SDRVIRTYEISDIDDEGRDGEVEPEHKLQDV---VN-KLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred ----CCceEEEEehhhhcccCccCCcChhHHHHHH---Hh-hhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 8999999998732110 111100 01 223467899999999887764 45799999999998887
Q ss_pred ccCCceeeeeecccCC-CCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 593 LQSSGWSCHAVGSYKK-KAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
+. +.. .....+.|+|-...+++-..|.+++|....
T Consensus 288 Lh-----------G~kgE~l~DV~whp~rp~i~si~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 288 LH-----------GTKGEELLDVNWHPVRPIIASIASGVVYIWAVVQ 323 (405)
T ss_pred ec-----------CCchhheeecccccceeeeeeccCCceEEEEeec
Confidence 73 223 566789999988888888789999998653
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=207.03 Aligned_cols=278 Identities=14% Similarity=0.205 Sum_probs=217.6
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..|....+.++|.|+|..|++++.||.|++|+..... . ..+..++..+.+++. ++.+|++++.++.|.+|...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEee--cccceEEeeccceEEEeeCCCCC
Confidence 4688889999999999999999999999999876652 2 223336666777664 45599999999999999998876
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.-..+.... -++..++|+.+|+++|.|+.|-.|++.++.+......+. +| ..+|.++.|+
T Consensus 88 ~~~iL~Rft----------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr----gh------~apVl~l~~~ 147 (933)
T KOG1274|consen 88 EDTILARFT----------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR----GH------DAPVLQLSYD 147 (933)
T ss_pred ccceeeeee----------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeec----cc------CCceeeeeEc
Confidence 544444333 467899999999999999999999999998876554443 33 7889999999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec--CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE--PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|.+++||+.+ .||.|++||++++.....+....-. ......+..++|+|+|..++....|+.|++|+..
T Consensus 148 p~~~fLAvss---------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~ 218 (933)
T KOG1274|consen 148 PKGNFLAVSS---------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRK 218 (933)
T ss_pred CCCCEEEEEe---------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccC
Confidence 9999999999 8999999999988776655432100 0003356789999998888888889999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEE
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYL 664 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l 664 (762)
+......+. ...+...+..++|||.|+|||+++ ||.|.|||+++-+. ......|.+++|-|++..|
T Consensus 219 ~we~~f~Lr---------~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 219 GWELQFKLR---------DKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred Cceeheeec---------ccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCee
Confidence 887766652 233445589999999999999999 99999999998332 2234569999999987766
Q ss_pred EEEEcCC
Q 040987 665 VATSWGS 671 (762)
Q Consensus 665 ~s~~~d~ 671 (762)
-....-|
T Consensus 286 t~~~~~g 292 (933)
T KOG1274|consen 286 TLITALG 292 (933)
T ss_pred EEEeecc
Confidence 5554444
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=182.05 Aligned_cols=292 Identities=13% Similarity=0.139 Sum_probs=216.3
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
..++.|++.|.+|++|+.+|.|.+||+.+... ..+..|-.+|.+++||+||+.|++++.|..|.+||+..|.+++.+.-
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 67899999999999999999999999999876 45778889999999999999999999999999999999999888764
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
. ++|..+.|+|..+..++++ -+..-.+.++..+.... +... +..+......+..|.+.|+++
T Consensus 106 ~-----------spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~-Lp~d-----~d~dln~sas~~~fdr~g~yI 168 (405)
T KOG1273|consen 106 D-----------SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV-LPKD-----DDGDLNSSASHGVFDRRGKYI 168 (405)
T ss_pred c-----------CccceeeeccccCCeEEEEEecCCcEEEEecCCceee-ccCC-----CccccccccccccccCCCCEE
Confidence 3 6889999999544333322 23334444544322111 1110 001112233445799999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc---
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ--- 590 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~--- 590 (762)
.+|. ..|.+.++|..+.+++..+... . ...|..+.++..|++|+.-+.|..||.|++..-...
T Consensus 169 itGt---------sKGkllv~~a~t~e~vas~rit----s-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 169 ITGT---------SKGKLLVYDAETLECVASFRIT----S-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred EEec---------CcceEEEEecchheeeeeeeec----h-heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 9999 8899999999999887766532 1 257889999999999999999999999998631111
Q ss_pred -ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEE
Q 040987 591 -KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 591 -~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s 666 (762)
...+ ..+.+ .--....-.+++||.||.|++.++ ...++||.-..|.+++.|.|.. .....+.|.|-...+++
T Consensus 235 ~e~e~--~~K~q--DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 235 GEVEP--EHKLQ--DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred CCcCh--hHHHH--HHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeee
Confidence 0000 00000 000122335789999999999887 6889999999999999999887 44788999998888888
Q ss_pred EEcCCCCeEEEEECCCCce
Q 040987 667 TSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~ 685 (762)
- ..|. |++|....-+.
T Consensus 311 i-~sg~--v~iw~~~~~en 326 (405)
T KOG1273|consen 311 I-ASGV--VYIWAVVQVEN 326 (405)
T ss_pred c-cCCc--eEEEEeecccc
Confidence 7 3444 99998765443
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-23 Score=181.15 Aligned_cols=256 Identities=13% Similarity=0.152 Sum_probs=203.2
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..+...|.+.|..+...-.|++||+++.|++|+|+..+.+... .++..+.+|.
T Consensus 4 q~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s---------------------------~ll~~L~Gh~ 56 (299)
T KOG1332|consen 4 QTIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS---------------------------KLLAELTGHS 56 (299)
T ss_pred eehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc---------------------------eeeeEecCCC
Confidence 3567789999999998889999999999999999998765432 3568999999
Q ss_pred cceeEEEEec--CCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
++|+.++|.. -|..|++++.||.|.+|.-++++... ...|...+++++|.|. |-.|++++.||.|.|++.++.
T Consensus 57 GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 57 GPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred CCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 9999999965 78999999999999999999886533 4567789999999886 567899999999999998763
Q ss_pred ---eEEEEEccCCCCCCCCCcccCceeeEEEeCC---C-----------CEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 427 ---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD---G-----------GLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 427 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
...+....|. -.|.+++|.|. | +.|++|+.|+.|++|+..++.- .+...++
T Consensus 137 g~w~t~ki~~aH~----------~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w--~~e~~l~ 204 (299)
T KOG1332|consen 137 GGWTTSKIVFAHE----------IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW--KLERTLE 204 (299)
T ss_pred CCccchhhhhccc----------cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch--hhhhhhh
Confidence 1222233444 67899999885 4 5699999999999999988732 2222234
Q ss_pred cccCCCCcceeEEEEEEecCC----CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 490 NHQPGDDVTVVVTLVALSQDG----SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
+| .+.|+.++|.|.- .+||+++ .|+++.||..+......+.. ++..- ...+..+.||+
T Consensus 205 ~H------~dwVRDVAwaP~~gl~~s~iAS~S---------qDg~viIwt~~~e~e~wk~t--ll~~f-~~~~w~vSWS~ 266 (299)
T KOG1332|consen 205 GH------KDWVRDVAWAPSVGLPKSTIASCS---------QDGTVIIWTKDEEYEPWKKT--LLEEF-PDVVWRVSWSL 266 (299)
T ss_pred hc------chhhhhhhhccccCCCceeeEEec---------CCCcEEEEEecCccCccccc--ccccC-CcceEEEEEec
Confidence 44 8899999999964 5799998 89999999887433332221 12233 66899999999
Q ss_pred CCCeEEEEeCCCcEEEEEccc
Q 040987 566 NRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~ 586 (762)
.|+.|+.++.|+.+.+|.-..
T Consensus 267 sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 267 SGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cccEEEEecCCcEEEEEEeCC
Confidence 999999999999999997653
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-23 Score=197.88 Aligned_cols=320 Identities=14% Similarity=0.220 Sum_probs=235.2
Q ss_pred EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCc
Q 040987 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186 (762)
Q Consensus 107 ~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 186 (762)
-..+.||++.|.|+...|.| .+|++|+.||+|+||.+.+|.|++++...
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G-------~wlasGsdDGtvriWEi~TgRcvr~~~~d------------------------ 441 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSG-------EWLASGSDDGTVRIWEIATGRCVRTVQFD------------------------ 441 (733)
T ss_pred eeeEeccCCeEEEEEecCCc-------ceeeecCCCCcEEEEEeecceEEEEEeec------------------------
Confidence 34567999999999999999 79999999999999999999999887532
Q ss_pred eEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCC--EEEEEeCCeEEEEEcc
Q 040987 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK--YFGIRKQRKLLIWKVP 264 (762)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~~~i~iwd~~ 264 (762)
+.|.|++|+|.+. .||++.+..+.|.+..
T Consensus 442 -------------------------------------------------~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~ 472 (733)
T KOG0650|consen 442 -------------------------------------------------SEIRSVAWNPLSDLCVLAVAVGECVLIVNPI 472 (733)
T ss_pred -------------------------------------------------ceeEEEEecCCCCceeEEEEecCceEEeCcc
Confidence 3567788888775 4566665566666655
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe----ecCCeEEEEeccCCceeecccccccccccccccCCCCcccC
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG----DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDN 340 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (762)
-|... ..+ +....|+++ ..++.+..|.-.......
T Consensus 473 ~G~~~-------e~~-----------~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~----------------------- 511 (733)
T KOG0650|consen 473 FGDRL-------EVG-----------PTKELLASAPNESEPDAAVVTWSRASLDELE----------------------- 511 (733)
T ss_pred ccchh-------hhc-----------chhhhhhcCCCccCCcccceeechhhhhhhc-----------------------
Confidence 44321 000 011112222 234567778754322221
Q ss_pred CccccceeeeccccceeEEEEecCCCEEEEEecC---CeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 341 DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 341 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
.-+...-.|...|..+.|+..|.+|++...+ ..|.+.++.....+ .+....+.+.++.|+|...+|+++ ...
T Consensus 512 ---~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVa-Tq~ 587 (733)
T KOG0650|consen 512 ---KGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVA-TQR 587 (733)
T ss_pred ---cceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEE-ecc
Confidence 0123445588899999999999999987654 56889998876654 344567789999999999999887 456
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|+|||+....+++.+.... ..+..++++|.|..|+.++.|+.+..||+.-....... .+.|
T Consensus 588 ~vRiYdL~kqelvKkL~tg~----------kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~---lr~H----- 649 (733)
T KOG0650|consen 588 SVRIYDLSKQELVKKLLTGS----------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---LRLH----- 649 (733)
T ss_pred ceEEEehhHHHHHHHHhcCC----------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH---hhhh-----
Confidence 89999999877766655443 68899999999999999999999999999765433221 1122
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec------CCCceeEEEEEeecCCCCC----ceEEEEEcCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG------TQNKEFTLSTIVYEPHRDA----GISAVAFHPN 566 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~------~~~~~~~~~~~~~~~h~~~----~v~~~~~spd 566 (762)
...+++++|++.-.++++++ .|+++.||.-. ..-.+..++ .+.+| .. .|..+.|+|.
T Consensus 650 -~~avr~Va~H~ryPLfas~s---------dDgtv~Vfhg~VY~Dl~qnpliVPlK--~L~gH-~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 650 -EKAVRSVAFHKRYPLFASGS---------DDGTVIVFHGMVYNDLLQNPLIVPLK--RLRGH-EKTNDLGVLDTIWHPR 716 (733)
T ss_pred -hhhhhhhhhccccceeeeec---------CCCcEEEEeeeeehhhhcCCceEeee--eccCc-eeecccceEeecccCC
Confidence 67799999999999999999 88999887532 222233333 34677 43 3888899999
Q ss_pred CCeEEEEeCCCcEEEE
Q 040987 567 RRAAVSSSYGGDFKVW 582 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iw 582 (762)
...|++++.||+|++|
T Consensus 717 qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 717 QPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEEecCCCceEEee
Confidence 9999999999999998
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=182.71 Aligned_cols=404 Identities=14% Similarity=0.129 Sum_probs=260.8
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEE
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKT 158 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~ 158 (762)
+.|||+|+|+|++.+-.+.|-|.+|-++++.+.- -..|.-+.|..|.. -.|...+.|+.|.+|++...+-...
T Consensus 14 c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~------~ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSC------HILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred eeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccce------eeeeeeeccceEEEEEeecceeEEE
Confidence 6799999999999999999999998876665543 46688899999984 3566778899999999987665444
Q ss_pred EEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCc
Q 040987 159 IDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEP 238 (762)
Q Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v 238 (762)
++. ....+
T Consensus 87 Ide------------------------------------------------------------------------g~agl 94 (447)
T KOG4497|consen 87 IDE------------------------------------------------------------------------GQAGL 94 (447)
T ss_pred ecc------------------------------------------------------------------------CCCcc
Confidence 431 24466
Q ss_pred eEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCcee
Q 040987 239 QVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 239 ~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
.+++|||||+.|. . .-+-.|.+|.+.+.+.. ....-...+..++|+|||++.+..++.......++..
T Consensus 95 s~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~------~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~---- 164 (447)
T KOG4497|consen 95 SSISWSPDGRHILLTSEFDLRITVWSLNTQKGY------LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS---- 164 (447)
T ss_pred eeeeECCCcceEeeeecceeEEEEEEeccceeE------EecccccCceeEEECCCCceeeeeecccHHHHHHHHh----
Confidence 7889999998876 3 35889999999988753 3333455678999999999998887642222222111
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 396 (762)
..++..++.+.-.+-..+.+.|+|||+.|+.-.. --.-.+...+-+-.
T Consensus 165 -----------------------c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~---------~Leykv~aYe~~lG 212 (447)
T KOG4497|consen 165 -----------------------CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDN---------VLEYKVYAYERGLG 212 (447)
T ss_pred -----------------------hHHHHHHHhcCCCcccccCceECCCCcEEEEecc---------hhhheeeeeeeccc
Confidence 1233444555556667788999999987765432 11111112223345
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEc
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSL 475 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~ 475 (762)
+..++|+|.+++|++|+.|+.+++.+--+.+.... ++-.+ -.|-++.+...
T Consensus 213 ~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~e----------------------------flhl~s~~dp~~~~~~k 264 (447)
T KOG4497|consen 213 LKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGE----------------------------FLHLCSYHDPTLHLLEK 264 (447)
T ss_pred eeEEEeccccceEEeeccchhhhhhceeeeeehhh----------------------------hccchhccCchhhhhhh
Confidence 78899999999999999999888866544333322 22111 12222111111
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHR 554 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~ 554 (762)
++.+.+ .-...++.|.|..--.-.. . ..=.+|+... ......++.....+.+
T Consensus 265 e~~~~~----------------ql~~~cLsf~p~~~~a~~~----------~-~se~~YE~~~~pv~~~~lkp~tD~pnP 317 (447)
T KOG4497|consen 265 ETFSIV----------------QLLHHCLSFTPTDLEAHIW----------E-ESETIYEQQMTPVKVHKLKPPTDFPNP 317 (447)
T ss_pred hhcchh----------------hhcccccccCCCccccCcc----------c-cchhhhhhhhcceeeecccCCCCCCCc
Confidence 111111 1112334444422100000 0 0001111110 1111112111122333
Q ss_pred CCceEEEEEcCCCCeEEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 555 DAGISAVAFHPNRRAAVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...+.-++|++|..++++-.+ .+.+.+||++..+....+. ...+|....|.|....|+... ...+
T Consensus 318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi------------Qk~piraf~WdP~~prL~vctg~srL 385 (447)
T KOG4497|consen 318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI------------QKHPIRAFEWDPGRPRLVVCTGKSRL 385 (447)
T ss_pred ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh------------hccceeEEEeCCCCceEEEEcCCceE
Confidence 556788999999999998764 3679999999887766652 468999999999988888776 7789
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
++|.......+..-. ..-.|.++.|.-+|..++-.+.|.
T Consensus 386 Y~W~psg~~~V~vP~-~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 386 YFWAPSGPRVVGVPK-KGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEcCCCceEEecCC-CCceeeeEEecCCCcEEEEEcCCc
Confidence 999998766665443 346799999999999999999997
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=190.91 Aligned_cols=252 Identities=17% Similarity=0.227 Sum_probs=196.5
Q ss_pred ecCcccccCCceeecCCCEEEEE-e-CCEEEEEEcccce----------EEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVC-T-SNTVSIFSTSTGL----------QISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~-~-~~~i~iwd~~~~~----------~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
.-|.+.|.. +..-|....|++. + .+.|.|||..+-. +-.+|.||.+.=.+++|++... .+|
T Consensus 121 i~h~gEVnR-aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~------g~L 193 (422)
T KOG0264|consen 121 INHDGEVNR-ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQE------GTL 193 (422)
T ss_pred ccCCccchh-hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccc------eeE
Confidence 568888987 8888877665554 4 5999999986432 2237889999888899999886 678
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|++|++||+....... ++.
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~------~~~-------------------------------------------------- 217 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKED------KVV-------------------------------------------------- 217 (422)
T ss_pred eeccCCCcEEEEeccccccCC------ccc--------------------------------------------------
Confidence 899999999999997543210 000
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CC
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQ 293 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~ 293 (762)
..+....+|...|..++|++-...| + ++.|+.+.|||++++ .. .......+|.+.|+|++|+| ++
T Consensus 218 ---------~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~~--~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 218 ---------DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-TS--KPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred ---------cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-CC--CCcccccccCCceeEEEeCCCCC
Confidence 0014567789999999999966544 4 668999999999964 21 44577789999999999999 66
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~ 372 (762)
..||+|+.|++|++||++... +++..+.+|...|..+.|+|.. ..|++++
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~-----------------------------~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLN-----------------------------KPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred ceEEeccCCCcEEEeechhcc-----------------------------cCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 688999999999999997653 3568899999999999999964 6788999
Q ss_pred cCCeEEEEecCCCcee---------------ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcC
Q 040987 373 KEGVLVVWQLDTGKKK---------------FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMP 424 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~---------------~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~ 424 (762)
.|+.+.+||+..-... .-.+|...|..+.|+|+..+ |++.+.|+.+.||++.
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999998652211 12356678999999998876 5567789999999986
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=200.36 Aligned_cols=296 Identities=13% Similarity=0.184 Sum_probs=223.8
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee--eccCcCeEEEEEcC-CCcEEEEeecCCeEEEEecc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT--LHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~ 311 (762)
.....+|...++-..|+.+....+.++.+.............. ..-.-.+..+.|.. +.++||+++..|.|.+||+.
T Consensus 39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln 118 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN 118 (839)
T ss_pred ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence 4566788888999999888888889998876554311111110 01112344567765 56799999999999999985
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCcee-c
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKK-F 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~-~ 389 (762)
... ..+.+..+..|...++++.|++. ..+|++|++||+|++||++..+-. .
T Consensus 119 k~~---------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 119 KSI---------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ccc---------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 420 11345688999999999999874 578999999999999999987764 3
Q ss_pred cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 390 LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.......|..+.|+| .+..++++.+.|.+.+||++. .++...+..|. +.|.++.|+|++.+||+|++|
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~----------GpV~c~nwhPnr~~lATGGRD 241 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHN----------GPVLCLNWHPNREWLATGGRD 241 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhccc----------CceEEEeecCCCceeeecCCC
Confidence 445566899999998 467888888999999999986 44556677776 899999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
+.|+|||+.+.+.-....... ..++.++.|-|+.. .||+++.- .|..|+|||++..-.++..
T Consensus 242 K~vkiWd~t~~~~~~~~tInT---------iapv~rVkWRP~~~~hLAtcsmv-------~dtsV~VWDvrRPYIP~~t- 304 (839)
T KOG0269|consen 242 KMVKIWDMTDSRAKPKHTINT---------IAPVGRVKWRPARSYHLATCSMV-------VDTSVHVWDVRRPYIPYAT- 304 (839)
T ss_pred ccEEEEeccCCCccceeEEee---------cceeeeeeeccCccchhhhhhcc-------ccceEEEEeecccccccee-
Confidence 999999998765433332221 56799999999876 56666643 7889999999876554433
Q ss_pred EEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEccccc
Q 040987 547 TIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+..| ...++.++|.. |...+.+++.||++..-.+++..
T Consensus 305 ---~~eH-~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 ---FLEH-TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred ---eecc-CccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 4678 88999999976 45678889999987766555543
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=185.85 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=189.9
Q ss_pred cCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceE----------EEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 390 LPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEI----------IRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
...|.+.|..+.+-|... .+++.+..+.+.|||.....- -..+.+|. ..-.+++|++..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----------~eg~glsWn~~~ 189 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----------KEGYGLSWNRQQ 189 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec----------cccccccccccc
Confidence 456778888888888664 555667788999999875221 12566666 345779999853
Q ss_pred -CEEEEeecCceEEEEEcCCCCce---eeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEE
Q 040987 459 -GLVALRAENYCIHFYSLLDDRGI---SEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 459 -~~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
-.|++++.|+.|++||+...... ........+ |...|..++|++-. .++++++ .|+.+.|
T Consensus 190 ~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~------h~~~VeDV~~h~~h~~lF~sv~---------dd~~L~i 254 (422)
T KOG0264|consen 190 EGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG------HEDVVEDVAWHPLHEDLFGSVG---------DDGKLMI 254 (422)
T ss_pred ceeEeeccCCCcEEEEeccccccCCccccceEEeec------CCcceehhhccccchhhheeec---------CCCeEEE
Confidence 47899999999999999865442 111222223 38889999999954 5666676 8999999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
||++++.... .....+| .+.|.|++|+| ++..||+|+.|++|++||+++-.. +...+.+|...|.
T Consensus 255 wD~R~~~~~~---~~~~~ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~----------~lh~~e~H~dev~ 320 (422)
T KOG0264|consen 255 WDTRSNTSKP---SHSVKAH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK----------PLHTFEGHEDEVF 320 (422)
T ss_pred EEcCCCCCCC---ccccccc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhccc----------CceeccCCCcceE
Confidence 9999631111 1123688 99999999999 567889999999999999987654 2234568999999
Q ss_pred EEEEcCCCc-EEEEEc-CCeEEEEeCCCC--------------eEEEEeccccCceeEEEEeCCCC-EEEEEEcCCCCeE
Q 040987 613 AAAFSADGS-VLAVAA-ETVITLWDPDRN--------------VLVAVIGETLTPIMNMSFVGSSE-YLVATSWGSKPQL 675 (762)
Q Consensus 613 ~~~~s~dg~-~la~~~-d~~i~iwd~~~~--------------~~~~~l~~~~~~v~~~~~s~dg~-~l~s~~~d~~~~v 675 (762)
.+.|||+.. .||+++ |+.+.|||+..- +++..-.||...|..+.|+|+.. .|+|++.|+. +
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--L 398 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI--L 398 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce--E
Confidence 999999765 567666 999999998641 45667789999999999999655 5778899988 9
Q ss_pred EEEECCC
Q 040987 676 SVWNMSK 682 (762)
Q Consensus 676 ~vwd~~~ 682 (762)
.||++..
T Consensus 399 qIW~~s~ 405 (422)
T KOG0264|consen 399 QIWQMAE 405 (422)
T ss_pred EEeeccc
Confidence 9999863
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.7e-21 Score=176.92 Aligned_cols=335 Identities=16% Similarity=0.184 Sum_probs=226.9
Q ss_pred ccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+|.++.|.+++. .+|+|+.|..|++|.+..+..-... ..-+....+..|...|+
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------------~~V~y~s~Ls~H~~aVN 69 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------------MKVEYLSSLSRHTRAVN 69 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------------eeEEEeecccCCcceeE
Confidence 3456899999999776 9999999999999998655322100 11234567889999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecC--------C-----Cc-e---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLD--------T-----GK-K---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~--------~-----~~-~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
.+.|+|+|..|++|+.+|.+.+|... + .+ . +.+..|...+..++|+||+.++++++.|+.+++
T Consensus 70 ~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l 149 (434)
T KOG1009|consen 70 VVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRL 149 (434)
T ss_pred EEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEE
Confidence 99999999999999999999999765 2 10 1 235668889999999999999999999999999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeec----cccc----
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCE----RNHQ---- 492 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~----~~~~---- 492 (762)
||+..|.....+..|. ..+..++|.|-++++++-+.|...+.+.+...+.+....... ..+.
T Consensus 150 ~Dv~~G~l~~~~~dh~----------~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~ 219 (434)
T KOG1009|consen 150 WDVHAGQLLAILDDHE----------HYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGK 219 (434)
T ss_pred EEeccceeEeeccccc----------cccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcc
Confidence 9999999999999887 789999999999999999999877777776655444333110 0000
Q ss_pred -----CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 493 -----PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 493 -----~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
..+........++|+|||.++++...-....+...-+..++|+....+.+... ...- ......+.|+|
T Consensus 220 s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~----lp~~-~k~~lavr~~p-- 292 (434)
T KOG1009|consen 220 STRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAAR----LPSP-KKPALAVRFSP-- 292 (434)
T ss_pred eeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceee----cCCC-CcceEEEEeee--
Confidence 00111334567899999999998762211111101122333332211111000 0011 11222222222
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG- 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~- 646 (762)
..|.+..-. .... +---|-+-.+|+++...|+|||.++-+++..+.
T Consensus 293 ------------Vy~elrp~~-------------------~~~~--~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~n 339 (434)
T KOG1009|consen 293 ------------VYYELRPLS-------------------SEKF--LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDN 339 (434)
T ss_pred ------------eEEEecccc-------------------cccc--ccccccceEEEEeecceEEEeccccccceEEEee
Confidence 123332110 0000 111245556778888899999999988877664
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
-|-..|++++|++||..|+..|.||. ..+-.++..++-
T Consensus 340 ihy~~iTDiaws~dg~~l~vSS~DGy--CS~vtfe~~elg 377 (434)
T KOG1009|consen 340 IHYSAITDIAWSDDGSVLLVSSTDGF--CSLVTFEPWELG 377 (434)
T ss_pred eeeeeecceeecCCCcEEEEeccCCc--eEEEEEcchhcc
Confidence 38889999999999999999999997 555555555443
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=201.10 Aligned_cols=283 Identities=11% Similarity=0.176 Sum_probs=215.2
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCC---CCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPR---IGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~---~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~ 425 (762)
....+...++-..++.++. ..+.+|.+...... .... ....+..+.|.. +.++|++++..|.|.+||+..
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 4566777788888888876 46777766543321 1111 112344566753 568899999999999999987
Q ss_pred ---ceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 426 ---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 426 ---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+.+..|..|. ..+.++.|++ ...+|++|+.||+|++||++..+...++... ...|
T Consensus 120 ~~rnk~l~~f~EH~----------Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----------SESi 179 (839)
T KOG0269|consen 120 SIRNKLLTVFNEHE----------RSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----------SESI 179 (839)
T ss_pred cccchhhhHhhhhc----------cceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----------chhh
Confidence 45556677776 7889999998 4568899999999999999987665554332 6679
Q ss_pred EEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 502 TLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 502 ~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+++.|+| .+..++++. +.|.+.+||++........ +.+| .+.|.++.|+|++.+||+|+.|+.|+
T Consensus 180 RDV~fsp~~~~~F~s~~---------dsG~lqlWDlRqp~r~~~k----~~AH-~GpV~c~nwhPnr~~lATGGRDK~vk 245 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIH---------DSGYLQLWDLRQPDRCEKK----LTAH-NGPVLCLNWHPNREWLATGGRDKMVK 245 (839)
T ss_pred hceeeccCCCceEEEec---------CCceEEEeeccCchhHHHH----hhcc-cCceEEEeecCCCceeeecCCCccEE
Confidence 9999999 467788887 8899999999976543322 3689 99999999999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcE-EEEEc---CCeEEEEeCCCC-eEEEEeccccCceeEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSV-LAVAA---ETVITLWDPDRN-VLVAVIGETLTPIMNM 655 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~-la~~~---d~~i~iwd~~~~-~~~~~l~~~~~~v~~~ 655 (762)
|||..+.+..... +. ....++.++.|-|+..+ ||+++ |-.|+|||+... -+-.++..|...++.+
T Consensus 246 iWd~t~~~~~~~~------tI----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 246 IWDMTDSRAKPKH------TI----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGI 315 (839)
T ss_pred EEeccCCCcccee------EE----eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccce
Confidence 9999876544332 11 13578899999998775 66664 899999999865 3456778899999999
Q ss_pred EEeC-CCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 656 SFVG-SSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 656 ~~s~-dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+|-. |-..|.+++.|+. |..-.++++.
T Consensus 316 ~W~~~d~~~l~s~sKD~t--v~qh~~knat 343 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGT--VLQHLFKNAT 343 (839)
T ss_pred eccCCCceeeEeecCccH--HHHhhhhccc
Confidence 9976 6678999999997 6655555544
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-20 Score=183.85 Aligned_cols=276 Identities=14% Similarity=0.147 Sum_probs=215.0
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCcee
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
.|..++|-|||..|+.+.+..+.+||...|... +.+.+|.+.|.|++|+.||+.+|+|+.|..|.+|+-.-...
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~ll-----qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLL-----QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCcccc-----cccccccceEEEEEEccCCceeccCCCceeEEEecccccce-
Confidence 788999999999999888999999999999877 78899999999999999999999999999999998532211
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~ 396 (762)
.-..|.+.|.|+.|+|-...|++++- ...-+|..+.... ........
T Consensus 88 -------------------------------LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V-~K~kss~R 134 (1081)
T KOG1538|consen 88 -------------------------------LKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSV-SKHKSSSR 134 (1081)
T ss_pred -------------------------------eeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhH-Hhhhhhee
Confidence 11359999999999999999999876 4577887664332 23334567
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-----CEEEEeecCceEE
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-----GLVALRAENYCIH 471 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~ 471 (762)
+.+++|..||++++.|-.+|+|.+-+-. ++..-.+.....+ +..|.+++|+|.. ..+++.....++.
T Consensus 135 ~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~-------Nspiwsi~~~p~sg~G~~di~aV~DW~qTLS 206 (1081)
T KOG1538|consen 135 IICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGS-------NSPIWSICWNPSSGEGRNDILAVADWGQTLS 206 (1081)
T ss_pred EEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCC-------CCCceEEEecCCCCCCccceEEEEeccceeE
Confidence 8999999999999999999999998654 4443333332221 2789999999953 3677888888888
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|.+.. +.+.. .+.. .....|+.+-++|.++..|+ .|+.+.+|-.+.- ...++.
T Consensus 207 Fy~LsG-~~Igk----~r~L------~FdP~CisYf~NGEy~LiGG---------sdk~L~~fTR~Gv-rLGTvg----- 260 (1081)
T KOG1538|consen 207 FYQLSG-KQIGK----DRAL------NFDPCCISYFTNGEYILLGG---------SDKQLSLFTRDGV-RLGTVG----- 260 (1081)
T ss_pred EEEecc-eeecc----cccC------CCCchhheeccCCcEEEEcc---------CCCceEEEeecCe-EEeecc-----
Confidence 888753 22221 1111 44578999999999999998 8899999976543 222221
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.....|..++..|++++++.|+.||+|.-|++..
T Consensus 261 -~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 261 -EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred -ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 1156999999999999999999999999998754
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-21 Score=180.64 Aligned_cols=301 Identities=16% Similarity=0.141 Sum_probs=219.5
Q ss_pred eeeeccCcCeEEEEEcCCC--cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 275 KITLHHTKKLTVLAFHPTQ--RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~--~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
.....+..+|++++|+|.. +.+|+|+.-|.|-+||+.+.+.- ..-+..+..|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d--------------------------~d~v~~f~~h 233 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD--------------------------KDGVYLFTPH 233 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc--------------------------cCceEEeccC
Confidence 4455678899999999954 58889999999999999643221 1335678889
Q ss_pred ccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 353 PSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 353 ~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
..+|.++.|+|. -..+++.+.||+|++-|++++....+.. ....+..+.|+.+...++++..-|...+||++++..
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s 313 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS 313 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc
Confidence 999999999994 4689999999999999999877643333 234567788888888888888888999999998543
Q ss_pred -EEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 429 -IRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 429 -~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
...+.-|. ..|.+++++|- ..+|++++.|++.+|||++.-..-.......- .|...|.+..|
T Consensus 314 ~~~~~~lh~----------kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~------~HrrsV~sAyF 377 (498)
T KOG4328|consen 314 EYENLRLHK----------KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTL------PHRRSVNSAYF 377 (498)
T ss_pred cchhhhhhh----------cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecc------cccceeeeeEE
Confidence 55555555 68899999995 45789999999999999986544332111111 23778999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEec----CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG----TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~----~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
||++-.|++.+ .|..|+|||.. .......+......+. --.....+|.|+..++++|..-..|-|+
T Consensus 378 SPs~gtl~TT~---------~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 378 SPSGGTLLTTC---------QDNEIRVFDSSCISAKDEPLGTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred cCCCCceEeec---------cCCceEEeecccccccCCccceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence 99988899998 89999999984 2222222221101110 0123456899999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEEEEc--CCeEEEEeCC
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLAVAA--ETVITLWDPD 637 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la~~~--d~~i~iwd~~ 637 (762)
|-..++.+..+. ......|. -..|+|-+..+++|+ .|.|+||--+
T Consensus 448 ~~~~~q~v~el~----------~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 448 DGNGGQMVCELH----------DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cCCCCEEeeecc----------CccccccccceeecccccceeccCCccceEEEEecC
Confidence 998888655541 01112333 357999888666665 7889988654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-21 Score=171.71 Aligned_cols=282 Identities=14% Similarity=0.168 Sum_probs=207.0
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCc-------ee-------ccCCCCCCeEEEEeC-------CCCCeEEEEec
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------KK-------FLPRIGSPLLYFTES-------PDPSLSSISCA 414 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~~-------~~~~~~~~v~~~~~s-------~~~~~l~~~~~ 414 (762)
...+.|+|||..|++-+.|..+.+|++...- .. .....+..|...+|- |+..++++.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 4568899999999999999999999874311 11 112234456666663 67889999999
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc-CCCCceeeEEeecccccC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL-LDDRGISEVQVCERNHQP 493 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~ 493 (762)
+.-|++||.-+|+....+......... ....+++|+|||..|++| ...+|++||+ +.+..-.......++.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~-----taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k-- 203 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEY-----TAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGK-- 203 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhh-----hhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhccc--
Confidence 999999999999988877653311100 244689999999999876 5567999999 4554332222222211
Q ss_pred CCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 494 GDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
.+..+.+.+++|+|.. +.+|.++ ....+-||.-........+ .+| .+.|+.+.|.+||+.|++
T Consensus 204 -~gq~giisc~a~sP~~~~~~a~gs---------Y~q~~giy~~~~~~pl~ll-----ggh-~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 204 -FGQKGIISCFAFSPMDSKTLAVGS---------YGQRVGIYNDDGRRPLQLL-----GGH-GGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred -ccccceeeeeeccCCCCcceeeec---------ccceeeeEecCCCCceeee-----ccc-CCCeeeEEeccCcCeecc
Confidence 1226778999999955 5888888 6678888888877776655 588 999999999999999999
Q ss_pred EeC-CCcEEEEEcccccccccccCCceeeeeecccCCC-CeEE--EEEcCCCcEEEEEc-CCeEEEEeCCC-CeEEEEec
Q 040987 573 SSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK-AMTA--AAFSADGSVLAVAA-ETVITLWDPDR-NVLVAVIG 646 (762)
Q Consensus 573 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~--~~~s~dg~~la~~~-d~~i~iwd~~~-~~~~~~l~ 646 (762)
|+. |-.|..||++........ +..|.. .-.. +...|+|++||+|+ ||.|++||+++ |..+..+.
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~----------L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYA----------LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cccCCCeEEEEeehhccchhhh----------hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccc
Confidence 875 567999999865433221 112222 1123 44568999999998 99999999998 77777888
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
.|...++.++++|-=.++++++...
T Consensus 338 ~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 338 NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cccccccceecCcccceeeeccCce
Confidence 8899999999999888888887644
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=205.22 Aligned_cols=248 Identities=17% Similarity=0.252 Sum_probs=209.6
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
+.+...-.+++|+.+ ....|...+.++..-..++.++.| .+..+-+|.+...... ..+.+|..+|.+
T Consensus 8 m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-----~S~~~hespIeS 75 (825)
T KOG0267|consen 8 MKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-----TSLTGHESPIES 75 (825)
T ss_pred ceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-----heeeccCCccee
Confidence 334455567778764 344568888888887778888854 6777889998876654 457899999999
Q ss_pred EEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 287 LAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
+.|+++..+|++|+.+|+|++||++..+ .++.+.+|...+..+.|+|-+.
T Consensus 76 l~f~~~E~LlaagsasgtiK~wDleeAk------------------------------~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 76 LTFDTSERLLAAGSASGTIKVWDLEEAK------------------------------IVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred eecCcchhhhcccccCCceeeeehhhhh------------------------------hhhhhhccccCcceeeeccceE
Confidence 9999999999999999999999997663 4578999999999999999999
Q ss_pred EEEEEecCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 367 YLYSGGKEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+.++++.|+.+.+||.+...+ .....|...+..+.|+|+|++++.++.|..++|||+..|+....|..|.
T Consensus 126 ~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e--------- 196 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHE--------- 196 (825)
T ss_pred EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccc---------
Confidence 999999999999999995555 4556677889999999999999999999999999999999999999988
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
+.+..+.|+|..-+++.|+.|+++++||+++-..+...... ...|.+.+|+|+++.+++|.
T Consensus 197 -~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~----------~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 197 -GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE----------TDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred -ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc----------cCCceeeeecCCceeeecCc
Confidence 78899999999999999999999999999876544433221 56799999999999999986
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-20 Score=167.10 Aligned_cols=260 Identities=11% Similarity=0.149 Sum_probs=188.2
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP--DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~d 422 (762)
.+|.+-|+++.|.+-|+++++++.|+++++||.+...- -....|.+.|..+.|.+ -|+.+++++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 46889999999999999999999999999999754432 23567889999999954 589999999999999997
Q ss_pred cCC---------ceEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 423 MPS---------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 423 ~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
-.. .....++.... +.|.++.|.|. |-.||+++.||.++||+......+..
T Consensus 90 E~~~~~~~~~~~Wv~~ttl~Dsr----------ssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-------- 151 (361)
T KOG2445|consen 90 EQEKSEEAHGRRWVRRTTLVDSR----------SSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-------- 151 (361)
T ss_pred ecccccccccceeEEEEEeecCC----------cceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc--------
Confidence 631 11222333333 67888888883 56788888888888888754322222
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---CC
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---RR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---~~ 568 (762)
|.+...-...... ...+ .....|+.|+|. ..
T Consensus 152 ------------------------------------------W~Lq~Ei~~~~~p---p~~~-~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 152 ------------------------------------------WTLQHEIQNVIDP---PGKN-KQPCFCVSWNPSRMHEP 185 (361)
T ss_pred ------------------------------------------chhhhhhhhccCC---cccc-cCcceEEeeccccccCc
Confidence 2211110000000 0112 446678888874 45
Q ss_pred eEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCC----CcEEEEEc-CCeEEEEeCCC
Q 040987 569 AAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD----GSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----g~~la~~~-d~~i~iwd~~~ 638 (762)
+||.|+.+ +.++||....... .|.....+.+|..+|++++|.|+ -.+||+++ || |+||.+..
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~r-------Kw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGR-------KWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcc-------eeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence 78888765 4789998765542 33344456689999999999995 34789998 99 99999873
Q ss_pred C--------------------eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 639 N--------------------VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 639 ~--------------------~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
. +.+..+.+|++.|+.+.|.-.|..|++.|.||. |++|...-.
T Consensus 258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~--VRLWkany~ 320 (361)
T KOG2445|consen 258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGC--VRLWKANYN 320 (361)
T ss_pred ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCce--eeehhhhhh
Confidence 1 456668899999999999999999999999998 999986543
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=189.73 Aligned_cols=310 Identities=15% Similarity=0.196 Sum_probs=210.0
Q ss_pred ceeEEEEecCCCeEEEEecCCcc-------eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee--ec
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVN-------SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS--LE 111 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~-------~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~--l~ 111 (762)
..-+||++.++|.|.++|....+ .+....|.+.|.. ++|-|-...|++++ |.+++.||+++++++.. +.
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifD-l~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFD-LKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEe-eccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 46799999999999999977422 2455889999997 99999556777777 79999999999999877 89
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
||.+.|.+++|.|..+ ..+++|+.||.|.|||++....-..-+..
T Consensus 142 GH~~SvkS~cf~~~n~------~vF~tGgRDg~illWD~R~n~~d~~e~~~----------------------------- 186 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNP------AVFCTGGRDGEILLWDCRCNGVDALEEFD----------------------------- 186 (720)
T ss_pred ccccccchhhhccCCC------cceeeccCCCcEEEEEEeccchhhHHHHh-----------------------------
Confidence 9999999999999997 78999999999999998743311100000
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERV 271 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~ 271 (762)
.+++. .|.+... |.. - ....++-|.......
T Consensus 187 ------------------------~~~~~------------~~n~~pt-----psk-p----~~kr~~k~kA~s~ti--- 217 (720)
T KOG0321|consen 187 ------------------------NRIYG------------RHNTAPT-----PSK-P----LKKRIRKWKAASNTI--- 217 (720)
T ss_pred ------------------------hhhhc------------cccCCCC-----CCc-h----hhccccccccccCce---
Confidence 00000 0111000 000 0 001112222221111
Q ss_pred eeeeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
...|+. .+..|...||+++. |+.|+|||+.........+ ......+.
T Consensus 218 ---------~ssvTv-v~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~e----------------------p~~~~~~~ 265 (720)
T KOG0321|consen 218 ---------FSSVTV-VLFKDESTLASAGAADSTIKVWDLRKNYTAYRQE----------------------PRGSDKYP 265 (720)
T ss_pred ---------eeeeEE-EEEeccceeeeccCCCcceEEEeecccccccccC----------------------CCcccCcc
Confidence 112444 44557778998877 9999999998765432110 01112222
Q ss_pred cc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCC-----eEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 351 WH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----LLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 351 ~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.| ...+.++.....|.+|+..+.|+.|++|++.+........+.+. -..-..+||+.++++++.|...++|.
T Consensus 266 t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 266 THSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred CcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeee
Confidence 33 34567777777888988888899999999987655332222221 12234689999999999999999999
Q ss_pred cCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~ 478 (762)
+.+.+ ....+.+|. ..|.+++|.|. -.-++++++|..+++|++..+
T Consensus 346 vs~~e~~~~~l~Ght----------~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 346 VSSPEAPPALLLGHT----------REVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ecCccCChhhhhCcc----------eEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 98743 344566666 68899999883 234777799999999999665
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=170.78 Aligned_cols=313 Identities=12% Similarity=0.119 Sum_probs=222.8
Q ss_pred eeeeccCCCceEEEECC-----CCCEEEEEeCCeEEEEEccCchhhhheeeeee-eccCcCeEEEEEcCC----CcEEEE
Q 040987 229 GVTLAEMKEPQVITISS-----SGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT-LHHTKKLTVLAFHPT----QRIVAA 298 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~sp-----dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~----~~~l~~ 298 (762)
.....|..++..++|.+ +-+.+|+.....+.+|+........ .+.... ..|......++|+-| ..+||+
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir-~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~ 110 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIR-LLQSYADEDHDESFYTCSWSYDSNTGNPFLAA 110 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcccee-eeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence 45566788999999984 2345667788899999887655220 111222 247778888898764 348999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVL 377 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i 377 (762)
|+.-|.|+|.|+..+ ++...+.+|...|+.+.|.|+. +++++++.|..|
T Consensus 111 ~G~~GvIrVid~~~~------------------------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 111 GGYLGVIRVIDVVSG------------------------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred ecceeEEEEEecchh------------------------------hhccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 999999999998766 3457889999999999999975 789999999999
Q ss_pred EEEecCCCceec----cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE------------------ccC
Q 040987 378 VVWQLDTGKKKF----LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI------------------SGI 435 (762)
Q Consensus 378 ~~wd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~------------------~~~ 435 (762)
++|++++..++. ..+|...|.++.|+++|.+|++++.|.++++|++...+....+ ..|
T Consensus 161 RlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~ 240 (385)
T KOG1034|consen 161 RLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTH 240 (385)
T ss_pred EEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccc
Confidence 999999999864 4668889999999999999999999999999999843211111 111
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC-CCCceeeEEeec-----ccccCCCCcceeEEEEEEecC
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL-DDRGISEVQVCE-----RNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~sp~ 509 (762)
-...+..+.|...|.++.|- |.++++-+-++.|..|... -.+.+....... -..-............+|.|-
T Consensus 241 fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~ 318 (385)
T KOG1034|consen 241 FPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPW 318 (385)
T ss_pred cccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHH
Confidence 11112445667777777776 4688888889999999872 111111110000 000000111233445566778
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
++.||.+. ..|.|.+||++...... ..++.-.-. ...|...+||.||..|+...+|++|.-||.-
T Consensus 319 ~~~la~gn---------q~g~v~vwdL~~~ep~~-~ttl~~s~~-~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 319 QKMLALGN---------QSGKVYVWDLDNNEPPK-CTTLTHSKS-GSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred HHHHhhcc---------CCCcEEEEECCCCCCcc-CceEEeccc-cceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 89999998 88999999999877642 112111122 5679999999999999999999999999863
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-21 Score=181.09 Aligned_cols=266 Identities=14% Similarity=0.153 Sum_probs=208.0
Q ss_pred ceeEEEEecCCCEEEE--EecCCeEEEEecCCC--ceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 355 EVSVLIFSSDGAYLYS--GGKEGVLVVWQLDTG--KKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s--~~~dg~i~~wd~~~~--~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
.+.++.|..... |++ .+.|..+++|.-... +... .......-.|++......++++++..+.|+|||++...+.
T Consensus 36 g~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h 114 (673)
T KOG4378|consen 36 GDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIH 114 (673)
T ss_pred cceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHh
Confidence 488899987653 444 446778899975543 1111 1112224445555555588999999999999999987778
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+++|+ ..|.++.++-...+||+++..|.|.+..+.++....++.... ...+.-+.|+|.
T Consensus 115 r~lkdh~----------stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---------gqsvRll~ys~s 175 (673)
T KOG4378|consen 115 RFLKDHQ----------STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---------GQSVRLLRYSPS 175 (673)
T ss_pred hhccCCc----------ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC---------CCeEEEeecccc
Confidence 8888887 789999999999999999999999999999887766665432 345778999998
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
.++++.... .+|.|.+||+.......... ..| ..+...++|+|. ..+|++.+.|..|.+||+....
T Consensus 176 kr~lL~~as--------d~G~VtlwDv~g~sp~~~~~----~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 176 KRFLLSIAS--------DKGAVTLWDVQGMSPIFHAS----EAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred cceeeEeec--------cCCeEEEEeccCCCcccchh----hhc-cCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 876554432 88999999999888776653 578 889999999995 5678899999999999998776
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
....+ ....+.+.++|+++|.+|+.|+ .|.|..||+... .++.++..|...|++++|-+.. .+++
T Consensus 243 s~~~l------------~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 243 STDRL------------TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred cccee------------eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence 65544 2467889999999999999998 999999999865 6788888999999999998864 4443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-20 Score=177.12 Aligned_cols=301 Identities=16% Similarity=0.172 Sum_probs=218.3
Q ss_pred cceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCCCC-CeEEEEecCC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDP-SLSSISCADN 416 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~ 416 (762)
...+.+-+.++|++++|+|.. +.+++|+..|+|-+||+.+.+. .....|..+|.++.|+|.. ..+++.+.||
T Consensus 178 ~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDG 257 (498)
T KOG4328|consen 178 ILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDG 257 (498)
T ss_pred ecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCc
Confidence 345667789999999999965 5788888889999999964433 3467788899999999954 6788899999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+|+.-|++.+.....+.... ....+.++.|+.+...++++..=|.+.+||++++........ -|
T Consensus 258 tiR~~D~~~~i~e~v~s~~~--------d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~---lh----- 321 (498)
T KOG4328|consen 258 TIRLQDFEGNISEEVLSLDT--------DNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR---LH----- 321 (498)
T ss_pred eeeeeeecchhhHHHhhcCc--------cceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhh---hh-----
Confidence 99999998753322222211 114677888998888888888878999999988765322111 11
Q ss_pred cceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 497 VTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
...|+.++++|-. .+||+++ .|++.+|||++.-..... +.+...+| ...|.+..|||++..|++.+.
T Consensus 322 -~kKI~sv~~NP~~p~~laT~s---------~D~T~kIWD~R~l~~K~s-p~lst~~H-rrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 322 -KKKITSVALNPVCPWFLATAS---------LDQTAKIWDLRQLRGKAS-PFLSTLPH-RRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred -hcccceeecCCCCchheeecc---------cCcceeeeehhhhcCCCC-cceecccc-cceeeeeEEcCCCCceEeecc
Confidence 4579999999965 4678887 899999999986554443 11223578 889999999999888999999
Q ss_pred CCcEEEEEcc----cccccccccCCceeeeeecccCCCCe--EEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc
Q 040987 576 GGDFKVWICN----DELQQKDLQSSGWSCHAVGSYKKKAM--TAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 576 dg~i~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~ 648 (762)
|..|+|||.. .-.....+ .|.. .+..++ -..+|.||..++++|. -..|-|+|-..++.+..+...
T Consensus 390 D~~IRv~dss~~sa~~~p~~~I------~Hn~--~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 390 DNEIRVFDSSCISAKDEPLGTI------PHNN--RTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CCceEEeecccccccCCcccee------eccC--cccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCc
Confidence 9999999984 11222121 1111 112233 3568999999999998 788999999999988887544
Q ss_pred cC-ceeE-EEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 649 LT-PIMN-MSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 649 ~~-~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.. .|.+ ..|+|-+..+++|+..+ |.|+||.-+.
T Consensus 462 ~~~tI~~vn~~HP~~~~~~aG~~s~-Gki~vft~k~ 496 (498)
T KOG4328|consen 462 ESSTIPSVNEFHPMRDTLAAGGNSS-GKIYVFTNKK 496 (498)
T ss_pred cccccccceeecccccceeccCCcc-ceEEEEecCC
Confidence 43 3544 47999877677766544 3488886443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-18 Score=181.01 Aligned_cols=369 Identities=24% Similarity=0.415 Sum_probs=279.5
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce-EEeeecCCcc-ceeEEEE-eCCCCcccceeeeEEeeec
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-QISSLEGHKA-PVTTVIV-VPASTPATKILSYCWTASL 141 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-~~~~l~~h~~-~V~~v~~-s~~~~~~~~l~~~l~s~s~ 141 (762)
....+|...+.. +.|.+++..++.++ ++.+.+|+...+. .+..+.++.. .+..+.+ ++++. .+++..+.
T Consensus 59 ~~~~~~~~~i~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 131 (466)
T COG2319 59 LLLRGHEDSITS-IAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGN------SILLASSS 131 (466)
T ss_pred heeeeccceEEE-EEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcc------eEEeccCC
Confidence 456789999997 99999999999998 8999999998887 7777777543 7888888 77772 24444444
Q ss_pred -CCeEEEEeCCC-cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 142 -DGTIKYWDFSV-PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 142 -d~~i~vWd~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
|+.+.+||... .....
T Consensus 132 ~d~~~~~~~~~~~~~~~~-------------------------------------------------------------- 149 (466)
T COG2319 132 LDGTVKLWDLSTPGKLIR-------------------------------------------------------------- 149 (466)
T ss_pred CCccEEEEEecCCCeEEE--------------------------------------------------------------
Confidence 89999999876 33332
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IV 296 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l 296 (762)
....|...+..++|+|++++++.+. ++.+.+|+...+... ....+|...|.+++|+|++. .+
T Consensus 150 ----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 150 ----------TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL-----STLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred ----------EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE-----EeeccCCCceEEEEEcCCcceEE
Confidence 3334566777899999999887553 999999999985543 56667999999999999998 55
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce-eeeccccceeEEEEecCCCEEEEEecCC
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT-TWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
++++.|+.|++||...+.. .. .+.+|.... ...|++++..+++++.|+
T Consensus 215 ~~~~~d~~i~~wd~~~~~~------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 263 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKL------------------------------LRSTLSGHSDSV-VSSFSPDGSLLASGSSDG 263 (466)
T ss_pred EEecCCCcEEEEECCCCcE------------------------------EeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence 5558999999998763322 23 567777765 448999998999999999
Q ss_pred eEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc--cCCCCCCCCCcccCceee
Q 040987 376 VLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS--GIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 376 ~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~ 451 (762)
.+++|+...... .....+...+.++.|+|++..+++++.++.+.+|+..+........ .+. ..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 333 (466)
T COG2319 264 TIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------GPVSS 333 (466)
T ss_pred cEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccC----------CceEE
Confidence 999999987664 2234667899999999988888888888889999998877666665 443 46788
Q ss_pred EEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE-EeeeccccCCCcee
Q 040987 452 IAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST-VDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~-~~~~~~~~~~~~d~ 529 (762)
+.+.+++..++.+ ..|+.+.+|+........... . ...+..+.+++ ...+.. +. .++
T Consensus 334 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~~-~~~~~~~~~---------~~~ 392 (466)
T COG2319 334 LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE---G--------HSNVLSVSFSP-DGRVVSSGS---------TDG 392 (466)
T ss_pred EEECCCCCEEEEeecCCCcEEeeecCCCceeEEec---C--------CceEEEEEECC-CCCEEEEec---------CCC
Confidence 8884333556655 677889999998776111111 1 22278888888 533333 34 778
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+.+|+............ + ...+....+++++..++.++.++.+++|+...
T Consensus 393 ~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTGSLLRNLDG-----H-TSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccCeeeeeccC-----C-CCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 999999998876655421 1 16889999999999999999999999999986
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=163.16 Aligned_cols=266 Identities=13% Similarity=0.180 Sum_probs=193.9
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+..+|.+-|+++.|.+.|+++|+|+.|++|+|||..... .++.+...++.|.+
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s--------------------------~~W~~Ts~Wrah~~ 60 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS--------------------------GTWSCTSSWRAHDG 60 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC--------------------------CceEEeeeEEecCC
Confidence 5667899999999999999999999999999999964432 34456688999999
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecCCCc-------e---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEE
Q 040987 355 EVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGK-------K---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHL 420 (762)
Q Consensus 355 ~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~-------~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i 420 (762)
.|..+.|.+ -|+.+++++.|+++.+|.-.... . ..+......|+.+.|.|. |-.+++++.||.++|
T Consensus 61 Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRI 140 (361)
T KOG2445|consen 61 SIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRI 140 (361)
T ss_pred cEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEE
Confidence 999999965 48999999999999999752111 1 234455678999999985 677899999999999
Q ss_pred EEcCCceEE------EEEccCCCCCCCCCcccCceeeEEEeCC---CCEEEEeecC-----ceEEEEEcCCCCceeeEEe
Q 040987 421 LKMPSMEII------RSISGIKLPCPLPEEYKGLCRDIAFNHD---GGLVALRAEN-----YCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 421 ~d~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~ 486 (762)
|+...--.+ ..++... ..+..+.....++.|+|. ..+||+|+.+ +.++||....+........
T Consensus 141 YEA~dp~nLs~W~Lq~Ei~~~~---~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva 217 (361)
T KOG2445|consen 141 YEAPDPMNLSQWTLQHEIQNVI---DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVA 217 (361)
T ss_pred EecCCccccccchhhhhhhhcc---CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeeh
Confidence 987653222 2222111 112223356678889873 4578888766 5788888765542211111
Q ss_pred ecccccCCCCcceeEEEEEEecC----CCeEEEEeeeccccCCCceeEEEEEEecCCC------------ceeEE--EE-
Q 040987 487 CERNHQPGDDVTVVVTLVALSQD----GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN------------KEFTL--ST- 547 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~----g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~------------~~~~~--~~- 547 (762)
...+ +..+|++++|.|+ -..||+++ .|| |+||.+.... ....+ ..
T Consensus 218 ~L~d------~~dpI~di~wAPn~Gr~y~~lAvA~---------kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~v 281 (361)
T KOG2445|consen 218 ELPD------HTDPIRDISWAPNIGRSYHLLAVAT---------KDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKV 281 (361)
T ss_pred hcCC------CCCcceeeeeccccCCceeeEEEee---------cCc-EEEEEEeeccchhhhhcccCCCCccccceEEe
Confidence 1112 3889999999996 35788888 788 9999998421 11111 11
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
..+..| .+.|..+.|+-.|..|++.+.||.||+|...-
T Consensus 282 s~~~~H-~~~VWrv~wNmtGtiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 282 SELDDH-NGEVWRVRWNMTGTILSSTGDDGCVRLWKANY 319 (361)
T ss_pred eeccCC-CCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence 135688 99999999999999999999999999997653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=183.41 Aligned_cols=297 Identities=12% Similarity=0.119 Sum_probs=212.8
Q ss_pred EEEec---CCCEEEEEecCCeEEEEecCCCce-------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 359 LIFSS---DGAYLYSGGKEGVLVVWQLDTGKK-------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 359 ~~~s~---~g~~l~s~~~dg~i~~wd~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
..|++ ....|+.+.+||.|.++|...... .....|...|..+.|.|....|++++.|.+++.||+++.++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l 134 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL 134 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence 45654 345788899999999999775433 34566888999999999777889999999999999999888
Q ss_pred EEE--EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCc--eeeEEe-----e----------c
Q 040987 429 IRS--ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRG--ISEVQV-----C----------E 488 (762)
Q Consensus 429 ~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~--~~~~~~-----~----------~ 488 (762)
... +.+|. +.+.+++|.|+. ..+++|+.||.|.|||++-... ..++.. . .
T Consensus 135 ~G~~~~~GH~----------~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~ 204 (720)
T KOG0321|consen 135 VGGRLNLGHT----------GSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK 204 (720)
T ss_pred ecceeecccc----------cccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence 777 78877 889999999955 4688999999999999875431 100000 0 0
Q ss_pred ccccCCCCcceeEEE---EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee---cCC--CCCceEE
Q 040987 489 RNHQPGDDVTVVVTL---VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY---EPH--RDAGISA 560 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~---~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~---~~h--~~~~v~~ 560 (762)
+.......+...+.. +.+..|...||+++. .|+.|+|||++.....+....... .-| +.-.+.+
T Consensus 205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga--------~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGA--------ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred ccccccccccCceeeeeEEEEEeccceeeeccC--------CCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 000011112344444 566688899999983 599999999998766554432211 111 0235677
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC--CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK--KKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
+.....|.+|.+.+.|+.|+.||+.+-....... ..++ ..--..-..+||+.+|++|+ |...++|.+.
T Consensus 277 L~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~---------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 277 LILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE---------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred EEecCCCCeEEEEecCCcEEEEeccccCcCchhh---------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeec
Confidence 7777778998888889999999998654433221 0111 11112335689999999998 9999999999
Q ss_pred CCe-EEEEeccccCceeEEEEeCC-CCEEEEEEcCCCCeEEEEECCCCc
Q 040987 638 RNV-LVAVIGETLTPIMNMSFVGS-SEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 638 ~~~-~~~~l~~~~~~v~~~~~s~d-g~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+.+ ....+.+|...|+.++|.|. -.-++++++|.. +++|++.++-
T Consensus 348 ~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~--~kiW~l~~~l 394 (720)
T KOG0321|consen 348 SPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFR--VKIWRLSNGL 394 (720)
T ss_pred CccCChhhhhCcceEEEEEeeccccCCCceeeccCcc--eEEEeccCch
Confidence 874 45567899999999999983 345778899998 9999997654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=178.53 Aligned_cols=291 Identities=12% Similarity=0.114 Sum_probs=215.7
Q ss_pred EEEEEeCCEEEEEEcccceEEeeecCCc--cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc--c--eEEEEE
Q 040987 87 RLLVCTSNTVSIFSTSTGLQISSLEGHK--APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP--E--LLKTID 160 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~~~~~~l~~h~--~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~--~--~~~~~~ 160 (762)
+.+..++..++|||....+....+..|+ ..|.++.|..... + .+++.+.|..|++|.-... + .+....
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-----l-vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~ 78 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-----L-VVASMAGDKVMRIKEKDGKTPEVPRVRKLT 78 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-----E-EEeecCCceeEEEecccCCCCccceeeccc
Confidence 4555556889999998766555554443 2488888888762 2 4566778999999974432 1 111111
Q ss_pred eccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceE
Q 040987 161 VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQV 240 (762)
Q Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~ 240 (762)
+. ...++. ... ..+.+ ++|+..+.|+|||++ .+.+...+.+|...|++
T Consensus 79 gd-~~~Cv~--------------------~~s--~S~y~--------~sgG~~~~Vkiwdl~-~kl~hr~lkdh~stvt~ 126 (673)
T KOG4378|consen 79 GD-NAFCVA--------------------CAS--QSLYE--------ISGGQSGCVKIWDLR-AKLIHRFLKDHQSTVTY 126 (673)
T ss_pred cc-hHHHHh--------------------hhh--cceee--------eccCcCceeeehhhH-HHHHhhhccCCcceeEE
Confidence 11 111110 000 00111 789999999999999 44555889999999999
Q ss_pred EEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE-EEEeecCCeEEEEeccCCceeec
Q 040987 241 ITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI-VAAGDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 241 ~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~ 318 (762)
+.+.-...|||+. ..|.|.|..+.++... ..+..+....|.-+.|+|..++ |.+++.+|.|.+||+.+...+-
T Consensus 127 v~YN~~DeyiAsvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~- 201 (673)
T KOG4378|consen 127 VDYNNTDEYIASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF- 201 (673)
T ss_pred EEecCCcceeEEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-
Confidence 9999999999965 6789999999988743 2223333456778999997774 5578999999999997765432
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
.-...|..+...++|+|. ...|++.+.|..|.+||....+.........+.
T Consensus 202 ----------------------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Pl 253 (673)
T KOG4378|consen 202 ----------------------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPL 253 (673)
T ss_pred ----------------------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCc
Confidence 345679999999999995 467889999999999999977766666677889
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
..++|+++|.+|++|...|.|..||++. ..++..+..|. ..|++++|-|..
T Consensus 254 stvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~----------~sVt~vafq~s~ 305 (673)
T KOG4378|consen 254 STVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHD----------ASVTRVAFQPSP 305 (673)
T ss_pred ceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecc----------cceeEEEeeecc
Confidence 9999999999999999999999999986 55677777766 789999998865
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-22 Score=198.31 Aligned_cols=235 Identities=17% Similarity=0.268 Sum_probs=204.6
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+.+..|...+.++..-..++.+++|+.|..+-+|.+...... .+..|..+|.++.|+++..+|++|+.+|.|++||+..
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee 101 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE 101 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhh
Confidence 455568888888888777889999999999999988766554 4688999999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
++.++++.+|. ..+.++.|+|-+.+.+.++.|..+.+||.+...+...... | ...+..+.
T Consensus 102 Ak~vrtLtgh~----------~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s----~------~~vv~~l~ 161 (825)
T KOG0267|consen 102 AKIVRTLTGHL----------LNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS----H------TRVVDVLR 161 (825)
T ss_pred hhhhhhhhccc----------cCcceeeeccceEEeccccccccceehhhhccCceeeecC----C------cceeEEEe
Confidence 99999999998 6778999999999999999999999999986665554432 2 66799999
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|+|+|++++.++ +|..+++||...++....+ ..| .+.+.++.|+|..-+++.|+.|+++++||++
T Consensus 162 lsP~Gr~v~~g~---------ed~tvki~d~~agk~~~ef-----~~~-e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 162 LSPDGRWVASGG---------EDNTVKIWDLTAGKLSKEF-----KSH-EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred ecCCCceeeccC---------Ccceeeeeccccccccccc-----ccc-cccccccccCchhhhhccCCCCceeeeeccc
Confidence 999999999998 8899999999999887766 567 8899999999999999999999999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
+.+.+.... .....|.+.+|+|+|+.+++|.
T Consensus 227 tfe~I~s~~-----------~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 227 TFEVISSGK-----------PETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred eeEEeeccC-----------CccCCceeeeecCCceeeecCc
Confidence 877665542 2367899999999999999986
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=165.32 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=199.2
Q ss_pred CceeecCCCEEEEEe-CCEEEEEEcccc--------eEE----eeec-CCccceeEEEEe-------CCCCcccceeeeE
Q 040987 78 PPAFSNDVKRLLVCT-SNTVSIFSTSTG--------LQI----SSLE-GHKAPVTTVIVV-------PASTPATKILSYC 136 (762)
Q Consensus 78 ~~~~s~dg~~la~~~-~~~i~iwd~~~~--------~~~----~~l~-~h~~~V~~v~~s-------~~~~~~~~l~~~l 136 (762)
.+.|||||.-|.+-+ |+.+.+|++... ... .+++ .....|...+|- |+. .++
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-------~l~ 126 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-------NLF 126 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-------cee
Confidence 389999999988888 799999998421 111 1111 123456666665 455 678
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++.+.|.-|++||.-+|+....+..-..+
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~--------------------------------------------------- 155 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQ--------------------------------------------------- 155 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhH---------------------------------------------------
Confidence 88999999999999999877665422100
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee---eeccCcCeEEEEEcC-C
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI---TLHHTKKLTVLAFHP-T 292 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp-~ 292 (762)
..-....+++|+|||.+|.+|.+..|++||+............. ..+..+-|.+++|+| +
T Consensus 156 ----------------de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~ 219 (406)
T KOG2919|consen 156 ----------------DEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMD 219 (406)
T ss_pred ----------------HhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCC
Confidence 01123468999999999999999999999994333220011111 123356788999999 5
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
.+.+|.|+....+-|+.-.++ .++..+.+|.+.|+.++|.++|+.|++|+
T Consensus 220 ~~~~a~gsY~q~~giy~~~~~------------------------------~pl~llggh~gGvThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 220 SKTLAVGSYGQRVGIYNDDGR------------------------------RPLQLLGGHGGGVTHLQWCEDGNKLFSGA 269 (406)
T ss_pred CcceeeecccceeeeEecCCC------------------------------CceeeecccCCCeeeEEeccCcCeecccc
Confidence 569999999998888886555 35578889999999999999999999988
Q ss_pred c-CCeEEEEecCCCcee--ccCCCCC-CeE--EEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcc
Q 040987 373 K-EGVLVVWQLDTGKKK--FLPRIGS-PLL--YFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 373 ~-dg~i~~wd~~~~~~~--~~~~~~~-~v~--~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~ 445 (762)
. +..|..||++..+.. .+.+|.. .-. -+...|+++.|++|+.+|.|++||++. +.....+..+.
T Consensus 270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--------- 340 (406)
T KOG2919|consen 270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--------- 340 (406)
T ss_pred cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc---------
Confidence 5 578999999876542 2333333 222 345578999999999999999999998 66566665555
Q ss_pred cCceeeEEEeCCCCEEEEeecC
Q 040987 446 KGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~d 467 (762)
..+..++++|--.++++++..
T Consensus 341 -d~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 341 -DTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred -ccccceecCcccceeeeccCc
Confidence 678899999987777776543
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-17 Score=178.71 Aligned_cols=369 Identities=22% Similarity=0.377 Sum_probs=281.9
Q ss_pred eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCch-hhhheeeeeeeccC-cCeEEEEE-cCCCc-EEEEeec-CC
Q 040987 230 VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVE-AERVVMRKITLHHT-KKLTVLAF-HPTQR-IVAAGDV-TG 303 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~-~~~~~~~~~~~~~~-~~v~~~~~-sp~~~-~l~~~~~-dg 303 (762)
....|...+..+.+.+.+..++.+ .++.+.+|+..... .. .....+. ..+..+.+ ++++. .++..+. |+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLI-----KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeE-----EEEeccCCCceeeEEEECCCcceEEeccCCCCc
Confidence 456788899999999999999855 69999999999885 21 3333322 36777777 88887 5555444 99
Q ss_pred eEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEe
Q 040987 304 RILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQ 381 (762)
Q Consensus 304 ~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd 381 (762)
.+.+|+... . .....+..|...|..++|+|+++.+++++. ++.+++|+
T Consensus 135 ~~~~~~~~~~~------------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (466)
T COG2319 135 TVKLWDLSTPG------------------------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWD 184 (466)
T ss_pred cEEEEEecCCC------------------------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEE
Confidence 999999865 2 234677889999999999999998888885 99999999
Q ss_pred cCCCcee-ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEE-EEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKK-FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIR-SISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~-~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
...+... ....|...+.+++|+|++. .++.++.|+.+.+||...+.... .+.+|. ... ...|+|++
T Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~----------~~~-~~~~~~~~ 253 (466)
T COG2319 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS----------DSV-VSSFSPDG 253 (466)
T ss_pred cCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCC----------cce-eEeECCCC
Confidence 9986554 4555788999999999998 45554889999999988887777 577665 332 22899999
Q ss_pred CEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 459 GLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..+++++.++.+++|+...... .... ..| ...+.++.|+|++..+++++ .++.+.+|+..
T Consensus 254 ~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~------~~~v~~~~~~~~~~~~~~~~---------~d~~~~~~~~~ 314 (466)
T COG2319 254 SLLASGSSDGTIRLWDLRSSSSLLRTL----SGH------SSSVLSVAFSPDGKLLASGS---------SDGTVRLWDLE 314 (466)
T ss_pred CEEEEecCCCcEEEeeecCCCcEEEEE----ecC------CccEEEEEECCCCCEEEEee---------CCCcEEEEEcC
Confidence 8899999999999999987665 2222 222 56789999999999888876 56789999888
Q ss_pred CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE
Q 040987 538 TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 538 ~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 616 (762)
+........ ...| ...+..+.|.+++..++.+ ..|+.+.+|+.......... .....+..+.+
T Consensus 315 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~ 378 (466)
T COG2319 315 TGKLLSSLT---LKGH-EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL------------EGHSNVLSVSF 378 (466)
T ss_pred CCceEEEee---eccc-CCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEe------------cCCceEEEEEE
Confidence 776655443 2356 6678999994343555555 67889999999877621111 11122788999
Q ss_pred cCCCcEEEE-Ec-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 617 SADGSVLAV-AA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 617 s~dg~~la~-~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
++ ...+.. +. ++.+.+|+............+...+....+++++..+++++.++. +++|+..+
T Consensus 379 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 443 (466)
T COG2319 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNT--IRLWDLKT 443 (466)
T ss_pred CC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCc--EEEEeccC
Confidence 88 543443 44 899999999999888777654477999999999999999998988 99999998
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-20 Score=166.94 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=205.8
Q ss_pred eeEEEEecCCCeEEEEecCCccee-ee-----ecCcccccCCceeecCC----CEEEEEe-CCEEEEEEcccceEEeeec
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MI-----RGGRSYVSSPPAFSNDV----KRLLVCT-SNTVSIFSTSTGLQISSLE 111 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~-----~~h~~~v~~~~~~s~dg----~~la~~~-~~~i~iwd~~~~~~~~~l~ 111 (762)
...+|+.+. ..+.+|+.+..-.. .+ ..|...-.. ++|+-|- -+||+++ -|.|+|.|+.++++...+.
T Consensus 55 ~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfyt-csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ 132 (385)
T KOG1034|consen 55 PQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYT-CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYR 132 (385)
T ss_pred CceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEE-EEEEecCCCCCeeEEeecceeEEEEEecchhhhcccee
Confidence 446666543 45667776642211 11 335555554 7777543 3677777 4999999999999999999
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
+|...|+.+.|.|+.. .+++++|.|.+||+|++++..|+..+-
T Consensus 133 ghG~sINeik~~p~~~------qlvls~SkD~svRlwnI~~~~Cv~VfG------------------------------- 175 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRP------QLVLSASKDHSVRLWNIQTDVCVAVFG------------------------------- 175 (385)
T ss_pred ccCccchhhhcCCCCC------cEEEEecCCceEEEEeccCCeEEEEec-------------------------------
Confidence 9999999999999987 788999999999999999999887653
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~ 270 (762)
-..+|...|.++.|+++|.+|++ |.|..+.+|++...+...
T Consensus 176 --------------------------------------G~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 176 --------------------------------------GVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred --------------------------------------ccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 34568889999999999999994 579999999998443221
Q ss_pred -----------------------heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEec-cCCceeeccccccccc
Q 040987 271 -----------------------VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG-FGDRTFATNDNKMNLN 326 (762)
Q Consensus 271 -----------------------~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~-~~~~~~~~~~~~~~~~ 326 (762)
.+......-|...|.|+.|- |+++++-+-++.|..|.. +-.+.+...
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~v------- 288 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNV------- 288 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhcc-------
Confidence 01111233577778888885 578999888999999986 212111100
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEe--cCCCEEEEEecCCeEEEEecCCCceecc-----CCCCCCeEE
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS--SDGAYLYSGGKEGVLVVWQLDTGKKKFL-----PRIGSPLLY 399 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~~wd~~~~~~~~~-----~~~~~~v~~ 399 (762)
.+.......+..+.-....|+-+.|. |-++.|+.|...|.+++||++..++... ......|..
T Consensus 289 ----------kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ 358 (385)
T KOG1034|consen 289 ----------KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQ 358 (385)
T ss_pred ----------CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeee
Confidence 00001112233444455667777664 5578899999999999999998776322 223457899
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+||.||..|+..+.|+.|.-||..
T Consensus 359 ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 359 TSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999999999999999854
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=165.14 Aligned_cols=277 Identities=16% Similarity=0.264 Sum_probs=196.1
Q ss_pred CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCC-CCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 86 KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPA-STPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 86 ~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
..+|++. .|.|++||..+|+.+..+++|...++.+.|..+ +. ..+.+|+.||+|++||++.......+....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~------h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~ 114 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSP------HGVISCSSDGTVRLWDIRSQAESARISWTQ 114 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCC------CeeEEeccCCeEEEEEeecchhhhheeccC
Confidence 3456555 699999999999999999999999999999986 33 567899999999999998766554433111
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
....+..+++.
T Consensus 115 ---------------------------------------------------------------------~~~~~f~~ld~ 125 (376)
T KOG1188|consen 115 ---------------------------------------------------------------------QSGTPFICLDL 125 (376)
T ss_pred ---------------------------------------------------------------------CCCCcceEeec
Confidence 00234456666
Q ss_pred CCCCCEEEEE-----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceee
Q 040987 244 SSSGKYFGIR-----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 244 spdg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
...++.++++ .+-.|.+||++..+. .+......|.+.|+++.|+| +-++|++|+.||.|.++|++....
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~E-- 200 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNE-- 200 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccc---hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcc--
Confidence 6677778765 467899999998775 25567788999999999999 556999999999999999865421
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceeccCCCC--
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIG-- 394 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~-- 394 (762)
+ ..+...-.|...|..+.|..++ +.|.+.+...+..+|+++.+........+
T Consensus 201 ------------------------e-DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 201 ------------------------E-DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred ------------------------h-hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 1 1222233467789999998877 56888889999999999988764322211
Q ss_pred -----------CCeEEEEeCCCCCeEEEEec-CCcEEEEEcC---C---ceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 395 -----------SPLLYFTESPDPSLSSISCA-DNQVHLLKMP---S---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 395 -----------~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~---~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
..+.......++...+.++. .+...++-+. + .+.+..+.++ |...|.++.|..
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~---------~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG---------HEEIVRDILFDV 326 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCC---------cHHHHHHHhhhc
Confidence 01111111223444444433 5555554433 2 2233334432 336788899998
Q ss_pred CCCEEEEeecCceEEEEEcC
Q 040987 457 DGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~ 476 (762)
.+..+.+|++||.+.+|...
T Consensus 327 ~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 327 KNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred ccceeeccCCCceEEEEecC
Confidence 89999999999999999863
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=164.33 Aligned_cols=353 Identities=16% Similarity=0.198 Sum_probs=235.2
Q ss_pred EEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE-eecCCeEEEEeccCCceeec
Q 040987 240 VITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA-GDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 240 ~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~-~~~dg~v~vw~~~~~~~~~~ 318 (762)
-..|||+|+++|+..+..+.|-|..+-+.. +.+. --+.|..+.|..|..+++. ...++.|.+|++...+-
T Consensus 13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~-----qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew--- 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRYRLVIRDSETLQLH-----QLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW--- 83 (447)
T ss_pred ceeECCCCCeeeeeeeeEEEEeccchhhHH-----HHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEeeccee---
Confidence 358999999999999999999999988765 2222 2467888999998876664 56788999999854432
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEE-EEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
...++....++.+++|||||+.|+ +...+-.|.+|.+.+.+...++.....+
T Consensus 84 ---------------------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~ 136 (447)
T KOG4497|consen 84 ---------------------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNV 136 (447)
T ss_pred ---------------------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCc
Confidence 235566677899999999997655 4556788999999998887777777788
Q ss_pred EEEEeCCCCCeEEEEecCCc---EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEE
Q 040987 398 LYFTESPDPSLSSISCADNQ---VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHF 472 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i 472 (762)
..++|+|||++.+..+.... +.+..-.....++.+.... -....+.|+|||..|++-.. +-.|..
T Consensus 137 kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT----------~DltgieWsPdg~~laVwd~~Leykv~a 206 (447)
T KOG4497|consen 137 KGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDT----------IDLTGIEWSPDGNWLAVWDNVLEYKVYA 206 (447)
T ss_pred eeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCc----------ccccCceECCCCcEEEEecchhhheeee
Confidence 99999999999988765432 2222222333444444333 34578999999998876432 122222
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe---
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV--- 549 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--- 549 (762)
|.- .-.+..++|+|.+++|++|+ .|+.+++.+--+.+...++-...
T Consensus 207 Ye~----------------------~lG~k~v~wsP~~qflavGs---------yD~~lrvlnh~tWk~f~eflhl~s~~ 255 (447)
T KOG4497|consen 207 YER----------------------GLGLKFVEWSPCNQFLAVGS---------YDQMLRVLNHFTWKPFGEFLHLCSYH 255 (447)
T ss_pred eee----------------------ccceeEEEeccccceEEeec---------cchhhhhhceeeeeehhhhccchhcc
Confidence 222 23478899999999999999 88999987765544332221100
Q ss_pred -----------ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-cccccc--CCceeeeeecccCCCCeEEEE
Q 040987 550 -----------YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQ--SSGWSCHAVGSYKKKAMTAAA 615 (762)
Q Consensus 550 -----------~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--~~~~~~~~~~~~~~~~i~~~~ 615 (762)
+..- .-...++.|.|.. -...+|...... .+...+ -...++........-.+.-++
T Consensus 256 dp~~~~~~ke~~~~~-ql~~~cLsf~p~~---------~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~la 325 (447)
T KOG4497|consen 256 DPTLHLLEKETFSIV-QLLHHCLSFTPTD---------LEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLA 325 (447)
T ss_pred Cchhhhhhhhhcchh-hhcccccccCCCc---------cccCccccchhhhhhhhcceeeecccCCCCCCCcccccceee
Confidence 0000 0112334444421 112233222110 000000 001111112223356778899
Q ss_pred EcCCCcEEEEEcC---CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 616 FSADGSVLAVAAE---TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 616 ~s~dg~~la~~~d---~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
||+|..++|+-+| +.+.+||++..++...+. ...+|....|.|....|+.+..... +++|....
T Consensus 326 fs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP~~prL~vctg~sr--LY~W~psg 392 (447)
T KOG4497|consen 326 FSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSR--LYFWAPSG 392 (447)
T ss_pred ecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCCCCceEEEEcCCce--EEEEcCCC
Confidence 9999999999874 789999999988877775 5678999999999888888876655 99998664
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.5e-19 Score=163.85 Aligned_cols=319 Identities=15% Similarity=0.184 Sum_probs=220.4
Q ss_pred ccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhh----hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 233 AEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAE----RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
....++..+.|.++.. .+| +|.|..|++|.+...+.. .......+..|...|+++.|+|+|..||+|+.+|.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 3567889999999877 888 558999999988755433 1234456778999999999999999999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+|....-+.+. .+...-.....+.....+.+|...|+.++|+|++.++++++.|..+++||+..|+
T Consensus 91 lWk~~~~~~~~--------------~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIFD--------------ADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EEEecCcCCcc--------------ccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 99865321110 0001111223355667888999999999999999999999999999999999999
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc--------cCCCCC-CCCCc----ccCceeeE
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS--------GIKLPC-PLPEE----YKGLCRDI 452 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~-~~~~~----~~~~v~~~ 452 (762)
.. .+..|...+..++|.|-++++++-+.|...+.+.+...+.+.... ++..+. ..... .......+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 85 567788899999999999999998888877777766543333222 000000 00001 11345678
Q ss_pred EEeCCCCEEEEeec----C-----ceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEec--------------
Q 040987 453 AFNHDGGLVALRAE----N-----YCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQ-------------- 508 (762)
Q Consensus 453 ~~s~~~~~l~~~~~----d-----g~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp-------------- 508 (762)
+|+|||.++++... . +..++|+-..-+. ...++.. ......+.|+|
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~----------~k~~lavr~~pVy~elrp~~~~~~~ 306 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP----------KKPALAVRFSPVYYELRPLSSEKFL 306 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC----------CcceEEEEeeeeEEEeccccccccc
Confidence 99999999887642 1 2334444332111 1111111 12223333332
Q ss_pred ----CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 509 ----DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 509 ----~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
-+..+|.++ .+.|.+||.++......... -| -..|+.++|++||..|+..+.||...+-.+
T Consensus 307 ~~lpyrlvfaiAt----------~~svyvydtq~~~P~~~v~n----ih-y~~iTDiaws~dg~~l~vSS~DGyCS~vtf 371 (434)
T KOG1009|consen 307 FVLPYRLVFAIAT----------KNSVYVYDTQTLEPLAVVDN----IH-YSAITDIAWSDDGSVLLVSSTDGFCSLVTF 371 (434)
T ss_pred cccccceEEEEee----------cceEEEeccccccceEEEee----ee-eeeecceeecCCCcEEEEeccCCceEEEEE
Confidence 233455554 46899999999887776653 36 678999999999999999999998877777
Q ss_pred cccccc
Q 040987 585 NDELQQ 590 (762)
Q Consensus 585 ~~~~~~ 590 (762)
...++-
T Consensus 372 e~~elg 377 (434)
T KOG1009|consen 372 EPWELG 377 (434)
T ss_pred cchhcc
Confidence 655443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=172.34 Aligned_cols=285 Identities=14% Similarity=0.162 Sum_probs=181.5
Q ss_pred EEecCCeEEEEecCC-Cce--eccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCC-ceEEEEEccCCCCCCCCCc
Q 040987 370 SGGKEGVLVVWQLDT-GKK--KFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPS-MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 370 s~~~dg~i~~wd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~ 444 (762)
+...++.|.+||+.+ ++. ............++++|++++|++++ .++.|.+|++.. +.. ........
T Consensus 7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l-~~~~~~~~------- 78 (330)
T PRK11028 7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL-TFAAESPL------- 78 (330)
T ss_pred EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce-EEeeeecC-------
Confidence 336689999999964 432 23333445677899999999988765 478899999873 332 11111110
Q ss_pred ccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+....++++|+++++++++. ++.|.+|++.+...+......... ......++++|+|+++++++.
T Consensus 79 -~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~p~g~~l~v~~~----- 145 (330)
T PRK11028 79 -PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-------LEGCHSANIDPDNRTLWVPCL----- 145 (330)
T ss_pred -CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC-------CCcccEeEeCCCCCEEEEeeC-----
Confidence 034578999999998888764 789999999743322111111110 223567889999999987763
Q ss_pred CCCceeEEEEEEecCCCceeEE-EEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccc--cccccccCCcee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTL-STIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDE--LQQKDLQSSGWS 599 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~ 599 (762)
.++.|.+||+.+....... ........ ......++|+|||++++++.. +++|.+|++... ... ... ...
T Consensus 146 ---~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~-~~~--~~~ 218 (330)
T PRK11028 146 ---KEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIE-CVQ--TLD 218 (330)
T ss_pred ---CCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEE-EEE--EEe
Confidence 6789999999864322110 00000111 334668999999999988876 899999999742 221 110 000
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCe----EEEEeccccCceeEEEEeCCCCEEEEEEc-CCC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNV----LVAVIGETLTPIMNMSFVGSSEYLVATSW-GSK 672 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~dg~~l~s~~~-d~~ 672 (762)
.......+......+.++|||++|+++. ++.|.+|+++... .+...... .....+.|+|||++|++++. ++.
T Consensus 219 ~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~dg~~l~va~~~~~~ 297 (330)
T PRK11028 219 MMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDHSGKYLIAAGQKSHH 297 (330)
T ss_pred cCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECCCCCEEEEEEccCCc
Confidence 0000001122344689999999999985 7899999986532 22222211 23567999999999999875 666
Q ss_pred CeEEEEECC--CCce
Q 040987 673 PQLSVWNMS--KLSI 685 (762)
Q Consensus 673 ~~v~vwd~~--~~~~ 685 (762)
|.+|+++ ++.+
T Consensus 298 --v~v~~~~~~~g~l 310 (330)
T PRK11028 298 --ISVYEIDGETGLL 310 (330)
T ss_pred --EEEEEEcCCCCcE
Confidence 9999874 4444
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-16 Score=160.19 Aligned_cols=329 Identities=15% Similarity=0.123 Sum_probs=209.5
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++-..+|.|.+.|..+.+.+ ..+......-..+.|+|||+++++++.||.
T Consensus 10 V~~~~~~~v~viD~~t~~~~------------------------------~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~ 59 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVV------------------------------ARIPTGGAPHAGLKFSPDGRYLYVANRDGT 59 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEE------------------------------EEEE-STTEEEEEE-TT-SSEEEEEETTSE
T ss_pred EEecCCCEEEEEECCCCeEE------------------------------EEEcCCCCceeEEEecCCCCEEEEEcCCCe
Confidence 45566899999998776543 444443333345789999999999999999
Q ss_pred EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 377 LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
|.++|+.+++.......+.....+++|+||++++++. ..+.+.++|.++.+.++.+.....+... ....+..+..+
T Consensus 60 vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~---~~~Rv~aIv~s 136 (369)
T PF02239_consen 60 VSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDG---PESRVAAIVAS 136 (369)
T ss_dssp EEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTT---S---EEEEEE-
T ss_pred EEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccc---cCCCceeEEec
Confidence 9999999999877667777789999999999999876 4889999999999999887654322111 12467788888
Q ss_pred CCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
|....+++.- +.+.|.+.|....+.+....... ........|+|++++++++.. ..+.|-++
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~---------g~~~~D~~~dpdgry~~va~~--------~sn~i~vi 199 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV---------GRFPHDGGFDPDGRYFLVAAN--------GSNKIAVI 199 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-----------TTEEEEEE-TTSSEEEEEEG--------GGTEEEEE
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeecc---------cccccccccCcccceeeeccc--------ccceeEEE
Confidence 8888555554 45899999987765443222111 234678899999999887754 56689999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCC----------CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN----------RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
|..+++....+... ..+| ...+..+ .+|. +...++.-....+.+||....+....+
T Consensus 200 D~~~~k~v~~i~~g-~~p~-~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I----------- 265 (369)
T PF02239_consen 200 DTKTGKLVALIDTG-KKPH-PGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTI----------- 265 (369)
T ss_dssp ETTTTEEEEEEE-S-SSBE-ETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEE-----------
T ss_pred eeccceEEEEeecc-cccc-ccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEE-----------
Confidence 98887665544321 1233 3333332 2222 222212111223445665555544443
Q ss_pred ccCCCCeEEEEEcCCCcEEEEE---c--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVA---A--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVW 678 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~---~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vw 678 (762)
.....+ ..+.-+|+++++.+. + .++|.++|.++.+.+..+.... ..+..+.|++||+.+..+..++.+.|.+|
T Consensus 266 ~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~ 344 (369)
T PF02239_consen 266 PTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVY 344 (369)
T ss_dssp E-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEE
T ss_pred ECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEE
Confidence 333444 778889999999998 3 4899999999998888875332 25899999999999888877775679999
Q ss_pred ECCCCceeeEEE
Q 040987 679 NMSKLSISWSYL 690 (762)
Q Consensus 679 d~~~~~~~~~~~ 690 (762)
|..+.++..++.
T Consensus 345 D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 345 DAKTLKEKKRIP 356 (369)
T ss_dssp ETTTTEEEEEEE
T ss_pred ECCCcEEEEEEE
Confidence 999999999888
|
... |
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=162.44 Aligned_cols=211 Identities=13% Similarity=0.193 Sum_probs=161.2
Q ss_pred eecCcccccCCceeecCCC--EEEEEeC-CEEEEEEccc----------------ceEEeeecCCccceeEEEEeCCCCc
Q 040987 68 IRGGRSYVSSPPAFSNDVK--RLLVCTS-NTVSIFSTST----------------GLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~--~la~~~~-~~i~iwd~~~----------------~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..+|.+.+.. +.-++-|+ +.|+-++ |.|.|||+.. .+++.++.+|.+.=.+++|||-..
T Consensus 147 ~i~h~g~~NR-vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~- 224 (440)
T KOG0302|consen 147 SIPHYGGINR-VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT- 224 (440)
T ss_pred ccccccccce-eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc-
Confidence 3566666665 66666553 4444444 9999999742 357889999999999999999543
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
.-|+||.--+.|++|...+|.-...
T Consensus 225 -----g~LlsGDc~~~I~lw~~~~g~W~vd-------------------------------------------------- 249 (440)
T KOG0302|consen 225 -----GRLLSGDCVKGIHLWEPSTGSWKVD-------------------------------------------------- 249 (440)
T ss_pred -----cccccCccccceEeeeeccCceeec--------------------------------------------------
Confidence 2344887778899998877653210
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
...+.+|+..|..++|||..+-+ |+ +.|+.|+|||++.+... .. -....|...|+.
T Consensus 250 -------------------~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~--~~-~~~kAh~sDVNV 307 (440)
T KOG0302|consen 250 -------------------QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK--AA-VSTKAHNSDVNV 307 (440)
T ss_pred -------------------CccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--ce-eEeeccCCceee
Confidence 02344589999999999977654 54 47999999999988543 11 234789999999
Q ss_pred EEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-C
Q 040987 287 LAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-G 365 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g 365 (762)
+.|+.+-.+||+|+.||+++|||++.-+ ..+++..++.|..+|+++.|+|. .
T Consensus 308 ISWnr~~~lLasG~DdGt~~iwDLR~~~---------------------------~~~pVA~fk~Hk~pItsieW~p~e~ 360 (440)
T KOG0302|consen 308 ISWNRREPLLASGGDDGTLSIWDLRQFK---------------------------SGQPVATFKYHKAPITSIEWHPHED 360 (440)
T ss_pred EEccCCcceeeecCCCceEEEEEhhhcc---------------------------CCCcceeEEeccCCeeEEEeccccC
Confidence 9999988899999999999999985432 22577899999999999999984 4
Q ss_pred CEEEEEecCCeEEEEecCC
Q 040987 366 AYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~ 384 (762)
..|++++.|.+|.+||+..
T Consensus 361 s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 361 SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred ceEEeccCCCcEEEEEeec
Confidence 6788888999999999864
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-19 Score=160.98 Aligned_cols=250 Identities=15% Similarity=0.188 Sum_probs=177.3
Q ss_pred cCCCCCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCC----------------ceEEEEEccCCCCCCCCCcccCceee
Q 040987 390 LPRIGSPLLYFTESPDP--SLSSISCADNQVHLLKMPS----------------MEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
...|.+.+..+.-++-+ .+.++-+..|.|+||++.. .+++.++.+|. +.-..
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk----------~EGy~ 216 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK----------GEGYG 216 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC----------cccee
Confidence 34455556666555543 4455556788999999853 23455556655 66689
Q ss_pred EEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCcee
Q 040987 452 IAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~ 529 (762)
++|||-. ..|++|..-+.|++|...++.- ..... +...|...|..++|||..+ .||+++ -|+
T Consensus 217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W----~vd~~---Pf~gH~~SVEDLqWSptE~~vfaScS---------~Dg 280 (440)
T KOG0302|consen 217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSW----KVDQR---PFTGHTKSVEDLQWSPTEDGVFASCS---------CDG 280 (440)
T ss_pred eecccccccccccCccccceEeeeeccCce----eecCc---cccccccchhhhccCCccCceEEeee---------cCc
Confidence 9999932 2477777778899999988632 22111 2223488899999999754 677777 899
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
+|+|||++.+.....+.. .+| .+.|+-+.|+.+-.+||+|+.||+++|||++.-+... +...+..|..
T Consensus 281 sIrIWDiRs~~~~~~~~~---kAh-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~--------pVA~fk~Hk~ 348 (440)
T KOG0302|consen 281 SIRIWDIRSGPKKAAVST---KAH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ--------PVATFKYHKA 348 (440)
T ss_pred eEEEEEecCCCccceeEe---ecc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--------cceeEEeccC
Confidence 999999999865544433 688 8899999999998899999999999999998655432 2345568999
Q ss_pred CeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCe-----------E-----EEEeccc--cCceeEEEEeCC-CCEEEEEE
Q 040987 610 AMTAAAFSADG-SVLAVAA-ETVITLWDPDRNV-----------L-----VAVIGET--LTPIMNMSFVGS-SEYLVATS 668 (762)
Q Consensus 610 ~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~-----------~-----~~~l~~~--~~~v~~~~~s~d-g~~l~s~~ 668 (762)
+|+++.|+|.. ..|++++ |..|.|||+.... - .+.+--| ...+..+.|++. ..+|++.+
T Consensus 349 pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa 428 (440)
T KOG0302|consen 349 PITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTA 428 (440)
T ss_pred CeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEec
Confidence 99999999854 3444444 9999999985321 0 0111223 334888999984 56899999
Q ss_pred cCCCCeEEEEEC
Q 040987 669 WGSKPQLSVWNM 680 (762)
Q Consensus 669 ~d~~~~v~vwd~ 680 (762)
.|| +.||..
T Consensus 429 ~dG---fnVfkt 437 (440)
T KOG0302|consen 429 IDG---FNVFKT 437 (440)
T ss_pred ccc---eeEEEe
Confidence 999 777753
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.2e-19 Score=156.14 Aligned_cols=298 Identities=16% Similarity=0.187 Sum_probs=201.2
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.+...+++|...++++.|..++ +|++|..-|.+.+|++.+.+...... +...|+.+..-|+ ..+.+-+.|..+.+|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILW 82 (323)
T ss_pred CCeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEE
Confidence 4567888999999999998877 48899999999999999988765433 5567888888887 556667799999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEE-----eCCCC----EEEEeecCc-eEEEEEcCCCCceeeEEeecccc
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF-----NHDGG----LVALRAENY-CIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----s~~~~----~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++..+.-+..-. -.+.++.| .+.++ .++.-++.. .+.+-|......+.......
T Consensus 83 ~ia~s~~i~i~S-------------i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~--- 146 (323)
T KOG0322|consen 83 TIAYSAFISIHS-------------IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSE--- 146 (323)
T ss_pred EccCcceEEEee-------------eeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchh---
Confidence 998754333211 01122222 22221 122211111 01112221111111100000
Q ss_pred cCCCCcceeEEEEEEec-CC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-----EeecCCCCCceEEEEEc
Q 040987 492 QPGDDVTVVVTLVALSQ-DG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-----IVYEPHRDAGISAVAFH 564 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~~~h~~~~v~~~~~s 564 (762)
....+.+.+..+.. ++ ..++.++. ++|.+.+||+.++..+..++. .....| ..+|.++.|.
T Consensus 147 ---~~Klgsvmc~~~~~~c~s~~lllaGy--------Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash-~qpvlsldya 214 (323)
T KOG0322|consen 147 ---RSKLGSVMCQDKDHACGSTFLLLAGY--------ESGHVVIWDLSTGDKIIQLPQSSKVESPNASH-KQPVLSLDYA 214 (323)
T ss_pred ---ccccCceeeeeccccccceEEEEEec--------cCCeEEEEEccCCceeeccccccccccchhhc-cCcceeeeec
Confidence 01144566665433 23 34444443 889999999999855444332 123457 8899999998
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
+.-..=++++.+..+..|+++......... .. .......|..+.+-||++.+|+++ |++|+||+.++...++
T Consensus 215 s~~~rGisgga~dkl~~~Sl~~s~gslq~~--~e-----~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 215 SSCDRGISGGADDKLVMYSLNHSTGSLQIR--KE-----ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred hhhcCCcCCCccccceeeeeccccCccccc--ce-----EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh
Confidence 876666778888889999886542221111 11 112356788899999999999999 9999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
.++-|...|++++|+||...+|++|.|+. |.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~r--ISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDAR--ISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCce--EEeeec
Confidence 99999999999999999999999999998 999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.6e-19 Score=165.31 Aligned_cols=233 Identities=16% Similarity=0.167 Sum_probs=176.2
Q ss_pred cceeEEEEecCCCeEEEEecCC---ccee-------------------eeecCcccccCCceeecCCC-EEEEEe-CCEE
Q 040987 41 SRSFIFAVARSSGLCRTAEYPA---VNSK-------------------MIRGGRSYVSSPPAFSNDVK-RLLVCT-SNTV 96 (762)
Q Consensus 41 ~~~~~~a~~~~~g~i~~~~~~~---~~~~-------------------~~~~h~~~v~~~~~~s~dg~-~la~~~-~~~i 96 (762)
..++|+|+|.-+..|.|||+.- .... .-.+|++.|.. ++|+..-+ .||+|+ |.+|
T Consensus 190 ~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~-Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 190 GAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLA-LSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred CCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHH-HHhccccceeEEecCCCceE
Confidence 3688999999999999999762 1111 12479999986 99988754 677888 8999
Q ss_pred EEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc-ceEEEEEeccceEEEeeccccc
Q 040987 97 SIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP-ELLKTIDVKFSIFSMVIPSLLR 175 (762)
Q Consensus 97 ~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~-~~~~~~~~~~~v~~~~~~~~~~ 175 (762)
++||+.+|++..++..|.+.|.+++|.|... .+|++||.|++|.+.|.+.. ..-..++....|..+.+..
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p------~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~--- 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEP------SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDP--- 339 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCc------eEEEeccccceEEeeeccCccccCceEEeccceEEEEecC---
Confidence 9999999999999999999999999999987 78999999999999999842 2333445555566554411
Q ss_pred CCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EE
Q 040987 176 QPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IR 253 (762)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~ 253 (762)
..+ ..| .+++.||.|+-+|++.....--....|.+.|.++++++.-..+ + ++
T Consensus 340 -------~se--~~f-----------------~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 340 -------HSE--NSF-----------------FVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred -------CCc--eeE-----------------EEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 111 111 4578999999999998744437788899999999999987655 4 45
Q ss_pred eCCeEEEEEccCchhhhheeeeeeecc---CcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCce
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHH---TKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.++.+.+|++...... ....| -+...|.++.|+-. .+|.|+..+.++|||+.+...
T Consensus 394 ~d~~Vklw~~~~~~~~------~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPK------SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccceEEEEeecCCCCc------ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 8999999999866542 12222 12356777888654 677888888999999876643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-17 Score=163.54 Aligned_cols=289 Identities=12% Similarity=0.149 Sum_probs=181.9
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeeccccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLM 328 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 328 (762)
++...++.|.+|++.+.... ...+.. .+.+....++++|++++|++++ .++.|.+|++.....+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l--~~~~~~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~----------- 71 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGAL--TLLQVV-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALT----------- 71 (330)
T ss_pred EEcCCCCCEEEEEECCCCce--eeeeEE-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceE-----------
Confidence 34457899999999643211 111222 2345678899999999887764 47889999986321111
Q ss_pred ccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCc-e---eccCCCCCCeEEEEeC
Q 040987 329 NNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGK-K---KFLPRIGSPLLYFTES 403 (762)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~-~---~~~~~~~~~v~~~~~s 403 (762)
...... .......++|+|++++|++++. ++.|.+|++++.. . ............++++
T Consensus 72 ----------------~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 134 (330)
T PRK11028 72 ----------------FAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANID 134 (330)
T ss_pred ----------------Eeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeC
Confidence 011111 1224568999999999988764 7899999997432 1 1222233456778899
Q ss_pred CCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCC-c
Q 040987 404 PDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDR-G 480 (762)
Q Consensus 404 ~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~-~ 480 (762)
|++++++++.. ++.|.+||+.+...+.......... + .......++|+|++++++++.. ++.|.+|++.... .
T Consensus 135 p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~ 210 (330)
T PRK11028 135 PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGE 210 (330)
T ss_pred CCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCC
Confidence 99999876654 6899999998633221100000000 0 0134567999999999988876 8999999997421 2
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
....... ...............+.++|+|++++++.. .++.|.+|+++.......+......+ .....
T Consensus 211 ~~~~~~~-~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--------~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~ 278 (330)
T PRK11028 211 IECVQTL-DMMPADFSDTRWAADIHITPDGRHLYACDR--------TASLISVFSVSEDGSVLSFEGHQPTE---TQPRG 278 (330)
T ss_pred EEEEEEE-ecCCCcCCCCccceeEEECCCCCEEEEecC--------CCCeEEEEEEeCCCCeEEEeEEEecc---ccCCc
Confidence 2111111 111000001223456899999999999863 57899999997654333332221111 23457
Q ss_pred EEEcCCCCeEEEEeC-CCcEEEEEcc
Q 040987 561 VAFHPNRRAAVSSSY-GGDFKVWICN 585 (762)
Q Consensus 561 ~~~spd~~~l~~~~~-dg~i~iwd~~ 585 (762)
+.++|||++|+++.. +++|.+|+++
T Consensus 279 ~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 279 FNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEc
Confidence 899999999998775 8899999885
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.9e-18 Score=149.37 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=200.0
Q ss_pred ceeEEEEecC----CCeEEEEecCCc----ceeeeecCcccccCCceeecCC-CEEEEEeC--------CEEEEEEccc-
Q 040987 42 RSFIFAVARS----SGLCRTAEYPAV----NSKMIRGGRSYVSSPPAFSNDV-KRLLVCTS--------NTVSIFSTST- 103 (762)
Q Consensus 42 ~~~~~a~~~~----~g~i~~~~~~~~----~~~~~~~h~~~v~~~~~~s~dg-~~la~~~~--------~~i~iwd~~~- 103 (762)
+...|.+|.. ++.|.+..+... ..+.+.-|.+.|.. ++-+|-. +.|+++.. ..+.||.+..
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~-las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~ 103 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWD-LASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEP 103 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceeh-hhcCCCCCceEEEEEeccCCCcceeeEEEEecccc
Confidence 4556666663 688888887742 23356778889997 9999855 56666642 3688999753
Q ss_pred --------ceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE-EEEEeccceEEEeeccc
Q 040987 104 --------GLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL-KTIDVKFSIFSMVIPSL 173 (762)
Q Consensus 104 --------~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~-~~~~~~~~v~~~~~~~~ 173 (762)
-+++..|. .+-+.|.|+.|.|++. -|++-. |..|.+|++.++..+ ..+...
T Consensus 104 ~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~-------klasm~-dn~i~l~~l~ess~~vaev~ss----------- 164 (370)
T KOG1007|consen 104 LGQSNSSTLECVASLDTEAVGKINCVEWEPNSD-------KLASMD-DNNIVLWSLDESSKIVAEVLSS----------- 164 (370)
T ss_pred cCccccchhhHhhcCCHHHhCceeeEEEcCCCC-------eeEEec-cCceEEEEcccCcchheeeccc-----------
Confidence 23455565 5667999999999994 344444 899999999987652 222110
Q ss_pred ccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC--CCCEEE
Q 040987 174 LRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYFG 251 (762)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la 251 (762)
++. .+.....+-+||| ||+.++
T Consensus 165 ------------------------------------~s~--------------------e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 165 ------------------------------------ESA--------------------EMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred ------------------------------------ccc--------------------cccceecccccCCCCccceEE
Confidence 111 1223344557888 899999
Q ss_pred EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeeccccccccccccc
Q 040987 252 IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNN 330 (762)
Q Consensus 252 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 330 (762)
+..++++..||+++..+ ...+...|...|..+.|+|+-+ +|++|+.||.|++||.+..+
T Consensus 189 tt~d~tl~~~D~RT~~~----~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---------------- 248 (370)
T KOG1007|consen 189 TTSDSTLQFWDLRTMKK----NNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---------------- 248 (370)
T ss_pred EeCCCcEEEEEccchhh----hcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----------------
Confidence 99999999999998774 3466778999999999999765 78899999999999986543
Q ss_pred ccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCC-------------------------
Q 040987 331 EEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDT------------------------- 384 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~------------------------- 384 (762)
.+++.+.+|...|+++.|+|. .++|++++.|..|.+|....
T Consensus 249 -------------~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~ 315 (370)
T KOG1007|consen 249 -------------FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERV 315 (370)
T ss_pred -------------ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhc
Confidence 456889999999999999985 46788999999999996532
Q ss_pred -----CceeccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcC
Q 040987 385 -----GKKKFLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMP 424 (762)
Q Consensus 385 -----~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~ 424 (762)
|....+..|...|++++||.-..+ +++-+.||.+.|=.+.
T Consensus 316 kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 316 KPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 111234567788999999876665 5566789988876554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=190.38 Aligned_cols=284 Identities=14% Similarity=0.191 Sum_probs=209.7
Q ss_pred EEEEecCCC-EEEEEe----------cCCeEEEEecC--CCc----eeccCCCCCCeEEEEeCCCCCe----EEEEecCC
Q 040987 358 VLIFSSDGA-YLYSGG----------KEGVLVVWQLD--TGK----KKFLPRIGSPLLYFTESPDPSL----SSISCADN 416 (762)
Q Consensus 358 ~~~~s~~g~-~l~s~~----------~dg~i~~wd~~--~~~----~~~~~~~~~~v~~~~~s~~~~~----l~~~~~d~ 416 (762)
.++|+|++. ++++|. .+.++.+|.+. ... .........+...++|.+.|.. |+.|..||
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG 90 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDG 90 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCC
Confidence 468888885 444332 23445555443 332 1223334567889999988766 88888999
Q ss_pred cEEEEEcCCc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 417 QVHLLKMPSM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 417 ~i~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
.|.+||...- ..+.+...|. +.|..+.|++... +||+|+.||.|.|||+...+.......
T Consensus 91 ~I~ly~p~~~~~~~~~~~la~~~~h~----------G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~--- 157 (1049)
T KOG0307|consen 91 NIVLYDPASIIANASEEVLATKSKHT----------GPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS--- 157 (1049)
T ss_pred ceEEecchhhccCcchHHHhhhcccC----------CceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC---
Confidence 9999998752 1233344444 8999999999655 999999999999999987654443321
Q ss_pred cccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 490 NHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
......|.+++|+..-. .|++++ .++.+.|||++..+.+..+.. .+. ...+..++|+|+..
T Consensus 158 -----~~~~~eI~~lsWNrkvqhILAS~s---------~sg~~~iWDlr~~~pii~ls~---~~~-~~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 158 -----QAPPSEIKCLSWNRKVSHILASGS---------PSGRAVIWDLRKKKPIIKLSD---TPG-RMHCSVLAWHPDHA 219 (1049)
T ss_pred -----CCCcccceEeccchhhhHHhhccC---------CCCCceeccccCCCccccccc---CCC-ccceeeeeeCCCCc
Confidence 11167799999988654 566666 778999999998877766643 222 34578999999854
Q ss_pred -eEEEEeCCC---cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEE
Q 040987 569 -AAVSSSYGG---DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 569 -~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
.|++++.|. .|.+||++....... .+..|...|.++.|++.+ ++|++++ |+.|.+|+.++++.+
T Consensus 220 Tql~~As~dd~~PviqlWDlR~assP~k----------~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 220 TQLLVASGDDSAPVIQLWDLRFASSPLK----------ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred eeeeeecCCCCCceeEeecccccCCchh----------hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 566666553 599999876543322 245799999999999976 7788887 999999999999999
Q ss_pred EEeccccCceeEEEEeCCCC-EEEEEEcCCCCeEEEEECCCCc
Q 040987 643 AVIGETLTPIMNMSFVGSSE-YLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~-~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
..+....+.+..+.|.|... .++.++.||. |.|+.+.++.
T Consensus 290 ~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk--I~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQGNWCFDVQWCPRNPSVMAAASFDGK--ISIYSLQGTD 330 (1049)
T ss_pred eecCCCCcceeeeeecCCCcchhhhheeccc--eeeeeeecCC
Confidence 99988778899999999544 8888999999 9999998765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=157.64 Aligned_cols=302 Identities=14% Similarity=0.179 Sum_probs=202.2
Q ss_pred eEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccC----cCeEEEEEcC-------CCcEEEEeecCC
Q 040987 239 QVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHT----KKLTVLAFHP-------TQRIVAAGDVTG 303 (762)
Q Consensus 239 ~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~----~~v~~~~~sp-------~~~~l~~~~~dg 303 (762)
..+.+-|...+|+++. ...+.+|=....+. .+...|. ....|++|.. .|+++|.|+.|.
T Consensus 129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e~------nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp 202 (463)
T KOG0270|consen 129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEEE------NLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDP 202 (463)
T ss_pred ccceeccCCcEEEEeeccCCceEEEEEEEcCCCc------ceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCc
Confidence 3556778788887662 24455554444432 2333332 2234666643 357999999999
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~ 382 (762)
.|.|||+.-...+.+.-.... ..+......++.-..-.+|++.|..++|+.+ .+.|++|+.|.+|.+||+
T Consensus 203 ~IeIWDLDI~d~v~P~~~LGs---------~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~ 273 (463)
T KOG0270|consen 203 EIEIWDLDIVDAVLPCVTLGS---------KASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV 273 (463)
T ss_pred eeEEeccccccccccceeech---------hhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEc
Confidence 999999865433221100000 0000000011111223579999999999765 357899999999999999
Q ss_pred CCCceec-cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 383 DTGKKKF-LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 383 ~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
.++++.. +..|+..|.++.|+|. ...|++|+.|+++.+.|.+. ......+. +.|..++|.|.
T Consensus 274 ~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~-------------g~VEkv~w~~~ 340 (463)
T KOG0270|consen 274 DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD-------------GEVEKVAWDPH 340 (463)
T ss_pred CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec-------------cceEEEEecCC
Confidence 9999965 4458889999999985 57899999999999999984 11222222 67889999996
Q ss_pred CC-EEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEE
Q 040987 458 GG-LVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 458 ~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.. .+++++.||+|+-+|++.. +.+.++..+ ...|.++++++.-. ++++++ .++.+++|
T Consensus 341 se~~f~~~tddG~v~~~D~R~~~~~vwt~~AH----------d~~ISgl~~n~~~p~~l~t~s---------~d~~Vklw 401 (463)
T KOG0270|consen 341 SENSFFVSTDDGTVYYFDIRNPGKPVWTLKAH----------DDEISGLSVNIQTPGLLSTAS---------TDKVVKLW 401 (463)
T ss_pred CceeEEEecCCceEEeeecCCCCCceeEEEec----------cCCcceEEecCCCCcceeecc---------ccceEEEE
Confidence 54 5667779999999999876 556665543 77899999988654 566766 89999999
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccc
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++............ -. -+...|.++.|+-. .+++|+..+.++|||+.+...+.
T Consensus 402 ~~~~~~~~~v~~~~---~~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 402 KFDVDSPKSVKEHS---FK-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred eecCCCCccccccc---cc-ccceeecccCCCcceEEEecCccceEEEeecccChhHH
Confidence 99866543221110 00 23356677777643 57788888889999998765443
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=150.36 Aligned_cols=300 Identities=14% Similarity=0.180 Sum_probs=198.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 353 (762)
-.+.+|.+.++++.|..+++ |.+|..-|.|++|++.+.+.. ..++ .|.
T Consensus 8 fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~------------------------------~~~r~~g~ 56 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDL------------------------------PLIRLFGR 56 (323)
T ss_pred eEeccccchheehhhccchh-hhcccccceEEEEEeecCccc------------------------------hhhhhhcc
Confidence 34558999999999998875 889999999999999877543 3444 466
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEE-----eCCCCC---eEEEEecCC--cEEEEEc
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFT-----ESPDPS---LSSISCADN--QVHLLKM 423 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~-----~s~~~~---~l~~~~~d~--~i~i~d~ 423 (762)
..|+.+.-.|+ ..+.+-+.|+.+.+|++..+....... -.+.++. +.++++ .++.....+ .+++-|.
T Consensus 57 ~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~ 133 (323)
T KOG0322|consen 57 LFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDG 133 (323)
T ss_pred ceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEee--eeccccccccceeccCCCcchhheecCCcccchhhhhcc
Confidence 78888888887 578889999999999998765532221 1122222 222221 122111111 1222232
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeC-CCC--EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH-DGG--LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.....+....... ....+.+.+..+.. ++. ++++|.++|.+.+||+.++..+..++...+...+...|..+
T Consensus 134 g~~tqv~i~dd~~------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp 207 (323)
T KOG0322|consen 134 GDTTQVQIADDSE------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP 207 (323)
T ss_pred CccceeEccCchh------ccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc
Confidence 2221222111111 11124555555433 222 46778899999999999986555554443333334445788
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
+.++.+.+.-..=++++ .+..+..|+++.......+....... .-.|..+..-||++.+|+++.|+.||
T Consensus 208 vlsldyas~~~rGisgg---------a~dkl~~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiR 276 (323)
T KOG0322|consen 208 VLSLDYASSCDRGISGG---------ADDKLVMYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIR 276 (323)
T ss_pred ceeeeechhhcCCcCCC---------ccccceeeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEE
Confidence 99999987655555555 55678888877542222221111111 34688899999999999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
||..++......+ .+|...|++++|+||..++|.++ |++|.+|++
T Consensus 277 Vyswrtl~pLAVL-----------kyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 277 VYSWRTLNPLAVL-----------KYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeccCCchhhh-----------hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999988877665 47999999999999999999999 999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=159.40 Aligned_cols=338 Identities=14% Similarity=0.171 Sum_probs=230.0
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-cc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WH 352 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h 352 (762)
++-+.+|.+.|+++.|+.++++|++|+.|..+++|+++..-. ...++++.... .|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~------------------------~k~~KPI~~~~~~H 104 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV------------------------RKTPKPIGVMEHPH 104 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh------------------------hcCCCCceeccCcc
Confidence 355678999999999999999999999999999999743211 11123344433 35
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-E
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCADNQVHLLKMPSME-I 428 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-~ 428 (762)
...|.+++|....+.+++|+.+++|.+.|+++.+.+.+..+.. .|+.+..+|-.+.+++.+.++.|.+||.+... .
T Consensus 105 ~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 105 RSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred ccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 6899999999999999999999999999999999887777665 89999999999999999999999999998643 2
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
+..+-... .......+.|+|. ..+|++.+..+-+-+||.+......--.....+. ......-..+.|+
T Consensus 185 ~~~~~~AN--------~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L---~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 185 ISLVLPAN--------SGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL---PQENTEWMGSLWS 253 (609)
T ss_pred CceeeecC--------CCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC---cccchhhhheeeC
Confidence 22221111 1146678899995 4577888888889999997653211100000000 0002223677899
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC------CCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR------DAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~------~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
|.|..+.+.- ....-.+||+-+.++.. ++ ..|. ...+.+++|-.|. .+++|+.+=.|++
T Consensus 254 ~~G~Q~msiR---------R~~~P~~~D~~S~R~~V-~k----~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~ 318 (609)
T KOG4227|consen 254 PSGNQFMSIR---------RGKCPLYFDFISQRCFV-LK----SDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHI 318 (609)
T ss_pred CCCCeehhhh---------ccCCCEEeeeeccccee-Ee----ccCCCCcceeeeeeeeeeeecce-eeeccCcccceEE
Confidence 9999888765 33445667777654432 21 1121 2356677887654 4888988888999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
|.+.......-+ +.+ -.|..-+ -..|.| .+.+.+|+||.+-++.+.|+|..
T Consensus 319 WklP~~~ds~G~------------------~~I--G~~~~~~----~~~~~i-----~~~~~VLrGHRSv~NQVRF~~H~ 369 (609)
T KOG4227|consen 319 WKLPRANDSYGF------------------TQI--GHDEEEM----PSEIFI-----EKELTVLRGHRSVPNQVRFSQHN 369 (609)
T ss_pred EecCCCccccCc------------------ccc--CcchhhC----chhhee-----cceeEEEecccccccceeecCCc
Confidence 988532211110 000 0000000 011111 34566889999999999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.+|++.+-.+. +++|. ..++.|.+.++++
T Consensus 370 ~~l~SSGVE~~--~KlWS--~~r~P~~~D~~~E 398 (609)
T KOG4227|consen 370 NLLVSSGVENS--FKLWS--DHRLPWSYDLPFE 398 (609)
T ss_pred ceEeccchhhh--eeccc--cccCCcccCCccc
Confidence 99999999988 99995 3445577777666
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=182.68 Aligned_cols=284 Identities=18% Similarity=0.185 Sum_probs=220.7
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
+.+.||.+.|.| ++|...|+++++|+ |..|+||..+++.++..+.||.+.|+.++.+.+. .+++++|.|..
T Consensus 184 krLlgH~naVyc-a~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-------~~iaaaS~D~v 255 (1113)
T KOG0644|consen 184 KRLLGHRNAVYC-AIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-------TMIAAASNDKV 255 (1113)
T ss_pred HHHHhhhhheee-eeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-------hhhhhcccCce
Confidence 457999999998 99999999999999 5999999999999999999999999999999998 68889999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++|.+.++..+.
T Consensus 256 IrvWrl~~~~pvs------------------------------------------------------------------- 268 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVS------------------------------------------------------------------- 268 (1113)
T ss_pred EEEEecCCCchHH-------------------------------------------------------------------
Confidence 9999998877654
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.+.+|++.|++++|+|-. +++.||++++||..- .................+.++.|..++..+++++.|+.
T Consensus 269 -----vLrghtgavtaiafsP~~---sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 269 -----VLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred -----HHhccccceeeeccCccc---cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 445677888888888865 556788999998871 11100111222233467788888888999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~ 383 (762)
-..|... .+.++...+.-+.++.|- .+.+++-.+-.+++|++.
T Consensus 340 a~n~e~~------------------------------------~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~ 383 (1113)
T KOG0644|consen 340 ARNHEFE------------------------------------QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLY 383 (1113)
T ss_pred cccchhh------------------------------------HhhhhccceEEEeccccccccceeeeeeeEeeeeecc
Confidence 8888752 233344444344443332 456667777889999999
Q ss_pred CCcee-ccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE
Q 040987 384 TGKKK-FLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461 (762)
Q Consensus 384 ~~~~~-~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 461 (762)
+|... .+..|...+..+.++|-+..+ ..++.||...|||+-.|.+++...... +.+....||+||..+
T Consensus 384 ~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh----------~kl~d~kFSqdgts~ 453 (1113)
T KOG0644|consen 384 TGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH----------GKLVDGKFSQDGTSI 453 (1113)
T ss_pred cchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc----------ceeeccccCCCCceE
Confidence 99875 467788899999999966554 567789999999999888777654222 677888999999999
Q ss_pred EEeecCceEEEEEcCCCC
Q 040987 462 ALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~ 479 (762)
+....-|.++|.....++
T Consensus 454 ~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 454 ALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ecCCCCCceEEeccCCCc
Confidence 988888999988775554
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-17 Score=147.24 Aligned_cols=276 Identities=15% Similarity=0.203 Sum_probs=192.7
Q ss_pred cCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCeEEEEecC--------CcEEEEEcCCceEEEEEccCCCCCC
Q 040987 373 KEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSLSSISCAD--------NQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
.|++|.+.+++.+.- ..+..+.+.|..++-+|-.+.+++.... ..+.||.+..............-..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 457787777665443 2456677899999999966655543322 2467888764211100000000000
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEe
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVD 517 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~ 517 (762)
....+-+.+.++.|.|++..+++-. |..|.+|++..+.. ...+...... .+....++-+|+| ||+.+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~-----e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA-----EMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc-----cccceecccccCCCCccceEEEe-
Confidence 1112236889999999999988875 77899999988776 3333322111 1255678889998 78888888
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCC
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.++++..||+++..+...+. .+| ...|..+.|+|+.+ +|++++.||.|+|||.+..+....
T Consensus 191 ---------~d~tl~~~D~RT~~~~~sI~----dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~---- 252 (370)
T KOG1007|consen 191 ---------SDSTLQFWDLRTMKKNNSIE----DAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ---- 252 (370)
T ss_pred ---------CCCcEEEEEccchhhhcchh----hhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc----
Confidence 67899999999988877764 577 78999999999865 588999999999999987654332
Q ss_pred ceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCC-----------------------------eEEEEe
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRN-----------------------------VLVAVI 645 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~-----------------------------~~~~~l 645 (762)
...+|...|.++.|.|.- ++|.+|+ |..|.+|...+- .++.++
T Consensus 253 ------el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 253 ------ELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred ------ccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 246899999999999954 4566666 999999975321 124466
Q ss_pred ccccCceeEEEEeC-CCCEEEEEEcCCCCeEEEEECC
Q 040987 646 GETLTPIMNMSFVG-SSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 646 ~~~~~~v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..|.+.|++++||. |.=.+|+-+.||. +.|=.+.
T Consensus 327 dehEDSVY~~aWSsadPWiFASLSYDGR--viIs~V~ 361 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLSYDGR--VIISSVP 361 (370)
T ss_pred cccccceEEEeeccCCCeeEEEeccCce--EEeecCC
Confidence 77999999999998 5556778899997 7765543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-18 Score=155.27 Aligned_cols=246 Identities=13% Similarity=0.178 Sum_probs=188.2
Q ss_pred CCCEEEEE----eCCeEEEEEcc-CchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecc
Q 040987 246 SGKYFGIR----KQRKLLIWKVP-DVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATN 319 (762)
Q Consensus 246 dg~~la~~----~~~~i~iwd~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~ 319 (762)
+.++||.. ..|...+.-+. +|+.. .-.....+|.++|..++|+| +...+|+|+.|.+|.||.+..+....
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d--~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-- 118 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMD--ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-- 118 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccC--CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccccc--
Confidence 45677632 23344444332 23222 22356679999999999999 67789999999999999986553322
Q ss_pred cccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceeccCCCCCCeE
Q 040987 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL 398 (762)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~ 398 (762)
+..+++..+.+|...|--+.|+|.. +.|++++.|.+|.+|++.+|+......|+..|.
T Consensus 119 ---------------------~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~ 177 (472)
T KOG0303|consen 119 ---------------------DLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY 177 (472)
T ss_pred ---------------------CcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE
Confidence 1225678999999999999999964 678899999999999999999876667999999
Q ss_pred EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEc
Q 040987 399 YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSL 475 (762)
Q Consensus 399 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~ 475 (762)
++.|+.||.++++.+.|..|+|||.++++.+..-.+|.. ..-..+.|-.++..+-+|. .+.++-+||.
T Consensus 178 S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG---------~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp 248 (472)
T KOG0303|consen 178 SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEG---------AKPARAIFLASGKIFTTGFSRMSERQIALWDP 248 (472)
T ss_pred EEEeccCCceeeeecccceeEEEcCCCCcEeeecccccC---------CCcceeEEeccCceeeeccccccccceeccCc
Confidence 999999999999999999999999999999988877764 3446678888888554443 4678999998
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.+-+....+..... ...|.---+.+|.+.+..++. +|+.|+.|.+.....
T Consensus 249 ~nl~eP~~~~elDt--------SnGvl~PFyD~dt~ivYl~GK--------GD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 249 NNLEEPIALQELDT--------SNGVLLPFYDPDTSIVYLCGK--------GDSSIRYFEITNEPP 298 (472)
T ss_pred ccccCcceeEEecc--------CCceEEeeecCCCCEEEEEec--------CCcceEEEEecCCCc
Confidence 76655433333222 455666677899888888774 899999999987653
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-16 Score=159.19 Aligned_cols=536 Identities=14% Similarity=0.129 Sum_probs=318.1
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCccc------ceeeeEEeeecCCeEEEEeCC
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPAT------KILSYCWTASLDGTIKYWDFS 151 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~------~l~~~l~s~s~d~~i~vWd~~ 151 (762)
++.|+|.| +||+|+...|.|.|..+-+.++.+.-|...|+.+.|.|-.-+-. .- -.||++...|.|.+||..
T Consensus 20 A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~-lliAsaD~~GrIil~d~~ 97 (1062)
T KOG1912|consen 20 AADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ-LLIASADISGRIILVDFV 97 (1062)
T ss_pred ccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccc-eeEEeccccCcEEEEEeh
Confidence 58999988 99999999999999999999999999999999999988531100 11 257888889999999999
Q ss_pred CcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 152 VPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 152 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.+..+..+..+. ++..+ +|.....+.+. +++.+ .....+.+||..+|+.. -.
T Consensus 98 ~~s~~~~l~~~~~~~qdl-----~W~~~rd~Srd--~LlaI-------------------h~ss~lvLwntdtG~k~-Wk 150 (1062)
T KOG1912|consen 98 LASVINWLSHSNDSVQDL-----CWVPARDDSRD--VLLAI-------------------HGSSTLVLWNTDTGEKF-WK 150 (1062)
T ss_pred hhhhhhhhcCCCcchhhe-----eeeeccCcchh--eeEEe-------------------cCCcEEEEEEccCCcee-ec
Confidence 998888887776 66555 33333222221 12222 34568999999999988 23
Q ss_pred eeccCCCceEEEECC-CCCEEE-EEeCCeEEEEEccCchhh--hheeeeeeeccCc------------------------
Q 040987 231 TLAEMKEPQVITISS-SGKYFG-IRKQRKLLIWKVPDVEAE--RVVMRKITLHHTK------------------------ 282 (762)
Q Consensus 231 ~~~~~~~v~~~~~sp-dg~~la-~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~------------------------ 282 (762)
.........|+.+.| |.+.+. .+..|.+.+-+.-..... .....++...|.+
T Consensus 151 ~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fi 230 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFI 230 (1062)
T ss_pred cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHH
Confidence 333344566788888 445554 566777766654322111 0011122222222
Q ss_pred -CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 -KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 -~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..-.++|+|.-+.++.......+.++|++-...+ .+..-..+.+.-+.+
T Consensus 231 ty~a~faf~p~~rn~lfi~~prellv~dle~~~~l------------------------------~vvpier~~akfv~v 280 (1062)
T KOG1912|consen 231 TYCAQFAFSPHWRNILFITFPRELLVFDLEYECCL------------------------------AVVPIERGGAKFVDV 280 (1062)
T ss_pred HHHHhhhcChhhhceEEEEeccceEEEcchhhcee------------------------------EEEEeccCCcceeEe
Confidence 0112567886554554556777999998665433 233334445566777
Q ss_pred ecCC--CEEEEEecCCeEEEEecCCCceeccC-------CCCCCeEEE-----------EeCCC-CCeEEEEecCCcEEE
Q 040987 362 SSDG--AYLYSGGKEGVLVVWQLDTGKKKFLP-------RIGSPLLYF-----------TESPD-PSLSSISCADNQVHL 420 (762)
Q Consensus 362 s~~g--~~l~s~~~dg~i~~wd~~~~~~~~~~-------~~~~~v~~~-----------~~s~~-~~~l~~~~~d~~i~i 420 (762)
-|++ ..|++.-.||.+.+|--+........ .....+.++ +..|. ...++.--.+|...+
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~ 360 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTF 360 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHH
Confidence 7765 45788888999999965442111100 111112221 22232 333444445677788
Q ss_pred EEcCCceEEEEEccCCC---------------------CCCCCCcccCceeeEEE-----------eCCCC-------EE
Q 040987 421 LKMPSMEIIRSISGIKL---------------------PCPLPEEYKGLCRDIAF-----------NHDGG-------LV 461 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~v~~~~~-----------s~~~~-------~l 461 (762)
|.+.+++.-........ .......|.....+... .|.++ ++
T Consensus 361 w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLv 440 (1062)
T KOG1912|consen 361 WQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLV 440 (1062)
T ss_pred HhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeE
Confidence 87775432211110000 00000011111121111 12222 57
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
|+|+..|+|.++|+.++..-..+..+ ...|.++.|....+++-.+.........+..+.+.+-|+++|..
T Consensus 441 AvGT~sGTV~vvdvst~~v~~~fsvh----------t~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls 510 (1062)
T KOG1912|consen 441 AVGTNSGTVDVVDVSTNAVAASFSVH----------TSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS 510 (1062)
T ss_pred EeecCCceEEEEEecchhhhhhhccc----------ccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc
Confidence 89999999999999988765555433 67799999988777665554332222223556788999998865
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccccc-------CCceeeeee-----------
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQ-------SSGWSCHAV----------- 603 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~~~~----------- 603 (762)
...-.. ..+. ..+|+.+..|..++||+..-.+.-+.+||+++........ .-.|..+..
T Consensus 511 k~fR~l--~~~d-espI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q 587 (1062)
T KOG1912|consen 511 KRFRGL--QKPD-ESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQ 587 (1062)
T ss_pred cccccC--CCCC-cCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhh
Confidence 332110 1234 7789999999999999999999999999997655433211 112221000
Q ss_pred ---------cccCCCCeE---------------------------EEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-
Q 040987 604 ---------GSYKKKAMT---------------------------AAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI- 645 (762)
Q Consensus 604 ---------~~~~~~~i~---------------------------~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l- 645 (762)
....+..+. .|+| .+..++.|. +|.+.+||+...+-....
T Consensus 588 ~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d 665 (1062)
T KOG1912|consen 588 SSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRD 665 (1062)
T ss_pred hhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccC
Confidence 000011111 1223 345788898 999999997754333322
Q ss_pred -ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 646 -GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 646 -~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
..|........+-|....++.--.|+ +-+||.+.-.++.++.
T Consensus 666 ~p~~ra~~l~~~~ipG~~~~lvl~~d~---~~lwdtk~~~lV~sia 708 (1062)
T KOG1912|consen 666 SPDPRAHSLTFPQIPGDHTTLVLELDW---LPLWDTKADTLVLSIA 708 (1062)
T ss_pred CCCchhhheecccCCCCceEEEEecCc---ceecccccceeeeeec
Confidence 22333344444555333455556676 8899988888888773
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=138.31 Aligned_cols=506 Identities=12% Similarity=0.087 Sum_probs=286.7
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEE-----e--C-CEEEEEEcccceEEe-eecCCccceeE-EEE
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVC-----T--S-NTVSIFSTSTGLQIS-SLEGHKAPVTT-VIV 122 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~-----~--~-~~i~iwd~~~~~~~~-~l~~h~~~V~~-v~~ 122 (762)
..++.+++.+++.+.+..|-+-|.. ..|+|||+.+|.. + + ..+.+.+.+.|+.-+ ++-| ..-+. .-|
T Consensus 59 DdlWe~slk~g~~~ritS~lGVvnn-~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG--r~fT~VaG~ 135 (668)
T COG4946 59 DDLWEYSLKDGKPLRITSGLGVVNN-PKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG--RRFTRVAGW 135 (668)
T ss_pred hHHHHhhhccCCeeEEecccceecc-ccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec--cccceeecc
Confidence 3444455668888999999999998 9999999999983 2 2 689999999887543 2223 33333 459
Q ss_pred eCCCCcccceeeeEEeeecCCeEEEE----eCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 123 VPASTPATKILSYCWTASLDGTIKYW----DFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 123 s~~~~~~~~l~~~l~s~s~d~~i~vW----d~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
+||| ..+++...-.-..-| .+. +|-....+.. .+.+.+.+. |+ +.++. .+.-
T Consensus 136 ~~dg-------~iiV~TD~~tPF~q~~~lYkv~~dg~~~e~Lnl-Gpathiv~~---------dg-----~ivig-Rnty 192 (668)
T COG4946 136 IPDG-------EIIVSTDFHTPFSQWTELYKVNVDGIKTEPLNL-GPATHIVIK---------DG-----IIVIG-RNTY 192 (668)
T ss_pred CCCC-------CEEEEeccCCCcccceeeeEEccCCceeeeccC-CceeeEEEe---------CC-----EEEEc-cCcc
Confidence 9999 455555432222212 111 1110111110 122222210 00 00000 0000
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC--CeEEEEEccCchhhhheeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ--RKLLIWKVPDVEAERVVMRK 275 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--~~i~iwd~~~~~~~~~~~~~ 275 (762)
.+-+|.. +-|+..|.|.+ -..+.........-.+.|.+..+-.+.-++.+.-+ |.+.--|+......
T Consensus 193 dLP~WK~---YkGGtrGklWi--s~d~g~tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlr------ 261 (668)
T COG4946 193 DLPHWKG---YKGGTRGKLWI--SSDGGKTFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLR------ 261 (668)
T ss_pred cCccccc---ccCCccceEEE--EecCCcceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhh------
Confidence 0000110 44566665433 33333222444555666666666555555555544 44555555554432
Q ss_pred eeeccCc--CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccc-----cccc----------cccccC-----
Q 040987 276 ITLHHTK--KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKM-----NLNL----------MNNEEE----- 333 (762)
Q Consensus 276 ~~~~~~~--~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-----~~~~----------~~~~~~----- 333 (762)
.|++ .-.+-..+.||+.++.. ..|.|.+||..+.+.-+..-+.. .... |+....
T Consensus 262 ---rHTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~ 337 (668)
T COG4946 262 ---RHTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIAL 337 (668)
T ss_pred ---hcCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEE
Confidence 2321 22233456689887764 56789999987664322111100 0000 000000
Q ss_pred --CCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE
Q 040987 334 --RPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG-VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS 410 (762)
Q Consensus 334 --~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 410 (762)
+........+.--..--+|...|.-..+..+++-++.|..|| .+-++|.++++.......-+.|.++..+++|+.++
T Consensus 338 VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~v 417 (668)
T COG4946 338 VSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVV 417 (668)
T ss_pred EecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEE
Confidence 011111112222222335777788888888888899999998 89999999999887777778999999999999999
Q ss_pred EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc----eEEEEEcCCCCceeeEEe
Q 040987 411 ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY----CIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~~~ 486 (762)
++.....+.++|++++.....-+... +.|..++|+|+++++|.+--+| .|+++|+.+++.......
T Consensus 418 vaNdr~el~vididngnv~~idkS~~----------~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ 487 (668)
T COG4946 418 VANDRFELWVIDIDNGNVRLIDKSEY----------GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP 487 (668)
T ss_pred EEcCceEEEEEEecCCCeeEeccccc----------ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC
Confidence 99888899999999987655444333 7899999999999999987664 689999988765433221
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE------------------
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI------------------ 548 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~------------------ 548 (762)
...-.+-+|.||+++|..-+.+.-+.. .|..+.=+....-..++.....
T Consensus 488 -----------ta~DfsPaFD~d~ryLYfLs~RsLdPs--~Drv~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea 554 (668)
T COG4946 488 -----------TAYDFSPAFDPDGRYLYFLSARSLDPS--NDRVIFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEA 554 (668)
T ss_pred -----------cccccCcccCCCCcEEEEEeccccCCC--CCeeEEEEEEeeeccceEEEecCCCCChhhcCchhcCccc
Confidence 222345688999998877764322211 2333322222211111100000
Q ss_pred -------------eecCCCCCceEEEEEcCCCCeEEE--------------EeCCCcEEEEEcccccccccccCCceeee
Q 040987 549 -------------VYEPHRDAGISAVAFHPNRRAAVS--------------SSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 549 -------------~~~~h~~~~v~~~~~spd~~~l~~--------------~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
.+.-. .+.-.+++=-.+|+.+.. +-.-|.+.+||+++.+....
T Consensus 555 ~e~dle~ie~r~eP~pVe-e~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e~--------- 624 (668)
T COG4946 555 GEVDLEGIEDRVEPFPVE-EGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEEY--------- 624 (668)
T ss_pred cceehhhhcccccccccC-ccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHHH---------
Confidence 00000 111122222222322211 11235666777766554332
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
...++++..|+||+.+..-.|+.+++++++.
T Consensus 625 ------k~nvss~rlS~D~s~ilvk~d~kl~~f~vek 655 (668)
T COG4946 625 ------KDNVSSFRLSSDGSKILVKLDGKLRLFDVEK 655 (668)
T ss_pred ------hcccceEEEcCCCCEEEEEeCCeEEEEeccc
Confidence 4678999999999999986699999999986
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-19 Score=184.91 Aligned_cols=249 Identities=14% Similarity=0.192 Sum_probs=191.9
Q ss_pred cceeEEEEecCCCE----EEEEecCCeEEEEecCCC---ce----eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEE
Q 040987 354 SEVSVLIFSSDGAY----LYSGGKEGVLVVWQLDTG---KK----KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLL 421 (762)
Q Consensus 354 ~~v~~~~~s~~g~~----l~s~~~dg~i~~wd~~~~---~~----~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~ 421 (762)
...+.++|.+.|.. |+.|..||.|.+||...- .. .....|.+.|..+.|++... +|++|+.+|.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 45688999887765 888889999999998762 22 24667899999999999765 99999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+...+.-....... ....|.+++|+.. .+.|++++.+|.+.|||++..+.+-.+..... ...
T Consensus 145 Dlnn~~tP~~~~~~~--------~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~--------~~~ 208 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQA--------PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPG--------RMH 208 (1049)
T ss_pred ccCCcCCCCCCCCCC--------CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCC--------ccc
Confidence 998743333222111 1268899999985 45678888999999999998877666554332 345
Q ss_pred EEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCc
Q 040987 501 VTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGD 578 (762)
Q Consensus 501 v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~ 578 (762)
+..++|+|+.. .|++++.+ ...-.|.+||++........ +++| ...|.++.|++.+ ++|++++.|+.
T Consensus 209 ~S~l~WhP~~aTql~~As~d------d~~PviqlWDlR~assP~k~----~~~H-~~GilslsWc~~D~~lllSsgkD~~ 277 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGD------DSAPVIQLWDLRFASSPLKI----LEGH-QRGILSLSWCPQDPRLLLSSGKDNR 277 (1049)
T ss_pred eeeeeeCCCCceeeeeecCC------CCCceeEeecccccCCchhh----hccc-ccceeeeccCCCCchhhhcccCCCC
Confidence 88999999864 45555421 14568999998865543332 3688 9999999999965 89999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCCe
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~~ 640 (762)
|.+|+.++++.+..++ ....++..+.|+|... .+++++ ||.|.||.+.++.
T Consensus 278 ii~wN~~tgEvl~~~p-----------~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 278 IICWNPNTGEVLGELP-----------AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeEecCCCceEeeecC-----------CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999887774 3568899999999776 667777 9999999998653
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.5e-16 Score=155.63 Aligned_cols=321 Identities=16% Similarity=0.154 Sum_probs=203.4
Q ss_pred CEEEEEe--CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 86 KRLLVCT--SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 86 ~~la~~~--~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
+++++.. ++.|.|.|.++.+.+.++......-..+.|+||| +++++++.|+.|.++|+.+++.+++++...
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dg-------r~~yv~~rdg~vsviD~~~~~~v~~i~~G~ 78 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDG-------RYLYVANRDGTVSVIDLATGKVVATIKVGG 78 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-S-------SEEEEEETTSEEEEEETTSSSEEEEEE-SS
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCC-------CEEEEEcCCCeEEEEECCcccEEEEEecCC
Confidence 4555554 5999999999999999998655544557899999 678888999999999999999888876432
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
....+++
T Consensus 79 -------------------------------------------------------------------------~~~~i~~ 85 (369)
T PF02239_consen 79 -------------------------------------------------------------------------NPRGIAV 85 (369)
T ss_dssp -------------------------------------------------------------------------EEEEEEE
T ss_pred -------------------------------------------------------------------------CcceEEE
Confidence 2356789
Q ss_pred CCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeec------cCcCeEEEEEcCCCcEEEEe-ecCCeEEEEeccCCc
Q 040987 244 SSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLH------HTKKLTVLAFHPTQRIVAAG-DVTGRILIWRGFGDR 314 (762)
Q Consensus 244 spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~~~~sp~~~~l~~~-~~dg~v~vw~~~~~~ 314 (762)
|+||++++++ ..+.+.++|..+.+.. +.+..+ ....+.++..+|....++.. -..+.|.+.|.....
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v----~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPV----KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EE----EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred cCCCCEEEEEecCCCceeEeccccccce----eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9999999855 5899999999998754 222211 23467888889988855544 445888888875543
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecCCCceeccC--
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG-GKEGVLVVWQLDTGKKKFLP-- 391 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~i~~wd~~~~~~~~~~-- 391 (762)
.+. ..............|+|++++++.+ ..+..|.++|.++++.....
T Consensus 162 ~~~-----------------------------~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~ 212 (369)
T PF02239_consen 162 NLK-----------------------------VTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT 212 (369)
T ss_dssp CEE-----------------------------EEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-
T ss_pred ccc-----------------------------eeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec
Confidence 221 1122233446678999999988765 45578999999988764322
Q ss_pred ---CCCCCeEEEE-------e--CCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 392 ---RIGSPLLYFT-------E--SPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 392 ---~~~~~v~~~~-------~--s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.++.+...+- | ...+...+..-....+.+||..+.+.++++.... +. .-+..+|+++
T Consensus 213 g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G----------~g-lFi~thP~s~ 281 (369)
T PF02239_consen 213 GKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG----------GG-LFIKTHPDSR 281 (369)
T ss_dssp SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS----------SS---EE--TT-S
T ss_pred cccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC----------Cc-ceeecCCCCc
Confidence 2223333221 2 1223333233334466678888899999887654 23 6678899999
Q ss_pred EEEEe----ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 460 LVALR----AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 460 ~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
++.+. ...+.|.++|..+.+....+.... ...+..+.|++||+.+..+..+ .++.|.+||
T Consensus 282 ~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~---------~~~~~h~ef~~dG~~v~vS~~~-------~~~~i~v~D 345 (369)
T PF02239_consen 282 YVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP---------GKRVVHMEFNPDGKEVWVSVWD-------GNGAIVVYD 345 (369)
T ss_dssp EEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH---------T--EEEEEE-TTSSEEEEEEE---------TTEEEEEE
T ss_pred cEEeeccCCCCCceEEEEECcCcceeEEEeccC---------CCcEeccEECCCCCEEEEEEec-------CCCEEEEEE
Confidence 99988 445899999999875544432211 2248899999999988887753 445899999
Q ss_pred ecCCCceeEEE
Q 040987 536 SGTQNKEFTLS 546 (762)
Q Consensus 536 ~~~~~~~~~~~ 546 (762)
..+.+....+.
T Consensus 346 ~~Tl~~~~~i~ 356 (369)
T PF02239_consen 346 AKTLKEKKRIP 356 (369)
T ss_dssp TTTTEEEEEEE
T ss_pred CCCcEEEEEEE
Confidence 99998776664
|
... |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=152.65 Aligned_cols=263 Identities=13% Similarity=0.202 Sum_probs=190.5
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEE-EEEcC-------CCcEEEEeecCCe
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV-LAFHP-------TQRIVAAGDVTGR 304 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~-~~~sp-------~~~~l~~~~~dg~ 304 (762)
.|...+.++.|+.....+.+++|..+.+|.-.+.+.. ....-...-+.. +-.-+ ....++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-----~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-----EVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhh-----hhhhCCcccCCccccccccccCCCCCcceEEEEcCCce
Confidence 4556677999999998888888887777754433322 111111111111 11111 2236788889999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+.+.+-.. +.......|.+.+.+-.|+|||.-|++++.||.|++|.-..
T Consensus 87 f~il~k~~-------------------------------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG 135 (737)
T KOG1524|consen 87 FVILNKSA-------------------------------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG 135 (737)
T ss_pred EEEecccc-------------------------------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc
Confidence 99887432 23356778999999999999999999999999999998655
Q ss_pred CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 385 GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
.-...+.....+|.|++|.|+.+.++.+ ..+.+.|=-+.....+-..+.|. +-|.++.|++....+++|
T Consensus 136 MLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k~i~WkAHD----------GiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 136 MLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSKIIRWRAHD----------GLVLSLSWSTQSNIIASG 204 (737)
T ss_pred hHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccceeEEeccC----------cEEEEeecCccccceeec
Confidence 4444566778899999999999887765 56677776666555555666665 899999999999999999
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
++|-..++||......... . .|..+|++++|.|| +.++.++. +++++
T Consensus 205 GED~kfKvWD~~G~~Lf~S-----~------~~ey~ITSva~npd-~~~~v~S~----------nt~R~----------- 251 (737)
T KOG1524|consen 205 GEDFRFKIWDAQGANLFTS-----A------AEEYAITSVAFNPE-KDYLLWSY----------NTARF----------- 251 (737)
T ss_pred CCceeEEeecccCcccccC-----C------hhccceeeeeeccc-cceeeeee----------eeeee-----------
Confidence 9999999999764322111 1 12778999999999 77777753 34441
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
. .+. .+.|..++||+||..++.|+..|.+.+
T Consensus 252 -~----~p~-~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 -S----SPR-VGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred -c----CCC-ccceEEEEEcCCCceeeccccCceEEE
Confidence 1 233 778999999999999999998887654
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-16 Score=141.92 Aligned_cols=331 Identities=11% Similarity=0.126 Sum_probs=220.8
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..+..+.|..+...|..|+.|| .++|+......+ .......-.|..+-|
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~------------------------------~~~~~~~~~IvEmLF 54 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC------------------------------FSKDTEGVSIVEMLF 54 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh------------------------------hcccCCCeEEEEeec
Confidence 4566777999999999999998 678876443211 111112234566667
Q ss_pred ecCCCEEEEEecC--CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 362 SSDGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 362 s~~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+.. +++..+.+ +.+++.+.+.+..+.....+.+|.++.++. ++|++.-. ..|+|||+++.++++++......
T Consensus 55 SSS--LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n- 128 (391)
T KOG2110|consen 55 SSS--LVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNR--KRLVVCLE-ESIYIYDIKDMKLLHTIETTPPN- 128 (391)
T ss_pred ccc--eeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEcc--ceEEEEEc-ccEEEEecccceeehhhhccCCC-
Confidence 654 55555543 459999999888877777888999999865 45665544 45999999999999988754211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
...+.++.+++.+.+++.-+ ..|.|.+||..+-+....+..+ .+.+.+++|+++|.+||+++
T Consensus 129 ------~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH----------~~~lAalafs~~G~llATAS 192 (391)
T KOG2110|consen 129 ------PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH----------KGPLAALAFSPDGTLLATAS 192 (391)
T ss_pred ------ccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec----------CCceeEEEECCCCCEEEEec
Confidence 14566777777777998764 4589999999988877776643 78899999999999999999
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
. ....||++.+.+++..+++.. |-....|.+++|+||+++|++.+..++|.+|.+.............
T Consensus 193 e--------KGTVIRVf~v~~G~kl~eFRR----G~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~ 260 (391)
T KOG2110|consen 193 E--------KGTVIRVFSVPEGQKLYEFRR----GTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTA 260 (391)
T ss_pred c--------CceEEEEEEcCCccEeeeeeC----CceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCC
Confidence 4 455789999999999998864 3325578999999999999999999999999997655222111000
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCe
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQ 674 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~ 674 (762)
|. -.+.+-.+.+ ++. .+.-.+||....---..+.... ..+..+.=.+...++..++.||.
T Consensus 261 ~~--------------~~~~~~sk~~-~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~-- 323 (391)
T KOG2110|consen 261 GT--------------SWFGKVSKAA-TSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH-- 323 (391)
T ss_pred CC--------------cccchhhhhh-hhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe--
Confidence 00 0000000001 111 1122234444322222222111 12333333357889999999998
Q ss_pred EEEEECC--CCceeeEEEEeec
Q 040987 675 LSVWNMS--KLSISWSYLLHVE 694 (762)
Q Consensus 675 v~vwd~~--~~~~~~~~~~~~~ 694 (762)
++.|.+. +|...+.+..+.-
T Consensus 324 ~y~y~l~~~~gGec~lik~h~~ 345 (391)
T KOG2110|consen 324 LYSYRLPPKEGGECALIKRHFL 345 (391)
T ss_pred EEEEEcCCCCCceeEEEEeecc
Confidence 9998765 4667776665543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-16 Score=134.79 Aligned_cols=250 Identities=14% Similarity=0.183 Sum_probs=183.9
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.|.+-+++|.+++|++|..+|.|.+..+.+-..-.. ..+....+...++|.++|+.++|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa--------------------~~~gk~~iv~eqahdgpiy~~~f~ 71 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA--------------------EPPGKLKIVPEQAHDGPIYYLAFH 71 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc--------------------CCCCCcceeeccccCCCeeeeeee
Confidence 466778999999999999999999999854311100 001112345568999999999998
Q ss_pred cCCCEEEEEecCCeEEEEecCCCce---------eccCCC-----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKK---------KFLPRI-----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~---------~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
. .+|++++. |.|+-|..+.... ...+.+ -..|.++...|..+.++.++.|+.++-||+++|+.
T Consensus 72 d--~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i 148 (325)
T KOG0649|consen 72 D--DFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI 148 (325)
T ss_pred h--hheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEE
Confidence 3 46777764 9999997654332 111111 13588899999888888888999999999999999
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.+++++|. ..+.+++--.....+++|++||++++||.++++.+..+...........+....|.+++-
T Consensus 149 ~r~~rGHt----------DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~-- 216 (325)
T KOG0649|consen 149 QREYRGHT----------DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV-- 216 (325)
T ss_pred EEEEcCCc----------ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--
Confidence 99999998 788888885555679999999999999999999888776543322111112344555554
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
+..+|++|+ ...+.+|+++..+....++. ...+..+.|-. +.+++++..+.+.-|.+..
T Consensus 217 ~edWlvCGg----------Gp~lslwhLrsse~t~vfpi-------pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 217 NEDWLVCGG----------GPKLSLWHLRSSESTCVFPI-------PARVHLVDFVD--DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred cCceEEecC----------CCceeEEeccCCCceEEEec-------ccceeEeeeec--ceEEEeccccceeeeeecc
Confidence 566888884 56899999999988777754 55678888864 4778888778899998854
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-18 Score=164.53 Aligned_cols=269 Identities=17% Similarity=0.255 Sum_probs=196.1
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+..|.+.|+.++|.|-...|++++.||.+.+|++.... .....+.+++.+|++|.+
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----------------------~s~~~~~epi~tfraH~g 345 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----------------------KSAEKDVEPILTFRAHEG 345 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----------------------CccccceeeeEEEecccC
Confidence 3566789999999999999999999999999999993311 011234467889999999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCc-------e----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------K----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+|.|++..+++.++++|+.||+|+.|++.... . -.+.+|...+..+++|+....|++++.||+++.|+.
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~ 425 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEP 425 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeecc
Confidence 99999999999999999999999999654211 1 246778899999999999999999999999999998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
....+ .++..... .+...++.+-... ++....+.....+++.+.+....+........+.......+..
T Consensus 426 ~~~~~-~~f~~~~e--------~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~ 494 (577)
T KOG0642|consen 426 TEESP-CTFGEPKE--------HGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK 494 (577)
T ss_pred CCcCc-cccCCccc--------cCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence 86655 33333221 0233444443322 1111222333333333333322332222222222222456788
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+..+|.+.+.+++. .++.|+++|..++..+... ..| ...++++++.|+|.+|++++.|+.+++|.
T Consensus 495 vVs~~~~~~~~~~h---------ed~~Ir~~dn~~~~~l~s~-----~a~-~~svtslai~~ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 495 VVSHPTADITFTAH---------EDRSIRFFDNKTGKILHSM-----VAH-KDSVTSLAIDPNGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred EEecCCCCeeEecc---------cCCceecccccccccchhe-----eec-cceecceeecCCCceEEeecCCceeehhh
Confidence 89999999999888 8999999999999887766 467 88999999999999999999999999999
Q ss_pred cccccccc
Q 040987 584 CNDELQQK 591 (762)
Q Consensus 584 ~~~~~~~~ 591 (762)
+.......
T Consensus 560 ld~k~~~~ 567 (577)
T KOG0642|consen 560 LDVKTCVL 567 (577)
T ss_pred ccchheee
Confidence 97655443
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.3e-15 Score=145.63 Aligned_cols=361 Identities=13% Similarity=0.106 Sum_probs=234.6
Q ss_pred EEEecCCCeEEEEecCC-cceeeeecC---cccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEE
Q 040987 46 FAVARSSGLCRTAEYPA-VNSKMIRGG---RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVI 121 (762)
Q Consensus 46 ~a~~~~~g~i~~~~~~~-~~~~~~~~h---~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~ 121 (762)
+++-++ -.+.+|+... .......++ ...... .++|++|+++|.+.+..+.|++..++..+.+...- .+.++.
T Consensus 5 ~aVRsS-e~~~l~~~~~~~~~~~~f~~~~~~~~~~v-~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~ 80 (566)
T KOG2315|consen 5 YAVRSS-EGFYLFNGPGSKDAVTVFEQNKTSRPCNV-FAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELK--KTYDLL 80 (566)
T ss_pred EEEEcc-ceeEEeccCCccccccccccCCCCCccee-EEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccc--eeeeee
Confidence 444333 3456777664 333334343 233443 78999999999999999999999988655555433 799999
Q ss_pred EeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCc
Q 040987 122 VVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTK 201 (762)
Q Consensus 122 ~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (762)
|||.| .||.|-- .-.+|.-.+.
T Consensus 81 fSP~g-------~yL~T~e---~~~i~~~~~~------------------------------------------------ 102 (566)
T KOG2315|consen 81 FSPKG-------NYLLTWE---PWAIYGPKNA------------------------------------------------ 102 (566)
T ss_pred ecccc-------ccccccc---ccccccCCCC------------------------------------------------
Confidence 99999 5655421 1111111100
Q ss_pred CCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 202 SHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 202 ~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..-.+.+|+++++............. +++.|++|..+.|--..+.+.+|++.+... ....-|.
T Consensus 103 ----------~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~------~~~kl~~ 165 (566)
T KOG2315|consen 103 ----------SNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKT------IQHKLSV 165 (566)
T ss_pred ----------CCCceeeeeeccceehhheehhhhcC-cccccccchhhhhhhhcceEEEEecCCccc------eeeeeec
Confidence 12355666666644443333333333 688999999887766678999999988553 2333467
Q ss_pred cCeEEEEEcCCC--cEEEE-----eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 282 KKLTVLAFHPTQ--RIVAA-----GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 282 ~~v~~~~~sp~~--~~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..|..+.+||.+ ..+|+ .+.-+.|+||........... ..+.+ ...
T Consensus 166 ~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~-------------------------a~ksF--Fka 218 (566)
T KOG2315|consen 166 SGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV-------------------------ANKSF--FKA 218 (566)
T ss_pred cceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh-------------------------hhccc--ccc
Confidence 889999999974 35554 355678999987422111000 00111 111
Q ss_pred ceeEEEEecCCCEEE-EEe--c---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE--EecCCcEEE
Q 040987 355 EVSVLIFSSDGAYLY-SGG--K---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI--SCADNQVHL 420 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~-s~~--~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~d~~i~i 420 (762)
.=..+.|++-|.-|+ .++ - ..++++.++.......-....++|.++.|+++++-+++ |-+-..+.|
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEE
Confidence 223567777665332 222 1 24688888884444444555789999999999976554 556778999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
||++ +.++..+.. +.-..+-|+|.|++++.++.+ |.|.+||+.+.+.+..+..
T Consensus 299 fnlr-~~~v~df~e------------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----------- 354 (566)
T KOG2315|consen 299 FNLR-GKPVFDFPE------------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----------- 354 (566)
T ss_pred EcCC-CCEeEeCCC------------CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc-----------
Confidence 9998 556655533 444789999999999988755 8999999999887776653
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
..-+-..|+|||++++++....... -|+.++||+.....
T Consensus 355 -~~tt~~eW~PdGe~flTATTaPRlr---vdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 355 -ANTTVFEWSPDGEYFLTATTAPRLR---VDNGIKIWHYTGSL 393 (566)
T ss_pred -CCceEEEEcCCCcEEEEEeccccEE---ecCCeEEEEecCce
Confidence 2356679999999999987532222 57889999997553
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.6e-17 Score=156.12 Aligned_cols=259 Identities=12% Similarity=0.126 Sum_probs=183.4
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEE-ecCCCceeccCCCCCCeEE-EEeC-------CCCCeEEEEecCCcEEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVW-QLDTGKKKFLPRIGSPLLY-FTES-------PDPSLSSISCADNQVHLL 421 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~v~~-~~~s-------~~~~~l~~~~~d~~i~i~ 421 (762)
.|...+.++.|+.+...+.+++ |..+.+| |+.+.........+.-+.. +..- .....++.++.||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666778899987765555554 5555555 5544332211111111111 1111 123467888899999888
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+-. ++..+.+..|. +.+.+-.|+|||.-|+++++||.|++|.-... ....+... ...|
T Consensus 91 ~k~-~rVE~sv~AH~----------~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM-LRStl~Q~----------~~~v 148 (737)
T KOG1524|consen 91 NKS-ARVERSISAHA----------AAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM-LRSTVVQN----------EESI 148 (737)
T ss_pred ccc-chhhhhhhhhh----------hhhhhcccCCCCceeeeecCCceEEEEeccch-HHHHHhhc----------Ccee
Confidence 754 66666677766 88899999999999999999999999986432 21111111 5679
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
.|++|.|+.+-++.+. .+.+.|=.+.....+.. ..+| .+-|.++.|++..+++++|++|-..+|
T Consensus 149 ~c~~W~p~S~~vl~c~----------g~h~~IKpL~~n~k~i~-----WkAH-DGiiL~~~W~~~s~lI~sgGED~kfKv 212 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQ----------GGHISIKPLAANSKIIR-----WRAH-DGLVLSLSWSTQSNIIASGGEDFRFKI 212 (737)
T ss_pred EEEEECCCCCceEEec----------CCeEEEeecccccceeE-----Eecc-CcEEEEeecCccccceeecCCceeEEe
Confidence 9999999988877773 35677766665554443 4689 999999999999999999999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
||-........ ..|..+|++++|.|| +.++.++-.++++= ....+.|..++||+||
T Consensus 213 WD~~G~~Lf~S------------~~~ey~ITSva~npd-~~~~v~S~nt~R~~-----------~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 213 WDAQGANLFTS------------AAEEYAITSVAFNPE-KDYLLWSYNTARFS-----------SPRVGSIFNLSWSADG 268 (737)
T ss_pred ecccCcccccC------------Chhccceeeeeeccc-cceeeeeeeeeeec-----------CCCccceEEEEEcCCC
Confidence 99875544333 358899999999999 77887776666621 1245679999999999
Q ss_pred CEEEEEEcCCC
Q 040987 662 EYLVATSWGSK 672 (762)
Q Consensus 662 ~~l~s~~~d~~ 672 (762)
..++.+...|.
T Consensus 269 TQ~a~gt~~G~ 279 (737)
T KOG1524|consen 269 TQATCGTSTGQ 279 (737)
T ss_pred ceeeccccCce
Confidence 99999988875
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=147.40 Aligned_cols=309 Identities=12% Similarity=0.136 Sum_probs=216.8
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhh--hheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAE--RVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
....+|.+.|.++.||.++++||+| .|..+++|++...-.. +.++...-..|...|.|++|.-..++|.+|..+++|
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence 4566799999999999999999965 7889999998743222 113333344677899999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
.+.|+++.+.+. +..-....+.|+.+..+|-.+.|++.+.++.|.+||.+..
T Consensus 130 I~HDiEt~qsi~----------------------------V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 130 IKHDIETKQSIY----------------------------VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Eeeecccceeee----------------------------eecccCcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 999998886553 1111223458999999999999999999999999999865
Q ss_pred c----eeccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 386 K----KKFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 386 ~----~~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
. +......+.....+.|+|.. .+|++.+..+.+.+||.+... .+....+.... +. ....-.++.|+|.|.
T Consensus 182 ~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L---~~-~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 182 QNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL---PQ-ENTEWMGSLWSPSGN 257 (609)
T ss_pred CCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC---cc-cchhhhheeeCCCCC
Confidence 5 23344556678889999965 567778888999999987522 11111111100 00 002236788999999
Q ss_pred EEEEeecCceEEEEEcCCCCceeeEEeecccccCC-CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 460 LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG-DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 460 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
.+++--....-.+||+.+..+.. ++ ..|.+. .-....+.+++|..|-. +++|+ .+-.|++|.+..
T Consensus 258 Q~msiRR~~~P~~~D~~S~R~~V-~k---~D~N~~GY~N~~T~KS~~F~~D~~-v~tGS---------D~~~i~~WklP~ 323 (609)
T KOG4227|consen 258 QFMSIRRGKCPLYFDFISQRCFV-LK---SDHNPNGYCNIKTIKSMTFIDDYT-VATGS---------DHWGIHIWKLPR 323 (609)
T ss_pred eehhhhccCCCEEeeeeccccee-Ee---ccCCCCcceeeeeeeeeeeeccee-eeccC---------cccceEEEecCC
Confidence 98887776667788887643321 11 111110 00133466777766544 88888 778999998753
Q ss_pred CCc------------------eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 539 QNK------------------EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 539 ~~~------------------~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
... ...-...++.|| ..-++.+.|+|...+|++.+-.+.++||.-
T Consensus 324 ~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH-RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 324 ANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH-RSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred CccccCccccCcchhhCchhheecceeEEEecc-cccccceeecCCcceEeccchhhheecccc
Confidence 211 111112356899 889999999999999999999999999964
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=149.20 Aligned_cols=200 Identities=19% Similarity=0.225 Sum_probs=149.8
Q ss_pred eeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
..++|+.+|..|++++.||++|+|+..+...+...... ...|.++.|+|||++|++.+ .+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~----------~~eV~DL~FS~dgk~lasig---------~d- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH----------HAEVKDLDFSPDGKFLASIG---------AD- 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh----------cCccccceeCCCCcEEEEec---------CC-
Confidence 67999999999999999999999997665544333222 67799999999999999998 66
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---C--eEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---R--AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
..+||+.+++........ ... ......+.|+.|+ . .++....-+.|+.|++.....-..++. ...
T Consensus 208 ~~~VW~~~~g~~~a~~t~---~~k-~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~------~~~ 277 (398)
T KOG0771|consen 208 SARVWSVNTGAALARKTP---FSK-DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRL------RKK 277 (398)
T ss_pred ceEEEEeccCchhhhcCC---ccc-chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccch------hhh
Confidence 999999999966554431 122 4456778888877 2 333333446677777754433211110 001
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI-GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l-~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
......|++++.|+||+++|.|+ ||.|-|++..+.+++... +.|..-|+.+.|+||.+++++.+.|.. ..+..+.
T Consensus 278 ~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~--~~v~~l~ 354 (398)
T KOG0771|consen 278 IKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE--AAVTKLA 354 (398)
T ss_pred hhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc--eeEEEEe
Confidence 11346899999999999999999 999999999998877755 568889999999999999999998887 6666543
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-16 Score=164.11 Aligned_cols=304 Identities=11% Similarity=0.172 Sum_probs=205.0
Q ss_pred cCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEEeecCCeEEEEec
Q 040987 234 EMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v~vw~~ 310 (762)
..+....+.|+|-...+++++ ...|+|||.+.++.. .-..........|+.+.+-. |..++++|+.||.|+||+-
T Consensus 1063 n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l--~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLL--NGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred CCCCCceeeecCCCceeEEcCCcceEEEEecccCcee--ccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence 344678889999988888765 788999999988754 11111112345788888765 4568999999999999974
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeec-------cccceeEEEEecCCCEEEEEecCCeEEEEecC
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-------HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD 383 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~ 383 (762)
..... ...+.+..+.+ -.+.=.-+.|.....+|+++|.-..|++||.+
T Consensus 1141 y~~~~-------------------------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1141 YADKW-------------------------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred ccccc-------------------------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 32210 01111111111 11111335676665677777767899999999
Q ss_pred CCceeccC--CCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 384 TGKKKFLP--RIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 384 ~~~~~~~~--~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
......-. +....++++.-+ +.|+.+++|..||.+++||.+.. ..+...+.|... ..|..+.+.+.
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~--------~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV--------EPIVHLSLQRQ 1267 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc--------ccceeEEeecC
Confidence 87664322 233355555543 35799999999999999998763 245555555522 23888999886
Q ss_pred CCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 458 GGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 458 ~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
|-. |++|+.+|.|++||++.......+.....- ......+++..+++...+|+|+ . +.|+||++
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~-----~yGs~lTal~VH~hapiiAsGs---------~-q~ikIy~~ 1332 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW-----EYGSALTALTVHEHAPIIASGS---------A-QLIKIYSL 1332 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeecc-----ccCccceeeeeccCCCeeeecC---------c-ceEEEEec
Confidence 654 999999999999999875322222211100 0022489999999999999997 5 89999999
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
...+.........+.+.+.+.+.|++|+|-.-++|+|+.|.+|.||.....
T Consensus 1333 ~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1333 SGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 866542222212233343677899999999999999999999999987654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.1e-17 Score=168.01 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=164.3
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
+..|++||.+......+..+...+..+.|+|||+.|++.+.+ ..|++||+.+++.... .... +...
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~----------g~~~ 251 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFR----------GHNG 251 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCC----------CccC
Confidence 468999999877766667777889999999999999887654 3699999988754322 1111 2234
Q ss_pred eEEEeCCCCEEEEee-cCceEEE--EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRA-ENYCIHF--YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~-~dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.++|+|||+.|+++. .+|.+.+ ||+.++.. ..+.. + ...+....|+|||+.|+..+. .
T Consensus 252 ~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~----~------~~~~~~~~wSpDG~~i~f~s~--------~ 312 (429)
T PRK01742 252 APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS----G------AGNNTEPSWSPDGQSILFTSD--------R 312 (429)
T ss_pred ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc----C------CCCcCCEEECCCCCEEEEEEC--------C
Confidence 689999999988865 5775554 56655432 22221 1 344678999999998887652 4
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
++...+|++.......... .+ .. ..+.|+|||++|++.+.++ +.+||+.++.......
T Consensus 313 ~g~~~I~~~~~~~~~~~~l-----~~-~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~------------- 370 (429)
T PRK01742 313 SGSPQVYRMSASGGGASLV-----GG-RG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSS------------- 370 (429)
T ss_pred CCCceEEEEECCCCCeEEe-----cC-CC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecC-------------
Confidence 5667888775433222221 23 22 4578999999999888765 6669998776432221
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeC--CCCeEEEEeccccCceeEEEEeCC
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDP--DRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~--~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
......+.|+|||++|++++ ++.+.+|++ .+|+.+..+.+|.+.+..++|+|-
T Consensus 371 ~~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 371 TFLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 11234678999999999987 887777765 357788888888888999999983
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-15 Score=140.49 Aligned_cols=237 Identities=15% Similarity=0.223 Sum_probs=177.3
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.+.. +.|+.|...|..|+..--++|..+.-............|.-+-||.+- --+++...-+.+++.+++.+
T Consensus 7 ti~~-~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSL-------vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 7 TINF-IGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSL-------VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred ceee-eeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccce-------eEEEecCCCceEEEEEcccC
Confidence 3444 678999999999986556788876544332233333456666676643 23444433456999999999
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
..+..+....++.++.+ +.++ +++ +....|.|||+++.+.++.....
T Consensus 79 ~~ICe~~fpt~IL~Vrm----------Nr~R--LvV---------------------~Lee~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 79 TTICEIFFPTSILAVRM----------NRKR--LVV---------------------CLEESIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred ceEEEEecCCceEEEEE----------ccce--EEE---------------------EEcccEEEEecccceeehhhhcc
Confidence 99999988888888865 2222 122 24456999999999999766555
Q ss_pred --cCCCceEEEECCCCCEEEE---EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe-EEE
Q 040987 234 --EMKEPQVITISSSGKYFGI---RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR-ILI 307 (762)
Q Consensus 234 --~~~~v~~~~~spdg~~la~---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~-v~v 307 (762)
+...+.++.+++++.+||. ...|.|.+||+.+-+.. .....|.+.+.+++|+++|.+||+++..|+ |||
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v-----~~I~aH~~~lAalafs~~G~llATASeKGTVIRV 200 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV-----NTINAHKGPLAALAFSPDGTLLATASEKGTVIRV 200 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee-----eEEEecCCceeEEEECCCCCEEEEeccCceEEEE
Confidence 5566777777788889984 26799999999987754 666799999999999999999999999986 799
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeecc--ccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH--PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+.+.+++.+. .++.. ...|++++|+|++++|++.+..++|.++.++..
T Consensus 201 f~v~~G~kl~------------------------------eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 201 FSVPEGQKLY------------------------------EFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred EEcCCccEee------------------------------eeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEeccc
Confidence 9998886554 22221 346899999999999999999999999998865
Q ss_pred c
Q 040987 386 K 386 (762)
Q Consensus 386 ~ 386 (762)
.
T Consensus 251 ~ 251 (391)
T KOG2110|consen 251 S 251 (391)
T ss_pred c
Confidence 5
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-15 Score=134.78 Aligned_cols=264 Identities=13% Similarity=0.140 Sum_probs=189.5
Q ss_pred ccccEEEE--ecCCccccceeeeccCCCceEEEECCCCC----EEEEEeCCeEEEEEccCchhh----hheeeeeeeccC
Q 040987 212 MNGRICKC--NLTESRLAGGVTLAEMKEPQVITISSSGK----YFGIRKQRKLLIWKVPDVEAE----RVVMRKITLHHT 281 (762)
Q Consensus 212 ~d~~i~iw--d~~~~~~~~~~~~~~~~~v~~~~~spdg~----~la~~~~~~i~iwd~~~~~~~----~~~~~~~~~~~~ 281 (762)
..+.|.+. |.++++.+......|.-+++.+.|.||.. -|.+..+..+++|.+...+.. ..........+.
T Consensus 71 ~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~ 150 (364)
T KOG0290|consen 71 YNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFC 150 (364)
T ss_pred cCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccC
Confidence 34555555 44556666555578899999999999874 234455678999998853221 011112234567
Q ss_pred cCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 282 KKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 282 ~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
+++++..|.. |-+++.+.+-|-+..|||++.+... .....+-.|...|..++
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~---------------------------~vkTQLIAHDKEV~DIa 203 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG---------------------------TVKTQLIAHDKEVYDIA 203 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeecccc---------------------------ceeeEEEecCcceeEEE
Confidence 8999999988 6678899999999999999876321 12356778999999999
Q ss_pred EecCC-CEEEEEecCCeEEEEecCCCce---eccCCC-CCCeEEEEeCCC-CCeEEEEec-CCcEEEEEcCC-ceEEEEE
Q 040987 361 FSSDG-AYLYSGGKEGVLVVWQLDTGKK---KFLPRI-GSPLLYFTESPD-PSLSSISCA-DNQVHLLKMPS-MEIIRSI 432 (762)
Q Consensus 361 ~s~~g-~~l~s~~~dg~i~~wd~~~~~~---~~~~~~-~~~v~~~~~s~~-~~~l~~~~~-d~~i~i~d~~~-~~~~~~~ 432 (762)
|..++ +.+++++.||.+++||++..+. ++.... ..+...++|++. -+++++-.. ...|.|.|++. ..++..+
T Consensus 204 f~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L 283 (364)
T KOG0290|consen 204 FLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL 283 (364)
T ss_pred eccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehh
Confidence 99865 5788999999999999998665 233333 567888999875 466766555 45799999986 5677888
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DG 510 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g 510 (762)
++|. +.|..++|.|. ...|++++.|..+.+||+.+.-...... ..... .....|..+.|++ .+
T Consensus 284 ~~H~----------a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d-Pilay----~a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 284 RNHQ----------ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED-PILAY----TAGGEVNQIQWSSSQP 348 (364)
T ss_pred hcCc----------ccccceEecCCCCceeeecCCcceEEEEecccccccCCCC-chhhh----hccceeeeeeecccCC
Confidence 8887 88999999995 5689999999999999997543200000 00000 0166799999996 56
Q ss_pred CeEEEEe
Q 040987 511 SLMSTVD 517 (762)
Q Consensus 511 ~~l~~~~ 517 (762)
.+++.+.
T Consensus 349 Dwiai~~ 355 (364)
T KOG0290|consen 349 DWIAICF 355 (364)
T ss_pred CEEEEEe
Confidence 7888875
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=159.04 Aligned_cols=273 Identities=13% Similarity=0.125 Sum_probs=192.7
Q ss_pred eeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEcc---CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 230 VTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVP---DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
.+..|...++.++|.|-...|+ +..++.+.+|++. ............+.+|.++|.|++++++++.+++|+.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4556888999999999888887 5589999999993 22222234456677999999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
+.|++..+..-. ...+.......+.||.+.|+.+++++...+|++++.||++++|+....
T Consensus 369 ~~w~~p~n~dp~--------------------ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 369 RCWNLPPNQDPD--------------------DSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEE 428 (577)
T ss_pred eeeccCCCCCcc--------------------cccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCc
Confidence 999875221100 000111234678999999999999999999999999999999998776
Q ss_pred ceecc--CCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 386 KKKFL--PRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 386 ~~~~~--~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
....+ ....+...++.+-... ...++....+.-.++++.....+..+.....+. ......+..+...|.+.+.+
T Consensus 429 ~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~---~~~~~~in~vVs~~~~~~~~ 505 (577)
T KOG0642|consen 429 SPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPG---PRRYPQINKVVSHPTADITF 505 (577)
T ss_pred CccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCc---ccccCccceEEecCCCCeeE
Confidence 66222 2222233344442221 222222223333344444444444443322111 11113566788899999999
Q ss_pred EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce
Q 040987 463 LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 463 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 542 (762)
++..|+.|+++|..++..+...... ...++++++.|+|-+|++++ .|+.+++|.+....+.
T Consensus 506 ~~hed~~Ir~~dn~~~~~l~s~~a~----------~~svtslai~~ng~~l~s~s---------~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 506 TAHEDRSIRFFDNKTGKILHSMVAH----------KDSVTSLAIDPNGPYLMSGS---------HDGSVRLWKLDVKTCV 566 (577)
T ss_pred ecccCCceecccccccccchheeec----------cceecceeecCCCceEEeec---------CCceeehhhccchhee
Confidence 9999999999999999887776554 66799999999999999999 8999999999766554
Q ss_pred eE
Q 040987 543 FT 544 (762)
Q Consensus 543 ~~ 544 (762)
..
T Consensus 567 ~e 568 (577)
T KOG0642|consen 567 LE 568 (577)
T ss_pred ec
Confidence 43
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=164.49 Aligned_cols=234 Identities=13% Similarity=0.066 Sum_probs=159.1
Q ss_pred CccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 211 TMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
..+..|.+||.+.... ..+..+...+..++|||||+.|+... +..|++||+.+++.. ......+....
T Consensus 181 ~~~~~i~i~d~dg~~~--~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~------~l~~~~g~~~~ 252 (429)
T PRK01742 181 SQPYEVRVADYDGFNQ--FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK------VVASFRGHNGA 252 (429)
T ss_pred CceEEEEEECCCCCCc--eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE------EEecCCCccCc
Confidence 3468999999876553 35566778899999999999998542 247999999887642 11122233457
Q ss_pred EEEcCCCcEEEEee-cCCeEEEE--eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPTQRIVAAGD-VTGRILIW--RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~~~~l~~~~-~dg~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++|+|||++|++++ .+|.+.|| |+.++. ...+..+...+..+.|+|
T Consensus 253 ~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-------------------------------~~~lt~~~~~~~~~~wSp 301 (429)
T PRK01742 253 PAFSPDGSRLAFASSKDGVLNIYVMGANGGT-------------------------------PSQLTSGAGNNTEPSWSP 301 (429)
T ss_pred eeECCCCCEEEEEEecCCcEEEEEEECCCCC-------------------------------eEeeccCCCCcCCEEECC
Confidence 89999999888764 57776666 443332 234455666678899999
Q ss_pred CCCEEEEEe-cCCeEEEEecC--CCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 364 DGAYLYSGG-KEGVLVVWQLD--TGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 364 ~g~~l~s~~-~dg~i~~wd~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
||+.|+.++ .++...+|++. ++....+ .+.. ....|+|||+.|++.+.+ .+.+||+.+++........
T Consensus 302 DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~~----- 372 (429)
T PRK01742 302 DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSSTF----- 372 (429)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCCC-----
Confidence 999877655 46777777654 3333222 2222 457899999999888765 5667999887654332221
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC--CCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL--DDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
....+.|+|||++|++++.++...+|++. +++....+... ...+...+|+|-
T Consensus 373 -------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~----------~g~~~~p~wsp~ 426 (429)
T PRK01742 373 -------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGS----------DGQVKFPAWSPY 426 (429)
T ss_pred -------CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCC----------CCCCCCcccCCC
Confidence 12467899999999999999888877753 45444444321 345677788874
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-16 Score=144.20 Aligned_cols=212 Identities=14% Similarity=0.185 Sum_probs=168.7
Q ss_pred eeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCCC-CCeEEEEecCC
Q 040987 347 TTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESPD-PSLSSISCADN 416 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~ 416 (762)
-.+.+|..+|..+.|+| +.+.|++|+.|.+|.+|++-.+.. ..+.+|...|.-++|+|. .+.|++++.|+
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 46789999999999999 557899999999999999875543 356778889999999995 46788899999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|.+|++.+|+.+-++. |. ..|.++.|+.||.++++.+.|..|++||.++++.+.+-..+.
T Consensus 155 ~v~iWnv~tgeali~l~-hp----------d~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he-------- 215 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HP----------DMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE-------- 215 (472)
T ss_pred eEEEEeccCCceeeecC-CC----------CeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc--------
Confidence 99999999999888877 65 789999999999999999999999999999998776652221
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-C
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-Y 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~ 575 (762)
......+.|-.+|..+.+|..+ -.+.++-+||...-+....+..+ .. .+.|.-.-|.||.+++..++ .
T Consensus 216 -G~k~~Raifl~~g~i~tTGfsr------~seRq~aLwdp~nl~eP~~~~el---Dt-SnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 216 -GAKPARAIFLASGKIFTTGFSR------MSERQIALWDPNNLEEPIALQEL---DT-SNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred -CCCcceeEEeccCceeeecccc------ccccceeccCcccccCcceeEEe---cc-CCceEEeeecCCCCEEEEEecC
Confidence 2345677888899955555311 15679999998877665444432 22 56787788899988876555 6
Q ss_pred CCcEEEEEccccc
Q 040987 576 GGDFKVWICNDEL 588 (762)
Q Consensus 576 dg~i~iwd~~~~~ 588 (762)
|+.|+.|.+....
T Consensus 285 D~~IRYyEit~d~ 297 (472)
T KOG0303|consen 285 DSSIRYFEITNEP 297 (472)
T ss_pred CcceEEEEecCCC
Confidence 8999999997655
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.8e-16 Score=140.48 Aligned_cols=212 Identities=11% Similarity=0.138 Sum_probs=169.0
Q ss_pred CCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 235 MKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+|+|.+|++|+..+|.+ ....|.||.....+.- .....+..|...|+.+.|+|..+.|++++.|..-++|....+
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w--~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW--EPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCc--eeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence 5689999999999999966 6679999998877743 455777899999999999999999999999999999997444
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK----- 388 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~----- 388 (762)
.. +++.-.+..++...+++.|+|.++.|++|+....|.+|-++....-
T Consensus 88 ~~---------------------------WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKh 140 (361)
T KOG1523|consen 88 GT---------------------------WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKH 140 (361)
T ss_pred Ce---------------------------eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhh
Confidence 32 2455677889999999999999999999999999999988765542
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC--------CC----CCCCcccCceeeEEEeC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL--------PC----PLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--------~~----~~~~~~~~~v~~~~~s~ 456 (762)
....+...|.++.|+|++-++++|+.|+..+++..- ++.+..... +. .......+.+..+.|+|
T Consensus 141 ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hCCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 334566789999999999999999999999998652 111111100 00 00012237899999999
Q ss_pred CCCEEEEeecCceEEEEEcCCCC
Q 040987 457 DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
+|..|+..+.|..+.+-|.....
T Consensus 217 sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 217 SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCEeeEecCCCceEEeecCCCc
Confidence 99999999999999999987664
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.5e-16 Score=161.23 Aligned_cols=300 Identities=14% Similarity=0.176 Sum_probs=210.4
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC----CCCCeEEEEeC--CCCCeEEEEecCCcEEEEEcCC-
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----IGSPLLYFTES--PDPSLSSISCADNQVHLLKMPS- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----~~~~v~~~~~s--~~~~~l~~~~~d~~i~i~d~~~- 425 (762)
......+.|+|=...++++...-.|++||.+.++...-.. ....|+.+.+- .|..++++++.||.|+||+--.
T Consensus 1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 3355678888888889998877899999999988753222 23467787773 3567899999999999997532
Q ss_pred ----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 426 ----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++..+.+........ .+.-.-+.|.....+|+++++-..|+|||.........++... ...+
T Consensus 1144 ~~~~~eLVTaw~~Ls~~~~~~---r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s---------~t~v 1211 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGA---RGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS---------STLV 1211 (1387)
T ss_pred ccCCceeEEeeccccccCccC---CCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC---------Cccc
Confidence 23444333332211111 1222446677766677777778899999999877766665432 4456
Q ss_pred EEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc--eEEEEEcCCCCe-EEEEeCCC
Q 040987 502 TLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG--ISAVAFHPNRRA-AVSSSYGG 577 (762)
Q Consensus 502 ~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~--v~~~~~spd~~~-l~~~~~dg 577 (762)
+++.-+- .|+.+++|. .||.|++||.+......... .+..| ... |..+.+-+.|-. |++|+.||
T Consensus 1212 TaLS~~~~~gn~i~AGf---------aDGsvRvyD~R~a~~ds~v~--~~R~h-~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1212 TALSADLVHGNIIAAGF---------ADGSVRVYDRRMAPPDSLVC--VYREH-NDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eeecccccCCceEEEee---------cCCceEEeecccCCccccce--eeccc-CCcccceeEEeecCCCcceeeeccCC
Confidence 6665543 468899988 89999999998665432221 23566 555 999999987654 99999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecc-------ccC
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGE-------TLT 650 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~-------~~~ 650 (762)
.|++||++.......+. .......++..+++..+++...+|+|+.+.|+||++. |+.+..++. ..+
T Consensus 1280 ~I~~~DlR~~~~e~~~~------iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~l~~~k~n~~F~~q~~g 1352 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKETFLT------IVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQLNIIKYNPGFMGQRIG 1352 (1387)
T ss_pred eEEEEecccCcccccce------eeeccccCccceeeeeccCCCeeeecCcceEEEEecC-hhhhcccccCcccccCcCC
Confidence 99999998753322221 0000001235899999999999999988999999998 444444432 234
Q ss_pred ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 651 PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 651 ~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+.+++|+|---+||.|+.|.. |.||....+++
T Consensus 1353 s~scL~FHP~~~llAaG~~Ds~--V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1353 SVSCLAFHPHRLLLAAGSADST--VSIYSCEKPRL 1385 (1387)
T ss_pred CcceeeecchhHhhhhccCCce--EEEeecCCcCC
Confidence 5899999999889999999988 99998876543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.2e-16 Score=132.98 Aligned_cols=256 Identities=11% Similarity=0.077 Sum_probs=179.6
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
.|.+-+++|.+++|+++..+|.|.++.+.+...-......+.++-....|++.+..++|.. .+|++++ ||.|+-|..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 3556678999999999999999999998752111111111111112244568999999983 3566654 599998876
Q ss_pred CCCCc------eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 476 LDDRG------ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 476 ~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.... +.+.....+. ..-....|+++-..|..+-+++++ +|+.++-||+++++...++
T Consensus 89 ~E~~es~~~K~lwe~~~P~~~---~~~evPeINam~ldP~enSi~~Ag---------GD~~~y~~dlE~G~i~r~~---- 152 (325)
T KOG0649|consen 89 NEEEESLATKRLWEVKIPMQV---DAVEVPEINAMWLDPSENSILFAG---------GDGVIYQVDLEDGRIQREY---- 152 (325)
T ss_pred hhhhhhccchhhhhhcCcccc---CcccCCccceeEeccCCCcEEEec---------CCeEEEEEEecCCEEEEEE----
Confidence 54332 1111111110 001145689999999888887777 8999999999999876655
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-cCCCCeEEEEEcCCCcEEEEEcC
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-YKKKAMTAAAFSADGSVLAVAAE 628 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s~dg~~la~~~d 628 (762)
.+| .+.|.+++-......+.+|++||++|+||.++++....++ .+....... .-...|.+++- +..+|++|+.
T Consensus 153 -rGH-tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie--~yk~~~~lRp~~g~wigala~--~edWlvCGgG 226 (325)
T KOG0649|consen 153 -RGH-TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE--PYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG 226 (325)
T ss_pred -cCC-cceeeeeeecccCcceeecCCCccEEEEeccccceeEEec--cccChhhcCcccCceeEEEec--cCceEEecCC
Confidence 799 9999999986666789999999999999999999887765 111111111 12456777775 4559999998
Q ss_pred CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 629 TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 629 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
..+.+|++.+.++..++. -..++..+.|-. +.+++++..+. |.-|.+.
T Consensus 227 p~lslwhLrsse~t~vfp-ipa~v~~v~F~~--d~vl~~G~g~~--v~~~~l~ 274 (325)
T KOG0649|consen 227 PKLSLWHLRSSESTCVFP-IPARVHLVDFVD--DCVLIGGEGNH--VQSYTLN 274 (325)
T ss_pred CceeEEeccCCCceEEEe-cccceeEeeeec--ceEEEeccccc--eeeeeec
Confidence 899999999998888775 456688889966 46777776655 8888764
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-16 Score=143.80 Aligned_cols=283 Identities=12% Similarity=0.117 Sum_probs=195.7
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCC--CCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccC-cC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS--GKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHT-KK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-~~ 283 (762)
|++.++|.|++||..+++.+ +...+++..++.+.|..+ ...+. ++.||+|++||++...... +.....+. .+
T Consensus 44 av~lSngsv~lyd~~tg~~l-~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a---~~~~~~~~~~~ 119 (376)
T KOG1188|consen 44 AVSLSNGSVRLYDKGTGQLL-EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA---RISWTQQSGTP 119 (376)
T ss_pred EEEecCCeEEEEeccchhhh-heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh---heeccCCCCCc
Confidence 66789999999999999988 788889999999999874 34444 5689999999999877541 12223333 56
Q ss_pred eEEEEEcCCCcEEEEeec----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 284 LTVLAFHPTQRIVAAGDV----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..+++..-.++.+++|.. +-.|.+||++..+.. ...-...|.+.|+++
T Consensus 120 f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----------------------------l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 120 FICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----------------------------LRQLNESHNDDVTQL 171 (376)
T ss_pred ceEeeccCcCCeEEeccccccCceEEEEEEeccccch----------------------------hhhhhhhccCcceeE
Confidence 777777767788888743 678999999776531 113346799999999
Q ss_pred EEecC-CCEEEEEecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 360 IFSSD-GAYLYSGGKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 360 ~~s~~-g~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+|+|. .+.|++|+.||-|.++|++.... .....+...|.++.|..++ +.|.+-+..+...+|+++.+.....+.
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 99994 57899999999999999987644 3456677889999998877 568888899999999999887554443
Q ss_pred cCCCCCCC--CCcccCceeeEEEeCCCCEEEEeec-CceEEEEEc---CCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 434 GIKLPCPL--PEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSL---LDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 434 ~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
........ ....-..+.......+....+.++. -+...++-+ .++...........+| ..-|+++.|.
T Consensus 252 ~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~------~eiVR~i~~~ 325 (376)
T KOG1188|consen 252 NPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH------EEIVRDILFD 325 (376)
T ss_pred CccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc------HHHHHHHhhh
Confidence 32110000 0000011222222224445555544 444554433 3333333333332223 6678889999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
..+..+.+|+ +||.+.+|..+
T Consensus 326 ~~~~~l~TGG---------EDG~l~~Wk~~ 346 (376)
T KOG1188|consen 326 VKNDVLYTGG---------EDGLLQAWKVE 346 (376)
T ss_pred cccceeeccC---------CCceEEEEecC
Confidence 8999999998 99999999964
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-15 Score=135.39 Aligned_cols=270 Identities=13% Similarity=0.142 Sum_probs=193.9
Q ss_pred ceeEEEEecC----CCeEEEEecC--Ccceeee--ecCcccccCCceeecCC-----CEEEEEeCCEEEEEEccc--ceE
Q 040987 42 RSFIFAVARS----SGLCRTAEYP--AVNSKMI--RGGRSYVSSPPAFSNDV-----KRLLVCTSNTVSIFSTST--GLQ 106 (762)
Q Consensus 42 ~~~~~a~~~~----~g~i~~~~~~--~~~~~~~--~~h~~~v~~~~~~s~dg-----~~la~~~~~~i~iwd~~~--~~~ 106 (762)
....+|+|+- ++.|.+..+. +++.+.. ..|.-+++. +-|.||. ++||+.+ ..+++|.+.. ++.
T Consensus 58 ~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK-~~wiPd~~g~~pdlLATs~-D~LRlWri~~ee~~~ 135 (364)
T KOG0290|consen 58 KKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTK-LMWIPDSKGVYPDLLATSS-DFLRLWRIGDEESRV 135 (364)
T ss_pred cceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccc-eEecCCccccCcchhhccc-CeEEEEeccCcCCce
Confidence 4678888873 5666666554 3444433 589999997 9999987 3566654 5789999863 221
Q ss_pred --Eeee-----cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcc
Q 040987 107 --ISSL-----EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQ 179 (762)
Q Consensus 107 --~~~l-----~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (762)
...| ..+.+++++..|..-.. +++.++|-|-|..|||+++|.. ..
T Consensus 136 ~~~~~L~~~kns~~~aPlTSFDWne~dp------~~igtSSiDTTCTiWdie~~~~-~~--------------------- 187 (364)
T KOG0290|consen 136 ELQSVLNNNKNSEFCAPLTSFDWNEVDP------NLIGTSSIDTTCTIWDIETGVS-GT--------------------- 187 (364)
T ss_pred ehhhhhccCcccccCCcccccccccCCc------ceeEeecccCeEEEEEEeeccc-cc---------------------
Confidence 1112 35778999999998876 7889999999999999988621 00
Q ss_pred cCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-E-EEeCCe
Q 040987 180 SDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-G-IRKQRK 257 (762)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a-~~~~~~ 257 (762)
++..+..|.+.|..++|+.++..+ | +|.||.
T Consensus 188 -----------------------------------------------vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS 220 (364)
T KOG0290|consen 188 -----------------------------------------------VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS 220 (364)
T ss_pred -----------------------------------------------eeeEEEecCcceeEEEeccCccceEEEecCCCc
Confidence 014667799999999999977654 5 678999
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
+++||++..+-. .+.........+...++|++ |-+++|+-.. ...|.+.|++...
T Consensus 221 vRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~--------------------- 277 (364)
T KOG0290|consen 221 VRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC--------------------- 277 (364)
T ss_pred EEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC---------------------
Confidence 999999987754 22122222245778899988 4557776444 4579999986543
Q ss_pred CcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCC-CCC
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESP-DPS 407 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~-~~~ 407 (762)
.++..+++|...|+.++|.|. ...|++++.|.++.+||+.+.-. +.....++.|..+.|++ .+.
T Consensus 278 --------tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 278 --------TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred --------cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCC
Confidence 356789999999999999995 57899999999999999986433 22333567899999985 556
Q ss_pred eEEEEecCCcEEE
Q 040987 408 LSSISCADNQVHL 420 (762)
Q Consensus 408 ~l~~~~~d~~i~i 420 (762)
.++++ .++.+.+
T Consensus 350 wiai~-~~kklei 361 (364)
T KOG0290|consen 350 WIAIC-FGKKLEI 361 (364)
T ss_pred EEEEE-ecCeeeE
Confidence 77765 3444433
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-14 Score=139.58 Aligned_cols=380 Identities=13% Similarity=0.076 Sum_probs=248.8
Q ss_pred EEEecCCcceeeeec-CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceee
Q 040987 56 RTAEYPAVNSKMIRG-GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILS 134 (762)
Q Consensus 56 ~~~~~~~~~~~~~~~-h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~ 134 (762)
.+|+..+...-...+ -.-++.. +.+||.|++|++.....|.+|+-..+..+.++. | ..|..+.|||.+ +
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~-~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~-------k 84 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAY-VSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-H-PDVKYLDFSPNE-------K 84 (561)
T ss_pred EeecCccccccccccccCcchhh-eeecCcchheehhhccceEEccccchhheeeee-c-CCceecccCccc-------c
Confidence 567777666655555 4445665 999999999999998889999988776666665 4 459999999999 7
Q ss_pred eEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
||.|-+....+ +.+. .+ .--..++
T Consensus 85 YL~tw~~~pi~---~pe~-----e~------------------------------------------------sp~~~~n 108 (561)
T COG5354 85 YLVTWSREPII---EPEI-----EI------------------------------------------------SPFTSKN 108 (561)
T ss_pred eeeeeccCCcc---Chhh-----cc------------------------------------------------CCccccC
Confidence 99887765542 1000 00 0011334
Q ss_pred cEEEEecCCccccceeeeccCC-Cce-EEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC
Q 040987 215 RICKCNLTESRLAGGVTLAEMK-EPQ-VITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT 292 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~-~v~-~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 292 (762)
.+.+||..+|..+......... -.+ -+.|+-|.+++|--....+.|+++ +......+... -....|....|+|.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~---lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN---LRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh---ccccceeeEEecCC
Confidence 6667777777666333322222 123 678999999998556778999997 33322111111 12357888999996
Q ss_pred C--cEEEE-----eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 293 Q--RIVAA-----GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 293 ~--~~l~~-----~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
+ ..||+ .+.++.+++|.+..+..+.. ..+ ..-.=..+.|.+.|
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~t----------------------------k~l--fk~~~~qLkW~~~g 234 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVT----------------------------KNL--FKVSGVQLKWQVLG 234 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeee----------------------------eee--EeecccEEEEecCC
Confidence 4 34553 45678899999865543321 111 11122457788888
Q ss_pred CEEEEEe-----------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEE
Q 040987 366 AYLYSGG-----------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 366 ~~l~s~~-----------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~ 432 (762)
++|+.-- ....++++++............++|...+|.|.++.+++.+ .+..+.++|++.. +...+
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~ 313 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF 313 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc-eEEec
Confidence 7766421 12468888887544433336678999999999998877654 5778999999865 43333
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCcee-eEEeecccccCCCCcceeEEEEEEec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGIS-EVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.. ..=..+.|+|.++++++++-+ |.+.+||........ .+. .....-..|+|
T Consensus 314 Pe------------~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~------------~~n~s~~~wsp 369 (561)
T COG5354 314 PE------------QKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN------------GLNTSYCDWSP 369 (561)
T ss_pred CC------------cccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee------------cCCceEeeccC
Confidence 22 223568899999999998765 789999987654433 221 12245568999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
|++++.+...... ...|..+++||+.....- ..+.+.|.|.|++.-+.+.+.
T Consensus 370 d~qF~~~~~ts~k---~~~Dn~i~l~~v~g~~~f--------------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 370 DGQFYDTDTTSEK---LRVDNSIKLWDVYGAKVF--------------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred CceEEEecCCCcc---cccCcceEEEEecCchhh--------------hhhhccccCCcccceeeccCC
Confidence 9999887753211 226889999999865321 445688999888877766554
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-15 Score=154.59 Aligned_cols=232 Identities=12% Similarity=0.093 Sum_probs=157.9
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe----CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT----SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~----~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.. ++|||||+.||+.+ +..|.+||+.+|+... +....+.+..++|+|||+
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~~~~-p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~-- 255 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGS-- 255 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCceee-eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCC--
Confidence 689999988777777778888886 99999999999875 2589999998885332 222233355689999994
Q ss_pred cceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++ .|.+||+.+++..+.
T Consensus 256 ----~La~~~~~~g~~~I~~~d~~tg~~~~l------------------------------------------------- 282 (429)
T PRK03629 256 ----KLAFALSKTGSLNLYVMDLASGQIRQV------------------------------------------------- 282 (429)
T ss_pred ----EEEEEEcCCCCcEEEEEECCCCCEEEc-------------------------------------------------
Confidence 2333444444 477788876653221
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC--C--eEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ--R--KLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~--~--~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
..+...+....|+|||+.|+...+ + .|+++++.+++.. .+ ..+...
T Consensus 283 ------------------------t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-----~l-t~~~~~ 332 (429)
T PRK03629 283 ------------------------TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-----RI-TWEGSQ 332 (429)
T ss_pred ------------------------cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-----Ee-ecCCCC
Confidence 111223456799999999985432 3 4555577666532 22 233445
Q ss_pred eEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....|+|||++|+..+.+ ..|.+||+.+++.. .+... .......
T Consensus 333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-------------------------------~Lt~~-~~~~~p~ 380 (429)
T PRK03629 333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-------------------------------VLTDT-FLDETPS 380 (429)
T ss_pred ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-------------------------------EeCCC-CCCCCce
Confidence 6678999999999876543 35888898766422 11111 1234578
Q ss_pred EecCCCEEEEEecCCe---EEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKEGV---LVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~---i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.|+.++.++. +.+++++......+..+.+.+...+|+|
T Consensus 381 ~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 381 IAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred ECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCCCcCCcccCC
Confidence 9999999999887753 7888887666666777777888888887
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.8e-17 Score=150.84 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=146.8
Q ss_pred CceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 78 PPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 78 ~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
.++|+.||..||+++ ||.++||+..+...+.....|.+.|.+++||||| ++|++.+.| ..+||+.++|.++
T Consensus 149 ~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-------k~lasig~d-~~~VW~~~~g~~~ 220 (398)
T KOG0771|consen 149 VVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-------KFLASIGAD-SARVWSVNTGAAL 220 (398)
T ss_pred EEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-------cEEEEecCC-ceEEEEeccCchh
Confidence 399999999999999 8999999988888888888999999999999999 789999999 9999999999665
Q ss_pred EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC
Q 040987 157 KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK 236 (762)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (762)
....... ...
T Consensus 221 a~~t~~~----------------------------------------------------------------------k~~ 230 (398)
T KOG0771|consen 221 ARKTPFS----------------------------------------------------------------------KDE 230 (398)
T ss_pred hhcCCcc----------------------------------------------------------------------cch
Confidence 5443110 011
Q ss_pred CceEEEECCCC---CE-EEEE--eCCeEEEEEccCchhhhh-eeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 237 EPQVITISSSG---KY-FGIR--KQRKLLIWKVPDVEAERV-VMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 237 ~v~~~~~spdg---~~-la~~--~~~~i~iwd~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
....+.|+.|+ .+ +|+. ..+.|..|++........ +..+.. .....|.+++.++||+++|.|+.||.|.+++
T Consensus 231 ~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGsVai~~ 309 (398)
T KOG0771|consen 231 MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGSVAIYD 309 (398)
T ss_pred hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCcEEEEE
Confidence 12334454444 22 2222 234455554433221000 111112 2335799999999999999999999999999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
..+.+.+. ..-+.|...|+.+.|+||.+++++.+.+.+..+..+.-
T Consensus 310 ~~~lq~~~-----------------------------~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 310 AKSLQRLQ-----------------------------YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eceeeeeE-----------------------------eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 87766543 44567999999999999999999999998888887664
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=156.37 Aligned_cols=232 Identities=13% Similarity=0.111 Sum_probs=161.2
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.++|........+..|...+.+ ++|||||+.||+.+. ..|.+||+.+++. ..+..+.+.+.+.+|+|||+
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~-p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLT-PRFSPNRQEITYMSYANGRPRVYLLDLETGQR-ELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEe-eEECCCCCEEEEEEecCCCCEEEEEECCCCcE-EEeecCCCcccCcEECCCCC-
Confidence 3788999988888888889889997 999999999999862 6899999988865 34556677788999999995
Q ss_pred ccceeeeEEeeecCCe--EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDGT--IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~--i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++. |.+||+.+++..+ +
T Consensus 259 -----~la~~~~~~g~~~Iy~~d~~~~~~~~-L----------------------------------------------- 285 (435)
T PRK05137 259 -----KVVMSLSQGGNTDIYTMDLRSGTTTR-L----------------------------------------------- 285 (435)
T ss_pred -----EEEEEEecCCCceEEEEECCCCceEE-c-----------------------------------------------
Confidence 34456666654 6666776654321 1
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
..+........|+|||+.|+...+ ..|+++|+.+++.. .+. .+..
T Consensus 286 -------------------------t~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-----~lt-~~~~ 334 (435)
T PRK05137 286 -------------------------TDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-----RIS-FGGG 334 (435)
T ss_pred -------------------------cCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-----Eee-cCCC
Confidence 112223445799999999985532 36888898776542 222 3345
Q ss_pred CeEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.+....|+|||++|+....+ ..|.+|++.++.. ..+. ....+..+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-------------------------------~~lt-~~~~~~~p 382 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-------------------------------RILT-SGFLVEGP 382 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-------------------------------Eecc-CCCCCCCC
Confidence 56778999999999876543 3578888754421 1111 11235678
Q ss_pred EEecCCCEEEEEecC------CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 360 IFSSDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
.|+|||+.|+..+.+ ..++++|+..+....+. ....+...+|+|
T Consensus 383 ~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 383 TWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP-TPGDASDPAWSP 432 (435)
T ss_pred eECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc-CCCCccCcccCC
Confidence 999999998876543 36888898877665444 344566777776
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5e-14 Score=137.50 Aligned_cols=353 Identities=13% Similarity=0.220 Sum_probs=228.3
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeecc---CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHH---TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLN 326 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~ 326 (762)
+++-+...+.+|........ .....+ ....+..++|++|+++|.+ .+..++|++......
T Consensus 5 ~aVRsSe~~~l~~~~~~~~~-----~~~f~~~~~~~~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~----------- 67 (566)
T KOG2315|consen 5 YAVRSSEGFYLFNGPGSKDA-----VTVFEQNKTSRPCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKV----------- 67 (566)
T ss_pred EEEEccceeEEeccCCcccc-----ccccccCCCCCcceeEEEcCCCcEEEEE-cCCeEEEEEccCCcE-----------
Confidence 44555667888887664332 111112 3347788999999988876 466799999866531
Q ss_pred ccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-----c-----CCeEEEEecCCCceeccC--CCC
Q 040987 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-----K-----EGVLVVWQLDTGKKKFLP--RIG 394 (762)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----~-----dg~i~~wd~~~~~~~~~~--~~~ 394 (762)
.+......++++.|+|-|.+|.+-- . ...+.+|+++++...... ...
T Consensus 68 ---------------------~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q 126 (566)
T KOG2315|consen 68 ---------------------VLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQ 126 (566)
T ss_pred ---------------------EEEeccceeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhh
Confidence 1111222678999999999887521 1 245789999996554322 222
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE-EEEEccCCCCCCCCCcccCceeeEEEeCCCC--EEEE-----eec
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI-IRSISGIKLPCPLPEEYKGLCRDIAFNHDGG--LVAL-----RAE 466 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~-----~~~ 466 (762)
.. .++.|++|..+.+- -..+.+++|+..+.+. ...+. ...+..+.+||.+. .+|+ .+.
T Consensus 127 ~~-W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~~~kl~------------~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 127 NG-WVPQFSIDESLAAR-LVSNEVQFYDLGSFKTIQHKLS------------VSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred cC-cccccccchhhhhh-hhcceEEEEecCCccceeeeee------------ccceeeEEecCCCCCceEEEEccCCCCC
Confidence 22 68889988765443 2567899999987332 22232 25778889998743 3443 234
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE-EEEeeeccc--cCCCceeEEEEEEecCCCcee
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM-STVDIKLAE--EGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~~~~~--~~~~~d~~i~iwd~~~~~~~~ 543 (762)
-..+++|.......-..+ . .+.+ ....-..+.|++-|.-| +.++.+.+. .++.++.++++.++++.....
T Consensus 193 Pa~vri~~~~~~~~~~~~-a-~ksF-----Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V 265 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPV-A-NKSF-----FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSV 265 (566)
T ss_pred CcEEEEeccccccccchh-h-hccc-----cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEE
Confidence 468999987632211111 0 0000 02233457788877633 333322222 244567889999998555554
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEE--EeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVS--SSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 621 (762)
.+. . .++|.++.|+|+++-+++ |-.--.+.|||++..- +. ....++-+++-|+|.|+
T Consensus 266 ~L~------k-~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~-v~-------------df~egpRN~~~fnp~g~ 324 (566)
T KOG2315|consen 266 PLL------K-EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP-VF-------------DFPEGPRNTAFFNPHGN 324 (566)
T ss_pred ecC------C-CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE-eE-------------eCCCCCccceEECCCCC
Confidence 442 2 789999999999986554 4556789999987432 22 23467778999999999
Q ss_pred EEEEEc----CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc------CCCCeEEEEECCCCceee
Q 040987 622 VLAVAA----ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW------GSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 622 ~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~------d~~~~v~vwd~~~~~~~~ 687 (762)
+|+.++ -|.+.|||+.+.+++..+.... -+-+.|+|||++++|+.. |+. ++||+.. |+++.
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg--~Kiwhyt-G~~l~ 395 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNG--IKIWHYT-GSLLH 395 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCC--eEEEEec-Cceee
Confidence 998875 4899999999999998886543 455789999999999975 444 8999864 44443
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-14 Score=141.94 Aligned_cols=561 Identities=14% Similarity=0.128 Sum_probs=311.5
Q ss_pred eeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeecC-----------CCE-EEEEe-CCEEEEEEcccceEEe
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSND-----------VKR-LLVCT-SNTVSIFSTSTGLQIS 108 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~d-----------g~~-la~~~-~~~i~iwd~~~~~~~~ 108 (762)
+-++|.|+. ..|.+.|.-+.+.+ .+.-|...|+. +.|+|- .++ ||++. .|.|.|||...+..+.
T Consensus 26 ~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~-VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~ 103 (1062)
T KOG1912|consen 26 SGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTS-VRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN 103 (1062)
T ss_pred cceEEEecC-ceEEEEehhhhhhhhccccCccceeE-EEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh
Confidence 558888763 44567777765554 45778888887 998762 233 44444 4999999999999999
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceE-EEeecccccCCcccCCCCCce
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIF-SMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ 187 (762)
.++.|..+|..+.|-+.....+ .+|+.-....+|.+|+..+|++.........+. ++.+ |...+..
T Consensus 104 ~l~~~~~~~qdl~W~~~rd~Sr---d~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~----------DPfd~rh 170 (1062)
T KOG1912|consen 104 WLSHSNDSVQDLCWVPARDDSR---DVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRV----------DPFDSRH 170 (1062)
T ss_pred hhcCCCcchhheeeeeccCcch---heeEEecCCcEEEEEEccCCceeeccccCCcceeeeee----------CCCCcce
Confidence 9999999999999987543111 234455556899999999999988776655433 3433 2222223
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc-----ceee--eccCC---------CceEEEECCCCCEEE
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA-----GGVT--LAEMK---------EPQVITISSSGKYFG 251 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~-----~~~~--~~~~~---------~v~~~~~spdg~~la 251 (762)
+.+....+...... +....-.++..+.+.+.+...- +... ..++. ....++|+|.-+.+.
T Consensus 171 ~~~l~s~g~vl~~~----~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~l 246 (1062)
T KOG1912|consen 171 FCVLGSKGFVLSCK----DLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNIL 246 (1062)
T ss_pred EEEEccCceEEEEe----ccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceE
Confidence 44443222211111 0011112222222222221000 0000 00010 113467788766554
Q ss_pred -EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc--EEEEeecCCeEEEEeccCCce-eecccccccccc
Q 040987 252 -IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR--IVAAGDVTGRILIWRGFGDRT-FATNDNKMNLNL 327 (762)
Q Consensus 252 -~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~ 327 (762)
......+.++|++-..+. ....-..+.+.-+.+-|+++ .|++.-.||.+.+|-.+.... ++......
T Consensus 247 fi~~prellv~dle~~~~l-----~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l---- 317 (1062)
T KOG1912|consen 247 FITFPRELLVFDLEYECCL-----AVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASL---- 317 (1062)
T ss_pred EEEeccceEEEcchhhcee-----EEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhh----
Confidence 667889999999877665 44445566677788888665 788889999999997644211 11000000
Q ss_pred cccccCCCCcccCCccccceeeecc-ccceeEEEEecC-CCEEEEEecCCeEEEEecCCCceecc---------------
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWH-PSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFL--------------- 390 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~--------------- 390 (762)
. .+-++.+..+... +-.+......|. ...++..-.+|.+.+|.+.+++....
T Consensus 318 --------~---~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~ 386 (1062)
T KOG1912|consen 318 --------S---MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFN 386 (1062)
T ss_pred --------c---cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccccc
Confidence 0 0001111111110 111111222232 22333333455666676664432000
Q ss_pred -----------------CCCCCCeEEEEe-----------CCCC-------CeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 391 -----------------PRIGSPLLYFTE-----------SPDP-------SLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 391 -----------------~~~~~~v~~~~~-----------s~~~-------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.+|.....+... .|.+ .+++.|+..|+|.++|+.++.....+..|
T Consensus 387 ~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fsvh 466 (1062)
T KOG1912|consen 387 LSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFSVH 466 (1062)
T ss_pred CceeehhhccccchhhcCCCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhccc
Confidence 011112222111 1222 35788999999999999999998888888
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEee---------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRA---------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
. +.|.++.|....+++-.+. ..+.+.+-|+++|.... +....+. ...+|+.+..
T Consensus 467 t----------~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~-fR~l~~~------despI~~irv 529 (1062)
T KOG1912|consen 467 T----------SLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKR-FRGLQKP------DESPIRAIRV 529 (1062)
T ss_pred c----------cceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccc-cccCCCC------CcCcceeeee
Confidence 7 7888998887766554432 23567888998875432 1111111 1678999999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-------Eee--cCCC-----------------------
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-------IVY--EPHR----------------------- 554 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~--~~h~----------------------- 554 (762)
|.-|+|++..- .+.-+.+||+++......... ..+ ..|+
T Consensus 530 S~~~~yLai~F---------r~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~ 600 (1062)
T KOG1912|consen 530 SSSGRYLAILF---------RREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSV 600 (1062)
T ss_pred cccCceEEEEe---------cccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccc
Confidence 99999999998 677888888865433211100 000 0000
Q ss_pred CCceE---------------------------EEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 555 DAGIS---------------------------AVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 555 ~~~v~---------------------------~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...+. .++| .+..++.|..+|.+.+||+.......... ...+
T Consensus 601 es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg~~d---------~p~~ 669 (1062)
T KOG1912|consen 601 ESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRGVRD---------SPDP 669 (1062)
T ss_pred cchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccCccC---------CCCc
Confidence 00011 1112 14478999999999999986543333211 1112
Q ss_pred CCCeEEEEEcC-CCcEEEEEcCCeEEEEeCCCCeEEEEeccccCc--eeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 608 KKAMTAAAFSA-DGSVLAVAAETVITLWDPDRNVLVAVIGETLTP--IMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 608 ~~~i~~~~~s~-dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~--v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
........+-| |++.++.-.| -+-+||.+....+..+.|-... +..+.|......++. .|.+ +++-.+....
T Consensus 670 ra~~l~~~~ipG~~~~lvl~~d-~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l~--~d~~--~Rf~~m~mks 744 (1062)
T KOG1912|consen 670 RAHSLTFPQIPGDHTTLVLELD-WLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVLP--NDNK--ERFRVMPMKS 744 (1062)
T ss_pred hhhheecccCCCCceEEEEecC-cceecccccceeeeeeccCCcceEEEEEEecccCceecC--CCCc--eeEEeccccC
Confidence 22222333334 4444443334 4789999988888888655444 444555444333333 3335 6655554433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-15 Score=154.75 Aligned_cols=236 Identities=12% Similarity=-0.005 Sum_probs=161.4
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
..|.++|.+......+......+...+|||||+.|+..+. +..+++|++.+++..... ... +....
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~----------~~~~~ 247 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFP----------RHNGA 247 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCC----------CCcCC
Confidence 4799999988777666667778999999999999987643 347999999887643322 211 33456
Q ss_pred EEEeCCCCEEEEee-cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce
Q 040987 452 IAFNHDGGLVALRA-ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 452 ~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d 528 (762)
+.|+|||+.|+... .+| .|++||+.+++.. .+... ...+....|+|||+.|+..+.+ + +.
T Consensus 248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~----------~~~~~~~~wSPDG~~I~f~s~~----~--g~ 310 (429)
T PRK03629 248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDG----------RSNNTEPTWFPDSQNLAYTSDQ----A--GR 310 (429)
T ss_pred eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCC----------CCCcCceEECCCCCEEEEEeCC----C--CC
Confidence 89999999888753 344 5899999876532 22111 2346788999999999887621 0 11
Q ss_pred eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCCceeeeeecc
Q 040987 529 VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 529 ~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
..|.++|+.++.. ..+. .+ ........|+|||++|+..+.+ ..|.+||+.++.......
T Consensus 311 ~~Iy~~d~~~g~~-~~lt-----~~-~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~----------- 372 (429)
T PRK03629 311 PQVYKVNINGGAP-QRIT-----WE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTD----------- 372 (429)
T ss_pred ceEEEEECCCCCe-EEee-----cC-CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCC-----------
Confidence 2555556665543 2221 12 3345678999999999887654 358889998775432211
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CC---eEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ET---VITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~---~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||++|+.++ ++ .+.+++++ |+....+.+|.+.+...+|+|
T Consensus 373 --~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 373 --TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECccCCCCcCCcccCC
Confidence 11234678999999998886 53 47788885 555667777888899999998
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.5e-14 Score=131.54 Aligned_cols=317 Identities=15% Similarity=0.125 Sum_probs=191.8
Q ss_pred CCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-CcEEEEeecCCeEEEEeccC
Q 040987 235 MKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~ 312 (762)
...+..++|++.-.-+| ++.|..|++|+-...... .........|+|++|-|. ++.|+.|+..| |.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt-----~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPT-----KLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCc-----eecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCc
Confidence 44678889998444444 458999999998874332 334445678999999995 45777777655 99998643
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~ 391 (762)
........ .........+..-.+| ..|+++.|.+||..+++++. |..|.+||.+++..+.+.
T Consensus 172 tln~~r~~----------------~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 172 TLNANRNI----------------RMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred cccccccc----------------ccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 21111000 0000011122233445 68999999999999999885 478999999999988766
Q ss_pred -CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 392 -RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 392 -~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
...+.+.-+.|||||.+|++++-|+..++|+....-......... +.|...+|+|+|++|+..... .-
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs----------grvqtacWspcGsfLLf~~sg-sp 303 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS----------GRVQTACWSPCGSFLLFACSG-SP 303 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC----------CceeeeeecCCCCEEEEEEcC-Cc
Confidence 455678899999999999999999999999655422222221112 688999999999988776432 23
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE-EEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS-TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
++|.+. |......+. .++ .....-+-|+..-..... +
T Consensus 304 ~lysl~-----------------------------f~~~~~~~~~~~~---------~k~~lliaDL~e~ti~ag-~--- 341 (445)
T KOG2139|consen 304 RLYSLT-----------------------------FDGEDSVFLRPQS---------IKRVLLIADLQEVTICAG-Q--- 341 (445)
T ss_pred eEEEEe-----------------------------ecCCCccccCccc---------ceeeeeeccchhhhhhcC-c---
Confidence 344432 221111100 111 112222333321110000 0
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCC--------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC---
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGG--------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA--- 618 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--- 618 (762)
.-- .+.+.+++|.|.|.+||+.-..+ .|.+||........... |-.. .......+.|+|
T Consensus 342 -~l~-cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~-----cg~i---~ge~P~~IsF~pl~n 411 (445)
T KOG2139|consen 342 -RLC-CGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSY-----CGMI---GGEYPAYISFGPLKN 411 (445)
T ss_pred -ccc-cCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEe-----cccc---cCCCCceEEeeeccc
Confidence 001 45778999999999999876443 35567665433322210 1111 122244566665
Q ss_pred CCcEEEEE-cCCeEEEEeCC
Q 040987 619 DGSVLAVA-AETVITLWDPD 637 (762)
Q Consensus 619 dg~~la~~-~d~~i~iwd~~ 637 (762)
+|.+|.++ +-|.+.-|++.
T Consensus 412 ~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 412 EGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCcEEEEEeccCceEeeeeE
Confidence 56777776 37777777654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-15 Score=155.07 Aligned_cols=233 Identities=18% Similarity=0.157 Sum_probs=159.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.+||........+..|...+.+ ++|||||+.||+.+ + ..|.+||+.+++.. .+..+.+...+++|+|||+
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~-p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILS-PAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECCCCCCceEeecCCCcccc-ccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCC-
Confidence 4688999988777888888888887 99999999999987 2 47999999887653 3444455566889999995
Q ss_pred ccceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++ .|.+||+.+++... +.
T Consensus 261 -----~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt---------------------------------------------- 288 (433)
T PRK04922 261 -----RLALTLSRDGNPEIYVMDLGSRQLTR-LT---------------------------------------------- 288 (433)
T ss_pred -----EEEEEEeCCCCceEEEEECCCCCeEE-Cc----------------------------------------------
Confidence 3444555555 58888887765322 11
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CC--eEEEEEccCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QR--KLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~--~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
.+......++|+|||+.|+... ++ .|+++++.+++.. .+. .+..
T Consensus 289 --------------------------~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-----~lt-~~g~ 336 (433)
T PRK04922 289 --------------------------NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-----RLT-FQGN 336 (433)
T ss_pred --------------------------cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----Eee-cCCC
Confidence 1122234578999999998553 23 4777777766542 222 2333
Q ss_pred CeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
....++|+|||++++..+.++ .|.+||+.+++.. .+. +.......
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-------------------------------~Lt-~~~~~~~p 384 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-------------------------------TLT-PGSLDESP 384 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-------------------------------ECC-CCCCCCCc
Confidence 455789999999998765433 6899998665422 111 11123457
Q ss_pred EEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 360 IFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
.|+|||+.++..+.+ +.|.++++..+....+....+.+...+|+|
T Consensus 385 ~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 385 SFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 899999998877653 468888987665555555556677777776
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=145.50 Aligned_cols=231 Identities=15% Similarity=0.250 Sum_probs=164.9
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEEeecCCeE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAAGDVTGRI 305 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~~~~dg~v 305 (762)
..+.+|.+.|+++.|+.||.+|++| +|..+.|||.-..+ ....+..+|.+.|.++.|-| +.+.+++|..|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----eeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 5678999999999999999999977 67889999998655 45677889999999999999 56689999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~ 384 (762)
+++|+...+.-.... .-.+....+..|...|..++..|++ +.+.+++.||+|+-+|++.
T Consensus 120 ~lfdl~~~~~~~~d~--------------------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDH--------------------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEeccccccccccc--------------------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 999986532111000 0113346677899999999999998 7889999999999999986
Q ss_pred Ccee-----------ccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCc--------e----------EEEEEc-
Q 040987 385 GKKK-----------FLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSM--------E----------IIRSIS- 433 (762)
Q Consensus 385 ~~~~-----------~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~--------~----------~~~~~~- 433 (762)
...- .....--...++.++|. ..+|++|+.+-..++||.+.. . +++.+.
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 3320 01111135678889985 467899999999999994321 0 111111
Q ss_pred cCC-CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 434 GIK-LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 434 ~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
+|. .+.......-.-++-++|+|+|.-|++.-....|+++|+..++....
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 111 00000000011246688999999888877777899999987765443
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-17 Score=163.44 Aligned_cols=288 Identities=11% Similarity=0.113 Sum_probs=220.8
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+.++.+.+|...|+|+.|...|.++++|+.|..++||..+++.+. ...+|.+.++.++.+.+..++++++.|..|++|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 345678899999999999999999999999999999999998875 5788999999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+..+.++..+.+|. +.|++++|+|-. +.+.||++++||.+-.. .....+...+. ...-+.
T Consensus 261 l~~~~pvsvLrght----------gavtaiafsP~~----sss~dgt~~~wd~r~~~----~~y~prp~~~~--~~~~~~ 320 (1113)
T KOG0644|consen 261 LPDGAPVSVLRGHT----------GAVTAIAFSPRA----SSSDDGTCRIWDARLEP----RIYVPRPLKFT--EKDLVD 320 (1113)
T ss_pred cCCCchHHHHhccc----------cceeeeccCccc----cCCCCCceEeccccccc----cccCCCCCCcc--ccccee
Confidence 99999999999998 899999999964 67899999999987211 11111111111 134567
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKV 581 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~i 581 (762)
.+.|...+..+++++ .++.-..|....... + ...+.-+.++.|- .+.+++-.+-.+.+
T Consensus 321 s~~~~~~~~~f~Tgs---------~d~ea~n~e~~~l~~-----------~-~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 321 SILFENNGDRFLTGS---------RDGEARNHEFEQLAW-----------R-SNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred eeecccccccccccc---------CCcccccchhhHhhh-----------h-ccceEEEeccccccccceeeeeeeEeee
Confidence 778888888889988 677777776553221 1 2222222233222 45666667788999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA-VAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
|++.++...... .+|...+..+.++|-...++ +++ ||...|||+-.|.+++...-..+.+..-.||+
T Consensus 380 wnl~~g~l~H~l-----------~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSq 448 (1113)
T KOG0644|consen 380 WNLYTGQLLHNL-----------MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQ 448 (1113)
T ss_pred eecccchhhhhh-----------cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCC
Confidence 999999877665 36889999999999776665 445 99999999999977765543345677889999
Q ss_pred CCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 660 SSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 660 dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
||..++....-|. ++|.....++.
T Consensus 449 dgts~~lsd~hgq--l~i~g~gqs~s 472 (1113)
T KOG0644|consen 449 DGTSIALSDDHGQ--LYILGTGQSKS 472 (1113)
T ss_pred CCceEecCCCCCc--eEEeccCCCcc
Confidence 9999988866665 88887665543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-13 Score=133.74 Aligned_cols=299 Identities=19% Similarity=0.226 Sum_probs=187.9
Q ss_pred EEEEecC----CeEEEEec--CCCceec--cCCCCCCeEEEEeCCCCCeEEEEec----CCcEEEEEcCCc--eE--EEE
Q 040987 368 LYSGGKE----GVLVVWQL--DTGKKKF--LPRIGSPLLYFTESPDPSLSSISCA----DNQVHLLKMPSM--EI--IRS 431 (762)
Q Consensus 368 l~s~~~d----g~i~~wd~--~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~i~d~~~~--~~--~~~ 431 (762)
++.|+.. +.|++|++ ++++... ..........++++|++++|++... .+.|..|++... ++ +..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 3444444 67888877 4555432 2224455677899999999999877 468888887763 32 222
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeec----ccccCCCCcceeEEEEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCE----RNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~ 506 (762)
..... .....++++|++++|+++. .+|.+.++++.....+....... .+..+.........++.|
T Consensus 82 ~~~~g----------~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 82 VPSGG----------SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEESS----------SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE
T ss_pred eccCC----------CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE
Confidence 22111 3557899999999998886 58999999998754443332111 011111112455789999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICN 585 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~ 585 (762)
+|||+++++.+. +...|.+|++...............+. ...-+.++|+|++++++... .+++|.++++.
T Consensus 152 ~pdg~~v~v~dl--------G~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 152 SPDGRFVYVPDL--------GADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp -TTSSEEEEEET--------TTTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred CCCCCEEEEEec--------CCCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 999999998874 456899999987763221111111233 56778999999999887665 46789999988
Q ss_pred --cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCC--CC--eEEEEeccccCceeEEEE
Q 040987 586 --DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPD--RN--VLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 586 --~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~--~~--~~~~~l~~~~~~v~~~~~ 657 (762)
++...... .................++++|||++|.++. ++.|.+|+++ ++ +.+..+......-+.+++
T Consensus 223 ~~~g~~~~~~---~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 223 PSDGSLTEIQ---TISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTTTEEEEEE---EEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ccCCceeEEE---EeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 33221111 0001101111123678999999999999886 7899999993 34 334444333334789999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEEC--CCCceeeEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWNM--SKLSISWSY 689 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd~--~~~~~~~~~ 689 (762)
+|||++|+++..+. +.|.+|++ ++|.+...-
T Consensus 300 s~~g~~l~Va~~~s-~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 300 SPDGRYLYVANQDS-NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp -TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCC-CeEEEEEEeCCCCcEEEec
Confidence 99999999998766 35998876 567665543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-16 Score=148.19 Aligned_cols=315 Identities=15% Similarity=0.130 Sum_probs=227.7
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+..|.+.|+.+.|...|..|++|+.|..|.+||....+.. ..-..+|.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-----------------------------l~f~SGH~ 185 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-----------------------------LSFESGHC 185 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc-----------------------------cccccccc
Confidence 3566789999999999999999999999999999998665432 23446788
Q ss_pred cceeEEEEecC--CCEEEEEecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~ 426 (762)
..|....|-|. .+.+++++.||++++=.+..... ..+..|.+++..++.-|+. .-|++++.|+.+.-+|++.+
T Consensus 186 ~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~ 265 (559)
T KOG1334|consen 186 NNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQD 265 (559)
T ss_pred cchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccC
Confidence 88888888773 46799999999999877654332 3577889999999998876 45778889999999999887
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceee---EEeecccccCCCCcceeEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISE---VQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~v~ 502 (762)
.+...+....... ...-....++..|... .+++++.|..+++||.+.-..-.. +......|.. .+....|+
T Consensus 266 ~pa~~~~cr~~~~----~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~-~d~~v~IT 340 (559)
T KOG1334|consen 266 VPAEKFVCREADE----KERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV-EDDPVNIT 340 (559)
T ss_pred CccceeeeeccCC----ccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc-ccCcccce
Confidence 6655554222111 0012567888888654 799999999999999865332110 1111111111 13356799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc--------eeEEEEEeecCCCC-CceEEEE-EcCCCCeEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK--------EFTLSTIVYEPHRD-AGISAVA-FHPNRRAAVS 572 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~h~~-~~v~~~~-~spd~~~l~~ 572 (762)
+++|+.++.-|.++- .|-.|+++.-.-+.. .......+++||+. ..|..+- |-|...++++
T Consensus 341 gl~Ysh~~sElLaSY---------nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS 411 (559)
T KOG1334|consen 341 GLVYSHDGSELLASY---------NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS 411 (559)
T ss_pred eEEecCCccceeeee---------cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe
Confidence 999997776665555 677888885443222 11222334678842 2355664 5678899999
Q ss_pred EeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEE
Q 040987 573 SSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLV 642 (762)
Q Consensus 573 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~ 642 (762)
|+.=|.|.||+-.+++.+..++ +...-|+|+.=+|--..||+.+ |..|+||...+.+..
T Consensus 412 GSDCGhIFiW~K~t~eii~~Me-----------gDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~ 471 (559)
T KOG1334|consen 412 GSDCGHIFIWDKKTGEIIRFME-----------GDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTAERA 471 (559)
T ss_pred cCccceEEEEecchhHHHHHhh-----------cccceEeccCCCCCCchhhccCCccceeeecCCccccc
Confidence 9999999999999999888774 3445889999999999999999 999999988655433
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-16 Score=151.42 Aligned_cols=267 Identities=12% Similarity=0.155 Sum_probs=215.2
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
-..+.+.++.+|++++.++..|.|..+|..+++..........|..+.|-.+.+++|++ ....++|||-. |..++.+.
T Consensus 130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehh
Confidence 34577899999999999999999999999999998888888889999999988888887 78899999976 77777777
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.+ ..|..+.|.|-.-+|++++..|.+..-|+.+|+.+..+... .+.+..+.-+|-+-.+
T Consensus 208 ~~-----------~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~----------~G~~~vm~qNP~NaVi 266 (545)
T KOG1272|consen 208 RH-----------IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTG----------AGRTDVMKQNPYNAVI 266 (545)
T ss_pred hc-----------CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHcc----------CCccchhhcCCccceE
Confidence 65 47889999999889999999999999999999988877553 5567788888988888
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
-+|. ..|+|.+|.....+.+..+ ..| .+.|.++++.++|+|+|+.+.|..++|||++........
T Consensus 267 h~Gh---------snGtVSlWSP~skePLvKi-----LcH-~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 267 HLGH---------SNGTVSLWSPNSKEPLVKI-----LCH-RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred EEcC---------CCceEEecCCCCcchHHHH-----Hhc-CCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 8888 8899999999998887666 458 999999999999999999999999999999987755444
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe-CCCCe--EEEEeccc--cCceeEEEEeCCCCEEEEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD-PDRNV--LVAVIGET--LTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd-~~~~~--~~~~l~~~--~~~v~~~~~s~dg~~l~s~~ 668 (762)
. .......++||.-| +||.+-...|.||. .-.+. .-...-.| .++|.++.|.|-...|-.+-
T Consensus 332 ~------------tp~~a~~ls~Sqkg-lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH 398 (545)
T KOG1272|consen 332 R------------TPHPASNLSLSQKG-LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGH 398 (545)
T ss_pred e------------cCCCcccccccccc-ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccc
Confidence 1 13456678887655 66666667899994 33221 11111112 34699999999777777766
Q ss_pred cCC
Q 040987 669 WGS 671 (762)
Q Consensus 669 ~d~ 671 (762)
..|
T Consensus 399 ~~G 401 (545)
T KOG1272|consen 399 AGG 401 (545)
T ss_pred cCC
Confidence 655
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-15 Score=144.92 Aligned_cols=205 Identities=12% Similarity=0.132 Sum_probs=148.2
Q ss_pred eCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 455 NHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 455 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.|.+--++++-.-|.+++.|....+ +..+....+.. ....++++.|-|.+..++.... .++.+++|
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~-~sklfne~r~i-----~ktsvT~ikWvpg~~~~Fl~a~--------~sGnlyly 247 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFE-VSKLFNEERLI-----NKSSVTCIKWVPGSDSLFLVAH--------ASGNLYLY 247 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhH-HHHhhhhcccc-----cccceEEEEEEeCCCceEEEEE--------ecCceEEe
Confidence 3456678888888999999887632 22211111111 0567999999996654444432 67888888
Q ss_pred EecCCCc-----------eeEEEEE------------eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 535 VSGTQNK-----------EFTLSTI------------VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 535 d~~~~~~-----------~~~~~~~------------~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
|..-... ...+... .+.-- .+.|+..+|+|||++||+.+.||.+||||..+.+++.
T Consensus 248 ~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg 326 (636)
T KOG2394|consen 248 DKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG 326 (636)
T ss_pred eccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-cccccceeEcCCCceEEEEecCceEEEeeccHHHHHH
Confidence 6532100 0000000 00111 4578999999999999999999999999999888776
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC-----------
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG----------- 659 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~----------- 659 (762)
..+ ..-+...|++|||||+||++|+ |.-|.||.+..++.++.-++|.+.|..++|.|
T Consensus 327 ~mk-----------SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~ 395 (636)
T KOG2394|consen 327 VMK-----------SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNF 395 (636)
T ss_pred HHH-----------hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeeccccccccccccc
Confidence 653 2347889999999999999999 99999999999999999999999999999982
Q ss_pred ------------------------CC-------------CEEEEEEcCCCCeEEEEECCCCceee
Q 040987 660 ------------------------SS-------------EYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 660 ------------------------dg-------------~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
++ -++.+.+.|.. +++||+....+..
T Consensus 396 ~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTq--lcLWDlteD~L~~ 458 (636)
T KOG2394|consen 396 SGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQ--LCLWDLTEDVLVP 458 (636)
T ss_pred ccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccce--EEEEecchhhccc
Confidence 01 25777888887 9999998765544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-14 Score=151.48 Aligned_cols=216 Identities=13% Similarity=0.058 Sum_probs=153.4
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.++|.+..... .+..+...+...+|+|||+.|+.. .+..|.+||+.+++.. ....+.+.+.+.+
T Consensus 181 ~~~l~~~d~dg~~~~--~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~------~l~~~~g~~~~~~ 252 (435)
T PRK05137 181 IKRLAIMDQDGANVR--YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE------LVGNFPGMTFAPR 252 (435)
T ss_pred ceEEEEECCCCCCcE--EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE------EeecCCCcccCcE
Confidence 458889998655443 556677889999999999999854 2468999999887642 3345566778899
Q ss_pred EcCCCcEEEE-eecCCe--EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTGR--ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg~--v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.++. |++||+.+++. ..+..+........|+|||
T Consensus 253 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-------------------------------~~Lt~~~~~~~~~~~spDG 301 (435)
T PRK05137 253 FSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-------------------------------TRLTDSPAIDTSPSYSPDG 301 (435)
T ss_pred ECCCCCEEEEEEecCCCceEEEEECCCCce-------------------------------EEccCCCCccCceeEcCCC
Confidence 9999998764 445554 77778765532 2344455556678999999
Q ss_pred CEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+.|+..+.. ..|+++|+.+++...+......+....|+|||+.|+....+ ..|.+||+.++.. +.+.. .
T Consensus 302 ~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~--- 376 (435)
T PRK05137 302 SQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-G--- 376 (435)
T ss_pred CEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-C---
Confidence 998877642 36889999887776655555566778999999999887653 3588888765443 33322 1
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDR 479 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~ 479 (762)
..+..+.|+|||+.|+..+.+ ..++++|+..+.
T Consensus 377 -------~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 377 -------FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred -------CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 235678999999998876543 357888886543
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-14 Score=129.88 Aligned_cols=257 Identities=14% Similarity=0.202 Sum_probs=186.6
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
...+|+|.+|++|+..++++.....+.||.....+ ..++++.|. ..|+.+.|+|..+.|++++.|..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd----------~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHD----------KIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhC----------cceeEEeecCCCCceeEccCCCC
Confidence 45789999999999999999999999999987654 566677665 78899999999999999999999
Q ss_pred EEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 470 IHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 470 i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
-++|....+. -..++..... ....+++.|+|.++.+|+++ +-..|.||-++....-.. ...
T Consensus 79 ayVw~~~~~~~WkptlvLlRi--------NrAAt~V~WsP~enkFAVgS---------gar~isVcy~E~ENdWWV-sKh 140 (361)
T KOG1523|consen 79 AYVWTQPSGGTWKPTLVLLRI--------NRAATCVKWSPKENKFAVGS---------GARLISVCYYEQENDWWV-SKH 140 (361)
T ss_pred ccccccCCCCeeccceeEEEe--------ccceeeEeecCcCceEEecc---------CccEEEEEEEecccceeh-hhh
Confidence 9999984433 2222222211 66799999999999999999 778888888876544321 112
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee-------ecccCCCCeEEEEEcCCCc
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA-------VGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~s~dg~ 621 (762)
+-.++ ...|+++.|+|++-+|+.|+.|+..+|+..--...........|.... ......+.+..+.|+|+|.
T Consensus 141 ikkPi-rStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPI-RSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hCCcc-ccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 23456 788999999999999999999999999875322211111111222111 1114568999999999999
Q ss_pred EEEEEc-CCeEEEEeCCCCe-EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 622 VLAVAA-ETVITLWDPDRNV-LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 622 ~la~~~-d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.|+-.+ |..+.+-|..... .+..+....-+..++.|-.+. .++.++.|..-.+...+
T Consensus 220 ~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~-~vv~ag~~c~P~lf~~~ 278 (361)
T KOG1523|consen 220 RLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN-SVVAAGYDCGPVLFVTD 278 (361)
T ss_pred EeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC-ceeecCCCCCceEEEec
Confidence 999887 9999999988775 344443344678888888764 46666666332344433
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-14 Score=152.33 Aligned_cols=214 Identities=13% Similarity=0.094 Sum_probs=149.2
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.+||....... .+..+...+...+|+|||+.|+... ...|++||+.+++.. ......+...+++
T Consensus 183 ~~~l~i~D~~g~~~~--~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~------~l~~~~g~~~~~~ 254 (433)
T PRK04922 183 RYALQVADSDGYNPQ--TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE------LVASFRGINGAPS 254 (433)
T ss_pred eEEEEEECCCCCCce--EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE------EeccCCCCccCce
Confidence 457999998654433 4555677899999999999998542 357999999887642 2223344556889
Q ss_pred EcCCCcEEEE-eecCC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.+| .|++||+.+++. ..+..+......++|+|||
T Consensus 255 ~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-------------------------------~~lt~~~~~~~~~~~spDG 303 (433)
T PRK04922 255 FSPDGRRLALTLSRDGNPEIYVMDLGSRQL-------------------------------TRLTNHFGIDTEPTWAPDG 303 (433)
T ss_pred ECCCCCEEEEEEeCCCCceEEEEECCCCCe-------------------------------EECccCCCCccceEECCCC
Confidence 9999998764 44555 599999876542 2333444445678999999
Q ss_pred CEEEEEec-CC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGK-EG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
++|+..+. ++ .|+++|+.+++...+.........++|+|||+.|+....++ .|.+||+.+++.. .+...
T Consensus 304 ~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~---- 378 (433)
T PRK04922 304 KSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG---- 378 (433)
T ss_pred CEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCC----
Confidence 99887764 33 47778888777655444444455789999999998875543 5999999887654 33221
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLD 477 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~ 477 (762)
.......|+|||++++..+.+ +.|.++++..
T Consensus 379 -------~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g 412 (433)
T PRK04922 379 -------SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG 412 (433)
T ss_pred -------CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 123467899999998887653 4677888754
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=140.39 Aligned_cols=345 Identities=13% Similarity=0.161 Sum_probs=223.8
Q ss_pred EEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceee
Q 040987 55 CRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILS 134 (762)
Q Consensus 55 i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~ 134 (762)
...|+........+....+.-..-+.|||-|.||++-.-.-|.+|-=++-..++.|. |.+ |.-+.|||.. +
T Consensus 192 svfwN~~~n~p~~ie~RenWTetyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~E-------k 262 (698)
T KOG2314|consen 192 SVFWNSKFNEPSLIEERENWTETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HPG-VQFIDFSPNE-------K 262 (698)
T ss_pred EEEccccCCchhhhhhhhcceeeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CCC-ceeeecCCcc-------c
Confidence 467876654444444444443334889999999999998779999877666677664 665 9999999999 7
Q ss_pred eEEeeecC-----------CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCC
Q 040987 135 YCWTASLD-----------GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203 (762)
Q Consensus 135 ~l~s~s~d-----------~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
||+|-+.. ..++|||+.+|...+.+....
T Consensus 263 YLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~---------------------------------------- 302 (698)
T KOG2314|consen 263 YLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIK---------------------------------------- 302 (698)
T ss_pred eEEEecCCccccCcccCCCceEEEEEccccchhcceeccC----------------------------------------
Confidence 99987643 356777777777666554210
Q ss_pred ccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 204 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.....-.-+.||.|++|+|.-....|.||+....... ....-.-.+
T Consensus 303 -----------------------------~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~ll-----d~Kslki~g 348 (698)
T KOG2314|consen 303 -----------------------------SPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLL-----DKKSLKISG 348 (698)
T ss_pred -----------------------------CCccccceEEeccCCceeEEeccceEEEEecCceeee-----cccccCCcc
Confidence 1111123468999999999766689999998875543 222223457
Q ss_pred eEEEEEcCCCcEEEEeec-----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 284 LTVLAFHPTQRIVAAGDV-----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
|....|+|.++.||.-.. -..+.+-.+.+++.+ ++-.-|.-.-..
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~i------------------------------Rt~nlfnVsDck 398 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREI------------------------------RTKNLFNVSDCK 398 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCcccee------------------------------eeccceeeeccE
Confidence 889999999888875432 124555555444332 222223333345
Q ss_pred EEEecCCCEEEEEe----------cCCeEEEEecCCCce-eccCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcC
Q 040987 359 LIFSSDGAYLYSGG----------KEGVLVVWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMP 424 (762)
Q Consensus 359 ~~~s~~g~~l~s~~----------~dg~i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~ 424 (762)
+.|-.+|.+|+.-- .-..+.++.++.... +........+...+|-|.|..+++-+. ..++.+|.++
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e 478 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVE 478 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEee
Confidence 66777888877421 112355666554443 345566788999999999998876543 3578888887
Q ss_pred C-c---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCC--ceeeEEeecccccCCC
Q 040987 425 S-M---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDR--GISEVQVCERNHQPGD 495 (762)
Q Consensus 425 ~-~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~ 495 (762)
+ . +++..+.. ...+.+.|+|.|++++++. ..|.+.++|+.-.. ......
T Consensus 479 ~~~~~~~lVk~~dk------------~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e---------- 536 (698)
T KOG2314|consen 479 TNIKKPSLVKELDK------------KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE---------- 536 (698)
T ss_pred cCCCchhhhhhhcc------------cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc----------
Confidence 4 2 22222222 3567899999999988764 56899999987421 111111
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
....+.+.|.|.|+|+++++... ..+.|..-++|+.+..
T Consensus 537 --h~~at~veWDPtGRYvvT~ss~w---rhk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 537 --HFAATEVEWDPTGRYVVTSSSSW---RHKVDNGYRIFTFQGR 575 (698)
T ss_pred --ccccccceECCCCCEEEEeeehh---hhccccceEEEEeecH
Confidence 23467899999999999987321 1124555677776654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-14 Score=149.58 Aligned_cols=212 Identities=13% Similarity=0.098 Sum_probs=142.0
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEE
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
...|.++|.+ |... .....+...+.+.+|+|||+.|+... ...|.+||+.+++.. .+....+.+.+.+
T Consensus 175 ~~~L~~~D~d-G~~~-~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~------~l~~~~g~~~~~~ 246 (427)
T PRK02889 175 RYQLQISDAD-GQNA-QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR------VVANFKGSNSAPA 246 (427)
T ss_pred ccEEEEECCC-CCCc-eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE------EeecCCCCccceE
Confidence 4567888874 3333 23456677899999999999998543 246999999988643 2223345567899
Q ss_pred EcCCCcEEEE-eecCCeEEEEecc--CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 289 FHPTQRIVAA-GDVTGRILIWRGF--GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 289 ~sp~~~~l~~-~~~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
|+|||+.|+. .+.+|...||.+. ++. ...+..+........|+|||
T Consensus 247 ~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-------------------------------~~~lt~~~~~~~~~~wSpDG 295 (427)
T PRK02889 247 WSPDGRTLAVALSRDGNSQIYTVNADGSG-------------------------------LRRLTQSSGIDTEPFFSPDG 295 (427)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCC-------------------------------cEECCCCCCCCcCeEEcCCC
Confidence 9999998874 5677776777643 221 23344444455678899999
Q ss_pred CEEEEEec-CCeEEEE--ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCC
Q 040987 366 AYLYSGGK-EGVLVVW--QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 366 ~~l~s~~~-dg~i~~w--d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
++|+..+. ++...+| ++.+++...+...........|+|||++|+..+.++ .|.+||+.+++.......
T Consensus 296 ~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~----- 370 (427)
T PRK02889 296 RSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDT----- 370 (427)
T ss_pred CEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCC-----
Confidence 99887654 3444444 555555443333333345688999999999877654 599999988765433221
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCc---eEEEEEc
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENY---CIHFYSL 475 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~ 475 (762)
.......|+|||+.|+..+.++ .+.+.+.
T Consensus 371 -------~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 371 -------TRDESPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred -------CCccCceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 1235689999999998887553 4556666
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-14 Score=147.86 Aligned_cols=276 Identities=17% Similarity=0.198 Sum_probs=190.5
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCC
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEER 334 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (762)
+.+.+|++...... .........|.++.|+| +..++|.|..+|.|.+||+.......
T Consensus 222 ~~~~vW~~~~p~~P-----e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------------- 279 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTP-----ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------------- 279 (555)
T ss_pred ceEEEEecCCCCCc-----eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------------
Confidence 47999999987433 44445678999999999 56678888999999999997664310
Q ss_pred CCcccCCccccceeeeccccceeEEEEecCC--CEEEEEecCCeEEEEecCCCcee------c-cC------CCCCCeEE
Q 040987 335 PGVRDNDDADLCTTWHWHPSEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKKK------F-LP------RIGSPLLY 399 (762)
Q Consensus 335 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~~------~-~~------~~~~~v~~ 399 (762)
..........|..++..+.|..+. .-+++++.||.|..|+++.-... . .. .....+++
T Consensus 280 -------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~ 352 (555)
T KOG1587|consen 280 -------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATS 352 (555)
T ss_pred -------CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceee
Confidence 001123345689999999997644 44999999999999987753320 0 01 12236788
Q ss_pred EEeCC-CCCeEEEEecCCcEEEEEcCCceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 400 FTESP-DPSLSSISCADNQVHLLKMPSMEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 400 ~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
+.|.+ +-..+++|+..|.|..-.....+.. ..++++. ....|.+.|..+.++|=+..++..+.|-++++|...
T Consensus 353 ~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~----~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~ 428 (555)
T KOG1587|consen 353 LKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS----TFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED 428 (555)
T ss_pred EeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccc----cccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence 88877 4567888999998887443322111 1222221 122345899999999977666655569999999987
Q ss_pred -CCCceeeEEeecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 477 -DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 477 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
...++..+... ...+++++|||... .++++. .+|.+.+||+........... ..+
T Consensus 429 ~~~~Pl~~~~~~----------~~~v~~vaWSptrpavF~~~d---------~~G~l~iWDLl~~~~~Pv~s~---~~~- 485 (555)
T KOG1587|consen 429 VIASPLLSLDSS----------PDYVTDVAWSPTRPAVFATVD---------GDGNLDIWDLLQDDEEPVLSQ---KVC- 485 (555)
T ss_pred CCCCcchhhhhc----------cceeeeeEEcCcCceEEEEEc---------CCCceehhhhhccccCCcccc---ccc-
Confidence 44433333221 45599999999765 555555 899999999976544322221 122
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
....+.+.|+++|+.|++|...|++.+|++...
T Consensus 486 ~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 486 SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 446678899999999999999999999999643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-13 Score=132.76 Aligned_cols=346 Identities=14% Similarity=0.171 Sum_probs=235.0
Q ss_pred eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC-----
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG----- 303 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg----- 303 (762)
.......-++..+++||.|.+|++.....|.+|.-...... ..-....|..+.|||++++|.+-+..+
T Consensus 26 ~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l-------~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 26 TRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKL-------VRFRHPDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred ccccccCcchhheeecCcchheehhhccceEEccccchhhe-------eeeecCCceecccCcccceeeeeccCCccChh
Confidence 33333566889999999999999998889999998877632 222335799999999999999865433
Q ss_pred ----------eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc--ee-EEEEecCCCEEEE
Q 040987 304 ----------RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE--VS-VLIFSSDGAYLYS 370 (762)
Q Consensus 304 ----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~s~~g~~l~s 370 (762)
.+.+||+.++..+. .+.....+ .+ -+.|+-+.++++-
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~iv~------------------------------sf~~~~q~~~~Wp~~k~s~~D~y~AR 148 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMIVF------------------------------SFNGISQPYLGWPVLKFSIDDKYVAR 148 (561)
T ss_pred hccCCccccCceeEEeccCceeEe------------------------------eccccCCcccccceeeeeecchhhhh
Confidence 48999988876543 22222222 33 5788888887775
Q ss_pred EecCCeEEEEecCCCceecc--CCC-CCCeEEEEeCCCCC--eEEEE-----ecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKKKFL--PRI-GSPLLYFTESPDPS--LSSIS-----CADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~--~~~-~~~v~~~~~s~~~~--~l~~~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
.. ...++++++ ++..... ... ...+....|+|.++ -|++- ...+.+++|.+..+..+.+-.-.+
T Consensus 149 vv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk---- 222 (561)
T COG5354 149 VV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK---- 222 (561)
T ss_pred hc-cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----
Confidence 53 357999997 4443221 111 25688888998643 34442 346689999988766655432222
Q ss_pred CCCcccCceeeEEEeCCCCEEEEee-----------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRA-----------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~-----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
..-..+.|.+.|++|++-. ....++++++......... +..++|..++|.|+
T Consensus 223 ------~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-----------~~~~pVhdf~W~p~ 285 (561)
T COG5354 223 ------VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-----------DLKDPVHDFTWEPL 285 (561)
T ss_pred ------ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-----------cccccceeeeeccc
Confidence 1225688899888776432 2246788887643322221 11678999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICND 586 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~ 586 (762)
++.+++.+.- ....+.++|++.. ...-+. ...-+.+.|+|.+++++.++-| |.+.+||..+
T Consensus 286 S~~F~vi~g~-------~pa~~s~~~lr~N-l~~~~P--------e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 286 SSRFAVISGY-------MPASVSVFDLRGN-LRFYFP--------EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred CCceeEEecc-------cccceeecccccc-eEEecC--------CcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 9998887622 5678899999876 332221 3345668899999999998765 6799999876
Q ss_pred ccccc-cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 587 ELQQK-DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 587 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
..... .+ .....+-+.|||||+++.+.. |..|.|||+...... ..+.+.|.
T Consensus 350 rf~~~~~~-------------~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~ 408 (561)
T COG5354 350 RFKVAGAF-------------NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWD 408 (561)
T ss_pred ceEEEEEe-------------ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhcccc
Confidence 54433 22 234556678999999987652 678999999854332 45667888
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
|.|++..+.+.+.
T Consensus 409 p~~~~~ttsSs~~ 421 (561)
T COG5354 409 PSGQYVTTSSSCP 421 (561)
T ss_pred CCcccceeeccCC
Confidence 8888877776665
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=152.75 Aligned_cols=305 Identities=20% Similarity=0.223 Sum_probs=208.2
Q ss_pred ccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce--------eccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK--------KFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~--------~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.+..+..+..|...+..++.+++. .++++|+.||+|++|+...-.. ......+.++.++...+.+..+|++
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence 456778889999999999887654 9999999999999999875322 1233366789999999999999999
Q ss_pred ecCCcEEEEEcCCc--eE-----EEEEccCCCCCCCCCcccCceee-EEEeC-CCC-EEEEeecCceEEEEEcCCCCcee
Q 040987 413 CADNQVHLLKMPSM--EI-----IRSISGIKLPCPLPEEYKGLCRD-IAFNH-DGG-LVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 413 ~~d~~i~i~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~v~~-~~~s~-~~~-~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
+.||.|.+.+++.. .. .+....+. .+.+.+ -+|.. ++. .++.+...+.|..||++......
T Consensus 1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~---------~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKK---------DGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred cCCCeEEEEEccccccccceeeeeecccccC---------CCceEEeecccccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999999998752 11 11111111 123332 33333 233 68888888999999999888777
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.++...+ .+.|++++.+|.+.+++.|+ ..|.+.+||++-+..+.... .++ ..+++.+.
T Consensus 1188 ~lk~~~~--------hG~vTSi~idp~~~WlviGt---------s~G~l~lWDLRF~~~i~sw~----~P~-~~~i~~v~ 1245 (1431)
T KOG1240|consen 1188 RLKNQLR--------HGLVTSIVIDPWCNWLVIGT---------SRGQLVLWDLRFRVPILSWE----HPA-RAPIRHVW 1245 (1431)
T ss_pred hhhcCcc--------ccceeEEEecCCceEEEEec---------CCceEEEEEeecCceeeccc----Ccc-cCCcceEE
Confidence 7766555 67899999999999999999 78999999999776665543 355 56788887
Q ss_pred EcCCC---CeEEEEe--CCCcEEEEEcccccccccccCC----ceeeeeecc----cCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 563 FHPNR---RAAVSSS--YGGDFKVWICNDELQQKDLQSS----GWSCHAVGS----YKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 563 ~spd~---~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~----~~~~~~~~~----~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
.+|-. ...++++ ..+.|.+|++.++.....+... ...-..... .+........+..-+.++.+|+ |
T Consensus 1246 ~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd 1325 (1431)
T KOG1240|consen 1246 LCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSD 1325 (1431)
T ss_pred eeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCc
Confidence 77643 3444444 4678999999998665544211 000000000 1111222333333445666666 9
Q ss_pred CeEEEEeCCCCeEE------------------------------------------------EEe--------ccccCce
Q 040987 629 TVITLWDPDRNVLV------------------------------------------------AVI--------GETLTPI 652 (762)
Q Consensus 629 ~~i~iwd~~~~~~~------------------------------------------------~~l--------~~~~~~v 652 (762)
..|+.||....+.. ..+ ..|..+|
T Consensus 1326 ~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~I 1405 (1431)
T KOG1240|consen 1326 MKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPI 1405 (1431)
T ss_pred cceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchh
Confidence 99999996432110 000 1366778
Q ss_pred eEEEEeCCC-CEEEEEEcCCCCeEEEEE
Q 040987 653 MNMSFVGSS-EYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 653 ~~~~~s~dg-~~l~s~~~d~~~~v~vwd 679 (762)
+++++.... .+|++++.||. |++|.
T Consensus 1406 tdma~~~~~q~llvs~s~dG~--IkiWk 1431 (1431)
T KOG1240|consen 1406 TDMATLKSEQPLLVSSSRDGV--IKIWK 1431 (1431)
T ss_pred hhhhhhccCccEEEEecCCCe--eeecC
Confidence 888887643 58889999998 99993
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=144.04 Aligned_cols=312 Identities=14% Similarity=0.163 Sum_probs=223.3
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESP--DPSLSSISCADNQVHLL 421 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~ 421 (762)
...|..|.+.|..+.|...|..|++++.|..|.+||...+... ...+|...|....|-| +.+.+++.+.||.+++=
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 4678889999999999999999999999999999999988764 4566777888777876 34678888899999987
Q ss_pred EcCC-ceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 422 KMPS-MEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 422 d~~~-~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
.+.. +... ..+..|. +.|..++.-|+.. -+.+++.|+.+.-+|++.+.....+. +.......
T Consensus 215 ~i~~t~~~e~t~rl~~h~----------g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~--- 280 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHE----------GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKE--- 280 (559)
T ss_pred eeccccceecceeccccc----------CccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCcc---
Confidence 7654 2222 2333343 7889999999654 58889999999999998877655554 33322110
Q ss_pred ceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCce------eEEEE-EeecCCCCCceEEEEEcCCCCe
Q 040987 498 TVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE------FTLST-IVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 498 ~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~------~~~~~-~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.-....++..|... .+++++ .|..+++||.+.-... ..+.. ...... ...|++++|+.++.-
T Consensus 281 ~v~L~~Ia~~P~nt~~faVgG---------~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~-~v~ITgl~Ysh~~sE 350 (559)
T KOG1334|consen 281 RVGLYTIAVDPRNTNEFAVGG---------SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD-PVNITGLVYSHDGSE 350 (559)
T ss_pred ceeeeeEecCCCCccccccCC---------hhhhhhhhcccchhhccccchhhhcCCccccccC-cccceeEEecCCccc
Confidence 24678889999766 778887 7889999998753322 11111 111122 567999999987766
Q ss_pred EEEEeCCCcEEEEEcccccccccccCC--ceeeeeecccCC--CCeEEEEE-cCCCcEEEEEcC-CeEEEEeCCCCeEEE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSS--GWSCHAVGSYKK--KAMTAAAF-SADGSVLAVAAE-TVITLWDPDRNVLVA 643 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~--~~i~~~~~-s~dg~~la~~~d-~~i~iwd~~~~~~~~ 643 (762)
|.++-.|-.|++++-.-+.-....+.. ......+..+|. ..|..+-| -|...|+++|+| |.|.||+-.+++.+.
T Consensus 351 lLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~ 430 (559)
T KOG1334|consen 351 LLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR 430 (559)
T ss_pred eeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHH
Confidence 666666778999954332221111000 000111123343 44666654 688899999995 999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.+.+-..-|+|+.=+|--..||+.|-|.. |+||.-.+.
T Consensus 431 ~MegDr~VVNCLEpHP~~PvLAsSGid~D--VKIWTP~~~ 468 (559)
T KOG1334|consen 431 FMEGDRHVVNCLEPHPHLPVLASSGIDHD--VKIWTPLTA 468 (559)
T ss_pred HhhcccceEeccCCCCCCchhhccCCccc--eeeecCCcc
Confidence 99887778999999998899999999998 999976443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.2e-14 Score=146.75 Aligned_cols=234 Identities=15% Similarity=0.134 Sum_probs=152.5
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
..|.++|........+..+...+.+ .+|||||+.||+.+. ..|.+||+.+++... +....+.+.+.+|+|||+
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC-
Confidence 4677788876666677788888886 999999999999872 479999999887543 333445667899999995
Q ss_pred ccceeeeEEeeecCCeEEEEeCC--CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFS--VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
.++++.+.++...||.+. ++. .+.
T Consensus 253 -----~la~~~~~~g~~~Iy~~d~~~~~-~~~------------------------------------------------ 278 (427)
T PRK02889 253 -----TLAVALSRDGNSQIYTVNADGSG-LRR------------------------------------------------ 278 (427)
T ss_pred -----EEEEEEccCCCceEEEEECCCCC-cEE------------------------------------------------
Confidence 444567778877776543 222 111
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCeEEEEEc--cCchhhhheeeeeeeccCc
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRKLLIWKV--PDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~i~iwd~--~~~~~~~~~~~~~~~~~~~ 282 (762)
+..+........|+|||+.|+... ++...||.+ .+++.. ... .+..
T Consensus 279 ------------------------lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-----~lt-~~g~ 328 (427)
T PRK02889 279 ------------------------LTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-----RVT-FTGS 328 (427)
T ss_pred ------------------------CCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----EEe-cCCC
Confidence 111222344568999999988543 355556654 444321 222 2223
Q ss_pred CeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.....+|+|||++|+..+.++ .|.+||+.+++.. .+... .....+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-------------------------------~lt~~-~~~~~p 376 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-------------------------------ALTDT-TRDESP 376 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-------------------------------EccCC-CCccCc
Confidence 345678999999999876554 6999998765422 11111 223567
Q ss_pred EEecCCCEEEEEecCC---eEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 360 IFSSDGAYLYSGGKEG---VLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg---~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
.|+|||+.|+..+.++ .+.+.++.......+....+.+...+|+|-
T Consensus 377 ~~spdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 377 SFAPNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred eECCCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 9999999998877543 466667754333344445566777788763
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-13 Score=125.75 Aligned_cols=302 Identities=11% Similarity=0.097 Sum_probs=184.3
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCC-CEEEEEeCCeEEEEEccCchhhhheee-------e--ee
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSG-KYFGIRKQRKLLIWKVPDVEAERVVMR-------K--IT 277 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la~~~~~~i~iwd~~~~~~~~~~~~-------~--~~ 277 (762)
+++..|..|++||-.. ++...........|.|++|-|.+ +.|+++-.+.|.+|............. + ..
T Consensus 114 ava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~ 192 (445)
T KOG2139|consen 114 AVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQD 192 (445)
T ss_pred hhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeC
Confidence 7788999999999888 44434455566789999999965 567788888999998764322110000 1 11
Q ss_pred eccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.+| .+|++++|.+||..+++++. |..|.|||..++.... ......+.+
T Consensus 193 pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p------------------------------L~~~glgg~ 241 (445)
T KOG2139|consen 193 PGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP------------------------------LIPKGLGGF 241 (445)
T ss_pred CCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc------------------------------ccccCCCce
Confidence 233 68999999999999998865 6789999998775332 112234568
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCC-CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.-+.|||||.+|+.+.-|+..++|+... .......-..+.|...+|+|+|++|+.+.. +.-.+|.+.
T Consensus 242 slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~----------- 309 (445)
T KOG2139|consen 242 SLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT----------- 309 (445)
T ss_pred eeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe-----------
Confidence 8899999999999999999999995443 333334444558999999999999887643 344444433
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
|......+. .++....+-+-|+..-....--.. ..+.+.+++|.|.|.+||
T Consensus 310 ------------------f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l----------~cgeaq~lawDpsGeyLa 361 (445)
T KOG2139|consen 310 ------------------FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRL----------CCGEAQCLAWDPSGEYLA 361 (445)
T ss_pred ------------------ecCCCccccCcccceeeeeeccchhhhhhcCccc----------ccCccceeeECCCCCEEE
Confidence 211110000 111112222333321110000000 145688999999999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC---CCCeEEEEeCCCcEEEEEcc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP---NRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp---d~~~l~~~~~dg~i~iwd~~ 585 (762)
+.-...+... .....|.+||.+..-.......-...+. .-..++|+| ++.+|..+=..|.+.-|++.
T Consensus 362 v~fKg~~~v~-~~k~~i~~fdtr~sp~vels~cg~i~ge---~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 362 VIFKGQSFVL-LCKLHISRFDTRKSPPVELSYCGMIGGE---YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEcCCchhh-hhhhhhhhhcccccCceEEEecccccCC---CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 9863211000 0223566777765433332211111222 233456665 45666666566778777764
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-12 Score=119.31 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=167.7
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
...+++|..|..-+++|..+| .++|+.+.-+.... ..+....-.+..+-|-
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~----------------------------r~~~~~G~~~veMLfR 57 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESAS----------------------------RQFIDGGFKIVEMLFR 57 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhh----------------------------hccccCchhhhhHhhh
Confidence 344599999999999987776 89999754211000 0000000122222232
Q ss_pred cCCCEEEEE-ecC------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEcc
Q 040987 363 SDGAYLYSG-GKE------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISG 434 (762)
Q Consensus 363 ~~g~~l~s~-~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~ 434 (762)
.++|+.. |.+ ..+.+||-...+++.......+|.++.++++ .|++. ..+.|+||... +.+.++.+..
T Consensus 58 --~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 58 --SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred --hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec
Confidence 2344433 222 4699999777777777888899999999876 45544 67899999988 4666666655
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
...| ..+.+++-..+..+||.-+ .-|.|++.|+...+.-..... ..|...|.+++++-+|..+
T Consensus 133 ~~NP--------kGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I--------~AH~s~Iacv~Ln~~Gt~v 196 (346)
T KOG2111|consen 133 RSNP--------KGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSII--------NAHDSDIACVALNLQGTLV 196 (346)
T ss_pred ccCC--------CceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEE--------EcccCceeEEEEcCCccEE
Confidence 4422 2344444344455666655 459999999987654211111 1237889999999999999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
|+++. ...-|||||..++..+.++.. |-....|.+++|||++.+||++|+.|++.|+.+....
T Consensus 197 ATaSt--------kGTLIRIFdt~~g~~l~E~RR----G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 197 ATAST--------KGTLIRIFDTEDGTLLQELRR----GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEecc--------CcEEEEEEEcCCCcEeeeeec----CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 99994 455789999999999988864 4336689999999999999999999999999987644
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6e-12 Score=120.23 Aligned_cols=227 Identities=15% Similarity=0.061 Sum_probs=155.7
Q ss_pred eCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC-CCCCCcccCceeeEE-EeC-CCCEEEEeecCceEEEEEcCCC
Q 040987 402 ESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP-CPLPEEYKGLCRDIA-FNH-DGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 402 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~-~s~-~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.+.||+.++.. ..|.|++||..+..+...--+.... .......-....-+. |++ +|.+++..+. |...+.+...+
T Consensus 274 ~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~ 351 (668)
T COG4946 274 ANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG 351 (668)
T ss_pred cCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence 46789998875 7889999999875543322121100 000000000111111 333 5778887765 55777766554
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee-EEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV-CLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
-.+ +... ...|.-..+..+++-++.+. .|+ .+-+||.++++..... +. -+.
T Consensus 352 ~~i---qv~~---------~~~VrY~r~~~~~e~~vigt---------~dgD~l~iyd~~~~e~kr~e------~~-lg~ 403 (668)
T COG4946 352 YSI---QVGK---------KGGVRYRRIQVDPEGDVIGT---------NDGDKLGIYDKDGGEVKRIE------KD-LGN 403 (668)
T ss_pred eeE---EcCC---------CCceEEEEEccCCcceEEec---------cCCceEEEEecCCceEEEee------CC-ccc
Confidence 322 2111 44577777888888888887 555 8999999998754432 33 678
Q ss_pred eEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C----CeEE
Q 040987 558 ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E----TVIT 632 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d----~~i~ 632 (762)
|.++..+|||++++.+.....+.+.|+.++.....- ....+-|+.+.|||+++++|.+- + ..|+
T Consensus 404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-----------kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ik 472 (668)
T COG4946 404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-----------KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIK 472 (668)
T ss_pred eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-----------ccccceeEEEEEcCCceeEEEecCcceeeeeEE
Confidence 999999999999999998889999999998765443 23467899999999999999986 4 5799
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
++|+.+++....-. ....-.+.+|.|||++|..-+..
T Consensus 473 lydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~R 509 (668)
T COG4946 473 LYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLSAR 509 (668)
T ss_pred EEecCCCeEEEecC-CcccccCcccCCCCcEEEEEecc
Confidence 99999887765443 44445778999999999987654
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-12 Score=126.02 Aligned_cols=332 Identities=15% Similarity=0.189 Sum_probs=216.5
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
-+-+.|||.|.||++--..| |.+|--.+-. .++.+. | ..|.-+.|||
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~------------------------------r~~RF~-H-p~Vq~idfSP 259 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFD------------------------------RIQRFY-H-PGVQFIDFSP 259 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHH------------------------------HHHhcc-C-CCceeeecCC
Confidence 45789999999999987666 8899643221 122222 3 3588899999
Q ss_pred CCCEEEEEec-----------CCeEEEEecCCCceeccCC---CCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 364 DGAYLYSGGK-----------EGVLVVWQLDTGKKKFLPR---IGSPL-LYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 364 ~g~~l~s~~~-----------dg~i~~wd~~~~~~~~~~~---~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+.++|++-+. ...+++||+.+|....... .+..+ .-+.||.|++++|.-.. +.|.||+..+..+
T Consensus 260 ~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 260 NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceee
Confidence 9999998652 2579999999998854222 22222 23679999999997654 6899999887443
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
+ ......+ ..|....|+|.+..||.-+.. ..+.+..+.+.+.+...... ...-..
T Consensus 339 l---d~Kslki-------~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlf----------nVsDck 398 (698)
T KOG2314|consen 339 L---DKKSLKI-------SGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLF----------NVSDCK 398 (698)
T ss_pred e---cccccCC-------ccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccce----------eeeccE
Confidence 3 2222222 678899999999888875532 35667777776655543322 222345
Q ss_pred EEEecCCCeEEEEeeeccccC-CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcE
Q 040987 504 VALSQDGSLMSTVDIKLAEEG-IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDF 579 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i 579 (762)
+-|-.+|.+|+.--.+..... .+.-..+.|+.++....+..... - ...|...+|-|.|..+++-+.+ .++
T Consensus 399 LhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-----l-ke~vi~FaWEP~gdkF~vi~g~~~k~tv 472 (698)
T KOG2314|consen 399 LHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-----L-KESVIAFAWEPHGDKFAVISGNTVKNTV 472 (698)
T ss_pred EEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-----c-chheeeeeeccCCCeEEEEEccccccce
Confidence 667788988887654322221 22344677777776655433321 2 6688999999999988776533 578
Q ss_pred EEEEcccc-cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCC--eEEEEeccccCce
Q 040987 580 KVWICNDE-LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRN--VLVAVIGETLTPI 652 (762)
Q Consensus 580 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~--~~~~~l~~~~~~v 652 (762)
.+|.+.+. ...... . .......+.+.|+|.|++++.+. .|.+.++|+.-. +...... | ...
T Consensus 473 sfY~~e~~~~~~~lV--------k--~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e-h-~~a 540 (698)
T KOG2314|consen 473 SFYAVETNIKKPSLV--------K--ELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE-H-FAA 540 (698)
T ss_pred eEEEeecCCCchhhh--------h--hhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc-c-ccc
Confidence 88988742 111111 0 11245667899999999998874 689999999853 3332322 3 346
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+.+.|.|.|+|+++++.-.. -.+++|=.++.+++.
T Consensus 541 t~veWDPtGRYvvT~ss~wr-----hk~d~GYri~tfqGr 575 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWR-----HKVDNGYRIFTFQGR 575 (698)
T ss_pred ccceECCCCCEEEEeeehhh-----hccccceEEEEeecH
Confidence 78999999999999975432 123444445444444
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4e-14 Score=145.82 Aligned_cols=282 Identities=12% Similarity=0.102 Sum_probs=195.1
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEE-EEE-eCCeEEEEEccCchhh-hheeeeeeeccCcCeEEEE
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR-KQRKLLIWKVPDVEAE-RVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~-~~~~i~iwd~~~~~~~-~~~~~~~~~~~~~~v~~~~ 288 (762)
.++.+.+|+++..... .....-...|.++.|+|....+ |+| .+|.|.+||+..+... ..........|..++..+.
T Consensus 220 ~~~~~~vW~~~~p~~P-e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 220 PDGVLLVWSLKNPNTP-ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CCceEEEEecCCCCCc-eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 3458999999988444 6667778899999999966554 544 7999999999987753 2233344557999999999
Q ss_pred EcCCCc--EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-CC
Q 040987 289 FHPTQR--IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DG 365 (762)
Q Consensus 289 ~sp~~~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g 365 (762)
|..+-. -+++++.||.|..|+++.-..-... .... .......-......++++.|.+ +-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~--~~~~----------------~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG--LLLE----------------SKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhh--cccc----------------cccccccccccccceeeEeeccCCC
Confidence 987544 4899999999999986543211000 0000 0000000012234578899977 44
Q ss_pred CEEEEEecCCeEEEEecC---CCc------eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccC
Q 040987 366 AYLYSGGKEGVLVVWQLD---TGK------KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~---~~~------~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 435 (762)
..++.|+.+|.|..-+.. ... ......|.++|.++.++|=+..++..+.|-+++||... ...++..+..+
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~ 440 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSS 440 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhc
Confidence 678899999998774333 222 11345577899999999988776666679999999987 55555555554
Q ss_pred CCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
. ..+.+++|||.. ..++++..+|.+.+||+.............. ....+.+.|+++|+.|+
T Consensus 441 ~----------~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--------~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 441 P----------DYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--------SPALTRVRWSPNGKLLA 502 (555)
T ss_pred c----------ceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--------ccccceeecCCCCcEEE
Confidence 4 568999999965 4567777799999999976543222211111 34567888899999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCC
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
+|+ ..|.+.+|++...
T Consensus 503 vGd---------~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 503 VGD---------ANGTTHILKLSES 518 (555)
T ss_pred Eec---------CCCcEEEEEcCch
Confidence 999 8899999999643
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=136.64 Aligned_cols=254 Identities=15% Similarity=0.130 Sum_probs=161.8
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE-----cCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF-----HPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+....++-.|.+|+......+++|+...+.....++.+...... ...|-+| .|++--|+.|-..|.|.+.|..
T Consensus 125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~gt-~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~ 203 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKGT-SPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI 203 (636)
T ss_pred ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccCC-CCceecccccccCCCCcceEEeeccCceEEecch
Confidence 445566677788998888889999999865443223322222222 2223333 4566678888888999998864
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceecc
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
..+..... + ....-....|+++.|-|.+. .++.+-.+|.++++|..-..
T Consensus 204 ~~~~sklf----n----------------------e~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~---- 253 (636)
T KOG2394|consen 204 NFEVSKLF----N----------------------EERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC---- 253 (636)
T ss_pred hhHHHHhh----h----------------------hcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc----
Confidence 42110000 0 00011236799999988553 45555678999999872110
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 391 PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
.... .+....+++..+......+. .+..++..+.-- ++.|..++|+|||++||+.++||.+
T Consensus 254 -~~t~--p~~~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~----------~g~in~f~FS~DG~~LA~VSqDGfL 314 (636)
T KOG2394|consen 254 -GATA--PSYQALKDGDQFAILTSKSK------KTRNPVARWHIG----------EGSINEFAFSPDGKYLATVSQDGFL 314 (636)
T ss_pred -cCCC--CcccccCCCCeeEEeeeecc------ccCCccceeEec----------cccccceeEcCCCceEEEEecCceE
Confidence 0000 11112234444443321110 001122222111 2678899999999999999999999
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
+|||..+.+.+..+... -+...|++|||||+||++|+ +|.-|.||.+...+.+..-
T Consensus 315 RvF~fdt~eLlg~mkSY----------FGGLLCvcWSPDGKyIvtGG---------EDDLVtVwSf~erRVVARG----- 370 (636)
T KOG2394|consen 315 RIFDFDTQELLGVMKSY----------FGGLLCVCWSPDGKYIVTGG---------EDDLVTVWSFEERRVVARG----- 370 (636)
T ss_pred EEeeccHHHHHHHHHhh----------ccceEEEEEcCCccEEEecC---------CcceEEEEEeccceEEEec-----
Confidence 99999887655443322 45689999999999999999 8899999999988765543
Q ss_pred cCCCCCceEEEEEcC
Q 040987 551 EPHRDAGISAVAFHP 565 (762)
Q Consensus 551 ~~h~~~~v~~~~~sp 565 (762)
++| ...|..|+|.|
T Consensus 371 qGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 371 QGH-KSWVSVVAFDP 384 (636)
T ss_pred ccc-ccceeeEeecc
Confidence 689 99999999987
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-13 Score=123.58 Aligned_cols=240 Identities=14% Similarity=0.193 Sum_probs=163.7
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cC------c
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-EN------Y 468 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d------g 468 (762)
...+++|+.|...++++ .+...+||+.+..+......-+. +.+.-+..--..++++..+ .+ +
T Consensus 7 ~~lsvs~NQD~ScFava-~~~Gfriyn~~P~ke~~~r~~~~----------~G~~~veMLfR~N~laLVGGg~~pky~pN 75 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVA-TDTGFRIYNCDPFKESASRQFID----------GGFKIVEMLFRSNYLALVGGGSRPKYPPN 75 (346)
T ss_pred ceeEEEEccCCceEEEE-ecCceEEEecCchhhhhhhcccc----------CchhhhhHhhhhceEEEecCCCCCCCCCc
Confidence 45569999999999888 45568999987633222111111 1111111112234444433 22 5
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLST 547 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~ 547 (762)
.+.|||-...+++.++.. ..+|.++.++++- |++. ..+.|++|... ..+....+.+
T Consensus 76 kviIWDD~k~~~i~el~f-----------~~~I~~V~l~r~r--iVvv----------l~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 76 KVIIWDDLKERCIIELSF-----------NSEIKAVKLRRDR--IVVV----------LENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred eEEEEecccCcEEEEEEe-----------ccceeeEEEcCCe--EEEE----------ecCeEEEEEcCCChhheeeeec
Confidence 799999777777766655 5679999998764 4444 34699999988 4455555544
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
... +....+++-+.+..+||.-+ .-|.|+|-|+...+.... ....+|...|.+++.+-+|.++|++
T Consensus 133 ---~~N-PkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p---------~~I~AH~s~Iacv~Ln~~Gt~vATa 199 (346)
T KOG2111|consen 133 ---RSN-PKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAP---------SIINAHDSDIACVALNLQGTLVATA 199 (346)
T ss_pred ---ccC-CCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCc---------eEEEcccCceeEEEEcCCccEEEEe
Confidence 222 33444444333445566533 458999999976655211 2235799999999999999999999
Q ss_pred c-CCe-EEEEeCCCCeEEEEecccc--CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 627 A-ETV-ITLWDPDRNVLVAVIGETL--TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 627 ~-d~~-i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+ .|+ |+|||..+|+++..++... ..|.+++||||+.+|+.+|+.|+ |+|+.+....
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT--lHiF~l~~~~ 259 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT--LHIFSLRDTE 259 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe--EEEEEeecCC
Confidence 8 665 8999999999999986433 34999999999999999999998 9999987644
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.6e-12 Score=123.77 Aligned_cols=281 Identities=12% Similarity=0.023 Sum_probs=177.0
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec----------CCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA----------DNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
++|.+.|.++++.+.....+..-..+ +|||++.++++.. +..|.+||..+++.+..+.-...+...
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~--- 102 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFL--- 102 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhh---
Confidence 78999999998876544433333344 9999999888765 678999999999999888643321000
Q ss_pred ccCceeeEEEeCCCCEEEEee-c-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-E-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.......++++|||++|++.. . +..|.+.|+.+++.+.++.... ...-+..+++..++.+
T Consensus 103 ~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-----------~~~vy~t~e~~~~~~~------- 164 (352)
T TIGR02658 103 VGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-----------CYHIFPTANDTFFMHC------- 164 (352)
T ss_pred ccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-----------CcEEEEecCCccEEEe-------
Confidence 002334789999999998765 3 6899999999999888776522 1122222222222222
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce-EEEEEcC-CCCeEEEEeCCCcEEEEEcccccccccccCCceee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-SAVAFHP-NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSC 600 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v-~~~~~sp-d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 600 (762)
.|+......+.+...........+.+. ...+ ..-.|++ +|+++..... |+|.+.|+......... .|..
T Consensus 165 ----~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~---~~~~ 235 (352)
T TIGR02658 165 ----RDGSLAKVGYGTKGNPKIKPTEVFHPE-DEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP---AIEA 235 (352)
T ss_pred ----ecCceEEEEecCCCceEEeeeeeecCC-ccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc---eeee
Confidence 222333322222221111111111110 0000 0014455 7877776665 99999997554433222 2221
Q ss_pred eeec----ccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC-EE
Q 040987 601 HAVG----SYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE-YL 664 (762)
Q Consensus 601 ~~~~----~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~-~l 664 (762)
.... .-..+.+.-++++|||+.+.+.. .+.|.++|..+++.+..+.. ...+..++++||++ +|
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLL 314 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEE
Confidence 1111 11234445599999999888742 26899999999999998863 35789999999999 77
Q ss_pred EEEE-cCCCCeEEEEECCCCceeeEE
Q 040987 665 VATS-WGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 665 ~s~~-~d~~~~v~vwd~~~~~~~~~~ 689 (762)
++.. .++. |.+.|+.+++.+.++
T Consensus 315 yvtn~~s~~--VsViD~~t~k~i~~i 338 (352)
T TIGR02658 315 YALSTGDKT--LYIFDAETGKELSSV 338 (352)
T ss_pred EEeCCCCCc--EEEEECcCCeEEeee
Confidence 7766 4555 999999999998876
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.8e-14 Score=148.00 Aligned_cols=364 Identities=11% Similarity=0.062 Sum_probs=211.1
Q ss_pred EecCCcceeeeecCcccccCCceeecCC-CEEEEEe-CCEEEEEEcccc-------eEEeeecCCccceeEEEEeCCCCc
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTSTG-------LQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg-~~la~~~-~~~i~iwd~~~~-------~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
|+..+.-...+..|...|.. ++.+++. .++++|+ ||+|+|||...- +...++..-...+.++.+.+.+
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k-~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-- 1110 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIK-LAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-- 1110 (1431)
T ss_pred CCccceEeehhhhccccccc-eeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC--
Confidence 77777777788999999997 7777655 9999999 699999998531 2333444457789999999999
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCc--c-----eEEEEEec--cceEEEeecccccCCcccCCCCCceEEEEEeeecccc
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVP--E-----LLKTIDVK--FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRET 199 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~--~-----~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (762)
..+|.++.||.|++.++..- + +.+....+ ..+.+| .+|........+
T Consensus 1111 -----~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m-------------------~a~~~~~~S~~l 1166 (1431)
T KOG1240|consen 1111 -----DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSM-------------------HAFTAIVQSHVL 1166 (1431)
T ss_pred -----CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEe-------------------ecccccccceeE
Confidence 57888899999999998762 2 11111112 234444 222221111001
Q ss_pred CcCCccCCCCCCccccEEEEecCCccccce-eeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeee
Q 040987 200 TKSHKKEPRPNTMNGRICKCNLTESRLAGG-VTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
+.+...+.|..||+........ ......+.|++++.+|.+.+++.| +.|.+.+||++-+.. +....
T Consensus 1167 --------vy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~----i~sw~ 1234 (1431)
T KOG1240|consen 1167 --------VYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVP----ILSWE 1234 (1431)
T ss_pred --------EEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCce----eeccc
Confidence 3355778899999987766522 223356789999999999999866 689999999997763 33444
Q ss_pred eccCcCeEEEEEcCC---CcEEEEe-e-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 278 LHHTKKLTVLAFHPT---QRIVAAG-D-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~---~~~l~~~-~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
..+..++..+..+|- ....+++ + ..+.|.+|++.++...... ......+.+....... ..-+.+
T Consensus 1235 ~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl---------~~s~~~p~ls~~~Ps~--~~~kp~ 1303 (1431)
T KOG1240|consen 1235 HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVL---------WASDGAPILSYALPSN--DARKPD 1303 (1431)
T ss_pred CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEE---------EcCCCCcchhhhcccc--cCCCCC
Confidence 456678888877763 2344444 3 5788999999887432211 0000000000000000 000012
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEE-EEcCC----
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHL-LKMPS---- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i-~d~~~---- 425 (762)
.-......+...+..+++|+.|..|+.||....+... ..+..........+.+ ..++.++.--...+ +....
T Consensus 1304 ~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~ 1382 (1431)
T KOG1240|consen 1304 SLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTE 1382 (1431)
T ss_pred cccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchh
Confidence 2222233444455688999999999999988766541 1111111111111111 11111111000000 11110
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEE
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYS 474 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d 474 (762)
+....... ..+......|...|.++++.... .+|++++.||.|++|.
T Consensus 1383 ~~~~~~~~~--~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1383 ALRENQKLR--PGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hcccccccc--cCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 11111111 11122233456788888876643 5788899999999993
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-12 Score=131.54 Aligned_cols=459 Identities=12% Similarity=0.149 Sum_probs=286.2
Q ss_pred cccCCceeecCCCEEEEEe-CCEEEEEEcccce---------------EEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 74 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL---------------QISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~---------------~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
...| ++|+....|+|.|+ ||.++|..+.+.. .-++|.||.+.|.-+.|..+.+ -|-
T Consensus 16 kL~c-~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-------KLT 87 (1189)
T KOG2041|consen 16 KLHC-AEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-------KLT 87 (1189)
T ss_pred eEEE-EEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-------ccc
Confidence 3455 99999999999999 7999999876432 1257889999999999999984 344
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|+..+|.|.||-+-.|.......
T Consensus 88 tSDt~GlIiVWmlykgsW~EEMi--------------------------------------------------------- 110 (1189)
T KOG2041|consen 88 TSDTSGLIIVWMLYKGSWCEEMI--------------------------------------------------------- 110 (1189)
T ss_pred ccCCCceEEEEeeecccHHHHHh---------------------------------------------------------
Confidence 88899999999987765332211
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIV 296 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l 296 (762)
.....+.|.+++|..||..++ +-.||.|.+=.++........++- .....+.|++|.+.+
T Consensus 111 -------------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg------~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 111 -------------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG------QLLAHVLWSEDLEQA 171 (1189)
T ss_pred -------------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch------heccceeecccHHHH
Confidence 111234567888888998887 557888877777665432111111 123468899999998
Q ss_pred EEeecCCeEEEEeccCCceeeccc-ccccccccccccCCCCcccCCccccceeeeccccceeEEEE--------ecCCCE
Q 040987 297 AAGDVTGRILIWRGFGDRTFATND-NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF--------SSDGAY 367 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--------s~~g~~ 367 (762)
+.+-.+|.+.++|..++-..+... ...++. ..+......|..+.| -||...
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~t--------------------g~~s~~~~kia~i~w~~g~~~~v~pdrP~ 231 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGT--------------------GIFSNFPTKIAEIEWNTGPYQPVPPDRPR 231 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeee--------------------eeecCCCccccceeeccCccccCCCCCCE
Confidence 888889999999976652221110 000100 011111122444444 257788
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---------CcEEEEEcCCceEEEEEccCCCC
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---------NQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
|+.+-..|.+.+..-.+.....+...+..+..+.|+++|..|++++.+ +.|++|..- |..+.+++...
T Consensus 232 lavcy~nGr~QiMR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i~gtlkvpg-- 308 (1189)
T KOG2041|consen 232 LAVCYANGRMQIMRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHIVGTLKVPG-- 308 (1189)
T ss_pred EEEEEcCceehhhhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhheEEEecCC--
Confidence 999988898888765554444444555778899999999999998754 245555443 67777777655
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..|++++|-..|-.++.+ -|+.|++-+++..-. ..... ..+.+--.+.-+
T Consensus 309 --------~~It~lsWEg~gLriA~A-vdsfiyfanIRP~yk---Wgy~e-------------~TvVy~y~~~e~----- 358 (1189)
T KOG2041|consen 309 --------SCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYK---WGYIE-------------ETVVYVYQKEEL----- 358 (1189)
T ss_pred --------ceeeeeEEcCCceEEEEE-ecceEEEEeecccce---EEEee-------------eEEEEEEccCCC-----
Confidence 678999999888777775 577888887764321 11110 011111111000
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSG 597 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~ 597 (762)
-...|.+||..+.+..... -....+++++.+--.|+.-..|+.+.-++.-. ......+
T Consensus 359 --------p~y~i~Fwdtk~nek~vK~---------V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l---- 417 (1189)
T KOG2041|consen 359 --------PQYGIMFWDTKTNEKTVKT---------VTHFENMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFL---- 417 (1189)
T ss_pred --------cceEEEEEecccChhhhhh---------hcceeehheecccEEEEeccccCCCcchhhhhcccceEEE----
Confidence 2346899999988764332 12345677776665666666677666553211 1111100
Q ss_pred eeeeeecccCCCCeEE---EEEcCCCcEEEEEcCCeEEEEeCCCCeE--------------------------------E
Q 040987 598 WSCHAVGSYKKKAMTA---AAFSADGSVLAVAAETVITLWDPDRNVL--------------------------------V 642 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~---~~~s~dg~~la~~~d~~i~iwd~~~~~~--------------------------------~ 642 (762)
.-|...+..-...++. .-..-++.+++.++...+.+|.....+. .
T Consensus 418 ~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~ 497 (1189)
T KOG2041|consen 418 QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYST 497 (1189)
T ss_pred eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccc
Confidence 0011112111222222 1122366777778877788887432110 1
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.++.|..++|..++.+. ++|..+-..|. |.-|.+.+..+..++.....
T Consensus 498 kt~~G~~DpICAl~~sd--k~l~vareSG~--I~rySl~nv~l~n~y~~n~~ 545 (1189)
T KOG2041|consen 498 KTLLGSKDPICALCISD--KFLMVARESGG--IYRYSLNNVVLTNSYPVNPS 545 (1189)
T ss_pred eeeccCCCcceeeeecc--eEEEEEeccCc--eEEEEecceeeeeccccCch
Confidence 23445667788888765 78888888887 99999999988887766554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=134.75 Aligned_cols=286 Identities=14% Similarity=0.181 Sum_probs=207.1
Q ss_pred cccceeEEEEecCCCEEE-EEecCCeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~-s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
|...-+.+..+|||++++ +|.....|++||+..-...........+.. .-++.|-..++.-..|..|.+-... |...
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~-G~hy 128 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY-GRHY 128 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc-Ceee
Confidence 566778899999999865 455668999999998777666655554444 4456666666666667766654322 2211
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.. .-. ..-.+++++.-.--|.+++....|+-+++..|.-+..+... ...+.++..++.
T Consensus 129 ~~-RIP-----------~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~----------~~~lN~v~in~~ 186 (703)
T KOG2321|consen 129 RT-RIP-----------KFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD----------SGELNVVSINEE 186 (703)
T ss_pred ee-ecC-----------cCCccccccCCCccEEEeecCcceEEEEccccccccccccc----------cccceeeeecCc
Confidence 11 111 12345666543333555555567999999998877666543 567999999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe-ecCCC----CCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPHR----DAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h~----~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
..+|++|+ .+|.|.+||.++......+.... ...|+ ...|+++.|+.||-.+++|+.+|.+.|||+
T Consensus 187 hgLla~Gt---------~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 187 HGLLACGT---------EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred cceEEecc---------cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999998 89999999999887766665321 12230 234999999999999999999999999999
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCC--CcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD--GSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d--g~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
+..+....- .+....+|..+.|-+. +..+++.....++|||-.+|+....+. ....++.+++-|++-
T Consensus 258 Ra~~pl~~k----------dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-pt~~lND~C~~p~sG 326 (703)
T KOG2321|consen 258 RASKPLLVK----------DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIE-PTSDLNDFCFVPGSG 326 (703)
T ss_pred ccCCceeec----------ccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecc-ccCCcCceeeecCCc
Confidence 988766544 2344678889999775 456666667889999999999999887 455699999999999
Q ss_pred EEEEEEcCCCCeEEEEECCC
Q 040987 663 YLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~ 682 (762)
++++|-.++. +..|=+..
T Consensus 327 m~f~Ane~~~--m~~yyiP~ 344 (703)
T KOG2321|consen 327 MFFTANESSK--MHTYYIPS 344 (703)
T ss_pred eEEEecCCCc--ceeEEccc
Confidence 9999988877 66555443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-13 Score=133.37 Aligned_cols=308 Identities=11% Similarity=0.122 Sum_probs=214.9
Q ss_pred cccEEEEecCCccccceee-----------------------eccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCch
Q 040987 213 NGRICKCNLTESRLAGGVT-----------------------LAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVE 267 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~-----------------------~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~ 267 (762)
-+.|+||++..++.+...+ ..++..-+.|..+|||+|+. +| ..-.|++||+....
T Consensus 6 ~NdVkiYnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS 85 (703)
T KOG2321|consen 6 VNDVKIYNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS 85 (703)
T ss_pred cCceEEEEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccce
Confidence 3578888887776662222 23667788999999999996 44 57899999999876
Q ss_pred hhhheeeeeeeccCc-CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 268 AERVVMRKITLHHTK-KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
. ++...-.+ .|.-.-++.|-..++.-..|.+|.+....+. .+.
T Consensus 86 L------KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~-hy~----------------------------- 129 (703)
T KOG2321|consen 86 L------KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR-HYR----------------------------- 129 (703)
T ss_pred e------eeeecccccceeEEEeccchhhheEeecCceeeehhhcCe-eee-----------------------------
Confidence 5 33333333 3444445666666666667887776653221 000
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+ ...-..++++.-..-|+.++....|+-++++.|+...- ....+.+.++..++-..+|++|+.+|.|..||.+.
T Consensus 130 ~RI---P~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 130 TRI---PKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRD 206 (703)
T ss_pred eec---CcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchh
Confidence 000 01123445544334466666667899999999998653 33447899999999999999999999999999998
Q ss_pred ceEEEEEccCCCCCCCCC--cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 MEIIRSISGIKLPCPLPE--EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
......+..... +.... .....|+++.|+.+|-.+++|+.+|.+.|||+++.+++..-... . ..+|..
T Consensus 207 ksrv~~l~~~~~-v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~---~------e~pi~~ 276 (703)
T KOG2321|consen 207 KSRVGTLDAASS-VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG---Y------ELPIKK 276 (703)
T ss_pred hhhheeeecccc-cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC---C------ccceee
Confidence 766666543322 00000 01135899999999999999999999999999988765443221 1 567889
Q ss_pred EEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 504 VALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 504 ~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
+.|.+. +..+++. ....++|||-.+++....+.. ...++.+++-|++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~----------Dk~~~kiWd~~~Gk~~asiEp-------t~~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSM----------DKRILKIWDECTGKPMASIEP-------TSDLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEec----------chHHhhhcccccCCceeeccc-------cCCcCceeeecCCceEEEecCCCccee
Confidence 999775 4566666 557999999999988766542 456999999999999999998887776
Q ss_pred EEccc
Q 040987 582 WICND 586 (762)
Q Consensus 582 wd~~~ 586 (762)
|=+..
T Consensus 340 yyiP~ 344 (703)
T KOG2321|consen 340 YYIPS 344 (703)
T ss_pred EEccc
Confidence 65543
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=125.06 Aligned_cols=166 Identities=11% Similarity=0.206 Sum_probs=116.2
Q ss_pred EEEEEEecCCCeEEEEeee-ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE--eCCC
Q 040987 501 VTLVALSQDGSLMSTVDIK-LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS--SYGG 577 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~--~~dg 577 (762)
-..+.|+|+|.+|++-... ....+...-+...+|.++.......... ... .+.|.+++|+|+|+.+|+. ..++
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~---l~~-~~~I~~~~WsP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIE---LKK-EGPIHDVAWSPNGNEFAVIYGSMPA 83 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceee---ccC-CCceEEEEECcCCCEEEEEEccCCc
Confidence 4568899999988876642 1111212334566666644332222111 122 4579999999999987654 3567
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
.+.+||++ ++....+ +...+..+.|||+|++|++++ .|.|.+||+++.+.+.... |. .+.
T Consensus 84 ~v~lyd~~-~~~i~~~-------------~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t 147 (194)
T PF08662_consen 84 KVTLYDVK-GKKIFSF-------------GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DAT 147 (194)
T ss_pred ccEEEcCc-ccEeEee-------------cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEE
Confidence 99999996 3333333 356778999999999999885 4789999999999988875 33 478
Q ss_pred EEEEeCCCCEEEEEEc------CCCCeEEEEECCCCceeeEE
Q 040987 654 NMSFVGSSEYLVATSW------GSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~------d~~~~v~vwd~~~~~~~~~~ 689 (762)
.++|||||++|++++. |+. ++||+.. |+++...
T Consensus 148 ~~~WsPdGr~~~ta~t~~r~~~dng--~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 148 DVEWSPDGRYLATATTSPRLRVDNG--FKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEcCCCCEEEEEEeccceecccc--EEEEEec-CeEeEec
Confidence 9999999999999875 454 8999974 6555443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.8e-12 Score=131.03 Aligned_cols=187 Identities=12% Similarity=0.132 Sum_probs=146.9
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccC----CceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSS----PPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAP 116 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~----~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~ 116 (762)
+...++.+..+..+.+|+...........+...... -+.++++.=++++|. -+.|++|+..-.+.-..+.||.+.
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~ 177 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS 177 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCc
Confidence 355777788889999999988777666666544321 134577778899998 599999998743333468999999
Q ss_pred eeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeec
Q 040987 117 VTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDT 196 (762)
Q Consensus 117 V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (762)
|..+.|+.|| .+++|.|.|+++|+|++++++...
T Consensus 178 iF~i~~s~dg-------~~i~s~SdDRsiRlW~i~s~~~~~--------------------------------------- 211 (967)
T KOG0974|consen 178 IFSIVTSLDG-------RYIASVSDDRSIRLWPIDSREVLG--------------------------------------- 211 (967)
T ss_pred eEEEEEccCC-------cEEEEEecCcceeeeecccccccC---------------------------------------
Confidence 9999999999 799999999999999999876432
Q ss_pred cccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee
Q 040987 197 RETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 197 ~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
....+|+..|..++|.|+ +.+.++.|.+.++|+....+.. .
T Consensus 212 --------------------------------~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~~~l~------~ 252 (967)
T KOG0974|consen 212 --------------------------------CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNGTQLE------V 252 (967)
T ss_pred --------------------------------cccccccceeEEEEeccc-eeEEeccceEEEEEecccceeh------h
Confidence 134568888999999999 4445779999999977665542 3
Q ss_pred eecc-CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 277 TLHH-TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 277 ~~~~-~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+| ...|..++..++...+++++.|+.+++|++...
T Consensus 253 y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 253 YDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 3444 457999999999999999999999999997544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.4e-12 Score=126.48 Aligned_cols=513 Identities=12% Similarity=0.085 Sum_probs=301.7
Q ss_pred EEEeecCCcceeEEEEecCCCeEEEEecCC----cce------------eeeecCcccccCCceeecCCCEEEEEe-CCE
Q 040987 33 ILIERKPRSRSFIFAVARSSGLCRTAEYPA----VNS------------KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNT 95 (762)
Q Consensus 33 ~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~----~~~------------~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~ 95 (762)
.+.+.+....+.++|.|+.||.+++..+.+ .+. .++.||...|.. +.|+.+.+.|-+.. +|.
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~v-vTWNe~~QKLTtSDt~Gl 94 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMV-VTWNENNQKLTTSDTSGL 94 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEE-EEeccccccccccCCCce
Confidence 344445555688999999999999988763 111 257999999997 99999999998888 699
Q ss_pred EEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeeccc
Q 040987 96 VSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSL 173 (762)
Q Consensus 96 i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~ 173 (762)
|.||=+-.|.=...+ .-....|.+++|..||+ -++....||.|.|=.++..+
T Consensus 95 IiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-------kIcIvYeDGavIVGsvdGNR------------------- 148 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-------KICIVYEDGAVIVGSVDGNR------------------- 148 (1189)
T ss_pred EEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-------EEEEEEccCCEEEEeeccce-------------------
Confidence 999998776533222 23457799999999994 55678889888775543221
Q ss_pred ccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE
Q 040987 174 LRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR 253 (762)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~ 253 (762)
||.-+ +. ......+.|++|.+.+..+
T Consensus 149 --------------------------------------------IwgKe----Lk------g~~l~hv~ws~D~~~~Lf~ 174 (1189)
T KOG2041|consen 149 --------------------------------------------IWGKE----LK------GQLLAHVLWSEDLEQALFK 174 (1189)
T ss_pred --------------------------------------------ecchh----cc------hheccceeecccHHHHHhh
Confidence 12110 00 0112356788887766543
Q ss_pred -eCCeEEEEEccCchhhhhee------eeeeeccCcCeEEEEEc--------CCCcEEEEeecCCeEEEEeccCCceeec
Q 040987 254 -KQRKLLIWKVPDVEAERVVM------RKITLHHTKKLTVLAFH--------PTQRIVAAGDVTGRILIWRGFGDRTFAT 318 (762)
Q Consensus 254 -~~~~i~iwd~~~~~~~~~~~------~~~~~~~~~~v~~~~~s--------p~~~~l~~~~~dg~v~vw~~~~~~~~~~ 318 (762)
.+|.+.++|....-...... ..........|-.+.|. ||...||++..+|.+.+..-+...
T Consensus 175 ~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~---- 250 (1189)
T KOG2041|consen 175 KANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP---- 250 (1189)
T ss_pred hcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC----
Confidence 67788888766432210000 01111112234455553 577899999999999887654331
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC---------eEEEEecCCCceec
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG---------VLVVWQLDTGKKKF 389 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg---------~i~~wd~~~~~~~~ 389 (762)
.++..-.+ -.+..+.|+++|..|+.++.+. .|.++..-..-.-.
T Consensus 251 -------------------------~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gt 303 (1189)
T KOG2041|consen 251 -------------------------EPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGT 303 (1189)
T ss_pred -------------------------CCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEE
Confidence 22222222 4578899999999999988652 34555433222234
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc--------eEEEEEccCCCCCCC--------CC---cccCcee
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM--------EIIRSISGIKLPCPL--------PE---EYKGLCR 450 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~--------~~---~~~~~v~ 450 (762)
+...+..|+.++|-..|-.++.+ .|+.|++=+++.. ..+...+....+... .. ..-....
T Consensus 304 lkvpg~~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~ 382 (1189)
T KOG2041|consen 304 LKVPGSCITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFE 382 (1189)
T ss_pred EecCCceeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhccee
Confidence 44456678999998777777665 4556555444431 111111111111000 00 0001224
Q ss_pred eEEEeCCCCEEEEeecCceEEEEEc-CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 451 DIAFNHDGGLVALRAENYCIHFYSL-LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~dg~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
++++..+.-.|+.-..++.+.-++. ++...+..+..+..--.+.+..-..|.-.-..-++.+++.++. .
T Consensus 383 ~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~----------e 452 (1189)
T KOG2041|consen 383 NMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASE----------E 452 (1189)
T ss_pred ehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEecc----------c
Confidence 5555555555555556666655522 2222233333322211111111112222222335666676652 3
Q ss_pred EEEEEEecCCCceeE-------------------------E--EEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 530 CLKFWVSGTQNKEFT-------------------------L--STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~-------------------------~--~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.+.+|.....+.... + .+....|. ..+|..++.+ .++|..+-..|.|.-|
T Consensus 453 ~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~-~DpICAl~~s--dk~l~vareSG~I~ry 529 (1189)
T KOG2041|consen 453 RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGS-KDPICALCIS--DKFLMVARESGGIYRY 529 (1189)
T ss_pred cEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccC-CCcceeeeec--ceEEEEEeccCceEEE
Confidence 567776653322110 0 01112344 5677777775 5688888899999999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC---CCeEEE-EeccccCceeEEEE
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD---RNVLVA-VIGETLTPIMNMSF 657 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~---~~~~~~-~l~~~~~~v~~~~~ 657 (762)
.+.+.......+ -...+..++..-+...+|.-. -|.+.+.|+. +|..+. .++.....|+++.|
T Consensus 530 Sl~nv~l~n~y~------------~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~W 597 (1189)
T KOG2041|consen 530 SLNNVVLTNSYP------------VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEW 597 (1189)
T ss_pred Eecceeeeeccc------------cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhh
Confidence 998876655442 356788999988888888877 7888888776 344443 44445667999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 658 VGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
..|...|+.--+... ++|++-...+.
T Consensus 598 a~dNp~llAlmeKtr--myifrgndpeE 623 (1189)
T KOG2041|consen 598 AQDNPNLLALMEKTR--MYIFRGNDPEE 623 (1189)
T ss_pred ccCCchHHhhhhhce--EEEecCcCccc
Confidence 998877666555444 78886555433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.2e-11 Score=120.51 Aligned_cols=289 Identities=15% Similarity=0.168 Sum_probs=181.1
Q ss_pred ccccEEEEec--CCccccceeeeccCCCceEEEECCCCCEEEEE-e----CCeEEEEEccCc--hhhhheeeeeeeccCc
Q 040987 212 MNGRICKCNL--TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-K----QRKLLIWKVPDV--EAERVVMRKITLHHTK 282 (762)
Q Consensus 212 ~d~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~----~~~i~iwd~~~~--~~~~~~~~~~~~~~~~ 282 (762)
..+.|..|++ ++++...............++++|++++|.+. . ++.|..|++... +.. .+.. ......
T Consensus 11 ~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~--~~~~-~~~~g~ 87 (345)
T PF10282_consen 11 KGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLT--LLNS-VPSGGS 87 (345)
T ss_dssp SSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEE--EEEE-EEESSS
T ss_pred CCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeE--Eeee-eccCCC
Confidence 4478888877 55555433334466778889999999999754 2 479999998875 322 2222 222445
Q ss_pred CeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++++|++++|+++.. +|.|.++++.....+........... .-...-+.......++.|
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g----------------~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEG----------------SGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEE----------------EESSTTTTSSTCEEEEEE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCC----------------CCCcccccccccceeEEE
Confidence 6678999999999998864 89999999976433221100000000 000000011234678999
Q ss_pred ecCCCEEEEEec-CCeEEEEecCCCc--ee----ccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcC--CceE--E
Q 040987 362 SSDGAYLYSGGK-EGVLVVWQLDTGK--KK----FLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMP--SMEI--I 429 (762)
Q Consensus 362 s~~g~~l~s~~~-dg~i~~wd~~~~~--~~----~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~--~~~~--~ 429 (762)
+|||+++++... ...|.+|+++... .. ...........++|+|+++++++..+ ++.|.++++. ++.. +
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 999999888653 2579999987765 31 13355667899999999999887765 6789999988 4432 2
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
..+...... .........++++|||++|.++. ..+.|.+|++. ....+..+...... ....+.++++
T Consensus 232 ~~~~~~~~~----~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~-------G~~Pr~~~~s 300 (345)
T PF10282_consen 232 QTISTLPEG----FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG-------GKFPRHFAFS 300 (345)
T ss_dssp EEEESCETT----SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES-------SSSEEEEEE-
T ss_pred EEeeecccc----ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC-------CCCccEEEEe
Confidence 333221110 00112578899999999988765 45789999994 32333333322110 2337899999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|+|++|+++.. .++.|.+|+++.
T Consensus 301 ~~g~~l~Va~~--------~s~~v~vf~~d~ 323 (345)
T PF10282_consen 301 PDGRYLYVANQ--------DSNTVSVFDIDP 323 (345)
T ss_dssp TTSSEEEEEET--------TTTEEEEEEEET
T ss_pred CCCCEEEEEec--------CCCeEEEEEEeC
Confidence 99999999875 667899998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-11 Score=110.93 Aligned_cols=285 Identities=13% Similarity=0.155 Sum_probs=188.9
Q ss_pred CccccEEEEecCC--ccccceeeeccCCCceEEEECCCCCEEEEE----eCCeEEEEEccC--chhhhheeeeeeeccCc
Q 040987 211 TMNGRICKCNLTE--SRLAGGVTLAEMKEPQVITISSSGKYFGIR----KQRKLLIWKVPD--VEAERVVMRKITLHHTK 282 (762)
Q Consensus 211 ~~d~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~spdg~~la~~----~~~~i~iwd~~~--~~~~~~~~~~~~~~~~~ 282 (762)
..+..|.+|++.+ |+........+.+.++-++|+|++++|-++ .++.|..|.++. +... .+.+. .....
T Consensus 13 ~~s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt--~ln~~-~~~g~ 89 (346)
T COG2706 13 RESQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLT--FLNRQ-TLPGS 89 (346)
T ss_pred cCCCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEE--Eeecc-ccCCC
Confidence 3467899998873 444434566788899999999999988643 368888888875 4432 11111 12233
Q ss_pred CeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc------
Q 040987 283 KLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE------ 355 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~------ 355 (762)
+-+.++++++|++|+++.. .|.|.++.+.....+... .....|.+.
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~---------------------------v~~~~h~g~~p~~rQ 142 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV---------------------------VQVVKHTGSGPHERQ 142 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccc---------------------------eeeeecCCCCCCccc
Confidence 4488999999999998865 588999988653222111 111112222
Q ss_pred ----eeEEEEecCCCEEEEEecC-CeEEEEecCCCceec----cCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCC
Q 040987 356 ----VSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKKF----LPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPS 425 (762)
Q Consensus 356 ----v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~ 425 (762)
+....++|++++|++.+-. -.|.+|+++.|.... ....+.....|.|+|++++.++.++ +++|.+|..+.
T Consensus 143 ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 143 ESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred cCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 6788999999999987642 469999999887632 2345567889999999999888766 88999999887
Q ss_pred c-eEEEEEccCCC-CCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 426 M-EIIRSISGIKL-PCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 ~-~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
. ..+..++.+.. +.. .........+.+++||++|.++.+ ...|.+|.+........+......+ ....+
T Consensus 223 ~~g~~~~lQ~i~tlP~d--F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te------g~~PR 294 (346)
T COG2706 223 AVGKFEELQTIDTLPED--FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE------GQFPR 294 (346)
T ss_pred CCceEEEeeeeccCccc--cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC------CcCCc
Confidence 3 33333332221 111 111246678999999999887643 2478888876553322222211111 33468
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.+.|+|+|++|+++.. ....|.+|..+....
T Consensus 295 ~F~i~~~g~~Liaa~q--------~sd~i~vf~~d~~TG 325 (346)
T COG2706 295 DFNINPSGRFLIAANQ--------KSDNITVFERDKETG 325 (346)
T ss_pred cceeCCCCCEEEEEcc--------CCCcEEEEEEcCCCc
Confidence 8999999999999985 445689988775443
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.6e-13 Score=123.17 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=182.3
Q ss_pred ccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----EEeeecCCc------------cceeEEEEeCCCCcccceee
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----QISSLEGHK------------APVTTVIVVPASTPATKILS 134 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----~~~~l~~h~------------~~V~~v~~s~~~~~~~~l~~ 134 (762)
..+.+++.|..+|.+||+|. +|.|.++.-+... ....++.|. ..|..+.|.++++ ..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n----~a- 99 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN----LA- 99 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC----cc-
Confidence 33444599999999999999 7999999754322 334455553 4589999999984 32
Q ss_pred eEEeeecCCeEEEEeCCCcceEEE---EEec---cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKT---IDVK---FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~---~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
.+.....|.+|++|-+........ +... ..+.++..|-
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~------------------------------------ 143 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPV------------------------------------ 143 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeecee------------------------------------
Confidence 444567799999999876543220 0000 0111111110
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee----eeccCcCe
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI----TLHHTKKL 284 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~~~v 284 (762)
.+..+-.+. ..+.+.....|+-.|.++.++.|++.+.+++|=.|.+|++.-..... .+..+ ...-..-|
T Consensus 144 ~~~~~~~ve------a~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sF-nIVDIKP~nmEeLteVI 216 (433)
T KOG1354|consen 144 EGRHDLEVE------ASPRRVYANAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSF-NIVDIKPANMEELTEVI 216 (433)
T ss_pred eccccceee------eeeeeeccccceeEeeeeeecCccceEeeccceeeeeccccccCCce-eEEEccccCHHHHHHHH
Confidence 001111110 11222345568889999999999999999999999999987433210 00011 11123468
Q ss_pred EEEEEcCC-CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 285 TVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 285 ~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++..|+|. .+.++..+..|+|++-|++.......+..... ...++....-+.+--..|..+.|++
T Consensus 217 TsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfE--------------epedp~~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 217 TSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFE--------------EPEDPSSRSFFSEIISSISDVKFSH 282 (433)
T ss_pred hhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhc--------------cccCCcchhhHHHHhhhhhceEEcc
Confidence 88999994 56778888999999999974422111110000 0111222233444556789999999
Q ss_pred CCCEEEEEecCCeEEEEecCC-Cce-eccCCC------------CC---CeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 364 DGAYLYSGGKEGVLVVWQLDT-GKK-KFLPRI------------GS---PLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~-~~~-~~~~~~------------~~---~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+|+++++-+. -+|++||+.. .++ ...+-| .. .-..++|+.++.++++|+..+..++|+...|
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999988654 6899999843 222 112111 11 2345889999999999999999999997665
Q ss_pred e
Q 040987 427 E 427 (762)
Q Consensus 427 ~ 427 (762)
.
T Consensus 362 s 362 (433)
T KOG1354|consen 362 S 362 (433)
T ss_pred c
Confidence 4
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-11 Score=114.09 Aligned_cols=287 Identities=18% Similarity=0.181 Sum_probs=185.9
Q ss_pred CCeEEEEecCCCc--e--eccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCC--ceEEEEEccCCCCCCCCCc
Q 040987 374 EGVLVVWQLDTGK--K--KFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPS--MEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 374 dg~i~~wd~~~~~--~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~ 444 (762)
++-|++|++.+.. . ..+.......+-++|+|+++.|+++..+ |.|..|.++. |++... .....+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~------ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLP------ 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccC------
Confidence 4679999988433 2 3445566778899999999999887654 6777777764 443222 111111
Q ss_pred ccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeE-Eeecc-cccCCCCc-ceeEEEEEEecCCCeEEEEeeec
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEV-QVCER-NHQPGDDV-TVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~-~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
......+++++++++++++. ..|.|.++-+.....+... ..... +..++... ..-+....+.|++++|++.+-
T Consensus 88 -g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-- 164 (346)
T COG2706 88 -GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-- 164 (346)
T ss_pred -CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec--
Confidence 02337899999999998886 4589999999764333222 11110 00011111 223788899999999999875
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccc-cccccccCCce
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDE-LQQKDLQSSGW 598 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~-~~~~~~~~~~~ 598 (762)
+...|.+|++..+.....-.... .. ...-+-+.|+|++++....+ -+++|.+|.++.. .....++ ..
T Consensus 165 ------G~Dri~~y~~~dg~L~~~~~~~v--~~-G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ--~i 233 (346)
T COG2706 165 ------GTDRIFLYDLDDGKLTPADPAEV--KP-GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ--TI 233 (346)
T ss_pred ------CCceEEEEEcccCcccccccccc--CC-CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee--ee
Confidence 44589999999776543322221 22 45678899999999877765 4889999999874 2222111 00
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC--CeEE--EEeccccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR--NVLV--AVIGETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~--~~~~--~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
.+....-....+..++.++|||++|.++. ...|.+|.+.. +++. .....+...-+.+.|+++|++|+.++.|+.
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 01111112345677899999999999986 56888887654 3322 122223333578999999999999998885
Q ss_pred CeEEEEECCC
Q 040987 673 PQLSVWNMSK 682 (762)
Q Consensus 673 ~~v~vwd~~~ 682 (762)
.|.+|.++.
T Consensus 314 -~i~vf~~d~ 322 (346)
T COG2706 314 -NITVFERDK 322 (346)
T ss_pred -cEEEEEEcC
Confidence 588886653
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.4e-15 Score=141.66 Aligned_cols=204 Identities=12% Similarity=0.180 Sum_probs=176.6
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
....+.++.+|++|+.++..|.|..+|..+.....++.. ...|.++.|-.+.+++|++ .
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----------~Etv~Dv~~LHneq~~AVA----------Q 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----------METVRDVTFLHNEQFFAVA----------Q 189 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----------hhhhhhhhhhcchHHHHhh----------h
Confidence 446789999999999999999999999999988887766 4458999999999999999 5
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...++|||-... .+..+.. ...|..+.|-|..-+|++++..|.++--|+.+|+.+..+. ..
T Consensus 190 K~y~yvYD~~Gt-ElHClk~-------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~-----------t~ 250 (545)
T KOG1272|consen 190 KKYVYVYDNNGT-ELHCLKR-------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIR-----------TG 250 (545)
T ss_pred hceEEEecCCCc-EEeehhh-------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHH-----------cc
Confidence 679999997754 3344432 4578899999999999999999999999999999887763 34
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
.+.+..|.-.|-+..+-+|. .|+|.+|.....+++..+-.|.++|.++++.++|++++|+|.|.. ++|||+.+....
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~--~kIWDlR~~~ql 328 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK--VKIWDLRNFYQL 328 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc--eeEeeecccccc
Confidence 67788889899888888897 999999999999999988899999999999999999999999998 999999998877
Q ss_pred eEEEEee
Q 040987 687 WSYLLHV 693 (762)
Q Consensus 687 ~~~~~~~ 693 (762)
.++..+.
T Consensus 329 ~t~~tp~ 335 (545)
T KOG1272|consen 329 HTYRTPH 335 (545)
T ss_pred ceeecCC
Confidence 7766643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-12 Score=134.35 Aligned_cols=232 Identities=16% Similarity=0.097 Sum_probs=147.3
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.+ ..|||||++||+.. + ..|.+||+.+++... +....+.....+|+|||+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~-p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMS-PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccC-ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCC--
Confidence 567778887777777788888887 99999999999886 2 479999998886432 222233445789999995
Q ss_pred cceeeeEEeeecCCe--EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDGT--IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~~--i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++. |.+||+.+++..+ +
T Consensus 275 ----~La~~~~~~g~~~Iy~~dl~tg~~~~-l------------------------------------------------ 301 (448)
T PRK04792 275 ----KLALVLSKDGQPEIYVVDIATKALTR-I------------------------------------------------ 301 (448)
T ss_pred ----EEEEEEeCCCCeEEEEEECCCCCeEE-C------------------------------------------------
Confidence 34445566664 6666766554221 1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--C--CeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--Q--RKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
..+.......+|+|||+.|+... + ..|.++|+.+++.. .+. .....
T Consensus 302 ------------------------t~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-----~Lt-~~g~~ 351 (448)
T PRK04792 302 ------------------------TRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-----RLT-FEGEQ 351 (448)
T ss_pred ------------------------ccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----EEe-cCCCC
Confidence 11122345678999999997543 2 45777788776642 222 12223
Q ss_pred eEEEEEcCCCcEEEEeec-CC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDV-TG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
....+|+|||++|+..+. ++ .|.++|+.+++.. .+... .......
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-------------------------------~lt~~-~~d~~ps 399 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-------------------------------VLTST-RLDESPS 399 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-------------------------------EccCC-CCCCCce
Confidence 445799999999887654 34 4555666554321 11111 1112357
Q ss_pred EecCCCEEEEEecC-C--eEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKE-G--VLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~d-g--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.|+..+.+ + .+++++.+......+....+.+...+|+|
T Consensus 400 ~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 400 VAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 99999988876543 2 47788876555555555555677778876
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-09 Score=119.46 Aligned_cols=441 Identities=11% Similarity=0.074 Sum_probs=240.6
Q ss_pred cCCcceeEEEEecCCC--eEEEEecCCcc-eeee--------ecCcccccCCceeecCCCEEEEEe-CCEEEEE----Ec
Q 040987 38 KPRSRSFIFAVARSSG--LCRTAEYPAVN-SKMI--------RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIF----ST 101 (762)
Q Consensus 38 ~~~~~~~~~a~~~~~g--~i~~~~~~~~~-~~~~--------~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iw----d~ 101 (762)
....+..+++.+.... .|.+....... ...+ ....+.|.+ +.|-+|..-|..+. +|.|.+. |.
T Consensus 30 d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs-~~yl~d~~~l~~~~~~Gdi~~~~~~~~~ 108 (928)
T PF04762_consen 30 DSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVS-FQYLADSESLCIALASGDIILVREDPDP 108 (928)
T ss_pred ecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEE-EEeccCCCcEEEEECCceEEEEEccCCC
Confidence 3333566777775544 34444333221 1111 123466776 88999988777777 7999999 54
Q ss_pred ccc--eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcc
Q 040987 102 STG--LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQ 179 (762)
Q Consensus 102 ~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 179 (762)
.+. +++..+ ..+|.|++||||+ .+|+..+.++++.+-+ .+.+.+.....+..-.
T Consensus 109 ~~~~~E~VG~v---d~GI~a~~WSPD~-------Ella~vT~~~~l~~mt-~~fd~i~E~~l~~~~~------------- 164 (928)
T PF04762_consen 109 DEDEIEIVGSV---DSGILAASWSPDE-------ELLALVTGEGNLLLMT-RDFDPISEVPLDSDDF------------- 164 (928)
T ss_pred CCceeEEEEEE---cCcEEEEEECCCc-------CEEEEEeCCCEEEEEe-ccceEEEEeecCcccc-------------
Confidence 433 344444 4789999999999 4666677678887764 4455554443321000
Q ss_pred cCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE--EEecCCccccceeeeccCCCceEEEECCCCCEEEEEe---
Q 040987 180 SDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC--KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--- 254 (762)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~--iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--- 254 (762)
......-+.++....- .-|+..+... +-+....+.-..... ....-..++|-.||+|+|++.
T Consensus 165 ----~~~~~VsVGWGkKeTQ--------F~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~ 231 (928)
T PF04762_consen 165 ----GESKHVSVGWGKKETQ--------FHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEP 231 (928)
T ss_pred ----CCCceeeeccCcccCc--------cCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEc
Confidence 0000111111111000 1111111100 011111100011122 444567899999999998541
Q ss_pred ----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec---CCeEEEEeccCCceeecccccccccc
Q 040987 255 ----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV---TGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 255 ----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
...++||+-+ |+.. .....-.+--.+++|-|.|+++|+... ...|.+|.-.+-+.-.
T Consensus 232 ~~~~~R~iRVy~Re-G~L~-----stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge---------- 295 (928)
T PF04762_consen 232 ETGSRRVIRVYSRE-GELQ-----STSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE---------- 295 (928)
T ss_pred CCCceeEEEEECCC-ceEE-----eccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------
Confidence 2578999877 3322 222222333457899999999998754 3456777644332111
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--ec--cCCCCCCeEEEEeC
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--KF--LPRIGSPLLYFTES 403 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~~--~~~~~~~v~~~~~s 403 (762)
..-.+......|..+.|++|+..|+..-.|. |.+|-..+... +. .......+..+.|+
T Consensus 296 -----------------F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd 357 (928)
T PF04762_consen 296 -----------------FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD 357 (928)
T ss_pred -----------------EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence 1111223456789999999999999877654 99998887654 11 12223345559999
Q ss_pred CCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee
Q 040987 404 PDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 404 ~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
|.. ..|.+.+.++.+..++..-. ...+. ..+|+..-++..-+...+.+-.++..-...
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~----v~~s~-----------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPP 416 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWD----VSRSP-----------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPP 416 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEE----EEecC-----------------CCCccCceEEEEEeCCeEEEecccccCCCc
Confidence 954 45777767677777665411 00000 011212222222233446665555433222
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--------eEEEEE-----e
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--------FTLSTI-----V 549 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~~~-----~ 549 (762)
.+....-.. ...|.+++|++++..+++.. .++.+.+|........ ..+... .
T Consensus 417 PMs~~~l~~------~~~v~~vaf~~~~~~~avl~---------~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (928)
T PF04762_consen 417 PMSSYELEL------PSPVNDVAFSPSNSRFAVLT---------SDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD 481 (928)
T ss_pred hHhceEEcC------CCCcEEEEEeCCCCeEEEEE---------CCCCEEEEEecCCCcccccCcchhhhcccccccccc
Confidence 211111111 56799999999998888877 7888999986543321 011000 0
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccc
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDE 587 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~ 587 (762)
.... ...+..++|..+...++....+ ..+.++++...
T Consensus 482 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 482 SELP-LGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred cccc-cccEEEEEEeCCCEEEEEEecCcccceEEEEEeccC
Confidence 0111 3467888998888777766654 56778877433
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=137.01 Aligned_cols=217 Identities=16% Similarity=0.148 Sum_probs=145.5
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
...|.++|........+..+...+.. ++|||||++||++. + ..|++||+++++... +..+.+.+.+++|+|||+
T Consensus 169 ~~~l~~~d~~g~~~~~l~~~~~~~~~-p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADYDGANPQTITRSREPILS-PAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcCCCCCCEEeecCCCceec-ccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCC
Confidence 34688888887777777778777886 99999999999987 2 589999999886543 334556677899999995
Q ss_pred cccceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 128 PATKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
.++++.+.++ .|.+||+.+++... +
T Consensus 247 ------~l~~~~~~~~~~~i~~~d~~~~~~~~-l---------------------------------------------- 273 (417)
T TIGR02800 247 ------KLAVSLSKDGNPDIYVMDLDGKQLTR-L---------------------------------------------- 273 (417)
T ss_pred ------EEEEEECCCCCccEEEEECCCCCEEE-C----------------------------------------------
Confidence 3444555444 47777776654321 1
Q ss_pred CCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeeccC
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..+........|+|||+.|+...+ ..|+++++.+++.. ....+.
T Consensus 274 --------------------------~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~------~l~~~~ 321 (417)
T TIGR02800 274 --------------------------TNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR------RLTFRG 321 (417)
T ss_pred --------------------------CCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE------EeecCC
Confidence 111122335689999999875432 36888888776532 233345
Q ss_pred cCeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
..+..+.|+|+|++++.++.++ .|.+||+.++... .+... .....
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-------------------------------~l~~~-~~~~~ 369 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-------------------------------VLTDT-GLDES 369 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-------------------------------EccCC-CCCCC
Confidence 5677889999999999887765 7888888654221 11111 12334
Q ss_pred EEEecCCCEEEEEecCC---eEEEEecCCCce
Q 040987 359 LIFSSDGAYLYSGGKEG---VLVVWQLDTGKK 387 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg---~i~~wd~~~~~~ 387 (762)
..|+|||+.|+..+.++ .+++.+......
T Consensus 370 p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 370 PSFAPNGRMILYATTRGGRGVLGLVSTDGRFR 401 (417)
T ss_pred ceECCCCCEEEEEEeCCCcEEEEEEECCCcee
Confidence 68999999988877653 466666554333
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-12 Score=136.63 Aligned_cols=235 Identities=13% Similarity=0.108 Sum_probs=154.2
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.++|.+......+......+....|+|||+.|+..+.+ ..|+++|+.+++.... .... +.....
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~~~----------g~~~~~ 267 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TSFP----------GINGAP 267 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cCCC----------CCcCCe
Confidence 6788888777666666777789999999999999876543 2588999988765332 2211 233568
Q ss_pred EEeCCCCEEEEe-ecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALR-AENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
+|+|||+.|+.. ..++ .|+++|+.+++.. .+... .......+|+|||+.|+..+.. +...
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~----------~~~~~~p~wSpDG~~I~f~s~~------~g~~ 330 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRH----------RAIDTEPSWHPDGKSLIFTSER------GGKP 330 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccC----------CCCccceEECCCCCEEEEEECC------CCCc
Confidence 999999988764 4455 4888888776432 22111 2235667999999998877621 0234
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCceeeeeeccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.|.++|+.+++... +. ..++ .....+|+|||++|+..+.+ + .|.++|+.++.......
T Consensus 331 ~Iy~~dl~~g~~~~-Lt---~~g~---~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~------------ 391 (448)
T PRK04792 331 QIYRVNLASGKVSR-LT---FEGE---QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTS------------ 391 (448)
T ss_pred eEEEEECCCCCEEE-Ee---cCCC---CCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccC------------
Confidence 67777877665322 21 1222 33457899999998887653 3 35567777665432211
Q ss_pred CCCCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||+.|+... ++ .+++++.+ |+....+..+.+.+...+|+|
T Consensus 392 -~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 -TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 11122458999999988765 33 47788874 666666766666778888887
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=136.06 Aligned_cols=232 Identities=14% Similarity=0.140 Sum_probs=151.9
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.++|........+..+...+.. ++|||||++||+.+ + ..|.+||+.+++... +....+.+...+|+|||+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~-p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILS-PRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECCCCCCceEEecCCCceee-eeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCC--
Confidence 477788887777778788888886 99999999999887 2 479999998886533 333344566789999995
Q ss_pred cceeeeEEeeecCC--eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 130 TKILSYCWTASLDG--TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 130 ~~l~~~l~s~s~d~--~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++++.+.++ .|.+||+.+++... +.
T Consensus 256 ----~la~~~~~~g~~~Iy~~d~~~~~~~~-lt----------------------------------------------- 283 (430)
T PRK00178 256 ----KLAFVLSKDGNPEIYVMDLASRQLSR-VT----------------------------------------------- 283 (430)
T ss_pred ----EEEEEEccCCCceEEEEECCCCCeEE-cc-----------------------------------------------
Confidence 3334555554 57777877665321 11
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+........|+|||+.|+... ...|+++++.+++.. .... ....
T Consensus 284 -------------------------~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-----~lt~-~~~~ 332 (430)
T PRK00178 284 -------------------------NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-----RVTF-VGNY 332 (430)
T ss_pred -------------------------cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-----Eeec-CCCC
Confidence 1122234568999999987543 236778888777643 2221 1223
Q ss_pred eEEEEEcCCCcEEEEeecC-C--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVT-G--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d-g--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....|+|||++|+..+.+ + .|.+||+.+++... +. +........
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-------------------------------lt-~~~~~~~p~ 380 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-------------------------------LT-DTSLDESPS 380 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-------------------------------cc-CCCCCCCce
Confidence 4467899999999877643 3 57888887654211 11 111122458
Q ss_pred EecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 361 FSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 361 ~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|+|||+.++..+.+ ..++++++.......+....+.+...+|+|
T Consensus 381 ~spdg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 381 VAPNGTMLIYATRQQGRGVLMLVSINGRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred ECCCCCEEEEEEecCCceEEEEEECCCCceEECcCCCCCcCCCccCC
Confidence 99999999877654 357788886655545554455667777776
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-09 Score=119.99 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=187.9
Q ss_pred cCcCeEEEEEcCCCcEEEEeec------CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDV------TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
+.+.-..++|-.||+++|+.+- -..++||+-++. ... +-..-.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~-L~s------------------------------tSE~v~ 256 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGE-LQS------------------------------TSEPVD 256 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCce-EEe------------------------------ccccCC
Confidence 4446678999999999998754 257999986522 111 111111
Q ss_pred cceeEEEEecCCCEEEEEec---CCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+--.+++|-|.|++|++... ...|.+|.-..-+. .........+..+.|++|+..|++...+. |.+|-..+.
T Consensus 257 gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 257 GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 22346899999999998764 34577776443222 11224456899999999999999976554 999998874
Q ss_pred e--EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 427 E--IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 427 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
. +.+.+.-... ..+..+.|+|. ...|.+.+.+|.+..++..-. .. .+
T Consensus 336 HWYLKqei~~~~~---------~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-------v~--------------~s 385 (928)
T PF04762_consen 336 HWYLKQEIRFSSS---------ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-------VS--------------RS 385 (928)
T ss_pred EEEEEEEEEccCC---------CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-------EE--------------ec
Confidence 3 2222221110 23445999995 445777777677776665211 00 00
Q ss_pred EEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
-..+| |...+++. +...+++-.++....+..+....+. - ...|.+++|++++..+++-..||.+.+|
T Consensus 386 ~~~~~~D~g~vaVI----------DG~~lllTpf~~a~VPPPMs~~~l~-~-~~~v~~vaf~~~~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 386 PGSSPNDNGTVAVI----------DGNKLLLTPFRRAVVPPPMSSYELE-L-PSPVNDVAFSPSNSRFAVLTSDGSLSIY 453 (928)
T ss_pred CCCCccCceEEEEE----------eCCeEEEecccccCCCchHhceEEc-C-CCCcEEEEEeCCCCeEEEEECCCCEEEE
Confidence 00112 11223333 2346777666655433222111111 1 5689999999999889999999999999
Q ss_pred Eccccccccccc-CCceeeee------ecccCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCCCe---EEEEeccc
Q 040987 583 ICNDELQQKDLQ-SSGWSCHA------VGSYKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDRNV---LVAVIGET 648 (762)
Q Consensus 583 d~~~~~~~~~~~-~~~~~~~~------~~~~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~~~---~~~~l~~~ 648 (762)
...........+ .....+.. ........+..++|..+..+++... + ..+.++++...+ .+.....-
T Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 533 (928)
T PF04762_consen 454 EWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEV 533 (928)
T ss_pred EecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEecc
Confidence 865543221000 00000000 0112345678899988887777665 3 578888875332 22222223
Q ss_pred cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 649 LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 649 ~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.+.+..+...++...++.-..||. +...+..
T Consensus 534 ~~~~~~~~~~~~~~~~~~q~~~G~--v~~~~~~ 564 (928)
T PF04762_consen 534 DGVVLIISSSPDSGSLYIQTNDGK--VFQLSSD 564 (928)
T ss_pred CceEEEEeeCCCCcEEEEEECCCE--EEEeecC
Confidence 344555555555544666666765 6644433
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.4e-13 Score=120.17 Aligned_cols=157 Identities=15% Similarity=0.293 Sum_probs=110.8
Q ss_pred eeEEEeCCCCEEEEeec----------CceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 450 RDIAFNHDGGLVALRAE----------NYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~----------dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+.|+|+|.+|++-.. -+...+|.++.. .....+.... ..+|.+++|+|+|+.+|+...
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~---------~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK---------EGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC---------CCceEEEEECcCCCEEEEEEc
Confidence 56889999988776544 134455555322 2222222211 346999999999999877642
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccC
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~ 595 (762)
. .+..|.+||++ .+.+..+ + ...++.+.|+|+|++|++++.+ |.+.+||.++.+.+...+
T Consensus 80 ~-------~~~~v~lyd~~-~~~i~~~-------~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~- 142 (194)
T PF08662_consen 80 S-------MPAKVTLYDVK-GKKIFSF-------G-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE- 142 (194)
T ss_pred c-------CCcccEEEcCc-ccEeEee-------c-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence 1 45689999997 4444433 2 4577889999999999998754 679999999777665552
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-------CCeEEEEeCCCCeEEEEe
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-------ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-------d~~i~iwd~~~~~~~~~l 645 (762)
...++.++|||||++++++. |..++||+.. |+++...
T Consensus 143 ------------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 143 ------------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ------------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 34578999999999999863 6789999986 6655443
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-12 Score=131.05 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=143.1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCc---eEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEP---QVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v---~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
+.++.++.+.+||...+.............. .-+.++++.-+++++ .-+.|.+|+....+.. ..+.+|.+.
T Consensus 103 ~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-----~~l~GHeG~ 177 (967)
T KOG0974|consen 103 ALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-----IRLKGHEGS 177 (967)
T ss_pred EEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-----ceecccCCc
Confidence 3345778888999888877744443333322 233456777778765 6799999999833322 357899999
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
|.++.|+-||+++++.+.|.++++|++++.+... ...-+|+.+|+.++|.|
T Consensus 178 iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-----------------------------~~~fgHsaRvw~~~~~~ 228 (967)
T KOG0974|consen 178 IFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-----------------------------CTGFGHSARVWACCFLP 228 (967)
T ss_pred eEEEEEccCCcEEEEEecCcceeeeecccccccC-----------------------------cccccccceeEEEEecc
Confidence 9999999999999999999999999998775332 35567999999999998
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+ ++++++.|.+.++|+....+......| ...+..++..++...+++++.|+.+++|++..
T Consensus 229 n--~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 229 N--RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred c--eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8 899999999999997776555444343 45799999999999999999999999999875
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-12 Score=129.81 Aligned_cols=240 Identities=13% Similarity=-0.003 Sum_probs=154.1
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE---EEecCC--cEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS---ISCADN--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
..|.+.|.+.+....+...........|||||+.++ +...++ .|++.++.+++..+... .. +..
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~-~~----------g~~ 233 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA-LQ----------GNQ 233 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-CC----------CCc
Confidence 468888988887777766677778899999997532 333333 58888888765443322 22 344
Q ss_pred eeEEEeCCCCEEEEeec-----CceEEEEEcCCCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 450 RDIAFNHDGGLVALRAE-----NYCIHFYSLLDDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~-----dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
...+|+|||+.|+..+. +..+..|++..+. ....+.... .......+|+|||+.|+..+.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~---------~~~~~~p~wSPDG~~Laf~s~---- 300 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEA---------FGTQGNPSFSPDGTRLVFVSN---- 300 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCC---------CCCcCCeEECCCCCEEEEEEC----
Confidence 56899999999887653 2234446766431 112221110 122356799999999888762
Q ss_pred cCCCcee--EEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCC
Q 040987 523 EGIGSLV--CLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 523 ~~~~~d~--~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~ 596 (762)
.++ .|.++++... .....+ ..+ ...+....|||||+.|+..+.+ ..|.+||+.+++......
T Consensus 301 ----~~g~~~ly~~~~~~~g~~~~~l-----t~~-~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-- 368 (428)
T PRK01029 301 ----KDGRPRIYIMQIDPEGQSPRLL-----TKK-YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-- 368 (428)
T ss_pred ----CCCCceEEEEECcccccceEEe-----ccC-CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC--
Confidence 233 4555555422 222222 223 4466789999999999887653 368999998876543321
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
....+..+.|+|||++|+... ...|+++|+.+++...... ..+.+...+|+|-.
T Consensus 369 ----------~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~-~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 369 ----------SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI-GSGEKRFPSWGAFP 426 (428)
T ss_pred ----------CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCcccCceecCCC
Confidence 123556799999999887543 4679999999887654443 44557788898843
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-10 Score=113.33 Aligned_cols=269 Identities=14% Similarity=0.105 Sum_probs=174.7
Q ss_pred CeEEEEecCCcceee-eecCcccccCCceeecCCCEEEEEeC-----------CEEEEEEcccceEEeeecCC-------
Q 040987 53 GLCRTAEYPAVNSKM-IRGGRSYVSSPPAFSNDVKRLLVCTS-----------NTVSIFSTSTGLQISSLEGH------- 113 (762)
Q Consensus 53 g~i~~~~~~~~~~~~-~~~h~~~v~~~~~~s~dg~~la~~~~-----------~~i~iwd~~~~~~~~~l~~h------- 113 (762)
+.|.+.|..+.+.+. +.....+ .. + +||||+.|..+.. ..|.|||+++++.+.++.--
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P-~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP-NP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC-ce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 899999999977764 3333222 22 4 9999998877654 79999999999999888732
Q ss_pred ccceeEEEEeCCCCcccceeeeEEee--ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEE
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTA--SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYL 191 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~--s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (762)
...-..++++||| ++|+.. +.+..|.|.|+.+++.+.++....... .|.
T Consensus 104 ~~~~~~~~ls~dg-------k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~----------------------vy~ 154 (352)
T TIGR02658 104 GTYPWMTSLTPDN-------KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH----------------------IFP 154 (352)
T ss_pred cCccceEEECCCC-------CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE----------------------EEE
Confidence 2234478999999 455544 447999999999999998876432100 000
Q ss_pred EeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE--EeCCeEEEEEccCchhh
Q 040987 192 SVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI--RKQRKLLIWKVPDVEAE 269 (762)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~--~~~~~i~iwd~~~~~~~ 269 (762)
.+.-..+.++.||.++.. ..+|....-..
T Consensus 155 -------------------------------------------t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~------ 185 (352)
T TIGR02658 155 -------------------------------------------TANDTFFMHCRDGSLAKVGYGTKGNPKIKPT------ 185 (352)
T ss_pred -------------------------------------------ecCCccEEEeecCceEEEEecCCCceEEeee------
Confidence 111112244456655542 23344221110
Q ss_pred hheeeeeeeccCcCeE-EEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 270 RVVMRKITLHHTKKLT-VLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 270 ~~~~~~~~~~~~~~v~-~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.++.....++. .-.|++ +|+++.+... |.|.+.|+.+....... ...
T Consensus 186 -----~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~-------------------------~~~ 234 (352)
T TIGR02658 186 -----EVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLP-------------------------AIE 234 (352)
T ss_pred -----eeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecc-------------------------eee
Confidence 11111000110 004566 8887776655 99999997554322100 000
Q ss_pred ee-------eccccceeEEEEecCCCEEEEEe----------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCC-eE
Q 040987 348 TW-------HWHPSEVSVLIFSSDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS-LS 409 (762)
Q Consensus 348 ~~-------~~h~~~v~~~~~s~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 409 (762)
.+ ....+.+.-+++++++++++... ..+.|.++|..+++.......+..+..++++||++ +|
T Consensus 235 ~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 235 AFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLL 314 (352)
T ss_pred eccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEE
Confidence 10 12334445599999999988743 12579999999999987777788999999999999 77
Q ss_pred EEEe-cCCcEEEEEcCCceEEEEEc
Q 040987 410 SISC-ADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 410 ~~~~-~d~~i~i~d~~~~~~~~~~~ 433 (762)
++.. .++.|.++|..+++.++.+.
T Consensus 315 yvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEeCCCCCcEEEEECcCCeEEeeec
Confidence 7666 47889999999999998873
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5e-12 Score=133.15 Aligned_cols=235 Identities=13% Similarity=0.085 Sum_probs=155.8
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.++|.+.+....+..+...+....|+|||+.|+..+.+ ..|.+|++.+++.... .... +.....
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l-~~~~----------g~~~~~ 248 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI-TNFE----------GLNGAP 248 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc-cCCC----------CCcCCe
Confidence 5888888877666666777788999999999999876543 3689999988765432 2222 344578
Q ss_pred EEeCCCCEEEEe-ecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALR-AENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
.|+|||+.|+.. ..+| .|+++|+.++... .+.. + ........|+|||+.|+..+.. .+..
T Consensus 249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~----~------~~~~~~~~~spDg~~i~f~s~~------~g~~ 311 (430)
T PRK00178 249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN----H------PAIDTEPFWGKDGRTLYFTSDR------GGKP 311 (430)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc----C------CCCcCCeEECCCCCEEEEEECC------CCCc
Confidence 999999988754 3344 6888899876532 2211 1 2234567899999988877621 0234
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCceeeeeeccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.|+++++.+++.. .+. ..+ .......|+|||+.|+..+.+ + .|.+||+.++.......
T Consensus 312 ~iy~~d~~~g~~~-~lt---~~~---~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~------------ 372 (430)
T PRK00178 312 QIYKVNVNGGRAE-RVT---FVG---NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD------------ 372 (430)
T ss_pred eEEEEECCCCCEE-Eee---cCC---CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC------------
Confidence 6888888776532 221 112 233457899999999887754 3 47888988765433221
Q ss_pred CCCCeEEEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
........|+|||++++..+ + ..++++++..+ ....+..+.+.+...+|+|
T Consensus 373 -~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 373 -TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred -CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCCCCcCCCccCC
Confidence 11222568999999998775 2 45777888643 4445555556677888887
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=132.25 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=162.2
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCC--CCCeEEEEecCCcEEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESP--DPSLSSISCADNQVHLL 421 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~i~ 421 (762)
.+.+.||++.|.++.|+.||.+|++|+.|-.+.|||.-..+... -.+|...|.++.|-| +.+.+++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 46789999999999999999999999999999999998777653 467888999999988 45788889999999999
Q ss_pred EcCCc----------eEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 422 KMPSM----------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 422 d~~~~----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
|+... +....+..|. ..|..++..|++ +.+.++++||+++-||++....-..-..+...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht----------~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~ 192 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHT----------DRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSI 192 (758)
T ss_pred ecccccccccccCccchhhhhhhhh----------hhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHH
Confidence 99852 2223334444 678889999988 78899999999999999864321111000000
Q ss_pred ccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEE-EEcCCCC
Q 040987 491 HQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAV-AFHPNRR 568 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~-~~spd~~ 568 (762)
........-...+++++|.. .+||+|+ .+--.++||.+...+...-........ .....|+ -|+|.+-
T Consensus 193 l~ny~~~lielk~ltisp~rp~~laVGg---------sdpfarLYD~Rr~lks~~s~~~~~~~p-p~~~~cv~yf~p~hl 262 (758)
T KOG1310|consen 193 LVNYNPQLIELKCLTISPSRPYYLAVGG---------SDPFARLYDRRRVLKSFRSDGTMNTCP-PKDCRCVRYFSPGHL 262 (758)
T ss_pred HHHhchhhheeeeeeecCCCCceEEecC---------CCchhhhhhhhhhccCCCCCccccCCC-CcccchhheecCccc
Confidence 00000013457889999965 5778887 788999999643211110000000000 1111122 1222211
Q ss_pred eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-cCCeEEEEeCCCCeEEEE
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-AETVITLWDPDRNVLVAV 644 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~d~~i~iwd~~~~~~~~~ 644 (762)
...+|.+.. ....++-++|+|+|.-|.+. +...|+++|+..++....
T Consensus 263 ----kn~~gn~~~-------------------------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~ 310 (758)
T KOG1310|consen 263 ----KNSQGNLDR-------------------------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTP 310 (758)
T ss_pred ----cCccccccc-------------------------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCcee
Confidence 111111100 01235678999999877666 477899999998765443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.8e-12 Score=129.50 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=149.6
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEE--EEe--C--CEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLL--VCT--S--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la--~~~--~--~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
..|.+.|....+...+..+...... .+|||||+.++ +.+ + ..|.+.++.+|+..+ +....+.....+|||||
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~s-P~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSIT-PTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCccc-ceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCC
Confidence 4678888888777777766666775 99999998633 334 2 579999998776433 33344455678999999
Q ss_pred CcccceeeeEEeeecCC----eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 127 TPATKILSYCWTASLDG----TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~----~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
+ .++++...+| .+.+|++..+..
T Consensus 243 ~------~Laf~s~~~g~~di~~~~~~~~~g~~----------------------------------------------- 269 (428)
T PRK01029 243 K------LLAFISDRYGNPDLFIQSFSLETGAI----------------------------------------------- 269 (428)
T ss_pred C------EEEEEECCCCCcceeEEEeecccCCC-----------------------------------------------
Confidence 5 2333333222 233344433210
Q ss_pred CccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe--CCe--EEEEEccCchhhhheeeeeee
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK--QRK--LLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~--~~~--i~iwd~~~~~~~~~~~~~~~~ 278 (762)
+... .............+|+|||+.|+... ++. |.++++...... . ..+.
T Consensus 270 ---------------------g~~~-~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~---~-~~lt 323 (428)
T PRK01029 270 ---------------------GKPR-RLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS---P-RLLT 323 (428)
T ss_pred ---------------------Ccce-EeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc---e-EEec
Confidence 0000 01111112335679999999988543 454 444455422110 1 2333
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecC---CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVT---GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
.+...+....|||||++|+..+.+ ..|.+||+.+++.. .+......
T Consensus 324 ~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-------------------------------~Lt~~~~~ 372 (428)
T PRK01029 324 KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-------------------------------QLTTSPEN 372 (428)
T ss_pred cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-------------------------------EccCCCCC
Confidence 444567789999999999876543 46899998776432 22222234
Q ss_pred eeEEEEecCCCEEEEEec---CCeEEEEecCCCceeccCCCCCCeEEEEeCCCC
Q 040987 356 VSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
+....|+|||+.|+.... ...|+++|+.+++...+....+.+...+|+|-.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 567899999998876443 357999999988877666656667778888753
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.1e-12 Score=133.21 Aligned_cols=234 Identities=14% Similarity=0.112 Sum_probs=154.2
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
..|.++|........+..+...+....|+|||++|+..... ..|++||+.+++..... .+. +.+..
T Consensus 170 ~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~----------~~~~~ 238 (417)
T TIGR02800 170 YELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFP----------GMNGA 238 (417)
T ss_pred ceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCC----------CCccc
Confidence 46888898766666666667778899999999999987654 47999999887654332 222 34567
Q ss_pred EEEeCCCCEEEEe-ecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce
Q 040987 452 IAFNHDGGLVALR-AEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 452 ~~~s~~~~~l~~~-~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d 528 (762)
++|+|||+.|+.. +.+ ..|++||+.++... .+.. + ........|+|||+.|+..+.+ +..
T Consensus 239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~----~------~~~~~~~~~s~dg~~l~~~s~~------~g~ 301 (417)
T TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTN----G------PGIDTEPSWSPDGKSIAFTSDR------GGS 301 (417)
T ss_pred eEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCC----C------CCCCCCEEECCCCCEEEEEECC------CCC
Confidence 8999999987754 333 35888998876432 2111 1 1223456899999998877521 023
Q ss_pred eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---cEEEEEcccccccccccCCceeeeeecc
Q 040987 529 VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---DFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 529 ~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
..|.++|+.+++.. .+ ..+ ......+.|+|||++++.++.++ .|.+||+.++.......
T Consensus 302 ~~iy~~d~~~~~~~-~l-----~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~----------- 363 (417)
T TIGR02800 302 PQIYMMDADGGEVR-RL-----TFR-GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTD----------- 363 (417)
T ss_pred ceEEEEECCCCCEE-Ee-----ecC-CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccC-----------
Confidence 47888888766532 22 123 44667889999999999988775 78889987754322211
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
........|+|||++|+..+ + ..+++.+.. ++....+..+.+.+..++|
T Consensus 364 --~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 364 --TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLPLGNGDVREPAW 416 (417)
T ss_pred --CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECCCCCCCcCCCCC
Confidence 12234568999999988875 2 346666655 4445555544445555555
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=120.02 Aligned_cols=253 Identities=13% Similarity=0.141 Sum_probs=177.2
Q ss_pred ccccEEEEecCCccccce-----eeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEE
Q 040987 212 MNGRICKCNLTESRLAGG-----VTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTV 286 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~-----~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 286 (762)
.+..+.......+.+... ......+.|..++. .||.++++-.+|.+.+|....+.....++... ....++..
T Consensus 77 ~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~l--a~g~g~~~ 153 (412)
T KOG3881|consen 77 ADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKL--ATGPGLYD 153 (412)
T ss_pred cCcccccccccCCccccccccccccccccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceee--ecCCceee
Confidence 444555555555444422 12223444544444 36777778899999999998554221122122 22356777
Q ss_pred EEEcCCCc-EEEEeecC--CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPTQR-IVAAGDVT--GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~~~-~l~~~~~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.-++... .+|+|+.. ..+.+||++..+.+-...+..+... -+. -.-.++++.|.+
T Consensus 154 ~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L-----------------~Lr----VPvW~tdi~Fl~ 212 (412)
T KOG3881|consen 154 VRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL-----------------GLR----VPVWITDIRFLE 212 (412)
T ss_pred eccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc-----------------cce----eeeeeccceecC
Confidence 77777555 55668888 8899999987755543333222110 000 112457788988
Q ss_pred C--CCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE-EccCCCC
Q 040987 364 D--GAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKLP 438 (762)
Q Consensus 364 ~--g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~ 438 (762)
. ...|++++.-+++++||.+.++. ..+.-...++.++...|++++++++...+.+..||.+.++.... +.+..
T Consensus 213 g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~t-- 290 (412)
T KOG3881|consen 213 GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGIT-- 290 (412)
T ss_pred CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCcc--
Confidence 7 78999999999999999997765 23444567899999999999999999999999999999998877 77766
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+.+.++..+|.++++++++-|..++|+|+.+.+.+..... ...++++.+.++
T Consensus 291 --------Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-----------Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 291 --------GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-----------KSRLTFILLRDD 342 (412)
T ss_pred --------CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-----------hccccEEEecCC
Confidence 8999999999999999999999999999999776655433 334666666554
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-12 Score=118.25 Aligned_cols=270 Identities=10% Similarity=0.076 Sum_probs=183.6
Q ss_pred cccceeEEEEecCCC--EEEEEecCCeEEEEecCCCceec-------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 352 HPSEVSVLIFSSDGA--YLYSGGKEGVLVVWQLDTGKKKF-------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 352 h~~~v~~~~~s~~g~--~l~s~~~dg~i~~wd~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
....|..++|.-+++ .+...+.+..+..+.+....... ......+|..+... | ..|+++..+|.+.+|.
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-d-g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-D-GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-C-CEEEEEecCCcEEEEe
Confidence 345677788876553 34444355666666665554422 22223345555432 3 3566677899999999
Q ss_pred cCCce----EEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecC--ceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 423 MPSME----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 423 ~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
...+. .+..+..+ ..+..+.-++... .+++|+.. ..+.+||+...+.+.+-..........
T Consensus 132 ~k~~d~hss~l~~la~g-----------~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L- 199 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATG-----------PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL- 199 (412)
T ss_pred ccCCccccccceeeecC-----------CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc-
Confidence 88433 12222221 2345555555444 56668888 889999999886655543322211100
Q ss_pred CcceeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 496 DVTVVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 496 ~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.....++++.|-+. ...||+++ .-+.+++||.+.++.+...- .+. ...++++...|+++++++|
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T---------~~hqvR~YDt~~qRRPV~~f--d~~---E~~is~~~l~p~gn~Iy~g 265 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATIT---------RYHQVRLYDTRHQRRPVAQF--DFL---ENPISSTGLTPSGNFIYTG 265 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEe---------cceeEEEecCcccCcceeEe--ccc---cCcceeeeecCCCcEEEEe
Confidence 01456788999888 88999998 88999999999876654321 122 5589999999999999999
Q ss_pred eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce
Q 040987 574 SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI 652 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v 652 (762)
..-+.+..||++.++..... +.+-.+.|+++..+|.+++||+++ |..|+|+|+++.+++.... -...+
T Consensus 266 n~~g~l~~FD~r~~kl~g~~----------~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~l 334 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGGKLLGCG----------LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRL 334 (412)
T ss_pred cccchhheecccCceeeccc----------cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh-hhccc
Confidence 99999999999998876652 345678999999999999999999 9999999999977765443 23345
Q ss_pred eEEEEeCC
Q 040987 653 MNMSFVGS 660 (762)
Q Consensus 653 ~~~~~s~d 660 (762)
+.+.+.++
T Consensus 335 t~il~~~~ 342 (412)
T KOG3881|consen 335 TFILLRDD 342 (412)
T ss_pred cEEEecCC
Confidence 66666553
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.7e-12 Score=116.78 Aligned_cols=251 Identities=10% Similarity=0.127 Sum_probs=177.0
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec-CCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL-DTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~-~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
.+...+.+.||.+.++....-|...-+++.+.|.++++|-- +.++.- .....+.++.++.+.++...|+++-..|++
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtv 92 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTV 92 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceE
Confidence 34566788999999999988887788999999999999953 344432 233456789999999999999999999999
Q ss_pred EEEEcCC----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 419 HLLKMPS----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 419 ~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
.-+.+.. ....+....|. ..+..+.|+...+++++.+.|..+.---.+.+..+.......
T Consensus 93 tefs~sedfnkm~~~r~~~~h~----------~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------ 156 (404)
T KOG1409|consen 93 TEFALSEDFNKMTFLKDYLAHQ----------ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET------ 156 (404)
T ss_pred EEEEhhhhhhhcchhhhhhhhh----------cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec------
Confidence 8887653 33344444444 788999999999999999999877665555554433322111
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
..+++.+.-. +...|. ..+.|..-.+......... .+.+| .+.+.+++|.|..+.|.+|.
T Consensus 157 -----~~t~~~~d~~--~~fvGd---------~~gqvt~lr~~~~~~~~i~---~~~~h-~~~~~~l~Wd~~~~~LfSg~ 216 (404)
T KOG1409|consen 157 -----PASALQFDAL--YAFVGD---------HSGQITMLKLEQNGCQLIT---TFNGH-TGEVTCLKWDPGQRLLFSGA 216 (404)
T ss_pred -----cCCCCceeeE--EEEecc---------cccceEEEEEeecCCceEE---EEcCc-ccceEEEEEcCCCcEEEecc
Confidence 0111111111 333333 3445555444433322111 13789 99999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
.|..+.+||+...+..... ..+|...|..+..-+--+.+.+++ ||.|.+||++.
T Consensus 217 ~d~~vi~wdigg~~g~~~e----------l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 217 SDHSVIMWDIGGRKGTAYE----------LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ccCceEEEeccCCcceeee----------eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999766544333 456888888888878778888887 99999999753
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-12 Score=115.31 Aligned_cols=279 Identities=14% Similarity=0.180 Sum_probs=188.0
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-----EEEEEccCCCCCCCCC--cccCceeeEEEeCCCC--EEEEe
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSME-----IIRSISGIKLPCPLPE--EYKGLCRDIAFNHDGG--LVALR 464 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~--~l~~~ 464 (762)
..-+.++.|...|.+|++|..+|.|.++.-.... ....++.|.....+.. ..+..|..+.|.++++ .++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3457889999999999999999999999765422 3344555554332111 1124677888988665 56677
Q ss_pred ecCceEEEEEcCCCCcee---------------eEEeecc-cc----------cCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 465 AENYCIHFYSLLDDRGIS---------------EVQVCER-NH----------QPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~---------------~~~~~~~-~~----------~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
+.|.+|++|.+....... .+..... .+ .-...|..-|.++.++.|+..+.++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec--
Confidence 899999999886432211 1110000 00 0112367889999999999999998
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCC----CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccc--
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR----DAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQK-- 591 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~----~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~-- 591 (762)
.|-.|.+|+++-....+.+.. ..++. ..-|++..|+|. .+.++..+..|+|++-|++...+-.
T Consensus 183 --------DdLRINLWnlei~d~sFnIVD--IKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~h 252 (433)
T KOG1354|consen 183 --------DDLRINLWNLEIIDQSFNIVD--IKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAH 252 (433)
T ss_pred --------cceeeeeccccccCCceeEEE--ccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcch
Confidence 577999999986665544432 23331 245888999995 5678888899999999998433211
Q ss_pred --ccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC-CCeEEEEeccccC------------c---e
Q 040987 592 --DLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD-RNVLVAVIGETLT------------P---I 652 (762)
Q Consensus 592 --~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~-~~~~~~~l~~~~~------------~---v 652 (762)
.++ .........+..--..|..+.||++|+|+++-+=-+|++||+. ..+++.+.+.|.. . -
T Consensus 253 sKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdK 332 (433)
T KOG1354|consen 253 SKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDK 332 (433)
T ss_pred hhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhhe
Confidence 110 0000001111222467889999999999999887899999994 4566666655532 1 3
Q ss_pred eEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 653 MNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 653 ~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
..++|+.++.+++||+.... ++++++..|...
T Consensus 333 Fec~~sg~~~~v~TGsy~n~--frvf~~~~gsk~ 364 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNV--FRVFNLARGSKE 364 (433)
T ss_pred eEEEEcCCcceEecccccce--EEEecCCCCcce
Confidence 45789999999999999988 999998777543
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.8e-10 Score=114.10 Aligned_cols=309 Identities=15% Similarity=0.096 Sum_probs=185.5
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..+++++.+|.|..+|..+++..-.. .+.. .....+. .++..++.++
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~----------------------------~~~~--~~~~~p~--v~~~~v~v~~ 112 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV----------------------------DLDE--RLSGGVG--ADGGLVFVGT 112 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee----------------------------cCCC--CcccceE--EcCCEEEEEc
Confidence 557888888999999998777644211 0000 0011122 2466788888
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.++.++.+|.++|+..........+.+.-.. .+..+++++.++.+..+|.++|+.+..+......... ......
T Consensus 113 ~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~-----~~~~sp 186 (377)
T TIGR03300 113 EKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL-----RGSASP 186 (377)
T ss_pred CCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee-----cCCCCC
Confidence 8999999999999986544444433221111 3456777778999999999999988776543211000 000111
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE-EEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV-TLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
.+. + ..++++..++.+..+|..+++...+.......-.........+ ....+ .+..+.+++ .++.+
T Consensus 187 ~~~-~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~---------~~g~l 253 (377)
T TIGR03300 187 VIA-D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS---------YQGRV 253 (377)
T ss_pred EEE-C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE---------cCCEE
Confidence 222 2 3677788889999999999887654332110000000000000 01111 244566665 67899
Q ss_pred EEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCe
Q 040987 532 KFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAM 611 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 611 (762)
..||..+++..+.... . ....+.. ++..++.++.+|.+..+|..+++.+-... . . .....
T Consensus 254 ~a~d~~tG~~~W~~~~-------~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~-------~-~--~~~~~ 313 (377)
T TIGR03300 254 AALDLRSGRVLWKRDA-------S-SYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKND-------E-L--KYRQL 313 (377)
T ss_pred EEEECCCCcEEEeecc-------C-CccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccc-------c-c--cCCcc
Confidence 9999999987765531 1 1112222 45677888889999999998887543321 0 0 01112
Q ss_pred EEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEE
Q 040987 612 TAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVW 678 (762)
Q Consensus 612 ~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vw 678 (762)
.+... .+..|++++ +|.|+++|..+|+.+..+..+...+. +..+. + ..|+.++.||. |+.+
T Consensus 314 ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~--l~~~ 376 (377)
T TIGR03300 314 TAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGD--LYAF 376 (377)
T ss_pred ccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCce--EEEe
Confidence 22222 355777777 99999999999999988876654433 23333 3 35888999987 7665
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=107.00 Aligned_cols=252 Identities=12% Similarity=0.165 Sum_probs=172.8
Q ss_pred eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 105 LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 105 ~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
.+++.++||.+.|+....-|.. .-+++.+.|.++|||--. .++.-.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e-------~gv~~~s~drtvrv~lkrds~q~wp-------------------------- 61 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKE-------EGVISVSEDRTVRVWLKRDSGQYWP-------------------------- 61 (404)
T ss_pred hhhhhhcCchhhhhhheeccCC-------CCeEEccccceeeeEEeccccccCc--------------------------
Confidence 3567889999999999998888 577899999999999532 222111
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEE
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWK 262 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd 262 (762)
.+......+++++.+.++.+.|.++ ..|++.-+.
T Consensus 62 ---------------------------------------------sI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs 96 (404)
T KOG1409|consen 62 ---------------------------------------------SIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFA 96 (404)
T ss_pred ---------------------------------------------hhhhhCCCCceEeeeeccceEEEEEEecceEEEEE
Confidence 1222235678889999999988876 678888776
Q ss_pred ccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 263 VPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
+...-.. -...+....|...+..+-|+-..+++++.+.|..+.---.+.+..+-.+
T Consensus 97 ~sedfnk-m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y----------------------- 152 (404)
T KOG1409|consen 97 LSEDFNK-MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGY----------------------- 152 (404)
T ss_pred hhhhhhh-cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccce-----------------------
Confidence 6532111 0122556689999999999999999999998876643333333211100
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVH 419 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 419 (762)
.+ .....++.+.-. +.+.|...|.|..-.+..... ..+.+|...+.+++|.+....++++..|..+.
T Consensus 153 -----~~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi 222 (404)
T KOG1409|consen 153 -----NF---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVI 222 (404)
T ss_pred -----Ee---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceE
Confidence 00 000111111111 344455556655554443332 45678889999999999999999999999999
Q ss_pred EEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 420 LLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 420 i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
+||+...+ ....+.+|. ..|..+...+.-+.+++++.||.|.+|++...
T Consensus 223 ~wdigg~~g~~~el~gh~----------~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 223 MWDIGGRKGTAYELQGHN----------DKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEeccCCcceeeeeccch----------hhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99997543 334556665 67888888888889999999999999998754
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=113.81 Aligned_cols=193 Identities=15% Similarity=0.164 Sum_probs=150.3
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE------ec--------------CCCeEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL------SQ--------------DGSLMST 515 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------sp--------------~g~~l~~ 515 (762)
|...++|....||.+++|+...++...++....+. .+...+..| +| |-..++-
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~-------s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASL-------SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhc-------cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEe
Confidence 44568899999999999999998776665443221 222333333 22 2234555
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
|. ..|.|.+|+...++..+.+.+ ..| .+.|+++.++.+-..|.+++.|+.+..|+...........
T Consensus 76 gt---------~~g~v~~ys~~~g~it~~~st---~~h-~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~- 141 (541)
T KOG4547|consen 76 GT---------PQGSVLLYSVAGGEITAKLST---DKH-YGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK- 141 (541)
T ss_pred ec---------CCccEEEEEecCCeEEEEEec---CCC-CCcceeeecccccCceEecCCceeEEEEecccceeeeeec-
Confidence 55 778999999999998887764 577 8999999999999999999999999999998877665442
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC-----CCEEEEE-Ec
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS-----SEYLVAT-SW 669 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d-----g~~l~s~-~~ 669 (762)
.....+.+++.+|||+.+++++ +.|++||+++++.+..+.||.++|..++|..+ |.++.+. ..
T Consensus 142 ----------~~~~~~~sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~ 210 (541)
T KOG4547|consen 142 ----------EQKPLVSSLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAA 210 (541)
T ss_pred ----------cCCCccceEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeecccc
Confidence 3467788999999999998875 68999999999999999999999999999987 7776664 33
Q ss_pred CCCCeEEEEECCC
Q 040987 670 GSKPQLSVWNMSK 682 (762)
Q Consensus 670 d~~~~v~vwd~~~ 682 (762)
+.. +.+|-++.
T Consensus 211 ~r~--i~~w~v~~ 221 (541)
T KOG4547|consen 211 ERG--ITVWVVEK 221 (541)
T ss_pred ccc--eeEEEEEc
Confidence 333 88887655
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-09 Score=111.81 Aligned_cols=215 Identities=10% Similarity=0.039 Sum_probs=137.8
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe-EEEEecC---CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL-SSISCAD---NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
..|.+-|.+......+.... ......|+|||+. ++..+.+ ..|+++|+.+++...... .. +...
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~----------g~~~ 236 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQ----------GMLV 236 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CC----------CcEE
Confidence 46777777666554444444 7888999999985 6654443 469999998876655443 22 4456
Q ss_pred eEEEeCCCCEEEEeec---CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRAE---NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
...|+|||+.++.... +..|+++|+.++.. ..+... ........|+|||+.|+..+.+ .+
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~----------~~~d~~p~~SPDG~~I~F~Sdr------~g 299 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNY----------PGIDVNGNFVEDDKRIVFVSDR------LG 299 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccC----------CCccCccEECCCCCEEEEEECC------CC
Confidence 6789999998776532 35788889877642 222211 1112345799999988888632 12
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---------CcEEEEEcccccccccccCCce
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---------GDFKVWICNDELQQKDLQSSGW 598 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~ 598 (762)
...|.++|+.+++..... ..+. ....|||||+.|+..+.. ..|.+.|+.++.......
T Consensus 300 ~~~Iy~~dl~~g~~~rlt----~~g~-----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~---- 366 (419)
T PRK04043 300 YPNIFMKKLNSGSVEQVV----FHGK-----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA---- 366 (419)
T ss_pred CceEEEEECCCCCeEeCc----cCCC-----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC----
Confidence 347888888877653221 1121 124899999999887654 257888887775433321
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCe
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNV 640 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~ 640 (762)
........|+|||+.|+... ...+.+.+++...
T Consensus 367 ---------~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~ 403 (419)
T PRK04043 367 ---------NGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNK 403 (419)
T ss_pred ---------CCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCe
Confidence 11223589999999888764 2347777887543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-09 Score=111.39 Aligned_cols=224 Identities=14% Similarity=0.085 Sum_probs=136.2
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCE-EEEEe-C---CEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKR-LLVCT-S---NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~-la~~~-~---~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
...|.+-|........+.... .... ..|||||+. +++.+ + ..|.++|+.+|+...... ..+......|+|||
T Consensus 168 ~~~l~~~d~dg~~~~~~~~~~-~~~~-p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 168 KSNIVLADYTLTYQKVIVKGG-LNIF-PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred cceEEEECCCCCceeEEccCC-CeEe-EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 346777777766555454433 5554 999999985 66544 2 579999998887544333 45566778899999
Q ss_pred CcccceeeeEEeeecC--CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 127 TPATKILSYCWTASLD--GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d--~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
+ .++++.+.+ ..|.++|+.+++..+ +.
T Consensus 245 ~------~la~~~~~~g~~~Iy~~dl~~g~~~~-LT-------------------------------------------- 273 (419)
T PRK04043 245 S------KLLLTMAPKGQPDIYLYDTNTKTLTQ-IT-------------------------------------------- 273 (419)
T ss_pred C------EEEEEEccCCCcEEEEEECCCCcEEE-cc--------------------------------------------
Confidence 5 333444433 456666666554221 11
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----CeEEEEEccCchhhhheeeeeeecc
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----RKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
.+........|+|||+.|+...+ ..|.+.|+.+++.. ++...
T Consensus 274 ----------------------------~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~-----rlt~~- 319 (419)
T PRK04043 274 ----------------------------NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE-----QVVFH- 319 (419)
T ss_pred ----------------------------cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE-----eCccC-
Confidence 11111223479999999985543 27888899887753 22221
Q ss_pred CcCeEEEEEcCCCcEEEEeecC---------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVT---------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
.. ....|+|||++|+..... ..|.+.|+.++... .+..
T Consensus 320 g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-------------------------------~LT~ 366 (419)
T PRK04043 320 GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-------------------------------RLTA 366 (419)
T ss_pred CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-------------------------------ECCC
Confidence 11 124899999998876543 25777777665321 2221
Q ss_pred cccceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCe
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v 397 (762)
. .......|+|||+.|+....+ ..+.+.+++......++...+.+
T Consensus 367 ~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~g~~ 414 (419)
T PRK04043 367 N-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKVGKI 414 (419)
T ss_pred C-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCCeeEEeecCCCcc
Confidence 1 122357899999988876543 34777787765555444433333
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-09 Score=107.99 Aligned_cols=279 Identities=13% Similarity=0.038 Sum_probs=173.6
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
+..++.++.++.+..+|..+|+..........+. .+. .++..+++++.++.+..+|..+|+.+.......
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------- 135 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------- 135 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-------
Confidence 5678888888999999999998865444333322 122 356778888899999999999999887654321
Q ss_pred cccCcee-eEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 444 EYKGLCR-DIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 444 ~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.+. ...+ .+..++.++.++.++.+|..+++.+.+.......... .. ....... + ..++.+.
T Consensus 136 ----~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~----~~-~~sp~~~-~-~~v~~~~----- 197 (377)
T TIGR03300 136 ----EVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTL----RG-SASPVIA-D-GGVLVGF----- 197 (377)
T ss_pred ----eeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceee----cC-CCCCEEE-C-CEEEEEC-----
Confidence 111 1122 2446777788999999999999887765432110000 00 0111111 2 3555565
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcC--CCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHP--NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp--d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.+..+|..+++..+........+.. ......+.-+| .+..++.++.+|.++.||..+++..-..
T Consensus 198 ----~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~------ 267 (377)
T TIGR03300 198 ----AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR------ 267 (377)
T ss_pred ----CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee------
Confidence 6678999999988876654311000000 00000111111 2457777888999999999988654332
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC-ceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT-PIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~-~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
. ......+. .++..+.+++ +|.++.+|..+|+.+-....... ....... .+..|++++.+|. |++
T Consensus 268 -~------~~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~--l~~ 334 (377)
T TIGR03300 268 -D------ASSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGY--LHW 334 (377)
T ss_pred -c------cCCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCE--EEE
Confidence 1 01111222 2455666666 99999999999987765432111 1222222 4568999999988 999
Q ss_pred EECCCCceeeEEEEee
Q 040987 678 WNMSKLSISWSYLLHV 693 (762)
Q Consensus 678 wd~~~~~~~~~~~~~~ 693 (762)
+|..+|++++++..+.
T Consensus 335 ~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 335 LSREDGSFVARLKTDG 350 (377)
T ss_pred EECCCCCEEEEEEcCC
Confidence 9999999999888765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.9e-08 Score=89.41 Aligned_cols=250 Identities=16% Similarity=0.192 Sum_probs=150.0
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
++.+.||+.||+. .|..|.|-..+. ...+...+..+.+. -.-..++||||+..||.+...|+|++||+..
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~-------PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPN-------PQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCC-------chheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 5678899988876 677777766554 23333333333221 3447899999999999999999999999975
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCC------CeEEEEeeeccccCCCceeEEEEEEecC--CCceeEEEEEe
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDG------SLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNKEFTLSTIV 549 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g------~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~ 549 (762)
. .+..+.... ....+....|..+.|-+-. ..|.+.. .+|.++-|-+.. .+.-.......
T Consensus 75 ~-~lf~I~p~~---~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~---------Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 75 S-ELFVIPPAM---SFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN---------YRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred c-eeEEcCccc---ccCCccccceeeeEeeccccccccceeEEEEe---------ccceeeeEEEEcccCCcceeeEEEE
Confidence 3 333333211 1112235667777775532 1233333 567777777643 33333333444
Q ss_pred ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE---cCCCcEEEEE
Q 040987 550 YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF---SADGSVLAVA 626 (762)
Q Consensus 550 ~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~la~~ 626 (762)
+..|....|+++.++|..++|+.|+.... +.+.. .+....+++-.. +|..+.+...
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~s---------------~a~~~GLtaWRiL~~~Pyyk~v~~~ 200 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGMS---------------KASSCGLTAWRILSDSPYYKQVTSS 200 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCC------CCccc---------------cccccCceEEEEcCCCCcEEEcccc
Confidence 45555779999999999998887764322 00000 001222332222 2222222222
Q ss_pred cC------CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 627 AE------TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 627 ~d------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.| .+-.+|.+-+.+.........+.|..|..||||+.||+...+|. |.+|++.+.++........
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~--lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS--LSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe--EEEEecCcchhhcccchhh
Confidence 12 12345555544333322334566999999999999999999998 9999999988776655543
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-09 Score=104.16 Aligned_cols=189 Identities=17% Similarity=0.194 Sum_probs=148.0
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceecc----CCCCCCeEEEEe------C--------------CCCCeEEEEecCCcE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFL----PRIGSPLLYFTE------S--------------PDPSLSSISCADNQV 418 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~v~~~~~------s--------------~~~~~l~~~~~d~~i 418 (762)
|...++|....||.+++||..+++.... ....+...+..| + -|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4457899999999999999998887421 122233333333 2 234567778889999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
.+|+...++....+.... |.+.|.++.++.+-..|.+++.|+.+..|+......+...... .
T Consensus 83 ~~ys~~~g~it~~~st~~--------h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~----------~ 144 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDK--------HYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ----------K 144 (541)
T ss_pred EEEEecCCeEEEEEecCC--------CCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC----------C
Confidence 999999999998887543 4488999999999999999999999999999988777666543 4
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CCeEEEE
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RRAAVSS 573 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~~l~~~ 573 (762)
..+.+++.+|||+.+++++ ++|++||+++.+....+ .|| .+.|+++.|--+ |.++.++
T Consensus 145 ~~~~sl~is~D~~~l~~as-----------~~ik~~~~~~kevv~~f-----tgh-~s~v~t~~f~~~~~g~~G~~vLss 207 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLTAS-----------RQIKVLDIETKEVVITF-----TGH-GSPVRTLSFTTLIDGIIGKYVLSS 207 (541)
T ss_pred CccceEEEcCCCCEEEecc-----------ceEEEEEccCceEEEEe-----cCC-CcceEEEEEEEeccccccceeeec
Confidence 5588999999999999998 69999999999887766 789 999999999876 6666554
Q ss_pred -eCCCcEEEEEccc
Q 040987 574 -SYGGDFKVWICND 586 (762)
Q Consensus 574 -~~dg~i~iwd~~~ 586 (762)
..+.-+.+|-...
T Consensus 208 a~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 208 AAAERGITVWVVEK 221 (541)
T ss_pred cccccceeEEEEEc
Confidence 3445577787654
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-09 Score=92.93 Aligned_cols=273 Identities=15% Similarity=0.152 Sum_probs=171.0
Q ss_pred ccccEEEEecCCccccc--eeeeccCCCceEEEECC---CCCE-EE-EEeCCeEEEEEccCchhhhheeeeeeecc---C
Q 040987 212 MNGRICKCNLTESRLAG--GVTLAEMKEPQVITISS---SGKY-FG-IRKQRKLLIWKVPDVEAERVVMRKITLHH---T 281 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~sp---dg~~-la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~ 281 (762)
..|.+.+|++...+... .........+..+.|.- +|.+ ++ +-..|.|.++.....+.. ....-+... .
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss--~~L~~ls~~ki~~ 121 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS--VHLRGLSSKKISV 121 (339)
T ss_pred eccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee--eeecccchhhhhh
Confidence 45788888887766652 22333445555566542 4442 23 346788888876654432 000111111 1
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++.|++.+..++++..+|.+.+-+...... +.++.++.|.-+++...|
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l----------------------------e~vq~wk~He~E~Wta~f 173 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVL----------------------------EKVQTWKVHEFEAWTAKF 173 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeee----------------------------eecccccccceeeeeeec
Confidence 1245778999999999999999988555432211 224578899999999999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCc-ee--ccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCC-ceEEEEEccC
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGK-KK--FLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPS-MEIIRSISGI 435 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~-~~--~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~ 435 (762)
+. +.+.+++|+.|+.+..||++... .+ ....|...|.++.-+| .+.++++|+.|..|++||.++ ++++..-..
T Consensus 174 ~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v- 252 (339)
T KOG0280|consen 174 SDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV- 252 (339)
T ss_pred ccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-
Confidence 75 34688999999999999999333 22 3456777899988776 678999999999999999986 454433221
Q ss_pred CCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.+.|..+..+|. ++.|+++-.+| .++.+...+... +...... ...|..-...-.|......|
T Consensus 253 ----------~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e--~~~~~~s---~~~hdSl~YG~DWd~~~~~l 316 (339)
T KOG0280|consen 253 ----------GGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE--FQIVLPS---DKIHDSLCYGGDWDSKDSFL 316 (339)
T ss_pred ----------ccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc--hheeeec---cccccceeecccccccccee
Confidence 178999999994 33455555555 677777654332 1111111 11123444555554445678
Q ss_pred EEEeeeccccCCCceeEEE-EEEecCC
Q 040987 514 STVDIKLAEEGIGSLVCLK-FWVSGTQ 539 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~-iwd~~~~ 539 (762)
|+++. .|+.++ +|-..++
T Consensus 317 ATCsF--------YDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 317 ATCSF--------YDKKIRQLWLHITG 335 (339)
T ss_pred eeeec--------cccceeeeeeeccC
Confidence 88764 566644 6765544
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-08 Score=88.39 Aligned_cols=240 Identities=13% Similarity=-0.013 Sum_probs=159.3
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceee
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISE 483 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 483 (762)
...+|+.|+..|...+|...+.+.... ...+...+ ..+...+-+ ...+..++.|.+++++++..+..-..
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v-------~~~~r~cd~--~~~~~i~sndht~k~~~~~~~s~~~~ 153 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDV-------TLVKRYCDL--KFPLNIASNDHTGKTMVVSGDSNKFA 153 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccch-------hhhhhhccc--ccceeeccCCcceeEEEEecCcccce
Confidence 345788888999999999986543322 22222111 011112211 22356677888888888765543222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
.... .-.+.++++++|++++++.+ ....|..|.++.......- . ...+. ...-.+..|
T Consensus 154 ~h~~----------~~~~ns~~~snd~~~~~~Vg---------ds~~Vf~y~id~~sey~~~-~-~~a~t-~D~gF~~S~ 211 (344)
T KOG4532|consen 154 VHNQ----------NLTQNSLHYSNDPSWGSSVG---------DSRRVFRYAIDDESEYIEN-I-YEAPT-SDHGFYNSF 211 (344)
T ss_pred eecc----------ccceeeeEEcCCCceEEEec---------CCCcceEEEeCCccceeee-e-Eeccc-CCCceeeee
Confidence 2111 12378899999999999998 7788999998765432211 1 11233 455678899
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc--EEEEEc-CCeEEEEeCCCCe
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS--VLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~la~~~-d~~i~iwd~~~~~ 640 (762)
+.....+|++..||++.|||++.-....... ......|.+.+..+.|++-|. +|.... -+.+.+.|+.+++
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEI------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhh------cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 9999999999999999999998765544332 112335899999999998664 455554 7899999999986
Q ss_pred EEEEec-------cccC-ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 641 LVAVIG-------ETLT-PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 641 ~~~~l~-------~~~~-~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
..+.+. .|.. .|..-.|+.++..+.+.+.+. +.-|++.+..
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~---~ae~ni~srs 334 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ---GAEYNILSRS 334 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccchh---hheeeccccc
Confidence 544432 1222 388888999888888888776 7778776643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.3e-08 Score=89.15 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=139.6
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccc--eEEeee---cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTG--LQISSL---EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~--~~~~~l---~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++.+.||++||...|..|.|-..++. .++.+. +.....-.-++||||+ .+||.+...|+|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-------tlLa~a~S~G~i~vfdl~g- 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-------TLLAYAESTGTIRVFDLMG- 74 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-------cEEEEEcCCCeEEEEeccc-
Confidence 67899999999999999999987653 233332 3344567889999999 6888999999999999875
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
..+..+.... + + ...
T Consensus 75 ~~lf~I~p~~---~--~------------------------------------------------------------~~d 89 (282)
T PF15492_consen 75 SELFVIPPAM---S--F------------------------------------------------------------PGD 89 (282)
T ss_pred ceeEEcCccc---c--c------------------------------------------------------------CCc
Confidence 4343433210 0 0 000
Q ss_pred cCCCceEEEECCC-------CCEEEEEeCCeEEEEEccCch---hhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-
Q 040987 234 EMKEPQVITISSS-------GKYFGIRKQRKLLIWKVPDVE---AERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT- 302 (762)
Q Consensus 234 ~~~~v~~~~~spd-------g~~la~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d- 302 (762)
-...|..+.|.+- -++|+....|.++-|-+..+. ....-...+...+...|.++.|+|..+.|++|+..
T Consensus 90 ~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~ 169 (282)
T PF15492_consen 90 LSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQ 169 (282)
T ss_pred cccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCC
Confidence 0122233333221 245667777777777764322 11111122233457799999999999988877541
Q ss_pred ----------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 303 ----------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 303 ----------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
--+..|.+-.+.++...-... ...+.....+..+................+.|..|..||||+.|++..
T Consensus 170 ~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~-~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 170 NQDGMSKASSCGLTAWRILSDSPYYKQVTSS-EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred CCCccccccccCceEEEEcCCCCcEEEcccc-CccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 136778776654432110000 000000000001111011111111123467899999999999999999
Q ss_pred cCCeEEEEecCCCcee
Q 040987 373 KEGVLVVWQLDTGKKK 388 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~ 388 (762)
.+|.|.+|++-+-+.+
T Consensus 249 ~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 249 FSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cCCeEEEEecCcchhh
Confidence 9999999999876553
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=9e-08 Score=109.83 Aligned_cols=274 Identities=11% Similarity=0.035 Sum_probs=163.6
Q ss_pred eEEEEecC-CCEEEEEecCCeEEEEecCCCceeccCCC--------------CCCeEEEEeCCCCCeEEEEec-CCcEEE
Q 040987 357 SVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKFLPRI--------------GSPLLYFTESPDPSLSSISCA-DNQVHL 420 (762)
Q Consensus 357 ~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~-d~~i~i 420 (762)
..++++++ ++.+++-...+.|+++|............ -.....++++++++.|+++.. .+.|++
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 45788875 55566666678899999865433222210 123577899998887777654 467999
Q ss_pred EEcCCceEEEEEccCCCCC-CCCC------cccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeec----
Q 040987 421 LKMPSMEIIRSISGIKLPC-PLPE------EYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCE---- 488 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~-~~~~------~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---- 488 (762)
+|..++. +.++.+..... .... ..-.....++++| ++..+++.+.++.|++||..++... .+....
T Consensus 651 id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~ 728 (1057)
T PLN02919 651 IDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERN 728 (1057)
T ss_pred EecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCcccc
Confidence 9988754 33332210000 0000 0002346799999 5666667678889999998776432 111100
Q ss_pred -ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE--------Eeec--------
Q 040987 489 -RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--------IVYE-------- 551 (762)
Q Consensus 489 -~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--------~~~~-------- 551 (762)
.+.......-.....++++|+++.|.++.. .++.|++||+.++........ ..+.
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs--------~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~ 800 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADS--------ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE 800 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEEC--------CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence 000000001234677999999997766653 678999999987653211100 0000
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC--CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS--SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
.. ...-..++++++|+++++-+.++.|++||..++........ ..+.--......-.....++++++|+++++-+ +
T Consensus 801 ~~-l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 801 VL-LQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred hh-ccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 00 11235889999999888888899999999987655432210 00000000111224577899999999777666 8
Q ss_pred CeEEEEeCCCCeE
Q 040987 629 TVITLWDPDRNVL 641 (762)
Q Consensus 629 ~~i~iwd~~~~~~ 641 (762)
+.|++||+.+++.
T Consensus 880 n~Irvid~~~~~~ 892 (1057)
T PLN02919 880 SLIRYLDLNKGEA 892 (1057)
T ss_pred CEEEEEECCCCcc
Confidence 9999999998764
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-09 Score=95.02 Aligned_cols=276 Identities=12% Similarity=0.188 Sum_probs=178.0
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-----EEEEEccCCCCCCCCCc--ccCceeeEEEeCCCC--EEEE
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME-----IIRSISGIKLPCPLPEE--YKGLCRDIAFNHDGG--LVAL 463 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~--~l~~ 463 (762)
....|+++.|...|.++++|...|.|.+|.-.... -...+++|..+..+... ....|..+.|..++. .++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34568999999999999999889999999866422 22345666543321111 123566777766543 5666
Q ss_pred eecCceEEEEEcCCCCc--eee------EEeecc---------------cc------c----CCCCcceeEEEEEEecCC
Q 040987 464 RAENYCIHFYSLLDDRG--ISE------VQVCER---------------NH------Q----PGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 464 ~~~dg~i~i~d~~~~~~--~~~------~~~~~~---------------~~------~----~~~~~~~~v~~~~~sp~g 510 (762)
.+.|.+|++|.+..... +.+ +....+ .| . -...|...+.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 78999999998865310 000 000000 00 0 012357778999999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC----CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR----DAGISAVAFHPN-RRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~----~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~ 585 (762)
..++++ .+-.|.+|+++-....+.+.. ..+|. ..-|++..|+|. ...+...+..|.|++-|++
T Consensus 185 et~lSa----------DdLrINLWnl~i~D~sFnIVD--iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 185 ETLLSA----------DDLRINLWNLEIIDGSFNIVD--IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred heeeec----------cceeeeeccccccCCceEEEe--ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 999988 567899999986655444432 24552 235788999995 4566677788999999998
Q ss_pred cccccccc----c-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC-eEEEEecccc----------
Q 040987 586 DELQQKDL----Q-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN-VLVAVIGETL---------- 649 (762)
Q Consensus 586 ~~~~~~~~----~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~-~~~~~l~~~~---------- 649 (762)
....-... + .....-+.....-...|..+.|+++|+++++-+--+|+|||+... .++.++.-|.
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi~~h~~l~~~l~d~Y 332 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVY 332 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceeechHHHHHHHHHhhh
Confidence 43321110 0 000000011122346788999999999999988889999999754 4666664442
Q ss_pred --Cce---eEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 650 --TPI---MNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 650 --~~v---~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.| ..+.||.|.+.+.+|+.... .-+|-+.+
T Consensus 333 EnDaifdkFeisfSgd~~~v~sgsy~NN--fgiyp~~s 368 (460)
T COG5170 333 ENDAIFDKFEISFSGDDKHVLSGSYSNN--FGIYPTDS 368 (460)
T ss_pred hccceeeeEEEEecCCcccccccccccc--eeeecccc
Confidence 122 34789999999999998876 77776443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-08 Score=109.68 Aligned_cols=281 Identities=11% Similarity=0.080 Sum_probs=161.9
Q ss_pred EEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccC-CCCC---CCCCcccCceeeEEEeCCCCEEEEee-cCceEE
Q 040987 398 LYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGI-KLPC---PLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIH 471 (762)
Q Consensus 398 ~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~ 471 (762)
..++++++ +..+++-..++.|.++|.. +..+..+.+. .... ......-.....++++++++.|+++. .++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 35778775 4455555567889999986 4444443321 1000 00011113457899999888665554 457899
Q ss_pred EEEcCCCCceeeEEeec-ccc--cCC----CCcceeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 472 FYSLLDDRGISEVQVCE-RNH--QPG----DDVTVVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~-~~~--~~~----~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
.+|..++. +..+.... .+. ... ...-.....++++|+ +..+++.. .++.|++||..++....
T Consensus 650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~---------~~~~I~v~d~~~g~v~~ 719 (1057)
T PLN02919 650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA---------GQHQIWEYNISDGVTRV 719 (1057)
T ss_pred EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC---------CCCeEEEEECCCCeEEE
Confidence 99987653 22222110 000 000 000123468999995 44445544 67899999987764321
Q ss_pred EEEEE----eecCC-----CCCceEEEEEcCCCCeE-EEEeCCCcEEEEEccccccccccc-CCce--eeeeec------
Q 040987 544 TLSTI----VYEPH-----RDAGISAVAFHPNRRAA-VSSSYGGDFKVWICNDELQQKDLQ-SSGW--SCHAVG------ 604 (762)
Q Consensus 544 ~~~~~----~~~~h-----~~~~v~~~~~spd~~~l-~~~~~dg~i~iwd~~~~~~~~~~~-~~~~--~~~~~~------ 604 (762)
+... ...++ .......++++|+++.| ++-+.++.|++||+.++....... .... ......
T Consensus 720 -~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 720 -FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred -EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 1100 00000 01235679999999854 455567899999998754321100 0000 000000
Q ss_pred -ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec-------------cccCceeEEEEeCCCCEEEEEEc
Q 040987 605 -SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG-------------ETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 605 -~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~-------------~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
...-.....++++++|+++++-. +++|++||..++....... +.......++++++|+.+++-+.
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 00112346899999998766666 8999999999886654321 11124678999999998877777
Q ss_pred CCCCeEEEEECCCCceeeEEEEe
Q 040987 670 GSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 670 d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
++. |++||+.+++....+...
T Consensus 879 Nn~--Irvid~~~~~~~~~~~l~ 899 (1057)
T PLN02919 879 NSL--IRYLDLNKGEAAEILTLE 899 (1057)
T ss_pred CCE--EEEEECCCCccceeEeec
Confidence 776 999999998764434333
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-08 Score=88.27 Aligned_cols=272 Identities=13% Similarity=0.077 Sum_probs=168.6
Q ss_pred CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC---CCc-EEEEeecCCeEEEEeccCCceeeccccccccccccc
Q 040987 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP---TQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNN 330 (762)
Q Consensus 255 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 330 (762)
.|.+.+|++...+..+ ...+.......+..+.|.. +|. .++-+..+|.|.++........-
T Consensus 45 ~Gkl~Lys~~d~~~~~--l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~------------- 109 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSP--LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV------------- 109 (339)
T ss_pred ccceEEEeecccccCc--cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeee-------------
Confidence 4678888888777652 2233334455677777764 444 55667778999999864432111
Q ss_pred ccCCCCcccCCccccceeeecc---ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCC
Q 040987 331 EEERPGVRDNDDADLCTTWHWH---PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESP 404 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~ 404 (762)
.+..+..- .....++.|++.+..++++..+|.+.+-+...... +....|.-++....|+.
T Consensus 110 --------------~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~ 175 (339)
T KOG0280|consen 110 --------------HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSD 175 (339)
T ss_pred --------------eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeeccc
Confidence 00111111 11245678888888899998889988655544443 24567777888888865
Q ss_pred -CCCeEEEEecCCcEEEEEcCC-ceEEEE-EccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCC-CC
Q 040987 405 -DPSLSSISCADNQVHLLKMPS-MEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLD-DR 479 (762)
Q Consensus 405 -~~~~l~~~~~d~~i~i~d~~~-~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~-~~ 479 (762)
+.+.+++|+.|+.+.-||++. ++.+.. .+.|. ..|.++.-+| .+.++++|+.|..|++||.++ ++
T Consensus 176 ~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~----------~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k 245 (339)
T KOG0280|consen 176 KEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHT----------SGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK 245 (339)
T ss_pred CCCceEEecCCCceEEEEEecCCcceeeecceeee----------cceEEEecCCCCCceEEEeccccceeeeehhcccC
Confidence 447889999999999999983 333322 22233 6777777776 577999999999999999984 34
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCC--eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGS--LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
++..... .+.|..+..+|.-. .|+++- -+-.+|-+.+...............| .+-
T Consensus 246 Pl~~~~v-----------~GGVWRi~~~p~~~~~lL~~CM----------h~G~ki~~~~~~~~e~~~~~~s~~~h-dSl 303 (339)
T KOG0280|consen 246 PLFKAKV-----------GGGVWRIKHHPEIFHRLLAACM----------HNGAKILDSSDKVLEFQIVLPSDKIH-DSL 303 (339)
T ss_pred ccccCcc-----------ccceEEEEecchhhhHHHHHHH----------hcCceEEEecccccchheeeeccccc-cce
Confidence 3333222 56799999998543 333332 13456666655444333333334556 444
Q ss_pred eEEEEEcCCCCeEEEEe-CCCcEE-EEEcccc
Q 040987 558 ISAVAFHPNRRAAVSSS-YGGDFK-VWICNDE 587 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~-~dg~i~-iwd~~~~ 587 (762)
...-.|......||+++ .|+.++ +|-.-++
T Consensus 304 ~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 304 CYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred eeccccccccceeeeeeccccceeeeeeeccC
Confidence 44455543345688765 466644 6755443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-08 Score=91.41 Aligned_cols=302 Identities=14% Similarity=0.146 Sum_probs=174.4
Q ss_pred cccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----EEeeecCCc------------cceeEEEEeCCCCccccee
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----QISSLEGHK------------APVTTVIVVPASTPATKIL 133 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----~~~~l~~h~------------~~V~~v~~s~~~~~~~~l~ 133 (762)
.+.|+ ++.|...|.|||+|. +|.|.++.-+... ....+++|. ..|..+.|..+++ .
T Consensus 26 ad~It-aVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~----r- 99 (460)
T COG5170 26 ADKIT-AVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTG----R- 99 (460)
T ss_pred cceee-EEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCC----c-
Confidence 34566 499999999999999 6999999865432 234466664 4588899988773 2
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
..+.-.+.|.+|++|.+......-.-+ ..-..++.+|. ......++.+.. |-..--|
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~-nnls~~~~~~~------~g~~~s~~~l~l----------------prls~hd 156 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAE-NNLSDSFHSPM------GGPLTSTKELLL----------------PRLSEHD 156 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhc-ccccccccccc------CCCcCCHHHhhc----------------ccccccc
Confidence 233456679999999987653211111 00000000000 000000000000 0000001
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeee----eeccCcCeEEEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKI----TLHHTKKLTVLAF 289 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~----~~~~~~~v~~~~~ 289 (762)
..|.. +..+.....|.-.+.++.|..|.+.+.++.+-.|.+|++.-..... .+..+ ...-..-|++..|
T Consensus 157 ~iiaa------~p~rvyaNaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeF 229 (460)
T COG5170 157 EIIAA------KPCRVYANAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEF 229 (460)
T ss_pred eEEEe------ccceeccccceeEeeeeeecCchheeeeccceeeeeccccccCCce-EEEeccCccHHHHHHHHhhccc
Confidence 11111 0111233457888999999999999999999999999987443210 00000 1112345788999
Q ss_pred cCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE
Q 040987 290 HPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL 368 (762)
Q Consensus 290 sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 368 (762)
+|.. ..+...+..|.|++-|++.......... ......++....-+.+-...|..+.|+++|+++
T Consensus 230 hp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k--------------lfe~~~D~v~~~ff~eivsSISD~kFs~ngryI 295 (460)
T COG5170 230 HPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK--------------LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYI 295 (460)
T ss_pred CHhHcceEEEecCCCcEEehhhhhhhhccCchh--------------hhhhccCcccchhHHHHhhhhcceEEcCCCcEE
Confidence 9954 4566777899999999863321100000 000001112223344455678899999999999
Q ss_pred EEEecCCeEEEEecCCCce-e-ccCCC------------CCCe---EEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 369 YSGGKEGVLVVWQLDTGKK-K-FLPRI------------GSPL---LYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 369 ~s~~~dg~i~~wd~~~~~~-~-~~~~~------------~~~v---~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
++-+. -++++||+...+. + ..+-| ...| ..+.||.|.+.+++|+..+..-+|-..
T Consensus 296 lsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 296 LSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred EEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 87655 6899999876543 1 11111 1222 357889999999999988888887644
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-07 Score=87.31 Aligned_cols=247 Identities=11% Similarity=0.070 Sum_probs=157.2
Q ss_pred eeEEEEec-CCCEEEEEecCCe-EEEEecCCCceeccC-CCCCC--eEEEEeCCCCCeEEEEec-----CCcEEEEEcC-
Q 040987 356 VSVLIFSS-DGAYLYSGGKEGV-LVVWQLDTGKKKFLP-RIGSP--LLYFTESPDPSLSSISCA-----DNQVHLLKMP- 424 (762)
Q Consensus 356 v~~~~~s~-~g~~l~s~~~dg~-i~~wd~~~~~~~~~~-~~~~~--v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~- 424 (762)
...++.+| ++..++.+-.-|+ ..+||..+++..... ...+. --.-+||+||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 34577888 4556666666654 788999998875322 22222 224689999999998744 4679999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec------------------CceEEEEEcCCCCceeeEEe
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE------------------NYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~ 486 (762)
+.+.+.++..+- -....+.+.|||+.|+++.. +-.+.+.|..+++.+.+...
T Consensus 87 ~~~ri~E~~s~G----------IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L 156 (305)
T PF07433_consen 87 GYRRIGEFPSHG----------IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL 156 (305)
T ss_pred CcEEEeEecCCC----------cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence 677777777655 23467889999988877631 12455667777776665444
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
.... +...+..+++.++|..++......+... .---+-+++....-............- .+.+-+|+++++
T Consensus 157 p~~~------~~lSiRHLa~~~~G~V~~a~Q~qg~~~~--~~PLva~~~~g~~~~~~~~p~~~~~~l-~~Y~gSIa~~~~ 227 (305)
T PF07433_consen 157 PPDL------HQLSIRHLAVDGDGTVAFAMQYQGDPGD--APPLVALHRRGGALRLLPAPEEQWRRL-NGYIGSIAADRD 227 (305)
T ss_pred Cccc------cccceeeEEecCCCcEEEEEecCCCCCc--cCCeEEEEcCCCcceeccCChHHHHhh-CCceEEEEEeCC
Confidence 3222 2678999999999987776653211110 112333443332211111110001112 468999999999
Q ss_pred CCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 567 RRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 567 ~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+.++++.+ ..+.+.+||..++..+.... -..+..++-.+++ ++++.+.|.+...+
T Consensus 228 g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-------------l~D~cGva~~~~~-f~~ssG~G~~~~~~ 283 (305)
T PF07433_consen 228 GRLIAVTSPRGGRVAVWDAATGRLLGSVP-------------LPDACGVAPTDDG-FLVSSGQGQLIRLS 283 (305)
T ss_pred CCEEEEECCCCCEEEEEECCCCCEeeccc-------------cCceeeeeecCCc-eEEeCCCccEEEcc
Confidence 98876655 56789999999998877653 4567777877777 66666666644443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.9e-10 Score=107.27 Aligned_cols=294 Identities=16% Similarity=0.147 Sum_probs=185.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|..++--.+.+.+++++.|.+|++|.++.... ......+..+++.|..
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-----------------------~~~tsaCQfTY~aHkk 785 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-----------------------EIGTSACQFTYQAHKK 785 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-----------------------ccccceeeeEhhhccC
Confidence 45668999999998777888899999999999999854310 0011235577889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec----cCCCC--CCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF----LPRIG--SPLLYFTESPDPSLSSIS-CADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~----~~~~~--~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~ 427 (762)
+|.++.|-.+-++++++ ||.|.+||.--++... .+.++ +.|.++. +-+...+..+ +...+++++|.+..+
T Consensus 786 ~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce 862 (1034)
T KOG4190|consen 786 PIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCE 862 (1034)
T ss_pred cccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeeccccc
Confidence 99999999998888765 6889999987777632 12222 2333332 2344555555 568899999999887
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
....++....+. .+..+.+++..+.|++++.+-.+|+|.+.|.++++.+....... .....++ .
T Consensus 863 ~~~E~kVcna~~-----Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdllqla-a 926 (1034)
T KOG4190|consen 863 WTCELKVCNAPG-----PNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDLLQLA-A 926 (1034)
T ss_pred ceeeEEeccCCC-----CchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chhhhhc-C
Confidence 766655432111 12678899999999999999999999999999998766544321 1122222 2
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEE-EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKF-WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
|..+.++... .|.++.+ |....+....+.+......| -. -.-|..|++......+.+|.-..
T Consensus 927 psdq~L~~sa---------ldHslaVnWhaldgimh~q~kpppepah---fl-----qsvgpSLV~a~~Gn~lgVYad~a 989 (1034)
T KOG4190|consen 927 PSDQALAQSA---------LDHSLAVNWHALDGIMHLQDKPPPEPAH---FL-----QSVGPSLVTAQNGNILGVYADSA 989 (1034)
T ss_pred chhHHHHhhc---------ccceeEeeehhcCCeeeeccCCCCcchh---hh-----hccCceeEEeccCcEEEEEecch
Confidence 4455666555 6778888 87776655544432211222 11 11255677766666677774221
Q ss_pred cccc-ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 587 ELQQ-KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 587 ~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
.... ..+. . .....-.+..++++--|=..-+..|+ .|.|.+
T Consensus 990 ~~ha~stit--K----iR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 990 ELHAESTIT--K----IRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhhc--c----ccccccCCccceeeeccccchhhccCCCCceee
Confidence 1100 0000 0 00112245667777777665555565 677765
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=84.66 Aligned_cols=228 Identities=15% Similarity=0.079 Sum_probs=142.6
Q ss_pred EEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 358 VLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 358 ~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
+++|.+ ++.++++--..+.|..|+..+++........ ...+++. +++.+ +++.. +.+.++|..+++........
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l-~v~~~-~~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRL-YVADS-GGIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEE-EEEET-TCEEEEETTTTEEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEE-EEEEc-CceEEEecCCCcEEEEeecc
Confidence 578888 5655666556799999999988765433222 6667776 66544 44434 55666699888655444431
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
... ........+++.|+|++.++.... |.|..++.. ++ ...+... ......++|+
T Consensus 80 ~~~-----~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~----------~~~pNGi~~s 142 (246)
T PF08450_consen 80 DGG-----VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADG----------LGFPNGIAFS 142 (246)
T ss_dssp TTC-----SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEE----------ESSEEEEEEE
T ss_pred CCC-----cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecC----------cccccceEEC
Confidence 100 011577899999999977765533 567777776 33 2222211 2347899999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
||++.|..+.. ..+.|..|++..... ..............+..-.+++..+|++.++....+.|.++|.+
T Consensus 143 ~dg~~lyv~ds--------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~- 213 (246)
T PF08450_consen 143 PDGKTLYVADS--------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD- 213 (246)
T ss_dssp TTSSEEEEEET--------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-
T ss_pred Ccchheeeccc--------ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-
Confidence 99998876653 667899999975443 22111111111102347789999999988888788999999987
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVA 626 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~ 626 (762)
++....+. .....+++++|. ++.+.|.+.
T Consensus 214 G~~~~~i~-----------~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 214 GKLLREIE-----------LPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp SCEEEEEE------------SSSSEEEEEEESTTSSEEEEE
T ss_pred ccEEEEEc-----------CCCCCEEEEEEECCCCCEEEEE
Confidence 65554442 123588999994 676665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-06 Score=83.95 Aligned_cols=236 Identities=15% Similarity=0.055 Sum_probs=144.9
Q ss_pred EEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe-CCCCEEEEeecCceEEEEEc
Q 040987 398 LYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN-HDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 398 ~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~d~ 475 (762)
.+++|.+ ++.++++-...+.|+.|+..++.....-. .....+++. ++++ ++++...+ +.++|.
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~-------------~~~~G~~~~~~~g~-l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL-------------PGPNGMAFDRPDGR-LYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES-------------SSEEEEEEECTTSE-EEEEETTC-EEEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec-------------CCCceEEEEccCCE-EEEEEcCc-eEEEec
Confidence 3577887 56666665568899999998876543222 225778888 6654 45544544 566698
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.+++...........+ .....+.+++.|+|++.++.......... ..+.|..++.. ++....... -
T Consensus 68 ~~g~~~~~~~~~~~~~-----~~~~~ND~~vd~~G~ly~t~~~~~~~~~~-~~g~v~~~~~~-~~~~~~~~~-------~ 133 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGV-----PFNRPNDVAVDPDGNLYVTDSGGGGASGI-DPGSVYRIDPD-GKVTVVADG-------L 133 (246)
T ss_dssp TTTEEEEEEEEETTCS-----CTEEEEEEEE-TTS-EEEEEECCBCTTCG-GSEEEEEEETT-SEEEEEEEE-------E
T ss_pred CCCcEEEEeeccCCCc-----ccCCCceEEEcCCCCEEEEecCCCccccc-cccceEEECCC-CeEEEEecC-------c
Confidence 8875443333321110 15778999999999977766522111100 11667777776 332222211 3
Q ss_pred CceEEEEEcCCCCeEE-EEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEE
Q 040987 556 AGISAVAFHPNRRAAV-SSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~-~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~ 632 (762)
...+.++|+||++.|+ +-+..+.|..+++..... ..... .........+..-.+++..+|++.++.. .+.|.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~-----~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~ 208 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRR-----VFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIV 208 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEE-----EEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEE
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeee-----eEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEE
Confidence 3567999999998776 455677888888864332 11100 0011111223477899999998777665 89999
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEE
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATS 668 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~ 668 (762)
++|.+ |+.+..+......+++++|. +|.+.|+..+
T Consensus 209 ~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 99998 88888887665689999995 5666666544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-07 Score=86.77 Aligned_cols=247 Identities=14% Similarity=0.158 Sum_probs=158.5
Q ss_pred CCCeEEEEeCC-CCCeEEEEecCC-cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----c
Q 040987 394 GSPLLYFTESP-DPSLSSISCADN-QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-----E 466 (762)
Q Consensus 394 ~~~v~~~~~s~-~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~ 466 (762)
+.....++.+| ++..++++-.-| ...+||..+++....+...... ...-.-+|++||++|++.- .
T Consensus 4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gR--------HFyGHg~fs~dG~~LytTEnd~~~g 75 (305)
T PF07433_consen 4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGR--------HFYGHGVFSPDGRLLYTTENDYETG 75 (305)
T ss_pred CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCC--------EEecCEEEcCCCCEEEEeccccCCC
Confidence 34456678888 455666666655 5789999999988877654311 1223578999999998864 3
Q ss_pred CceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc---C------CCceeEEEEEEe
Q 040987 467 NYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE---G------IGSLVCLKFWVS 536 (762)
Q Consensus 467 dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~---~------~~~d~~i~iwd~ 536 (762)
.|.|-+||.. +.+.+.++... .-....+.+.|||+.|+++...+.-. + ..-+.++...|.
T Consensus 76 ~G~IgVyd~~~~~~ri~E~~s~----------GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~ 145 (305)
T PF07433_consen 76 RGVIGVYDAARGYRRIGEFPSH----------GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA 145 (305)
T ss_pred cEEEEEEECcCCcEEEeEecCC----------CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec
Confidence 4899999998 44444444332 33356788999998888875322111 0 002345666777
Q ss_pred cCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc-------EEEEEcccccccccccCCceeeeeecccCCC
Q 040987 537 GTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD-------FKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 537 ~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~-------i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.+++.+.+... ...-| ...|+-+++.++|..++..-..|. +.+++....-.....+...| ..-..
T Consensus 146 ~sG~ll~q~~L-p~~~~-~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~------~~l~~ 217 (305)
T PF07433_consen 146 RSGALLEQVEL-PPDLH-QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQW------RRLNG 217 (305)
T ss_pred CCCceeeeeec-Ccccc-ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHH------HhhCC
Confidence 77776544321 00224 778999999999877665544332 33443332211111111111 12357
Q ss_pred CeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 610 AMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.+-+++++++|.++++.+ .+.+.+||..+++++....- ..+..++-.+++ +++|.+.
T Consensus 218 Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 218 YIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred ceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC
Confidence 889999999999998887 79999999999999877642 346777777777 5665554
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.7e-09 Score=106.38 Aligned_cols=298 Identities=11% Similarity=0.124 Sum_probs=194.5
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc--EEEEeecCCeEEEEec
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR--IVAAGDVTGRILIWRG 310 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~l~~~~~dg~v~vw~~ 310 (762)
.-.+++.++.++|.|+-+|.+....+.+.|+...-.. .+-+.....-.|-...|+|... +-++......-.+|++
T Consensus 22 ~v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~p---pr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnl 98 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTP---PRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNL 98 (1081)
T ss_pred EecCcccceeeccccchhhhhhhcCeEEEeccCCCCC---ceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhh
Confidence 3467888999999999999777777888888765542 1111111122466778887543 3344444555678987
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceec
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKF 389 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~ 389 (762)
.... +...-..+.+|...|+.+.|.|.. ..+++++.|-.+..||+++...-.
T Consensus 99 A~ss---------------------------~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ 151 (1081)
T KOG0309|consen 99 AKSS---------------------------SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF 151 (1081)
T ss_pred hcCC---------------------------ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce
Confidence 4331 112336788999999999998864 578899999999999999866522
Q ss_pred --cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEee
Q 040987 390 --LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRA 465 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~ 465 (762)
...-......+.|+.....+.+.+..+.|.+||.+. +.++..+++|. ..+..++|..- ...+.+.+
T Consensus 152 ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~v----------s~vn~~~fnr~~~s~~~s~~ 221 (1081)
T KOG0309|consen 152 YSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHV----------SSVNSIDFNRFKYSEIMSSS 221 (1081)
T ss_pred eeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccc----------eeeehHHHhhhhhhhhcccC
Confidence 222344567788987665666667888999999987 45677777765 66777777652 33577888
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF-- 543 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-- 543 (762)
.|++|++||.............. ..++..-.+.|=|+-..+.-+. ++..+.+++.+.....+
T Consensus 222 ~d~tvkfw~y~kSt~e~~~~vtt---------~~piw~~r~~Pfg~g~~~mp~~-------G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 222 NDGTVKFWDYSKSTTESKRTVTT---------NFPIWRGRYLPFGEGYCIMPMV-------GGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred CCCceeeecccccccccceeccc---------cCcceeccccccCceeEecccc-------CCeeeeeccccchhhhhcc
Confidence 99999999987654332221111 3456666666655433332211 34455555554332211
Q ss_pred ---EEEEEeecCCCCCceEEEEEcCCCC----------eEEEEeCCCcEEEEEcccc
Q 040987 544 ---TLSTIVYEPHRDAGISAVAFHPNRR----------AAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 544 ---~~~~~~~~~h~~~~v~~~~~spd~~----------~l~~~~~dg~i~iwd~~~~ 587 (762)
......+.|| ...|....|-..+. .|++-+.|.++++|-+.+.
T Consensus 286 ~~~~~pVh~F~GH-~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGH-DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred ccCCcceeeecCc-chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 1111235788 88887777754322 5999999999999988653
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.6e-07 Score=92.99 Aligned_cols=269 Identities=10% Similarity=0.045 Sum_probs=159.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
+..++.++.++.++.+|.++|+..........+.+ ... .+..++++..++.+..+|..+|+.+............
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~-- 195 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL-- 195 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc--
Confidence 45677788889999999999998655444443322 111 2446667778999999999999998887643210000
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~ 521 (762)
....+.... +..++.++.+|.+..+|..+++...+........... ......+..+| .+..+..++
T Consensus 196 ---~~~~sP~v~--~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~---~~~~~~~~~sP~v~~~~vy~~~---- 263 (394)
T PRK11138 196 ---RGESAPATA--FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATE---IDRLVDVDTTPVVVGGVVYALA---- 263 (394)
T ss_pred ---cCCCCCEEE--CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccc---hhcccccCCCcEEECCEEEEEE----
Confidence 000111222 2357777888999999999988766543211100000 00011111122 234555555
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
.++.+..+|..+++..+.... + ....+.. ++..++.++.+|.+..+|..+++.+-..+
T Consensus 264 -----~~g~l~ald~~tG~~~W~~~~----~----~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~------- 321 (394)
T PRK11138 264 -----YNGNLVALDLRSGQIVWKREY----G----SVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQS------- 321 (394)
T ss_pred -----cCCeEEEEECCCCCEEEeecC----C----CccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEccc-------
Confidence 678999999999987765431 1 1112222 45677778889999999998886543221
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE-EEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN-MSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.. ......+... -++ .|.+++ ||.+++.|..+|+.+...+-....+.+ ..+ .+..|+.++.||. |+.++
T Consensus 322 ~~---~~~~~~sp~v-~~g-~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~--l~~~~ 392 (394)
T PRK11138 322 DL---LHRLLTAPVL-YNG-YLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGT--VYAIT 392 (394)
T ss_pred cc---CCCcccCCEE-ECC-EEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCce--EEEEe
Confidence 00 0111122222 144 555565 999999999999988776543333332 222 2447888899987 87765
Q ss_pred C
Q 040987 680 M 680 (762)
Q Consensus 680 ~ 680 (762)
.
T Consensus 393 ~ 393 (394)
T PRK11138 393 R 393 (394)
T ss_pred C
Confidence 4
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.3e-09 Score=115.20 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=169.8
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
++...-|..+.+. +....+-..+.++.-+|...+.++|+.||.+++|.-..++.+..+..... ..++.+.
T Consensus 2189 ~~~~~tq~~~~~~-~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~---------s~vtr~~ 2258 (2439)
T KOG1064|consen 2189 PWLGSTQTSRGAS-VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN---------SRVTRSR 2258 (2439)
T ss_pred Cccccceecccce-eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc---------chhhhhh
Confidence 3444444433222 22334445678888889889999999999999999988887777654331 5788999
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
|+.+|+....+..||.+.+|.... +..... +.| .....++.|-. ..+++++. ...++.+.+
T Consensus 2259 f~~qGnk~~i~d~dg~l~l~q~~p-k~~~s~----qch------nk~~~Df~Fi~--s~~~tag~------s~d~~n~~l 2319 (2439)
T KOG1064|consen 2259 FNHQGNKFGIVDGDGDLSLWQASP-KPYTSW----QCH------NKALSDFRFIG--SLLATAGR------SSDNRNVCL 2319 (2439)
T ss_pred hcccCCceeeeccCCceeecccCC-cceecc----ccC------Cccccceeeee--hhhhcccc------CCCCCcccc
Confidence 999999999999999999999872 222211 222 44456666654 55566542 126789999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
||.--.....-+. ..| .+.++++++-|..++|++|+.+|.|++||++..+.+..++
T Consensus 2320 wDtl~~~~~s~v~----~~H-~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~------------------- 2375 (2439)
T KOG1064|consen 2320 WDTLLPPMNSLVH----TCH-DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ------------------- 2375 (2439)
T ss_pred hhcccCcccceee----eec-CCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh-------------------
Confidence 9976554443333 578 8899999999999999999999999999999888877663
Q ss_pred EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-c--cCc---eeEEEEeCCCCEEEEEEcCC
Q 040987 614 AAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-T--LTP---IMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 614 ~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~--~~~---v~~~~~s~dg~~l~s~~~d~ 671 (762)
++. ...++.+|+ .|.++||++..-.++..+.. | .+- +..-.+...+.+|.+|+.|+
T Consensus 2376 -~~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~ 2438 (2439)
T KOG1064|consen 2376 -ALD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADG 2438 (2439)
T ss_pred -hhh-hhheeeccCcccceEEEEccccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCC
Confidence 133 456888888 99999999998776665532 1 110 11112223456677777776
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-07 Score=95.10 Aligned_cols=303 Identities=12% Similarity=0.050 Sum_probs=172.5
Q ss_pred CCEEEEEe-CCEEEEEEcccceEEeeecCCcc----------cee-EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 85 VKRLLVCT-SNTVSIFSTSTGLQISSLEGHKA----------PVT-TVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 85 g~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~----------~V~-~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
+..+.++. ++.+.-+|.++|+.+-+.+-... .+. .+.. .++ .++.++.++.+.-+|.++
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v-~~~--------~v~v~~~~g~l~ald~~t 139 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV-AGG--------KVYIGSEKGQVYALNAED 139 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE-ECC--------EEEEEcCCCEEEEEECCC
Confidence 33444444 68999999999998866542210 010 0111 123 344677889999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
|+.+-+.+...++.+... -.++ .. +.++.++.+..+|.++|+.+-....
T Consensus 140 G~~~W~~~~~~~~~ssP~--------v~~~-----~v------------------~v~~~~g~l~ald~~tG~~~W~~~~ 188 (394)
T PRK11138 140 GEVAWQTKVAGEALSRPV--------VSDG-----LV------------------LVHTSNGMLQALNESDGAVKWTVNL 188 (394)
T ss_pred CCCcccccCCCceecCCE--------EECC-----EE------------------EEECCCCEEEEEEccCCCEeeeecC
Confidence 998887765443221100 0011 11 3345678999999999998843332
Q ss_pred ccCC----CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-cC-cCeEEEEEcC--CCcEEEEeecCCe
Q 040987 233 AEMK----EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-HT-KKLTVLAFHP--TQRIVAAGDVTGR 304 (762)
Q Consensus 233 ~~~~----~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~v~~~~~sp--~~~~l~~~~~dg~ 304 (762)
.... ........ ++..++...++.+..+|..+++...........+ +. .....+.-+| .+..++.++.+|.
T Consensus 189 ~~~~~~~~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~ 267 (394)
T PRK11138 189 DVPSLTLRGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGN 267 (394)
T ss_pred CCCcccccCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCe
Confidence 2110 00111111 3445556678899999999887641110000000 00 0011111222 2446667778999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
+..+|..+++..-.. .......+. .++..++.++.++.+..+|..+
T Consensus 268 l~ald~~tG~~~W~~--------------------------------~~~~~~~~~--~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 268 LVALDLRSGQIVWKR--------------------------------EYGSVNDFA--VDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred EEEEECCCCCEEEee--------------------------------cCCCccCcE--EECCEEEEEcCCCeEEEEECCC
Confidence 999999877543210 001111122 2456788888899999999999
Q ss_pred CceeccCC-CCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 385 GKKKFLPR-IGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 385 ~~~~~~~~-~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
++.+.... ... ...+... .+..+++++.+|.+..+|..+|+.+...+-... .......+. +..|+
T Consensus 314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~---------~~~s~P~~~--~~~l~ 380 (394)
T PRK11138 314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS---------GFLSEPVVA--DDKLL 380 (394)
T ss_pred CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---------cceeCCEEE--CCEEE
Confidence 98754222 111 1122222 256778888999999999999998877653221 111122222 44788
Q ss_pred EeecCceEEEEEc
Q 040987 463 LRAENYCIHFYSL 475 (762)
Q Consensus 463 ~~~~dg~i~i~d~ 475 (762)
+++.+|.|+.++.
T Consensus 381 v~t~~G~l~~~~~ 393 (394)
T PRK11138 381 IQARDGTVYAITR 393 (394)
T ss_pred EEeCCceEEEEeC
Confidence 8899999988764
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-06 Score=80.91 Aligned_cols=285 Identities=18% Similarity=0.135 Sum_probs=169.4
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCceEEEEEccCCCCCCCCCc
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEE 444 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 444 (762)
+.++++|.++++.+-..... -.-.+..+||++.++++. ....|.+||..+......+.-...+...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g-~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~--- 92 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG-FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ--- 92 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE-SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-----
T ss_pred ceEEEEECCCCcEEEEeecc-cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe---
Confidence 47888898888764322211 123467899999988753 2346999999998887765433210000
Q ss_pred ccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
.-.....++++.|++++++.. --..|.+.|+...+.+.++... +...-.- +++ +.+.+.+
T Consensus 93 ~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P-----------GC~~iyP-~~~-~~F~~lC----- 154 (342)
T PF06433_consen 93 VVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP-----------GCWLIYP-SGN-RGFSMLC----- 154 (342)
T ss_dssp BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT-----------SEEEEEE-EET-TEEEEEE-----
T ss_pred ecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC-----------CEEEEEe-cCC-CceEEEe-----
Confidence 002335678999999887764 3467999999998887776542 1121111 222 3455555
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce-EEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-SAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v-~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
+||.+.-..+..........+..+... ...+ ..-+++..+..++..+.+|.|+--|+......... .|...
T Consensus 155 ----~DGsl~~v~Ld~~Gk~~~~~t~~F~~~-~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~---~~~~~ 226 (342)
T PF06433_consen 155 ----GDGSLLTVTLDADGKEAQKSTKVFDPD-DDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK---PWSLL 226 (342)
T ss_dssp ----TTSCEEEEEETSTSSEEEEEEEESSTT-TS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE---EEESS
T ss_pred ----cCCceEEEEECCCCCEeEeeccccCCC-CcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC---ccccc
Confidence 788999988884444333333344443 3332 34455666666777888999988888765432221 22211
Q ss_pred eec----ccCCCCeEEEEEcCCCcEEEEE-------c--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC-EEE
Q 040987 602 AVG----SYKKKAMTAAAFSADGSVLAVA-------A--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE-YLV 665 (762)
Q Consensus 602 ~~~----~~~~~~i~~~~~s~dg~~la~~-------~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~-~l~ 665 (762)
... .-..+.-.-+++++..+.|.+- + | ..|.++|+++++.+..+.. ..++.++..+.|.+ +|+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEE
Confidence 000 0012344457888766555442 1 2 2588889999999999863 34688999999876 555
Q ss_pred EEE-cCCCCeEEEEECCCCceeeEEEEe
Q 040987 666 ATS-WGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 666 s~~-~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+.+ .++. |.+||..+|+++.++..-
T Consensus 306 ~~~~~~~~--l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 306 ALSAGDGT--LDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTE--EEEEETTT--EEEEE---
T ss_pred EEcCCCCe--EEEEeCcCCcEEeehhcc
Confidence 554 3565 999999999999877644
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.5e-07 Score=95.61 Aligned_cols=245 Identities=11% Similarity=0.057 Sum_probs=151.9
Q ss_pred CCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc--CCCcEEEEeecCCeEEEEeccCCceeeccc
Q 040987 245 SSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH--PTQRIVAAGDVTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 245 pdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 320 (762)
-||++|..- .+..|...+++..++. ++.. ......+..++|. |+..+++.++...
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~--~i~~--iPn~~~~Hg~~~~~~p~t~yv~~~~e~~----------------- 197 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCD--KITE--LPNVQGIHGLRPQKIPRTGYVFCNGEFR----------------- 197 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeec--eeEe--CCCccCccccCccccCCccEEEeCcccc-----------------
Confidence 478888765 3577777788777754 2212 2344566667765 6777777664321
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCCCCCCeEE
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRIGSPLLY 399 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~v~~ 399 (762)
+=++|||+.+...+ ..+.+.+.|.++.+.......+.....
T Consensus 198 --------------------------------------~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~ 239 (635)
T PRK02888 198 --------------------------------------IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDN 239 (635)
T ss_pred --------------------------------------cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCccc
Confidence 12345555443322 235677778887666554444556677
Q ss_pred EEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 400 FTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
+.++++|+++++.+.+ ..+...+.........+... ...++.++|++... .++.|.+.|.
T Consensus 240 v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~--------------~iea~vkdGK~~~V--~gn~V~VID~ 303 (635)
T PRK02888 240 VDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA--------------RIEEAVKAGKFKTI--GGSKVPVVDG 303 (635)
T ss_pred ceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH--------------HHHHhhhCCCEEEE--CCCEEEEEEC
Confidence 8999999999888632 23333333322222222110 01134557887666 3678999999
Q ss_pred CC-----CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee-------
Q 040987 476 LD-----DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF------- 543 (762)
Q Consensus 476 ~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~------- 543 (762)
.+ ...+..+.. ......++++|||+++++++. .+.++.+.|+.+.+...
T Consensus 304 ~t~~~~~~~v~~yIPV-----------GKsPHGV~vSPDGkylyVank--------lS~tVSVIDv~k~k~~~~~~~~~~ 364 (635)
T PRK02888 304 RKAANAGSALTRYVPV-----------PKNPHGVNTSPDGKYFIANGK--------LSPTVTVIDVRKLDDLFDGKIKPR 364 (635)
T ss_pred CccccCCcceEEEEEC-----------CCCccceEECCCCCEEEEeCC--------CCCcEEEEEChhhhhhhhccCCcc
Confidence 87 344444444 344678999999999999874 68899999998755311
Q ss_pred -EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 544 -TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 544 -~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.+...+.. ...-...+|.++|+...+..-|..|..||+..
T Consensus 365 ~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 365 DAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 11111111 12334578999999888888899999999976
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.1e-09 Score=103.04 Aligned_cols=288 Identities=14% Similarity=0.123 Sum_probs=172.9
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc-------cceEEeeecCCccceeEEEEeCCCCcccceeee
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS-------TGLQISSLEGHKAPVTTVIVVPASTPATKILSY 135 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~-------~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~ 135 (762)
....+.||++.|.. ++--.+.+-+++++ |++|++|.++ |..+..+++.|..+|..+.|..+- ++
T Consensus 727 rL~nf~GH~~~iRa-i~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-------r~ 798 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRA-IAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-------RS 798 (1034)
T ss_pred eeecccCcHHHhHH-HHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-------ce
Confidence 33456899999997 54444444555555 8999999985 334778899999999999999998 56
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcccc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGR 215 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 215 (762)
+++ -|+.|.+||.--|+.+......
T Consensus 799 i~S--cD~giHlWDPFigr~Laq~~da----------------------------------------------------- 823 (1034)
T KOG4190|consen 799 IAS--CDGGIHLWDPFIGRLLAQMEDA----------------------------------------------------- 823 (1034)
T ss_pred eee--ccCcceeecccccchhHhhhcC-----------------------------------------------------
Confidence 554 4799999998777665433210
Q ss_pred EEEEecCCccccceeeeccCCCceEEEECC--CCCEE-EE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 216 ICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYF-GI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 216 i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~l-a~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
.+ .+.+..+..-| |...+ |. +...+|+++|....+...........+..+.+.+++..+
T Consensus 824 -----pk------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~ 886 (1034)
T KOG4190|consen 824 -----PK------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD 886 (1034)
T ss_pred -----cc------------cCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence 00 01111111112 23333 33 357889999988777541111122234456789999999
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
.|+++|++-.+|.|.+.|.+++..+. .++...-....++ .|..+.|+..
T Consensus 887 ~GN~lAa~LSnGci~~LDaR~G~vIN------------------------------swrpmecdllqla-apsdq~L~~s 935 (1034)
T KOG4190|consen 887 KGNKLAAALSNGCIAILDARNGKVIN------------------------------SWRPMECDLLQLA-APSDQALAQS 935 (1034)
T ss_pred CcchhhHHhcCCcEEEEecCCCceec------------------------------cCCcccchhhhhc-CchhHHHHhh
Confidence 99999999999999999998885442 2222222222222 2444566766
Q ss_pred ecCCeEEE-EecCCCceeccCC-CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC----ceEEEEEccCCCCCCCCCcc
Q 040987 372 GKEGVLVV-WQLDTGKKKFLPR-IGSPLLYFTESPDPSLSSISCADNQVHLLKMPS----MEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 372 ~~dg~i~~-wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~ 445 (762)
..|.++.+ |..-.+....... .+.+..-+ ..-|..++++...+.+.+|.-.. ...+..+... ..
T Consensus 936 aldHslaVnWhaldgimh~q~kpppepahfl--qsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d--------~f 1005 (1034)
T KOG4190|consen 936 ALDHSLAVNWHALDGIMHLQDKPPPEPAHFL--QSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPD--------EF 1005 (1034)
T ss_pred cccceeEeeehhcCCeeeeccCCCCcchhhh--hccCceeEEeccCcEEEEEecchhhhhhhhhcccccc--------cc
Confidence 67778887 8766555432211 11111111 11244566665555666664321 1111122211 12
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEE
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHF 472 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i 472 (762)
.+..++++.-|-+.-++.|.+.|.|.+
T Consensus 1006 ~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1006 PGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred CCccceeeeccccchhhccCCCCceee
Confidence 366788888887777777888887765
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.4e-06 Score=85.11 Aligned_cols=283 Identities=14% Similarity=0.095 Sum_probs=159.3
Q ss_pred ecCCCEEEEEe---------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 362 SSDGAYLYSGG---------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 362 s~~g~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
|||+++++... ..+.+.++|+.+++...+......+....|||+|+.++.. .++.|.+++..++...+..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~lT 79 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQLT 79 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEESE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCCccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEec
Confidence 57887777632 2367999999999887766667788999999999999988 6789999999887555433
Q ss_pred ccCCCCC--CCCC-----cccCceeeEEEeCCCCEEEEeecC-c-----------------------------------e
Q 040987 433 SGIKLPC--PLPE-----EYKGLCRDIAFNHDGGLVALRAEN-Y-----------------------------------C 469 (762)
Q Consensus 433 ~~~~~~~--~~~~-----~~~~~v~~~~~s~~~~~l~~~~~d-g-----------------------------------~ 469 (762)
......+ ..++ .--+.-..+-||||+++|+....| . .
T Consensus 80 ~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~ 159 (353)
T PF00930_consen 80 TDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVS 159 (353)
T ss_dssp S--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEE
T ss_pred cccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceE
Confidence 3221100 0000 000223678999999999876433 1 1
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.++|+.+++.. .+.... . .......+..+.|.++++.|+..-. ++......+.+.|..++.........
T Consensus 160 l~v~~~~~~~~~-~~~~~~-~---~~~~~~yl~~v~W~~d~~~l~~~~~----nR~q~~~~l~~~d~~tg~~~~~~~e~- 229 (353)
T PF00930_consen 160 LFVVDLASGKTT-ELDPPN-S---LNPQDYYLTRVGWSPDGKRLWVQWL----NRDQNRLDLVLCDASTGETRVVLEET- 229 (353)
T ss_dssp EEEEESSSTCCC-EE---H-H---HHTSSEEEEEEEEEETTEEEEEEEE----ETTSTEEEEEEEEECTTTCEEEEEEE-
T ss_pred EEEEECCCCcEE-Eeeecc-c---cCCCccCcccceecCCCcEEEEEEc----ccCCCEEEEEEEECCCCceeEEEEec-
Confidence 223344333221 111110 0 0012567899999999994444432 12224567888898887665444321
Q ss_pred ecCCCCCceEEEEEc-CCCCe-EEEEeCCCc--EEEEEcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEE
Q 040987 550 YEPHRDAGISAVAFH-PNRRA-AVSSSYGGD--FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLA 624 (762)
Q Consensus 550 ~~~h~~~~v~~~~~s-pd~~~-l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la 624 (762)
..+- -..-....|. +++.. +.....+|- |.+++..++...... ...-.|+ -+.++++++.|.
T Consensus 230 ~~~W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT------------~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 230 SDGW-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT------------SGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp SSSS-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-------------SSS-EEEEEEEECTSSEEE
T ss_pred CCcc-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc------------cCceeecccceEcCCCCEEE
Confidence 1111 1222355554 65554 444556665 555566655533222 2344554 477888887665
Q ss_pred -EEc-C----CeEEEEeCC-CCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 625 -VAA-E----TVITLWDPD-RNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 625 -~~~-d----~~i~iwd~~-~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
++. + ..|+.-+++ .++. ..|.........+.|||||++++-...
T Consensus 297 f~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 297 FTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred EEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCCCEEEEEEc
Confidence 343 2 356666777 4444 455433333368999999999886543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=96.79 Aligned_cols=165 Identities=14% Similarity=0.105 Sum_probs=112.5
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee-EEEEEeecCCCCCceEEEEEcCCCCeEEEEe---C
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF-TLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---Y 575 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~ 575 (762)
....+..+++++++|++. .+....++++....... .+..... ...-+++.|..+......+. .
T Consensus 64 a~~~~~~s~~~~llAv~~---------~~K~~~~f~~~~~~~~~kl~~~~~v----~~~~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVAT---------SSKQRAVFDYRENPKGAKLLDVSCV----PKRPTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred cccccccCCCceEEEEEe---------CCCceEEEEEecCCCcceeeeEeec----ccCcceeeeeeccceEEEEeecCC
Confidence 345567788899999987 66676677776655411 1222111 11223344444444444333 3
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-eccccCcee
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV-IGETLTPIM 653 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~-l~~~~~~v~ 653 (762)
...+.+|....+.....+ +|-..++.++||||+++|+++. |..|+|-....--.+.. +-||..-|.
T Consensus 131 ~~~~di~s~~~~~~~~~l------------GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS 198 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPIL------------GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVS 198 (390)
T ss_pred ceeeeeecccccCcchhh------------hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhee
Confidence 344555555544444333 6889999999999999999999 99999988765544443 347999999
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
.++.-++ ..|+++|.|++ |++||+.+|+.+..+...
T Consensus 199 ~isl~~~-~~LlS~sGD~t--lr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 199 TISLTDN-YLLLSGSGDKT--LRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eeeeccC-ceeeecCCCCc--EEEEecccCCcccccchh
Confidence 9999875 56999999998 999999999988665544
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-07 Score=83.41 Aligned_cols=246 Identities=9% Similarity=0.025 Sum_probs=155.2
Q ss_pred CCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
..+|+.|+..|...+|...+.+... ...+...|.-+.-..| ...+..++.|.++++.++..+.....+....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~----- 158 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN----- 158 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc-----
Confidence 3578899899999999988765421 1222222211111111 2235566788888888877543332222111
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
-.+.++++++|++++++.++...|..|.+........-. ..... .+.-.+..|+.....+|++.
T Consensus 159 -----~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t------~D~gF~~S~s~~~~~FAv~~---- 222 (344)
T KOG4532|consen 159 -----LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPT------SDHGFYNSFSENDLQFAVVF---- 222 (344)
T ss_pred -----cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-Eeccc------CCCceeeeeccCcceEEEEe----
Confidence 136789999999999999999999999987654322211 11111 33456788999999999999
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|+++.|||++....+....... .+|+.+.++.+.|++.|. +|...-.-+.+.+-|+++......+...
T Consensus 223 -----Qdg~~~I~DVR~~~tpm~~~sst-rp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~--- 293 (344)
T KOG4532|consen 223 -----QDGTCAIYDVRNMATPMAEISST-RPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIP--- 293 (344)
T ss_pred -----cCCcEEEEEecccccchhhhccc-CCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecC---
Confidence 89999999999776554443332 344499999999998664 4555544577899999887655443100
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCe
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNV 640 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~ 640 (762)
...........|..-.|+.++.-+.+.+.-.+.-|++.+..
T Consensus 294 ~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~~ae~ni~srs 334 (344)
T KOG4532|consen 294 DDVERKHNTQHIFGTNFNNENESNDVKNELQGAEYNILSRS 334 (344)
T ss_pred ccccccccccccccccccCCCcccccccchhhheeeccccc
Confidence 00001112244777788888777777765556666666543
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-08 Score=93.26 Aligned_cols=167 Identities=11% Similarity=0.132 Sum_probs=115.3
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
....+..++.++++|++..+....+++........++....-. ....+.+.|..+......+. ..|.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-------~~~~~ai~~~~~~~sv~v~d------kagD 130 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-------PKRPTAISFIREDTSVLVAD------KAGD 130 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-------ccCcceeeeeeccceEEEEe------ecCC
Confidence 3455667888999999988888777777655431221111000 22234555555555555544 1125
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
...+.+|....+..... .|| -..++.++|+||+++++++..|..|++-.+...-.+..+ .-+|
T Consensus 131 ~~~~di~s~~~~~~~~~------lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf----------clGH 193 (390)
T KOG3914|consen 131 VYSFDILSADSGRCEPI------LGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF----------CLGH 193 (390)
T ss_pred ceeeeeecccccCcchh------hhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh----------cccc
Confidence 56677777665433322 588 889999999999999999999999999887765555444 3478
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l 645 (762)
..-|..++.-++. .|++++ |++|++||+.+|+++.++
T Consensus 194 ~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 194 KEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred HhheeeeeeccCc-eeeecCCCCcEEEEecccCCccccc
Confidence 9999999997654 467776 999999999999887665
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-08 Score=112.57 Aligned_cols=198 Identities=14% Similarity=0.121 Sum_probs=151.3
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+-..|.++.-+|...+-++|+.||.+++|....++.+.. ......++.+.|+.+|+.+..+..||.+.+|... .+
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-Cc
Confidence 33455677777778778899999999999999988887543 2334788999999999999999999999999988 44
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+....+.|. ....++.|-. ..+++++ .++.+.+||..-.....-+. .. |...++++
T Consensus 2284 ~~~s~qchn----------k~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~---~~------H~~gaT~l 2342 (2439)
T KOG1064|consen 2284 PYTSWQCHN----------KALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH---TC------HDGGATVL 2342 (2439)
T ss_pred ceeccccCC----------ccccceeeee--hhhhccccCCCCCcccchhcccCcccceee---ee------cCCCceEE
Confidence 555555554 5566777765 4566654 56889999976443333322 22 26779999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
++-|..+.|++|+ .+|.|++||++..+.+..++. +. ...++++++..|.++||++
T Consensus 2343 ~~~P~~qllisgg---------r~G~v~l~D~rqrql~h~~~~---------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2343 AYAPKHQLLISGG---------RKGEVCLFDIRQRQLRHTFQA---------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred EEcCcceEEEecC---------CcCcEEEeehHHHHHHHHhhh---------------hh-hhheeeccCcccceEEEEc
Confidence 9999999999999 899999999998776554421 33 5678999999999999999
Q ss_pred cccccccccc
Q 040987 585 NDELQQKDLQ 594 (762)
Q Consensus 585 ~~~~~~~~~~ 594 (762)
.....+..++
T Consensus 2398 s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2398 SEFGLLHTFP 2407 (2439)
T ss_pred cccchhhcCc
Confidence 9887777664
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.2e-06 Score=82.63 Aligned_cols=230 Identities=11% Similarity=-0.006 Sum_probs=140.7
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
+|.|..+|..+|+.+....-... . ...... ..+++..+++++.++.++.||..+++.+.+........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~-~-------~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~--- 69 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPG-I-------GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS--- 69 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSS-C-------SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG---
T ss_pred CCEEEEEECCCCCEEEEEECCCC-C-------CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc---
Confidence 67899999999999888754210 0 111111 33356678887899999999999998887776522211
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
.. . ..++..++++. .++.+..+|..+++..+.......... ..........++..++.+.
T Consensus 70 ----~~----~-~~~~~~v~v~~---------~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 129 (238)
T PF13360_consen 70 ----GA----P-VVDGGRVYVGT---------SDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGT 129 (238)
T ss_dssp ----SG----E-EEETTEEEEEE---------TTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEE
T ss_pred ----ce----e-eeccccccccc---------ceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEe
Confidence 11 1 22344445554 567999999999998887432111111 1112222333377888888
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCC------CCeEEEEEcCCCcEEEEEcCCe-EEEEeCCCCeEEEEecc
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKK------KAMTAAAFSADGSVLAVAAETV-ITLWDPDRNVLVAVIGE 647 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~~~s~dg~~la~~~d~~-i~iwd~~~~~~~~~l~~ 647 (762)
.++.+..+|..+|+.+-..+ ....... ..+..-....++..+++..++. +.+ |+.+++.+-...
T Consensus 130 ~~g~l~~~d~~tG~~~w~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~- 200 (238)
T PF13360_consen 130 SSGKLVALDPKTGKLLWKYP-------VGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKP- 200 (238)
T ss_dssp TCSEEEEEETTTTEEEEEEE-------SSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEEC-
T ss_pred ccCcEEEEecCCCcEEEEee-------cCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEec-
Confidence 89999999999998754442 1000000 1122222223554444444775 555 999998664332
Q ss_pred ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 648 TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
...+.. ....++..|+.++.++. |..||+.+|+..|.+
T Consensus 201 -~~~~~~-~~~~~~~~l~~~~~~~~--l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 201 -ISGIYS-LPSVDGGTLYVTSSDGR--LYALDLKTGKVVWQQ 238 (238)
T ss_dssp -SS-ECE-CEECCCTEEEEEETTTE--EEEEETTTTEEEEEE
T ss_pred -CCCccC-CceeeCCEEEEEeCCCE--EEEEECCCCCEEeEC
Confidence 222332 24567888888888877 999999999999864
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.3e-06 Score=80.03 Aligned_cols=285 Identities=16% Similarity=0.132 Sum_probs=158.0
Q ss_pred CeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC-----------CEEEEEEcccceEEeeec--C-Cc----
Q 040987 53 GLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS-----------NTVSIFSTSTGLQISSLE--G-HK---- 114 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~-----------~~i~iwd~~~~~~~~~l~--~-h~---- 114 (762)
+.+.++|..+++.+-... .+.... +.+||||+.+.+++- -.|.+||.+|-.+...+. + |.
T Consensus 17 ~rv~viD~d~~k~lGmi~-~g~~~~-~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-TGFLGN-VALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-EESSEE-EEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEee-cccCCc-eeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 578899988877653311 112222 678999999987641 389999999987776442 1 11
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEee
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVE 194 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (762)
.....+++|.|| |.+ ++.-.+-...|.|-|+..++.+.++....
T Consensus 95 ~~~~~~~ls~dg----k~~-~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------------------------------- 138 (342)
T PF06433_consen 95 PYKNMFALSADG----KFL-YVQNFTPATSVTVVDLAAKKVVGEIDTPG------------------------------- 138 (342)
T ss_dssp --GGGEEE-TTS----SEE-EEEEESSSEEEEEEETTTTEEEEEEEGTS-------------------------------
T ss_pred ccccceEEccCC----cEE-EEEccCCCCeEEEEECCCCceeeeecCCC-------------------------------
Confidence 223456888998 444 55556667789999999988887765432
Q ss_pred eccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee
Q 040987 195 DTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR 274 (762)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~ 274 (762)
+..+| =+++..+.+.|.||.+.-..+...........
T Consensus 139 --------------------C~~iy-----------------------P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 139 --------------------CWLIY-----------------------PSGNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp --------------------EEEEE-----------------------EEETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred --------------------EEEEE-----------------------ecCCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 00000 01112233455555555555552222111111
Q ss_pred eeeeccCcCeE-EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLT-VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~-~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.++....+++. .-+++..+..++.-+.+|.|+--|+.+........... ..+.+ +.-.+..
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~----------------~t~~e--~~~~WrP 237 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSL----------------LTDAE--KADGWRP 237 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEES----------------S-HHH--HHTTEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccc----------------cCccc--cccCcCC
Confidence 22222223332 44555555556656788888888886654221000000 00000 0001122
Q ss_pred cceeEEEEecCCCEEEEEec---C-------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCC-eEEEEe-cCCcEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK---E-------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS-LSSISC-ADNQVHLL 421 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~---d-------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~d~~i~i~ 421 (762)
+.-.-+++++..++|+..-. + ..|.++|+.+++.+.......++.++..+.+.+ +|++.+ .++.+.+|
T Consensus 238 GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~ 317 (342)
T PF06433_consen 238 GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVY 317 (342)
T ss_dssp -SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEE
T ss_pred cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEE
Confidence 33445677776666665321 1 248888999999887666667788999998876 444433 47899999
Q ss_pred EcCCceEEEEEccCC
Q 040987 422 KMPSMEIIRSISGIK 436 (762)
Q Consensus 422 d~~~~~~~~~~~~~~ 436 (762)
|..+|+.++.+.+..
T Consensus 318 D~~tGk~~~~~~~lG 332 (342)
T PF06433_consen 318 DAATGKLVRSIEQLG 332 (342)
T ss_dssp ETTT--EEEEE---S
T ss_pred eCcCCcEEeehhccC
Confidence 999999999887543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-06 Score=87.88 Aligned_cols=281 Identities=15% Similarity=0.089 Sum_probs=157.1
Q ss_pred CCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEee-ecCC----------------c
Q 040987 52 SGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISS-LEGH----------------K 114 (762)
Q Consensus 52 ~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~-l~~h----------------~ 114 (762)
.+.+.++|+++++...+......+.. ..|||||++||+..++.|.+++..+++..+. ..|- -
T Consensus 22 ~~~y~i~d~~~~~~~~l~~~~~~~~~-~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~ 100 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTPPPPKLQD-AKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVF 100 (353)
T ss_dssp EEEEEEEETTTTEEEESS-EETTBSE-EEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTS
T ss_pred ceeEEEEecCCCceEECcCCcccccc-ceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceecccccc
Confidence 36788999999888877666677776 9999999999999999999999988755432 2220 1
Q ss_pred cceeEEEEeCCCCcccceeeeEEee-ecCCeEEEEeCC---CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 115 APVTTVIVVPASTPATKILSYCWTA-SLDGTIKYWDFS---VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~-s~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
+.-.++-|||||+ +||.. -.+..|+.+.+. .... ....+..+.+|
T Consensus 101 ~~~~~~~WSpd~~-------~la~~~~d~~~v~~~~~~~~~~~~~-----~yp~~~~~~YP------------------- 149 (353)
T PF00930_consen 101 DRRSAVWWSPDSK-------YLAFLRFDEREVPEYPLPDYSPPDS-----QYPEVESIRYP------------------- 149 (353)
T ss_dssp SSSBSEEE-TTSS-------EEEEEEEE-TTS-EEEEEEESSSTE-----SS-EEEEEE---------------------
T ss_pred ccccceEECCCCC-------EEEEEEECCcCCceEEeeccCCccc-----cCCcccccccC-------------------
Confidence 2346788999994 44444 334445544432 1110 00011111110
Q ss_pred EEeeeccccCcCCccCCCCCCccc--cEEEEecCCccccceee----eccCCCceEEEECCCCCEEE-EEe-----CCeE
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNG--RICKCNLTESRLAGGVT----LAEMKEPQVITISSSGKYFG-IRK-----QRKL 258 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~--~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~spdg~~la-~~~-----~~~i 258 (762)
-.|..+- .+.++|+++++...... ......+..+.|++|++.|+ .-. ...+
T Consensus 150 -----------------k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 150 -----------------KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp -----------------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred -----------------CCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 2233333 45567888877642121 23455678999999999454 321 2346
Q ss_pred EEEEccCchhhhheee-eeeeccCcCeEEEEEc-CCCc-EEEEeecCCeEEEE--eccCCceeecccccccccccccccC
Q 040987 259 LIWKVPDVEAERVVMR-KITLHHTKKLTVLAFH-PTQR-IVAAGDVTGRILIW--RGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 259 ~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~s-p~~~-~l~~~~~dg~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
.+.|..++... ... ....+--..-....|. +++. +|.....+|.-+|+ +..++.
T Consensus 213 ~~~d~~tg~~~--~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~------------------- 271 (353)
T PF00930_consen 213 VLCDASTGETR--VVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK------------------- 271 (353)
T ss_dssp EEEEECTTTCE--EEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-------------------
T ss_pred EEEECCCCcee--EEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-------------------
Confidence 66777776543 111 1111111222355554 5554 55555567755555 443332
Q ss_pred CCCcccCCccccceeeeccccceeE-EEEecCCCEEEE-Eec----CCeEEEEecC-CCceeccCCCCCCeEEEEeCCCC
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSV-LIFSSDGAYLYS-GGK----EGVLVVWQLD-TGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s-~~~----dg~i~~wd~~-~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
...+....-.|.. +.++++++.|+. +.. ...|+.-+++ .+....+......-..+.|||++
T Consensus 272 ------------~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 272 ------------PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp ------------EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTS
T ss_pred ------------eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCC
Confidence 2344444555644 677888776654 433 2467777888 66666665554444799999999
Q ss_pred CeEEEEec
Q 040987 407 SLSSISCA 414 (762)
Q Consensus 407 ~~l~~~~~ 414 (762)
++++..+.
T Consensus 340 ~y~v~~~s 347 (353)
T PF00930_consen 340 KYYVDTYS 347 (353)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEc
Confidence 99886543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.2e-09 Score=107.61 Aligned_cols=266 Identities=14% Similarity=0.143 Sum_probs=190.1
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADN--QVHL 420 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i 420 (762)
...+.++.|....+|++|+.+.++|+.|+..|.|+++++.+|... ....|+..++.+.-+.||..+++.+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 455677788899999999999999999999999999999999875 5778899999999999999887765533 4678
Q ss_pred EEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 421 LKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 421 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
|++.+ +...+++.+. .++.|+.....-+.|+......+||+.++....++....-.. ..
T Consensus 1172 W~~~s~~~~~Hsf~ed--------------~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~------~y 1231 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDED--------------KAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS------SY 1231 (1516)
T ss_pred hccccccCcccccccc--------------ceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh------hh
Confidence 98865 5555555432 467787765555666666779999999987765532211111 33
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
.-....|+|+.+++.--+ .+||.+..+.+..+..+... ..-.|+|.|..++.-+
T Consensus 1232 ~~n~a~FsP~D~LIlndG--------------vLWDvR~~~aIh~FD~ft~~-------~~G~FHP~g~eVIINS----- 1285 (1516)
T KOG1832|consen 1232 SNNLAHFSPCDTLILNDG--------------VLWDVRIPEAIHRFDQFTDY-------GGGGFHPSGNEVIINS----- 1285 (1516)
T ss_pred hccccccCCCcceEeeCc--------------eeeeeccHHHHhhhhhheec-------ccccccCCCceEEeec-----
Confidence 347788999998877433 58999988777666543211 1236999999988766
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---C---------------CeEEEEeCCCCeE
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---E---------------TVITLWDPDRNVL 641 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d---------------~~i~iwd~~~~~~ 641 (762)
.|||+++.+.....+ .-.-..+.|...|..+...- | ...+-+|..+.+.
T Consensus 1286 EIwD~RTF~lLh~VP-------------~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~ 1352 (1516)
T KOG1832|consen 1286 EIWDMRTFKLLHSVP-------------SLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSD 1352 (1516)
T ss_pred hhhhhHHHHHHhcCc-------------cccceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhcccccccccc
Confidence 389999998877663 33445677777776554321 1 2345556666677
Q ss_pred EEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 642 VAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
+.++.+ ...+..++-+|...+|..--.
T Consensus 1353 iaTi~v-~R~~~Dlct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1353 IATIPV-DRCLLDLCTEPTDSFLGVIEM 1379 (1516)
T ss_pred ceeeec-ccchhhhhcCCccceEEEEec
Confidence 777764 356778888887788777543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-07 Score=81.37 Aligned_cols=143 Identities=15% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE------eCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR------KQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~------~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
+++..||.+.+.+.+.-..+......-...-.+.++...+++|.++ .-+..++|+++..+.. .......
T Consensus 105 ~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~-----~~~~~~~ 179 (319)
T KOG4714|consen 105 CIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTL-----IPSKKAL 179 (319)
T ss_pred EecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccc-----ccccccc
Confidence 6678999999999877433322222222222233333445555433 3456677777765543 1111223
Q ss_pred cCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 282 KKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 282 ~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
..|.+++-+|.. +.+++|+.||.+-+||.+... .+...+..|..+++.+.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-----------------------------~p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-----------------------------MPVSLLKAHKAEIWEVH 230 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEccccc-----------------------------chHHHHHHhhhhhhhee
Confidence 349999999954 567788999999999986552 24567888999999999
Q ss_pred Eec-CCCEEEEEecCCeEEEEecCC
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|+| ++..|+++++||.+..||..+
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 998 568899999999999999875
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.2e-06 Score=85.54 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=148.9
Q ss_pred cCCCEEEEEec-CCeEEEEecCCCce---eccCC----CC---------CCeEE-----EEeCCCCCeEEEEe-cCCcEE
Q 040987 363 SDGAYLYSGGK-EGVLVVWQLDTGKK---KFLPR----IG---------SPLLY-----FTESPDPSLSSISC-ADNQVH 419 (762)
Q Consensus 363 ~~g~~l~s~~~-dg~i~~wd~~~~~~---~~~~~----~~---------~~v~~-----~~~s~~~~~l~~~~-~d~~i~ 419 (762)
.||++|+.-.. ...|...+++..+. +.++. |+ ..|.+ +=++|||+.+...+ ..+.+.
T Consensus 139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS 218 (635)
T PRK02888 139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT 218 (635)
T ss_pred cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence 37888887654 34566566555443 21111 11 11211 22456777654332 245688
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+.|.++.+...++.-. +....++++|+|+++++.+.+ .++...+..... ..+.....
T Consensus 219 vID~etmeV~~qV~Vd-----------gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~------ 279 (635)
T PRK02888 219 AVDAETMEVAWQVMVD-----------GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIA------ 279 (635)
T ss_pred EEECccceEEEEEEeC-----------CCcccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchH------
Confidence 8888887777665432 244678999999999887632 122222221111 00000000
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-----CCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
..-++.++|++...++ +.|.+.|..+ ......+.. ......+.++|||+++
T Consensus 280 ------~iea~vkdGK~~~V~g-----------n~V~VID~~t~~~~~~~v~~yIPV-------GKsPHGV~vSPDGkyl 335 (635)
T PRK02888 280 ------RIEEAVKAGKFKTIGG-----------SKVPVVDGRKAANAGSALTRYVPV-------PKNPHGVNTSPDGKYF 335 (635)
T ss_pred ------HHHHhhhCCCEEEECC-----------CEEEEEECCccccCCcceEEEEEC-------CCCccceEECCCCCEE
Confidence 0013455777666543 5899999887 233333322 4456689999999998
Q ss_pred EEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC----------
Q 040987 571 VSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR---------- 638 (762)
Q Consensus 571 ~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~---------- 638 (762)
++++. +.++.|.|+...+....-+...-.+......-.......+|.++|....+-. |..|..||+..
T Consensus 336 yVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~ 415 (635)
T PRK02888 336 IANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKV 415 (635)
T ss_pred EEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccC
Confidence 77664 7899999998765321100000000000001134455789999998666666 99999999886
Q ss_pred CeEEEEeccccCcee-----EEEEeCCCCEEEEEEc
Q 040987 639 NVLVAVIGETLTPIM-----NMSFVGSSEYLVATSW 669 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~-----~~~~s~dg~~l~s~~~ 669 (762)
...+..+.-|..+.. .=.-.|||++|++...
T Consensus 416 ~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 416 DPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred CcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 345555555544322 1123679999999753
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=89.60 Aligned_cols=293 Identities=13% Similarity=0.110 Sum_probs=181.5
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
-|.+.|+.+.-. ..+++.+++.||.++.|.-..-... +.+..+..|...|.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGv---------------------------EfVKhFraHL~~I~s 58 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGV---------------------------EFVKHFRAHLGVILS 58 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccce---------------------------eehhhhHHHHHHHHh
Confidence 366666665544 5668999999999999975331111 245677889999999
Q ss_pred EEEecCCCEEEEEec-CCeEEEEecCCCceeccCC---CCCCeEEEEeCCCC--CeEEEE-ecCCcEEEEEcCCce-EEE
Q 040987 359 LIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDP--SLSSIS-CADNQVHLLKMPSME-IIR 430 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~--~~l~~~-~~d~~i~i~d~~~~~-~~~ 430 (762)
++.+-+|..+.+.+. |..++++|+++-....... .++.+.. ..++.. ..++++ ..++.+.++|-.... ...
T Consensus 59 l~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~ 137 (558)
T KOG0882|consen 59 LAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDG 137 (558)
T ss_pred hhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccc
Confidence 999999999999777 9999999998766543222 2222222 223321 134433 347889999976533 222
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CC-----ceeeEEeecccccCCCCcceeEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DR-----GISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~-----~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+.+. |..+|..+.+++-+..+++....|.|.-|.... -+ ....+... ..............++
T Consensus 138 ~fkkl---------H~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~e-TdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 138 YFKKL---------HFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHE-TDLYGFPKAKTEPTSF 207 (558)
T ss_pred eeccc---------ccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccccc-chhhcccccccCccce
Confidence 22221 237889999999999999998899999998873 11 11111000 0000001124567889
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.|+|+|..+++-+ .|..|++++..+++..+.+.......| +-|... +.+-.+
T Consensus 208 Efsp~g~qistl~---------~DrkVR~F~~KtGklvqeiDE~~t~~~---------~q~ks~----------y~l~~V 259 (558)
T KOG0882|consen 208 EFSPDGAQISTLN---------PDRKVRGFVFKTGKLVQEIDEVLTDAQ---------YQPKSP----------YGLMHV 259 (558)
T ss_pred EEccccCcccccC---------cccEEEEEEeccchhhhhhhccchhhh---------hccccc----------ccccee
Confidence 9999999999888 889999999999988776643211111 111111 111111
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.-+....... .. .......-+.+.|...|++|..|+--.|++.++.++++.+.+
T Consensus 260 elgRRmaver--el-----ek~~~~~~~~~~fdes~~flly~t~~gikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 260 ELGRRMAVER--EL-----EKHGSTVGTNAVFDESGNFLLYGTILGIKVINLDTNTVVRIL 313 (558)
T ss_pred ehhhhhhHHh--hH-----hhhcCcccceeEEcCCCCEEEeecceeEEEEEeecCeEEEEe
Confidence 1111111100 00 000123345688999999999998666999999998877765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.2e-07 Score=91.98 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=78.6
Q ss_pred ceeEEEEec----CCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC-CEEEEEEcccceEEeeecCCccc
Q 040987 42 RSFIFAVAR----SSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAP 116 (762)
Q Consensus 42 ~~~~~a~~~----~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~-~~i~iwd~~~~~~~~~l~~h~~~ 116 (762)
...+||+++ .-|.|.+|-- +++..+-..-+-.+.+ ++|.|..-.||.|-+ |.+.+|...+.+....-..|..+
T Consensus 26 sePlfAVA~fS~er~GSVtIfad-tGEPqr~Vt~P~hatS-LCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~ 103 (1416)
T KOG3617|consen 26 SEPLFAVASFSPERGGSVTIFAD-TGEPQRDVTYPVHATS-LCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAP 103 (1416)
T ss_pred CCceeEEEEecCCCCceEEEEec-CCCCCcccccceehhh-hccChHHHHHhhccccceeEEEecCCceeeeeccCCCCC
Confidence 366888877 3577776633 3333332333344565 999999988888886 99999999888777777789999
Q ss_pred eeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 117 VTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 117 V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
|..+.||++| ..|.|+..-|.|.+|...-
T Consensus 104 i~~l~wS~~G-------~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 104 IQGLDWSHDG-------TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ceeEEecCCC-------CeEEEcCCCceeEEEEeee
Confidence 9999999999 6788999999999998763
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.2e-08 Score=97.30 Aligned_cols=284 Identities=13% Similarity=0.146 Sum_probs=182.7
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-eccCCC--CCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCC--
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRI--GSPLLYFTESPDP--SLSSISCADNQVHLLKMPS-- 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~--~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~-- 425 (762)
.+.+..+..+|.|+-++.++.-| +.+.|++..-. -....| +-.+....|+|.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 45677889999999999988765 55666664332 222222 2246667787654 4455555666777888754
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
......+-+|. ..++.+.|.|+. ..+++++-|-.+..||+++.....-....- ......
T Consensus 103 ~~aIef~lhghs----------raitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w---------~s~asq 163 (1081)
T KOG0309|consen 103 SNAIEFVLHGHS----------RAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW---------RSAASQ 163 (1081)
T ss_pred ccceEEEEecCc----------cceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc---------cccCce
Confidence 23334455665 788999999864 478899999999999998764322111111 334567
Q ss_pred EEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEE
Q 040987 504 VALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKV 581 (762)
Q Consensus 504 ~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~i 581 (762)
++|+-. +..+|+. ..+.|.+||.+.+..+... .++| ...|+.+.|..- ...+.+++.|++|+.
T Consensus 164 Vkwnyk~p~vlass----------hg~~i~vwd~r~gs~pl~s----~K~~-vs~vn~~~fnr~~~s~~~s~~~d~tvkf 228 (1081)
T KOG0309|consen 164 VKWNYKDPNVLASS----------HGNDIFVWDLRKGSTPLCS----LKGH-VSSVNSIDFNRFKYSEIMSSSNDGTVKF 228 (1081)
T ss_pred eeecccCcchhhhc----------cCCceEEEeccCCCcceEE----eccc-ceeeehHHHhhhhhhhhcccCCCCceee
Confidence 888764 4555554 5578999999987654432 2457 778888888652 345778899999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc--EEEEE-cCCeE---------EEEeCCCC-eEEEEeccc
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS--VLAVA-AETVI---------TLWDPDRN-VLVAVIGET 648 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~--~la~~-~d~~i---------~iwd~~~~-~~~~~l~~~ 648 (762)
||........... .....+|..-.+-|-|+ ++.-- ++..+ ..|+..++ +.+..+.||
T Consensus 229 w~y~kSt~e~~~~----------vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 229 WDYSKSTTESKRT----------VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGH 298 (1081)
T ss_pred eccccccccccee----------ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCc
Confidence 9987544322110 01234455555555333 22111 12233 34444443 678899999
Q ss_pred cCceeEEEEeCCCC----------EEEEEEcCCCCeEEEEECCCC
Q 040987 649 LTPIMNMSFVGSSE----------YLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 649 ~~~v~~~~~s~dg~----------~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.+.|..+.|-..+. .|++-+.|.. +++|.+.+.
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~--lrlWpI~~~ 341 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT--LRLWPIDSQ 341 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCc--eEeeeccHH
Confidence 99888777755332 6999999998 999998763
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-05 Score=69.15 Aligned_cols=141 Identities=11% Similarity=0.015 Sum_probs=89.5
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK 373 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 373 (762)
.+++.|+..+.+.--|..++...- ...-+ .+|.+-+.- -|++++.|..
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~W-----------------------------e~ilg--~RiE~sa~v-vgdfVV~GCy 71 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIW-----------------------------EAILG--VRIECSAIV-VGDFVVLGCY 71 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEe-----------------------------ehhhC--ceeeeeeEE-ECCEEEEEEc
Confidence 467778888888888887775432 11111 122222211 3668999999
Q ss_pred CCeEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.|.+++.+..+|.........+.| ......+++..+..++.|++.+..|..+...+...+... +...+.
T Consensus 72 ~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG----------~~f~sP 141 (354)
T KOG4649|consen 72 SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG----------GTFVSP 141 (354)
T ss_pred cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCC----------ceeccc
Confidence 999999999999664322222222 234567899999999999999999999988777755433 334456
Q ss_pred EEeCCCCEEEEeecCceEEEEEcC
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
++.|-...|.++...|.+.--...
T Consensus 142 ~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 142 VIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred eecCCCceEEEEeccceEEEEccC
Confidence 666733344444555555444443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.75 E-value=3e-08 Score=63.65 Aligned_cols=39 Identities=28% Similarity=0.649 Sum_probs=36.9
Q ss_pred ceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 104 GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 104 ~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
|++++++++|.+.|++|+|+|++ .+|+|++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~-------~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDG-------NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTS-------SEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEeccc-------ccceeeCCCCEEEEEC
Confidence 57889999999999999999999 7999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-05 Score=76.23 Aligned_cols=274 Identities=12% Similarity=0.023 Sum_probs=137.9
Q ss_pred eEEEEecCCCEEEEEec---CCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 357 SVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+.-+|.+||+.|+.++. ...+++.|+++++..++..... ......++++.+.++.......+...|+.+.+....+
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 34468899987776664 3568889999999887766542 2335667788888877767779999999998765555
Q ss_pred ccCCCCCCCCCcccCceeeEEE--eCCCCEEEEee----------------------cCceEEEEEcCCCCceeeEEeec
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAF--NHDGGLVALRA----------------------ENYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~----------------------~dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
.... ..+....| +.|+..++-.- -...|.-.|+.+++....+..
T Consensus 119 ~~p~----------~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~-- 186 (386)
T PF14583_consen 119 EVPD----------DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED-- 186 (386)
T ss_dssp E--T----------TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE--
T ss_pred ECCc----------ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec--
Confidence 5443 44444444 34566544321 113456667777654332222
Q ss_pred ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 489 RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
...+..+.|+|....+++-+...+.+. -|. +||-+.+.. ....+.. ... ...+.-=-|.|||
T Consensus 187 ---------~~wlgH~~fsP~dp~li~fCHEGpw~~--Vd~--RiW~i~~dg~~~~~v~~---~~~-~e~~gHEfw~~DG 249 (386)
T PF14583_consen 187 ---------TDWLGHVQFSPTDPTLIMFCHEGPWDL--VDQ--RIWTINTDGSNVKKVHR---RME-GESVGHEFWVPDG 249 (386)
T ss_dssp ---------SS-EEEEEEETTEEEEEEEEE-S-TTT--SS---SEEEEETTS---EESS------T-TEEEEEEEE-TTS
T ss_pred ---------CccccCcccCCCCCCEEEEeccCCcce--ece--EEEEEEcCCCcceeeec---CCC-CcccccccccCCC
Confidence 566889999996655555443333222 122 445554322 2222211 111 3345556799999
Q ss_pred CeEEEEeC-----CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC------------
Q 040987 568 RAAVSSSY-----GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET------------ 629 (762)
Q Consensus 568 ~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~------------ 629 (762)
..|..-+. +..|.-+|..+++..... .......+.-++||++++.=+ |.
T Consensus 250 ~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~-------------~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 250 STIWYDSYTPGGQDFWIAGYDPDTGERRRLM-------------EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp S-EEEEEEETTT--EEEEEE-TTT--EEEEE-------------EE-SEEEEEE-TTSSEEEEEE---------------
T ss_pred CEEEEEeecCCCCceEEEeeCCCCCCceEEE-------------eCCceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 98776432 334666677766543222 122344667789999887522 31
Q ss_pred ----eEEEEeCCCCeEEEEe---------ccccC-ceeEEEEeCCCCEEEEEEc-CCC
Q 040987 630 ----VITLWDPDRNVLVAVI---------GETLT-PIMNMSFVGSSEYLVATSW-GSK 672 (762)
Q Consensus 630 ----~i~iwd~~~~~~~~~l---------~~~~~-~v~~~~~s~dg~~l~s~~~-d~~ 672 (762)
-|++++++.++..... .++.. .-..+.|||||++++..|. .|.
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~ 374 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGP 374 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCC
Confidence 5677888877654222 22211 1356899999999888764 444
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.2e-06 Score=82.53 Aligned_cols=225 Identities=15% Similarity=0.072 Sum_probs=138.1
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEE--eCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFT--ESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
+|+|..||..+|+............... ..+++..+++++.++.+..||..+|+.+..+.... .+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~-----------~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG-----------PISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS-----------CGGS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc-----------cccc
Confidence 6889999999998864433321121122 23366777777899999999999999988877532 1111
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
.. ..++..+++++.++.++.+|..+++...+........ ...........++..++++. .++.|
T Consensus 71 ~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~---------~~g~l 134 (238)
T PF13360_consen 71 AP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPP------AGVRSSSSPAVDGDRLYVGT---------SSGKL 134 (238)
T ss_dssp GE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCT------CSTB--SEEEEETTEEEEEE---------TCSEE
T ss_pred ee-eecccccccccceeeeEecccCCcceeeeeccccccc------cccccccCceEecCEEEEEe---------ccCcE
Confidence 11 2234566777788899999999999887743221100 00112222333377777776 67899
Q ss_pred EEEEecCCCceeEEEEEeecCCCCC------ce-EEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 532 KFWVSGTQNKEFTLSTIVYEPHRDA------GI-SAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~~~~h~~~------~v-~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
..+|+.+++.+...... .+.... .+ ..+.+. ++ .++.++.++.+.-+|+.+++..-..
T Consensus 135 ~~~d~~tG~~~w~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~----------- 199 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVG--EPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSK----------- 199 (238)
T ss_dssp EEEETTTTEEEEEEESS--TT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEE-----------
T ss_pred EEEecCCCcEEEEeecC--CCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEe-----------
Confidence 99999999887766431 111011 11 233333 44 6666777775433499988744211
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
....+.. ....++..|++++ ++.|..||+++|+.+-
T Consensus 200 --~~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 200 --PISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp --CSS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred --cCCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 0111222 1346777888777 9999999999998763
|
... |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.3e-07 Score=87.97 Aligned_cols=261 Identities=13% Similarity=0.088 Sum_probs=174.8
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-Cc
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NY 468 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg 468 (762)
|...|+.+.. ...+++..++.||.++.|.-..- +.+..+..|. +.+.+++.+-++.++.+.+. |.
T Consensus 8 hrd~i~hv~~-tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL----------~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 8 HRDVITHVFP-TKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL----------GVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred ccceeeeEee-ehhheEEeeecchhhhhcCCCCccceeehhhhHHHH----------HHHHhhhccccceeEeeccCccc
Confidence 3444444433 34578899999999999976541 2233344444 67889999999999999777 99
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC-CC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD-GS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
.++++|+.+-..+..+....- ...+. ...+|. -. .++++.. .++.+.++|-....+.....
T Consensus 77 s~KvfDvEn~DminmiKL~~l--------Pg~a~-wv~skGd~~s~IAVs~~--------~sg~i~VvD~~~d~~q~~~f 139 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIKLVDL--------PGFAE-WVTSKGDKISLIAVSLF--------KSGKIFVVDGFGDFCQDGYF 139 (558)
T ss_pred ceeEEEeeccchhhhcccccC--------CCceE-EecCCCCeeeeEEeecc--------cCCCcEEECCcCCcCcccee
Confidence 999999987665543332111 11111 112221 12 4444443 67899999987665332221
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc-cccccccCCceeeee-----ecccCCCCeEEEEEcCCC
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE-LQQKDLQSSGWSCHA-----VGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~s~dg 620 (762)
..-| ..+|..+.+.|-+..+++....|.|.-|..... +.... ...|.... ...-.....+++.|+|+|
T Consensus 140 ---kklH-~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 140 ---KKLH-FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred ---cccc-cCceEEEEeeccccceeeccccceeEeecCCCcccCccc--cccccccccchhhcccccccCccceEEcccc
Confidence 1346 889999999999999999988999999998741 11110 00111110 111234677899999999
Q ss_pred cEEEEEc-CCeEEEEeCCCCeEEEEecc--------------------------------cc-CceeEEEEeCCCCEEEE
Q 040987 621 SVLAVAA-ETVITLWDPDRNVLVAVIGE--------------------------------TL-TPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~~~~~~~l~~--------------------------------~~-~~v~~~~~s~dg~~l~s 666 (762)
..+++-+ |..|++++..+|++++.+.. |. -.-..+.|...|++|+.
T Consensus 214 ~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly 293 (558)
T KOG0882|consen 214 AQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLY 293 (558)
T ss_pred CcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEe
Confidence 9999887 99999999999876554421 11 12456789999999999
Q ss_pred EEcCCCCeEEEEECCCCceeeEEE
Q 040987 667 TSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
++-=| |++.++.+++..+.+-
T Consensus 294 ~t~~g---ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 294 GTILG---IKVINLDTNTVVRILG 314 (558)
T ss_pred eccee---EEEEEeecCeEEEEec
Confidence 99988 9999999998876553
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00019 Score=64.57 Aligned_cols=161 Identities=10% Similarity=0.051 Sum_probs=97.1
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.|..+.++++ +. .-+..-+|.+.++ . +..+.+.--|..++... ....-...|.+-+.- -|++
T Consensus 2 rW~vd~~kCV-------Da--spLVV~~dskT~v~igSHs~~~~avd~~sG~~~------We~ilg~RiE~sa~v-vgdf 65 (354)
T KOG4649|consen 2 RWAVDLRKCV-------DA--SPLVVCNDSKTLVVIGSHSGIVIAVDPQSGNLI------WEAILGVRIECSAIV-VGDF 65 (354)
T ss_pred ceeccchhhc-------cC--CcEEEecCCceEEEEecCCceEEEecCCCCcEE------eehhhCceeeeeeEE-ECCE
Confidence 4666666666 11 2233445555443 3 35677777788887753 222233445444433 4668
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce-eEEEEecCCCEEEEEecC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV-SVLIFSSDGAYLYSGGKE 374 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~g~~l~s~~~d 374 (762)
++.|...|.+++.+..++.... .+..- +.| ......+++..++.++.|
T Consensus 66 VV~GCy~g~lYfl~~~tGs~~w------------------------------~f~~~-~~vk~~a~~d~~~glIycgshd 114 (354)
T KOG4649|consen 66 VVLGCYSGGLYFLCVKTGSQIW------------------------------NFVIL-ETVKVRAQCDFDGGLIYCGSHD 114 (354)
T ss_pred EEEEEccCcEEEEEecchhhee------------------------------eeeeh-hhhccceEEcCCCceEEEecCC
Confidence 9999999999999998885432 11111 111 123456788999999999
Q ss_pred CeEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
++.+..|..+...++....++.+ .+.+..|-...|+++...|.+.-...++
T Consensus 115 ~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 115 GNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred CcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCC
Confidence 99999999998887765555543 3455666334444455555555444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.8e-05 Score=83.05 Aligned_cols=242 Identities=13% Similarity=0.108 Sum_probs=148.1
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+.|.++.|..+...++.+...|.|.+-|.++... .....-...|.+++|
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------------------------------eivg~vd~GI~aasw 117 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-------------------------------EIVGNVDNGISAASW 117 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce-------------------------------eeeeeccCceEEEee
Confidence 5899999999999999999999999998765432 223334568999999
Q ss_pred ecCCCEEEEEecCCeEEEEecC----C-------------------Cce-eccC---------------------CCCCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLD----T-------------------GKK-KFLP---------------------RIGSP 396 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~----~-------------------~~~-~~~~---------------------~~~~~ 396 (762)
+||++.++..+..+++.+-+-. . |+. ..+. ...+.
T Consensus 118 S~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~ 197 (1265)
T KOG1920|consen 118 SPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDH 197 (1265)
T ss_pred cCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccC
Confidence 9999999988887777664320 0 000 0000 01122
Q ss_pred eEEEEeCCCCCeEEEEe-----cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCc
Q 040987 397 LLYFTESPDPSLSSISC-----ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENY 468 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg 468 (762)
=.++.|--||+++++.. ....|++||.+ |.+-..-.... +.-.+++|-|.|..+++.. .|+
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~----------~l~~~LsWkPsgs~iA~iq~~~sd~ 266 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVE----------GLQHSLSWKPSGSLIAAIQCKTSDS 266 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCccc----------ccccceeecCCCCeEeeeeecCCCC
Confidence 34589999999999843 23789999987 43322211111 3446899999999988764 456
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
.|.+|.-+.-+. ..+...... ....+..++|+.++..||+.... .....|++|-...-.-. ++..
T Consensus 267 ~IvffErNGL~h-g~f~l~~p~------de~~ve~L~Wns~sdiLAv~~~~------~e~~~v~lwt~~NyhWY--LKq~ 331 (1265)
T KOG1920|consen 267 DIVFFERNGLRH-GEFVLPFPL------DEKEVEELAWNSNSDILAVVTSN------LENSLVQLWTTGNYHWY--LKQE 331 (1265)
T ss_pred cEEEEecCCccc-cccccCCcc------cccchheeeecCCCCceeeeecc------cccceEEEEEecCeEEE--EEEE
Confidence 788887643221 111111110 03348999999999999984311 04456999988765322 2221
Q ss_pred eecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEc
Q 040987 549 VYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~ 584 (762)
..-+. . . -+.|+|.. ..|..-..+|...++++
T Consensus 332 l~~~~-~-~--~~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 332 LQFSQ-K-A--LLMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred Eeccc-c-c--cccccCCCceeEEEEecCCcEEEEEE
Confidence 11111 1 1 17788742 23333335666555554
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.5e-05 Score=83.20 Aligned_cols=300 Identities=13% Similarity=0.041 Sum_probs=168.8
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-------eE--EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-------LL--YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-------v~--~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
+..++.++.++.++..|..+|+.+........ +. .++. .++..+++++.++.+.-+|.++|+.+..+...
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~-~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY-WDPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE-ccCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 34677777789999999999987543222211 00 0111 12267778889999999999999999887643
Q ss_pred CCCCCCCCcccCce-eeEEEeCCCCEEEEee---------cCceEEEEEcCCCCceeeEEeecccccCCCCc--------
Q 040987 436 KLPCPLPEEYKGLC-RDIAFNHDGGLVALRA---------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDV-------- 497 (762)
Q Consensus 436 ~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-------- 497 (762)
.... ....+ ....+. +..+++++ .++.+..+|..+++..................
T Consensus 140 ~~~~-----~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 140 DQVP-----PGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred CCcC-----cceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 3100 00001 112222 23454543 36789999999999887765431100000000
Q ss_pred --ceeE-EEEEEecCCCeEEEEeeec-ccc--------CCCceeEEEEEEecCCCceeEEEEEeecCCCCC----ceEEE
Q 040987 498 --TVVV-TLVALSQDGSLMSTVDIKL-AEE--------GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA----GISAV 561 (762)
Q Consensus 498 --~~~v-~~~~~sp~g~~l~~~~~~~-~~~--------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~----~v~~~ 561 (762)
...+ ...++.+.+..++.++.+. +.. ....++.+.-+|..+++..+..+. ..| .. .....
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~---~~~-~~~~~~~~s~p 288 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT---TPH-DLWDYDGPNQP 288 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC---CCC-CCcccccCCCC
Confidence 0011 1345555566666665211 000 001234899999999999887653 111 10 00001
Q ss_pred EEc----CCCC---eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE---------
Q 040987 562 AFH----PNRR---AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV--------- 625 (762)
Q Consensus 562 ~~s----pd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--------- 625 (762)
.+. -++. .++.++.+|.+...|..+++.+-..+ .. ...++.+| +...+.
T Consensus 289 ~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~-------~~-------~~~~~~~~-~~vyv~~~~~~~~~~ 353 (488)
T cd00216 289 SLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP-------EV-------EQPMAYDP-GLVYLGAFHIPLGLP 353 (488)
T ss_pred eEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE-------ee-------ccccccCC-ceEEEccccccccCc
Confidence 111 1333 57778889999999999998754431 00 11123333 221111
Q ss_pred --------Ec-CCeEEEEeCCCCeEEEEecccc--------CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 626 --------AA-ETVITLWDPDRNVLVAVIGETL--------TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 626 --------~~-d~~i~iwd~~~~~~~~~l~~~~--------~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
.. +|.+.-.|+.+|+.+-...... .+...-...-.+..|+.++.||. |+.+|.++|+++|+
T Consensus 354 ~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~--l~ald~~tG~~lW~ 431 (488)
T cd00216 354 PQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGY--FRAFDATTGKELWK 431 (488)
T ss_pred ccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCe--EEEEECCCCceeeE
Confidence 12 5778888888888766554220 11111111125578888888988 99999999999999
Q ss_pred EEEee
Q 040987 689 YLLHV 693 (762)
Q Consensus 689 ~~~~~ 693 (762)
++...
T Consensus 432 ~~~~~ 436 (488)
T cd00216 432 FRTPS 436 (488)
T ss_pred EECCC
Confidence 88753
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-05 Score=87.18 Aligned_cols=281 Identities=11% Similarity=0.114 Sum_probs=159.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
.+.|.++.|..+...++.+..+|.|.+-|.++............|.+++||||+..++..+..+++.+-.- +..++..-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTK-DFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEec-cccchhcc
Confidence 46799999999999999999999999999998888777778889999999999999999887777665432 22222211
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.- ...-.+.++.+-+|-... =.-+.-..++....-................=+.+.|--||++
T Consensus 147 ~L----------------~~d~~~~sk~v~VGwGrk-eTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~ 209 (1265)
T KOG1920|consen 147 PL----------------DADDERKSKFVNVGWGRK-ETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY 209 (1265)
T ss_pred cc----------------ccccccccccceeccccc-ceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE
Confidence 10 111112222222221111 0111111111000000000000000000223467899999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEcccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQ 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~ 589 (762)
+|+...... .+...|++||.+ +.....- .+. .+.-.+++|-|.|..+++-. .|+.|.+|.-+.-..
T Consensus 210 fAVs~~~~~----~~~RkirV~drE-g~Lns~s-----e~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 210 FAVSFVESE----TGTRKIRVYDRE-GALNSTS-----EPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred EEEEEEecc----CCceeEEEeccc-chhhccc-----Ccc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 999652111 033799999988 3322111 111 33345899999999998764 456788888654322
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE---c-CCeEEEEeCCCCe--EEEEeccccCceeEEEEeCC-CC
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA---A-ETVITLWDPDRNV--LVAVIGETLTPIMNMSFVGS-SE 662 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~---~-d~~i~iwd~~~~~--~~~~l~~~~~~v~~~~~s~d-g~ 662 (762)
- .+. .........+..++|+.++..||+. . ...|++|-+.+.. +.+.+.-..... +.|+|- ..
T Consensus 279 g-~f~-------l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~ 348 (1265)
T KOG1920|consen 279 G-EFV-------LPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEK 348 (1265)
T ss_pred c-ccc-------cCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCce
Confidence 1 110 0011123448999999999999984 3 4459999988763 222332222222 677773 22
Q ss_pred EEEEEEcCCC
Q 040987 663 YLVATSWGSK 672 (762)
Q Consensus 663 ~l~s~~~d~~ 672 (762)
.|..-..+|.
T Consensus 349 ~L~v~~~sG~ 358 (1265)
T KOG1920|consen 349 TLHVLRESGQ 358 (1265)
T ss_pred eEEEEecCCc
Confidence 3333334444
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.6e-06 Score=87.44 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=61.7
Q ss_pred CceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+.+++|+|..-.|+.+ .-|.+.+|...+.+.- .....|..+|..+.|||+|..|+++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h-----tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH-----TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceee-----eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 45679999998888876 6799999999887764 6777899999999999999999999999999999875
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.6e-08 Score=102.13 Aligned_cols=220 Identities=13% Similarity=0.129 Sum_probs=155.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+.+..|....+|++|+-+.++|+.|+..|.|+++++.++.. .....+|..
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------------------------------e~s~ncH~S 1144 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------------------------------EESVNCHQS 1144 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------------------------------ccccccccc
Confidence 45567888999999999999999999999999999987743 346678999
Q ss_pred ceeEEEEecCCCEEEEEecCC--eEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEG--VLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
+|+.+.-+.||..+++.+.-. -..+|++..- .-..|. ..-.++.|+.....-+.|+......+||+.++..+.+
T Consensus 1145 avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~---~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1145 AVTLVEPSVDGSTQLTSSSSSSPLSALWDASST---GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred ccccccccCCcceeeeeccccCchHHHhccccc---cCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence 999999999998877665433 4678988651 111121 2345677877766666777778899999999877766
Q ss_pred -EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 432 -ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 -~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+.+... . ...-....|+|+..+++ .|| .+||.+..+.+..+.... .-..-.|+|.|
T Consensus 1222 ylt~~~~-~------~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-----------~~~~G~FHP~g 1278 (1516)
T KOG1832|consen 1222 YLTDTVT-S------SYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFT-----------DYGGGGFHPSG 1278 (1516)
T ss_pred hcCcchh-h------hhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhe-----------ecccccccCCC
Confidence 332211 0 01226788999988765 455 579998876665554321 12233689999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
..++..+ .|||+++.+.....+. -.-..+.|+..|..+..
T Consensus 1279 ~eVIINS--------------EIwD~RTF~lLh~VP~--------Ldqc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1279 NEVIINS--------------EIWDMRTFKLLHSVPS--------LDQCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEeec--------------hhhhhHHHHHHhcCcc--------ccceEEEeccCccchhh
Confidence 9988876 6999999887665532 23356788888876543
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00049 Score=67.61 Aligned_cols=322 Identities=14% Similarity=0.129 Sum_probs=135.6
Q ss_pred ecCCcceeeee------cCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 59 EYPAVNSKMIR------GGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 59 ~~~~~~~~~~~------~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
|-.++.+++.. .|..+-.. -+|.+||+.|+++++ ..+.+.|+++++..+.-.+-........++|+++
T Consensus 16 D~~TG~~VtrLT~~~~~~h~~YF~~-~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~- 93 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDGHSHRLYFYQ-NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDR- 93 (386)
T ss_dssp -TTT--EEEE-S-TTS-EE---TTS---B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSS-
T ss_pred CCCCCceEEEecCCCCcccceeecC-CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCC-
Confidence 44455555432 24455554 779999988888873 6889999999886664443333344566788883
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEE-EeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFS-MVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
.++-......|+--|+++++....+.....-.. ..+ +
T Consensus 94 ------~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~--------------------v---------------- 131 (386)
T PF14583_consen 94 ------ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTW--------------------V---------------- 131 (386)
T ss_dssp ------EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEE--------------------E----------------
T ss_pred ------eEEEEECCCeEEEEECCcCcEEEEEECCcccccccce--------------------e----------------
Confidence 433344456888999999876655554432111 110 0
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
...|++..+--....+.. ... . .+....++..+.-...|.-.|+.+++. +........+..+
T Consensus 132 --~n~d~t~~~g~e~~~~d~-~~l---~------~~~~f~e~~~a~p~~~i~~idl~tG~~------~~v~~~~~wlgH~ 193 (386)
T PF14583_consen 132 --ANSDCTKLVGIEISREDW-KPL---T------KWKGFREFYEARPHCRIFTIDLKTGER------KVVFEDTDWLGHV 193 (386)
T ss_dssp --E-TTSSEEEEEEEEGGG---------------SHHHHHHHHHC---EEEEEEETTT--E------EEEEEESS-EEEE
T ss_pred --eCCCccEEEEEEEeehhc-cCc---c------ccHHHHHHHhhCCCceEEEEECCCCce------eEEEecCccccCc
Confidence 011111111000000000 000 0 000000011112235677778888875 3444456678899
Q ss_pred EEcCCCcEEEEeecCC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc--cceeEEE
Q 040987 288 AFHPTQRIVAAGDVTG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP--SEVSVLI 360 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~ 360 (762)
.|+|....+++-+..| .-++|-+..... ....+..|. ..+..=-
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~-----------------------------~~~~v~~~~~~e~~gHEf 244 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGS-----------------------------NVKKVHRRMEGESVGHEF 244 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETTS--------------------------------EESS---TTEEEEEEE
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcCCC-----------------------------cceeeecCCCCccccccc
Confidence 9999655444433322 135665533211 111111121 2233346
Q ss_pred EecCCCEEEEEe-----cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC----------------cEE
Q 040987 361 FSSDGAYLYSGG-----KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN----------------QVH 419 (762)
Q Consensus 361 ~s~~g~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~----------------~i~ 419 (762)
|.|||..|..-+ .+..|.-+|..+++...+...+ ....+..++||++++-=+.|. .|+
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p-~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP-WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC-ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 889998876533 2456788899988765443333 345666789998876433321 456
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCccc-CceeeEEEeCCCCEEEEeec-CceEEEE
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYK-GLCRDIAFNHDGGLVALRAE-NYCIHFY 473 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~-dg~i~i~ 473 (762)
++++..++... +..|.........++ ..=....|+||+++++..+. .|...||
T Consensus 324 ~~~~~~~~~~~-l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 324 LFDVEAGRFRK-LARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp EEETTTTEEEE-EEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred EeccccCceee-eeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence 67777655432 222211000000000 01146899999999887764 3444444
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.3e-07 Score=84.97 Aligned_cols=150 Identities=11% Similarity=0.108 Sum_probs=115.7
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+..+-+-|++++-..... . ...|.++.|...++++..|..+|.|..+|++.... ...|..+.. +
T Consensus 232 ~sqqv~L~nvetg~~qsf~-------s-ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-----G~~~~a~rl--y 296 (425)
T KOG2695|consen 232 LSQQVLLTNVETGHQQSFQ-------S-KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-----GNGWCAQRL--Y 296 (425)
T ss_pred ccceeEEEEeecccccccc-------c-chhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-----CCCcceEEE--E
Confidence 5678889999988543322 2 67899999999899999999999999999987622 223433322 4
Q ss_pred CCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeE---EEEeccccCceeEE--EEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 607 KKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVL---VAVIGETLTPIMNM--SFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 607 ~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~---~~~l~~~~~~v~~~--~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
|...|+++..-. ++++|.+.+ +|.|.+||..--++ +....||...-.-+ -..+....++++++|.. .+||.
T Consensus 297 h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcy--tRiWs 374 (425)
T KOG2695|consen 297 HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCY--TRIWS 374 (425)
T ss_pred cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeE--EEEEe
Confidence 788999988766 777777777 99999999987777 88888986653333 34456778999999998 99999
Q ss_pred CCCCceeeEEEEee
Q 040987 680 MSKLSISWSYLLHV 693 (762)
Q Consensus 680 ~~~~~~~~~~~~~~ 693 (762)
++.|.++.++..+.
T Consensus 375 l~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 375 LDSGHLLCTIPFPY 388 (425)
T ss_pred cccCceeeccCCCC
Confidence 99999998776664
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.8e-07 Score=59.10 Aligned_cols=39 Identities=15% Similarity=0.334 Sum_probs=37.0
Q ss_pred CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 639 NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++++..+.+|.++|++++|+|++.+|++++.|+. |++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~--i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT--IRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE--EEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE--EEEEC
Confidence 4788999999999999999999999999999998 99997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.1e-05 Score=82.70 Aligned_cols=188 Identities=13% Similarity=0.062 Sum_probs=125.3
Q ss_pred CceeeEEEeCCCCEEEEee---cC-ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 447 GLCRDIAFNHDGGLVALRA---EN-YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~---~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+..-.|+|+++.++..+ .. ..+.++++.+++....... ...-...+|+|||+.|+....+
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----------~g~~~~P~fspDG~~l~f~~~r--- 258 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----------NGNNGAPAFSPDGSKLAFSSSR--- 258 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----------CCccCCccCCCCCCEEEEEECC---
Confidence 4556778999998776553 22 4689999998876554442 3334567899999999988741
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-C--cEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-G--DFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.+.-.|.++|+.+..... +.. + .+.-+.-.|+|||+.++..+.. | .|.+++.+.+.......
T Consensus 259 ---dg~~~iy~~dl~~~~~~~-Lt~----~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~----- 323 (425)
T COG0823 259 ---DGSPDIYLMDLDGKNLPR-LTN----G--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF----- 323 (425)
T ss_pred ---CCCccEEEEcCCCCccee-ccc----C--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec-----
Confidence 034467777777776333 221 1 2233478899999999987753 3 46677777665433221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCe--EEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETV--ITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~--i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
....-....|||||++|+..+ +|. |.+.|+.++...+.+. +........|.++|+.+...+.-+
T Consensus 324 -------~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 324 -------SGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred -------cCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence 122222789999999999876 555 7788887776555554 344466788999999988877655
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.2e-07 Score=84.29 Aligned_cols=151 Identities=11% Similarity=0.105 Sum_probs=115.8
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
++.+.+..|-+-|++++.. +.+. -.+.|.++.|...++.+..|...|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-------------------------------qsf~-sksDVfAlQf~~s~nLv~~GcRnge 275 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------------------------------QSFQ-SKSDVFALQFAGSDNLVFNGCRNGE 275 (425)
T ss_pred ecccccceeEEEEeecccc-------------------------------cccc-cchhHHHHHhcccCCeeEecccCCc
Confidence 4445566788888877632 2233 4567888889888899999999999
Q ss_pred EEEEecCCCc-----eeccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceE---EEEEccCCCCCCCCCcccC
Q 040987 377 LVVWQLDTGK-----KKFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEI---IRSISGIKLPCPLPEEYKG 447 (762)
Q Consensus 377 i~~wd~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~ 447 (762)
|...|++... +....-|+..|+++..-. ++++|++.+.+|.|++||++.-++ +.+..+|....
T Consensus 276 I~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~-------- 347 (425)
T KOG2695|consen 276 IFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS-------- 347 (425)
T ss_pred EEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccc--------
Confidence 9999998752 345566888888888766 788999999999999999987665 88888886432
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.-.-+.+.+....++++++|...++|.+..+..+.+++..
T Consensus 348 a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 348 AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 2223445667778888999999999999999887776543
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.2e-06 Score=75.47 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=113.5
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceec-------------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-------------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+..+.++.+ ..|+++..++.+......++.+.. +..+.++-.+-..+.-++.++++..||.+.+++
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 455555543 345566555555554443333321 112222222223334567889999999999998
Q ss_pred cCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----cCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 423 MPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-----ENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+.-. ..+.+.... ..-.+.++...++.+.++. .-+..+.|++...+... ...+.
T Consensus 118 ~~~~~~~~~~i~~~~----------~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~---~~~~~------ 178 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIH----------SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI---PSKKA------ 178 (319)
T ss_pred chHHHhhhhhccccc----------ccccccceeecccEEecCCcceEeeccceeeeccccccccc---ccccc------
Confidence 87511 111111100 1112233333444444332 11335566654433221 11111
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSY 575 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~ 575 (762)
...|.+++-+|..+.++.++. ++|.+.+||.+....+..+ +..| +..|..+.|+| ++..|+++++
T Consensus 179 -~~~v~~l~~hp~qq~~v~cgt--------~dg~~~l~d~rn~~~p~S~----l~ah-k~~i~eV~FHpk~p~~Lft~se 244 (319)
T KOG4714|consen 179 -LDAVTALCSHPAQQHLVCCGT--------DDGIVGLWDARNVAMPVSL----LKAH-KAEIWEVHFHPKNPEHLFTCSE 244 (319)
T ss_pred -cccchhhhCCcccccEEEEec--------CCCeEEEEEcccccchHHH----HHHh-hhhhhheeccCCCchheeEecC
Confidence 234889999997665554442 8999999999987544333 5788 99999999999 5778999999
Q ss_pred CCcEEEEEccc
Q 040987 576 GGDFKVWICND 586 (762)
Q Consensus 576 dg~i~iwd~~~ 586 (762)
||.+..||..+
T Consensus 245 dGslw~wdas~ 255 (319)
T KOG4714|consen 245 DGSLWHWDAST 255 (319)
T ss_pred CCcEEEEcCCC
Confidence 99999999875
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.8e-05 Score=81.19 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=90.9
Q ss_pred eeeeeEEEEEEeecCCcceeEEEEecCCCeEEEEecCCcceeee-ecCcccccCCceeecCCCEEEEEeC-CEEEEEEcc
Q 040987 25 KLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMI-RGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTS 102 (762)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~-~~h~~~v~~~~~~s~dg~~la~~~~-~~i~iwd~~ 102 (762)
.....++.-+.+...+ ..+++.|.+.|.+.+|+-..++...+ .+....++++...|++..++|+|++ |.|.|+-++
T Consensus 29 ~~~~~~~v~lTc~dst--~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 29 PGFFPARVKLTCVDAT--EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cccCcceEEEEEeecC--CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhh
Confidence 3345566667777777 66999999999999999887766655 3234444445889999999999984 999999887
Q ss_pred cceE-----Eeee-cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 103 TGLQ-----ISSL-EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 103 ~~~~-----~~~l-~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
.+.+ +..+ +.|...|+|++|++++ .-+++|...|+|..-.+++
T Consensus 107 ~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-------~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 107 KELPRDLDYVTPCDKSHKCRVTALEWSKNG-------MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ccCCCcceeeccccccCCceEEEEEecccc-------cEEeecCCCceEEEEEech
Confidence 6431 2222 2488999999999999 7888999999998887776
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00023 Score=75.83 Aligned_cols=274 Identities=12% Similarity=0.053 Sum_probs=148.9
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCe---EEEEeCC--CCCeEEEEe---------cCCcEEEEEcCCceEEEE
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL---LYFTESP--DPSLSSISC---------ADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v---~~~~~s~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~ 431 (762)
..++.++.++.|+.+|.++|+.+........+ ..+.-+| .+..+++++ .++.+..+|..+|+.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~ 190 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR 190 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence 57888888999999999999986443332221 0111111 124455543 357899999999998887
Q ss_pred EccCCC-CCCCCCcc---------cCce-eeEEEeCCCCEEEEeecCc------------------eEEEEEcCCCCcee
Q 040987 432 ISGIKL-PCPLPEEY---------KGLC-RDIAFNHDGGLVALRAENY------------------CIHFYSLLDDRGIS 482 (762)
Q Consensus 432 ~~~~~~-~~~~~~~~---------~~~v-~~~~~s~~~~~l~~~~~dg------------------~i~i~d~~~~~~~~ 482 (762)
+..... +...+... ...+ ...++.+.+..+++++.++ .|.-+|..+++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 754321 11000000 0111 2356666667788887665 79999999999887
Q ss_pred eEEeecccccCCCCcc-eeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCce
Q 040987 483 EVQVCERNHQPGDDVT-VVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI 558 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~-~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v 558 (762)
................ ..+..+. .-+|. .++.++ .++.+...|..+++.++..... .
T Consensus 271 ~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~---------~~G~l~ald~~tG~~~W~~~~~---------~ 331 (488)
T cd00216 271 FYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAP---------KNGFFYVLDRTTGKLISARPEV---------E 331 (488)
T ss_pred EeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEEC---------CCceEEEEECCCCcEeeEeEee---------c
Confidence 7654211000000000 0111111 11333 456665 6789999999999988776431 0
Q ss_pred EEEEEcCCCCeEEEE------------------eCCCcEEEEEcccccccccccCCceeeeeecccC----CCCe--EEE
Q 040987 559 SAVAFHPNRRAAVSS------------------SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK----KKAM--TAA 614 (762)
Q Consensus 559 ~~~~~spd~~~l~~~------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~i--~~~ 614 (762)
..++.+| ..++.+ ..+|.+.-.|..+++.+-..+ .....+ .... ..+
T Consensus 332 ~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~-------~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 332 QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKR-------EGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEee-------CCccccccccCCcccCcce
Confidence 1123333 222221 134667777777776543331 100000 0011 122
Q ss_pred EEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee--EEEEeCCCCEEEEEEcCC
Q 040987 615 AFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM--NMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 615 ~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~--~~~~s~dg~~l~s~~~d~ 671 (762)
. -.+..|++++ ||.++.+|.++|+.+-..+-. ..+. -+.|..+| .+..+..+|
T Consensus 403 ~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~-~~~~a~P~~~~~~g-~~yv~~~~g 458 (488)
T cd00216 403 A--TAGNLVFAGAADGYFRAFDATTGKELWKFRTP-SGIQATPMTYEVNG-KQYVGVMVG 458 (488)
T ss_pred E--ecCCeEEEECCCCeEEEEECCCCceeeEEECC-CCceEcCEEEEeCC-EEEEEEEec
Confidence 2 2456788877 999999999999998877542 3332 23344555 344444444
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-06 Score=85.85 Aligned_cols=189 Identities=16% Similarity=0.186 Sum_probs=134.0
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+.+.|++++ +++++.|+.+|.|++.+..... .....|...
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--------------------------------~~~~~~s~~------ 79 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--------------------------------KTNFDHSSS------ 79 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCCcc--------------------------------ccccccccc------
Confidence 456677775 6689999999999999975441 122223322
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC-----CCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD-----PSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
..+|.++++|+.||.|.+-.+.+.+.........++.+++++|| .+.+++|+..| +.++.-+-.........+.
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~ 158 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE 158 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec
Confidence 56899999999999999999999988888888899999999998 56788888888 7776543222111112222
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
.+|.|.++.|. |+++|-++.+| |++||+.+++.+..++......++ ......+.|.++.++++--
T Consensus 159 --------~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~----e~fpphl~W~~~~~LVIGW 223 (846)
T KOG2066|consen 159 --------GEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRP----ELFPPHLHWQDEDRLVIGW 223 (846)
T ss_pred --------CccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCc----ccCCCceEecCCCeEEEec
Confidence 23789999987 66888888887 999999998877766544322111 3345677887776555433
Q ss_pred eeeccccCCCceeEEEEEEec
Q 040987 517 DIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~ 537 (762)
+ .+|++..++
T Consensus 224 ~-----------d~v~i~~I~ 233 (846)
T KOG2066|consen 224 G-----------DSVKICSIK 233 (846)
T ss_pred C-----------CeEEEEEEe
Confidence 2 478888887
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00032 Score=71.37 Aligned_cols=118 Identities=13% Similarity=0.185 Sum_probs=84.1
Q ss_pred CCceEEEECCCCC-EEEE-----EeCC----eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 236 KEPQVITISSSGK-YFGI-----RKQR----KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 236 ~~v~~~~~spdg~-~la~-----~~~~----~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
..+.++.||-... .+-+ +.+| .-.+|++...+.. ............|.+++++|+...|+.|+.||.|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq--rvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ--RVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee--EEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 3456777776333 2322 1223 2456777766544 3334445678899999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
.+||...+. ..+....-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 284 iLyD~~~~~--------------------------------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 284 ILYDTTRGV--------------------------------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCCe--------------------------------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 999986542 122233345688999999999999999999999998765
Q ss_pred ce
Q 040987 386 KK 387 (762)
Q Consensus 386 ~~ 387 (762)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 43
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00019 Score=73.97 Aligned_cols=227 Identities=15% Similarity=0.148 Sum_probs=121.0
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.... +.++|+|++++.+++|.-.|+.....+... .+.-...+|.+.+ . .|+-...++|+|+.--+.
T Consensus 34 ~p~~-ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n-------~-yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 34 YPQS-LSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRN-------R-YAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp --SE-EEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSS-------E-EEEE-TTS-EEEEETTEE
T ss_pred CCee-EEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCc-------c-EEEEECCCeEEEEEcCcc
Confidence 3454 999999999999999999999954333322 2445667899966 3 335555788888632222
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+..+.++....
T Consensus 100 ~~~k~i~~~~~--------------------------------------------------------------------- 110 (443)
T PF04053_consen 100 EVVKSIKLPFS--------------------------------------------------------------------- 110 (443)
T ss_dssp -TT-----SS----------------------------------------------------------------------
T ss_pred ccceEEcCCcc---------------------------------------------------------------------
Confidence 22222221111
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
+..+-. |.+|+...++.|.+||+.+++.. . .-.-.+|..+.|+++++++|..+.+ .+.+++....
T Consensus 111 ----~~~If~---G~LL~~~~~~~i~~yDw~~~~~i-----~--~i~v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 111 ----VEKIFG---GNLLGVKSSDFICFYDWETGKLI-----R--RIDVSAVKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp ----EEEEE----SSSEEEEETTEEEEE-TTT--EE-----E--EESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred ----cceEEc---CcEEEEECCCCEEEEEhhHccee-----e--EEecCCCcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 111111 78888888889999999998743 2 2223348999999999999988755 5777765322
Q ss_pred ceeecccccccccccccccCCCCcccCCcc--ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDA--DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~ 391 (762)
.... ...++ .....+..-...|.+.+|..| .++..... .++. +-.|+.-.+.
T Consensus 176 ~~~~---------------------~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~ 229 (443)
T PF04053_consen 176 AVAA---------------------IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIA 229 (443)
T ss_dssp HHHH---------------------BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEE
T ss_pred hccc---------------------ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEE
Confidence 0000 00000 122333333678899999766 44444443 6665 5556665555
Q ss_pred CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 392 RIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
..+.++.-+.+.++.+.++....++.+..+.+.
T Consensus 230 ~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 230 HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 556677777888877788888888888877665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-05 Score=79.46 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=126.9
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec---C-CcEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA---D-NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
..+.+-|.+......+......+....|+|+++.++.... . ..+.++++++++....+... +.-.
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-----------g~~~ 241 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-----------GNNG 241 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-----------CccC
Confidence 3455555553333444455566778899999988766532 2 35899999987665554421 3346
Q ss_pred eEEEeCCCCEEEEee-cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 451 DIAFNHDGGLVALRA-ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~-~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
..+|+|||+.|+... .|| .|+++|+.+..... +... .+.-..-.|+|||++++..+.+ ++
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~----------~gi~~~Ps~spdG~~ivf~Sdr------~G 304 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNG----------FGINTSPSWSPDGSKIVFTSDR------GG 304 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccC----------CccccCccCCCCCCEEEEEeCC------CC
Confidence 678999999988775 334 57777887765322 2221 2223367899999999998731 12
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-Cc--EEEEEcccccccccccCCceeeeeec
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-GD--FKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.-.|.+++.+......... .+ +.-....|+|||++++..+.. |. |.+.|+.++.....+
T Consensus 305 ~p~I~~~~~~g~~~~riT~----~~---~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~l----------- 366 (425)
T COG0823 305 RPQIYLYDLEGSQVTRLTF----SG---GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRIL----------- 366 (425)
T ss_pred CcceEEECCCCCceeEeec----cC---CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEc-----------
Confidence 3367777777665422211 11 122278899999999988753 43 556666555432222
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..........|.++|+.+...+
T Consensus 367 -t~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 367 -TSTYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred -cccccCCCCCcCCCCceEEEec
Confidence 1233444678889999887654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00017 Score=74.26 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=118.3
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
........+.++|+|++++++ .||...++.....+. ...+.-..
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~-----------------------------------k~~G~g~~ 73 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRN-----------------------------------KAFGSGLS 73 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEE-----------------------------------EEEEE-SE
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcc-----------------------------------cccCceeE
Confidence 344567899999999999884 578888887422211 12234456
Q ss_pred EEEecCCCEEEEEecCCeEEEE-ecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVW-QLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~w-d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
.+|.+.+ .+++-...++|.++ +++... ......+..+..+-. |.+|...+. +.|.+||..+++.++.+..
T Consensus 74 ~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-~k~i~~~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v--- 144 (443)
T PF04053_consen 74 FVWSSRN-RYAVLESSSTIKIYKNFKNEV-VKSIKLPFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDV--- 144 (443)
T ss_dssp EEE-TSS-EEEEE-TTS-EEEEETTEE-T-T-----SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS---
T ss_pred EEEecCc-cEEEEECCCeEEEEEcCcccc-ceEEcCCcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEec---
Confidence 7898855 56666667889996 332222 111222223444433 888877644 4899999999999999874
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC---------C--ceeeEEeecccccCCCCcceeEEEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD---------R--GISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---------~--~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
..|..+.|++++++++..+.+ .+.+++.... - ....+... ...|.+.+|
T Consensus 145 ---------~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~----------~~~IkSg~W 204 (443)
T PF04053_consen 145 ---------SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI----------SERIKSGCW 204 (443)
T ss_dssp ----------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----------S--SEEEE
T ss_pred ---------CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe----------cceeEEEEE
Confidence 347899999999999998766 4777665432 0 11111110 345788888
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
..| .++..+ .. .++. +-.+.. ..+... ..++.-+.+.|..+.+.....|+.+..+.+..
T Consensus 205 ~~d--~fiYtT---------~~-~lkY--l~~Ge~-~~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 205 VED--CFIYTT---------SN-HLKY--LVNGET-GIIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ETT--EEEEE----------TT-EEEE--EETTEE-EEEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred EcC--EEEEEc---------CC-eEEE--EEcCCc-ceEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 776 333333 22 5555 333322 222211 44666677788777888888888888887754
Q ss_pred c
Q 040987 587 E 587 (762)
Q Consensus 587 ~ 587 (762)
.
T Consensus 264 ~ 264 (443)
T PF04053_consen 264 S 264 (443)
T ss_dssp H
T ss_pred H
Confidence 3
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0012 Score=70.69 Aligned_cols=313 Identities=10% Similarity=0.029 Sum_probs=176.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCC--CCeEE----------EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIG--SPLLY----------FTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~--~~v~~----------~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+-.|.++|+.+...... ..+.. +++ .+..+++++.++.+.-+|..+|+.+...
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~ 146 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK 146 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence 346777777888999999999875432221 11111 111 2356777888999999999999998876
Q ss_pred ccCCCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc----------CCC
Q 040987 433 SGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ----------PGD 495 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~----------~~~ 495 (762)
....... ...+. ...+. ++ .++++. .+|.|.-+|.++++.+........... ...
T Consensus 147 ~~~~~~~------~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~ 218 (527)
T TIGR03075 147 KNGDYKA------GYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEP 218 (527)
T ss_pred ccccccc------cccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccccccccc
Confidence 5321100 00111 11111 33 445443 268899999999998877654332100 000
Q ss_pred -----------CcceeE-EEEEEecCCCeEEEEeeec-cccCC--Cc----eeEEEEEEecCCCceeEEEEEeecCCC--
Q 040987 496 -----------DVTVVV-TLVALSQDGSLMSTVDIKL-AEEGI--GS----LVCLKFWVSGTQNKEFTLSTIVYEPHR-- 554 (762)
Q Consensus 496 -----------~~~~~v-~~~~~sp~g~~l~~~~~~~-~~~~~--~~----d~~i~iwd~~~~~~~~~~~~~~~~~h~-- 554 (762)
.....+ ..+++.|+..++..+.... +..+. .. ...|.-.|+++++....++. .+|.
T Consensus 219 ~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~---~~~D~w 295 (527)
T TIGR03075 219 GAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT---TPHDEW 295 (527)
T ss_pred ccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC---CCCCCc
Confidence 001111 2346677666666554221 11000 01 23788889999999888765 2331
Q ss_pred ----CCceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc---CCceeeeee---------------------
Q 040987 555 ----DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ---SSGWSCHAV--------------------- 603 (762)
Q Consensus 555 ----~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~--------------------- 603 (762)
.....-+.+..+|+ .++.+..+|.+++.|-.+++.+...+ ...|.....
T Consensus 296 D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~ 375 (527)
T TIGR03075 296 DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGK 375 (527)
T ss_pred cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCC
Confidence 01112233334666 78889999999999999998753211 112211100
Q ss_pred ----cccCCCC--eEEEEEcCCCcEEEEEc-C---------------------------------CeEEEEeCCCCeEEE
Q 040987 604 ----GSYKKKA--MTAAAFSADGSVLAVAA-E---------------------------------TVITLWDPDRNVLVA 643 (762)
Q Consensus 604 ----~~~~~~~--i~~~~~s~dg~~la~~~-d---------------------------------~~i~iwd~~~~~~~~ 643 (762)
..+..+. -..++++|+..++.+.. + +.|.-+|+.+|+.+-
T Consensus 376 ~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W 455 (527)
T TIGR03075 376 PVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVW 455 (527)
T ss_pred eeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceee
Confidence 0000000 12356666655554332 2 457778888887776
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+.......+. ..-.+.+++.++.||. ++.+|.+||+++|.+....
T Consensus 456 ~~~~~~p~~~~~-l~t~g~lvf~g~~~G~--l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 456 EHKEDFPLWGGV-LATAGDLVFYGTLEGY--FKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred EecCCCCCCCcc-eEECCcEEEEECCCCe--EEEEECCCCCEeEEEeCCC
Confidence 654322112222 2224556777777887 9999999999999988763
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00016 Score=76.10 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=147.0
Q ss_pred EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEE
Q 040987 400 FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYS 474 (762)
Q Consensus 400 ~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d 474 (762)
-++++.+..++.|+.+|.|.+++-. .+.++.+..+.. +.+..+....+..+|++.+.|+ .+++|+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~---------siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~ 98 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQ---------SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWD 98 (933)
T ss_pred eEEcCCCceEEEeeccccEEEeccc-ceeeehheecch---------hhhhHhhcccCceEEEEEeecCCCCceEEEEec
Confidence 3467888999999999999888754 444466665551 2234444444446777777664 589999
Q ss_pred cCCCCceeeEEeecccc---c-CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 475 LLDDRGISEVQVCERNH---Q-PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
++..+.... +.+...| . .......++..++.+.+-+.+|+|- .+|.|..+.-+-.+....-.. ..
T Consensus 99 lek~~~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf---------~nG~V~~~~GDi~RDrgsr~~-~~ 167 (933)
T KOG2114|consen 99 LEKVDKNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF---------TNGLVICYKGDILRDRGSRQD-YS 167 (933)
T ss_pred ccccCCCCC-cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe---------cCcEEEEEcCcchhcccccee-ee
Confidence 975432110 1111000 0 0011256789999999999999998 889999886543222111111 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCe
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~ 630 (762)
... ..+|+.+++..+++.++....-..|.+|.+.+..... .....++....|-.|++....++++++..
T Consensus 168 ~~~-~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~----------~~ld~~G~~lnCss~~~~t~qfIca~~e~ 236 (933)
T KOG2114|consen 168 HRG-KEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSL----------KVLDNNGISLNCSSFSDGTYQFICAGSEF 236 (933)
T ss_pred ccC-CCCceeeEEecCCceeEEEEecceeEEEEecCCCcce----------eeeccCCccceeeecCCCCccEEEecCce
Confidence 222 6799999999999884444445679999998444111 22345778888999987766688888888
Q ss_pred EEEEeCCCCeEEEEec-cccCceeEEEEeCCCCEEEEEEcC
Q 040987 631 ITLWDPDRNVLVAVIG-ETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
+.+|+......-..+. ||.... -|..-|..|+....-
T Consensus 237 l~fY~sd~~~~cfaf~~g~kk~~---~~~~~g~~L~v~~~~ 274 (933)
T KOG2114|consen 237 LYFYDSDGRGPCFAFEVGEKKEM---LVFSFGLLLCVTTDK 274 (933)
T ss_pred EEEEcCCCcceeeeecCCCeEEE---EEEecCEEEEEEccC
Confidence 9999998665555555 554332 233334455544333
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-05 Score=72.79 Aligned_cols=261 Identities=13% Similarity=0.119 Sum_probs=149.9
Q ss_pred EEEEecCCCce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 377 LVVWQLDTGKK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 377 i~~wd~~~~~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
+++.+..+.+. ..++.+...|..++|||..+ ++..++.++.|+|.|+++......+..+ ..+++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-----------~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-----------NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-----------CCceeeee
Confidence 44444333333 25666777899999999887 6778889999999999998888877765 37799999
Q ss_pred eCCCC-EEEEeecCceEEEEEcCCCCcee-eEEeecccccCCCCcceeEEEE------EEecCCCeEEEEeeeccccCCC
Q 040987 455 NHDGG-LVALRAENYCIHFYSLLDDRGIS-EVQVCERNHQPGDDVTVVVTLV------ALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 455 s~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~------~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.-|.. +|..|-.+|.|.+||++..+... ++..... ..+|..+ ...+-|.+++...
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t--------~~pv~~i~~~~~n~~f~~gglLv~~l--------- 306 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVT--------INPVHKIAPVQPNKIFTSGGLLVFAL--------- 306 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhc--------cCcceeecccCccccccccceEEeee---------
Confidence 98765 45566688999999998754322 1111011 1223332 2333455555554
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE-EEeCCCc------EEE-EEcccccccccccCCce
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV-SSSYGGD------FKV-WICNDELQQKDLQSSGW 598 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~-~~~~dg~------i~i-wd~~~~~~~~~~~~~~~ 598 (762)
-.+.+|++........... ..+. .+...++.+.+..+.++ +.-.+.+ +-. -|-.+|.. .|
T Consensus 307 --t~l~f~ei~~s~~~~p~vl--ele~-pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~p-------Vc 374 (463)
T KOG1645|consen 307 --TVLQFYEIVFSAECLPCVL--ELEP-PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFP-------VC 374 (463)
T ss_pred --hhhhhhhhhccccCCCccc--ccCC-CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCce-------ee
Confidence 2466777654332111100 0122 44556666666444443 3322110 100 01111111 11
Q ss_pred eeeeeccc-CC---CCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeC--CCCEEEEEEcC
Q 040987 599 SCHAVGSY-KK---KAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG--SSEYLVATSWG 670 (762)
Q Consensus 599 ~~~~~~~~-~~---~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~--dg~~l~s~~~d 670 (762)
.+.....+ .. ..-..+.-.++..+|+.-+ -+.+.+||..+++.++.+. -..+|.+++... .+.+|+.-.+|
T Consensus 375 ~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~-~~epv~Dicp~~~n~~syLa~LTd~ 453 (463)
T KOG1645|consen 375 GKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA-LSEPVLDICPNDTNGSSYLALLTDD 453 (463)
T ss_pred eecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheeeecc-cCcceeecceeecCCcchhhheecc
Confidence 11110000 00 0011223345667766554 5889999999999999986 447888887665 35678888777
Q ss_pred CCCeEEEEECC
Q 040987 671 SKPQLSVWNMS 681 (762)
Q Consensus 671 ~~~~v~vwd~~ 681 (762)
. ++||..+
T Consensus 454 ~---v~Iyk~e 461 (463)
T KOG1645|consen 454 R---VHIYKNE 461 (463)
T ss_pred e---EEEEecC
Confidence 6 8888654
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.011 Score=64.06 Aligned_cols=535 Identities=14% Similarity=0.117 Sum_probs=256.8
Q ss_pred CCCEEEEEeC-C--EEEEEEcccceEEeeecC--------CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 84 DVKRLLVCTS-N--TVSIFSTSTGLQISSLEG--------HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 84 dg~~la~~~~-~--~i~iwd~~~~~~~~~l~~--------h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
+..+|..+.+ . .+.-||.+..+.+..-.+ ....=.-+...|.+ +.+.-.-.+|.+++-.+.+
T Consensus 72 ~kD~LfV~t~~~~~~iL~~d~~~~~vv~~a~~~v~dr~gr~s~~g~~~~VDp~~-------R~Igl~~yqgl~~vIp~d~ 144 (1096)
T KOG1897|consen 72 DKDYLFVATDSYRYFILEWDEESIQVVTRAHGDVSDRSGRPSDNGQILLVDPKG-------RVIGLHLYQGLFKVIPIDS 144 (1096)
T ss_pred CcceEEEEECcceEEEEEEccccceEEEEecccccccccccCCCceEEEECCCC-------cEEEEEeecCeEEEEEecc
Confidence 4468888884 3 566678654443322211 11222345678888 4556667788888877766
Q ss_pred ------cceEEEEEec--c-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 153 ------PELLKTIDVK--F-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 153 ------~~~~~~~~~~--~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
+..+.-+... . .+..++|-. +...|. +++... .+.+..++.|++.-
T Consensus 145 ~~sht~~s~l~~fn~rfdel~v~Di~fly--------~~s~pt-~~vly~----------------Ds~~~Hv~~yelnl 199 (1096)
T KOG1897|consen 145 DESHTGGSLLKAFNVRFDELNVYDIKFLY--------GCSDPT-LAVLYK----------------DSDGRHVKTYELNL 199 (1096)
T ss_pred cccccCcccccccccccCcceEEEEEEEc--------CCCCCc-eEEEEE----------------cCCCcEEEEEEecc
Confidence 3333333222 2 455565521 111111 444432 23566777776654
Q ss_pred cccc--cee---eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 224 SRLA--GGV---TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 224 ~~~~--~~~---~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
+..- ... ...+.....-..-+|.|-.|+.+....++... .... .+.........-+..-....++.+.+.
T Consensus 200 ~~ke~~~~~w~~~v~~~a~~li~VP~~~gGvlV~ge~~I~Y~~~---~~~~--ai~p~~~~~~t~~~~~~v~~~~~~yLl 274 (1096)
T KOG1897|consen 200 RDKEFVKGPWSNNVDNGASMLIPVPSPIGGVLVIGEEFIVYMSG---DNFV--AIAPLTAEQSTIVCYGRVDLQGSRYLL 274 (1096)
T ss_pred chhhccccccccccccCCceeeecCCCCceEEEEeeeEEEEeeC---Ccee--EecccccCCceEEEcccccCCccEEEE
Confidence 4211 111 12222233333334555566665544333332 1111 000000111112223345668888888
Q ss_pred eecCCeEEEEecc-CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 299 GDVTGRILIWRGF-GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 299 ~~~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+..+|.+...-+. +++..... ......-+...-..++..-++| .+++|+.-|.=
T Consensus 275 ~d~~G~Lf~l~l~~~~e~~s~~------------------------~lkve~lge~siassi~~L~ng-~lFvGS~~gdS 329 (1096)
T KOG1897|consen 275 GDEDGMLFKLLLSHTGETVSGL------------------------DLKVEYLGETSIASSINYLDNG-VLFVGSRFGDS 329 (1096)
T ss_pred ecCCCcEEEEEeecccccccce------------------------EEEEEecCCcchhhhhhcccCc-eEEEeccCCce
Confidence 9999988776654 33322210 0112223334445566666666 78888877665
Q ss_pred EEEecCCCcee-------ccCCCCCCeEEEEeCC-C---CCeEEEEe---cCCcEEEEEcCCceE-E--EEEccCCCCCC
Q 040987 378 VVWQLDTGKKK-------FLPRIGSPLLYFTESP-D---PSLSSISC---ADNQVHLLKMPSMEI-I--RSISGIKLPCP 440 (762)
Q Consensus 378 ~~wd~~~~~~~-------~~~~~~~~v~~~~~s~-~---~~~l~~~~---~d~~i~i~d~~~~~~-~--~~~~~~~~~~~ 440 (762)
.+-.+.+.... .....-+||..++.-. + +..+++++ .||++++..-.-+-. . -.+.|.
T Consensus 330 qLi~L~~e~d~gsy~~ilet~~NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gi----- 404 (1096)
T KOG1897|consen 330 QLIKLNTEPDVGSYVVILETFVNLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGI----- 404 (1096)
T ss_pred eeEEccccCCCCchhhhhhhcccccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCc-----
Confidence 55555432221 1112224677766532 1 23455443 378888876432211 1 122221
Q ss_pred CCCcccCceeeEE--EeC--CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEE
Q 040987 441 LPEEYKGLCRDIA--FNH--DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMST 515 (762)
Q Consensus 441 ~~~~~~~~v~~~~--~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~ 515 (762)
..+..+. +++ |. +|+.+-- +.-++..+... ...... .+. ......+..|- .|..|+-
T Consensus 405 ------kg~w~lk~~v~~~~d~-ylvlsf~-~eTrvl~i~~e--~ee~~~--~gf------~~~~~Tif~S~i~g~~lvQ 466 (1096)
T KOG1897|consen 405 ------KGMWSLKSMVDENYDN-YLVLSFI-SETRVLNISEE--VEETED--PGF------STDEQTIFCSTINGNQLVQ 466 (1096)
T ss_pred ------cceeEeeccccccCCc-EEEEEec-cceEEEEEccc--eEEecc--ccc------cccCceEEEEccCCceEEE
Confidence 2344444 333 33 5554433 33455555432 111100 000 11122222222 2222222
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccC
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 595 (762)
. ....|++++-......+.- .+.++....+-+...++.++.++.+...++..+......+
T Consensus 467 v----------Ts~~iRl~ss~~~~~~W~~---------p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~- 526 (1096)
T KOG1897|consen 467 V----------TSNSIRLVSSAGLRSEWRP---------PGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLREVSH- 526 (1096)
T ss_pred E----------ecccEEEEcchhhhhcccC---------CCceEEEEEeecceEEEEecCccEEEEEEeeccceeeeee-
Confidence 2 1246777776622222211 3455555555666677777777777777776665322221
Q ss_pred CceeeeeecccCCCCeEEEEEcCCC------cEEEEEc--CCeEEEEeCCCCeEEEE--ecc--ccCceeEEEEeCCCCE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADG------SVLAVAA--ETVITLWDPDRNVLVAV--IGE--TLTPIMNMSFVGSSEY 663 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg------~~la~~~--d~~i~iwd~~~~~~~~~--l~~--~~~~v~~~~~s~dg~~ 663 (762)
..-...|.|+.++|-| +++++|. +-.+.+.-..+...+.. +.+ -...|.-..|-.|..+
T Consensus 527 ---------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~y 597 (1096)
T KOG1897|consen 527 ---------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHY 597 (1096)
T ss_pred ---------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceE
Confidence 1235789999999742 3788886 44444444444433322 222 1223556677778899
Q ss_pred EEEEEcCCCCeEEEE--ECCCCceeeEEEEeecceeeeeeecCCCccccccCCccccCCCCCCCCCccccccCCcccCCC
Q 040987 664 LVATSWGSKPQLSVW--NMSKLSISWSYLLHVEGQFGYASIYGELPEFKLKRNQDLWAPSVPSEKPWETIFSGSSHNLPP 741 (762)
Q Consensus 664 l~s~~~d~~~~v~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 741 (762)
|.++..||. +.-+ |+.+|.+.-.-..+.. ..+.. +-.|+.+..+... ..+.|||.-......+++-|
T Consensus 598 LlvalgdG~--l~~fv~d~~tg~lsd~Kk~~lG----t~P~~--Lr~f~sk~~t~vf---a~sdrP~viY~~n~kLv~sp 666 (1096)
T KOG1897|consen 598 LLVALGDGA--LLYFVLDINTGQLSDRKKVTLG----TQPIS--LRTFSSKSRTAVF---ALSDRPTVIYSSNGKLVYSP 666 (1096)
T ss_pred EEEEcCCce--EEEEEEEcccceEccccccccC----CCCcE--EEEEeeCCceEEE---EeCCCCEEEEecCCcEEEec
Confidence 999999997 5544 6666654332222221 11100 1122222222222 23468888777777777766
Q ss_pred ch
Q 040987 742 LT 743 (762)
Q Consensus 742 ~~ 743 (762)
++
T Consensus 667 ls 668 (1096)
T KOG1897|consen 667 LS 668 (1096)
T ss_pred cc
Confidence 64
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.012 Score=63.80 Aligned_cols=446 Identities=15% Similarity=0.132 Sum_probs=226.0
Q ss_pred ceeecCCCEEEEEe----------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 79 PAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 79 ~~~s~dg~~la~~~----------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
..|+.+-+.++... .+.|++++-+ ..+..... .+.++....+.+. ..++.++.++.+..-
T Consensus 445 ~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~-------sqVvvA~~~~~l~y~ 514 (1096)
T KOG1897|consen 445 PGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRP-PGKITIGVVSANA-------SQVVVAGGGLALFYL 514 (1096)
T ss_pred ccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccC-CCceEEEEEeecc-------eEEEEecCccEEEEE
Confidence 44555555555544 3456666643 23333433 4456666666665 466677777888888
Q ss_pred eCCCcceEEEEEec---cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE-ecCCc
Q 040987 149 DFSVPELLKTIDVK---FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC-NLTES 224 (762)
Q Consensus 149 d~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw-d~~~~ 224 (762)
++..+. ++....+ ..+.++.+ ...+...+ ...+++. |..+..+.+. -..+.
T Consensus 515 ~i~~~~-l~e~~~~~~e~evaCLDi---sp~~d~~~--~s~~~aV-------------------G~Ws~~~~~l~~~pd~ 569 (1096)
T KOG1897|consen 515 EIEDGG-LREVSHKEFEYEVACLDI---SPLGDAPN--KSRLLAV-------------------GLWSDISMILTFLPDL 569 (1096)
T ss_pred Eeeccc-eeeeeeheecceeEEEec---ccCCCCCC--cceEEEE-------------------EeecceEEEEEECCCc
Confidence 887766 3222222 25555544 11111111 1112322 2222222221 11122
Q ss_pred cccceeeecc---CCCceEEEECCCCCEEEEE-eCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 225 RLAGGVTLAE---MKEPQVITISSSGKYFGIR-KQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 225 ~~~~~~~~~~---~~~v~~~~~spdg~~la~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
..+......- +..+...+|-.|..+|.++ .||.+.-+.+. ++... ..++... ...++.--.|+..++.-+.
T Consensus 570 ~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~ls--d~Kk~~l-Gt~P~~Lr~f~sk~~t~vf 646 (1096)
T KOG1897|consen 570 ILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLS--DRKKVTL-GTQPISLRTFSSKSRTAVF 646 (1096)
T ss_pred ceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEc--ccccccc-CCCCcEEEEEeeCCceEEE
Confidence 2111111111 3344555666677787654 78888766544 44332 2222222 2345555567665554444
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee-EEEEecC--CCEEEEEecCC
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS-VLIFSSD--GAYLYSGGKEG 375 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~s~~--g~~l~s~~~dg 375 (762)
+..|.-..+|.....-.+.. +. - ..+. -+.|+.+ ...++++.. +
T Consensus 647 a~sdrP~viY~~n~kLv~sp------------------------------ls-~-kev~~~c~f~s~a~~d~l~~~~~-~ 693 (1096)
T KOG1897|consen 647 ALSDRPTVIYSSNGKLVYSP------------------------------LS-L-KEVNHMCPFNSDAYPDSLASANG-G 693 (1096)
T ss_pred EeCCCCEEEEecCCcEEEec------------------------------cc-h-HHhhhhcccccccCCceEEEecC-C
Confidence 44455555555432211110 00 0 0011 1123222 233555543 5
Q ss_pred eEEEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEec-----------C---CcEEEEEcCCceEEEEEccCCCCC
Q 040987 376 VLVVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCA-----------D---NQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 376 ~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~-----------d---~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
.+.+..++.-+.. ...........+++.+....+.+.+. . ..++++|.++.+.+...+-...+.
T Consensus 694 ~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~ 773 (1096)
T KOG1897|consen 694 ALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNET 773 (1096)
T ss_pred ceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccce
Confidence 5666655543332 12334455666777664444443321 1 136777777766555433222110
Q ss_pred CCCCcccCceeeEEEeCC-CCEEEEee----------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 440 PLPEEYKGLCRDIAFNHD-GGLVALRA----------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~-~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
--.+.++.|..| +.++++|+ ..|.|.+|.......+.......- .+.+.++.. -
T Consensus 774 ------~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v--------~Gav~aL~~-f 838 (1096)
T KOG1897|consen 774 ------ALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVV--------KGAVYALVE-F 838 (1096)
T ss_pred ------eeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeee--------ccceeehhh-h
Confidence 024455568777 67777775 247788888776433332221110 233333322 2
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+|+++|.-+ ..|++|+..+.+....- ..+ ...+..+...-.|..++.|..-+.+.+...+..+
T Consensus 839 ngkllA~In-----------~~vrLye~t~~~eLr~e-----~~~-~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 839 NGKLLAGIN-----------QSVRLYEWTTERELRIE-----CNI-SNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CCeEEEecC-----------cEEEEEEccccceehhh-----hcc-cCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 677877765 58999999888544332 344 6678888888889999999877777765554333
Q ss_pred --ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 589 --QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 589 --~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
....- ...+..+.+++.+-.+..++.+-.+|.+.+-..+
T Consensus 902 g~f~evA----------rD~~p~Wmtaveil~~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 902 GNFEEVA----------RDYNPNWMTAVEILDDDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred CceEEee----------hhhCccceeeEEEecCceEEeecccccEEEEEec
Confidence 22211 2345678888888777666655557777776544
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.7e-05 Score=71.69 Aligned_cols=269 Identities=14% Similarity=0.087 Sum_probs=150.2
Q ss_pred EEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeeccccc
Q 040987 96 VSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLR 175 (762)
Q Consensus 96 i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~ 175 (762)
|+..+..+-+.+.-+.+|...|..++|||..+ .++..++.+.+|+|.|+.+..++..+..+..+++++|
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~------GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~w----- 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNE------GLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCW----- 243 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCcccc------ceeeeeccCceEEEEecccceeeeheeccCCceeeee-----
Confidence 55555555555556678889999999999985 4677899999999999999999999999999999966
Q ss_pred CCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec--cCCCceEEEE------CCCC
Q 040987 176 QPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA--EMKEPQVITI------SSSG 247 (762)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~------spdg 247 (762)
.-|.+. .| +.|..+|.|.+||++..+.......+ ...+|..++. .+-|
T Consensus 244 ---Dlde~h--~I-------------------YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~g 299 (463)
T KOG1645|consen 244 ---DLDERH--VI-------------------YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSG 299 (463)
T ss_pred ---ccCCcc--ee-------------------EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCcccccccc
Confidence 222211 11 67889999999999876655322222 2233443333 3334
Q ss_pred CEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE-EeecCC------eEEEE-eccCCceeecc
Q 040987 248 KYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA-AGDVTG------RILIW-RGFGDRTFATN 319 (762)
Q Consensus 248 ~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg------~v~vw-~~~~~~~~~~~ 319 (762)
.+|++. --.+..|++.....- .......+..+...++++.+-.+.++ +.-.+. .+-.. |...+..+-
T Consensus 300 glLv~~-lt~l~f~ei~~s~~~--~p~vlele~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc-- 374 (463)
T KOG1645|consen 300 GLLVFA-LTVLQFYEIVFSAEC--LPCVLELEPPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVC-- 374 (463)
T ss_pred ceEEee-ehhhhhhhhhccccC--CCcccccCCCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceee--
Confidence 444432 234556665533321 11111223345566666766444444 332210 01110 000010000
Q ss_pred cccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE-EecCCeEEEEecCCCceeccCCCCCCeE
Q 040987 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS-GGKEGVLVVWQLDTGKKKFLPRIGSPLL 398 (762)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s-~~~dg~i~~wd~~~~~~~~~~~~~~~v~ 398 (762)
..+.... +. ..-+-++.. .+.=.++.++++. ++..+++.+||..+.+.........++.
T Consensus 375 ------------~~r~~~~----Gs--~~~kl~t~~--ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~~epv~ 434 (463)
T KOG1645|consen 375 ------------GKRRTYF----GS--KQTKLSTTQ--AIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLALSEPVL 434 (463)
T ss_pred ------------eeccccc----CC--ccccccccc--ceeccccccEEEEecCCcceeEEeccchhheeeecccCccee
Confidence 0000000 00 000001111 1111344555554 4445789999999999887777778888
Q ss_pred EEEeCC-CCCeEEEEecCCcEEEEEcC
Q 040987 399 YFTESP-DPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 399 ~~~~s~-~~~~l~~~~~d~~i~i~d~~ 424 (762)
.++... ++.-++..-.|..++||..+
T Consensus 435 Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 435 DICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred ecceeecCCcchhhheecceEEEEecC
Confidence 887643 44434444467778887654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=77.09 Aligned_cols=215 Identities=15% Similarity=0.159 Sum_probs=139.9
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
-++++.+..++.|+.+|.|.+++-.- +.+..++.... ..+..+-...+..+|++.+. +..+.-..+
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~s~-~~~~~fqa~~~---------siv~~L~~~~~~~~L~sv~E----d~~~np~ll 94 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNSSF-QLIRGFQAYEQ---------SIVQFLYILNKQNFLFSVGE----DEQGNPVLL 94 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecccc-eeeehheecch---------hhhhHhhcccCceEEEEEee----cCCCCceEE
Confidence 46788889999999999998887532 22233333221 12344444444467777663 221122279
Q ss_pred EEEEecCCCc---eeEEEEEee----cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 532 KFWVSGTQNK---EFTLSTIVY----EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 532 ~iwd~~~~~~---~~~~~~~~~----~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
+||+++..+. +..+..... .+....++.+++.|.+-+.+|+|-.+|.|..+.=+--+.... .....
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs-------r~~~~ 167 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS-------RQDYS 167 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc-------ceeee
Confidence 9999875422 112211111 121156789999999999999999999998874322111111 00112
Q ss_pred ccCCCCeEEEEEcCCCcE-EEEEcCCeEEEEeCCCCe-EEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 605 SYKKKAMTAAAFSADGSV-LAVAAETVITLWDPDRNV-LVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~-la~~~d~~i~iwd~~~~~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.....+|+.+++-.|++. ++++.-..|.+|.+.... ....+..|..++.+..|++....++.++... |.+|+.+.
T Consensus 168 ~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~---l~fY~sd~ 244 (933)
T KOG2114|consen 168 HRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF---LYFYDSDG 244 (933)
T ss_pred ccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce---EEEEcCCC
Confidence 234789999999999987 555567889999998544 2455777878899999998666577777766 99999998
Q ss_pred CceeeEEE
Q 040987 683 LSISWSYL 690 (762)
Q Consensus 683 ~~~~~~~~ 690 (762)
..+.+.|.
T Consensus 245 ~~~cfaf~ 252 (933)
T KOG2114|consen 245 RGPCFAFE 252 (933)
T ss_pred cceeeeec
Confidence 88888887
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.9e-05 Score=79.26 Aligned_cols=182 Identities=13% Similarity=0.100 Sum_probs=129.4
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.+.+++++ +++++.|+.+|.+++++..... ..... | ... .-+|.++++++ .
T Consensus 41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~----~------s~~------~~~Gey~asCS---------~ 91 (846)
T KOG2066|consen 41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFD----H------SSS------ILEGEYVASCS---------D 91 (846)
T ss_pred HHHHHHhh--cceeeeccccceEEEEecCCcc--ccccc----c------ccc------ccCCceEEEec---------C
Confidence 44555555 5789999999999999976432 11100 0 111 56899999999 8
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-----CCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-----RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
||+|.|..+.+.+......- ..++.+++++|| .+.+++|+..| +.++.-+=-..... .
T Consensus 92 DGkv~I~sl~~~~~~~~~df-------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~---------v 154 (846)
T KOG2066|consen 92 DGKVVIGSLFTDDEITQYDF-------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDS---------V 154 (846)
T ss_pred CCcEEEeeccCCccceeEec-------CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccc---------e
Confidence 99999999998887665532 568999999998 56899999888 76664321111000 1
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCc------eeEEEEeCCCCEEEEEEcCCCCeEE
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTP------IMNMSFVGSSEYLVATSWGSKPQLS 676 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~------v~~~~~s~dg~~l~s~~~d~~~~v~ 676 (762)
......++|.++.| .|.++|-++|-.|+|||+.+++.+..++..... -..+.|.++. .|+.|=.|. |+
T Consensus 155 ~l~~~eG~I~~i~W--~g~lIAWand~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d~---v~ 228 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKW--RGNLIAWANDDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGDS---VK 228 (846)
T ss_pred eeecCccceEEEEe--cCcEEEEecCCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCCe---EE
Confidence 23456789999999 577999999888999999999888877544333 3457787764 566665555 88
Q ss_pred EEECC
Q 040987 677 VWNMS 681 (762)
Q Consensus 677 vwd~~ 681 (762)
|..+.
T Consensus 229 i~~I~ 233 (846)
T KOG2066|consen 229 ICSIK 233 (846)
T ss_pred EEEEe
Confidence 88887
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0014 Score=66.83 Aligned_cols=94 Identities=13% Similarity=0.138 Sum_probs=69.8
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.-.+|++...+.. .... .--+. ...+.+.+++|+...++.|+.||.|.+||...+...... ..-
T Consensus 237 d~ciYE~~r~klq-rvsv-tsipL-~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k-------------a~~ 300 (545)
T PF11768_consen 237 DSCIYECSRNKLQ-RVSV-TSIPL-PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK-------------AEF 300 (545)
T ss_pred EEEEEEeecCcee-EEEE-EEEec-CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee-------------ecc
Confidence 3456777655432 2211 11245 778999999999999999999999999998766433221 234
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
.++.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus 301 ~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 301 IPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 567899999999999999 699999998643
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00027 Score=72.85 Aligned_cols=121 Identities=13% Similarity=0.095 Sum_probs=92.2
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
|...|.--+++..+++++.|+.-|.+++|+-..++...... ....+.....+++..++|+|+..|.|.++.+....+.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~ 111 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR 111 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence 44456666777889999999999999999988887755444 3445666778999999999999999999988763221
Q ss_pred EEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 430 RSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 430 ~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
... ..+ ....|...|++++|++++..+.+|...|.|.+-.+..
T Consensus 112 ~~~~~t~-----~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 112 DLDYVTP-----CDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cceeecc-----ccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 111 101 0111457999999999999999999999999888876
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=81.79 Aligned_cols=183 Identities=18% Similarity=0.218 Sum_probs=132.1
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
++..++.|+....+..+|+.+.+......... .+.-+ -.+++.+.+|...|+|.+-|.++.+.++++..|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs------ 217 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHS------ 217 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCceeeeeeccc------
Confidence 44567788877888999999888765544443 34434 3578899999999999999999999999999998
Q ss_pred CcccCceeeEEEeCCCCEEEEeec---------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC-CCe
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAE---------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD-GSL 512 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-g~~ 512 (762)
+.+.+ |+-.|+.|++++. |..|++||++..+.+..+... ....-+.|.|. ...
T Consensus 218 ----~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-----------~~P~flrf~Psl~t~ 280 (1118)
T KOG1275|consen 218 ----GSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-----------YGPQFLRFHPSLTTR 280 (1118)
T ss_pred ----cceee--eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-----------cCchhhhhcccccce
Confidence 55544 5556888888874 456899999987766655442 12345667775 345
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
+++.+ ..|...+-|..+.... ..... ..+. ...+..+.+|++++.+|.+..+|.|.+|.
T Consensus 281 ~~V~S---------~sGq~q~vd~~~lsNP~~~~~~--v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 281 LAVTS---------QSGQFQFVDTATLSNPPAGVKM--VNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEEe---------cccceeeccccccCCCccceeE--EccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence 56665 6678888884433222 11111 1333 55699999999999999999999999998
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00082 Score=63.13 Aligned_cols=221 Identities=14% Similarity=0.093 Sum_probs=111.2
Q ss_pred ccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+++....+..++|.|+.+ ++++....+.|..++.. |+.++.+.-... +....+++..++.++++.-.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~---------~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGF---------GDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----------SSEEEEEE-STTEEEEEETTT
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCC---------CCceeEEEECCCEEEEEEcCC
Confidence 3455666799999999865 55555567788888864 788877653321 466889999888777776668
Q ss_pred ceEEEEEcCCCCce---eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC--C-Cc
Q 040987 468 YCIHFYSLLDDRGI---SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--Q-NK 541 (762)
Q Consensus 468 g~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~-~~ 541 (762)
+.+.++++...... .......-+. .......+..++|+|.++.|.++- +..-..+|.+.. . ..
T Consensus 86 ~~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~N~G~EGla~D~~~~~L~v~k---------E~~P~~l~~~~~~~~~~~ 154 (248)
T PF06977_consen 86 QRLYIFTIDDDTTSLDRADVQKISLGF--PNKGNKGFEGLAYDPKTNRLFVAK---------ERKPKRLYEVNGFPGGFD 154 (248)
T ss_dssp TEEEEEEE----TT--EEEEEEEE-----S---SS--EEEEEETTTTEEEEEE---------ESSSEEEEEEESTT-SS-
T ss_pred CcEEEEEEeccccccchhhceEEeccc--ccCCCcceEEEEEcCCCCEEEEEe---------CCCChhhEEEccccCccc
Confidence 99999998543321 1111111111 011245689999999988777775 333445555554 1 11
Q ss_pred eeEEEEE--e-ecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 542 EFTLSTI--V-YEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 542 ~~~~~~~--~-~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
....... . .... ...+.+++++|. +.+++.+..+..+..+|. .++.+....... ........-...-.|+|.
T Consensus 155 ~~~~~~~~~~~~~~~-~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~~~~~L~~--g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 155 LFVSDDQDLDDDKLF-VRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVVSSLSLDR--GFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp -EEEE-HHHH-HT---SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EEEEEE-ST--TGGG-SS---SEEEEEE-
T ss_pred eeeccccccccccce-eccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEEEEEEeCC--cccCcccccCCccEEEEC
Confidence 1111100 0 0112 446788999996 456666666777888884 444433221000 000000011345689999
Q ss_pred CCCcEEEEEcCCeEEEE
Q 040987 618 ADGSVLAVAAETVITLW 634 (762)
Q Consensus 618 ~dg~~la~~~d~~i~iw 634 (762)
++|++.+++--+..+++
T Consensus 231 ~~G~LYIvsEpNlfy~f 247 (248)
T PF06977_consen 231 PDGNLYIVSEPNLFYRF 247 (248)
T ss_dssp TT--EEEEETTTEEEEE
T ss_pred CCCCEEEEcCCceEEEe
Confidence 99988777765555544
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.013 Score=62.75 Aligned_cols=166 Identities=13% Similarity=0.054 Sum_probs=95.5
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCC--eEEEEeCC---CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP--LLYFTESP---DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~---~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
..++.++.++.+...|.++|+.......... -..+.-+| ++ .++++.. +|.|..+|.++|+.+..+..
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 4677788899999999999998643322110 01111122 34 4444432 68899999999999887654
Q ss_pred CCCCCC----------CCC-----------cccCce-eeEEEeCCCCEEEEeecC-----c-----------eEEEEEcC
Q 040987 435 IKLPCP----------LPE-----------EYKGLC-RDIAFNHDGGLVALRAEN-----Y-----------CIHFYSLL 476 (762)
Q Consensus 435 ~~~~~~----------~~~-----------~~~~~v-~~~~~s~~~~~l~~~~~d-----g-----------~i~i~d~~ 476 (762)
...... ... ...+.+ ..+++.|...++..+..+ + .|.-.|++
T Consensus 200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~ 279 (527)
T TIGR03075 200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD 279 (527)
T ss_pred cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence 322100 000 001122 235777766677666522 1 67778889
Q ss_pred CCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCce
Q 040987 477 DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 542 (762)
+++....++......-..+. .....-+.+..+|+ .++.+. .+|.+.+.|..+++.+
T Consensus 280 TG~~~W~~Q~~~~D~wD~d~-~~~p~l~d~~~~G~~~~~v~~~~---------K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 280 TGKIKWHYQTTPHDEWDYDG-VNEMILFDLKKDGKPRKLLAHAD---------RNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCEEEeeeCCCCCCccccC-CCCcEEEEeccCCcEEEEEEEeC---------CCceEEEEECCCCcee
Confidence 99887776654322111110 11122223335666 666666 8899999999998764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0086 Score=61.60 Aligned_cols=275 Identities=12% Similarity=0.034 Sum_probs=173.2
Q ss_pred EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC-cEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEE
Q 040987 377 LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN-QVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
+.+++..+...............+...+++..+++..... .+...+.. ....... .... .....+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~----------~~p~~i~v 81 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGG----------VYPAGVAV 81 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCC----------ccccceee
Confidence 4444444444332222223556677888886655544322 34444443 2111111 1100 23357888
Q ss_pred eCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 455 NHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 455 s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
++++..+... ..++.|.+.|..+.+........ .....++++|+++.+.++... ..++.+.+
T Consensus 82 ~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-----------~~P~~~~~~~~~~~vYV~n~~------~~~~~vsv 144 (381)
T COG3391 82 NPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-----------LGPVGLAVDPDGKYVYVANAG------NGNNTVSV 144 (381)
T ss_pred CCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-----------cCCceEEECCCCCEEEEEecc------cCCceEEE
Confidence 8888855544 44588999998777666655542 246789999999988888731 02578888
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeecccCCCCeE
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
.|..+........ .+. .+ ..++++|+|..++... .++.+.+.|........ -. ............
T Consensus 145 id~~t~~~~~~~~----vG~--~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~------~~~~~~~~~~P~ 210 (381)
T COG3391 145 IDAATNKVTATIP----VGN--TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS------VGSLVGVGTGPA 210 (381)
T ss_pred EeCCCCeEEEEEe----cCC--Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc------cccccccCCCCc
Confidence 8888887766532 222 23 7899999999666555 67899999976655442 10 000011234456
Q ss_pred EEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEE-eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 613 AAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAV-IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 613 ~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
.+.++|+|.++.+.. + +.+...|..++..... .......-..+.++|+|+.+.+....+ +.+.+-|..+..+..
T Consensus 211 ~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~-~~V~vid~~~~~v~~ 289 (381)
T COG3391 211 GIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQG-GTVSVIDGATDRVVK 289 (381)
T ss_pred eEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCC-CeEEEEeCCCCceee
Confidence 789999999877664 3 6999999999877765 221111356789999999999985552 249999999888877
Q ss_pred EEEEeec
Q 040987 688 SYLLHVE 694 (762)
Q Consensus 688 ~~~~~~~ 694 (762)
.+.....
T Consensus 290 ~~~~~~~ 296 (381)
T COG3391 290 TGPTGNE 296 (381)
T ss_pred eeccccc
Confidence 6655544
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0034 Score=61.78 Aligned_cols=250 Identities=12% Similarity=0.060 Sum_probs=136.5
Q ss_pred CCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee
Q 040987 404 PDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
..++.|+.|+.+| +.+++... ....+.... ..|..+...|+-+.+++-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~------------~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL------------SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeec------------ceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4578899998887 99999833 333322221 3588899999877766664 4899999987654443
Q ss_pred eEEeec--cc--ccCCCCcceeEEEEE---EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEEeecCC
Q 040987 483 EVQVCE--RN--HQPGDDVTVVVTLVA---LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTIVYEPH 553 (762)
Q Consensus 483 ~~~~~~--~~--~~~~~~~~~~v~~~~---~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~h 553 (762)
...... .. ....-.....+...+ -......|+++. ...|.+|......... .+.... -
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~----------kk~i~i~~~~~~~~~f~~~~ke~~---l 137 (275)
T PF00780_consen 71 TSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV----------KKKILIYEWNDPRNSFSKLLKEIS---L 137 (275)
T ss_pred ccccccccccccccccccccCCeeEEeeccccccceEEEEEE----------CCEEEEEEEECCcccccceeEEEE---c
Confidence 211000 00 000000022233333 223344556553 3488888887642221 222211 1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee-eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS-CHAVGSYKKKAMTAAAFSADGSVLAVAAETVIT 632 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~ 632 (762)
...+.+++|. ++.++.+..+ ...+.|+.++..........-. ..........++..+.. +++.+|++- |..-.
T Consensus 138 -p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~~g~ 211 (275)
T PF00780_consen 138 -PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DNIGV 211 (275)
T ss_pred -CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cceEE
Confidence 4578899998 5577777654 4888999876554433100000 00000011223333343 345666654 33333
Q ss_pred EEeCCCCeEEE--EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 633 LWDPDRNVLVA--VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 633 iwd~~~~~~~~--~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+.|.. |+..+ .+. -.....++++.. .+|+..+.++ |.||++.+++++..+..+.
T Consensus 212 fv~~~-G~~~r~~~i~-W~~~p~~~~~~~--pyli~~~~~~---iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 212 FVNKN-GEPSRKSTIQ-WSSAPQSVAYSS--PYLIAFSSNS---IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEcCC-CCcCcccEEE-cCCchhEEEEEC--CEEEEECCCE---EEEEECcCCcEEEEEECCC
Confidence 34443 43322 222 233455666644 5888887765 9999999999988877653
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.6e-05 Score=78.47 Aligned_cols=190 Identities=12% Similarity=0.125 Sum_probs=133.7
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
++..++.|+....+..+|+++.+..+...-.. +.+.-+ -.+++.+.+|...|+|.+-|..+.+.+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a----------~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA----------SGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFETIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC----------CceEEE--EecCcEEEeecccceEEeecCCcCceeeee
Confidence 44567777778888999999887776654322 233333 345789999999999999999999888877
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
..+ .+.+. +|+-.|+.|++++.........-|.-|+|||++.-+.+..++. + . .-.-+.|.
T Consensus 214 ~aH----------s~siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-----~-~-~P~flrf~ 274 (1118)
T KOG1275|consen 214 DAH----------SGSIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-----P-Y-GPQFLRFH 274 (1118)
T ss_pred ecc----------cccee--eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccc-----c-c-Cchhhhhc
Confidence 654 44454 4566799999998665554555688899999998776554432 1 1 12346677
Q ss_pred CC-CCeEEEEeCCCcEEEEEcc---cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEe
Q 040987 565 PN-RRAAVSSSYGGDFKVWICN---DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWD 635 (762)
Q Consensus 565 pd-~~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd 635 (762)
|. ...+++++..|...+-|.. +....... .......+..+.+|++|..||.|. +|.|.+|.
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~----------v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKM----------VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeE----------EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 74 3467778888999888833 22111111 112245589999999999999998 99999997
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0019 Score=60.74 Aligned_cols=197 Identities=11% Similarity=0.144 Sum_probs=108.1
Q ss_pred CceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
..+..++|+|+.+ ++++....+.|..++. +++.+.++.... ......+++..++.++++..
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g---------~~D~EgI~y~g~~~~vl~~E-------- 83 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG---------FGDYEGITYLGNGRYVLSEE-------- 83 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS----------SSEEEEEE-STTEEEEEET--------
T ss_pred CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC---------CCCceeEEEECCCEEEEEEc--------
Confidence 4689999999755 5566667788888886 466666665432 34578889988887777664
Q ss_pred CceeEEEEEEecCCCc---eeEEEEEe--ec-CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc---ccccccccCC
Q 040987 526 GSLVCLKFWVSGTQNK---EFTLSTIV--YE-PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND---ELQQKDLQSS 596 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~---~~~~~~~~--~~-~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~ 596 (762)
.++.+.++++..... ........ .. .+ ...+-.++|+|.++.|+.+-+..-..+|.+.. ..........
T Consensus 84 -r~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~-N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 84 -RDQRLYIFTIDDDTTSLDRADVQKISLGFPNKG-NKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp -TTTEEEEEEE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-H
T ss_pred -CCCcEEEEEEeccccccchhhceEEecccccCC-CcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecccc
Confidence 678999999854322 11111111 11 23 56789999999888887777776677777764 1111111000
Q ss_pred ceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEEEEecccc---------CceeEEEEeCCCCEEE
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLVAVIGETL---------TPIMNMSFVGSSEYLV 665 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~~~l~~~~---------~~v~~~~~s~dg~~l~ 665 (762)
.+.. .......+.+++++|.. .+++.+. ...|..+| .+|+.+..+.-.. ..-..++|.++|++.+
T Consensus 162 ~~~~---~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI 237 (248)
T PF06977_consen 162 DLDD---DKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI 237 (248)
T ss_dssp HHH----HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE
T ss_pred cccc---ccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE
Confidence 1110 11234567899999865 4555555 78999999 5576665542211 2367899999996555
Q ss_pred EE
Q 040987 666 AT 667 (762)
Q Consensus 666 s~ 667 (762)
+.
T Consensus 238 vs 239 (248)
T PF06977_consen 238 VS 239 (248)
T ss_dssp EE
T ss_pred Ec
Confidence 44
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0053 Score=62.55 Aligned_cols=275 Identities=15% Similarity=0.105 Sum_probs=135.0
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC---------
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS--------- 425 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~--------- 425 (762)
.|+.+.|.++..-|+.+...|.|.+|.....+... .....+-..+.+.+- ...++.-.+.|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~g 75 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG-NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKEG 75 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--------GGGSS-SEEE-GGG--TT-SEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC-ccCCCcccCcccccc------cccCCCcceEEehhhCCcccccc
Confidence 47899999998899999999999999876654321 000001111111110 00111112222211
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+...+.... +.|.+++.| |=-++++|+.+|.+.+.|++....+....... +.........++++.
T Consensus 76 f~P~~l~~~~~----------g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~--~~~~~~~~~~vt~ie 142 (395)
T PF08596_consen 76 FLPLTLLDAKQ----------GPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRE--SFLSKSSSSYVTSIE 142 (395)
T ss_dssp EEEEEEE---S-----------SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG----T-SS----EEEEE
T ss_pred cCchhheeccC----------CcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccc--cccccccccCeeEEE
Confidence 11222222222 788999987 44589999999999999998877666533222 111122255678888
Q ss_pred Eec-----CC---CeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEee-cCCCCCceEEEE-EcCC-C------
Q 040987 506 LSQ-----DG---SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVY-EPHRDAGISAVA-FHPN-R------ 567 (762)
Q Consensus 506 ~sp-----~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~-~~h~~~~v~~~~-~spd-~------ 567 (762)
|+- |+ -.+.+|. ..|.+.+|.+.- ....+....... ..+ .+.|..+. ++.+ |
T Consensus 143 F~vm~~~~D~ySSi~L~vGT---------n~G~v~~fkIlp~~~g~f~v~~~~~~~~~-~~~i~~I~~i~~~~G~~a~At 212 (395)
T PF08596_consen 143 FSVMTLGGDGYSSICLLVGT---------NSGNVLTFKILPSSNGRFSVQFAGATTNH-DSPILSIIPINADTGESALAT 212 (395)
T ss_dssp EEEEE-TTSSSEEEEEEEEE---------TTSEEEEEEEEE-GGG-EEEEEEEEE--S-S----EEEEEETTT--B-B-B
T ss_pred EEEEecCCCcccceEEEEEe---------CCCCEEEEEEecCCCCceEEEEeeccccC-CCceEEEEEEECCCCCcccCc
Confidence 863 33 4677777 778999998752 222222221111 234 45555444 3222 1
Q ss_pred --------------CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc-----CCCcEEEEEc-
Q 040987 568 --------------RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-----ADGSVLAVAA- 627 (762)
Q Consensus 568 --------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~la~~~- 627 (762)
.+++.++ +..++++...+.+...... ........+.+- ..+..|++-.
T Consensus 213 ~~~~~~l~~g~~i~g~vVvvS-e~~irv~~~~~~k~~~K~~-----------~~~~~~~~~~vv~~~~~~~~~~Lv~l~~ 280 (395)
T PF08596_consen 213 ISAMQGLSKGISIPGYVVVVS-ESDIRVFKPPKSKGAHKSF-----------DDPFLCSSASVVPTISRNGGYCLVCLFN 280 (395)
T ss_dssp HHHHHGGGGT----EEEEEE--SSEEEEE-TT---EEEEE------------SS-EEEEEEEEEEEE-EEEEEEEEEEET
T ss_pred hhHhhccccCCCcCcEEEEEc-ccceEEEeCCCCcccceee-----------ccccccceEEEEeecccCCceEEEEEEC
Confidence 1444444 6679999988766544331 011122233342 2445555555
Q ss_pred CCeEEEEeCCCCeEEEEecccc----CceeEEEEeCCCCEEEEEEcCC
Q 040987 628 ETVITLWDPDRNVLVAVIGETL----TPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 628 d~~i~iwd~~~~~~~~~l~~~~----~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
+|.|++|.+-.-+.+..+.-+. ..+....|+++|..++-.+...
T Consensus 281 ~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE 328 (395)
T PF08596_consen 281 NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSE 328 (395)
T ss_dssp TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSE
T ss_pred CCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCccc
Confidence 9999999999988888775432 2356677888888777776654
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0074 Score=62.05 Aligned_cols=264 Identities=13% Similarity=0.055 Sum_probs=169.1
Q ss_pred ceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~ 431 (762)
....+...+++..++.... ...+...+............+ .....++.++++..+++.. .++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 3455677778755544432 224555554422222222222 3445678888888665554 468999999887766666
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec---CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE---NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..... ....++++|+++.+.++.. ++.+.+.|..+.+........ .. ...++++|
T Consensus 112 ~~vG~-----------~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----------~~-P~~~a~~p 169 (381)
T COG3391 112 IPVGL-----------GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----------NT-PTGVAVDP 169 (381)
T ss_pred eeecc-----------CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----------CC-cceEEECC
Confidence 54322 3468999999987777655 689999999988877764331 12 28899999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEcc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICN 585 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~ 585 (762)
+|+.+..... .++.|.+.|..+..... -......+- ...-..+.++|+|.++...... +.+...|..
T Consensus 170 ~g~~vyv~~~--------~~~~v~vi~~~~~~v~~-~~~~~~~~~-~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~ 239 (381)
T COG3391 170 DGNKVYVTNS--------DDNTVSVIDTSGNSVVR-GSVGSLVGV-GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTA 239 (381)
T ss_pred CCCeEEEEec--------CCCeEEEEeCCCcceec-ccccccccc-CCCCceEEECCCCCEEEEEeccCCCceEEEEeCC
Confidence 9998777753 67899999977664442 100000111 2344578999999976665443 588888888
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccC---ceeEEEEeCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLT---PIMNMSFVGS 660 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~---~v~~~~~s~d 660 (762)
++....... ..... ....+..+|+|+.+.+.. .+.+.+-|..+............ .+..+++.+.
T Consensus 240 ~~~v~~~~~---------~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 240 TGNVTATDL---------PVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred CceEEEecc---------ccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 776554310 00112 455789999999998885 58999999999877776543332 2555666553
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.004 Score=64.40 Aligned_cols=228 Identities=12% Similarity=0.092 Sum_probs=119.1
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|.+|+.. |+.+..+.-.. +.+..+.|+.+.+ |++...||.+++||+.... ...+....... .-
T Consensus 62 ~I~iys~s-G~ll~~i~w~~----------~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~---~v 125 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS----------GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEF-QFSLGEEIEEE---KV 125 (410)
T ss_pred EEEEECCC-CCEeEEEEECC----------CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCce-eechhhhcccc---Cc
Confidence 47777765 55555554433 5788999998654 5566799999999986433 11111100000 00
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeEEE---EEeecCCCCCceE-EEEEcCCCCeEE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFTLS---TIVYEPHRDAGIS-AVAFHPNRRAAV 571 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~~~---~~~~~~h~~~~v~-~~~~spd~~~l~ 571 (762)
....+....+..+|-.+.+.+ +.+.+.+-.... ....+. ......+...... ...++.+....+
T Consensus 126 ~e~~i~~~~~~~~GivvLt~~-----------~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i 194 (410)
T PF04841_consen 126 LECRIFAIWFYKNGIVVLTGN-----------NRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEI 194 (410)
T ss_pred ccccccccccCCCCEEEECCC-----------CeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEE
Confidence 012223334444554444432 333333221111 111111 0000001000111 123444555555
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-c
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-L 649 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-~ 649 (762)
....++.+.+.+-..... . ...+++..|+.||+|++||.-. +|.+.+.+.+-.+.+..+... .
T Consensus 195 ~~~~g~~i~~i~~~~~~~---i------------~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 195 LLANGETIYIIDENSFKQ---I------------DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EEecCCEEEEEEcccccc---c------------cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 555555565444332111 1 1246899999999999999887 899999987766666666433 3
Q ss_pred CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 650 TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
.....+.|..+...++.- .+. |.+.........+.+.
T Consensus 260 ~~p~~~~WCG~dav~l~~-~~~---l~lvg~~~~~~~~~~~ 296 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW-EDE---LLLVGPDGDSISFWYD 296 (410)
T ss_pred CCCcEEEEECCCcEEEEe-CCE---EEEECCCCCceEEecc
Confidence 456788998876555444 333 7776655554444443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.016 Score=60.03 Aligned_cols=263 Identities=11% Similarity=0.077 Sum_probs=128.0
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.|.+|+..........-..+.+.++.|+.+..++ +...+|.+++||+.. +. .+.-.. ........+..+....+.
T Consensus 62 ~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G-~~--~fsl~~-~i~~~~v~e~~i~~~~~~ 136 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELV-VVQSDGTVRVYDLFG-EF--QFSLGE-EIEEEKVLECRIFAIWFY 136 (410)
T ss_pred EEEEECCCCCEeEEEEECCCCEEEEEECCCCeEE-EEEcCCEEEEEeCCC-ce--eechhh-hccccCcccccccccccC
Confidence 5889987755543333233789999999876555 455999999999873 33 221110 000000011222222333
Q ss_pred CCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW 534 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw 534 (762)
.+| ++.-..++.+.+.+-.... ....+.....................++.+....+... .++.+.+.
T Consensus 137 ~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~---------~g~~i~~i 205 (410)
T PF04841_consen 137 KNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA---------NGETIYII 205 (410)
T ss_pred CCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe---------cCCEEEEE
Confidence 344 3333445555444332221 11111100000000000000000123444444444333 33445433
Q ss_pred EecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 535 VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 535 d~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
+...... + .. .+++..+++||+|+++|.-..+|.+.+....-.+...... . ........|
T Consensus 206 ~~~~~~~---i------~~-~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~---------~-~~~~~p~~~ 265 (410)
T PF04841_consen 206 DENSFKQ---I------DS-DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD---------T-DSKSPPKQM 265 (410)
T ss_pred Ecccccc---c------cC-CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee---------c-CcCCCCcEE
Confidence 3222111 1 11 4589999999999999999999999888765444332221 0 112344455
Q ss_pred EEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 615 AFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 615 ~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
.|.-+ |..+.-|+ ..+..+..... .+.|.-++..++..-.|| |+|..-+..+.+......
T Consensus 266 ~WCG~--------dav~l~~~----~~l~lvg~~~~---~~~~~~~~~~~l~~E~DG---~riit~~~~~~l~~Vp~~ 325 (410)
T PF04841_consen 266 AWCGN--------DAVVLSWE----DELLLVGPDGD---SISFWYDGPVILVSEIDG---VRIITSTSHEFLQRVPDS 325 (410)
T ss_pred EEECC--------CcEEEEeC----CEEEEECCCCC---ceEEeccCceEEeccCCc---eEEEeCCceEEEEECCHH
Confidence 55444 44444441 12222221221 245555666677777788 999977766666544433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0075 Score=59.01 Aligned_cols=238 Identities=15% Similarity=0.012 Sum_probs=130.7
Q ss_pred EEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 400 FTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 400 ~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
..|.++...|+.. -..+.|.-|+..+++...-... +.+.++..-..+..|+++ ..| +.+++..++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p------------~~~~~~~~~d~~g~Lv~~-~~g-~~~~~~~~~ 95 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSP------------GGFSSGALIDAGGRLIAC-EHG-VRLLDPDTG 95 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECC------------CCcccceeecCCCeEEEE-ccc-cEEEeccCC
Confidence 3456666644443 3466788888876543322211 223333333333344443 333 667777555
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee--ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCC
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK--LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDA 556 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~--~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~ 556 (762)
.....+.....+.. ....+.....|+|.+.++.... ........-+.++.++. .+.....+ ..+ -.
T Consensus 96 ~~~t~~~~~~~~~~-----~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~-----~~~-~~ 163 (307)
T COG3386 96 GKITLLAEPEDGLP-----LNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLL-----DDD-LT 163 (307)
T ss_pred ceeEEeccccCCCC-----cCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEee-----cCc-EE
Confidence 44333322222111 3556788899999877765430 01111112334444443 33333322 222 33
Q ss_pred ceEEEEEcCCCCeEEEEeCC-CcEEEEEccc--ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-eE
Q 040987 557 GISAVAFHPNRRAAVSSSYG-GDFKVWICND--ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET-VI 631 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~d-g~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~-~i 631 (762)
.-+.++||||++.|..+... +.|.-|++.. +..... ..........+..-.++...+|.+-+++. +| .|
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~------~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v 237 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR------RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRV 237 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc------ceEEEccCCCCCCCceEEeCCCCEEEecccCCceE
Confidence 44689999999887776553 6777777763 111100 01111222345555677778888876554 43 99
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeC-CCCEEEEEEcC
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVG-SSEYLVATSWG 670 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d 670 (762)
.+|+.+ |+++..+.-+...+++++|-. +.+.|...+..
T Consensus 238 ~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 238 VRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 999999 999998887777788888875 45555555443
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0018 Score=65.92 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=137.0
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee-cc---cccccccccccccCCCCccc---------CCccccceee
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA-TN---DNKMNLNLMNNEEERPGVRD---------NDDADLCTTW 349 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 349 (762)
.|+.+.|+++..-|++|...|.|-||....++... .. ........+........+.. .....+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57899999998899999999999999887665443 00 00001111111111111111 0112344455
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc---CC------CCCCeEEEEeC-----CCC---CeEEEE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL---PR------IGSPLLYFTES-----PDP---SLSSIS 412 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~---~~------~~~~v~~~~~s-----~~~---~~l~~~ 412 (762)
+...+.|++++.|.= -+++.|..+|.+.+.|++....++. .. ....++++.|+ .|+ -.+++|
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 667889999999754 4999999999999999987766432 11 23357777775 233 468889
Q ss_pred ecCCcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCceeeEE-EeCCC--------------------CEEEEeecCc
Q 040987 413 CADNQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLCRDIA-FNHDG--------------------GLVALRAENY 468 (762)
Q Consensus 413 ~~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~s~~~--------------------~~l~~~~~dg 468 (762)
+..|.+.+|.+.- +.-...+.+.. ..+++.+..+. ++.+. ..+++...+.
T Consensus 162 Tn~G~v~~fkIlp~~~g~f~v~~~~~~------~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~ 235 (395)
T PF08596_consen 162 TNSGNVLTFKILPSSNGRFSVQFAGAT------TNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSES 235 (395)
T ss_dssp ETTSEEEEEEEEE-GGG-EEEEEEEEE--------SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SS
T ss_pred eCCCCEEEEEEecCCCCceEEEEeecc------ccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEccc
Confidence 9999999997641 22111111111 00113333333 32211 1233344556
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE-----ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL-----SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
.++++...+.+...+... . ......+.+ ...+..|++-. .+|.+++|.+..-+.+.
T Consensus 236 ~irv~~~~~~k~~~K~~~--~--------~~~~~~~~vv~~~~~~~~~~Lv~l~---------~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFD--D--------PFLCSSASVVPTISRNGGYCLVCLF---------NNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEEEE-TT---EEEEE-S--S---------EEEEEEEEEEEE-EEEEEEEEEEE---------TTSEEEEEETTT--EEE
T ss_pred ceEEEeCCCCcccceeec--c--------ccccceEEEEeecccCCceEEEEEE---------CCCcEEEEECCCchHhh
Confidence 799999987765443321 1 122233334 23566677776 88999999999887776
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.+... ...+ ...+....++++|..++-.+. ..+.++.+
T Consensus 297 ~~~l~-~~~d-~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 297 SVSLP-PPLD-SRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEE-S-S----HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred cccCC-Cccc-cccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 66431 0112 234556778888987766653 34555444
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.3e-06 Score=84.38 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=121.5
Q ss_pred ceeEEEEecCCCeEEEEecCCcc---eeeeecCcccccCCceeec-CCCEEEEEeC-----CEEEEEEcccce--EE--e
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVN---SKMIRGGRSYVSSPPAFSN-DVKRLLVCTS-----NTVSIFSTSTGL--QI--S 108 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~---~~~~~~h~~~v~~~~~~s~-dg~~la~~~~-----~~i~iwd~~~~~--~~--~ 108 (762)
+..++|+|..+|.|.+-.+.... .....+|..+-++ ++|++ |-.+||+|-+ ..+.|||+.++- +. .
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~-lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~ 147 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTS-LAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP 147 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceecccccccccc-cccccccHHHHHhhhhhhcccCCccceecccccCCCcccc
Confidence 46899999999999998877432 4456888888887 99987 5678888864 689999998761 11 1
Q ss_pred eecC-CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCce
Q 040987 109 SLEG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 109 ~l~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 187 (762)
.|.+ -.....+++|..+. +++.+|...+.+.++|++...
T Consensus 148 ~fs~~~l~gqns~cwlrd~-------klvlaGm~sr~~~ifdlRqs~--------------------------------- 187 (783)
T KOG1008|consen 148 LFSSSTLDGQNSVCWLRDT-------KLVLAGMTSRSVHIFDLRQSL--------------------------------- 187 (783)
T ss_pred ccccccccCccccccccCc-------chhhcccccchhhhhhhhhhh---------------------------------
Confidence 1222 23344566666555 555677777777777765210
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC-CCCEEEEEeCCeEEEEEc-cC
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS-SGKYFGIRKQRKLLIWKV-PD 265 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~~~~~i~iwd~-~~ 265 (762)
. ....-.+..+..+...| .+.|+++..++.|.+||. ..
T Consensus 188 --------------------------------------~--~~~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rn 227 (783)
T KOG1008|consen 188 --------------------------------------D--SVSSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRN 227 (783)
T ss_pred --------------------------------------h--hhhhhhhhhcccceecCCCCCceeccccCceeeccchhh
Confidence 0 00111234566778888 888999888999999994 33
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeec-CCeEEEEeccC
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDV-TGRILIWRGFG 312 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~-dg~v~vw~~~~ 312 (762)
-+...+.+..........+..++|.|... .+++... .++|+++++..
T Consensus 228 ienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 228 IENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred hccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 22211111111111223589999999433 4555554 57899999753
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.01 Score=54.76 Aligned_cols=220 Identities=11% Similarity=0.056 Sum_probs=135.8
Q ss_pred ceeeEEEeCCC-CEEEEeecCce-EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 448 LCRDIAFNHDG-GLVALRAENYC-IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 448 ~v~~~~~s~~~-~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
....++++|.. +-++.+-.-|+ ..++|....+.+..+......| ..-.=.|||||.+|.....+. +
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH--------fyGHGvfs~dG~~LYATEndf--d-- 136 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH--------FYGHGVFSPDGRLLYATENDF--D-- 136 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce--------eecccccCCCCcEEEeecCCC--C--
Confidence 34568888854 44666666664 5689998888777766554422 334458999999999886443 1
Q ss_pred CceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC------------------CCcEEEEEccc
Q 040987 526 GSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY------------------GGDFKVWICND 586 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~------------------dg~i~iwd~~~ 586 (762)
...|.|-+||.+.+- .+-++ ..| .-.-..+.|.+||+.++.+.. .-.+.+.|..+
T Consensus 137 ~~rGViGvYd~r~~fqrvgE~-----~t~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 137 PNRGVIGVYDAREGFQRVGEF-----STH-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred CCCceEEEEecccccceeccc-----ccC-CcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 256899999988432 22223 344 445567999999999987742 01233334334
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc------CCeEEEEeCCCCeEEEEeccc-------cCcee
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA------ETVITLWDPDRNVLVAVIGET-------LTPIM 653 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~------d~~i~iwd~~~~~~~~~l~~~-------~~~v~ 653 (762)
+..+.... . ....+...|..++..+||+.++.+- |.--.+=-...++.+..+... ..-|-
T Consensus 211 G~liekh~---L----p~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYig 283 (366)
T COG3490 211 GNLIEKHT---L----PASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIG 283 (366)
T ss_pred cchhhhcc---C----chhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhh
Confidence 43332221 0 0113456788888888888776542 111122222334444443221 23377
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+++.+.+..+++..+..|. ...+||..+|+++..-....
T Consensus 284 siA~n~~~glV~lTSP~GN-~~vi~da~tG~vv~~a~l~d 322 (366)
T COG3490 284 SIAANRRDGLVALTSPRGN-RAVIWDAATGAVVSEAALPD 322 (366)
T ss_pred heeecccCCeEEEecCCCC-eEEEEEcCCCcEEecccccc
Confidence 8888887778888887774 69999999999987665544
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.05 Score=57.23 Aligned_cols=250 Identities=14% Similarity=0.080 Sum_probs=134.5
Q ss_pred EEEEeCCCCCeEEEEec-CC----cEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-----
Q 040987 398 LYFTESPDPSLSSISCA-DN----QVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----- 466 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~-d~----~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----- 466 (762)
....+||||++++.+-. .| .++++|+.+++.+... ... ....+.|.+|++.++....
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------------~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------------KFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------------ESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------------ccceEEEeCCCCEEEEEEeCcccc
Confidence 35788999999987643 33 5999999999776542 221 1233999999988776653
Q ss_pred ------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce-eEEEEEEecCC
Q 040987 467 ------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL-VCLKFWVSGTQ 539 (762)
Q Consensus 467 ------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d-~~i~iwd~~~~ 539 (762)
...|+.|.+.+...-..+....... ......+..++|+++|+..... + .+ ..+.+.++...
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~------~~~~~~~~~s~d~~~l~i~~~~----~--~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDE------PFWFVSVSRSKDGRYLFISSSS----G--TSESEVYLLDLDDG 262 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTC------TTSEEEEEE-TTSSEEEEEEES----S--SSEEEEEEEECCCT
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCC------CcEEEEEEecCcccEEEEEEEc----c--ccCCeEEEEecccc
Confidence 3347888887665443333322211 1225678899999998876531 1 33 67888888875
Q ss_pred ----CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---CCcEEEEEcccccccccccCCceeeeeecccCCC--C
Q 040987 540 ----NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK--A 610 (762)
Q Consensus 540 ----~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 610 (762)
.....+. ... .+....+... .+.+++.... .+.|...++...... .|... ...+.. .
T Consensus 263 ~~~~~~~~~l~----~~~-~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~------~~~~~--l~~~~~~~~ 328 (414)
T PF02897_consen 263 GSPDAKPKLLS----PRE-DGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA------EWWTV--LIPEDEDVS 328 (414)
T ss_dssp TTSS-SEEEEE----ESS-SS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG------GEEEE--EE--SSSEE
T ss_pred CCCcCCcEEEe----CCC-CceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc------cceeE--EcCCCCcee
Confidence 2222221 111 2222333333 4444444432 245655666655421 11111 112333 3
Q ss_pred eEEEEEcCCCcEEEEEc--C--CeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEE--EEcCCCCeEEEEECCCC
Q 040987 611 MTAAAFSADGSVLAVAA--E--TVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVA--TSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 611 i~~~~~s~dg~~la~~~--d--~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s--~~~d~~~~v~vwd~~~~ 683 (762)
+..+. ..+.+|+... + ..|+++++..+.....+.. -.+.|..+...+++..+.. .|.-..++++.||+.++
T Consensus 329 l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~ 406 (414)
T PF02897_consen 329 LEDVS--LFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATG 406 (414)
T ss_dssp EEEEE--EETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEE--EECCEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 44444 4455555543 4 4689999994444333332 2344666665565554433 33333345999999999
Q ss_pred ceee
Q 040987 684 SISW 687 (762)
Q Consensus 684 ~~~~ 687 (762)
+...
T Consensus 407 ~~~~ 410 (414)
T PF02897_consen 407 ELTL 410 (414)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 8754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.019 Score=56.54 Aligned_cols=244 Identities=16% Similarity=0.099 Sum_probs=130.2
Q ss_pred cCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc---CCCC-
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG---IKLP- 438 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~- 438 (762)
..++.|+.|..+| +++++...............|..+...++-+.+++- .|+.++++++........... .+..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEE-cCCccEEEEchhhcccccccccccccccc
Confidence 3577899998888 899998332222222222339999998887777766 459999999987443331110 0000
Q ss_pred CCCCCcccCceeeEE--EeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 439 CPLPEEYKGLCRDIA--FNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~--~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..........+..++ -...+...++......|.+|..... +...++.. ...+..++|. ++
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~l-----------p~~~~~i~~~--~~ 149 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISL-----------PDPPSSIAFL--GN 149 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEc-----------CCCcEEEEEe--CC
Confidence 000000012333333 1123333333444458888887653 23333333 4568888888 55
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-------cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-------EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.++.+. .....+.|+.++.....+..... ... ..++..+... ++.+|++. |..-.+.|.
T Consensus 150 ~i~v~~----------~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~ 215 (275)
T PF00780_consen 150 KICVGT----------SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSS-SKPLGIFQLS-DNEFLLCY--DNIGVFVNK 215 (275)
T ss_pred EEEEEe----------CCceEEEecCCCCceEEeCccCCcchhhhcccC-CCceEEEEeC-CceEEEEe--cceEEEEcC
Confidence 666664 24678888886654332211000 000 1233333333 44555543 333333444
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccc
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~ 648 (762)
. |+..... .-.| ...+.++++ ...+|+.-.++.|.||++.++++++.+...
T Consensus 216 ~-G~~~r~~-~i~W---------~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~ 266 (275)
T PF00780_consen 216 N-GEPSRKS-TIQW---------SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLP 266 (275)
T ss_pred C-CCcCccc-EEEc---------CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECC
Confidence 3 3222200 0012 234455665 334877777777999999999999988644
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0055 Score=56.42 Aligned_cols=245 Identities=9% Similarity=0.016 Sum_probs=136.2
Q ss_pred eeEEEEecCC-CEEEEEecCCe-EEEEecCCCceec-cCCC--CCCeEEEEeCCCCCeEEEEecC-----CcEEEEEcCC
Q 040987 356 VSVLIFSSDG-AYLYSGGKEGV-LVVWQLDTGKKKF-LPRI--GSPLLYFTESPDPSLSSISCAD-----NQVHLLKMPS 425 (762)
Q Consensus 356 v~~~~~s~~g-~~l~s~~~dg~-i~~wd~~~~~~~~-~~~~--~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~ 425 (762)
-..++|+|.. .-++.+-.-|+ ..++|..+.+... +... ..-.-.-.|||||.+|+..-.| |.|-|||.+.
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~ 149 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE 149 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence 3457788754 34556655555 5678888776532 2111 1122234789999999986443 5799999875
Q ss_pred -ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------------------ceEEEEEcCCCCceeeEEe
Q 040987 426 -MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------------------YCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 426 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------------g~i~i~d~~~~~~~~~~~~ 486 (762)
.+.+.++..|. -....+.+.+||+.++.+... -.+.+.|..++..+.+...
T Consensus 150 ~fqrvgE~~t~G----------iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~L 219 (366)
T COG3490 150 GFQRVGEFSTHG----------IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTL 219 (366)
T ss_pred ccceecccccCC----------cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccC
Confidence 34455565554 344679999999998876431 1234445445544443333
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE--EeecCCCCCceEEEEEc
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST--IVYEPHRDAGISAVAFH 564 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~~~h~~~~v~~~~~s 564 (762)
.. +.+...+..++..+||..++.+....+.+ |.--.+=-...++....+.. .....- ...|-+++.+
T Consensus 220 p~------~l~~lSiRHld~g~dgtvwfgcQy~G~~~----d~ppLvg~~~~g~~l~~~~~pee~~~~~-anYigsiA~n 288 (366)
T COG3490 220 PA------SLRQLSIRHLDIGRDGTVWFGCQYRGPRN----DLPPLVGHFRKGEPLEFLDLPEEQTAAF-ANYIGSIAAN 288 (366)
T ss_pred ch------hhhhcceeeeeeCCCCcEEEEEEeeCCCc----cCCcceeeccCCCcCcccCCCHHHHHHH-Hhhhhheeec
Confidence 21 12266789999999998877765332111 11111111111221111110 000011 3467788888
Q ss_pred CCCCeEEEEeCC-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 565 PNRRAAVSSSYG-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 565 pd~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
.+..+++..+-. +...+||..++..+.... -.....++-. .+-+.++.++|.+.++.
T Consensus 289 ~~~glV~lTSP~GN~~vi~da~tG~vv~~a~-------------l~daaGva~~-~~gf~vssg~G~~~~~s 346 (366)
T COG3490 289 RRDGLVALTSPRGNRAVIWDAATGAVVSEAA-------------LPDAAGVAAA-KGGFAVSSGQGRIIFYS 346 (366)
T ss_pred ccCCeEEEecCCCCeEEEEEcCCCcEEeccc-------------ccccccceec-cCceEEecCCceEEecc
Confidence 766666665544 457789999998765542 1122223321 23355555588888874
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=1.9e-05 Score=79.91 Aligned_cols=186 Identities=12% Similarity=0.161 Sum_probs=124.1
Q ss_pred CCCCccccEEEEecCCcccc-ceeeeccCCCceEEEECC-CCCEEEEE-----eCCeEEEEEccCchhhhheeeeeeecc
Q 040987 208 RPNTMNGRICKCNLTESRLA-GGVTLAEMKEPQVITISS-SGKYFGIR-----KQRKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~sp-dg~~la~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
+.|..+|.|.+-..+...-. .....++....++++|++ |.+.||+| .+..+.|||+.++-..+.....+..+-
T Consensus 74 avG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~ 153 (783)
T KOG1008|consen 74 AVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSST 153 (783)
T ss_pred hhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcccccccccc
Confidence 78889999999988765544 456677888999999998 56788877 467899999988732211222233334
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.....+++|..+.+.+.+|.....+.++|++-.. .....-.+..+..+.
T Consensus 154 l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-------------------------------~~~~svnTk~vqG~t 202 (783)
T KOG1008|consen 154 LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-------------------------------DSVSSVNTKYVQGIT 202 (783)
T ss_pred ccCccccccccCcchhhcccccchhhhhhhhhhh-------------------------------hhhhhhhhhhcccce
Confidence 5567789999899999999988899999985211 011111233455677
Q ss_pred Eec-CCCEEEEEecCCeEEEEec-CCCce--eccCC----CCCCeEEEEeCCCCC--eEEEEecCCcEEEEEcCC
Q 040987 361 FSS-DGAYLYSGGKEGVLVVWQL-DTGKK--KFLPR----IGSPLLYFTESPDPS--LSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~-~g~~l~s~~~dg~i~~wd~-~~~~~--~~~~~----~~~~v~~~~~s~~~~--~l~~~~~d~~i~i~d~~~ 425 (762)
..| .++++++-. |+.|.+||. ..-+. +.... ....+..++|.|... ..+..-..++|++||+..
T Consensus 203 Vdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 203 VDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 777 677887765 899999994 32222 11111 223589999998543 333333467899998753
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.066 Score=56.33 Aligned_cols=248 Identities=13% Similarity=0.055 Sum_probs=131.7
Q ss_pred CeEEEEEcCCCcEEEEe-ecC----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 283 KLTVLAFHPTQRIVAAG-DVT----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~-~~d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
.+....+||||+++|.+ +.. ..++++|+.+++.+. ..+... ...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~-----------------------------d~i~~~--~~~ 173 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP-----------------------------DGIENP--KFS 173 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE-----------------------------EEEEEE--ESE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC-----------------------------Cccccc--ccc
Confidence 34467899999999865 222 369999998885543 122211 112
Q ss_pred EEEEecCCCEEEEEecC-----------CeEEEEecCCCcee--c-cCCCC-CC-eEEEEeCCCCCeEEEEecC----Cc
Q 040987 358 VLIFSSDGAYLYSGGKE-----------GVLVVWQLDTGKKK--F-LPRIG-SP-LLYFTESPDPSLSSISCAD----NQ 417 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~d-----------g~i~~wd~~~~~~~--~-~~~~~-~~-v~~~~~s~~~~~l~~~~~d----~~ 417 (762)
.+.|.+|++.|+....+ ..|+.|.+.+.... . +.... .. ...+..++|+++++..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 39999998887766533 34888888776542 2 22222 23 6688899999998865442 35
Q ss_pred EEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeE-Eeecc
Q 040987 418 VHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEV-QVCER 489 (762)
Q Consensus 418 i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~-~~~~~ 489 (762)
+++.++..+ .....+..... +....+... .+.+++... .++.|...++......... .....
T Consensus 254 v~~~d~~~~~~~~~~~~~l~~~~~---------~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~ 323 (414)
T PF02897_consen 254 VYLLDLDDGGSPDAKPKLLSPRED---------GVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE 323 (414)
T ss_dssp EEEEECCCTTTSS-SEEEEEESSS---------S-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred EEEEeccccCCCcCCcEEEeCCCC---------ceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC
Confidence 788888764 22333322220 222223333 333444332 2367777788776531111 11111
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.. ...+..+.. .+.+|+..... +....|+++++..+.....+. .+- .+.|..+...++++.
T Consensus 324 ~~------~~~l~~~~~--~~~~Lvl~~~~------~~~~~l~v~~~~~~~~~~~~~----~p~-~g~v~~~~~~~~~~~ 384 (414)
T PF02897_consen 324 DE------DVSLEDVSL--FKDYLVLSYRE------NGSSRLRVYDLDDGKESREIP----LPE-AGSVSGVSGDFDSDE 384 (414)
T ss_dssp SS------SEEEEEEEE--ETTEEEEEEEE------TTEEEEEEEETT-TEEEEEEE----SSS-SSEEEEEES-TT-SE
T ss_pred CC------ceeEEEEEE--ECCEEEEEEEE------CCccEEEEEECCCCcEEeeec----CCc-ceEEeccCCCCCCCE
Confidence 00 223444444 45555554321 155688999998333333332 222 445666666666654
Q ss_pred EEEE--eC--CCcEEEEEccccccc
Q 040987 570 AVSS--SY--GGDFKVWICNDELQQ 590 (762)
Q Consensus 570 l~~~--~~--dg~i~iwd~~~~~~~ 590 (762)
+... +. .+++..||+.+++..
T Consensus 385 ~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 385 LRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEEEeCCCCCCEEEEEECCCCCEE
Confidence 4332 22 357888888877653
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0064 Score=65.55 Aligned_cols=162 Identities=14% Similarity=0.172 Sum_probs=96.4
Q ss_pred ccccCCceeecCCCEEEEEe-------C--CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC-
Q 040987 73 SYVSSPPAFSNDVKRLLVCT-------S--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD- 142 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~-------~--~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d- 142 (762)
..+.. +++||||+.+|+.. + ..|.+++. .+.....+.+. ..+.-.|+||| ..|++.+..
T Consensus 350 ~~vss-paiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG-------~~lw~v~dg~ 418 (591)
T PRK13616 350 GNITS-AALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDA-------DAVWVVVDGN 418 (591)
T ss_pred cCccc-ceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCC-------CceEEEecCc
Confidence 45665 99999999998876 3 36666675 33332223333 38889999998 455565432
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
..+++.+- ...+.+.+.+++
T Consensus 419 ~~~~v~~~------------------------------------------------------------~~~gql~~~~vd 438 (591)
T PRK13616 419 TVVRVIRD------------------------------------------------------------PATGQLARTPVD 438 (591)
T ss_pred ceEEEecc------------------------------------------------------------CCCceEEEEecc
Confidence 12222221 112344444554
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEE---EEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLI---WKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~i---wd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
.++... ...+.|..+.|||||+.||...++.|.+ -....++............-...+.++.|.+++.++ ++
T Consensus 439 ~ge~~~----~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~ 513 (591)
T PRK13616 439 ASAVAS----RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VG 513 (591)
T ss_pred Cchhhh----ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEE-EE
Confidence 444431 3356799999999999999766788887 444445421111122233334446889999999854 55
Q ss_pred ecCCeEEEEec
Q 040987 300 DVTGRILIWRG 310 (762)
Q Consensus 300 ~~dg~v~vw~~ 310 (762)
..++...+|.+
T Consensus 514 ~~~~~~~v~~v 524 (591)
T PRK13616 514 RSDPEHPVWYV 524 (591)
T ss_pred ecCCCCceEEE
Confidence 55555555654
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=71.74 Aligned_cols=146 Identities=14% Similarity=0.078 Sum_probs=95.0
Q ss_pred CCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-------CeEEEEeeeccccCCCce
Q 040987 457 DGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-------SLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 457 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-------~~l~~~~~~~~~~~~~~d 528 (762)
+.++|+.. .....|+-.|+..|+.+.++..... .+|.. +.|+. .....|- .+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~---------~~v~~--~~p~~K~aqlt~e~tflGl---------s~ 551 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD---------IPVVD--IAPDSKFAQLTNEQTFLGL---------SD 551 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCC---------cceeE--ecccccccccCCCceEEEE---------CC
Confidence 33444433 3457899999999999888876422 22333 33321 2223333 55
Q ss_pred eEEEEEEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 529 VCLKFWVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 529 ~~i~iwd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
+.+..||++-... +..-....+ .. ....+|++-+.+| +||+|+.+|.||+||-........ +++-
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y-~~-~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~-----------lp~l 617 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQY-SS-KNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTA-----------LPGL 617 (794)
T ss_pred CceEEeccCCCCCceeecccccc-cc-CCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhc-----------CCCC
Confidence 7899999886432 111111111 22 5567888888776 688999999999999543222222 3355
Q ss_pred CCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 608 KKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
+.+|..+..+.||+||++..+..+.+++.
T Consensus 618 G~pI~~iDvt~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 618 GDPIIGIDVTADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCCeeEEEecCCCcEEEEeecceEEEEEE
Confidence 79999999999999999888888888885
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.042 Score=55.41 Aligned_cols=172 Identities=18% Similarity=0.194 Sum_probs=105.1
Q ss_pred ccEEEEecCCc-----cccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCch-hhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTES-----RLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVE-AERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~ 287 (762)
|.|.++++... +..........++|.+++-- +.+|+++.++.|.+|++...+ .. . .........+.++
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~---~-~~~~~~~~~i~sl 135 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLL---K-KAFYDSPFYITSL 135 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEE---E-EEEE-BSSSEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEeecCEEEEEEccCcccch---h-hheecceEEEEEE
Confidence 99999999984 33323344557888888766 445888888999999999887 32 1 2222223356666
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
... ++++++|.....+.++..... ..+. . ..-......++++.|-++++
T Consensus 136 ~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~---------------------------~-va~d~~~~~v~~~~~l~d~~ 185 (321)
T PF03178_consen 136 SVF--KNYILVGDAMKSVSLLRYDEENNKLI---------------------------L-VARDYQPRWVTAAEFLVDED 185 (321)
T ss_dssp EEE--TTEEEEEESSSSEEEEEEETTTE-EE---------------------------E-EEEESS-BEEEEEEEE-SSS
T ss_pred ecc--ccEEEEEEcccCEEEEEEEccCCEEE---------------------------E-EEecCCCccEEEEEEecCCc
Confidence 554 558999988888888865432 1111 0 01112344578888886767
Q ss_pred EEEEEecCCeEEEEecCCC-------c--e--eccCCCCCCeEEE---EeCC--CCC------eEEEEecCCcEEEE
Q 040987 367 YLYSGGKEGVLVVWQLDTG-------K--K--KFLPRIGSPLLYF---TESP--DPS------LSSISCADNQVHLL 421 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~-------~--~--~~~~~~~~~v~~~---~~s~--~~~------~l~~~~~d~~i~i~ 421 (762)
.++.+..+|.+.++..... . . ......+..|+++ .+.| .+. .++.++.+|.|...
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 9999999999999877531 1 1 2233455677777 5555 222 37778888888744
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.1 Score=50.83 Aligned_cols=157 Identities=16% Similarity=0.217 Sum_probs=83.6
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
+.+..+..++||++++++.......-||.-.. ... ...+.. ...+..+.|+|++.+.+.+
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~--~w~--~~~r~~------~~riq~~gf~~~~~lw~~~---------- 204 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT--TWQ--PHNRNS------SRRIQSMGFSPDGNLWMLA---------- 204 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S--S-E--EEE--S------SS-EEEEEE-TTS-EEEEE----------
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc--cce--EEccCc------cceehhceecCCCCEEEEe----------
Confidence 67888889999999988876666667765322 111 111111 5679999999998887665
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
..+.|++=+.................. .-.+..++|.+++...++|+ .|.+ +...+.++ +|........
T Consensus 205 ~Gg~~~~s~~~~~~~~w~~~~~~~~~~-~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGk--------tW~~~~~~~~ 273 (302)
T PF14870_consen 205 RGGQIQFSDDPDDGETWSEPIIPIKTN-GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGK--------TWQKDRVGEN 273 (302)
T ss_dssp TTTEEEEEE-TTEEEEE---B-TTSS---S-EEEEEESSSS-EEEEES-TT-E-EEESSTTS--------S-EE-GGGTT
T ss_pred CCcEEEEccCCCCccccccccCCcccC-ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCc--------cceECccccC
Confidence 556777766221111111100000011 33588999999988877665 4543 34444443 4444433334
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
-....+.+.|.++.+-++.|.+|.|.-|
T Consensus 274 ~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 4667889999988888999999987655
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=63.02 Aligned_cols=193 Identities=13% Similarity=-0.000 Sum_probs=104.9
Q ss_pred CceeeEEEeCCCCEEEEee------cCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 447 GLCRDIAFNHDGGLVALRA------ENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~------~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+.+.+++|||+.++... .|+ .|.+++. +.....+.. ......-.|+|||+.+++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~~lt~-----------g~~~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL--GGVAVQVLE-----------GHSLTRPSWSLDADAVWVVVD 416 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC--CCcceeeec-----------CCCCCCceECCCCCceEEEec
Confidence 3567899999999988765 233 4555554 222222211 123677899999998888752
Q ss_pred eccc---cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE---EEccccccccc
Q 040987 519 KLAE---EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV---WICNDELQQKD 592 (762)
Q Consensus 519 ~~~~---~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i---wd~~~~~~~~~ 592 (762)
.... ......+.+.+.+++.+.... .. .+.|..+.|||||..++... ++.|++ -....+. ...
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~ge~~~--------~~-~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~-~~l 485 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDASAVAS--------RV-PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ-YAL 485 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCchhhh--------cc-CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc-eee
Confidence 1000 000012334433444332211 11 45799999999999998876 477776 3433443 111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEecc--ccCceeEEEEeCCCCEEEEEE
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGE--TLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~ 668 (762)
.. .......-...+.++.|.+++.+++... +..+...++.... ...+.+ ...++..++=+++ .|+...
T Consensus 486 ~~-----~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~ 557 (591)
T PRK13616 486 TN-----PREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTD 557 (591)
T ss_pred cc-----cEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEc
Confidence 10 1111122234468899999999664433 3445555555332 222222 2455766766653 455555
Q ss_pred cCC
Q 040987 669 WGS 671 (762)
Q Consensus 669 ~d~ 671 (762)
.++
T Consensus 558 ~~g 560 (591)
T PRK13616 558 ARA 560 (591)
T ss_pred CCc
Confidence 565
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.02 Score=57.68 Aligned_cols=191 Identities=13% Similarity=0.088 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC----CCeEEEEeeeccccCC-CceeEEEEEEecCC-Cc
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD----GSLMSTVDIKLAEEGI-GSLVCLKFWVSGTQ-NK 541 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----g~~l~~~~~~~~~~~~-~~d~~i~iwd~~~~-~~ 541 (762)
..|++.|..+.+.+..+......+ ...+..+.+..+ ..++++|......+.. ...|.|.++++... ..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~------~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~ 75 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEH------VTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN 75 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEE------EEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---
T ss_pred cEEEEEeCCCCeEEEEEECCCCce------EEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEccccc
Confidence 358889988888776666553322 223334444433 5678887754322221 12399999999984 21
Q ss_pred eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-ccccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 542 EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 542 ~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
...+........ .+.|++++-- +++ |+.+. .+.|.+|++...+ ....- .. .....++++... +
T Consensus 76 ~~~l~~i~~~~~-~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~---------~~-~~~~~i~sl~~~--~ 139 (321)
T PF03178_consen 76 NFKLKLIHSTEV-KGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKA---------FY-DSPFYITSLSVF--K 139 (321)
T ss_dssp --EEEEEEEEEE-SS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEE---------EE--BSSSEEEEEEE--T
T ss_pred ceEEEEEEEEee-cCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhh---------ee-cceEEEEEEecc--c
Confidence 112221111233 6788888766 444 54444 4789999998877 22221 11 112355555544 5
Q ss_pred cEEEEEc-CCeEEEEeCCC-CeEEEEecc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 621 SVLAVAA-ETVITLWDPDR-NVLVAVIGE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 621 ~~la~~~-d~~i~iwd~~~-~~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.++++|+ ...+.++..+. +..+..+.. ....+.++.|-+|++.++.+..+|. +.++....
T Consensus 140 ~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn--l~~l~~~~ 203 (321)
T PF03178_consen 140 NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN--LFVLRYNP 203 (321)
T ss_dssp TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE--EEEEEE-S
T ss_pred cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe--EEEEEECC
Confidence 6999998 66677664432 332323322 2344889999977788888988887 99988763
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.014 Score=57.08 Aligned_cols=206 Identities=17% Similarity=0.072 Sum_probs=120.7
Q ss_pred eEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee
Q 040987 451 DIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 451 ~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~ 529 (762)
+..|.++...| .+--..+.|.-|+..+++.. .+.. ...+.++..-.++..|+++. .
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~-~~~~-----------p~~~~~~~~~d~~g~Lv~~~-----------~ 85 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKR-VFPS-----------PGGFSSGALIDAGGRLIACE-----------H 85 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceE-EEEC-----------CCCcccceeecCCCeEEEEc-----------c
Confidence 44567766644 44446678888888755322 1111 22234444434444444443 3
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-----C----CcEEEEEcc-cccccccccCCcee
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-----G----GDFKVWICN-DELQQKDLQSSGWS 599 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-----d----g~i~iwd~~-~~~~~~~~~~~~~~ 599 (762)
.+.+++.+++.....+.. ...+......+.+...|+|.+.++... . ..-.+|-+. .+.......
T Consensus 86 g~~~~~~~~~~~~t~~~~-~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~----- 159 (307)
T COG3386 86 GVRLLDPDTGGKITLLAE-PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD----- 159 (307)
T ss_pred ccEEEeccCCceeEEecc-ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-----
Confidence 567777765554322221 223332456678899999987775443 0 111344444 333333221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC--C----e-EEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR--N----V-LVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~--~----~-~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.+-..-+.++||||++.|..+. .+.|.-|++.. + + ....+....+.--.++...+|.+.+++..+
T Consensus 160 ------~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 160 ------DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred ------CcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 1233456899999999988885 68898887762 2 1 122222334556678888899888766555
Q ss_pred CCCeEEEEECCCCceeeEEEEee
Q 040987 671 SKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 671 ~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
| +.|.+|+-+ |+++..+..+.
T Consensus 234 g-~~v~~~~pd-G~l~~~i~lP~ 254 (307)
T COG3386 234 G-GRVVRFNPD-GKLLGEIKLPV 254 (307)
T ss_pred C-ceEEEECCC-CcEEEEEECCC
Confidence 4 239999988 99999988884
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.27 Score=54.93 Aligned_cols=223 Identities=12% Similarity=0.011 Sum_probs=123.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC---------eEEEEeC----------------CCCCeEEEEecCCcEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP---------LLYFTES----------------PDPSLSSISCADNQVH 419 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~---------v~~~~~s----------------~~~~~l~~~~~d~~i~ 419 (762)
+..++.++.++.|.-.|.++|+.+........ ...+++. ..+..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677777888999999999887533222111 1112221 1345788888999999
Q ss_pred EEEcCCceEEEEEccCCCC---CCCCCcccCceeeEEEeC--CCCEEEEeec----------CceEEEEEcCCCCceeeE
Q 040987 420 LLKMPSMEIIRSISGIKLP---CPLPEEYKGLCRDIAFNH--DGGLVALRAE----------NYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~s~--~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~ 484 (762)
-.|.++|+.+..+...... ....+...+. ..+.-.| .+..+++++. +|.|+-+|..+++.+..+
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~-~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGY-YYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcc-cccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999999998876431100 0000000000 0011111 1335555542 688999999999998877
Q ss_pred EeecccccC--CCC-----cceeE-EEEEEecCCCeEEEEeeec----------cccCCCceeEEEEEEecCCCceeEEE
Q 040987 485 QVCERNHQP--GDD-----VTVVV-TLVALSQDGSLMSTVDIKL----------AEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 485 ~~~~~~~~~--~~~-----~~~~v-~~~~~sp~g~~l~~~~~~~----------~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
......... ..+ ....+ ..++++++...+....... +.++ ...+.|.-.|.++++..+.++
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n-~y~~slvALD~~TGk~~W~~Q 431 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADE-KYSSSLVALDATTGKERWVFQ 431 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcc-cccceEEEEeCCCCceEEEec
Confidence 642111100 000 00111 3445666655555433111 0111 135678888999999888776
Q ss_pred EEeecCCC------CCceEEEEEcC-CCC---eEEEEeCCCcEEEEEccccccccc
Q 040987 547 TIVYEPHR------DAGISAVAFHP-NRR---AAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 547 ~~~~~~h~------~~~v~~~~~sp-d~~---~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
. ..|. .....-+.+.. +|+ .++.++.+|.+.+.|-++++.+..
T Consensus 432 ~---~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~ 484 (764)
T TIGR03074 432 T---VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP 484 (764)
T ss_pred c---cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence 4 2220 01111122322 553 788889999999999998876654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.035 Score=49.75 Aligned_cols=163 Identities=11% Similarity=0.090 Sum_probs=92.2
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYG 576 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~d 576 (762)
..+..+-..+|+|++++-.-.+..++-....+.++.|-....-.. +. .. -.--+.++|+.+.+.+.. -+.+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~--i~-----~~-v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL--IW-----NC-VGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCcee--ee-----hh-ccCCccccccccCcEEEEEccCc
Confidence 445667788999999544332222221123455666655432111 10 11 223357899988776554 4556
Q ss_pred CcEEEEE--cccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 577 GDFKVWI--CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 577 g~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
-+|.-|| ..++.....-. .+.............-.+++..+|.+.++.- .++|...|..+|+.+..+.-....|+
T Consensus 180 ~~V~a~dyd~~tG~~snr~~--i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qit 257 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKV--IFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQIT 257 (310)
T ss_pred eEEeeeecCCCcccccCcce--eEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceE
Confidence 6776787 55554332211 1111100001111223455666787766664 89999999999999999988888999
Q ss_pred EEEEeCC--CCEEEEEEcC
Q 040987 654 NMSFVGS--SEYLVATSWG 670 (762)
Q Consensus 654 ~~~~s~d--g~~l~s~~~d 670 (762)
+.+|-.- .-+.+++..+
T Consensus 258 sccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 258 SCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred EEEecCCCccEEEEEehhc
Confidence 9999764 2344444433
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.048 Score=51.02 Aligned_cols=178 Identities=9% Similarity=0.014 Sum_probs=114.1
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 469 (762)
..+....+.++.|+|+.+.|++......-.++-...|+.++++.-... .....+.+..+++++++--.++.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~---------~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF---------SDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc---------CChhHeEEecCCEEEEEehhcce
Confidence 344555699999999999999988887777777777999988643221 34467889999998888888899
Q ss_pred EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe
Q 040987 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV 549 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~ 549 (762)
+.++.+..+..........-..............++|+|..+.|..+- +..-+.||..............
T Consensus 152 l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK---------Er~P~~I~~~~~~~~~l~~~~~- 221 (316)
T COG3204 152 LYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK---------ERNPIGIFEVTQSPSSLSVHAS- 221 (316)
T ss_pred EEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE---------ccCCcEEEEEecCCcccccccc-
Confidence 999988776544333221111101111145578899999998888886 4556666666533311111100
Q ss_pred ecCCC------CCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccc
Q 040987 550 YEPHR------DAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 550 ~~~h~------~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~ 587 (762)
..+. -..|.++.|.+. +.+|+-+.+++.+.-.|....
T Consensus 222 -~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 222 -LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred -cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 0110 235677888874 556666666777766666543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=44.00 Aligned_cols=39 Identities=49% Similarity=0.805 Sum_probs=34.7
Q ss_pred ceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 104 GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 104 ~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
++++..+..|...|.++.|.+++ .++++++.|+.+++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-------KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-------CEEEEecCCCeEEEcC
Confidence 45677888899999999999998 6888999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.13 Score=48.36 Aligned_cols=188 Identities=13% Similarity=0.060 Sum_probs=115.5
Q ss_pred CceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|..++.++-+.+.-| .|+.+|+.+++.........+.+ -..++...|.-+..+-
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~F---------gEGit~~~d~l~qLTW-------- 107 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYF---------GEGITILGDKLYQLTW-------- 107 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------EEEEEEETTEEEEEES--------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccc---------ceeEEEECCEEEEEEe--------
Confidence 4567888888888777776555 79999999998776655543322 3344444443333333
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++...+||..+.+...++. +.+ .=..++ .|++.|+.+.....++++|..+.+....+. ....
T Consensus 108 --k~~~~f~yd~~tl~~~~~~~---y~~----EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~------V~~~ 170 (264)
T PF05096_consen 108 --KEGTGFVYDPNTLKKIGTFP---YPG----EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ------VTDN 170 (264)
T ss_dssp --SSSEEEEEETTTTEEEEEEE----SS----S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-------EET
T ss_pred --cCCeEEEEccccceEEEEEe---cCC----cceEEE--cCCCEEEEECCccceEEECCcccceEEEEE------EEEC
Confidence 77899999999887766653 222 334555 467778777667789999988766555442 1111
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc------------c---cCceeEEEEeCCCCEEEEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE------------T---LTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~------------~---~~~v~~~~~s~dg~~l~s~~ 668 (762)
...-..++.+.|- +|...|=.- ...|...|..+|+....+.- + .+-.+.+++.|....|...|
T Consensus 171 g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 171 GRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp TEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred CEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 1223456778885 676666554 77888999999998876521 0 12378999999776666655
Q ss_pred c
Q 040987 669 W 669 (762)
Q Consensus 669 ~ 669 (762)
.
T Consensus 250 K 250 (264)
T PF05096_consen 250 K 250 (264)
T ss_dssp T
T ss_pred C
Confidence 4
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.042 Score=51.44 Aligned_cols=182 Identities=13% Similarity=0.020 Sum_probs=110.5
Q ss_pred eeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
+.+-...+.++.|+|+.+.|++......-.++=...|+.+..... -.....+.+..+|++.++--.++.+.++.+...
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 345555699999999999999888877766765566776433222 234556778788888887777888888887765
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.....+...+.+.......+.....++|+|..+.|.++-+..-+.+|.....................+-.-..+..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 43333322222221111223577899999999999998888878888776433111111110000000001345777888
Q ss_pred ecCC-CeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 507 SQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 507 sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
++.. .+++.+. +++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~---------ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSD---------ESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEec---------CCceEEEEecCCC
Confidence 8754 4555554 5666666666544
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.099 Score=52.59 Aligned_cols=54 Identities=13% Similarity=0.288 Sum_probs=37.3
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee---eeeeccCcCeEEEEEcCC
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR---KITLHHTKKLTVLAFHPT 292 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~ 292 (762)
.++.|+|.|||+++++-..|.|++++....... .+. .+..........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~--~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKT--PVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECE--EEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcc--eecccccccccccCCcccceeccc
Confidence 467899999999999888999999993333211 111 223345667899999994
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.13 Score=51.53 Aligned_cols=239 Identities=13% Similarity=0.079 Sum_probs=106.4
Q ss_pred CCCEEEEEe-cCCeEEEEecCCCce----eccCCC-----C---CCeEEEEeCCCCCeEEEEec------CCcEEEEEcC
Q 040987 364 DGAYLYSGG-KEGVLVVWQLDTGKK----KFLPRI-----G---SPLLYFTESPDPSLSSISCA------DNQVHLLKMP 424 (762)
Q Consensus 364 ~g~~l~s~~-~dg~i~~wd~~~~~~----~~~~~~-----~---~~v~~~~~s~~~~~l~~~~~------d~~i~i~d~~ 424 (762)
+.++|+..+ ..+.|++.|+.+... ....+. . .....+-.-|+|+.++++-. .|.+.++|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 456777766 668899999885332 111110 0 11223334578888877532 2468899999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee--------------------cCceEEEEEcCCCCceeeE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--------------------ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~dg~i~i~d~~~~~~~~~~ 484 (762)
+.+............ ..-..+-|.|..+.+++.. ...++.+||+.+.+.+..+
T Consensus 166 tf~v~g~We~~~~~~-------~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQ-------PFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp T--EEEE--SB-TT-------------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred cccccceeccCCCCC-------CCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 888887776543221 3446788888888777753 1358999999999888887
Q ss_pred EeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEEEEEe-cCCCce----eEEEEEeecCCC---
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLKFWVS-GTQNKE----FTLSTIVYEPHR--- 554 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~iwd~-~~~~~~----~~~~~~~~~~h~--- 554 (762)
..... ...+..+.|.. +..+=.+++. -..+|..|-- +.++-. ..+......+-.
T Consensus 239 dLg~~--------g~~pLEvRflH~P~~~~gFvg~a--------Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ 302 (461)
T PF05694_consen 239 DLGEE--------GQMPLEVRFLHDPDANYGFVGCA--------LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPE 302 (461)
T ss_dssp ES-TT--------EEEEEEEEE-SSTT--EEEEEEE----------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---G
T ss_pred ecCCC--------CCceEEEEecCCCCccceEEEEe--------ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccc
Confidence 76533 23455666644 4444444332 3344544443 333211 111110000000
Q ss_pred --------CCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCcee---------eeeecccCCCCeEEEEE
Q 040987 555 --------DAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWS---------CHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 555 --------~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~ 616 (762)
..-|+.+..|.|.++|..++. .|.++.||+......+..- ..+. +......-.+...-+..
T Consensus 303 ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~g-qv~lGG~~~~~~~~~v~g~~l~GgPqMvql 381 (461)
T PF05694_consen 303 MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVG-QVFLGGSIRKGDHPVVKGKRLRGGPQMVQL 381 (461)
T ss_dssp GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEE-EEE-BTTTT-B--TTS------S----EEE
T ss_pred cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEe-EEEECcEeccCCCccccccccCCCCCeEEE
Confidence 234799999999999988775 7899999998755433221 0000 00000011234466788
Q ss_pred cCCCcEEEEE
Q 040987 617 SADGSVLAVA 626 (762)
Q Consensus 617 s~dg~~la~~ 626 (762)
|-||+.|.+.
T Consensus 382 S~DGkRlYvT 391 (461)
T PF05694_consen 382 SLDGKRLYVT 391 (461)
T ss_dssp -TTSSEEEEE
T ss_pred ccCCeEEEEE
Confidence 8888877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.014 Score=59.19 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=63.8
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce-eEEEEeCC-----------------
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI-MNMSFVGS----------------- 660 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v-~~~~~s~d----------------- 660 (762)
+...+......+.+++.+|++++.|+.+ -|+|.++|+.++..++..+|-++.- .-+....+
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcc
Confidence 3334445567789999999999888876 5999999999998888887765541 11111111
Q ss_pred CCEE-EEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 661 SEYL-VATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 661 g~~l-~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+| +-+-..|. |.||++.+|..+..+....
T Consensus 379 ~l~LvIyaprRg~--lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 379 ALFLVIYAPRRGI--LEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred eEEEEEEeccCCe--EEEEecCCCCEEEEEEeCC
Confidence 1122 33444555 9999999999998887654
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.25 Score=48.20 Aligned_cols=283 Identities=14% Similarity=0.098 Sum_probs=126.1
Q ss_pred ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheee-eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR-KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.-...+..|.|..+.+-.+++..+.| +...++....+... .......-...++.|..+ ..+++| ..+ +.+...+
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESS
T ss_pred CCCCceEEEEEecCCEEEEEecCCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecC
Confidence 34557889999977777788877753 44433332111110 000011224567777654 344444 445 4444455
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-e-c
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-K-F 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-~-~ 389 (762)
.++..... ..-..-......+....++..++ ++..|.|+.=. +.|+. . .
T Consensus 89 gG~tW~~v---------------------------~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T~-DgG~tW~~~ 139 (302)
T PF14870_consen 89 GGKTWERV---------------------------PLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRTT-DGGKTWQAV 139 (302)
T ss_dssp TTSS-EE-------------------------------TT-SS-EEEEEEEETTEEEE-EETT--EEEES-STTSSEEEE
T ss_pred CCCCcEEe---------------------------ecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEeC-CCCCCeeEc
Confidence 55443311 00001112223343334443333 34445543322 22322 2 2
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.......+..+..++||++++++.......-||.-. .++..... . ..+..+.|.|++.+.+.+ +.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~--~----------~riq~~gf~~~~~lw~~~-~G 206 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS--S----------RRIQSMGFSPDGNLWMLA-RG 206 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S--S----------S-EEEEEE-TTS-EEEEE-TT
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc--c----------ceehhceecCCCCEEEEe-CC
Confidence 334446788888999999999886555566776543 22222221 1 689999999998766654 88
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
|.|++=+.... ......... +.......+..+++.+++...|+++ .+.+ +...+.++. .+...
T Consensus 207 g~~~~s~~~~~--~~~w~~~~~---~~~~~~~~~ld~a~~~~~~~wa~gg----------~G~l-~~S~DgGkt-W~~~~ 269 (302)
T PF14870_consen 207 GQIQFSDDPDD--GETWSEPII---PIKTNGYGILDLAYRPPNEIWAVGG----------SGTL-LVSTDGGKT-WQKDR 269 (302)
T ss_dssp TEEEEEE-TTE--EEEE---B----TTSS--S-EEEEEESSSS-EEEEES----------TT-E-EEESSTTSS--EE-G
T ss_pred cEEEEccCCCC--ccccccccC---CcccCceeeEEEEecCCCCEEEEeC----------CccE-EEeCCCCcc-ceECc
Confidence 88888772221 112211111 1111144589999999998888875 3322 333343432 22211
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
. ...- ...+..+.|.++.+-++.| .+|.+.-|
T Consensus 270 ~-~~~~-~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 270 V-GENV-PSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp G-GTTS-SS---EEEEEETTEEEEE--STTEEEEE
T ss_pred c-ccCC-CCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 0 0122 4567888887766666655 57766544
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=65.46 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=71.3
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeE-EEEEcCCCcEEEEEc-CCeEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMT-AAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~dg~~la~~~-d~~i~ 632 (762)
...+.-+.|+|.-.++|++..+|.+.+..++ .+.+..+ +.++..++ +++|.|||++||+|- ||+|+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwti-----------p~p~~~v~~sL~W~~DGkllaVg~kdG~I~ 87 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTI-----------PIPGENVTASLCWRPDGKLLAVGFKDGTIR 87 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEec-----------cCCCCccceeeeecCCCCEEEEEecCCeEE
Confidence 4467889999999999999999999888876 3332222 23566666 999999999999997 99999
Q ss_pred EEeCCCCeEEEEe-ccccCceeEEEEeC
Q 040987 633 LWDPDRNVLVAVI-GETLTPIMNMSFVG 659 (762)
Q Consensus 633 iwd~~~~~~~~~l-~~~~~~v~~~~~s~ 659 (762)
+.|+.++..+... ......|.++-|++
T Consensus 88 L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 88 LHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EEEccCCCceeccccccccchheeeccc
Confidence 9999998776552 22345577777763
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.2 Score=48.10 Aligned_cols=190 Identities=14% Similarity=0.055 Sum_probs=104.0
Q ss_pred ceeeEEEeCCCCEEEEee---cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 448 LCRDIAFNHDGGLVALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.+.+.+++++++.++... ....++++.. +........ ...+....|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-----------g~~l~~PS~d~~g~~W~v~~------- 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-----------GGSLTRPSWDPDGWVWTVDD------- 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-----------CCccccccccCCCCEEEEEc-------
Confidence 578899999999887766 2334555543 333322221 33577889999987777665
Q ss_pred CCceeEEEEEE-ecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEccccccc--ccccCCc
Q 040987 525 IGSLVCLKFWV-SGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQQ--KDLQSSG 597 (762)
Q Consensus 525 ~~~d~~i~iwd-~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~~--~~~~~~~ 597 (762)
.+...+++. ...+.. ...+.. ..- ...|+++.+||||..+|... .++.|.+--+.....- ..+
T Consensus 85 --~~~~~~~~~~~~~g~~~~~~v~~---~~~-~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l---- 154 (253)
T PF10647_consen 85 --GSGGVRVVRDSASGTGEPVEVDW---PGL-RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL---- 154 (253)
T ss_pred --CCCceEEEEecCCCcceeEEecc---ccc-CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee----
Confidence 445555553 223322 112211 111 22899999999999988766 2466776654322111 111
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEE-EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITL-WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~i-wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
-............++.++|.+++.+++.+. ++.+.. .....+. ...+..-...+.-++...+...++...
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~-~~~l~~~~~~~~v~a~~~~~~~~~~t~ 227 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGP-STPLPSVNLGVPVVAVAASPSTVYVTD 227 (253)
T ss_pred ccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCc-ccccCCCCCCcceEEeeCCCcEEEEEC
Confidence 001122223356889999999999888775 554444 4444332 222222222333344444444444443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.48 Score=52.96 Aligned_cols=68 Identities=10% Similarity=0.078 Sum_probs=48.1
Q ss_pred CceeecCCCEEEEEeC------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC-----CeEE
Q 040987 78 PPAFSNDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD-----GTIK 146 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d-----~~i~ 146 (762)
.+.+||||++||.+.| ..|+|.|+.+|+.+...-.... ..++|++|++ .++++...+ ..|.
T Consensus 131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~------~~~y~~~~~~~~~~~~v~ 202 (686)
T PRK10115 131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSW------TFYYVRKHPVTLLPYQVW 202 (686)
T ss_pred EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCC------EEEEEEecCCCCCCCEEE
Confidence 4889999999999974 3899999998875433222222 4599999995 444554332 4678
Q ss_pred EEeCCCc
Q 040987 147 YWDFSVP 153 (762)
Q Consensus 147 vWd~~~~ 153 (762)
.+++.++
T Consensus 203 ~h~lgt~ 209 (686)
T PRK10115 203 RHTIGTP 209 (686)
T ss_pred EEECCCC
Confidence 8888887
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.069 Score=58.71 Aligned_cols=144 Identities=6% Similarity=0.015 Sum_probs=98.5
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEecc--ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
|........|.--|+..|+.+...+.+. ++..++-..-+.. ..... . ..|-.+
T Consensus 497 l~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aq---lt~e~----t------------------flGls~ 551 (794)
T PF08553_consen 497 LLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQ---LTNEQ----T------------------FLGLSD 551 (794)
T ss_pred eecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccc---cCCCc----e------------------EEEECC
Confidence 3444556889999999999999998887 3444421000000 00000 1 446688
Q ss_pred ccEEEEecCCcc--ccc--eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 214 GRICKCNLTESR--LAG--GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 214 ~~i~iwd~~~~~--~~~--~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
+.+..||.+-.. ++. ...........|++-+.+|.+++++.+|.|++||--... .+..+.+-..+|..|..
T Consensus 552 n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~-----AKT~lp~lG~pI~~iDv 626 (794)
T PF08553_consen 552 NSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKR-----AKTALPGLGDPIIGIDV 626 (794)
T ss_pred CceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeecccchh-----hhhcCCCCCCCeeEEEe
Confidence 899999998643 221 112234557899999999988888999999999954433 33666677899999999
Q ss_pred cCCCcEEEEeecCCeEEEEec
Q 040987 290 HPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~ 310 (762)
+.||++|++.+ +..+.+++.
T Consensus 627 t~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 627 TADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cCCCcEEEEee-cceEEEEEE
Confidence 99999988665 456778775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.24 Score=50.48 Aligned_cols=87 Identities=8% Similarity=-0.023 Sum_probs=55.3
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCC-eEEEEeC-C---------------C-CC-
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSP-LLYFTES-P---------------D-PS- 407 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~-v~~~~~s-~---------------~-~~- 407 (762)
.+......+.+++.+|++++.++...-|.|.++|+.++.....- +..+. +.-+... . . ..
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence 34445567889999999988888777799999999988764322 22211 1111100 0 0 11
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+++.+...|.|.||.+++|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 233455688999999998877766543
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0017 Score=40.81 Aligned_cols=39 Identities=18% Similarity=0.468 Sum_probs=34.3
Q ss_pred CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 639 NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++++..+..|...|.++.|.+++.++++++.|+. +++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~--~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT--IKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCe--EEEcC
Confidence 4566677788899999999999999999999998 99996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.28 Score=47.14 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=88.8
Q ss_pred CCceEEEECCCCCEEEEEe--C--CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe-c
Q 040987 236 KEPQVITISSSGKYFGIRK--Q--RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR-G 310 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~--~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~-~ 310 (762)
..+...++++||+.+|+-. + ..+.++....... ... ....+....|++++...+....+...+++. .
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~------~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~ 95 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR------PVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDS 95 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce------eec--cCCccccccccCCCCEEEEEcCCCceEEEEec
Confidence 3788999999999987543 4 4455554433221 222 233788899999988777766666666664 2
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe---cCCeEEEEecC---C
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG---KEGVLVVWQLD---T 384 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~dg~i~~wd~~---~ 384 (762)
..+.... .. .....-...|..+.+||||.+++... .++.|.+--+. .
T Consensus 96 ~~g~~~~--------------------------~~-v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~ 148 (253)
T PF10647_consen 96 ASGTGEP--------------------------VE-VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD 148 (253)
T ss_pred CCCccee--------------------------EE-ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC
Confidence 2221110 00 01111111799999999999988765 34677766443 2
Q ss_pred Cce------ec-cCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 385 GKK------KF-LPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 385 ~~~------~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+.. .. .......+..+.|.+++.+++.+...+
T Consensus 149 g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 149 GVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred CCcceeccceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 211 11 123346789999999998887765544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=1.3 Score=49.63 Aligned_cols=111 Identities=8% Similarity=-0.065 Sum_probs=68.2
Q ss_pred ceeEEEEecCCCEEEEEec-----CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGK-----EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
.+..+.|+|||++|+.+.. ...|++.|+.+++..... ....-..++|++|++.|+....+ ..++.+++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~-i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l 206 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL-LDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI 206 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc-ccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence 4667889999998886532 246889999888632211 11111569999999887776542 35777888
Q ss_pred CCc--eEEEEEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec---CceEEEEEcC
Q 040987 424 PSM--EIIRSISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE---NYCIHFYSLL 476 (762)
Q Consensus 424 ~~~--~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~---dg~i~i~d~~ 476 (762)
.++ +....+.... .... ....+.|+++++..+. ++.+.+++..
T Consensus 207 gt~~~~d~lv~~e~~----------~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 207 GTPASQDELVYEEKD----------DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred CCChhHCeEEEeeCC----------CCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 876 3333444322 1122 3344558887765543 3578888853
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0058 Score=62.67 Aligned_cols=79 Identities=6% Similarity=0.032 Sum_probs=70.1
Q ss_pred CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 608 KKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
...+..+.|+|.-.++|.+. +|.|.+..++ .+.+.++.-|..+++ +++|.|||+.||.|-.||+ |++-|++++..
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~--I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT--IRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe--EEEEEccCCCc
Confidence 45678899999999999998 9999999998 777778876777777 9999999999999999998 99999999988
Q ss_pred eeEE
Q 040987 686 SWSY 689 (762)
Q Consensus 686 ~~~~ 689 (762)
+.++
T Consensus 97 l~~~ 100 (665)
T KOG4640|consen 97 LVSF 100 (665)
T ss_pred eecc
Confidence 7763
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.53 Score=44.32 Aligned_cols=197 Identities=12% Similarity=-0.003 Sum_probs=117.1
Q ss_pred CcCeEEEEEcCCCcEEEEeecCC--eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTG--RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
..-...+.|..+|.++-+.+.-| .|+.+|+.+++..... .+.. .---..
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~----------------------------~l~~-~~FgEG 94 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV----------------------------PLPP-RYFGEG 94 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE----------------------------E-TT-T--EEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE----------------------------ECCc-ccccee
Confidence 33456788877888777776655 7999999888654311 1111 001122
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC-
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
++.. +++...-.-.++...+||..+.+..........=..++ .|++.|+.+.....++.+|..+.+..+.+.....
T Consensus 95 it~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 95 ITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred EEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECC
Confidence 3333 22333344567899999999887754444444455555 6788888888888999999998877776644321
Q ss_pred -CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc-----CCCCcceeEEEEEEecCCC
Q 040987 438 -PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ-----PGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 438 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~sp~g~ 511 (762)
++ ..+..+.+- +|...|-.-....|...|..+|+....+....-... .......-.+.+|+.|+.+
T Consensus 172 ~pv-------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 172 RPV-------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp EE----------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred EEC-------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 11 355667775 677777777788899999999988776654321110 0001145689999999877
Q ss_pred eEEEEe
Q 040987 512 LMSTVD 517 (762)
Q Consensus 512 ~l~~~~ 517 (762)
.|...+
T Consensus 244 ~l~vTG 249 (264)
T PF05096_consen 244 RLFVTG 249 (264)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 665554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.16 Score=40.33 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=27.1
Q ss_pred eeEEEE---eCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceE
Q 040987 117 VTTVIV---VPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIF 166 (762)
Q Consensus 117 V~~v~~---s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~ 166 (762)
|+++++ ..||+ ..|+.||.|..||||+= .+.+..+.....+.
T Consensus 2 V~al~~~d~d~dg~------~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~ 46 (111)
T PF14783_consen 2 VTALCLFDFDGDGE------NELLVGSDDFEIRVFKG--DEIVAEITETDKVT 46 (111)
T ss_pred eeEEEEEecCCCCc------ceEEEecCCcEEEEEeC--CcEEEEEecccceE
Confidence 455544 45665 57779999999999983 35555555443333
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.038 Score=55.75 Aligned_cols=146 Identities=16% Similarity=0.105 Sum_probs=95.1
Q ss_pred CCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe--E-----EEEeeeccccCCCc
Q 040987 456 HDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL--M-----STVDIKLAEEGIGS 527 (762)
Q Consensus 456 ~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~--l-----~~~~~~~~~~~~~~ 527 (762)
.+.++|+ .+.....++-.|++.|+.+.+.... ..|.-+.+.|+.+. | +.|- .
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~-----------~di~mv~~t~d~K~~Ql~~e~TlvGL---------s 402 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFE-----------DDINMVDITPDFKFAQLTSEQTLVGL---------S 402 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeecc-----------CCcceeeccCCcchhcccccccEEee---------c
Confidence 3444433 3444567888999999988887663 33667777776542 1 1222 5
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCC---CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHR---DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~---~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
+..|.-||++-...- .+.- .++|. .....|.+-..+| ++|+||.+|.|++||-- +...... +
T Consensus 403 ~n~vfriDpRv~~~~-kl~~--~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~AKTA----------l 467 (644)
T KOG2395|consen 403 DNSVFRIDPRVQGKN-KLAV--VQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRRAKTA----------L 467 (644)
T ss_pred CCceEEecccccCcc-eeee--eeccccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhhhhhc----------c
Confidence 678888998744331 1110 11220 3355666666555 78999999999999983 3333222 3
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
++-..+|..+..+.||++|+...+..+.+.++
T Consensus 468 PgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t 499 (644)
T KOG2395|consen 468 PGLGDAIKHVDVTADGKWILATCKTYLLLIDT 499 (644)
T ss_pred cccCCceeeEEeeccCcEEEEecccEEEEEEE
Confidence 45688999999999999998888888887775
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.17 Score=40.12 Aligned_cols=100 Identities=15% Similarity=0.113 Sum_probs=67.0
Q ss_pred eeEEEEec---CC-CEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 356 VSVLIFSS---DG-AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 356 v~~~~~s~---~g-~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
|+++++.. || +.|+.|+.|..|++|+-+ +........+.+.+++-... ..++.+..+|+|-+|+-. ..+..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR 76 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR 76 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence 55666643 33 679999999999999854 44555566677888887666 568888899999999864 23333
Q ss_pred EccCCCCCCCCCcccCceeeEEEeC-C--C-CEEEEeecCceEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNH-D--G-GLVALRAENYCIH 471 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~-~--~-~~l~~~~~dg~i~ 471 (762)
.+.. ..+.++++.. + | .-|++|-.+|.|-
T Consensus 77 iKSK-----------~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 77 IKSK-----------NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eccC-----------CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 3332 2345554433 2 2 2588888888764
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.54 E-value=1.1 Score=45.35 Aligned_cols=201 Identities=13% Similarity=0.058 Sum_probs=92.5
Q ss_pred EEEEecCCCEEEEEe--c----CCeEEEEecCCCceeccCCC----CCCeEEEEeCCCCCeEEEEe--------------
Q 040987 358 VLIFSSDGAYLYSGG--K----EGVLVVWQLDTGKKKFLPRI----GSPLLYFTESPDPSLSSISC-------------- 413 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~--~----dg~i~~wd~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~-------------- 413 (762)
.+..-|+|+.++++= . -|.+.+.|-++.+....-.. ..--..+-|.|..+.++++.
T Consensus 134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 344457888887742 2 25688888887665422111 22345566778777777653
Q ss_pred ------cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEe-ecCceEEEEEc-CCCCceee
Q 040987 414 ------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALR-AENYCIHFYSL-LDDRGISE 483 (762)
Q Consensus 414 ------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~-~~dg~i~i~d~-~~~~~~~~ 483 (762)
....+.+||..+.+.++++.-.... .....+.|..+ ..+=+++ .-..+|..|-- ..++-..+
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g--------~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~ 285 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG--------QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAE 285 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEEES-TTE--------EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEE
T ss_pred HhhcccccCeEEEEECCCCcEeeEEecCCCC--------CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeee
Confidence 2357999999999999998754310 23456666554 3332222 23444554433 33321111
Q ss_pred E--Eeecccc---------cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 484 V--QVCERNH---------QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 484 ~--~~~~~~~---------~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
. ....... .+......-++.+.+|.|.++|..++. ..|.|+.||+..............-+
T Consensus 286 kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W--------~~GdvrqYDISDP~~Pkl~gqv~lGG 357 (461)
T PF05694_consen 286 KVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNW--------LHGDVRQYDISDPFNPKLVGQVFLGG 357 (461)
T ss_dssp EEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEET--------TTTEEEEEE-SSTTS-EEEEEEE-BT
T ss_pred EEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcc--------cCCcEEEEecCCCCCCcEEeEEEECc
Confidence 1 1111100 000011245899999999999999886 78999999999876655443321111
Q ss_pred C------C-------CCceEEEEEcCCCCeEEEEe
Q 040987 553 H------R-------DAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 553 h------~-------~~~v~~~~~spd~~~l~~~~ 574 (762)
- . .+...-+..|-||++|...+
T Consensus 358 ~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 358 SIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp TTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred EeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 0 0 12335677888888877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.14 Score=55.57 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=117.1
Q ss_pred eEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecC------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCAD------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGL 448 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (762)
.+..||..+++...+...+.+... ....-++..+++|+.+ ..+..||..+..-. .+..... ..
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~---------~R 342 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIK---------NR 342 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcc---------hh
Confidence 577889888877655444332211 1122366677777643 34778887765421 1111110 11
Q ss_pred eeeEEEeCCCCEEEEeecCc-----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 449 CRDIAFNHDGGLVALRAENY-----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 449 v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
....+..-+++..+.|+.++ .+..||..+++-.. +..... + ..... +..-+|+..+.|+.+....
T Consensus 343 ~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~-~~~mp~---~----r~~~~--~~~~~g~IYviGG~~~~~~ 412 (557)
T PHA02713 343 CRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM-LPDMPI---A----LSSYG--MCVLDQYIYIIGGRTEHID 412 (557)
T ss_pred hceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE-CCCCCc---c----ccccc--EEEECCEEEEEeCCCcccc
Confidence 11122234677778887653 47889987653111 000000 0 11111 1223677777776321000
Q ss_pred --------------CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC------cEEEEE
Q 040987 524 --------------GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG------DFKVWI 583 (762)
Q Consensus 524 --------------~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg------~i~iwd 583 (762)
....-..+..||..+.+-... .. ...+. ... +++ .-++++.+.|+.++ .+..||
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~-m~~~r--~~~-~~~-~~~~~IYv~GG~~~~~~~~~~ve~Yd 486 (557)
T PHA02713 413 YTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PN-FWTGT--IRP-GVV-SHKDDIYVVCDIKDEKNVKTCIFRYN 486 (557)
T ss_pred cccccccccccccccccccceEEEECCCCCeEeec-CC-CCccc--ccC-cEE-EECCEEEEEeCCCCCCccceeEEEec
Confidence 000124678888877643211 10 00111 111 122 23567777777542 356677
Q ss_pred ccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC--eEEEEeCCCCeEEEEeccccC
Q 040987 584 CND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET--VITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 584 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~--~i~iwd~~~~~~~~~l~~~~~ 650 (762)
..+ . .|................++ +|++.++|+ ++ .+..||..+.+-......|..
T Consensus 487 p~~~~---------~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 487 TNTYN---------GWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHSN 546 (557)
T ss_pred CCCCC---------CeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccccchhhhcCC
Confidence 765 2 34333333322333333333 788888887 76 788899988876655554543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=51.62 Aligned_cols=105 Identities=21% Similarity=0.240 Sum_probs=71.3
Q ss_pred CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 567 RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 567 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
+.-+++|+.+|.|++|+........... . .....|.+ +.--.++.+..++. ||.|+.|++.-++.+..
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~---------~-s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~ 139 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV---------C-SGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGY 139 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh---------h-cccccceeccccccccceeEEeccCCceeeeccccCceeee
Confidence 4568889999999999886221111110 0 01122222 22223444666666 99999999999999988
Q ss_pred ecccc-CceeEEEEeCCCCEEEEE--EcCCCCeEEEEECCCC
Q 040987 645 IGETL-TPIMNMSFVGSSEYLVAT--SWGSKPQLSVWNMSKL 683 (762)
Q Consensus 645 l~~~~-~~v~~~~~s~dg~~l~s~--~~d~~~~v~vwd~~~~ 683 (762)
..+|. .++..+..+..+++|+++ |.|.. ++.|+++.-
T Consensus 140 ~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~--~k~W~ve~~ 179 (238)
T KOG2444|consen 140 VGQHNFESGEELIVVGSDEFLKIADTSHDRV--LKKWNVEKI 179 (238)
T ss_pred eccccCCCcceeEEecCCceEEeeccccchh--hhhcchhhh
Confidence 88888 667777777778888888 78877 888888753
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.72 Score=50.12 Aligned_cols=237 Identities=10% Similarity=0.073 Sum_probs=123.7
Q ss_pred CCCCeEEEEecCC------cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEE
Q 040987 404 PDPSLSSISCADN------QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIH 471 (762)
Q Consensus 404 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~ 471 (762)
..+..+++|+..+ .+..||..++.-.....-.. ...-.++++. ++...++|+.+ ..+.
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~---------~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS---------PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc---------ccccccEEEE-CCEEEEEccccCCCcccceEE
Confidence 3455667776653 57788887763332211111 0122334444 45777888887 3677
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
.||..+++=.. ..... ......-.-.-+|...|+|+.+ +...-.++..||..+.+-...-... .
T Consensus 353 ~YD~~~~~W~~--~a~M~--------~~R~~~~v~~l~g~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~--~ 416 (571)
T KOG4441|consen 353 RYDPRTNQWTP--VAPMN--------TKRSDFGVAVLDGKLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPML--T 416 (571)
T ss_pred EecCCCCceec--cCCcc--------CccccceeEEECCEEEEEeccc----cccccccEEEecCCCCcccccCCCC--c
Confidence 88887765211 11111 1111111223367778888743 3224457888998876543221100 0
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCC------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGG------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
. ......+ .-+|++.++|+.++ ++..||..+..-.... .......... .-.-++++.++
T Consensus 417 -~-r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~---------~M~~~R~~~g--~a~~~~~iYvv 481 (571)
T KOG4441|consen 417 -R-RSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA---------PMNTRRSGFG--VAVLNGKIYVV 481 (571)
T ss_pred -c-eeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecC---------Ccccccccce--EEEECCEEEEE
Confidence 0 1111222 22688888888654 4677887765433222 2222222222 22237778888
Q ss_pred Ec-CC-----eEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCC
Q 040987 626 AA-ET-----VITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKL 683 (762)
Q Consensus 626 ~~-d~-----~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~ 683 (762)
|+ |+ +|..||..+.+.... +......+....+ +++..+.++.|+. .+|..||-.+.
T Consensus 482 GG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 482 GGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred CCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 87 54 478899888754433 3323333322222 6678888888874 24666665554
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.13 E-value=1.3 Score=42.21 Aligned_cols=234 Identities=12% Similarity=0.092 Sum_probs=123.5
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCC------c-eEEEEEccCCCCCCCCCcccCceeeEEEeCCCC----------
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPS------M-EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG---------- 459 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~------~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------- 459 (762)
-..++++|.+.+-++....+...+||... . .+.-.+..... .......+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~-----~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP-----LAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC-----CCCCCCccEEEEeCCCceEEcCCCccc
Confidence 46789999988877777788899999861 1 12222221110 00113455666654322
Q ss_pred --EEEEeecCceEEEEEcCCCCc---eeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEE
Q 040987 460 --LVALRAENYCIHFYSLLDDRG---ISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 460 --~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
.++.+++||+|.-|...-+.. ...+... ... ....-..+++.. .+.+|..+.. ..++|.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d-~s~-----~gavYkGLAi~~~~~~~~LYaadF--------~~g~ID 165 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVD-ASQ-----QGNVYKGLAVGPTGGGDYLYAANF--------RQGRID 165 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEc-cCC-----CcceeeeeEEeecCCCceEEEecc--------CCCceE
Confidence 367788999999998654433 1111111 100 022334555554 3677777765 678999
Q ss_pred EEEecCCCceeE--EEEEeec-CCCCCceEE---------EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceee
Q 040987 533 FWVSGTQNKEFT--LSTIVYE-PHRDAGISA---------VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSC 600 (762)
Q Consensus 533 iwd~~~~~~~~~--~~~~~~~-~h~~~~v~~---------~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 600 (762)
+||-.-...... +...... +-..-.|.. ..-.++++.=+.+..-|.|-+||....-..+..
T Consensus 166 VFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~a------- 238 (336)
T TIGR03118 166 VFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVA------- 238 (336)
T ss_pred EecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEec-------
Confidence 998653322100 0000000 000001111 111112211222223367888888654333221
Q ss_pred eeecccCCCCeEEEEEcC------CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc------eeEEEEeC
Q 040987 601 HAVGSYKKKAMTAAAFSA------DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP------IMNMSFVG 659 (762)
Q Consensus 601 ~~~~~~~~~~i~~~~~s~------dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~------v~~~~~s~ 659 (762)
..+.-...+.|+..| .|.+|+--. ||+|..+|..+|+.+..+....+. .+.+.|-.
T Consensus 239 ---s~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 239 ---SSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred ---cCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 112234456677655 344554433 999999999999988888654433 67788866
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.24 Score=50.30 Aligned_cols=147 Identities=7% Similarity=-0.002 Sum_probs=99.6
Q ss_pred eEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
+|.++.....+.--|++.|+.+.+.+.+..+.-+.+ .++....++.+--. ..|-+++
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~--------t~d~K~~Ql~~e~T---------------lvGLs~n 404 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDI--------TPDFKFAQLTSEQT---------------LVGLSDN 404 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeec--------cCCcchhccccccc---------------EEeecCC
Confidence 455666677888899999999998887765333333 11222111110000 5577899
Q ss_pred cEEEEecCCccc-c----ceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 215 RICKCNLTESRL-A----GGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 215 ~i~iwd~~~~~~-~----~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
.|.-||.+-... . +.....-.....|.+-..+|..++++.+|.|++||--.... +..+.+-..+|..+..
T Consensus 405 ~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~A-----KTAlPgLG~~I~hVdv 479 (644)
T KOG2395|consen 405 SVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRA-----KTALPGLGDAIKHVDV 479 (644)
T ss_pred ceEEecccccCcceeeeeeccccccccccceeeecCCceEEEeecCCcEEeehhhhhhh-----hhcccccCCceeeEEe
Confidence 999999874332 1 11112234467888888999888889999999999844333 3677788899999999
Q ss_pred cCCCcEEEEeecCCeEEEEec
Q 040987 290 HPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~ 310 (762)
+.||++++..+ +..+.+.+.
T Consensus 480 tadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 480 TADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eccCcEEEEec-ccEEEEEEE
Confidence 99999887654 556777765
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.017 Score=37.88 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=31.5
Q ss_pred cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 649 LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 649 ~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
...|..++|+|...+||.++.||. |.++.+ +++.+|
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~--v~v~Rl-~~qriw 46 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGE--VLVYRL-NWQRIW 46 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCe--EEEEEC-CCcCcc
Confidence 346999999999999999999998 999999 676655
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.32 Score=52.92 Aligned_cols=92 Identities=8% Similarity=0.004 Sum_probs=50.5
Q ss_pred eEEEEecCCCceeccCCCCCC-eEEEEeCCCCCeEEEEecC------CcEEEEEcCC-ceE--EEEEccCCCCCCCCCcc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSP-LLYFTESPDPSLSSISCAD------NQVHLLKMPS-MEI--IRSISGIKLPCPLPEEY 445 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~-v~~~~~s~~~~~l~~~~~d------~~i~i~d~~~-~~~--~~~~~~~~~~~~~~~~~ 445 (762)
.+..||..+.+.........+ ....+..-+++..+.|+.+ ..+..||..+ .+- +..+....
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--------- 503 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--------- 503 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc---------
Confidence 578899888877554443221 1111223356666777653 2367788876 332 22222111
Q ss_pred cCceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCC
Q 040987 446 KGLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDR 479 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~ 479 (762)
.. .+++ .-+++..++|+.++ .+..||..+++
T Consensus 504 -~~-~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 -SA-LHTI-LHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred -cc-ceeE-EECCEEEEEeeecceeehhhcCccccc
Confidence 11 1222 22678888998887 67777777653
|
|
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=1.3 Score=41.77 Aligned_cols=278 Identities=9% Similarity=0.022 Sum_probs=148.3
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc---eEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-GSPLLYFTESPDPSLSSISCADNQVHLLKMPSM---EII 429 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~---~~~ 429 (762)
+-+..+.++ +++.+.+..+.-+++.|+.+...-.+... +..=..-.+.-.|++..++..+..+.++|+.+. .+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 345566775 45777777778899999988665332221 111222334456788888887777888888763 223
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
....... +....+++| |++-..+..|+-+.+.|+........+..... ...+..+..+++
T Consensus 165 grya~~~----------~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~--------g~g~~sv~vsdn 224 (370)
T COG5276 165 GRYALPG----------GDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT--------GPGTYSVSVSDN 224 (370)
T ss_pred eeeccCC----------CCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec--------CCceEEEEecCC
Confidence 3333222 233566666 55666677888899999987765443332211 335777777777
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
--+++... .-+.+-|..+.+.+..+... +......++.+..+ +++......+.-+.+-|+.+...
T Consensus 225 r~y~vvy~-----------egvlivd~s~~ssp~~~gsy--et~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~s 289 (370)
T COG5276 225 RAYLVVYD-----------EGVLIVDVSGPSSPTVFGSY--ETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPS 289 (370)
T ss_pred eeEEEEcc-----------cceEEEecCCCCCceEeecc--ccCCcccccceecc--cceeeeeccccCceeEeccCCCC
Confidence 77776654 35777777777665555432 11112233333443 55666666666677777765433
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
..... . .......-..+.. .|.++..+...+..+-+....+......+....+.+.+.+-+.+.+.+...
T Consensus 290 pfl~s------s--~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~ 359 (370)
T COG5276 290 PFLSS------S--LDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDY 359 (370)
T ss_pred Cchhc------c--ccCCCccccceEE--ecCeeEeccCCceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeec
Confidence 22210 0 0000001111221 223333333113333333332222222222222444444556667888877
Q ss_pred CCCCeEEEEEC
Q 040987 670 GSKPQLSVWNM 680 (762)
Q Consensus 670 d~~~~v~vwd~ 680 (762)
++. +.+|+.
T Consensus 360 ~~g--l~i~~~ 368 (370)
T COG5276 360 NGG--LSIIEY 368 (370)
T ss_pred CCC--EEEEEe
Confidence 776 888875
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.3 Score=44.38 Aligned_cols=153 Identities=10% Similarity=0.130 Sum_probs=88.6
Q ss_pred eeeccCCCceEEEECCCC-----CEEEEEeCCeEEEEEccCchhhhhe-eeeeeeccC----cCeEEEEEcCCCcEEEEe
Q 040987 230 VTLAEMKEPQVITISSSG-----KYFGIRKQRKLLIWKVPDVEAERVV-MRKITLHHT----KKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg-----~~la~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~----~~v~~~~~sp~~~~l~~~ 299 (762)
...+.-..|..+.|.|-+ .+||+-....|.||.+......... ......... ---..+.|+|....|++-
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 345566788999999864 5788889999999998632221001 111111111 123468899999888876
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEE
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLV 378 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~ 378 (762)
.....-.++++...... ....+ ...+.|.|.+|.+||++|+.+-. .=.-+
T Consensus 131 T~~dvSV~~sV~~d~sr----------------------------VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSy 181 (671)
T PF15390_consen 131 TARDVSVLPSVHCDSSR----------------------------VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSY 181 (671)
T ss_pred ecCceeEeeeeeeCCce----------------------------EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEE
Confidence 55544445555332111 01122 34567999999999998876543 34568
Q ss_pred EEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 379 VWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 379 ~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
+||-...... .....++.|.++.-.-| ..+|++
T Consensus 182 iWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~d-sqVAva 219 (671)
T PF15390_consen 182 IWDSAQKTLHRCSFCPVFDVGGYICSIEATVD-SQVAVA 219 (671)
T ss_pred EecCchhhhhhCCcceeecCCCceEEEEEecc-ceEEEE
Confidence 8986544321 23344556666654443 334444
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.035 Score=60.96 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=78.4
Q ss_pred CCCEEEEEecCCeEEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
.+..++.|+..|.+...|..+.-. ..-.....+|++++|+.+|+.++.|-.+|.|.+||+..++.++.+..+..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~-- 175 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPV-- 175 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCcc--
Confidence 445688888889999888776432 2233445799999999999999999999999999999999999988776544
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
..+.-+.+..++..++++...|. +|.+
T Consensus 176 -----t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 -----TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -----ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 45555666666677777777775 4544
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.1 Score=40.54 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=84.1
Q ss_pred cccccCCceeecCCCEEEEEe-C---------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-S---------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~---------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
+++... -..+|+|++.+-.- + |.++.|-+ +..+..+...-+--+.++|+.+.+ ++-++-+.
T Consensus 108 knR~ND-gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~K------~fY~iDsl 178 (310)
T KOG4499|consen 108 KNRLND-GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDAK------KFYYIDSL 178 (310)
T ss_pred hccccc-CccCCCCceeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccCc------EEEEEccC
Confidence 455554 77899999944322 2 34444432 222222333334456788888875 55667777
Q ss_pred CCeEEEEe--CCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 142 DGTIKYWD--FSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 142 d~~i~vWd--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+-+|.-|| ..+|.... .=.++
T Consensus 179 n~~V~a~dyd~~tG~~sn---------------------------------------------------------r~~i~ 201 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSN---------------------------------------------------------RKVIF 201 (310)
T ss_pred ceEEeeeecCCCcccccC---------------------------------------------------------cceeE
Confidence 88888888 44554321 11234
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
|++..+.. .....-.+++..+|++.+ +-..++|...|..+++.+ ....-....|+|++|--
T Consensus 202 dlrk~~~~------e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L-----~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 202 DLRKSQPF------ESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL-----LEIKLPTPQITSCCFGG 263 (310)
T ss_pred EeccCCCc------CCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-----EEEEcCCCceEEEEecC
Confidence 44433222 122233455566777765 457899999999999865 33333477899999964
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.95 E-value=2.1 Score=43.11 Aligned_cols=265 Identities=14% Similarity=0.023 Sum_probs=123.4
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC----CCEEEEeecC----
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGLVALRAEN---- 467 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d---- 467 (762)
....|+|.|||+++++ ...|.|++++ ..+.....+.... . .....+.....++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~--v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~ 77 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-E--VFADGERGLLGIAFHPDFASNGYLYVYYTNADEDG 77 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-T--TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSS
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-c--ccccccCCcccceeccccCCCCEEEEEEEcccCCC
Confidence 3578999999877665 5699999999 4444312211111 0 01112357789999994 3333333321
Q ss_pred ----ceEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc----ccCCCceeEEEEEEecC
Q 040987 468 ----YCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA----EEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 468 ----g~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~----~~~~~~d~~i~iwd~~~ 538 (762)
..|.-|....+ .........................++|.|||.+.++.+.... .+.....+.|.-.+...
T Consensus 78 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 78 GDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 24444555443 1111111111110000011334567999999977666553322 11111234454445432
Q ss_pred CC------------ceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEE-eCCCcEEEEEcccccccc----c--------
Q 040987 539 QN------------KEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSS-SYGGDFKVWICNDELQQK----D-------- 592 (762)
Q Consensus 539 ~~------------~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~-~~dg~i~iwd~~~~~~~~----~-------- 592 (762)
.- ....+ -.++ . ....++|+|. |.++++= +.++.=.|--+..+..-- .
T Consensus 158 ~~p~dnP~~~~~~~~~~i~----A~Gl-R-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~ 231 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIY----AYGL-R-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGP 231 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEE----EE---S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS
T ss_pred cCCCCCccccCCCceEEEE----EeCC-C-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCC
Confidence 20 01111 1244 3 3457999998 6665542 223322332232222100 0
Q ss_pred -----ccCCce-eeeeecccCCCCeEEEEEcC-------CCcEEEEEc-CCeEEEEeCCCCeEEE----EeccccCceeE
Q 040987 593 -----LQSSGW-SCHAVGSYKKKAMTAAAFSA-------DGSVLAVAA-ETVITLWDPDRNVLVA----VIGETLTPIMN 654 (762)
Q Consensus 593 -----~~~~~~-~~~~~~~~~~~~i~~~~~s~-------dg~~la~~~-d~~i~iwd~~~~~~~~----~l~~~~~~v~~ 654 (762)
...... .+..... +...++.+.|-. .|.+++... .+.|....++.+..+. .+.....++..
T Consensus 232 ~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~ 310 (331)
T PF07995_consen 232 PIGDAPSCPGFVPPVFAYP-PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRD 310 (331)
T ss_dssp -ECTGSS-TTS---SEEET-TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEE
T ss_pred ccccccCCCCcCccceeec-CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceE
Confidence 000000 0111112 235666777754 445666555 7788888887553222 23334447999
Q ss_pred EEEeCCCCEEEEEEcCCC
Q 040987 655 MSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~ 672 (762)
+++.|||.+.++...+|.
T Consensus 311 v~~~pDG~Lyv~~d~~G~ 328 (331)
T PF07995_consen 311 VAQGPDGALYVSDDSDGK 328 (331)
T ss_dssp EEEETTSEEEEEE-TTTT
T ss_pred EEEcCCCeEEEEECCCCe
Confidence 999999999998887776
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.023 Score=51.00 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=70.3
Q ss_pred eeEEEEecCCCeEEEEecCC-ccee-eeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCc-ccee
Q 040987 43 SFIFAVARSSGLCRTAEYPA-VNSK-MIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHK-APVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~-~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~-~~V~ 118 (762)
..-+++|..+|.|.+|+... ++.. ........|.+-+.--.++.+..+++ +|.|+-|+++-++.+....+|. .++.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e 149 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE 149 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence 34678899999999998772 2221 22334444544233334444555555 7999999999999888888888 6677
Q ss_pred EEEEeCCCCcccceeeeEEee--ecCCeEEEEeCCC
Q 040987 119 TVIVVPASTPATKILSYCWTA--SLDGTIKYWDFSV 152 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~--s~d~~i~vWd~~~ 152 (762)
.+..+..+ .+++++ |.|..++.|++..
T Consensus 150 ~~ivv~sd-------~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 150 ELIVVGSD-------EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeEEecCC-------ceEEeeccccchhhhhcchhh
Confidence 76666666 466666 7788888888764
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.1 Score=47.88 Aligned_cols=194 Identities=11% Similarity=0.096 Sum_probs=102.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
..-.|+|++. +|..+......|. .+-.+.|+.+..+|+...+|++.+|++...... ............|..+.|..
T Consensus 62 a~~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie--~~svg~e~~~~~I~ec~~f~ 137 (829)
T KOG2280|consen 62 ARPYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE--SNSVGFESQMSDIVECRFFH 137 (829)
T ss_pred cceeEEEEec-cccchHHHHhcCC-CeeeecccCCceEEEEeccceEEEeecchhhhc--ccccccccccCceeEEEEec
Confidence 3446788876 4555533334444 888999999999999999999999999876543 10011122334567777776
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe-cCCCEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS-SDGAYLYS 370 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s 370 (762)
+|-.+. ..+|.+.+-+-.+..........+.. .-+..+...+..|.....-+... +.+..
T Consensus 138 ~GVavl--t~~g~v~~i~~~~~~~~~~~~diP~~--------------~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~--- 198 (829)
T KOG2280|consen 138 NGVAVL--TVSGQVILINGVEEPKLRKMPDIPYN--------------ELPKSCWTVFQPHRQSTILLDVDVAVGLH--- 198 (829)
T ss_pred CceEEE--ecCCcEEEEcCCCcchhhhCCCCCCc--------------cCCCcceeEecCCCcceeEEeechhhhhc---
Confidence 774333 34555555432211110000000000 00001111111121111111110 11111
Q ss_pred EecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..-+....+...+....+.+..+..||+.++|+.-...|.+.+-+.+..+....+..
T Consensus 199 ------~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 199 ------ICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ------ccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 1111111222222333346788899999999999999999999999887777766653
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.052 Score=59.68 Aligned_cols=101 Identities=22% Similarity=0.346 Sum_probs=73.6
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.+..++.|+..|.+-..|....-.. + .......++|++++|+.||+.++.|- +|.|.+||+..++.++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~--------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--L--------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV 167 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--h--------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceee
Confidence 3557888888888888887654211 0 01123468999999999999999997 99999999999999998
Q ss_pred eccccCceeEE---EEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 645 IGETLTPIMNM---SFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 645 l~~~~~~v~~~---~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
+..|..+...+ .+..++..++++...|. +|.+
T Consensus 168 i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs----f~~l 202 (1206)
T KOG2079|consen 168 ITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS----FWKL 202 (1206)
T ss_pred eeecCCccceEEEEEEeCCCcEEEEccCCCc----eEEE
Confidence 87777775544 34456666777766553 5654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=2.6 Score=42.47 Aligned_cols=158 Identities=14% Similarity=0.036 Sum_probs=84.3
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
...+..+.+.+++.+++++ ..|.+..-....++......... ...+.++.+.++++.++++ ..|.+++-
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~---------~~~l~~i~~~~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNS---------SRRLQSMGFQPDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCCCCCeEEEeeCCC---------cccceeeeEcCCCCEEEEe-cCCEEEEc
Confidence 4578889999998777665 45544432112223222222211 1577889999999877665 55765432
Q ss_pred EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 474 SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 474 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
....+..-......... ....+..+.+.|++..++++ .++.+. ...+.++.-...... ..-
T Consensus 241 s~d~G~sW~~~~~~~~~------~~~~l~~v~~~~~~~~~~~G----------~~G~v~-~S~d~G~tW~~~~~~--~~~ 301 (334)
T PRK13684 241 DPDDLESWSKPIIPEIT------NGYGYLDLAYRTPGEIWAGG----------GNGTLL-VSKDGGKTWEKDPVG--EEV 301 (334)
T ss_pred cCCCCCccccccCCccc------cccceeeEEEcCCCCEEEEc----------CCCeEE-EeCCCCCCCeECCcC--CCC
Confidence 23333221111111000 02457888999988877776 345444 333433322221100 111
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
......+.|..+++.+++| ..|.|..|+
T Consensus 302 -~~~~~~~~~~~~~~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 302 -PSNFYKIVFLDPEKGFVLG-QRGVLLRYV 329 (334)
T ss_pred -CcceEEEEEeCCCceEEEC-CCceEEEec
Confidence 3357778887777666654 568776665
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.63 E-value=4.6 Score=45.47 Aligned_cols=259 Identities=7% Similarity=-0.074 Sum_probs=126.7
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe----------------CCCCEEEEeecCce
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN----------------HDGGLVALRAENYC 469 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------------~~~~~l~~~~~dg~ 469 (762)
+..+++++.++.|.-+|..+|+.+..+.......... .+ .....+++- ..+..++.++.|+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~-~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~ 271 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR-QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDAR 271 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc-cc-ccccceEEecCCcccccccccccccccCCEEEEecCCCe
Confidence 4567777788899999999999988876543211000 00 011222221 13457888999999
Q ss_pred EEEEEcCCCCceeeEEeeccc-c-cCCCCcceeEEEEEEec--CCCeEEEEeeecc-ccCCCceeEEEEEEecCCCceeE
Q 040987 470 IHFYSLLDDRGISEVQVCERN-H-QPGDDVTVVVTLVALSQ--DGSLMSTVDIKLA-EEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 470 i~i~d~~~~~~~~~~~~~~~~-~-~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
+.-.|..+++....+...... . .........-..+.-.| .+..+++++.... ......++.|+-+|..+++..+.
T Consensus 272 LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 272 LIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999887665321100 0 00000000000111112 1234444431100 00001368899999999999888
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC-cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.... .+. . ... -+.+.....++.+. ...-+|.+.+...... +. .+..+-...+..
T Consensus 352 ~~~g--~p~-~---~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt------------Gn----~~pd~~g~~r~~ 407 (764)
T TIGR03074 352 WDPG--NPD-P---TAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM------------GN----QTPDQWGGDRTP 407 (764)
T ss_pred EecC--CCC-c---ccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC------------CC----ccccccCCcccc
Confidence 7531 111 0 000 01233222121111 1222333322211100 00 000010001100
Q ss_pred EEEc-CCeEEEEeCCCCeEEEEeccccCceeE---------EEEeC-CCC---EEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 624 AVAA-ETVITLWDPDRNVLVAVIGETLTPIMN---------MSFVG-SSE---YLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~---------~~~s~-dg~---~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.... .+.|.-.|.++|+..-.++.....+++ +.+.. +|+ .++.++.+|. +++.|-++|++++..
T Consensus 408 ~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~--~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 408 ADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQ--IYVLDRRTGEPIVPV 485 (764)
T ss_pred CcccccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCE--EEEEECCCCCEEeec
Confidence 0011 466777888888877665431111111 22322 564 7888888887 999999999999986
Q ss_pred EEe
Q 040987 690 LLH 692 (762)
Q Consensus 690 ~~~ 692 (762)
+..
T Consensus 486 ~e~ 488 (764)
T TIGR03074 486 EEV 488 (764)
T ss_pred eee
Confidence 654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.9 Score=42.16 Aligned_cols=158 Identities=13% Similarity=0.071 Sum_probs=87.5
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
+.+..+.+.|++.+++++ ..|.+..- ...+..... ...... ...+..+.+.++++.++++.
T Consensus 173 g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~--~~~~~~------~~~l~~i~~~~~g~~~~vg~--------- 233 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWT--PHQRNS------SRRLQSMGFQPDGNLWMLAR--------- 233 (334)
T ss_pred ceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEE--EeeCCC------cccceeeeEcCCCCEEEEec---------
Confidence 577889999998766554 45544432 112211111 111111 45689999999999888774
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+.+.+=..+.+..-...... .... ...+.++.+.|++..++++ .+|.+. .....++ .|........
T Consensus 234 -~G~~~~~s~d~G~sW~~~~~~-~~~~-~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~--------tW~~~~~~~~ 300 (334)
T PRK13684 234 -GGQIRFNDPDDLESWSKPIIP-EITN-GYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGK--------TWEKDPVGEE 300 (334)
T ss_pred -CCEEEEccCCCCCccccccCC-cccc-ccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCC--------CCeECCcCCC
Confidence 355543223333221111100 0001 3457889999988766554 566554 3444443 2222211111
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
-....+.+.|..+++.+++|..|.|.-|+-
T Consensus 301 ~~~~~~~~~~~~~~~~~~~G~~G~il~~~~ 330 (334)
T PRK13684 301 VPSNFYKIVFLDPEKGFVLGQRGVLLRYVG 330 (334)
T ss_pred CCcceEEEEEeCCCceEEECCCceEEEecC
Confidence 234678888888888999888999887763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=3.1 Score=44.76 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=94.8
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
-.|+|+++...... +....|. .+..+.|+.+.. |++-..+|++++|++.+...-...
T Consensus 64 ~~I~If~~sG~lL~-----~~~w~~~-~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ge~ie~~s---------------- 120 (829)
T KOG2280|consen 64 PYIRIFNISGQLLG-----RILWKHG-ELIGMGWSDDEE-LICVQKDGTVHVYGLLGEFIESNS---------------- 120 (829)
T ss_pred eeEEEEeccccchH-----HHHhcCC-CeeeecccCCce-EEEEeccceEEEeecchhhhcccc----------------
Confidence 45889988876544 5555555 788999997776 455568999999998544211100
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEE-EecCCCceeccCCCCC---CeEEEEeCCCCC---e
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV-WQLDTGKKKFLPRIGS---PLLYFTESPDPS---L 408 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~-wd~~~~~~~~~~~~~~---~v~~~~~s~~~~---~ 408 (762)
.-.......|..+.|..+|-.+.+ .+|++.+ -+.........+..+. +-.|-...+++. .
T Consensus 121 -----------vg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ 187 (829)
T KOG2280|consen 121 -----------VGFESQMSDIVECRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTI 187 (829)
T ss_pred -----------cccccccCceeEEEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCccee
Confidence 001112234555666656633333 3344443 3333323322222111 112222222211 1
Q ss_pred EEEEecCCcEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 409 SSISCADNQVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
++-....-...++...... ....+... .+.+..+.+||+.++|+.-...|.+.+-+....+...++.
T Consensus 188 ll~v~~~v~~~~~q~~~~~~q~~~~~~~----------~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 188 LLDVDVAVGLHICQVEESRVQLHALSWP----------NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEeechhhhhcccceecccccccccCCC----------CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111000001111111110 01111111 1577889999999999999999999998887766555544
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.051 Score=35.67 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=28.8
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
...|.+++|+|...+||.+..+|.|.++++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45699999999999999999999999999843
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=1 Score=49.06 Aligned_cols=220 Identities=9% Similarity=0.064 Sum_probs=117.5
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC------CeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ------RKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
..+..+|..++.-...........-.++++..+--|+++|.+ ..+..||..+.+-. .. .............
T Consensus 301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~--~~-a~M~~~R~~~~v~ 377 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWT--PV-APMNTKRSDFGVA 377 (571)
T ss_pred ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCcee--cc-CCccCccccceeE
Confidence 688899998886554444444445566666655444445555 45778888777643 11 1111111111112
Q ss_pred EEcCCCcEEEEeecCCe-----EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDVTGR-----ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~-----v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+ +|...|+|+.||. +..||..+.+. ..+..+.........+ .
T Consensus 378 ~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W----------------------------~~va~m~~~r~~~gv~--~ 425 (571)
T KOG4441|consen 378 VL--DGKLYAVGGFDGEKSLNSVECYDPVTNKW----------------------------TPVAPMLTRRSGHGVA--V 425 (571)
T ss_pred EE--CCEEEEEeccccccccccEEEecCCCCcc----------------------------cccCCCCcceeeeEEE--E
Confidence 22 7888889988863 66677655432 1122221111112222 2
Q ss_pred cCCCEEEEEecC------CeEEEEecCCCceeccCCCCCCeEEE-EeCCCCCeEEEEecCC-----cEEEEEcCCceEEE
Q 040987 363 SDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSPLLYF-TESPDPSLSSISCADN-----QVHLLKMPSMEIIR 430 (762)
Q Consensus 363 ~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~v~~~-~~s~~~~~l~~~~~d~-----~i~i~d~~~~~~~~ 430 (762)
-+|+..+.||.+ .++..||..++..........+=... .-.-++...++|+.++ .+..||..+.+-..
T Consensus 426 ~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~ 505 (571)
T KOG4441|consen 426 LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM 505 (571)
T ss_pred ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence 367777777754 45788999998886655544321111 2234677777787765 36778877654332
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEEcCCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYSLLDD 478 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 478 (762)
. .....+. ..+ .+ ..-+++..++|+.|| +|..||..++
T Consensus 506 v-~~m~~~r-------s~~-g~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 506 V-APMTSPR-------SAV-GV-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred c-ccCcccc-------ccc-cE-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2 1111000 111 11 122466777777664 5667776655
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.44 Score=42.24 Aligned_cols=177 Identities=12% Similarity=0.066 Sum_probs=95.1
Q ss_pred CCCEEEEEe--C-CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEE
Q 040987 84 DVKRLLVCT--S-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTID 160 (762)
Q Consensus 84 dg~~la~~~--~-~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~ 160 (762)
||.++.+.+ . ..|++||+.+|+.+..-.-....+..=-...-|+ .+-+-.-.|+.-.++|.++.+++..+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd------~~y~LTw~egvaf~~d~~t~~~lg~~~ 128 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGD------YFYQLTWKEGVAFKYDADTLEELGRFS 128 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccc------eEEEEEeccceeEEEChHHhhhhcccc
Confidence 456666665 2 7999999999988764432212222111112221 222334567888999999999998887
Q ss_pred eccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC----
Q 040987 161 VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK---- 236 (762)
Q Consensus 161 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~---- 236 (762)
....-+.++ .|+.+. +++.....++.-|.++............+
T Consensus 129 y~GeGWgLt----------~d~~~L----------------------imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~ 176 (262)
T COG3823 129 YEGEGWGLT----------SDDKNL----------------------IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS 176 (262)
T ss_pred cCCcceeee----------cCCcce----------------------EeeCCceEEEecCHHHhhhcceEEEEECCeecc
Confidence 776666663 233331 34445556666677666555333222211
Q ss_pred CceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhh-------eeeeeeeccCcCeEEEEEcCCC-cEEEEe
Q 040987 237 EPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERV-------VMRKITLHHTKKLTVLAFHPTQ-RIVAAG 299 (762)
Q Consensus 237 ~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~-------~~~~~~~~~~~~v~~~~~sp~~-~~l~~~ 299 (762)
.++-+.|- ||...| +-.+..|...+..+++.... ........|.+-.+.+++.|++ +++++|
T Consensus 177 ~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 177 KLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred cccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 22233332 455554 33344444444444432200 0112223455677899999987 455555
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.99 E-value=1.8 Score=45.18 Aligned_cols=157 Identities=11% Similarity=0.050 Sum_probs=91.4
Q ss_pred ccceeEEEEecCCCEEEEEe---cCCeEEEEecCCCceeccCCCCCCeEEEEeCCC----CCeEEEEecCCcEEEEEcCC
Q 040987 353 PSEVSVLIFSSDGAYLYSGG---KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD----PSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d~~i~i~d~~~ 425 (762)
-.++..++|. ||+.++-.. .+|.+++=|- ...+.-..|..+.|.|- -..+++.-....|.||.+..
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds------~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS------KVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCCc------cEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3468889997 666655432 1222222111 12333456889999884 33455555788999999862
Q ss_pred -----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 426 -----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 -----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.+.+..-..+-. +...--...+.|+|....|++-+....-.++++......-...... .+.
T Consensus 92 s~~e~~K~l~sQtcEi~-----e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~---------~G~ 157 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR-----EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT---------SGL 157 (671)
T ss_pred Cccccccceeeeeeecc-----CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC---------Cce
Confidence 222222111110 0001233578899998888877766655666766544333332221 567
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|.|.+|.+||+.|+++-. ..-.-++||-..
T Consensus 158 IhCACWT~DG~RLVVAvG--------SsLHSyiWd~~q 187 (671)
T PF15390_consen 158 IHCACWTKDGQRLVVAVG--------SSLHSYIWDSAQ 187 (671)
T ss_pred EEEEEecCcCCEEEEEeC--------CeEEEEEecCch
Confidence 999999999999888752 334567787553
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.76 Score=47.20 Aligned_cols=150 Identities=15% Similarity=0.160 Sum_probs=79.5
Q ss_pred CCceEEEECCCCCEEEEEe------------C-CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC
Q 040987 236 KEPQVITISSSGKYFGIRK------------Q-RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~------------~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
..+..|+|.++|+++++.. . ..|.+++-.++.-..... ..+.........+++.+++ .++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~-~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKS-NVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCccee-EEeecCCCCccceeEecCC-EEE-eCCC
Confidence 5678899999999887642 2 277777654332211111 2333334456889999998 444 4444
Q ss_pred CeEEEE-eccCCceeecccccccccccccccCCCCcccCCccccceeeec----cccceeEEEEecCCCEEEEEecC---
Q 040987 303 GRILIW-RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW----HPSEVSVLIFSSDGAYLYSGGKE--- 374 (762)
Q Consensus 303 g~v~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~s~~g~~l~s~~~d--- 374 (762)
. |..+ +.......... ....+..+.. +......++|.|||.+.++.+..
T Consensus 91 ~-i~~~~d~~gdg~ad~~----------------------~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~ 147 (367)
T TIGR02604 91 D-ILFLRDKDGDDKADGE----------------------REVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLAS 147 (367)
T ss_pred e-EEEEeCCCCCCCCCCc----------------------cEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCc
Confidence 3 4433 44321100000 0000111211 23446789999999766654421
Q ss_pred ----------------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 375 ----------------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 375 ----------------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
+.|..++.++++...+...-.....++|+++|+++++
T Consensus 148 ~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 148 KVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred eeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 3455666665554333322334567888888877654
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.85 E-value=3 Score=37.88 Aligned_cols=161 Identities=11% Similarity=0.136 Sum_probs=82.7
Q ss_pred CEEEEeecCceEEEEEcCCCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEE--
Q 040987 459 GLVALRAENYCIHFYSLLDDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFW-- 534 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iw-- 534 (762)
..|+.+...+.|.+|++.... ....+.. -+.|..++++..|++|++--.+.... ....+|+|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-----------v~~V~~l~y~~~GDYlvTlE~k~~~~---~~~fvR~Y~N 94 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-----------VGRVLQLVYSEAGDYLVTLEEKNKRS---PVDFVRAYFN 94 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-----------hhheeEEEeccccceEEEEEeecCCc---cceEEEEEEE
Confidence 455555677789999998332 2333332 45689999999999999986431111 11255664
Q ss_pred -Eec-CC-Ccee-EEE----------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc-cccc
Q 040987 535 -VSG-TQ-NKEF-TLS----------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ-QKDL 593 (762)
Q Consensus 535 -d~~-~~-~~~~-~~~----------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 593 (762)
+.. .. .+.. .+. ..+.-+- .....+++-.|-..-|+.|+ ++.+.+|.+..... ...+
T Consensus 95 Wr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~ 172 (215)
T PF14761_consen 95 WRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKF 172 (215)
T ss_pred hhhhcccCCcEEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccc
Confidence 222 11 1110 000 0001122 44567777777433444454 46799998876544 1111
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
.--.+.........+-....+++. +.|+|..++..+++..+.
T Consensus 173 ~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 173 SFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMSDLEVLVLKLE 214 (215)
T ss_pred cEEechhhhhheecCceEEEEEEE--eeEEEEecCCEEEEEEEe
Confidence 000000000000112223455553 458888888888877653
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.1 Score=44.72 Aligned_cols=91 Identities=11% Similarity=0.130 Sum_probs=55.2
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCC----ceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD----RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
-.|..+.++|+|++||..|..| |.|-.+... ..+...........+..+. ......+...|.
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~-------------~~~~~~~~~~i~ 150 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDE-------------RFFTSNSSLEIK 150 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEech-------------hhccCCCCceEE
Confidence 4688999999999999888766 555544211 1111111111111111110 001123456788
Q ss_pred EEEEecC---CCEEEEEecCCeEEEEecCCCc
Q 040987 358 VLIFSSD---GAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 358 ~~~~s~~---g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
.+.|+|. +..|+.-..|+++++||+....
T Consensus 151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 9999986 4788889999999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.3 Score=45.63 Aligned_cols=97 Identities=11% Similarity=0.007 Sum_probs=52.3
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEE-ecCCC-----ce-ec---cCC----CCCCeEEEEeCCCCCeEEEEecC----
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVW-QLDTG-----KK-KF---LPR----IGSPLLYFTESPDPSLSSISCAD---- 415 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~w-d~~~~-----~~-~~---~~~----~~~~v~~~~~s~~~~~l~~~~~d---- 415 (762)
.....+++.++| .+ .+... .|..+ |.... +. .. +.. .......++|.|||.+.++-+..
T Consensus 72 ~~p~Gi~~~~~G-ly-V~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~ 148 (367)
T TIGR02604 72 SMVTGLAVAVGG-VY-VATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK 148 (367)
T ss_pred CCccceeEecCC-EE-EeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence 345788998888 44 44443 45444 44321 21 11 111 12346789999999876654421
Q ss_pred ---------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 416 ---------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 416 ---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+.+..++..+++....-.+. .....++|+++|+++++-
T Consensus 149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~-----------rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF-----------QNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred eccCCCccCcccccCceEEEEecCCCeEEEEecCc-----------CCCccceECCCCCEEEEc
Confidence 33555555544332222222 234678899988876653
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.64 E-value=1.4 Score=39.27 Aligned_cols=181 Identities=14% Similarity=0.109 Sum_probs=95.1
Q ss_pred CCCEEEEEecC--CeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEE-EecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 364 DGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSI-SCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 364 ~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+|.++.+.+.- ..|++||+.+++........ ..+..=-...-|..+.. .-.+|.-..+|.++.+++..+.-.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~---- 130 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYE---- 130 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccC----
Confidence 55666666543 46999999999886443333 12211111111222222 236788889999887777665422
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
+.-.. ...|++.|+.+....+++.-|.++-....++.....+.. -..++.+.|- ||...|-.-
T Consensus 131 -------GeGWg--Lt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-----v~~LNELE~V-dG~lyANVw-- 193 (262)
T COG3823 131 -------GEGWG--LTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-----VSKLNELEWV-DGELYANVW-- 193 (262)
T ss_pred -------Cccee--eecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-----cccccceeee-ccEEEEeee--
Confidence 22233 345666687777777888888887766666655443221 1112223331 343333322
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEE-------eecCCCCCceEEEEEcCCCC-eEEEE
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTI-------VYEPHRDAGISAVAFHPNRR-AAVSS 573 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~~~h~~~~v~~~~~spd~~-~l~~~ 573 (762)
....|...+.++++....+... ....| .+-.+.+++.|++. ++++|
T Consensus 194 -------~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~-~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 194 -------QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSN-DNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred -------eecceEEEcCCCCcEEEEEEccCCchhcCccccc-cccccceeecCcCCeEEEec
Confidence 2233444444444433222110 01123 45678899999874 55554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=6.3 Score=40.57 Aligned_cols=155 Identities=14% Similarity=0.144 Sum_probs=87.3
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
+....+..++|+.+++++.....++-||- +... ....... ...+..+.+.+++..++++.
T Consensus 239 Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~---------~~~l~~v~~~~dg~l~l~g~-------- 299 (398)
T PLN00033 239 GTFSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRAS---------ARRIQNMGWRADGGLWLLTR-------- 299 (398)
T ss_pred cceeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCC---------ccceeeeeEcCCCCEEEEeC--------
Confidence 34455677888887777654433333443 2211 1111110 45588999999999888774
Q ss_pred CceeEEEEEEecCCCce--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 526 GSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
.+.+. +....+..- ..+........ ...+.++.|.+++..+++| ..|.+.... ..++ .|.....
T Consensus 300 --~G~l~-~S~d~G~~~~~~~f~~~~~~~~-~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~--------tW~~~~~ 365 (398)
T PLN00033 300 --GGGLY-VSKGTGLTEEDFDFEEADIKSR-GFGILDVGYRSKKEAWAAG-GSGILLRST-DGGK--------SWKRDKG 365 (398)
T ss_pred --CceEE-EecCCCCcccccceeecccCCC-CcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCc--------ceeEccc
Confidence 34433 333333211 02221111111 3358899999887766655 567655543 3333 2333222
Q ss_pred cccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
...-....+.+.|.++++.+++|.+|.|.-|
T Consensus 366 ~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 366 ADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred cCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 2223467889999999999999989887655
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=94.30 E-value=4 Score=37.06 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=38.4
Q ss_pred eecCCCEEEEEeCCEEEEEEcc--cceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 81 FSNDVKRLLVCTSNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 81 ~s~dg~~la~~~~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
-++.+.++++++++.|.+|+++ ..+++.+|..- +.|..+.++..| .||+|-=.
T Consensus 25 ~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~G-------DYlvTlE~ 79 (215)
T PF14761_consen 25 CGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAG-------DYLVTLEE 79 (215)
T ss_pred ccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecccc-------ceEEEEEe
Confidence 3343445455667999999987 34566777644 789999999999 78888633
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.27 E-value=1.9 Score=46.54 Aligned_cols=118 Identities=14% Similarity=0.251 Sum_probs=72.5
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc--CCCCeEEEEeCCCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH--PNRRAAVSSSYGGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--pd~~~l~~~~~dg~i 579 (762)
.-+.-+.-++..++.+ ....+.|||...+...++.. + .. .+.|.++.|. |||+.+.+.+..+.|
T Consensus 33 ~li~gss~~k~a~V~~---------~~~~LtIWD~~~~~lE~~~~---f-~~-~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDS---------SRSELTIWDTRSGVLEYEES---F-SE-DDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred ceEeecccCcEEEEEC---------CCCEEEEEEcCCcEEEEeee---e-cC-CCceeeceeeecCCCCEEEEEEcCcEE
Confidence 3444444455444443 56799999999887443332 1 33 5689999885 588888888889999
Q ss_pred EEEEcccccccccccCCceeeee---ecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 580 KVWICNDELQQKDLQSSGWSCHA---VGSYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
.+|.-........ .+.|.... .......+|.+..|.+||.++ +|+++.+.|+|-
T Consensus 99 ~l~~Q~R~dy~~~--~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~Lv-V~sGNqlfv~dk 155 (631)
T PF12234_consen 99 LLYTQLRYDYTNK--GPSWAPIRKIDISSHTPHPIGDSIWLKDGTLV-VGSGNQLFVFDK 155 (631)
T ss_pred EEEEccchhhhcC--CcccceeEEEEeecCCCCCccceeEecCCeEE-EEeCCEEEEECC
Confidence 9885432111111 11232221 112223688999999998555 455677888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.64 Score=51.95 Aligned_cols=152 Identities=11% Similarity=0.073 Sum_probs=95.1
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-----CCceEEEEEcCCCC-eEE
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-----DAGISAVAFHPNRR-AAV 571 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-----~~~v~~~~~spd~~-~l~ 571 (762)
...+..+...+|+...++.... ++-.|..||+++-..........+..|. .....++.|.|.=. ..+
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~ts-------ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTS-------NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cccceEEEeccCCceEEEEEec-------CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 3456777888888877666532 4558999998764332211111111110 33456778888532 345
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc---
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE--- 647 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~--- 647 (762)
.+..|+.|++..+......... .......++++|+|.|+.+++|. .|++.-|...- +....+.+
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s-----------~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~ 240 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTS-----------FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPV 240 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcc-----------cCcccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCc
Confidence 5667888888876543322211 12356789999999999999997 89998887653 32223322
Q ss_pred -ccCceeEEEEeCCCCEEEEEE
Q 040987 648 -TLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 648 -~~~~v~~~~~s~dg~~l~s~~ 668 (762)
....|.+++|-..-.+|++-+
T Consensus 241 ~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 241 EENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred CCCcceeEEEEecceeEEEEec
Confidence 135699999999877777653
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.19 E-value=2.3 Score=46.00 Aligned_cols=110 Identities=13% Similarity=0.189 Sum_probs=69.3
Q ss_pred ceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc--CCCcEEEEEc-CCeEEE
Q 040987 557 GISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS--ADGSVLAVAA-ETVITL 633 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg~~la~~~-d~~i~i 633 (762)
...-+.-|.-++..++-+....+.|||...+....... + ...+.|.++.|. |||+.+.+.+ ...|.+
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~---------f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEES---------F-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeee---------e-cCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 33444445555555554445679999998877443331 1 346788999885 6888765554 999998
Q ss_pred EeCC-----C----CeEEEEe--cccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 634 WDPD-----R----NVLVAVI--GETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 634 wd~~-----~----~~~~~~l--~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|.-. . ...+..+ ..|+ .+|.+..|.+||..++.+|.. +.|+|-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGNq----lfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGNQ----LFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCCE----EEEECC
Confidence 8532 1 1222222 3333 579999999999766666432 888864
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.19 E-value=5 Score=37.66 Aligned_cols=240 Identities=10% Similarity=0.009 Sum_probs=140.8
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
..-..++-+|||..-+++...+.|--.|..+|+....--+.. .....+...|||...++-+.. -|.-+|
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~G----------a~Phgiv~gpdg~~Witd~~~-aI~R~d 130 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSG----------ASPHGIVVGPDGSAWITDTGL-AIGRLD 130 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCC----------CCCceEEECCCCCeeEecCcc-eeEEec
Confidence 345667888999888888888888888988888765543332 345678888998877664444 455556
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec--cccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL--AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
-++.+ +.+++..... .........|.+.|++-.++.... ..+ ...+.|++|+...
T Consensus 131 pkt~e-vt~f~lp~~~------a~~nlet~vfD~~G~lWFt~q~G~yGrLd--Pa~~~i~vfpaPq-------------- 187 (353)
T COG4257 131 PKTLE-VTRFPLPLEH------ADANLETAVFDPWGNLWFTGQIGAYGRLD--PARNVISVFPAPQ-------------- 187 (353)
T ss_pred Ccccc-eEEeeccccc------CCCcccceeeCCCccEEEeeccccceecC--cccCceeeeccCC--------------
Confidence 55442 3333333221 145678889999999988885210 000 0234555555442
Q ss_pred CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 553 HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 553 h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...-..++..|||..-++.-.+..|-..|..++....... ..........+--+|.|+.-++-. .+.+
T Consensus 188 --G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~---------P~~~~~gsRriwsdpig~~wittwg~g~l 256 (353)
T COG4257 188 --GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ---------PNALKAGSRRIWSDPIGRAWITTWGTGSL 256 (353)
T ss_pred --CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC---------CCcccccccccccCccCcEEEeccCCcee
Confidence 3344578889999988776667777777776663322221 111123344555567777766654 7888
Q ss_pred EEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 632 TLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 632 ~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.-+|..+..-+. .|.+....-.++.....++.-.+--.-+. |.-+|-+
T Consensus 257 ~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea~aga--i~rfdpe 305 (353)
T COG4257 257 HRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEADAGA--IGRFDPE 305 (353)
T ss_pred eEeCcccccceeeeCCCCCCCcceeeeccCCcEEeeccccCc--eeecCcc
Confidence 888877654221 33443344455555555544433322332 4444443
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=94.01 E-value=5 Score=41.81 Aligned_cols=58 Identities=21% Similarity=0.181 Sum_probs=37.4
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEEeecCCCCCceEEEEEcCCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
....++|.|||++|++-- ..+.|++++..+..... .+........ .+....|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER---------~~G~I~~v~~~~~~~~~~~~l~~v~~~~g-e~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTER---------ATGKILRVNPETGEVKVVFTLPEIVNDAQ-HNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEe---------cCCEEEEEeCCCCceeeeecCCceeccCC-CCceeeEEECCCc
Confidence 478899999998887763 25889998865543211 1111111112 5678999999884
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.9 Score=40.46 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=91.0
Q ss_pred ccceeEEEEecCCCEEEEEecCCe------EEEEecCC--Cc---e-----eccCCCCC--------CeEEEEeCCCCCe
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGV------LVVWQLDT--GK---K-----KFLPRIGS--------PLLYFTESPDPSL 408 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~------i~~wd~~~--~~---~-----~~~~~~~~--------~v~~~~~s~~~~~ 408 (762)
-+.+..+.+.+++..+++.+++|. ++.+++.. +. . ..+....+ ...++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356778889866667777777777 66665543 11 1 11111111 3446788778887
Q ss_pred EEEEecC------CcEEEEEcCCceEEEEEccCCCC--CC---CCCcccCceeeEEEeCCCCEEEEeecC-----c--e-
Q 040987 409 SSISCAD------NQVHLLKMPSMEIIRSISGIKLP--CP---LPEEYKGLCRDIAFNHDGGLVALRAEN-----Y--C- 469 (762)
Q Consensus 409 l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~--~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g--~- 469 (762)
+++.-.+ ..|..++.. |+....+.-...- .. .....+....+++++|||+.|+++.+. + .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 7776556 678888876 6666655221110 00 122234678899999999976665432 1 1
Q ss_pred ------EEE--EEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 470 ------IHF--YSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 470 ------i~i--~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
+++ ||..+ +.....+........... ....+..+.+-+++++|+.=
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~-~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAP-GDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCcccccc-CCCCceeEEEECCCcEEEEE
Confidence 444 45444 223333333322100000 15668888999998866653
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=93.53 E-value=21 Score=42.74 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...|+.++.-.+.++++.- ..+.+.... ..+. ...+.. .+- .+.|..++.....++.|.. .+|
T Consensus 702 ~~~i~a~Avv~~~~fvald----------~qg~lt~h~-k~g~-p~~l~~---~gl-~G~ik~l~lD~~~nL~Alt-~~G 764 (1774)
T PF11725_consen 702 DRVITAFAVVNDNKFVALD----------DQGDLTAHQ-KPGR-PVPLSR---PGL-SGEIKDLALDEKQNLYALT-STG 764 (1774)
T ss_pred cCcceeEEEEcCCceEEec----------cCCcccccc-CCCC-CccCCC---CCC-CcchhheeeccccceeEec-CCC
Confidence 4568888887776666655 667888887 5444 333332 344 6889999999887766654 466
Q ss_pred cEEEEEcccccccccc--cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcC
Q 040987 578 DFKVWICNDELQQKDL--QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE 628 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d 628 (762)
.++--+-........- ....|...... ....+.++.-..|....+.-.|
T Consensus 765 ~Lf~~~k~~WQ~~~~~~~~~~~W~~v~lP--~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 765 ELFRLPKEAWQGNAEGDQMAAKWQKVALP--DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ceeecCHHHhhCcccCCccccCceeccCC--CCCchhhhhcCCCCceEEEecC
Confidence 6554332222111111 12456655433 3456666655555544444334
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.53 E-value=9.4 Score=38.60 Aligned_cols=159 Identities=8% Similarity=0.098 Sum_probs=100.3
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
.+.+-|....+.|.+...|.+.-|........ .+..+.....++|.++.||+|.+.||+--.+.+|.+++....+...
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndD--VpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDD--VPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCC--CCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555666666666666677777776654422 2334445567799999999999999999999999999975443221
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecC--CCceeccCCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD--TGKKKFLPRIGS 395 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~--~~~~~~~~~~~~ 395 (762)
+.....+..+..|....|+.+ .-++.....| +-+|... .........+.-
T Consensus 103 --------------------------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~ 154 (657)
T KOG2377|consen 103 --------------------------EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNL 154 (657)
T ss_pred --------------------------HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhccc
Confidence 112233334456888889865 4566555444 4555443 333345566777
Q ss_pred CeEEEEeCCCCCeEEEEec--CCcEEEEEcCCc
Q 040987 396 PLLYFTESPDPSLSSISCA--DNQVHLLKMPSM 426 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~ 426 (762)
.|.-..|.++.+.++.++. .+.+.=+.++++
T Consensus 155 nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 155 NVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred CccEEEEccccceEeeeccccccccccEEEeec
Confidence 8888999998876554433 344444444443
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.44 E-value=3.1 Score=41.81 Aligned_cols=107 Identities=7% Similarity=0.101 Sum_probs=76.9
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
.+.|.++.||+|.+.+|.--.+.+|.+++....+..... ...| ......|....|+.+ +-+|.-.+..+.+|
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~---~~~c----k~k~~~IlGF~W~~s-~e~A~i~~~G~e~y 137 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY---TQEC----KTKNANILGFCWTSS-TEIAFITDQGIEFY 137 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH---HHHh----ccCcceeEEEEEecC-eeEEEEecCCeEEE
Confidence 679999999999999999999999999998544433322 1112 234567899999877 56666666667777
Q ss_pred eCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 635 DPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 635 d~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.+... +.++..+.|.-.|....|.++-+.+.-++.
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 66543 345556678888999999998876555543
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.82 Score=51.17 Aligned_cols=158 Identities=13% Similarity=0.040 Sum_probs=91.0
Q ss_pred CceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 447 GLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
-.+..+...+|+...++.. .+-.|..||+++-...... ......+...........++.|.|.-......+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l----- 175 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL----- 175 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc-----
Confidence 4556677778876554443 3447899998764332211 1112222211112344567788875433222221
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
.|+.|++..+........- -+- ....++++|+|.|+.++.|-..|++.-|...-... ..++ |..
T Consensus 176 ---~dlsl~V~~~~~~~~~v~s-----~p~-t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik-~~ip-----~Pp- 239 (1405)
T KOG3630|consen 176 ---SDLSLRVKSTKQLAQNVTS-----FPV-TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIK-SEIP-----EPP- 239 (1405)
T ss_pred ---cccchhhhhhhhhhhhhcc-----cCc-ccceeeEEeccccceeeEecCCCeEEEeeccccee-eccc-----CCC-
Confidence 5677877766543322111 012 56789999999999999999999998887643321 1111 111
Q ss_pred cccCCCCeEEEEEcCCCcEEEEE
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
......|.++.|-....++++-
T Consensus 240 -~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 240 -VEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred -cCCCcceeEEEEecceeEEEEe
Confidence 1125789999998877777653
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.10 E-value=12 Score=38.63 Aligned_cols=144 Identities=8% Similarity=0.075 Sum_probs=85.9
Q ss_pred CCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC-----CCCeEEEEecCCcEEEEEcCC--ce----
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP-----DPSLSSISCADNQVHLLKMPS--ME---- 427 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~i~d~~~--~~---- 427 (762)
+...|++|+..|.+++|+...... ........+|..+..-. +...|++ -.-..+.+|.+.. |.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g 114 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG 114 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence 346899999999999999865442 23445667888887532 2234444 5777888888732 11
Q ss_pred ---EEEEEccCCCCCCCCCcccCceeeEEEeC----C-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 428 ---IIRSISGIKLPCPLPEEYKGLCRDIAFNH----D-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 428 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
.+..+..|..+ .....+++-| . ..++.+-+-||.+.+|+-+.-.-...++. .-
T Consensus 115 ~~~~L~~~yeh~l~--------~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-----------~l 175 (418)
T PF14727_consen 115 NQYQLELIYEHSLQ--------RTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-----------FL 175 (418)
T ss_pred cEEEEEEEEEEecc--------cceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-----------CC
Confidence 22333333321 2334455444 2 35788889999999999764321111111 11
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEe
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVS 536 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~ 536 (762)
-...+++.+.-..+++++ ....+.-|..
T Consensus 176 lPgPl~Y~~~tDsfvt~s---------ss~~l~~Yky 203 (418)
T PF14727_consen 176 LPGPLCYCPRTDSFVTAS---------SSWTLECYKY 203 (418)
T ss_pred CCcCeEEeecCCEEEEec---------CceeEEEecH
Confidence 134567777777777776 4456666654
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.9 Score=36.39 Aligned_cols=234 Identities=15% Similarity=0.065 Sum_probs=137.1
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.-..++-.|||..-+++...+.|--.|-.+|+.... ...+..-..+...|||..-++-+.. .|.-+|-++.+..+ +.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~-f~ 140 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR-FP 140 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE-ee
Confidence 345678889998888888888888889999987543 3445566778888888776653222 55556665543322 21
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
-.. +..........|.+.|++.+++... +.|++|+... ......+
T Consensus 141 lp~------~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq--------------------G~gpyGi 194 (353)
T COG4257 141 LPL------EHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ--------------------GGGPYGI 194 (353)
T ss_pred ccc------ccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC--------------------CCCCcce
Confidence 110 1112567788999999988887522 3344444432 2345678
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
+..|||..-++.- .++.|-..|..++... .+.. ..+. ....+.+--+|.|+.-++....+.+..+|.
T Consensus 195 ~atpdGsvwyasl---------agnaiaridp~~~~ae-v~p~--P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdP 261 (353)
T COG4257 195 CATPDGSVWYASL---------AGNAIARIDPFAGHAE-VVPQ--PNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDP 261 (353)
T ss_pred EECCCCcEEEEec---------cccceEEcccccCCcc-eecC--CCcc-cccccccccCccCcEEEeccCCceeeEeCc
Confidence 8899998777754 4456766676665322 1211 0121 223445556777887777666677777776
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-cCCeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-AETVITLWDPDRN 639 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~d~~i~iwd~~~~ 639 (762)
.... |.... +.+....-.++.....|+.-.+- +.+.|.-+|.++.
T Consensus 262 s~~s---------W~eyp-LPgs~arpys~rVD~~grVW~sea~agai~rfdpeta 307 (353)
T COG4257 262 SVTS---------WIEYP-LPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETA 307 (353)
T ss_pred cccc---------ceeee-CCCCCCCcceeeeccCCcEEeeccccCceeecCcccc
Confidence 5433 22111 22333444555555555433322 2456666666654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=5.9 Score=43.37 Aligned_cols=198 Identities=13% Similarity=0.052 Sum_probs=93.9
Q ss_pred cCCCEEEEEecCC------eEEEEecCCCceeccCCCCCCe-EEEEeCCCCCeEEEEecC-----CcEEEEEcCCceEEE
Q 040987 363 SDGAYLYSGGKEG------VLVVWQLDTGKKKFLPRIGSPL-LYFTESPDPSLSSISCAD-----NQVHLLKMPSMEIIR 430 (762)
Q Consensus 363 ~~g~~l~s~~~dg------~i~~wd~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~ 430 (762)
.++..++.||.++ .+..||..+.+.........+- ......-+++.++.|+.+ ..+..||..+.+-..
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~ 372 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE 372 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee
Confidence 3556666666432 5788998888776544433211 111122366777777754 346778877654321
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
......+ . .. .++ ..-+++..+.|+.+ ..+..||..+++-.. ...... ......
T Consensus 373 -~~~lp~~------r-~~-~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~-~~~~p~---------~r~~~~ 432 (534)
T PHA03098 373 -EPPLIFP------R-YN-PCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK-GSPLPI---------SHYGGC 432 (534)
T ss_pred -CCCcCcC------C-cc-ceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-cCCCCc---------cccCce
Confidence 1111100 0 11 112 22356777777632 457888887653211 100000 001111
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-----CcE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-----GDF 579 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i 579 (762)
+...+++.++.|+...... .+.-..+.+||..+.+-... .. .+.+......+.+ ++++++.|+.+ ..+
T Consensus 433 ~~~~~~~iyv~GG~~~~~~-~~~~~~v~~yd~~~~~W~~~-~~---~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v 505 (534)
T PHA03098 433 AIYHDGKIYVIGGISYIDN-IKVYNIVESYNPVTNKWTEL-SS---LNFPRINASLCIF--NNKIYVVGGDKYEYYINEI 505 (534)
T ss_pred EEEECCEEEEECCccCCCC-CcccceEEEecCCCCceeeC-CC---CCcccccceEEEE--CCEEEEEcCCcCCccccee
Confidence 2334566666665321000 00123488888877643221 11 0110111122222 67777777754 367
Q ss_pred EEEEcccc
Q 040987 580 KVWICNDE 587 (762)
Q Consensus 580 ~iwd~~~~ 587 (762)
.+||..+.
T Consensus 506 ~~yd~~~~ 513 (534)
T PHA03098 506 EVYDDKTN 513 (534)
T ss_pred EEEeCCCC
Confidence 78887654
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.52 Score=46.94 Aligned_cols=167 Identities=14% Similarity=0.172 Sum_probs=99.8
Q ss_pred eeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCc----CeE-EEEEcCCCcEEEEeecCCeE
Q 040987 231 TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTK----KLT-VLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~----~v~-~~~~sp~~~~l~~~~~dg~v 305 (762)
+......+..+-..|||+.|..-....+.++++.+.... .++......+ .|+ .+..-..|..|.+++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~---~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQ---IRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccc---hhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 444556788899999999998777789999998876543 1122222111 122 22223356678888899999
Q ss_pred EEE-eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 306 LIW-RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
.-| |+.....-. -..++.++-....+..+.-..+.+-+++-+..|++.++....
T Consensus 293 sQWFdvr~~~~p~-------------------------l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~ 347 (733)
T COG4590 293 SQWFDVRRDGQPH-------------------------LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTS 347 (733)
T ss_pred eeeeeeecCCCCc-------------------------ceeeeccccCcccceeeccccccceEEEEcCCCceeeeeccc
Confidence 888 332211000 001111111122232222222345577778888888887665
Q ss_pred CceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 385 GKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
.+.......-..+.-+++||++.++++- ..|.++++.+++.
T Consensus 348 ~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 348 EKLLLFERAYQAPQLVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred CcceehhhhhcCcceeeeCcccchheee-cCCceEEEEecCC
Confidence 5554444444467778999999998875 6678999888754
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=92.71 E-value=4.3 Score=43.47 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=49.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEE-ECCCCc
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVW-NMSKLS 684 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vw-d~~~~~ 684 (762)
|.+.|--+.....+..|..-. --.+.++|+.+.+....+. -.+-+.|.|-...|+.-+.|+ +++| +++-.+
T Consensus 336 h~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmiln----fcsymqwvp~sdvivaqn~dn---l~iwyn~d~pe 408 (1636)
T KOG3616|consen 336 HEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMILN----FCSYMQWVPGSDVIVAQNGDN---LCIWYNIDAPE 408 (1636)
T ss_pred ccccccceeccchhhhhhcccccceeEEEEcccchHHHHHH----HhhhheeccCcceEEecCCCc---eEEEecCCcch
Confidence 455555555555555555554 5667788887654332221 245688999888888888887 8888 666555
Q ss_pred eeeEEEEe
Q 040987 685 ISWSYLLH 692 (762)
Q Consensus 685 ~~~~~~~~ 692 (762)
.+-.+...
T Consensus 409 qvt~~kik 416 (1636)
T KOG3616|consen 409 QVTMFKIK 416 (1636)
T ss_pred hheeeEec
Confidence 55444443
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=92.64 E-value=5.2 Score=33.19 Aligned_cols=112 Identities=9% Similarity=0.041 Sum_probs=70.7
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC--------ceeEEEEEeecCCCCCceEEEEEcC-----CCCeEE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN--------KEFTLSTIVYEPHRDAGISAVAFHP-----NRRAAV 571 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~h~~~~v~~~~~sp-----d~~~l~ 571 (762)
.|......|+.++ ..++|.|++..... .+..+.. ...|++++-.+ +...|+
T Consensus 5 kfDG~~pcL~~aT---------~~gKV~IH~ph~~~~~~~~~~~~i~~LNi-------n~~italaaG~l~~~~~~D~Ll 68 (136)
T PF14781_consen 5 KFDGVHPCLACAT---------TGGKVFIHNPHERGQRTGRQDSDISFLNI-------NQEITALAAGRLKPDDGRDCLL 68 (136)
T ss_pred EeCCCceeEEEEe---------cCCEEEEECCCccccccccccCceeEEEC-------CCceEEEEEEecCCCCCcCEEE
Confidence 3444455666666 56788888766432 2222221 44677775544 345677
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC----CCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA----DGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~----dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.|+. ..+..||+.........+ -...+.++.+-. +..++++|++..|.-||.+..+..-+.
T Consensus 69 iGt~-t~llaYDV~~N~d~Fyke------------~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 69 IGTQ-TSLLAYDVENNSDLFYKE------------VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred Eecc-ceEEEEEcccCchhhhhh------------CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 7764 569999998776554332 346777777742 456777788999999998877665544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=92.62 E-value=8.4 Score=38.76 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=64.9
Q ss_pred ceEEEEEcCCCCeEEEEeCC------CcEEEEEcccccccccccC-Cceeeee---ecccCCCCeEEEEEcCCCcEEEEE
Q 040987 557 GISAVAFHPNRRAAVSSSYG------GDFKVWICNDELQQKDLQS-SGWSCHA---VGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 557 ~v~~~~~spd~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~~~---~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
...++++.++|.++++.-.+ ..|+.++.. +.....+.. ..+.... .....+....+|+++|||+.|.++
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 44578887888888877666 677777766 444333310 0110000 122356788999999999955543
Q ss_pred c------CC--e-------EEE--EeCCC-C----eEEEEecc-----ccCceeEEEEeCCCCEEEEE
Q 040987 627 A------ET--V-------ITL--WDPDR-N----VLVAVIGE-----TLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 627 ~------d~--~-------i~i--wd~~~-~----~~~~~l~~-----~~~~v~~~~~s~dg~~l~s~ 667 (762)
. |+ . ++| ||..+ + +....+.. ....+..+.+-+|+++|+--
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 2 32 1 444 55554 2 22223332 34568899999999977654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.58 E-value=5.4 Score=43.66 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=74.9
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecC------CcEEEEEcCCceEEEE
Q 040987 364 DGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCAD------NQVHLLKMPSMEIIRS 431 (762)
Q Consensus 364 ~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d------~~i~i~d~~~~~~~~~ 431 (762)
+++..+.||.+ ..+..||..+++.......+.+-.. .+..-+++..+.|+.+ +.+..||..+.+-..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~- 420 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK- 420 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeee-
Confidence 56677777754 3577889888776544333222111 1122356666666632 357888887654322
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
..... . ......+...+++..+.|+.+ ..+..||..+++-... ..... + ......
T Consensus 421 ~~~~p--~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-~~~~~---~----r~~~~~ 483 (534)
T PHA03098 421 GSPLP--I-------SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-SSLNF---P----RINASL 483 (534)
T ss_pred cCCCC--c-------cccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-CCCCc---c----cccceE
Confidence 11111 0 011112233456666777643 2378888876542211 00000 0 111111
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+ .-+++.++.|+.. .......+.+||..+.+
T Consensus 484 ~--~~~~~iyv~GG~~----~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 484 C--IFNNKIYVVGGDK----YEYYINEIEVYDDKTNT 514 (534)
T ss_pred E--EECCEEEEEcCCc----CCcccceeEEEeCCCCE
Confidence 2 2267777777531 00013578888877654
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=92.03 E-value=13 Score=36.45 Aligned_cols=206 Identities=15% Similarity=0.109 Sum_probs=106.9
Q ss_pred eeeEEEeCCCCEEEEeec------------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-----C
Q 040987 449 CRDIAFNHDGGLVALRAE------------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-----S 511 (762)
Q Consensus 449 v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-----~ 511 (762)
|..+...+++++.+.=+. .-.|..||+.+++.+.++........ ....+..+.+.... .
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~----~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAP----PDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-----TCGGEEEEEEECTTTTS-SE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcc----cccccceEEEEccCCCCcce
Confidence 456666666665443111 13788999999998887766543322 14567888887632 2
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC--------------CCCceEEEEEcC---CCCeEEEEe
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH--------------RDAGISAVAFHP---NRRAAVSSS 574 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h--------------~~~~v~~~~~sp---d~~~l~~~~ 574 (762)
++..++. ....|.++|+.+++..+.+.. ..... ....+..++.+| +++.|....
T Consensus 79 ~aYItD~--------~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ 149 (287)
T PF03022_consen 79 FAYITDS--------GGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHP 149 (287)
T ss_dssp EEEEEET--------TTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEE
T ss_pred EEEEeCC--------CcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEe
Confidence 4444432 446899999998765333221 00000 023466777766 777787776
Q ss_pred CCCcEEEEEcccccccccccCCce---eeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC------eEEEE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGW---SCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN------VLVAV 644 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~------~~~~~ 644 (762)
..+ -++|.+.+...........- ...............++++++|.+..+-- .+.|..|+..+. +.+..
T Consensus 150 lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 150 LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred CCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 544 34555544332221100000 00000111123556789999888777765 899999999862 22221
Q ss_pred eccccCceeEEEEeC--CCCEEEEEE
Q 040987 645 IGETLTPIMNMSFVG--SSEYLVATS 668 (762)
Q Consensus 645 l~~~~~~v~~~~~s~--dg~~l~s~~ 668 (762)
-...-.....+.+.+ +|.+.+.+.
T Consensus 229 d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 229 DPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp -CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred cCceeeccceeeeccccCceEEEEEC
Confidence 111124578889988 777666653
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.94 E-value=7.3 Score=41.75 Aligned_cols=148 Identities=9% Similarity=0.067 Sum_probs=73.8
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---cEEEEEc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---DFKVWIC 584 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---~i~iwd~ 584 (762)
-+++..+.|+.+ ....+..||..+++-.. +.. -+.+......+ .-+|+..+.|+.++ .+..||.
T Consensus 317 ~~~~iYviGG~~-------~~~sve~ydp~~n~W~~-~~~---l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp 383 (480)
T PHA02790 317 ANNKLYVVGGLP-------NPTSVERWFHGDAAWVN-MPS---LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLP 383 (480)
T ss_pred ECCEEEEECCcC-------CCCceEEEECCCCeEEE-CCC---CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeC
Confidence 467777777632 22457788876543211 111 11101111222 23677888887653 4667777
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEE--EEeccccCceeEEEEeCCCC
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLV--AVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~--~~l~~~~~~v~~~~~s~dg~ 662 (762)
.+.. |............. .+..-+|++.+.| |.+.+||.++++-. ..+.........+ .-+|+
T Consensus 384 ~~~~---------W~~~~~m~~~r~~~--~~~~~~~~IYv~G--G~~e~ydp~~~~W~~~~~m~~~r~~~~~~--v~~~~ 448 (480)
T PHA02790 384 NHDQ---------WQFGPSTYYPHYKS--CALVFGRRLFLVG--RNAEFYCESSNTWTLIDDPIYPRDNPELI--IVDNK 448 (480)
T ss_pred CCCE---------EEeCCCCCCccccc--eEEEECCEEEEEC--CceEEecCCCCcEeEcCCCCCCccccEEE--EECCE
Confidence 6543 33222221111121 2223467777776 35678888877543 2332222222222 23678
Q ss_pred EEEEEEcCCC---CeEEEEECCCC
Q 040987 663 YLVATSWGSK---PQLSVWNMSKL 683 (762)
Q Consensus 663 ~l~s~~~d~~---~~v~vwd~~~~ 683 (762)
..+.||.++. ..+..||..++
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCC
Confidence 8888876532 23777777654
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.15 Score=55.10 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=57.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCC-CCEEEEEeCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEE
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS-GKYFGIRKQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLA 288 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spd-g~~la~~~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~ 288 (762)
..+.+++-|..+....+....+..+.+..++|..- -..++ -.-|.+.||+++ .|+...+...+........+.-+.
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~-~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR-RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH-HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 44556666655544333556666777777777421 11111 223677888876 344433333344444444555555
Q ss_pred EcC---CCcEEEEeecCCeEEEEeccC
Q 040987 289 FHP---TQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 289 ~sp---~~~~l~~~~~dg~v~vw~~~~ 312 (762)
|.| +.-++..+..++.+++.+...
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~r 214 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINR 214 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeech
Confidence 555 666777888888888887643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.94 Score=28.84 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCC
Q 040987 609 KAMTAAAFSADG---SVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 609 ~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~ 638 (762)
+.+.++.|||+. .+|+.+. -+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 357899999854 4888887 79999999995
|
It contains a characteristic DLL sequence motif. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.62 E-value=8.7 Score=39.42 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=46.4
Q ss_pred CCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 619 DGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 619 dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
...++|+++ .|.|++||--.-+....+.+-...|..+..+.+|+++++.+..- +.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~y---llL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKNY---LLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecce---EEEEecc
Confidence 445888888 89999999775555556666777899999999999988877654 6666654
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=91.60 E-value=30 Score=39.68 Aligned_cols=172 Identities=12% Similarity=0.026 Sum_probs=100.8
Q ss_pred CCCCCeEEEEeC---C----CCCeEEEEecCCcEEEEEcCCc---------------eEEEEEccCCCCCCCCCcccCce
Q 040987 392 RIGSPLLYFTES---P----DPSLSSISCADNQVHLLKMPSM---------------EIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 392 ~~~~~v~~~~~s---~----~~~~l~~~~~d~~i~i~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
....+|..++|+ . ..++|++- ....+.|+...-. .++..+..+. ......
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~-------tgg~~~ 148 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSD-------TGGFPH 148 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhh-------cCCCcc
Confidence 566789999987 2 22355544 5567777772211 1222232211 122466
Q ss_pred eeEEEeC-CCCEEEEeecCceEEEEEcCCCCce--eeEEee--ccccc-CCCCcceeEEEEEEecCCCeEEEEeeecccc
Q 040987 450 RDIAFNH-DGGLVALRAENYCIHFYSLLDDRGI--SEVQVC--ERNHQ-PGDDVTVVVTLVALSQDGSLMSTVDIKLAEE 523 (762)
Q Consensus 450 ~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~--~~~~~-~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~ 523 (762)
.+++|+| +.+.+|+....|...+|++...... ..+... ..+.. ........-..+.|.++...|++++
T Consensus 149 aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~------ 222 (765)
T PF10214_consen 149 ADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN------ 222 (765)
T ss_pred ceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc------
Confidence 7899998 4568999999999999999222111 111111 11111 1111123456888999988888884
Q ss_pred CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC--CCeEEEEeCCCcEEEEEcccc
Q 040987 524 GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN--RRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 524 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd--~~~l~~~~~dg~i~iwd~~~~ 587 (762)
...+.++|+++......+. .... ...|..+.-+|+ +..++.. ...|...++...
T Consensus 223 ----r~~l~~~d~~~~~~~~~l~---~~~~-~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~ 278 (765)
T PF10214_consen 223 ----RSKLMLIDFESNWQTEYLV---TAKT-WSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS 278 (765)
T ss_pred ----CCceEEEECCCCCccchhc---cCCC-hhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence 4689999999876533221 1223 568899998887 3333332 356777777763
|
These proteins are found in fungi. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.76 Score=29.22 Aligned_cols=35 Identities=14% Similarity=0.008 Sum_probs=26.1
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
++|.++.|||+. ....+|+-+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~----~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEP----GGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCC----CcccEEEEEccCCeEEEEEcccC
Confidence 468999999865 11136667777799999999853
|
It contains a characteristic DLL sequence motif. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.58 E-value=5.3 Score=43.72 Aligned_cols=75 Identities=11% Similarity=0.242 Sum_probs=51.1
Q ss_pred cCCCceEEEEC--CCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC---c---EEEEeecCCe
Q 040987 234 EMKEPQVITIS--SSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ---R---IVAAGDVTGR 304 (762)
Q Consensus 234 ~~~~v~~~~~s--pdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~---~l~~~~~dg~ 304 (762)
.....+.+++. ...++||++ ....|.||-....... ........|...|-+++|-++. . +|++++-.|.
T Consensus 162 v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r--~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~ 239 (717)
T PF08728_consen 162 VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER--FYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGE 239 (717)
T ss_pred cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc--cccccccccccCCCeeEeecCCCCCccceEEEEEeccCc
Confidence 34577899998 888899876 4566777755442111 0011122467789999998744 2 7888899999
Q ss_pred EEEEec
Q 040987 305 ILIWRG 310 (762)
Q Consensus 305 v~vw~~ 310 (762)
+.+|++
T Consensus 240 v~~~~I 245 (717)
T PF08728_consen 240 VWTFKI 245 (717)
T ss_pred EEEEEE
Confidence 999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.7 Score=43.57 Aligned_cols=165 Identities=15% Similarity=0.037 Sum_probs=94.5
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCC-CC----CeE-EEEeCCCCCeEEEEecCC
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRI-GS----PLL-YFTESPDPSLSSISCADN 416 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~-~~----~v~-~~~~s~~~~~l~~~~~d~ 416 (762)
.+..+......+..+-..|||+.++.-+. .++.++++.+..... +... ++ .|+ .+..-..|..+++...||
T Consensus 212 ~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 212 IIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred hhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 33445555667888889999999887765 678888887655421 1111 11 111 111233566778888888
Q ss_pred cEEEE-EcCCc-e----EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 417 QVHLL-KMPSM-E----IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 417 ~i~i~-d~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
-|.-| |.+.+ . .++.++-.. ..+..+.-..+.+-++.-+.+|++..+.....+.+..-..
T Consensus 291 ~vsQWFdvr~~~~p~l~h~R~f~l~p----------a~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~---- 356 (733)
T COG4590 291 LVSQWFDVRRDGQPHLNHIRNFKLAP----------AEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA---- 356 (733)
T ss_pred ceeeeeeeecCCCCcceeeeccccCc----------ccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----
Confidence 88776 33321 1 111111110 1222222222334466667778888776554433221111
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
...+..+++||.+.++++- +.+.++++.+++...
T Consensus 357 -------~~~~~~~~~Sp~~~~Ll~e----------~~gki~~~~l~Nr~P 390 (733)
T COG4590 357 -------YQAPQLVAMSPNQAYLLSE----------DQGKIRLAQLENRNP 390 (733)
T ss_pred -------hcCcceeeeCcccchheee----------cCCceEEEEecCCCC
Confidence 2346778999999999887 457899998886543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=91.29 E-value=21 Score=38.53 Aligned_cols=87 Identities=7% Similarity=0.122 Sum_probs=57.8
Q ss_pred EecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 380 WQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 380 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.|+-.|+......|.+.|--+.++..+..|+.-...-.+.++|+.+.+....+ +.+.-+.|-|...
T Consensus 323 vdli~g~~~~~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil--------------nfcsymqwvp~sd 388 (1636)
T KOG3616|consen 323 VDLIGGQNEGFINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL--------------NFCSYMQWVPGSD 388 (1636)
T ss_pred eecccCcccccccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH--------------HHhhhheeccCcc
Confidence 56666776777788888888888888877777666667888888753322111 2345678888877
Q ss_pred EEEEeecCceEEEE-EcCCCCce
Q 040987 460 LVALRAENYCIHFY-SLLDDRGI 481 (762)
Q Consensus 460 ~l~~~~~dg~i~i~-d~~~~~~~ 481 (762)
.++.-+.|+ +.+| ++...+.+
T Consensus 389 vivaqn~dn-l~iwyn~d~peqv 410 (1636)
T KOG3616|consen 389 VIVAQNGDN-LCIWYNIDAPEQV 410 (1636)
T ss_pred eEEecCCCc-eEEEecCCcchhh
Confidence 777666665 6665 44444433
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=13 Score=39.84 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=52.8
Q ss_pred CCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 364 DGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 364 ~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
+|+..+.||.+ ..+..||.++.+.........+... .+..-+++..+.| |.+.+||..+.+-.. +.....+
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ydp~~~~W~~-~~~m~~~- 436 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEFYCESSNTWTL-IDDPIYP- 436 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEEC---CceEEecCCCCcEeE-cCCCCCC-
Confidence 66666777654 3477899888877654443322211 1223455555555 456788887643321 1111100
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
.... +++ .-+++..++|+.+ ..+..||..++
T Consensus 437 ------r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 ------RDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ------cccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC
Confidence 0111 222 2356777777754 34666666544
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=91.22 E-value=1.4 Score=41.12 Aligned_cols=78 Identities=13% Similarity=0.149 Sum_probs=56.9
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-------cCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-------YKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+..++.+|++.+.+|.+++||+.+++...... ....... .....|..+.++.+|.-|++-++|..+.|+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 44568899999999999999999887654431 0111111 356788999999999988887888899998
Q ss_pred CCCCeEEEE
Q 040987 636 PDRNVLVAV 644 (762)
Q Consensus 636 ~~~~~~~~~ 644 (762)
.+-+.-+..
T Consensus 94 ~~L~~W~~v 102 (219)
T PF07569_consen 94 PDLGCWIRV 102 (219)
T ss_pred cccceeEEe
Confidence 876655443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=91.04 E-value=9.6 Score=37.39 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=91.0
Q ss_pred eEEEEecCCCceeccC-------CCCCCeEEEEeCCCC-----CeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCC-
Q 040987 376 VLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDP-----SLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPL- 441 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~-----~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~- 441 (762)
.|.+||+.+++..... ...+.+..+.+.... .+++.+.. .+.+.|+|+.+++..+.+..+..+...
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 5777888887763221 123456677765522 23444433 358999999999888877664332210
Q ss_pred --------CCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCC-----CCceeeEEeecccccCCCCcceeEEEEE
Q 040987 442 --------PEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLD-----DRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 442 --------~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
.......+..++.+| ++++|....-.+ -++|.+.+ ....... ..................++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~-~~~~~v~~lG~k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQ-ALASQVQDLGDKGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH--HHHT-EEEEE---SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccc-cccccceeccccCCCCceEE
Confidence 000112355556555 555555544322 12222211 1100000 00000000000012456788
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC--CCCeEEEEe
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP--NRRAAVSSS 574 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp--d~~~l~~~~ 574 (762)
++++|.++.+-- ..+.|..|+..+.-....+.........-....++.+.+ +|.+.+.+.
T Consensus 193 ~D~~G~ly~~~~---------~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 193 IDPNGNLYFTDV---------EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EETTTEEEEEEC---------CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred ECCCCcEEEecC---------CCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899888887776 778999999887332222222211222134678888888 776666553
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.04 E-value=6.9 Score=43.70 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=55.4
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC----------CCeE--EEE-e--------ccccCceeEEEEeCC---CC
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDPD----------RNVL--VAV-I--------GETLTPIMNMSFVGS---SE 662 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~----------~~~~--~~~-l--------~~~~~~v~~~~~s~d---g~ 662 (762)
..-.|..+.++|+|++||..+...|.|-.+- .|+. .+. + ..+...|..+.|+|. +.
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3468899999999999999885555554442 1211 111 1 123345899999995 58
Q ss_pred EEEEEEcCCCCeEEEEECCCCceee
Q 040987 663 YLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 663 ~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
.|+.-..|+. +++||+......+
T Consensus 163 ~l~vLtsdn~--lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 163 HLVVLTSDNT--LRLYDISDPQHPW 185 (717)
T ss_pred eEEEEecCCE--EEEEecCCCCCCe
Confidence 9999999998 9999998755433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=90.79 E-value=1.1 Score=28.45 Aligned_cols=30 Identities=37% Similarity=0.422 Sum_probs=24.9
Q ss_pred cCCCEEEEEe--CCEEEEEEcccceEEeeecC
Q 040987 83 NDVKRLLVCT--SNTVSIFSTSTGLQISSLEG 112 (762)
Q Consensus 83 ~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~ 112 (762)
||+++|.++. ++.|.++|..+++.+.++.-
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 6788877776 49999999999998887765
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.60 E-value=8.9 Score=31.86 Aligned_cols=124 Identities=12% Similarity=0.146 Sum_probs=77.2
Q ss_pred EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec--
Q 040987 286 VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-- 363 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-- 363 (762)
.-.|......|+.++..|+|.|++.......... ....+..+ .-...|++++-.+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~----------------------~~~~i~~L-Nin~~italaaG~l~ 59 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR----------------------QDSDISFL-NINQEITALAAGRLK 59 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc----------------------ccCceeEE-ECCCceEEEEEEecC
Confidence 3456666678899999999999987554322110 00112222 2345566664432
Q ss_pred ---CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 364 ---DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP---DPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 364 ---~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+...|+.|+. ..+..||++.....+.......+.++.+-. ...-++..+.+-.|.-||....+...+..
T Consensus 60 ~~~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 60 PDDGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CCCCcCEEEEecc-ceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 2345666654 689999999999888888888888887732 22334444456677777777666555543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=24 Score=36.49 Aligned_cols=150 Identities=10% Similarity=0.107 Sum_probs=82.8
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
....+..++||.+++.+. ....++-||-. ...+.... .+. ...+.++.+.+++..++++ .+|.+
T Consensus 240 sf~~v~~~~dG~~~~vg~---------~G~~~~s~d~G--~~~W~~~~---~~~-~~~l~~v~~~~dg~l~l~g-~~G~l 303 (398)
T PLN00033 240 TFSTVNRSPDGDYVAVSS---------RGNFYLTWEPG--QPYWQPHN---RAS-ARRIQNMGWRADGGLWLLT-RGGGL 303 (398)
T ss_pred ceeeEEEcCCCCEEEEEC---------CccEEEecCCC--CcceEEec---CCC-ccceeeeeEcCCCCEEEEe-CCceE
Confidence 345567788998888885 22222233322 11111110 222 5578899999999887766 45654
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe---ccccCceeEEE
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI---GETLTPIMNMS 656 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l---~~~~~~v~~~~ 656 (762)
++....+..-... .|.... .......++++.|.+++..+++|..|.+.... +.|+--... ..-..+.+.+.
T Consensus 304 -~~S~d~G~~~~~~---~f~~~~-~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~ 377 (398)
T PLN00033 304 -YVSKGTGLTEEDF---DFEEAD-IKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVK 377 (398)
T ss_pred -EEecCCCCccccc---ceeecc-cCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEE
Confidence 3333333211000 000000 00123458899999999999999888776664 334332222 22345688999
Q ss_pred EeCCCCEEEEEEcCCC
Q 040987 657 FVGSSEYLVATSWGSK 672 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~ 672 (762)
|.++++.++++ .+|.
T Consensus 378 f~~~~~g~~~G-~~G~ 392 (398)
T PLN00033 378 FFDDKKGFVLG-NDGV 392 (398)
T ss_pred EcCCCceEEEe-CCcE
Confidence 98876655554 5554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.38 E-value=14 Score=40.65 Aligned_cols=125 Identities=10% Similarity=0.072 Sum_probs=72.1
Q ss_pred ceeeEEEeC--CCCEEEEeecCceEEEEEcCCCC-----ceeeEEe-ec-ccccC--CCCcceeEEEEEEe--cCCCeEE
Q 040987 448 LCRDIAFNH--DGGLVALRAENYCIHFYSLLDDR-----GISEVQV-CE-RNHQP--GDDVTVVVTLVALS--QDGSLMS 514 (762)
Q Consensus 448 ~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~-~~-~~~~~--~~~~~~~v~~~~~s--p~g~~l~ 514 (762)
.|..+.... +...|+++.+||.|.+|.+++-- ....... .. ....| .......+..++++ ...++||
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEE
Confidence 344443333 45678999999999999763210 0000000 00 00000 00114568889998 8888999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---C---eEEEEeCCCcEEEEEc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---R---AAVSSSYGGDFKVWIC 584 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~---~l~~~~~dg~i~iwd~ 584 (762)
+++ ....|.||-............. ..+ ...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 182 VSs---------Ns~~VTVFaf~l~~~r~~~~~s--~~~-~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 182 VSS---------NSQEVTVFAFALVDERFYHVPS--HQH-SHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred Eec---------CCceEEEEEEeccccccccccc--ccc-ccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 998 5667777665542211111100 123 4588899997753 2 7788888999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.05 E-value=6.9 Score=40.10 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=85.4
Q ss_pred EeCCCCEEEE-eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC--------CeEEEEeeeccccC
Q 040987 454 FNHDGGLVAL-RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG--------SLMSTVDIKLAEEG 524 (762)
Q Consensus 454 ~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g--------~~l~~~~~~~~~~~ 524 (762)
...|..+|.. +.....++-.|+..|+.+.+.... ..+ -+.|.|+. +.|+-.+
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~-----------ddv-vVqy~p~~kf~qmt~eqtlvGlS------- 535 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLK-----------DDV-VVQYNPYFKFQQMTDEQTLVGLS------- 535 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecC-----------Ccc-eeecCCchhHHhcCccceEEeec-------
Confidence 3444444443 445567888888888887776653 223 55666643 2333332
Q ss_pred CCceeEEEEEEecCCC-ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 525 IGSLVCLKFWVSGTQN-KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~-~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
+..|.-.|.+-.. .+.......+.+ .....+..-. ...++|.++..|.|++||--.......+
T Consensus 536 ---~~svFrIDPR~~gNKi~v~esKdY~t--Kn~Fss~~tT-esGyIa~as~kGDirLyDRig~rAKtal---------- 599 (776)
T COG5167 536 ---DYSVFRIDPRARGNKIKVVESKDYKT--KNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKRAKTAL---------- 599 (776)
T ss_pred ---ccceEEecccccCCceeeeeehhccc--cccccccccc-cCceEEEecCCCceeeehhhcchhhhcC----------
Confidence 2334333443222 222111101111 1222222222 3458999999999999997654444333
Q ss_pred cccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 604 GSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 604 ~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
++-...|..+..+.+|+++.+.....+.+-|+.
T Consensus 600 -P~lG~aIk~idvta~Gk~ilaTCk~yllL~d~~ 632 (776)
T COG5167 600 -PGLGDAIKHIDVTANGKHILATCKNYLLLTDVP 632 (776)
T ss_pred -cccccceeeeEeecCCcEEEEeecceEEEEecc
Confidence 245788999999999999888777788888764
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.58 E-value=3 Score=38.88 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=48.3
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceeccC---------------CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP---------------RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+..++++|++.+.+|.+++||+.+++..... .....|..+.++.+|.-+++- .+|..+.|+.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l-sng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL-SNGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE-eCCCEEEecccc
Confidence 4457889999999999999999998763211 244577888888888777665 457788888764
Q ss_pred c
Q 040987 426 M 426 (762)
Q Consensus 426 ~ 426 (762)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.9 Score=27.41 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=28.4
Q ss_pred CCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 618 ADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 618 ~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
|+++.|.++. +++|.++|..+++.+..+.... .-..++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~-~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG-YPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC-CCceEEe
Confidence 6788887775 7999999999998888776532 2334444
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.99 E-value=28 Score=35.29 Aligned_cols=211 Identities=13% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE----eCCCCE--EEEeecC----ceEEEE
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF----NHDGGL--VALRAEN----YCIHFY 473 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~--l~~~~~d----g~i~i~ 473 (762)
|...+++....++.+.+||+. |+.++.+.. +.+..+.. .-+|+. |++++.. ..|++|
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~------------Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f 132 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV------------GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLF 132 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S------------S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEE
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC------------CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEE
Confidence 445567777778899999998 556666542 22333222 113443 4555432 579999
Q ss_pred EcCCCC-ceeeEEeecccccCCCCcceeEEEEEE--ec-CCCeEEEEeeeccccCCCceeEEEEEEecC---CCceeEEE
Q 040987 474 SLLDDR-GISEVQVCERNHQPGDDVTVVVTLVAL--SQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGT---QNKEFTLS 546 (762)
Q Consensus 474 d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~ 546 (762)
.+.... .+..+.... + +.......+..+++ +| +|++.+.... .+|.+..|.+.. +....++.
T Consensus 133 ~id~~~g~L~~v~~~~--~-p~~~~~~e~yGlcly~~~~~g~~ya~v~~--------k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 133 RIDPDTGELTDVTDPA--A-PIATDLSEPYGLCLYRSPSTGALYAFVNG--------KDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp EEETTTTEEEE-CBTT--C--EE-SSSSEEEEEEEE-TTT--EEEEEEE--------TTSEEEEEEEEE-TTSSEEEEEE
T ss_pred EecCCCCcceEcCCCC--c-ccccccccceeeEEeecCCCCcEEEEEec--------CCceEEEEEEEeCCCCcEeeEEE
Confidence 876422 222211100 0 00000223566666 43 4665555542 667788887753 22211111
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc--CCC-cEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS--ADG-SVL 623 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg-~~l 623 (762)
. .+.. ...+..++......+|+.+-++.-|+-|+.+........ .............|..|++- ++| .||
T Consensus 202 R-~f~~--~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~----~v~~~~g~~l~aDvEGlaly~~~~g~gYL 274 (381)
T PF02333_consen 202 R-EFKV--GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRT----LVASADGDGLVADVEGLALYYGSDGKGYL 274 (381)
T ss_dssp E-EEE---SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--E----EEEEBSSSSB-S-EEEEEEEE-CCC-EEE
T ss_pred E-EecC--CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcce----eeecccccccccCccceEEEecCCCCeEE
Confidence 1 1111 447888889888889999988877777776532211100 00001122335677777774 344 366
Q ss_pred EEEc--CCeEEEEeCCCC-eEEEEe
Q 040987 624 AVAA--ETVITLWDPDRN-VLVAVI 645 (762)
Q Consensus 624 a~~~--d~~i~iwd~~~~-~~~~~l 645 (762)
++++ +++..||+.+.. ..+..+
T Consensus 275 ivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 275 IVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEEcCCCCeEEEEecCCCCcccceE
Confidence 6665 899999998853 444433
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.68 Score=50.37 Aligned_cols=113 Identities=14% Similarity=0.135 Sum_probs=76.4
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCcee-----------ecCCCEEEEEe-CCEEEEEEc-----ccc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAF-----------SNDVKRLLVCT-SNTVSIFST-----STG 104 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~-----------s~dg~~la~~~-~~~i~iwd~-----~~~ 104 (762)
...++..+..+|.|++.+...-.+..+++|..+++. ++| ||||+.+|.+. ||.+..|-+ ..-
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d-~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~ 272 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTD-MAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH 272 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHHHHHHhcCCCccc-HHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence 356888888999999999888777888889988886 665 89999999988 776666654 334
Q ss_pred eEEeeecCCc-cceeEEEEeCCCCcc---cceeeeEEeee-cCCeEEEEeCCCcceE
Q 040987 105 LQISSLEGHK-APVTTVIVVPASTPA---TKILSYCWTAS-LDGTIKYWDFSVPELL 156 (762)
Q Consensus 105 ~~~~~l~~h~-~~V~~v~~s~~~~~~---~~l~~~l~s~s-~d~~i~vWd~~~~~~~ 156 (762)
++++..+.|+ .+-.|.-|......- ++- .++++++ ....+++|.-..-+|+
T Consensus 273 rclhewkphd~~p~vC~lc~~~~~~~v~i~~w-~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 273 RCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW-VLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred hhhhccCCCCCCCceeeeeccccccCCcccee-EEEEecccCCcceeEeeccchhhh
Confidence 4666667777 333333344432100 011 2344444 3567999998877776
|
|
| >PRK13615 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=40 Score=36.44 Aligned_cols=161 Identities=11% Similarity=-0.083 Sum_probs=89.2
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
.+++.++++..++....++.+.++... +.....+.+ ..+..-.|.+++ .+-+.-.....++.....
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~------------~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~ 402 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGD-RDAVLLDTR------------PGLVAPSLDAQG-YVWSTPASDPRGLVAWGP 402 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCC-CcceeeccC------------CccccCcCcCCC-CEEEEeCCCceEEEEecC
Confidence 678999999999888777767766554 222222222 234566777776 444433333344444332
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEE-EE-EeecCCC
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTL-ST-IVYEPHR 554 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~-~~-~~~~~h~ 554 (762)
............ ....|..+..|+||-.++..... ++.++|.+--+.. +.....+ .. ......
T Consensus 403 ~G~~~~v~v~~~-------~~~~I~~lrvSrDG~R~Avi~~~------~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~- 468 (557)
T PRK13615 403 DGVGHPVAVSWT-------ATGRVVSLEVARDGARVLVQLET------GAGPQLLVASIVRDGGVPTSLTTTPLELLAS- 468 (557)
T ss_pred CCceEEeecccc-------CCCeeEEEEeCCCccEEEEEEec------CCCCEEEEEEEEeCCCcceEeeeccEEcccC-
Confidence 112222221111 14579999999999988876410 1335566643332 3323333 21 112222
Q ss_pred CCceEEEEEcCCCCeEEEEe---CCCcEEEEEccc
Q 040987 555 DAGISAVAFHPNRRAAVSSS---YGGDFKVWICND 586 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~ 586 (762)
...+.++.|..++.+++.+. .+..+++..+..
T Consensus 469 l~~v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g 503 (557)
T PRK13615 469 PGTPLDATWVDELDVATLTLAPDGERQVELHQVGG 503 (557)
T ss_pred cCcceeeEEcCCCEEEEEeccCCCCceEEEEECCC
Confidence 44889999999998766653 234566666653
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=88.20 E-value=2.4 Score=37.90 Aligned_cols=36 Identities=8% Similarity=0.030 Sum_probs=26.1
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
.|.+++|||.|=. ..---+|+....++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7999999996510 00014688889999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats | Back alignment and domain information |
|---|
Probab=88.05 E-value=42 Score=36.18 Aligned_cols=187 Identities=13% Similarity=0.079 Sum_probs=110.8
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+.|.++| .+.+.+..+..... ...|.++.|--|--+++|-- .---+.+.|+...+.+..+..
T Consensus 304 N~lyVLD-~~L~~vG~l~~la~--------gE~IysvRF~Gd~~Y~VTFr---------qvDPLfviDLsdP~~P~vlGe 365 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGLAP--------GERIYSVRFMGDRAYLVTFR---------QVDPLFVIDLSDPANPKVLGE 365 (521)
T ss_pred EEEEEEC-CCCcEeEEccccCC--------CceEEEEEEeCCeEEEEEEe---------ecCceEEEECCCCCCCceeeE
Confidence 5677777 55555555543332 56799999998888888875 334688899988887777665
Q ss_pred EeecCCCCCceEEEEEcC--CCCeEEEEeCCC-----------cEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 548 IVYEPHRDAGISAVAFHP--NRRAAVSSSYGG-----------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~sp--d~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
+...|. ..- ++| ++.+|-.|-... .|.+||+......................-...-.++
T Consensus 366 LKIPGf-S~Y-----LHP~~e~~LlGiG~~~~~~~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAf 439 (521)
T PF09826_consen 366 LKIPGF-SDY-----LHPYDENHLLGIGKDTDEDEGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAF 439 (521)
T ss_pred EECccc-hhc-----eeECCCCeEEEEcccCcccccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEE
Confidence 544444 222 334 334444443221 3678999876654443200000000000111223478
Q ss_pred EEcCCCcEEEEEc--------CCeEEEEeCC--CC-eEEEEeccccC------ceeEEEEeCCCCEEEEEEcCCCCeEEE
Q 040987 615 AFSADGSVLAVAA--------ETVITLWDPD--RN-VLVAVIGETLT------PIMNMSFVGSSEYLVATSWGSKPQLSV 677 (762)
Q Consensus 615 ~~s~dg~~la~~~--------d~~i~iwd~~--~~-~~~~~l~~~~~------~v~~~~~s~dg~~l~s~~~d~~~~v~v 677 (762)
.|.++.++|+.-- -..+.|+++. .| +....+..... .+....+..| .|.+.+.++ |++
T Consensus 440 l~~~~~~ll~~Pv~~~~~~~~~~g~~v~~i~~~~g~~~~g~i~h~~~~~~~~~~~~R~lyi~d--~lYtvS~~~---i~~ 514 (521)
T PF09826_consen 440 LFDKEKNLLAFPVSSSYGYFNFQGAYVFSIDPEDGFTLKGKITHPSPDYYYSYQIQRSLYIGD--TLYTVSDNG---IKA 514 (521)
T ss_pred EEeCCCCEEEEEEEEccCccccceEEEEEEeCCCCeEEEEEEEccCcccccccceeEEEEECC--EEEEEECCE---EEE
Confidence 8888888877532 2567788777 33 45555553332 2666667654 788888777 999
Q ss_pred EECCCC
Q 040987 678 WNMSKL 683 (762)
Q Consensus 678 wd~~~~ 683 (762)
+|+++.
T Consensus 515 ~~l~t~ 520 (521)
T PF09826_consen 515 YDLNTL 520 (521)
T ss_pred EehHhc
Confidence 998875
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.74 E-value=37 Score=35.19 Aligned_cols=59 Identities=8% Similarity=0.205 Sum_probs=44.2
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
..++.+-+.||.+.+|+-+.....+.+.+.. -...++|.+....+++++.+..+..|..
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~l-----------lPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFL-----------LPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCCCC-----------CCcCeEEeecCCEEEEecCceeEEEecH
Confidence 3577888899999999988655455554422 2245788888888999998888888865
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.54 E-value=19 Score=34.02 Aligned_cols=152 Identities=13% Similarity=0.135 Sum_probs=79.4
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceeeEEeecccccCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
-.+||+.+++... +.-.. +-.+.+-++.+||++|.+|+.. ..+++++.................
T Consensus 48 s~~yD~~tn~~rp-l~v~t---------d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m--- 114 (243)
T PF07250_consen 48 SVEYDPNTNTFRP-LTVQT---------DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM--- 114 (243)
T ss_pred EEEEecCCCcEEe-ccCCC---------CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc---
Confidence 4578888765432 22211 1344556788999999988743 357788765411111111000000
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEee--cCCCCCceEEEEEcCCCCeEE
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVY--EPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~--~~h~~~~v~~~~~spd~~~l~ 571 (762)
.....-..+..-|||+.|+.|+. ...+..+|..... .....+..... ......----+...|||++++
T Consensus 115 -~~~RWYpT~~~L~DG~vlIvGG~--------~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi 185 (243)
T PF07250_consen 115 -QSGRWYPTATTLPDGRVLIVGGS--------NNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFI 185 (243)
T ss_pred -cCCCccccceECCCCCEEEEeCc--------CCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEE
Confidence 00334445566789999999974 2334455554221 11111110000 000011223467789999999
Q ss_pred EEeCCCcEEEEEcccccccccc
Q 040987 572 SSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.+..+ -.|||..+.+.+..+
T Consensus 186 ~an~~--s~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 186 FANRG--SIIYDYKTNTVVRTL 205 (243)
T ss_pred EEcCC--cEEEeCCCCeEEeeC
Confidence 88764 457798887665544
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.34 E-value=42 Score=35.42 Aligned_cols=112 Identities=10% Similarity=0.128 Sum_probs=61.5
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVIT 632 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~ 632 (762)
...|+.+++..+|+.- .++...-+..|+.++ +...... .......|..+.=.|+++ |..|+ +|-++
T Consensus 375 g~nit~~~~d~~g~lW-lgs~q~GLsrl~n~n~~avlde~----------agl~ss~V~aived~dns-LWIGTs~Glvk 442 (671)
T COG3292 375 GMNITTTLEDSRGRLW-LGSMQNGLSRLDNKNEWAVLDED----------AGLPSSEVSAIVEDPDNS-LWIGTSGGLVK 442 (671)
T ss_pred ccccchhhhccCCcEE-EEecccchhhhccCCcccccccc----------cCCcccceeeeeecCCCC-EEEeccCCeEe
Confidence 4466667776655544 344443355566554 2111111 122356788888888988 55666 66544
Q ss_pred EEeCCCCeEEEEec--cc---cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 633 LWDPDRNVLVAVIG--ET---LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 633 iwd~~~~~~~~~l~--~~---~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
. +.+.++....+. .| .+.+..+.+-|+|+.-+.+ .+| |..|+....
T Consensus 443 ~-~pe~~~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~-g~g---va~~~sq~~ 493 (671)
T COG3292 443 R-DPESGRVLNLLNPGSHGLDGSRVEQLGLGPDGRLWLAA-GSG---VAAWESQRR 493 (671)
T ss_pred c-CccccchhcccccccCcCCcchhhhhccCCCCceEEEe-cce---eeeeccccc
Confidence 3 555544333322 12 2337788899998754433 355 777765543
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=87.26 E-value=11 Score=35.58 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=79.6
Q ss_pred EEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecC---CcEEEEEcCC---ceEEEEEccCCCCCCCCCcccCce
Q 040987 377 LVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCAD---NQVHLLKMPS---MEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d---~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
-.+||+.+++...+.-.. .-...-.+-+||+++.+|+.. ..+++++..+ .......... . ....+-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~---m----~~~RWY 120 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND---M----QSGRWY 120 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc---c----cCCCcc
Confidence 457888888775443222 223334577899999988752 3577777543 1111110000 0 011344
Q ss_pred eeEEEeCCCCEEEEeecCc-eEEEEEcCCC-CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 450 RDIAFNHDGGLVALRAENY-CIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
.....-|||+.|+.|+... ...+|..... .....+........ .....--..+-..|||+.++.+. .
T Consensus 121 pT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~--~~~~nlYP~~~llPdG~lFi~an---------~ 189 (243)
T PF07250_consen 121 PTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSD--TLPNNLYPFVHLLPDGNLFIFAN---------R 189 (243)
T ss_pred ccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhc--cCccccCceEEEcCCCCEEEEEc---------C
Confidence 5667788999999998774 3444443221 11112111111000 00012223566789999999886 2
Q ss_pred eeEEEEEEecCCCceeEEE
Q 040987 528 LVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~ 546 (762)
.-.|||..+.+.+..+.
T Consensus 190 --~s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 190 --GSIIYDYKTNTVVRTLP 206 (243)
T ss_pred --CcEEEeCCCCeEEeeCC
Confidence 45677888776555543
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.01 E-value=7.8 Score=44.84 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEcc----Cchhh----------------hheeeeeeeccCcCeEEEEEcCCCc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVP----DVEAE----------------RVVMRKITLHHTKKLTVLAFHPTQR 294 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~----~~~~~----------------~~~~~~~~~~~~~~v~~~~~sp~~~ 294 (762)
...|.++....+|+.+.+|.|| .+|.+. .+-.. ...+.++...+.++|..++....-+
T Consensus 178 g~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 4467888888999999998888 444432 11000 0001122235678999999988888
Q ss_pred EEEEeecCCeEEEEeccCC
Q 040987 295 IVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 295 ~l~~~~~dg~v~vw~~~~~ 313 (762)
.+.+-+..|+|++|++..+
T Consensus 256 IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eeeeeccCceEEEEEccCC
Confidence 8889999999999998763
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=86.76 E-value=39 Score=34.35 Aligned_cols=192 Identities=14% Similarity=0.155 Sum_probs=105.7
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE----EecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI----FSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~s~~g~~ 367 (762)
...+++....++-+.+||+.+.+... +. .+.++.+. |.-+|+.
T Consensus 67 ~kSlIigTdK~~GL~VYdL~Gk~lq~-------------------------------~~--~Gr~NNVDvrygf~l~g~~ 113 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLDGKELQS-------------------------------LP--VGRPNNVDVRYGFPLNGKT 113 (381)
T ss_dssp GG-EEEEEETTTEEEEEETTS-EEEE-------------------------------E---SS-EEEEEEEEEEEETTEE
T ss_pred ccceEEEEeCCCCEEEEcCCCcEEEe-------------------------------ec--CCCcceeeeecceecCCce
Confidence 44567777788899999997764322 11 11222221 1224443
Q ss_pred --EEEEe-cC---CeEEEEecC--CCceeccCC-------CCCCeEEEEe--CC-CCC-eEEEEecCCcEEEEEcC---C
Q 040987 368 --LYSGG-KE---GVLVVWQLD--TGKKKFLPR-------IGSPLLYFTE--SP-DPS-LSSISCADNQVHLLKMP---S 425 (762)
Q Consensus 368 --l~s~~-~d---g~i~~wd~~--~~~~~~~~~-------~~~~v~~~~~--s~-~~~-~l~~~~~d~~i~i~d~~---~ 425 (762)
|+.++ .+ .+|++|.+. ++....+.. .-..+..+++ ++ +|. +.++...+|.+..|.+. .
T Consensus 114 vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~ 193 (381)
T PF02333_consen 114 VDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGD 193 (381)
T ss_dssp EEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TT
T ss_pred EEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCC
Confidence 34443 22 468888765 344332221 1123566665 44 455 45556678888877764 2
Q ss_pred c----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-eeEEeecccccCCCCccee
Q 040987 426 M----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI-SEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 ~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~ 500 (762)
+ ++++.|... +.+..++.......|..+-++.-|+-|+....... ..+.....+ ......
T Consensus 194 g~v~~~lVR~f~~~-----------sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g----~~l~aD 258 (381)
T PF02333_consen 194 GKVSATLVREFKVG-----------SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADG----DGLVAD 258 (381)
T ss_dssp SSEEEEEEEEEE-S-----------S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSS----SSB-S-
T ss_pred CcEeeEEEEEecCC-----------CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccc----cccccC
Confidence 3 456666643 46788999998889999999988888888644322 122211111 112566
Q ss_pred EEEEEEec--CC-CeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 501 VTLVALSQ--DG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 501 v~~~~~sp--~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
+..+++-. ++ .||++++. ++++..+|+.+..
T Consensus 259 vEGlaly~~~~g~gYLivSsQ--------G~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 259 VEGLALYYGSDGKGYLIVSSQ--------GDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEEEE-CCC-EEEEEEEG--------GGTEEEEEESSTT
T ss_pred ccceEEEecCCCCeEEEEEcC--------CCCeEEEEecCCC
Confidence 77777743 44 36666664 7889999998864
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=86.34 E-value=69 Score=36.82 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=49.8
Q ss_pred ccCCCceEEEEC---C----CCCEEEEEeCCeEEEEEccCchh-----------hhheeeeeeec--cCcCeEEEEEcC-
Q 040987 233 AEMKEPQVITIS---S----SGKYFGIRKQRKLLIWKVPDVEA-----------ERVVMRKITLH--HTKKLTVLAFHP- 291 (762)
Q Consensus 233 ~~~~~v~~~~~s---p----dg~~la~~~~~~i~iwd~~~~~~-----------~~~~~~~~~~~--~~~~v~~~~~sp- 291 (762)
....+|..|+|+ . ..++|++-....+.|+...-.+. ...++..+... ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 456788889998 2 23578888888888888221111 11122222211 233567888988
Q ss_pred CCcEEEEeecCCeEEEEec
Q 040987 292 TQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~ 310 (762)
+.+.||+-...|.-.||++
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred ccceEEEEeccCcEEEEEe
Confidence 5568888889999999998
|
These proteins are found in fungi. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=86.32 E-value=33 Score=33.18 Aligned_cols=236 Identities=10% Similarity=0.037 Sum_probs=123.0
Q ss_pred ceeeEEEeCCCCEEEEeecCceEEEEEcCCC-----CceeeEEeecccccCCCCcceeEEEEEEecCCCe----------
Q 040987 448 LCRDIAFNHDGGLVALRAENYCIHFYSLLDD-----RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL---------- 512 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~---------- 512 (762)
.-+.++++|.+.+.++....+...+||.... ............- .......+.+.|+....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~---~~~~~~PTGiVfN~~~~F~vt~~g~~~~ 100 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPP---LAAEGTPTGQVFNGSDTFVVSGEGITGP 100 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCC---CCCCCCccEEEEeCCCceEEcCCCcccc
Confidence 4478999999988888888899999998621 1111111111000 001334667777654333
Q ss_pred --EEEEeeeccccCCCceeEEEEEEecCCCce--eEEEEEeecCCCCCceEEEEEcCC--CCeEEEE-eCCCcEEEEEcc
Q 040987 513 --MSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDAGISAVAFHPN--RRAAVSS-SYGGDFKVWICN 585 (762)
Q Consensus 513 --l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~~v~~~~~spd--~~~l~~~-~~dg~i~iwd~~ 585 (762)
++.++ ++++|.-|...-.... ..... ........--..+++... +.+|..+ -..++|.+||-.
T Consensus 101 a~Fif~t---------EdGTisaW~p~v~~t~~~~~~~~-~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 101 SRFLFVT---------EDGTLSGWAPALGTTRMTRAEIV-VDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred eeEEEEe---------CCceEEeecCcCCcccccccEEE-EccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 34444 7889999986543321 10100 011110122344555533 4455444 356889998865
Q ss_pred ccccccc--ccCCceeeeeecccCCCCeEE---------EEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec--cccCc
Q 040987 586 DELQQKD--LQSSGWSCHAVGSYKKKAMTA---------AAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG--ETLTP 651 (762)
Q Consensus 586 ~~~~~~~--~~~~~~~~~~~~~~~~~~i~~---------~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~--~~~~~ 651 (762)
-.+.... +.++... ..+..-.|.. ..-.++++.=+.|. -|.|-+||.. |.+++.+. +.-..
T Consensus 171 f~~~~~~g~F~DP~iP----agyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 171 FRPPPLPGSFIDPALP----AGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cccccCCCCccCCCCC----CCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 4432211 1000000 0000111111 11111221111121 4789999988 66777663 23334
Q ss_pred eeEEEEeC------CCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeecceeeeeeec
Q 040987 652 IMNMSFVG------SSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVEGQFGYASIY 703 (762)
Q Consensus 652 v~~~~~s~------dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 703 (762)
-+.|+..| .|.+|+---.||+ |..+|..+|+.+-.+.......+....++
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~--InaFD~~sG~~~g~L~~~~G~pi~i~GLW 301 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGT--INAYDPQSGAQLGQLLDPDNHPVKVDGLW 301 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCce--eEEecCCCCceeeeecCCCCCeEEecCeE
Confidence 56777755 5777887777887 99999999988776666554444444333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.56 E-value=74 Score=36.46 Aligned_cols=101 Identities=9% Similarity=0.046 Sum_probs=55.2
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC--eEEEEe-----------CCCcEEEEEccc-ccccccccC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR--AAVSSS-----------YGGDFKVWICND-ELQQKDLQS 595 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~--~l~~~~-----------~dg~i~iwd~~~-~~~~~~~~~ 595 (762)
.|+++|..++..+..+..... .. .-.+..+.|+.... +++++. .+|.++.|++-. ++....+.+
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~n-e~-a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~ 931 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQN-EA-AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK 931 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCC-cc-hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec
Confidence 588888887776555432211 11 23466667765433 334333 234567776533 332222211
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVA 643 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~ 643 (762)
.. -.+.+ .+..|-..++.+|-...+++||+...++++
T Consensus 932 T~---------~~~~v--~Ai~~f~~~~LagvG~~l~~YdlG~K~lLR 968 (1205)
T KOG1898|consen 932 TE---------IPGPV--GAICPFQGRVLAGVGRFLRLYDLGKKKLLR 968 (1205)
T ss_pred cC---------CCccc--eEEeccCCEEEEecccEEEEeeCChHHHHh
Confidence 11 12233 455677778777778899999998765544
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.54 E-value=20 Score=37.18 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=21.1
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
-.|..+..++.|..++-.|.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 357788889999999988888865543
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.54 E-value=20 Score=41.98 Aligned_cols=72 Identities=7% Similarity=0.040 Sum_probs=45.6
Q ss_pred CCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 607 KKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
+...+.+..+....+.+.....+.+-+|+.........+ .+....++.++..++++..||. +.+||...+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~~h~Dgs--~~fWd~s~g~~ 268 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAY-----LPNGQLESRDGSHFVSYHTDGS--YAFWDVSSGKL 268 (993)
T ss_pred cccccceeeeecCCCcceeeeeeeeeehhcccccchhhc-----ccccccCccCCceEEEEEecCC--EEeeecCCCce
Confidence 344555555555555555555666777766544332222 2222222889999999999998 99999999866
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=85.17 E-value=61 Score=35.14 Aligned_cols=261 Identities=12% Similarity=0.068 Sum_probs=113.6
Q ss_pred cCCCcEEEEeecCCeEEEEeccCCce-eecccccccccccccccCCCCcccCCccccceeeecc-ccceeEEEEecCC-C
Q 040987 290 HPTQRIVAAGDVTGRILIWRGFGDRT-FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH-PSEVSVLIFSSDG-A 366 (762)
Q Consensus 290 sp~~~~l~~~~~dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~~g-~ 366 (762)
..++..++.+..+|.+....+..... +. +..+ +. .....++.+..+| .
T Consensus 219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~----------------------------i~~~-g~~~~~~s~l~~l~~g~d 269 (504)
T PF10433_consen 219 DKDGDRILLQDEDGDLYLLTLDNDGGSIS----------------------------ITYL-GTLCSIASSLTYLKNGGD 269 (504)
T ss_dssp STTSSEEEEEETTSEEEEEEEEEEEEEEE----------------------------EEEE-EE--S-ESEEEEESTT--
T ss_pred cCCCCEEEEEeCCCeEEEEEEEECCCeEE----------------------------EEEc-CCcCChhheEEEEcCCCE
Confidence 45677888889999999888754321 00 1111 12 3345566666554 3
Q ss_pred EEEEEecCCe--EEEEecCCCceeccCCCCCCeEEEEeCCC----CC------eEEEEe---cCCcEEEEEcCCceE--E
Q 040987 367 YLYSGGKEGV--LVVWQLDTGKKKFLPRIGSPLLYFTESPD----PS------LSSISC---ADNQVHLLKMPSMEI--I 429 (762)
Q Consensus 367 ~l~s~~~dg~--i~~wd~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~d~~i~i~d~~~~~~--~ 429 (762)
+|+.|+.-|. +..|....-+.......-+++..++..+. .. .|++++ .+|.+++..-.-+-. .
T Consensus 270 ~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~ 349 (504)
T PF10433_consen 270 YLFVGSEFGDSQLLQISLSNLEVLDSLPNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLE 349 (504)
T ss_dssp EEEEEESSS-EEEEEEESESEEEEEEE----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--E
T ss_pred EEEEEEecCCcEEEEEeCCCcEEEEeccCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeee
Confidence 6777776544 44444322222333344467888877421 11 455544 356777764322111 1
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcC---CCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLL---DDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
........ + ..++.+.... ++.+|+....+ .-+++.+. ....+.++ ... ++... ...+.+-.
T Consensus 350 ~~~~~l~~-v-------~~iW~l~~~~~~~~~lv~S~~~-~T~vl~~~~~d~~e~~~e~-~~~-~f~~~---~~Tl~~~~ 415 (504)
T PF10433_consen 350 LASSELPG-V-------TGIWTLKLSSSDHSYLVLSFPN-ETRVLQISEGDDGEEVEEV-EED-GFDTD---EPTLAAGN 415 (504)
T ss_dssp EEEEEEST-E-------EEEEEE-SSSSSBSEEEEEESS-EEEEEEES----SSEEEEE-----TS-SS---S-EEEEEE
T ss_pred eeccCCCC-c-------eEEEEeeecCCCceEEEEEcCC-ceEEEEEecccCCcchhhh-hhc-cCCCC---CCCeEEEE
Confidence 11111110 0 2333333322 24566665544 44566654 23333222 111 11110 12222222
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
+. + ..++=.. ...|++.+....+...... .+. ...|.+.+.. +.+++.+-.++.+..+.+.
T Consensus 416 ~~-~-~~ivQVt----------~~~i~l~~~~~~~~~~~w~----~~~-~~~I~~a~~~--~~~v~v~~~~~~~~~~~~~ 476 (504)
T PF10433_consen 416 VG-D-GRIVQVT----------PKGIRLIDLEDGKLTQEWK----PPA-GSIIVAASIN--DPQVLVALSGGELVYFELD 476 (504)
T ss_dssp ET-T-TEEEEEE----------SSEEEEEESSSTSEEEEEE-----TT-S---SEEEES--SSEEEEEE-TTEEEEEEEE
T ss_pred cC-C-CeEEEEe----------cCeEEEEECCCCeEEEEEe----CCC-CCeEEEEEEC--CCEEEEEEeCCcEEEEEEE
Confidence 22 3 3333332 2468888877665544332 122 4566666664 3566666668889999887
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
......... ..........|.|+..+|
T Consensus 477 ~~~~~~~~~------~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 477 DNKISVSDN------DETILELDNEISCLSIEP 503 (504)
T ss_dssp TTEEEEEEE----------EE-SS-EEEEE---
T ss_pred CCceeeeee------ccccccCCCceEEEEeCC
Confidence 665532221 000001356777877765
|
... |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=84.87 E-value=6.8 Score=35.03 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=25.0
Q ss_pred CeEEEEEcCCC------cEEEEeecCCeEEEEeccC
Q 040987 283 KLTVLAFHPTQ------RIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 283 ~v~~~~~sp~~------~~l~~~~~dg~v~vw~~~~ 312 (762)
.+..++|||-| -.||+...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78899999954 3788889999999998643
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=84.45 E-value=4.6 Score=25.14 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=17.7
Q ss_pred ccCceeEEEEeCCCCEEEEEEcC
Q 040987 648 TLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.........|||||++|+.++..
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred CCccccCEEEecCCCEEEEEecC
Confidence 44567889999999999988755
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=84.12 E-value=1.1e+02 Score=37.28 Aligned_cols=69 Identities=13% Similarity=0.037 Sum_probs=48.8
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLW 634 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw 634 (762)
...|++++.-.+ +.+++....|.+.... ..+...... ..+-.+.|..++...+..+.|...+|.++--
T Consensus 702 ~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~p~~l~----------~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 702 DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGRPVPLS----------RPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred cCcceeEEEEcC-CceEEeccCCcccccc-CCCCCccCC----------CCCCCcchhheeeccccceeEecCCCceeec
Confidence 456788887755 5566677788898888 555533322 2244688999999988888888788887765
Q ss_pred e
Q 040987 635 D 635 (762)
Q Consensus 635 d 635 (762)
+
T Consensus 770 ~ 770 (1774)
T PF11725_consen 770 P 770 (1774)
T ss_pred C
Confidence 4
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.95 E-value=69 Score=34.80 Aligned_cols=261 Identities=13% Similarity=0.031 Sum_probs=136.3
Q ss_pred CeEEEEeCCCCCeEEEEecC-----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--
Q 040987 396 PLLYFTESPDPSLSSISCAD-----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-- 468 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-- 468 (762)
.+-.++.|||+++++.+-.. -.+++.|+.+++.+..... +...+++|.+|++.+.....|.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~------------~~~~~~~Wa~d~~~lfYt~~d~~~ 197 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT------------NTSGSFAWAADGKTLFYTRLDENH 197 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc------------ccccceEEecCCCeEEEEEEcCCC
Confidence 45667889999999876432 2688899988776544322 3457899999999888776542
Q ss_pred ---eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 469 ---CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 469 ---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
.+....+.+.....++...... ......+.-+...++|+....+ .....+++.+.+.......+
T Consensus 198 rp~kv~~h~~gt~~~~d~lvyeE~d-------~~f~~~v~~s~s~~yi~i~~~~------~~tsE~~ll~a~~p~~~p~v 264 (682)
T COG1770 198 RPDKVWRHRLGTPGSSDELVYEEKD-------DRFFLSVGRSRSEAYIVISLGS------HITSEVRLLDADDPEAEPKV 264 (682)
T ss_pred CcceEEEEecCCCCCcceEEEEcCC-------CcEEEEeeeccCCceEEEEcCC------CcceeEEEEecCCCCCceEE
Confidence 2333333332122222222111 2223444445566666655411 14567888887766554333
Q ss_pred EEEeecCCCCCceEEEEEcCCCC-eEEEEeCCC-cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNRR-AAVSSSYGG-DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
......+| . ..+ ...+. +++-...+| ..+|+.... ......|... -.|...+.--.|+--.++|
T Consensus 265 v~pr~~g~-e---Y~~--eh~~d~f~i~sN~~gknf~l~~ap~-----~~~~~~w~~~---I~h~~~~~l~~~~~f~~~l 330 (682)
T COG1770 265 VLPRENGV-E---YSV--EHGGDRFYILSNADGKNFKLVRAPV-----SADKSNWREL---IPHREDVRLEGVDLFADHL 330 (682)
T ss_pred EEEcCCCc-E---Eee--eecCcEEEEEecCCCcceEEEEccC-----CCChhcCeee---eccCCCceeeeeeeeccEE
Confidence 22111222 1 111 12233 344444444 455555443 0111244322 2355556555666666677
Q ss_pred EEEc--C--CeEEEEeCCCCeEEEEeccccCceeEEEEeC--CCC--EEEEEEcCCCCeEEEEECCCCceeeEEEEeecc
Q 040987 624 AVAA--E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVG--SSE--YLVATSWGSKPQLSVWNMSKLSISWSYLLHVEG 695 (762)
Q Consensus 624 a~~~--d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~--dg~--~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~~ 695 (762)
+... + ..|++++.++++....--.-..-...+..++ +.. ++-..|.--..++.=+|+.+++.....+.+.-+
T Consensus 331 Vl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~ 410 (682)
T COG1770 331 VLLERQEGLPRVVVRDRKTGEERGIAFDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG 410 (682)
T ss_pred EEEecccCCceEEEEecCCCceeeEEecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC
Confidence 7664 3 5788999988766542111111122333333 222 222233333334888899999887766666553
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.25 E-value=74 Score=34.60 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=41.1
Q ss_pred cCcccccCCceeecCCCEEEEEeC--C----EEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCTS--N----TVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~~--~----~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
+|.-....+++.|||++++|.+-| | +++|-|+++|+.+-..- .+....++|.+|++
T Consensus 125 g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~d~~ 186 (682)
T COG1770 125 GHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAADGK 186 (682)
T ss_pred cccceeeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEecCCC
Confidence 333333335889999999999985 2 89999999998664332 33467789999995
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.11 E-value=21 Score=41.66 Aligned_cols=150 Identities=13% Similarity=0.075 Sum_probs=86.3
Q ss_pred ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE--------EeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA--------FNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+.|+.+.+|+.+++.....+.+.. ..|..+. |-|.=+++++.+..-.|.++-+.-.+.....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~s----------htIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLS----------HTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchh----------hhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 378999999999977777776655 3333332 3333344444444455666544322211111
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-------------------eeEE
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-------------------EFTL 545 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-------------------~~~~ 545 (762)
........ ..-....|.++....+|+.+.+| .|+.|+-.-...... ...+
T Consensus 166 ~~f~~~~~-i~~dg~~V~~I~~t~nGRIF~~G----------~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~ 234 (1311)
T KOG1900|consen 166 SIFNTSFK-ISVDGVSVNCITYTENGRIFFAG----------RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSL 234 (1311)
T ss_pred ccccccee-eecCCceEEEEEeccCCcEEEee----------cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhh
Confidence 10000000 00004568899988999999888 455443222221110 0011
Q ss_pred EEEeec-CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 546 STIVYE-PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 546 ~~~~~~-~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
. ... .+ ..+|..++.......+.+-+..|+|++||+..
T Consensus 235 ~--~~~~~~-~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 235 L--SVPGSS-KDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred h--cCCCCC-CCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 1 112 34 67899999998888999999999999999977
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.69 E-value=5.4 Score=43.75 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=30.8
Q ss_pred cceeEEEEeC----CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEec
Q 040987 115 APVTTVIVVP----ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVK 162 (762)
Q Consensus 115 ~~V~~v~~s~----~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~ 162 (762)
..+..++++. +. .+|++.+.|+++|+||+.+++++.+....
T Consensus 215 ~~~~~~~~~~~~~~~~-------~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-------TFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETT-------TEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCC-------CEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666666 44 68899999999999999999998887644
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.12 E-value=27 Score=36.26 Aligned_cols=95 Identities=14% Similarity=0.140 Sum_probs=52.4
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEec---cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRG---FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
.|..+..++.|..++..+.+|.+..+=. -....++..........++...+ +.. ....-.+..+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~------------~ft-ss~~ltl~Qa 171 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAER------------FFT-SSTSLTLKQA 171 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccce------------eec-cCCceeeeec
Confidence 4667778888888888888885544321 11111111111122222211111 000 1112235677
Q ss_pred EEecCC---CEEEEEecCCeEEEEecCCCceecc
Q 040987 360 IFSSDG---AYLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 360 ~~s~~g---~~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
+|+|+. ..|..-..|..|++||+......++
T Consensus 172 ~WHP~S~~D~hL~iL~sdnviRiy~lS~~telyl 205 (741)
T KOG4460|consen 172 AWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYL 205 (741)
T ss_pred cccCCccCCceEEEEecCcEEEEEecCCcchhhc
Confidence 898865 5677778899999999988776543
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=81.97 E-value=6.5 Score=24.43 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=21.8
Q ss_pred eecCCccceeEEEEeCCCCcccceeeeEEeeecC--CeEEEE
Q 040987 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLD--GTIKYW 148 (762)
Q Consensus 109 ~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d--~~i~vW 148 (762)
.+....+.-....|||||+ .+++++..+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk------~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGK------YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSS------EEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCC------EEEEEecCCCCCCcCEE
Confidence 3444556778899999996 455666666 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.97 E-value=45 Score=36.64 Aligned_cols=268 Identities=10% Similarity=0.061 Sum_probs=126.4
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
|-..++.+.|.-++--++..-.|.+ .........-...+.|...+||.|.+.++....+..|.+++-. ..++..
T Consensus 75 hf~~~~~~~f~~~~gDii~~~~dp~-----p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~-fd~ise 148 (1243)
T COG5290 75 HFHVLTFEYFLIDEGDIIHLVNDPT-----PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKY-FDPISE 148 (1243)
T ss_pred hhhhhheeeEEecCCcEEEEEcCCC-----cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecc-ccccch
Confidence 5556666777665544444444432 0111112334456789999999999988888788888887643 122211
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..-..... .. . +.-..+-|......+- +..-..++-|. .....+... .. .+....-.-+.|-.|..
T Consensus 149 ~~L~~~dl--~e-f-~khi~VgWgkketqfr--gk~~raqlrdp---tmp~~vD~G--~l---~avd~~k~~i~wrgD~~ 214 (1243)
T COG5290 149 YHLKKSDL--VE-F-GKHIRVGWGKKETQFR--GKGARAQLRDP---TMPYMVDYG--DL---FAVDTNKKIIFWRGDTE 214 (1243)
T ss_pred hhcchhHH--HH-h-ccceEeeecccchhcc--ccchhhhccCC---CCccccccc--ce---eEeeCCceEEEEccCcc
Confidence 11000000 00 0 0111222221111100 00000111111 111111000 00 00011123456667777
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC-----cEEEEEccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG-----DFKVWICND 586 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg-----~i~iwd~~~ 586 (762)
+.+++.... +....+++|..+..-.... .+. .+.-..+.|-|.|..+++-..|| .|.++.-+.
T Consensus 215 y~~v~r~Ee-----~prra~rvysreg~lds~s------ep~-~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNG 282 (1243)
T COG5290 215 YNLVGRSEE-----RPRRAFRVYSREGQLDSAS------EPV-TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNG 282 (1243)
T ss_pred eeeecchhc-----ccccceeeecccccccccc------CCc-ccchhccccccCCceeeeeccCCCCCcceEEEEccCC
Confidence 777775210 1234677776542211100 122 33445689999999999987665 355554432
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
-+ ...+. ...+....+..++|.-....+|++..+.+.+|-..+-..-....-.-..+.-+.|+|.
T Consensus 283 Lr-HGef~--------lr~~~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe 347 (1243)
T COG5290 283 LR-HGEFD--------LRVGCDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPE 347 (1243)
T ss_pred cc-cCCcc--------ccCCchhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccc
Confidence 11 11110 0011234455677766666777777889999988775433222222334667889984
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=81.82 E-value=63 Score=32.80 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=35.1
Q ss_pred CCCEEEEEecC-----------CeEEEEecCCCceeccCCCCC----Ce-EEEEeCCCCCeEEEEec-------------
Q 040987 364 DGAYLYSGGKE-----------GVLVVWQLDTGKKKFLPRIGS----PL-LYFTESPDPSLSSISCA------------- 414 (762)
Q Consensus 364 ~g~~l~s~~~d-----------g~i~~wd~~~~~~~~~~~~~~----~v-~~~~~s~~~~~l~~~~~------------- 414 (762)
+++..+.|+.+ ..+.+||.++.+...+..... .. .+++ .-+++.++.++.
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~ 215 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYE 215 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCcccee
Confidence 55666666643 257889998877755433221 11 1122 235566555542
Q ss_pred CCcEEEEEcCCceE
Q 040987 415 DNQVHLLKMPSMEI 428 (762)
Q Consensus 415 d~~i~i~d~~~~~~ 428 (762)
.+.+.+||..+.+-
T Consensus 216 ~~~v~~yd~~~~~W 229 (341)
T PLN02153 216 SNAVQFFDPASGKW 229 (341)
T ss_pred cCceEEEEcCCCcE
Confidence 24588888876543
|
|
| >PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4 | Back alignment and domain information |
|---|
Probab=81.47 E-value=2.9 Score=32.06 Aligned_cols=51 Identities=14% Similarity=0.232 Sum_probs=35.9
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLI 260 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~i 260 (762)
..+..+|.+..||..+++.. .+...-.-.+.+++++|+.+|+.+....-+|
T Consensus 31 le~~~~GRll~ydp~t~~~~--vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri 81 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETT--VLLDGLYFPNGVALSPDESFVLVAETGRYRI 81 (89)
T ss_dssp HHT---EEEEEEETTTTEEE--EEEEEESSEEEEEE-TTSSEEEEEEGGGTEE
T ss_pred ecCCCCcCEEEEECCCCeEE--EehhCCCccCeEEEcCCCCEEEEEeccCceE
Confidence 34678899999999999875 4444456789999999999998886544443
|
3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B. |
| >COG5276 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.03 E-value=54 Score=31.52 Aligned_cols=275 Identities=8% Similarity=0.016 Sum_probs=138.3
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
.+-+..+.++.+ +...+..+.-+++.|+.+...-. ++..+.- .+--++
T Consensus 86 ~~l~~Dv~vse~--yvyvad~ssGL~IvDIS~P~sP~---------------------------~~~~lnt-~gyayg-- 133 (370)
T COG5276 86 RDLFADVRVSEE--YVYVADWSSGLRIVDISTPDSPT---------------------------LIGFLNT-DGYAYG-- 133 (370)
T ss_pred hhhhheeEeccc--EEEEEcCCCceEEEeccCCCCcc---------------------------eeccccC-CceEEE--
Confidence 445667777644 56666677779999986653211 1111111 122223
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCceecc----CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---EEEEEc
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKKKFL----PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---IIRSIS 433 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~ 433 (762)
|.-.|++.+.+..|.-+.+.|+.+...-.+ .........++.| |++-+.+..++.+.+.|+.... .+....
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n 211 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN 211 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe
Confidence 334688888888666677888876554221 1112223445554 5677777789999999987632 222222
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
. ...+.++..+++-.+++.. ..| +.+-|..+.+....+..... ...+..-.+.-.+++.
T Consensus 212 ~-----------g~g~~sv~vsdnr~y~vvy-~eg-vlivd~s~~ssp~~~gsyet--------~~p~~~s~v~Vs~~~~ 270 (370)
T COG5276 212 T-----------GPGTYSVSVSDNRAYLVVY-DEG-VLIVDVSGPSSPTVFGSYET--------SNPVSISTVPVSGEYA 270 (370)
T ss_pred c-----------CCceEEEEecCCeeEEEEc-ccc-eEEEecCCCCCceEeecccc--------CCcccccceeccccee
Confidence 1 1256777777765555543 333 77778777665544433221 1112211333345555
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.... .+.-+.+-|.......+........+- .-..+..+ +.++..+..+ +..+-+....+.....
T Consensus 271 Yvad---------ga~gl~~idisnp~spfl~ss~~t~g~---~a~gi~ay--~~y~yiadkn-~g~vV~~s~~s~m~~~ 335 (370)
T COG5276 271 YVAD---------GAKGLPIIDISNPPSPFLSSSLDTAGY---QAAGIRAY--GNYNYIADKN-TGAVVDASPPSMMDKR 335 (370)
T ss_pred eeec---------cccCceeEeccCCCCCchhccccCCCc---cccceEEe--cCeeEeccCC-ceEEEeCCChhhcccc
Confidence 5554 445566666665443332222111111 11222222 3344333333 3444444433322222
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+ +...-+.+.+.+-+.+.+.+.. ++.+.||+.
T Consensus 336 ~-----------g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 336 P-----------GRPTIGQSCDVSVDTQIIYSTDYNGGLSIIEY 368 (370)
T ss_pred c-----------CcceEeeecceEEEeeEEEEeecCCCEEEEEe
Confidence 1 1122233444444556555555 777888875
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.65 E-value=0.29 Score=49.30 Aligned_cols=142 Identities=11% Similarity=0.142 Sum_probs=97.3
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCCCcE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYGGDF 579 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~dg~i 579 (762)
.-...|-|.+.-++.++ -+..+..||-...... .. .+++....++|.-++..++. +-..+.+
T Consensus 37 pi~~~w~~e~~nlavac---------a~tiv~~YD~agq~~l-e~-------n~tg~aldm~wDkegdvlavlAek~~pi 99 (615)
T KOG2247|consen 37 PIIHRWRPEGHNLAVAC---------ANTIVIYYDKAGQVIL-EL-------NPTGKALDMAWDKEGDVLAVLAEKTGPI 99 (615)
T ss_pred cceeeEecCCCceehhh---------hhhHHHhhhhhcceec-cc-------CCchhHhhhhhccccchhhhhhhcCCCe
Confidence 34456778777777776 5667778886544221 11 11455667888887776544 4556889
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.+||+.+........ +....-.-+.|++.+..++.+. .|.+.|++..+.+.+.....|..++.++++.
T Consensus 100 ylwd~n~eytqqLE~-----------gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLES-----------GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred eechhhhhhHHHHhc-----------cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 999998765443321 1111122278999999999998 8999999999888777776599999999999
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
+.+ +.+.++.|.
T Consensus 169 lEd-~vil~dcd~ 180 (615)
T KOG2247|consen 169 LED-YVILCDCDN 180 (615)
T ss_pred ccc-eeeecCcHH
Confidence 975 455555554
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=80.63 E-value=20 Score=37.73 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.2
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
..|..++..+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999964
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.62 E-value=1.2e+02 Score=35.05 Aligned_cols=188 Identities=9% Similarity=0.100 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC--eEEEEeee-ccccC-CCceeEEEEEEecCCCceeE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS--LMSTVDIK-LAEEG-IGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~~-~~~~~-~~~d~~i~iwd~~~~~~~~~ 544 (762)
.|+++|..+++.+..+....... ...+..+.|+.... +++++... ...+. .-.++.++.|+.-.......
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~------a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le 927 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEA------AFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE 927 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcc------hhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee
Confidence 48888888877666554432211 44567777766444 33443321 11110 01445677777654433222
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEE
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA 624 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la 624 (762)
+-.. ..- .+.+ .+..|-..++.+| ....+++||+...+..+..+ ...-...|+.+.+ .+..++
T Consensus 928 llh~--T~~-~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e---------~k~~p~~Is~iqt--~~~RI~ 990 (1205)
T KOG1898|consen 928 LLHK--TEI-PGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE---------LKFIPNRISSIQT--YGARIV 990 (1205)
T ss_pred eeec--cCC-Cccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhh---------hccCceEEEEEee--cceEEE
Confidence 2110 111 2233 4566766655544 35689999998887766543 1112455666665 566788
Q ss_pred EEc--CC-eEEEEeCCCCeEEEEecccc-CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 625 VAA--ET-VITLWDPDRNVLVAVIGETL-TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 625 ~~~--d~-~i~iwd~~~~~~~~~l~~~~-~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+|. ++ ....|+-+..+++....... ..|+.+.+-.. ..+|.+..-|. +.+-.+..
T Consensus 991 VgD~qeSV~~~~y~~~~n~l~~fadD~~pR~Vt~~~~lD~-~tvagaDrfGN--i~~vR~P~ 1049 (1205)
T KOG1898|consen 991 VGDIQESVHFVRYRREDNQLIVFADDPVPRHVTALELLDY-DTVAGADRFGN--IAVVRIPP 1049 (1205)
T ss_pred EeeccceEEEEEEecCCCeEEEEeCCCccceeeEEEEecC-CceeeccccCc--EEEEECCC
Confidence 886 33 34556666666654443221 22555555443 34665644443 66665543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.98 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.98 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.97 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.97 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.97 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.93 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.93 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.92 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.92 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.92 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.92 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.9 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.89 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.88 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.87 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.86 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.85 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.83 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.83 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.8 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.79 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.79 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.76 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.74 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.74 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.73 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.73 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.73 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.72 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.71 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.71 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.7 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.69 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.68 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.68 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.68 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.68 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.68 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.66 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.65 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.65 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.63 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.63 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.62 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.61 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.59 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.57 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.57 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.56 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.55 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.55 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.53 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.53 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.51 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.49 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.46 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.46 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.46 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.41 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.4 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.4 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.39 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.38 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.38 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.38 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.36 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.35 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.35 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.35 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.34 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.34 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.32 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.31 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.3 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.27 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.24 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.19 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.19 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.15 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.15 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.08 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.06 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.04 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.98 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.98 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.98 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.96 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 98.95 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.95 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.93 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.91 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.91 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.86 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.85 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.8 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.8 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.78 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.74 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.74 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.7 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.66 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.62 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.59 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.56 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.54 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.53 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.52 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.51 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.49 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.47 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.46 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.46 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.44 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.43 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.42 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.4 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.39 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.36 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.35 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.33 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.33 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.32 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.25 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.16 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.15 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.14 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 98.14 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.13 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.13 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.09 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.09 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 98.03 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 98.02 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.0 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.99 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.93 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.85 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.82 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.81 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.8 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.75 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.75 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.69 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.67 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.67 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.67 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 97.57 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.55 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.54 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.45 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.42 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.35 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.25 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.19 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 97.16 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.08 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.0 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.98 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.98 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.91 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.91 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.81 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.79 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.73 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 96.59 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.34 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 96.28 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.27 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.13 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.99 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.9 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.78 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.52 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 95.45 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 95.0 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 94.58 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.71 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.44 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 91.33 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 85.96 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 83.78 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 83.6 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 80.1 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-67 Score=577.36 Aligned_cols=534 Identities=19% Similarity=0.298 Sum_probs=438.6
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecC
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG 112 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~ 112 (762)
..+.+|+ +.++|+|+.||.|++||........+.+|.+.|.+ ++|||||++||+++ |++|+|||. +++++.++.+
T Consensus 21 ~~a~spd--g~~las~~~d~~v~iWd~~~~~~~~l~gh~~~V~~-l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~ 96 (577)
T 2ymu_A 21 GVAFSPD--GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG 96 (577)
T ss_dssp EEEECTT--SSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEE-EEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC
T ss_pred EEEECCC--CCEEEEEeCCCEEEEEECCCCEEEEEeCCCCCEEE-EEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC
Confidence 4455665 66999999999999999877677788999999997 99999999999999 799999996 7889999999
Q ss_pred CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecc-cccCCcccCCC-------
Q 040987 113 HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPS-LLRQPAQSDEK------- 183 (762)
Q Consensus 113 h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~------- 183 (762)
|...|.+++|+|++ .+|++++.|+++++|+...... .....+. .+..+.+.. ...........
T Consensus 97 ~~~~v~~~~~s~d~-------~~l~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 97 HSSSVRGVAFSPDG-------QTIASASDDKTVKLWNRNGQLL-QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp CSSCEEEEEECTTS-------SEEEEEETTSCEEEEETTCCEE-EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CCCCEEEEEECCCC-------CEEEEEcCCCceeeccccccee-eeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 99999999999999 7889999999999999865543 3344343 666665511 00000000000
Q ss_pred -----------CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE
Q 040987 184 -----------PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI 252 (762)
Q Consensus 184 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~ 252 (762)
...........+... .++++.|+.|++||. +++.+ .....|...|.+++|+||+++|++
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~--------l~~~~~d~~v~~w~~-~~~~~-~~~~~~~~~v~~~~~s~dg~~l~~ 238 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQT--------IASASDDKTVKLWNR-NGQLL-QTLTGHSSSVRGVAFSPDGQTIAS 238 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSC--------EEEEETTSEEEEECT-TSCEE-EEEECCSSCEEEEEECTTSSCEEE
T ss_pred ceeeeeeccCCCcceeeeeecCCCCE--------EEEEcCCCEEEEEeC-CCcEE-EEEecCCCCEEEEEECCCCCEEEE
Confidence 000000000011111 178899999999996 44544 567789999999999999999985
Q ss_pred -EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccc
Q 040987 253 -RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNE 331 (762)
Q Consensus 253 -~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 331 (762)
+.|+.|++|+..... .....+|...|.+++|+|++++|++++.|+.|++|+....
T Consensus 239 ~~~d~~i~~w~~~~~~------~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~------------------ 294 (577)
T 2ymu_A 239 ASDDKTVKLWNRNGQL------LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ------------------ 294 (577)
T ss_dssp EETTSCEEEECTTSCE------EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC------------------
T ss_pred EeCCCEEEEEeCCCCE------EEEEecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc------------------
Confidence 578999999965432 2566789999999999999999999999999999996432
Q ss_pred cCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE
Q 040987 332 EERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
....+.+|...|.+++|+|++++|++++.|+.|++||........+..+...+.+++|+|+++++++
T Consensus 295 -------------~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 295 -------------LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp -------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred -------------EEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 3467788999999999999999999999999999999988777778888999999999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++.++.+++|+. +++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||.. ++.+..+. .|
T Consensus 362 ~~~dg~v~~~~~-~~~~~~~~~~~~----------~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~----~~ 425 (577)
T 2ymu_A 362 ASDDKTVKLWNR-NGQLLQTLTGHS----------SSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT----GH 425 (577)
T ss_dssp EETTSEEEEEET-TCCEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE----CC
T ss_pred EeCCCEEEEEcC-CCCEEEEecCCC----------CCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec----CC
Confidence 999999999996 577888888877 789999999999999999999999999964 44433332 22
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...|.+++|+||+++|++++ .|+.|++||.. ++....+ .+| ...|++++|+||+++|+
T Consensus 426 ------~~~v~~~~~s~d~~~l~~~~---------~d~~v~~w~~~-~~~~~~~-----~~~-~~~v~~~~~spd~~~la 483 (577)
T 2ymu_A 426 ------SSSVWGVAFSPDDQTIASAS---------DDKTVKLWNRN-GQLLQTL-----TGH-SSSVRGVAFSPDGQTIA 483 (577)
T ss_dssp ------SSCEEEEEECTTSSEEEEEE---------TTSEEEEEETT-SCEEEEE-----ECC-SSCEEEEEECTTSCEEE
T ss_pred ------CCCeEEEEECCCCCEEEEEc---------CCCEEEEEECC-CCEEEEE-----cCC-CCCEEEEEEcCCCCEEE
Confidence 67799999999999999999 88999999964 3333333 578 88999999999999999
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~ 650 (762)
+++.|+.|++||.. ++.... ..+|...|++++|+|||++||+++ |+.|++||. +++++..+.+|.+
T Consensus 484 s~~~d~~i~iw~~~-~~~~~~-----------~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 484 SASDDKTVKLWNRN-GQLLQT-----------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EEETTSEEEEEETT-SCEEEE-----------EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSS
T ss_pred EEeCCCEEEEEcCC-CCEEEE-----------EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCC
Confidence 99999999999964 333332 346889999999999999999998 999999996 5888999999999
Q ss_pred ceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 651 PIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 651 ~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|++++|+|||++|+|++.|+. |++||
T Consensus 551 ~v~~~~fs~dg~~l~s~~~D~~--i~~Wd 577 (577)
T 2ymu_A 551 SVWGVAFSPDGQTIASASSDKT--VKLWN 577 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSC--EEEEC
T ss_pred CEEEEEEcCCCCEEEEEeCCCE--EEEeC
Confidence 9999999999999999999998 99997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-64 Score=560.50 Aligned_cols=531 Identities=11% Similarity=0.096 Sum_probs=422.0
Q ss_pred ecCCcceeEEEEecCCCeEEEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecC
Q 040987 37 RKPRSRSFIFAVARSSGLCRTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEG 112 (762)
Q Consensus 37 ~~~~~~~~~~a~~~~~g~i~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~ 112 (762)
.+|+ +.++|++. ++.|++|++.++ ....+.+|...|.+ ++|||||++||+|+ |++|+|||+.++ ....++.+
T Consensus 26 ~spd--g~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~-~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~ 101 (611)
T 1nr0_A 26 NTPA--GDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTV-AKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV 101 (611)
T ss_dssp ECTT--SSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC
T ss_pred eCCC--CCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEE-EEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc
Confidence 3554 55888876 569999999864 44567899999997 99999999999999 799999999754 35678899
Q ss_pred CccceeEEEEeCCCCcccceeeeEEeeecC----CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCce
Q 040987 113 HKAPVTTVIVVPASTPATKILSYCWTASLD----GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKL 187 (762)
Q Consensus 113 h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d----~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~ 187 (762)
|.+.|.+++|+|++ ++|++++.+ ++|++|| .++....+.+|. .+.+++| .+++.. .
T Consensus 102 ~~~~v~~v~fs~dg-------~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f--------~p~~~~--~ 162 (611)
T 1nr0_A 102 FSGPVKDISWDSES-------KRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDF--------KPSRPF--R 162 (611)
T ss_dssp SSSCEEEEEECTTS-------CEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEE--------CSSSSC--E
T ss_pred cCCceEEEEECCCC-------CEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEE--------CCCCCe--E
Confidence 99999999999999 577777765 3677776 567777788887 8888877 333221 0
Q ss_pred EEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCc
Q 040987 188 FAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDV 266 (762)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~ 266 (762)
+ ++|+.|+.|++||..++++. ..+.+|...|.+++|+|||++||+ +.|+.|++||+.++
T Consensus 163 l-------------------~s~s~D~~v~lwd~~~~~~~-~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g 222 (611)
T 1nr0_A 163 I-------------------ISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222 (611)
T ss_dssp E-------------------EEEETTSCEEEEETTTBEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred E-------------------EEEeCCCeEEEEECCCCeEe-eeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence 1 67889999999999988877 567789999999999999999985 57999999999887
Q ss_pred hhhhheeeeee-e------ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCccc
Q 040987 267 EAERVVMRKIT-L------HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRD 339 (762)
Q Consensus 267 ~~~~~~~~~~~-~------~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (762)
+.. ..+ . +|.+.|.+++|+|++++|++++.|++|++||+.+++.....
T Consensus 223 ~~~-----~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~-------------------- 277 (611)
T 1nr0_A 223 TKT-----GVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-------------------- 277 (611)
T ss_dssp CEE-----EECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------
T ss_pred cEe-----eeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee--------------------
Confidence 753 222 2 79999999999999999999999999999999876543211
Q ss_pred CCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 340 NDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 340 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
..-..+...+..+.| +++.+++++.|+.+++||..+++.. .+..|...|.+++|+|+|++|++++.|+.|
T Consensus 278 -------~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v 348 (611)
T 1nr0_A 278 -------PVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHI 348 (611)
T ss_dssp -------ECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred -------cCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcE
Confidence 000123344556666 6788999999999999999988754 456788999999999999999999999999
Q ss_pred EEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee-------------eE
Q 040987 419 HLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS-------------EV 484 (762)
Q Consensus 419 ~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~-------------~~ 484 (762)
++||+.+++....+ .+|. ..+.+++|++++ .+++++.|+.+++|+........ .+
T Consensus 349 ~~Wd~~~~~~~~~~~~~h~----------~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 417 (611)
T 1nr0_A 349 NSWDISTGISNRVFPDVHA----------TMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGL 417 (611)
T ss_dssp EEEETTTCCEEECSSCSCS----------SCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEE
T ss_pred EEEECCCCceeeecccCCc----------ceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccceeeeecCCCCcEE
Confidence 99999998876654 3343 789999999776 68888999999999986543211 00
Q ss_pred Eeeccc----------------c-cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 485 QVCERN----------------H-QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 485 ~~~~~~----------------~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
.....+ . .....+...+.+++|+|||++||+++ .|+.|++||+.++.... +..
T Consensus 418 ~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs---------~D~~v~lwd~~~~~~~~-~~~ 487 (611)
T 1nr0_A 418 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGG---------QDSKVHVYKLSGASVSE-VKT 487 (611)
T ss_dssp EECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEE---------TTSEEEEEEEETTEEEE-EEE
T ss_pred EEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeC---------CCCeEEEEEccCCceee-eec
Confidence 000000 0 00000134578999999999999999 89999999998764321 111
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
.+| ...|++++|+|||++|++++.|++|++||+.+ ++..... ....|...|.+++|+|||++||++
T Consensus 488 ---~~h-~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~---------~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 488 ---IVH-PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---------SWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp ---EEC-SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---------CCCCCSSCEEEEEECTTSSEEEEE
T ss_pred ---cCC-CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee---------eeeecccceeEEEECCCCCEEEEE
Confidence 467 88999999999999999999999999999987 4433221 123488999999999999999999
Q ss_pred c-CCeEEEEeCCCCe-EE-EEeccc-cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 627 A-ETVITLWDPDRNV-LV-AVIGET-LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 627 ~-d~~i~iwd~~~~~-~~-~~l~~~-~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+ |++|++||+++++ .+ ..+.+| ...|.+++|+||++ |++++.|+. |++||+.
T Consensus 555 s~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~--i~lW~~~ 610 (611)
T 1nr0_A 555 SLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSN--IKFWNVP 610 (611)
T ss_dssp ETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSC--EEEEECC
T ss_pred ECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCC--EEEEecc
Confidence 8 9999999999865 33 577789 89999999999998 999999999 9999973
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-64 Score=556.90 Aligned_cols=518 Identities=19% Similarity=0.296 Sum_probs=423.4
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.++..|.||++.|++ ++|||||++||+++ |+.|+|||. +++++++|.+|.+.|++++|+||+ ++|++++.
T Consensus 7 ~e~~~L~GH~~~V~~-~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg-------~~las~~~ 77 (577)
T 2ymu_A 7 KERNRLEAHSSSVRG-VAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDG-------QTIASASD 77 (577)
T ss_dssp CEEEEECCCSSCEEE-EEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTS-------SEEEEEET
T ss_pred EEeeEECCCCCcEEE-EEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCC-------CEEEEEeC
Confidence 456678999999998 99999999999999 699999995 889999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccC--------------------
Q 040987 142 DGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT-------------------- 200 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 200 (762)
|++|+|||+ +++++..+..|. ++.+++| ++++.. ++....+......
T Consensus 78 d~~i~vWd~-~~~~~~~~~~~~~~v~~~~~--------s~d~~~---l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~ 145 (577)
T 2ymu_A 78 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAF--------SPDGQT---IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGV 145 (577)
T ss_dssp TSCEEEEET-TSCEEEEECCCSSCEEEEEE--------CTTSSE---EEEEETTSCEEEEETTCCEEEEECCCSSCEEEE
T ss_pred CCEEEEEEC-CCCEEEEEECCCCCEEEEEE--------CCCCCE---EEEEcCCCceeecccccceeeeccCCCCceeee
Confidence 999999995 678899998887 8888888 233321 2211100000000
Q ss_pred --cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeee
Q 040987 201 --KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 201 --~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
.......+.++.++.+++|+...... .....+...+.+++++|++++|++ +.|+.|++||... +. ....
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~-~~-----~~~~ 217 (577)
T 2ymu_A 146 AFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QL-----LQTL 217 (577)
T ss_dssp EECTTSSCEEEEETTSEEEEECTTSCEE--EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-CE-----EEEE
T ss_pred eeecCCccceecccccceeccccceeee--eeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCCC-cE-----EEEE
Confidence 00000014445566666666543332 355668889999999999999985 4789999999654 32 2566
Q ss_pred eccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 278 LHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
.+|...|.+++|+|++++|++++.|+.|++|+... +.+..+.+|...|.
T Consensus 218 ~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-------------------------------~~~~~~~~~~~~v~ 266 (577)
T 2ymu_A 218 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-------------------------------QLLQTLTGHSSSVN 266 (577)
T ss_dssp ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-------------------------------CEEEEECCCSSCEE
T ss_pred ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------------------------CEEEEEecCCCCEE
Confidence 78999999999999999999999999999999643 23467788999999
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++|+|+++.|++++.|+.|++||........+..|...|.+++|+|+++.+++++.|+.|++||... ..+..+.+|.
T Consensus 267 ~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~- 344 (577)
T 2ymu_A 267 GVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QHLQTLTGHS- 344 (577)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCS-
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCC-
Confidence 99999999999999999999999987655566788899999999999999999999999999999874 4556677766
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..+.+++|+|++++|++++.|+.+++||.. ++.+..+. .| ...|.+++|+|||++|++++
T Consensus 345 ---------~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~----~~------~~~v~~~~~s~dg~~l~~~~ 404 (577)
T 2ymu_A 345 ---------SSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT----GH------SSSVRGVAFSPDGQTIASAS 404 (577)
T ss_dssp ---------SCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEE----CC------SSCEEEEEECTTSSCEEEEE
T ss_pred ---------CCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEec----CC------CCCeEEEEECCCCCEEEEEe
Confidence 788999999999999999999999999964 44443332 22 66799999999999999999
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.|+.|++||.. ++....+ .+| ...|++++|+||+++|++++.|+.|++||.... ....
T Consensus 405 ---------~d~~v~~~~~~-~~~~~~~-----~~~-~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~-~~~~----- 462 (577)
T 2ymu_A 405 ---------DDKTVKLWNRN-GQLLQTL-----TGH-SSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ-LLQT----- 462 (577)
T ss_dssp ---------TTSEEEEECTT-CCEEEEE-----ECC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTSC-EEEE-----
T ss_pred ---------CCCEEEEEeCC-CCEEEEe-----cCC-CCCeEEEEECCCCCEEEEEcCCCEEEEEECCCC-EEEE-----
Confidence 88999999954 4333333 578 889999999999999999999999999997532 2222
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLS 676 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~ 676 (762)
...|...|++++|+||+++|++++ |+.|++||. +++++..+.+|...|++++|+|||++|++++.|+. |+
T Consensus 463 ------~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~--v~ 533 (577)
T 2ymu_A 463 ------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT--VK 533 (577)
T ss_dssp ------EECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSE--EE
T ss_pred ------EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCE--EE
Confidence 346889999999999999999998 999999995 58889999999999999999999999999999998 99
Q ss_pred EEECCCCceeeEEEEeec
Q 040987 677 VWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 677 vwd~~~~~~~~~~~~~~~ 694 (762)
+||. +++.+..+..|..
T Consensus 534 lwd~-~~~~~~~~~~h~~ 550 (577)
T 2ymu_A 534 LWNR-NGQLLQTLTGHSS 550 (577)
T ss_dssp EECT-TSCEEEEEECCSS
T ss_pred EEeC-CCCEEEEEcCCCC
Confidence 9996 6778777777654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-62 Score=538.09 Aligned_cols=506 Identities=16% Similarity=0.166 Sum_probs=403.8
Q ss_pred cCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEe
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWD 149 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd 149 (762)
.+++.+.+ ++|||||++||++.++.|+|||+++++.+.++.+|...|++++|+|+| .+||||+.|++|+|||
T Consensus 16 ~~~g~~~~-~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg-------~~lasg~~d~~v~lWd 87 (611)
T 1nr0_A 16 TARGTAVV-LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-------YYCASGDVHGNVRIWD 87 (611)
T ss_dssp CCTTCCCC-CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEE
T ss_pred cccCceeE-EeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCC-------cEEEEEeCCCCEEEeE
Confidence 44666775 999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred CCCcc--eEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 150 FSVPE--LLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 150 ~~~~~--~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
+.+++ ....+..|. ++.+++| +++++. ++....+ ....+.|++|| .++.
T Consensus 88 ~~~~~~~~~~~~~~~~~~v~~v~f--------s~dg~~---l~~~~~~---------------~~~~~~v~~wd--~~~~ 139 (611)
T 1nr0_A 88 TTQTTHILKTTIPVFSGPVKDISW--------DSESKR---IAAVGEG---------------RERFGHVFLFD--TGTS 139 (611)
T ss_dssp SSSTTCCEEEEEECSSSCEEEEEE--------CTTSCE---EEEEECC---------------SSCSEEEEETT--TCCB
T ss_pred CCCCcceeeEeecccCCceEEEEE--------CCCCCE---EEEEECC---------------CCceeEEEEee--CCCC
Confidence 97654 455677776 8899988 455542 3322100 01235777887 4555
Q ss_pred cceeeeccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 227 AGGVTLAEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
. ..+.+|...|.+++|+|++. .|+ ++.|+.|++||..+++.. ..+.+|...|.+++|+||+++||+++.|+.
T Consensus 140 ~-~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~-----~~l~~H~~~V~~v~fspdg~~las~s~D~~ 213 (611)
T 1nr0_A 140 N-GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-----STFGEHTKFVHSVRYNPDGSLFASTGGDGT 213 (611)
T ss_dssp C-BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred c-ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEe-----eeeccccCceEEEEECCCCCEEEEEECCCc
Confidence 4 45678999999999999997 466 557999999998877654 667799999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCC
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT 384 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~ 384 (762)
|++||+.+++...... .......+|.+.|.+++|+|+|++|++++.|++|++||+.+
T Consensus 214 i~lwd~~~g~~~~~~~-----------------------~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~ 270 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFE-----------------------DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 270 (611)
T ss_dssp EEEEETTTCCEEEECB-----------------------CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEEECCCCcEeeeec-----------------------cccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCC
Confidence 9999987765432100 00001227999999999999999999999999999999998
Q ss_pred CceeccCC----CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 385 GKKKFLPR----IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 385 ~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
++...... +......+.| +++.+++++.++.+++|+...++....+.+|. ..|.+++|+|++++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~----------~~v~~l~~spdg~~ 338 (611)
T 1nr0_A 271 LKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGHN----------KAITALSSSADGKT 338 (611)
T ss_dssp TEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSE
T ss_pred CceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCC----------CCEEEEEEeCCCCE
Confidence 87753222 2234556666 67899999999999999999998888888887 78999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++.|+.|++||+.++.....+ ... |...+.+++|++++ .+++++ .|+.+++|+..+..
T Consensus 339 l~s~s~D~~v~~Wd~~~~~~~~~~---~~~------h~~~v~~~~~s~~~-~l~s~s---------~d~~v~~w~~~~~~ 399 (611)
T 1nr0_A 339 LFSADAEGHINSWDISTGISNRVF---PDV------HATMITGIKTTSKG-DLFTVS---------WDDHLKVVPAGGSG 399 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEECS---SCS------CSSCEEEEEECTTS-CEEEEE---------TTTEEEEECSSSSS
T ss_pred EEEEeCCCcEEEEECCCCceeeec---ccC------CcceEEEEEECCCC-cEEEEE---------cCCceEEeecCCcc
Confidence 999999999999999987643321 122 26779999999876 566776 78899999976543
Q ss_pred cee-------------EEE----------------------EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 541 KEF-------------TLS----------------------TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 541 ~~~-------------~~~----------------------~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
... .+. ......| ...+.+++|+|||++|++++.|++|++||+.
T Consensus 400 ~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~-~~~v~~va~spdg~~lasgs~D~~v~lwd~~ 478 (611)
T 1nr0_A 400 VDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI-SYNSSCVALSNDKQFVAVGGQDSKVHVYKLS 478 (611)
T ss_dssp SCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEEEE
T ss_pred ccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec-CCCceEEEEeCCCCEEEEeCCCCeEEEEEcc
Confidence 210 000 0000124 5678999999999999999999999999997
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC-CeEEEE--eccccCceeEEEEeCCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR-NVLVAV--IGETLTPIMNMSFVGSS 661 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~-~~~~~~--l~~~~~~v~~~~~s~dg 661 (762)
++..... .. ..|...|++++|||||++|++++ |++|++||+.+ ++++.. +.+|...|.+++|+|||
T Consensus 479 ~~~~~~~---------~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg 548 (611)
T 1nr0_A 479 GASVSEV---------KT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDN 548 (611)
T ss_dssp TTEEEEE---------EE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTS
T ss_pred CCceeee---------ec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCC
Confidence 6542211 11 35789999999999999999998 99999999998 666554 34599999999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCc
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++|++++.|+. |++||++++.
T Consensus 549 ~~lasgs~D~~--v~lW~~~~~~ 569 (611)
T 1nr0_A 549 VRLATGSLDNS--VIVWNMNKPS 569 (611)
T ss_dssp SEEEEEETTSC--EEEEETTCTT
T ss_pred CEEEEEECCCc--EEEEECCCcc
Confidence 99999999999 9999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=575.65 Aligned_cols=537 Identities=17% Similarity=0.205 Sum_probs=455.9
Q ss_pred EEEEeecCCcceeEEEEecCCCeEEEEecCCcce-eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEee
Q 040987 32 HILIERKPRSRSFIFAVARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISS 109 (762)
Q Consensus 32 ~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~ 109 (762)
......++. +.++|+|+.||.|++||..+++. ..+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+.+++++.+
T Consensus 618 v~~~~~s~~--~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 694 (1249)
T 3sfz_A 618 VYHACFSQD--GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC-CAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694 (1249)
T ss_dssp EEEEEECTT--SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EEEEEECCC--CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEE-EEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence 334455555 66999999999999999998665 466899999998 99999999999999 79999999999999999
Q ss_pred ecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 110 LEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 110 l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+.+|...|.+++|+|+++. .++++++.|++|++||+.+++++..+..|. ++.+++| .+++.. +
T Consensus 695 ~~~~~~~v~~~~~~~~~~~-----~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~--------sp~~~~---l 758 (1249)
T 3sfz_A 695 YDEHSEQVNCCHFTNKSNH-----LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRF--------SPDDEL---L 758 (1249)
T ss_dssp EECCSSCEEEEEECSSSSC-----CEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEE--------CSSTTE---E
T ss_pred EcCCCCcEEEEEEecCCCc-----eEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEE--------ecCCCE---E
Confidence 9999999999999996420 478899999999999999999999998887 8888877 333332 1
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee------------ccCCCceEEEECCCCCEEEEEeCC
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL------------AEMKEPQVITISSSGKYFGIRKQR 256 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~------------~~~~~v~~~~~spdg~~la~~~~~ 256 (762)
++|+.||.|++||+.+++....... .....+.+++|+|+|++++++.++
T Consensus 759 -------------------~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~ 819 (1249)
T 3sfz_A 759 -------------------ASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKN 819 (1249)
T ss_dssp -------------------EEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETT
T ss_pred -------------------EEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCC
Confidence 6678999999999999877633321 123478899999999999999899
Q ss_pred eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 257 KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 257 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
.+.+||+.++.. ......+|...|.+++|+|+++++++++.||.|++|++.++.
T Consensus 820 ~v~~~d~~~~~~----~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~---------------------- 873 (1249)
T 3sfz_A 820 KVLLFDIHTSGL----LAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL---------------------- 873 (1249)
T ss_dssp EEEEEETTTCCE----EEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE----------------------
T ss_pred cEEEEEecCCCc----eeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc----------------------
Confidence 999999998874 334555899999999999999999999999999999997664
Q ss_pred cccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----------------------------
Q 040987 337 VRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK----------------------------- 387 (762)
Q Consensus 337 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~----------------------------- 387 (762)
....+.+|...|.+++|+|+|++|++++.|+.|++||+.+...
T Consensus 874 --------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 874 --------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp --------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred --------eeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 3467789999999999999999999999999999999754211
Q ss_pred ---------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 388 ---------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 388 ---------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
.........+.+++++|+++++++++.+|.|++|++.+++....+.+|. ..|.+++|+|++
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~----------~~v~~l~~s~dg 1015 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK----------KAVRHIQFTADG 1015 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS----------SCCCCEEECSSS
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC----------CceEEEEECCCC
Confidence 0011124578999999999999999999999999999999998888877 788999999999
Q ss_pred CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 459 GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
+++++++.||.|++||+.+++.... ..| ...+.+++|+|++. +++++ .|+.|++||+.+
T Consensus 1016 ~~l~s~~~dg~i~vwd~~~~~~~~~-----~~~------~~~v~~~~~~~~~~-l~~~~---------~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A 1016 KTLISSSEDSVIQVWNWQTGDYVFL-----QAH------QETVKDFRLLQDSR-LLSWS---------FDGTVKVWNVIT 1074 (1249)
T ss_dssp SCEEEECSSSBEEEEETTTTEEECC-----BCC------SSCEEEEEECSSSE-EEEEE---------SSSEEEEEETTT
T ss_pred CEEEEEcCCCEEEEEECCCCceEEE-----ecC------CCcEEEEEEcCCCc-EEEEE---------CCCcEEEEECCC
Confidence 9999999999999999998754321 122 67799999999775 45565 789999999999
Q ss_pred CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 539 QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
++....+ .+| ...|.+++|+|+++++++++.|++|++||+.++.....+ ..|...|++++|+|
T Consensus 1075 ~~~~~~~-----~~~-~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l-----------~~h~~~v~~~~~s~ 1137 (1249)
T 3sfz_A 1075 GRIERDF-----TCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHEL-----------KGHNGCVRCSAFSL 1137 (1249)
T ss_dssp TCCCEEE-----ECC-SSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCC-----------CCCSSCEEEEEECS
T ss_pred CceeEEE-----ccc-CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeee-----------ccCCCcEEEEEECC
Confidence 9877665 568 889999999999999999999999999999988766554 36889999999999
Q ss_pred CCcEEEEEc-CCeEEEEeCCCCeEEEEe---------ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 619 DGSVLAVAA-ETVITLWDPDRNVLVAVI---------GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 619 dg~~la~~~-d~~i~iwd~~~~~~~~~l---------~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
||++|++++ ||.|++||+.+++++..+ .+|.+.|.+++|+|||++|++++ |. |++||+.+++....
T Consensus 1138 dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~--v~vwd~~~g~~~~~ 1213 (1249)
T 3sfz_A 1138 DGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GY--LKWWNVATGDSSQT 1213 (1249)
T ss_dssp SSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SS--EEEBCSSSCBCCCC
T ss_pred CCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--Ce--EEEEECCCCceeee
Confidence 999999998 999999999999877665 67889999999999999999985 66 99999999988765
Q ss_pred EEEe
Q 040987 689 YLLH 692 (762)
Q Consensus 689 ~~~~ 692 (762)
+..+
T Consensus 1214 ~~~~ 1217 (1249)
T 3sfz_A 1214 FYTN 1217 (1249)
T ss_dssp CCCS
T ss_pred eecc
Confidence 5544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=509.17 Aligned_cols=506 Identities=12% Similarity=0.104 Sum_probs=420.8
Q ss_pred ecCCcceeEEEEecCCCeEEEEecCCc-----ceeeeecCccc-ccCCceeec--CCCEEEEEe-CCEEEEEEcccc---
Q 040987 37 RKPRSRSFIFAVARSSGLCRTAEYPAV-----NSKMIRGGRSY-VSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTG--- 104 (762)
Q Consensus 37 ~~~~~~~~~~a~~~~~g~i~~~~~~~~-----~~~~~~~h~~~-v~~~~~~s~--dg~~la~~~-~~~i~iwd~~~~--- 104 (762)
.+|. +.++|+++ ++.|++|++.++ ....+.+|... |.+ ++|+| ||++||+++ |+.|+|||+.++
T Consensus 26 ~spd--g~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~-~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~ 101 (615)
T 1pgu_A 26 YDPT--TNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTT-VKFSPIKGSQYLCSGDESGKVIVWGWTFDKES 101 (615)
T ss_dssp EETT--TTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEE-EEECSSTTCCEEEEEETTSEEEEEEEEEEGGG
T ss_pred ECCC--CCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEE-EEECcCCCCCEEEEecCCCEEEEEeCCCCccc
Confidence 3444 55888877 889999999976 56678999999 997 99999 999999999 799999999855
Q ss_pred -----eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC----CeEEEEeCCCcceEEEEEecc-ceEEEeecccc
Q 040987 105 -----LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD----GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLL 174 (762)
Q Consensus 105 -----~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d----~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~ 174 (762)
+.+..+.+|...|.+++|+|++ .+|++++.| +.|.+|| .++.+..+..|. .+.++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~---- 168 (615)
T 1pgu_A 102 NSVEVNVKSEFQVLAGPISDISWDFEG-------RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHL---- 168 (615)
T ss_dssp TEEEEEEEEEEECCSSCEEEEEECTTS-------SEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEE----
T ss_pred ccccccccchhhcccccEEEEEEeCCC-------CEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEE----
Confidence 7888999999999999999999 688888887 6888888 677888888877 7888877
Q ss_pred cCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC---CceEEEECCC-CCEE
Q 040987 175 RQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK---EPQVITISSS-GKYF 250 (762)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~spd-g~~l 250 (762)
.+++.. .+ ++++.|+.|++||+.+++.+ .....|.. .|.+++|+|+ +++|
T Consensus 169 ----~~~~~~--~l-------------------~~~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l 222 (615)
T 1pgu_A 169 ----KQSRPM--RS-------------------MTVGDDGSVVFYQGPPFKFS-ASDRTHHKQGSFVRDVEFSPDSGEFV 222 (615)
T ss_dssp ----CSSSSC--EE-------------------EEEETTTEEEEEETTTBEEE-EEECSSSCTTCCEEEEEECSTTCCEE
T ss_pred ----CCCCCc--EE-------------------EEEeCCCcEEEEeCCCccee-eeecccCCCCceEEEEEECCCCCCEE
Confidence 333321 01 56789999999999999888 55667888 9999999999 9999
Q ss_pred EEE-eCCeEEEEEccCchhhhheeeeee-e---ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccc
Q 040987 251 GIR-KQRKLLIWKVPDVEAERVVMRKIT-L---HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 251 a~~-~~~~i~iwd~~~~~~~~~~~~~~~-~---~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
+++ .++.|++||+.+++.. ... . .|...|.+++|+ ++++|++++.||.|++||+.+++..
T Consensus 223 ~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~--------- 287 (615)
T 1pgu_A 223 ITVGSDRKISCFDGKSGEFL-----KYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCV--------- 287 (615)
T ss_dssp EEEETTCCEEEEETTTCCEE-----EECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEE---------
T ss_pred EEEeCCCeEEEEECCCCCEe-----EEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEE---------
Confidence 854 6899999999988754 333 4 899999999999 9999999999999999999876543
Q ss_pred cccccccCCCCcccCCccccceeeecc----ccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEE
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWH----PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYF 400 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~ 400 (762)
..+..+ ...+.++.|+ +++++++++.|+.|++||+.+++.. .+..|...|.++
T Consensus 288 ---------------------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~ 345 (615)
T 1pgu_A 288 ---------------------QKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITAL 345 (615)
T ss_dssp ---------------------EEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEE
T ss_pred ---------------------EEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEE
Confidence 333333 4677888886 8899999999999999999987764 466788899999
Q ss_pred EeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC-
Q 040987 401 TESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR- 479 (762)
Q Consensus 401 ~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~- 479 (762)
+| |+ +++++.|+.|++|++. .+. .+|. ..|.+++| +++..+++++.|+.+++||+.+++
T Consensus 346 ~~-~~---l~~~~~dg~i~~w~~~---~~~--~~~~----------~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~ 405 (615)
T 1pgu_A 346 TV-NP---LISGSYDGRIMEWSSS---SMH--QDHS----------NLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF 405 (615)
T ss_dssp ET-TT---TEEEETTSCEEETTTT---EEE--CCCC----------SCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC
T ss_pred Ee-cC---cEEECCCCeEEEEEch---hhc--Cccc----------CceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc
Confidence 99 88 8889999999999988 222 4444 67888888 556788888888888888876432
Q ss_pred ---------------------------------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 480 ---------------------------------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 480 ---------------------------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.+..+. +...+.+++|+ ++++++++
T Consensus 406 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~--~~~l~~~~--------- 463 (615)
T 1pgu_A 406 GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-----------LNSPGSAVSLS--QNYVAVGL--------- 463 (615)
T ss_dssp SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSSCEEEEEEC--SSEEEEEE---------
T ss_pred cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-----------cCCCceEEEEc--CCEEEEee---------
Confidence 111111 15668899999 88999998
Q ss_pred c-eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc
Q 040987 527 S-LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 527 ~-d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
. ++.|++||+.++.... ..+.+| ...|++++|+|++++|++++.||.|++||+.+++....+. .
T Consensus 464 ~~d~~i~~~~~~~~~~~~----~~~~~~-~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~----------~ 528 (615)
T 1pgu_A 464 EEGNTIQVFKLSDLEVSF----DLKTPL-RAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW----------A 528 (615)
T ss_dssp TTTSCEEEEETTEEEEEE----ECSSCC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS----------C
T ss_pred cCCCeEEEEECCCccccc----cccCCc-cCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEee----------c
Confidence 7 8999999998764331 234678 8899999999999999999999999999999887765542 1
Q ss_pred cCCCCeEEEEEcC----------CCcEEEEEc-CCeEEEEeCCCC-eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 606 YKKKAMTAAAFSA----------DGSVLAVAA-ETVITLWDPDRN-VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 606 ~~~~~i~~~~~s~----------dg~~la~~~-d~~i~iwd~~~~-~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
.|...|++++|+| ++++|++++ |+.|++||+.++ +++..+.+|...|.+++|+||++ |++++.|+.
T Consensus 529 ~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~- 606 (615)
T 1pgu_A 529 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADAC- 606 (615)
T ss_dssp CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSC-
T ss_pred CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCce-
Confidence 2889999999999 999999998 999999999998 88889999999999999999999 999999998
Q ss_pred eEEEEECCC
Q 040987 674 QLSVWNMSK 682 (762)
Q Consensus 674 ~v~vwd~~~ 682 (762)
|++|++++
T Consensus 607 -v~iw~~~~ 614 (615)
T 1pgu_A 607 -IKRWNVVL 614 (615)
T ss_dssp -EEEEEEC-
T ss_pred -EEEEeeec
Confidence 99999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-57 Score=549.96 Aligned_cols=552 Identities=13% Similarity=0.112 Sum_probs=444.6
Q ss_pred eeEEEEecCCCeEEEEecCCccee-eeecCcccccCCceeec--CCCEEEEEe-CCEEEEEEcccceEEeeecCCcccee
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSN--DVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVT 118 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~--dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~ 118 (762)
+.++|+|+.||.|++||+.+++.. .+.+|...|.+ ++|+| ++.++++++ |+.|++||+.+++++.++.+|.+.|+
T Consensus 669 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~ 747 (1249)
T 3sfz_A 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNC-CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN 747 (1249)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE-EEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEE
T ss_pred CCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEE-EEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEE
Confidence 669999999999999999986654 56899999998 99999 556899998 79999999999999999999999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc--------------eEEEeecccccCCcccCCCC
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS--------------IFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~~~~~~~~ 184 (762)
+++|+|++ .+|++++.|++|++||+.+++....+..... +.+++| ++++..
T Consensus 748 ~~~~sp~~-------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~dg~~ 812 (1249)
T 3sfz_A 748 HCRFSPDD-------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSW--------SADGDK 812 (1249)
T ss_dssp EEEECSST-------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCB--------CTTSSE
T ss_pred EEEEecCC-------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEE--------CCCCCE
Confidence 99999999 6889999999999999999998887764431 112211 222221
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEc
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKV 263 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~ 263 (762)
+..+.++.+.+||+.++........+|...+.+++|+|++++++++ .++.|++|++
T Consensus 813 -----------------------l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~ 869 (1249)
T 3sfz_A 813 -----------------------IIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNI 869 (1249)
T ss_dssp -----------------------EEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEET
T ss_pred -----------------------EEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEc
Confidence 1123478999999999999877777999999999999999999865 7899999999
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeeccccccc-ccccccc-------cCCC
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMN-LNLMNNE-------EERP 335 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~ 335 (762)
.++... ....+|...|.+++|+|++++|++++.||.|++|++.+............ ...+... ....
T Consensus 870 ~~~~~~-----~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1249)
T 3sfz_A 870 DSRLKV-----ADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIR 944 (1249)
T ss_dssp TTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSS
T ss_pred CCCcee-----eecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCc
Confidence 988754 66779999999999999999999999999999999754321110000000 0000000 0000
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEec
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
..... ..........+...+.+++|+|+++++++++.+|.|++||+.+++.. ....|...|.+++|+|+++++++++.
T Consensus 945 ~~~~~-~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1023 (1249)
T 3sfz_A 945 GLQLI-AGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE 1023 (1249)
T ss_dssp SEEEE-EESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS
T ss_pred ceEEE-ecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC
Confidence 00000 00001111224567999999999999999999999999999988875 45678889999999999999999999
Q ss_pred CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCC
Q 040987 415 DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPG 494 (762)
Q Consensus 415 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 494 (762)
|+.|++||+.+++... +..|. ..+.+++|+|++ .+++++.|+.|++||+.+++....+...
T Consensus 1024 dg~i~vwd~~~~~~~~-~~~~~----------~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~------- 1084 (1249)
T 3sfz_A 1024 DSVIQVWNWQTGDYVF-LQAHQ----------ETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFTCH------- 1084 (1249)
T ss_dssp SSBEEEEETTTTEEEC-CBCCS----------SCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEECC-------
T ss_pred CCEEEEEECCCCceEE-EecCC----------CcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEccc-------
Confidence 9999999999987763 33444 789999999976 5788899999999999999877665432
Q ss_pred CCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+|+++++++++ .|+.|++||+.++.....+ .+| ...|++++|+|++++|++++
T Consensus 1085 ---~~~v~~~~~s~d~~~l~s~s---------~d~~v~iwd~~~~~~~~~l-----~~h-~~~v~~~~~s~dg~~lat~~ 1146 (1249)
T 3sfz_A 1085 ---QGTVLSCAISSDATKFSSTS---------ADKTAKIWSFDLLSPLHEL-----KGH-NGCVRCSAFSLDGILLATGD 1146 (1249)
T ss_dssp ---SSCCCCEEECSSSSSCEEEC---------CSSCCCEECSSSSSCSBCC-----CCC-SSCEEEEEECSSSSEEEEEE
T ss_pred ---CCcEEEEEECCCCCEEEEEc---------CCCcEEEEECCCcceeeee-----ccC-CCcEEEEEECCCCCEEEEEe
Confidence 66789999999999999999 8899999999988876655 578 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMN 654 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~ 654 (762)
.||.|++||+.+++...... ..........|...|++++|+|||++|++++ |.|++||+.+++.+..+..|...|.+
T Consensus 1147 ~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~-g~v~vwd~~~g~~~~~~~~~~~~i~~ 1223 (1249)
T 3sfz_A 1147 DNGEIRIWNVSDGQLLHSCA--PISVEEGTATHGGWVTDVCFSPDSKTLVSAG-GYLKWWNVATGDSSQTFYTNGTNLKK 1223 (1249)
T ss_dssp TTSCCCEEESSSSCCCCCCC--CCC-------CCSCCCEEEECTTSSCEEEES-SSEEEBCSSSCBCCCCCCCSSCCCCC
T ss_pred CCCEEEEEECCCCceEEEec--cccccccccccCceEEEEEECCCCCEEEECC-CeEEEEECCCCceeeeeeccCCcccE
Confidence 99999999999888765542 1112222345788999999999999999886 89999999999999999999999999
Q ss_pred EEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 655 MSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
++|+|||++|++++.||. |++|++.
T Consensus 1224 ~~~s~dg~~l~~~~~dg~--v~vw~l~ 1248 (1249)
T 3sfz_A 1224 IHVSPDFRTYVTVDNLGI--LYILQVL 1248 (1249)
T ss_dssp CEECSSSCCEEEECTTCC--EEEECCC
T ss_pred EEECCCCCEEEEecCCcE--EEEEeec
Confidence 999999999999999998 9999974
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=492.21 Aligned_cols=486 Identities=13% Similarity=0.142 Sum_probs=406.0
Q ss_pred ecCcccccCCceeecCCCEEEEEeCCEEEEEEcccc----eEEeeecCCccc-eeEEEEeC--CCCcccceeeeEEeeec
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTG----LQISSLEGHKAP-VTTVIVVP--ASTPATKILSYCWTASL 141 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~----~~~~~l~~h~~~-V~~v~~s~--~~~~~~~l~~~l~s~s~ 141 (762)
..|.+.|.+ ++|||||++||+++++.|.|||++++ +.+..+.+|... |++++|+| ++ .+|++++.
T Consensus 15 ~~~~~~v~~-~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~-------~~l~s~~~ 86 (615)
T 1pgu_A 15 STQRNFTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------QYLCSGDE 86 (615)
T ss_dssp CCCTTCCCC-CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------CEEEEEET
T ss_pred CCccCceeE-EEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCC-------CEEEEecC
Confidence 468899997 99999999999999999999999999 899999999999 99999999 99 78999999
Q ss_pred CCeEEEEeCCCc--------ceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCc
Q 040987 142 DGTIKYWDFSVP--------ELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTM 212 (762)
Q Consensus 142 d~~i~vWd~~~~--------~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 212 (762)
|++|++||+.++ +.+..+..+. ++.+++| +++++. ++ +++.
T Consensus 87 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~---l~-------------------~~~~ 136 (615)
T 1pgu_A 87 SGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW--------DFEGRR---LC-------------------VVGE 136 (615)
T ss_dssp TSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE--------CTTSSE---EE-------------------EEEC
T ss_pred CCEEEEEeCCCCcccccccccccchhhcccccEEEEEE--------eCCCCE---EE-------------------Eecc
Confidence 999999999855 6777777666 8888877 444432 22 2333
Q ss_pred c----ccEEEEecCCccccceeeeccCCCceEEEECCCCC-EEE-EEeCCeEEEEEccCchhhhheeeeeeeccCc---C
Q 040987 213 N----GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK-YFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTK---K 283 (762)
Q Consensus 213 d----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~-~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~---~ 283 (762)
+ +.|.+|| .++.. ....+|...|.+++|+|+++ +++ ++.|+.|++||+.+++.. ..+..|.. .
T Consensus 137 ~~~~~~~v~~~d--~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~-----~~~~~~~~~~~~ 208 (615)
T 1pgu_A 137 GRDNFGVFISWD--SGNSL-GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS-----ASDRTHHKQGSF 208 (615)
T ss_dssp CSSCSEEEEETT--TCCEE-EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE-----EEECSSSCTTCC
T ss_pred CCCCccEEEEEE--CCCcc-eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCccee-----eeecccCCCCce
Confidence 3 6888888 45555 56678999999999999998 566 557899999999988754 56678888 9
Q ss_pred eEEEEEcCC-CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee-e---ccccceeE
Q 040987 284 LTVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-H---WHPSEVSV 358 (762)
Q Consensus 284 v~~~~~sp~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~v~~ 358 (762)
|.+++|+|+ +++|++++.||.|++||+.+++.. ..+ . .|...|.+
T Consensus 209 v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL------------------------------KYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE------------------------------EECCBTTBCCCSCEEE
T ss_pred EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe------------------------------EEecccccccCCceEE
Confidence 999999999 999999999999999999776433 444 4 79999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-----CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-----GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
++|+ ++++|++++.|+.|++||+.+++....... ...+.++.++ +++++++++.++.|++||+.+++.+..+.
T Consensus 259 ~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 259 LSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred EEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 9999 999999999999999999998887543222 3578888886 89999999999999999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..|.+++| |+ +++++.||.|++|++. .+. ..| ...|.+++| +++..+
T Consensus 337 ~~~----------~~v~~~~~-~~---l~~~~~dg~i~~w~~~------~~~---~~~------~~~v~~~~~-~~~~~l 386 (615)
T 1pgu_A 337 GHN----------KGITALTV-NP---LISGSYDGRIMEWSSS------SMH---QDH------SNLIVSLDN-SKAQEY 386 (615)
T ss_dssp CCS----------SCEEEEET-TT---TEEEETTSCEEETTTT------EEE---CCC------CSCEEEEEC-CSTTCC
T ss_pred CCC----------CCEEEEEe-cC---cEEECCCCeEEEEEch------hhc---Ccc------cCceEEEEE-CCCcEE
Confidence 877 78999999 88 9999999999999987 111 222 667888888 666777
Q ss_pred EEEeeeccccCCCceeEEEEEEecCC----------------------------------CceeEEEEEeecCCCCCceE
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQ----------------------------------NKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~----------------------------------~~~~~~~~~~~~~h~~~~v~ 559 (762)
++++ .|+.+++|++.+. +....+ .| ...+.
T Consensus 387 ~~~~---------~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~ 450 (615)
T 1pgu_A 387 SSIS---------WDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV------RL-NSPGS 450 (615)
T ss_dssp EEEE---------TTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE------EC-SSCEE
T ss_pred EEEe---------CCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec------cc-CCCce
Confidence 7777 6777777776542 222222 25 67899
Q ss_pred EEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC
Q 040987 560 AVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD 637 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~ 637 (762)
+++|+ +++|++++. |+.|++||+.++.... .....|...|++++|+|+|++|++++ |+.|++||+.
T Consensus 451 ~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 518 (615)
T 1pgu_A 451 AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----------DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQ 518 (615)
T ss_dssp EEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----------ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred EEEEc--CCEEEEeecCCCeEEEEECCCccccc----------cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCC
Confidence 99999 889999999 9999999998875531 12346889999999999999999998 9999999999
Q ss_pred CCeEEEEecc-ccCceeEEEEeC----------CCCEEEEEEcCCCCeEEEEECCCC-ceeeEEEEe
Q 040987 638 RNVLVAVIGE-TLTPIMNMSFVG----------SSEYLVATSWGSKPQLSVWNMSKL-SISWSYLLH 692 (762)
Q Consensus 638 ~~~~~~~l~~-~~~~v~~~~~s~----------dg~~l~s~~~d~~~~v~vwd~~~~-~~~~~~~~~ 692 (762)
+++++..+.+ |...|.+++|+| ++++|++++.|+. |++||+.++ +....+..|
T Consensus 519 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~--i~iw~~~~~~~~~~~~~~h 583 (615)
T 1pgu_A 519 SREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN--IFIYSVKRPMKIIKALNAH 583 (615)
T ss_dssp TTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC--EEEEESSCTTCCEEETTSS
T ss_pred CCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCc--EEEEECCCCceechhhhcC
Confidence 9999999988 999999999999 9999999999998 999999998 555554444
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-55 Score=502.69 Aligned_cols=579 Identities=10% Similarity=0.030 Sum_probs=410.2
Q ss_pred EEEEeecCCcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeee
Q 040987 32 HILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSL 110 (762)
Q Consensus 32 ~~~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l 110 (762)
....+.+|. +.++|+|+.||.|++|+..+.+......|...|.+ ++|+| |++||+++ |++|+|||+++++++.++
T Consensus 20 V~~lafspd--g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~-l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~ 95 (902)
T 2oaj_A 20 PIAAAFDFT--QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKE-MRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV 95 (902)
T ss_dssp EEEEEEETT--TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEE-EEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred cEEEEECCC--CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEE-EEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence 344555665 56999999999999999998887777789999997 99999 88999999 799999999999999998
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE------------Eecc-ceEEEeecccccCC
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI------------DVKF-SIFSMVIPSLLRQP 177 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~------------~~~~-~v~~~~~~~~~~~~ 177 (762)
. |.+.|++++|+|++ .+|++|+.||+|++||+.++++. .+ ..|. +|.+++|
T Consensus 96 ~-~~~~V~~v~~sp~g-------~~l~sgs~dg~V~lwd~~~~~~~-~~~i~~~~~~~~~~~~h~~~V~sl~~------- 159 (902)
T 2oaj_A 96 F-VPGKITSIDTDASL-------DWMLIGLQNGSMIVYDIDRDQLS-SFKLDNLQKSSFFPAARLSPIVSIQW------- 159 (902)
T ss_dssp E-CSSCEEEEECCTTC-------SEEEEEETTSCEEEEETTTTEEE-EEEECCHHHHHTCSSSCCCCCCEEEE-------
T ss_pred c-CCCCEEEEEECCCC-------CEEEEEcCCCcEEEEECCCCccc-cceeccccccccccccCCCCeEEEEE-------
Confidence 6 67899999999999 78999999999999999988764 22 1222 4555544
Q ss_pred cccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee-----------------ccCCCceE
Q 040987 178 AQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL-----------------AEMKEPQV 240 (762)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~-----------------~~~~~v~~ 240 (762)
.+.+. ..+ ++|+.|+.| +||+++++.++.... .|...|.+
T Consensus 160 -------------sp~~~-~~l--------~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~ 216 (902)
T 2oaj_A 160 -------------NPRDI-GTV--------LISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQ 216 (902)
T ss_dssp -------------ETTEE-EEE--------EEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEE
T ss_pred -------------ccCCC-CEE--------EEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEE
Confidence 22110 011 567899999 999999887733221 23578999
Q ss_pred EEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeee--ee-------------ccCcCeEEEEEc----CCC-cEEEEe
Q 040987 241 ITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKI--TL-------------HHTKKLTVLAFH----PTQ-RIVAAG 299 (762)
Q Consensus 241 ~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~--~~-------------~~~~~v~~~~~s----p~~-~~l~~~ 299 (762)
++|+|||++||++ .|+.|++||+.+++.. ..+.+ .. .|...|.+++|+ |++ .+|++|
T Consensus 217 v~fspdg~~lasgs~Dg~i~lWd~~~g~~~--~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 217 SLYHPNSLHIITIHEDNSLVFWDANSGHMI--MARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp EEECTTSSEEEEEETTCCEEEEETTTCCEE--EEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EEEcCCCCEEEEEECCCeEEEEECCCCcEE--EEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 9999999999855 7999999999987753 11011 01 135579999995 544 567777
Q ss_pred ecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEec----------
Q 040987 300 DVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSS---------- 363 (762)
Q Consensus 300 ~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~---------- 363 (762)
+.+ +.+.+|++.....+.......... .....+....+. .|...|.++.+.+
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~ 362 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKN------------YYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCH 362 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHH------------HHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTB
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhh------------hhcCccceEEEecCCCCceEEEEECCCCCCCcCCCC
Confidence 665 378888852110000000000000 000001122222 3567788888755
Q ss_pred CCCEEEEEecCCeEEEEecCCCceec--------cCCCCCC----------------------------------eEEEE
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKF--------LPRIGSP----------------------------------LLYFT 401 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~--------~~~~~~~----------------------------------v~~~~ 401 (762)
+...+++++.|++|++||+.++.... +..+... +..++
T Consensus 363 d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~ 442 (902)
T 2oaj_A 363 NPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKL 442 (902)
T ss_dssp SCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCC
T ss_pred CceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccc
Confidence 34478888999999999997764321 1222233 33455
Q ss_pred eCCCCCeEEEEecCCcEEEEEcCCceEE--EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 402 ESPDPSLSSISCADNQVHLLKMPSMEII--RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 402 ~s~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
|+|++++|++++.|++|++||+.++... ..+.... .......|...|.+++|+||+++||+++.||+|++||+.+++
T Consensus 443 ~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l-~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~ 521 (902)
T 2oaj_A 443 PAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNL-SRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ 521 (902)
T ss_dssp CCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEH-HHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred ccccCcEEEEecCCCcEEEEECCCccccCCceEEeec-hhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence 6799999999999999999999876421 0010000 000001234789999999999999999999999999998763
Q ss_pred cee-----------------------------------------eEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 480 GIS-----------------------------------------EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 480 ~~~-----------------------------------------~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
... ...... ..|...|++++|+||| +||+++
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l------~~h~~~V~svafSpdG-~lAsgs- 593 (902)
T 2oaj_A 522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV------HANKGKTSAINNSNIG-FVGIAY- 593 (902)
T ss_dssp C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE------CCCSCSEEEEEECBTS-EEEEEE-
T ss_pred ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE------EcCCCcEEEEEecCCc-EEEEEe-
Confidence 210 001111 2247889999999999 999999
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeec-CCCCCceEEEEEc-----CCC---CeEEEEeCCCcEEEEEc---cc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE-PHRDAGISAVAFH-----PNR---RAAVSSSYGGDFKVWIC---ND 586 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~h~~~~v~~~~~s-----pd~---~~l~~~~~dg~i~iwd~---~~ 586 (762)
.|++|++||+++...+.......+. +| ...|++++|+ ||| ++|++++.|++|++||+ .+
T Consensus 594 --------~D~tv~lwd~~~~~~~~~~~~~~~~~gh-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~ 664 (902)
T 2oaj_A 594 --------AAGSLMLIDRRGPAIIYMENIREISGAQ-SACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG 664 (902)
T ss_dssp --------TTSEEEEEETTTTEEEEEEEGGGTCSSC-CCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred --------CCCcEEEEECCCCeEEEEeehhHhcccc-ccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence 8999999998876554321111233 78 8999999999 885 89999999999999999 66
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEE-Ec----------------------CCCcEEEEEcCCeEEEEeCCCCeEEE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAA-FS----------------------ADGSVLAVAAETVITLWDPDRNVLVA 643 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~s----------------------~dg~~la~~~d~~i~iwd~~~~~~~~ 643 (762)
++....+. .+.. ..+...|..++ |+ ++|.+|+++ +..|+||++.++++..
T Consensus 665 g~~~~~~~-----~~~~-~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~~k~~~ 737 (902)
T 2oaj_A 665 GKFDVQLM-----DITN-VTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGKSKSTH 737 (902)
T ss_dssp GCEEEEEE-----EEEE-CCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTCCCEEE
T ss_pred CcEEEEec-----Ccee-cCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcccccee
Confidence 66544432 1111 11345666665 55 556555555 8899999999999988
Q ss_pred EeccccCceeEE---E------EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 644 VIGETLTPIMNM---S------FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 644 ~l~~~~~~v~~~---~------~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
....|...+.++ . |++++..|++.+.||. |++|++.+++.+..+..+..
T Consensus 738 k~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~--i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 738 KGFKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGH--LRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp EECSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSE--EEEEETTTCCEEEEEECSSC
T ss_pred eEcccceeeeEEEEEEeccccccccCceEEEEEeCCCc--EEEEECcchHHHhhccCCcc
Confidence 776676666666 5 7899999999999998 99999999999988887443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-55 Score=501.37 Aligned_cols=544 Identities=12% Similarity=0.084 Sum_probs=393.2
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
....||.+.|.+ ++|+|||++||+|+ ||.|+|||..+++.+..+. |...|.+++|+| + .+|++++.|++
T Consensus 11 ~~~~gh~~~V~~-lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g-------~~L~S~s~D~~ 80 (902)
T 2oaj_A 11 TNKYGMSSKPIA-AAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-G-------IYLVVINAKDT 80 (902)
T ss_dssp EEEEECSSCEEE-EEEETTTTEEEEEETTSEEEEECSTTCEEEEECS-SCCCEEEEEEET-T-------TEEEEEETTCE
T ss_pred ccccCCCCCcEE-EEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-C-------CEEEEEECcCe
Confidence 345699999997 99999999999999 7999999998888777664 788999999999 7 68899999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+++++..+..+..+.+++| .+++.. + ++|+.||.|++||++++
T Consensus 81 v~lWd~~~~~~~~~~~~~~~V~~v~~--------sp~g~~---l-------------------~sgs~dg~V~lwd~~~~ 130 (902)
T 2oaj_A 81 VYVLSLYSQKVLTTVFVPGKITSIDT--------DASLDW---M-------------------LIGLQNGSMIVYDIDRD 130 (902)
T ss_dssp EEEEETTTCSEEEEEECSSCEEEEEC--------CTTCSE---E-------------------EEEETTSCEEEEETTTT
T ss_pred EEEEECCCCcEEEEEcCCCCEEEEEE--------CCCCCE---E-------------------EEEcCCCcEEEEECCCC
Confidence 99999999999999986668888877 334332 1 66789999999999988
Q ss_pred cccc----------eeeeccCCCceEEEECCCC-CEEEE-EeCCeEEEEEccCchhhhheeeeeee--------------
Q 040987 225 RLAG----------GVTLAEMKEPQVITISSSG-KYFGI-RKQRKLLIWKVPDVEAERVVMRKITL-------------- 278 (762)
Q Consensus 225 ~~~~----------~~~~~~~~~v~~~~~spdg-~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~-------------- 278 (762)
+... ....+|.+.|.+++|+|++ ..|++ +.|+.| +||+.+++.. ..+.
T Consensus 131 ~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~-----~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 131 QLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIK-----QSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp EEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEE-----EEECCCBCTTCCCSTTCC
T ss_pred ccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceE-----EEEecccCCcCCCccccc
Confidence 7531 1235688999999999964 56664 478999 9999987653 2222
Q ss_pred ----ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 279 ----HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 279 ----~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.|...|.+++|+|+|++||+++.||.|++||+.+++.+........ ..... ..... ..-..|..
T Consensus 205 ~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~------~~~~~-----~~~~~-~~~~~~~~ 272 (902)
T 2oaj_A 205 KTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFET------EINVP-----QPDYI-RDSSTNAA 272 (902)
T ss_dssp CTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCS------CTTSC-----CTTCC-CCCSSCCC
T ss_pred ccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccc------ccCCC-----CCcCC-CCCccccC
Confidence 2457899999999999999999999999999988765431000000 00000 00000 00002456
Q ss_pred ceeEEEEec----CC-CEEEEEecC-----CeEEEEecC------------------CCcee--ccCCCCCCeEEEEeCC
Q 040987 355 EVSVLIFSS----DG-AYLYSGGKE-----GVLVVWQLD------------------TGKKK--FLPRIGSPLLYFTESP 404 (762)
Q Consensus 355 ~v~~~~~s~----~g-~~l~s~~~d-----g~i~~wd~~------------------~~~~~--~~~~~~~~v~~~~~s~ 404 (762)
.|.+++|++ ++ ..|++++.+ ..+.+|++. +.+.. ....+...+..+.+.+
T Consensus 273 ~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 352 (902)
T 2oaj_A 273 KISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIP 352 (902)
T ss_dssp EEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECC
T ss_pred CeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECC
Confidence 799999964 43 467777665 378899853 11222 1224567888888765
Q ss_pred ----------CCCeEEEEecCCcEEEEEcCCceEEEE-------EccCCC------------------------CCCCCC
Q 040987 405 ----------DPSLSSISCADNQVHLLKMPSMEIIRS-------ISGIKL------------------------PCPLPE 443 (762)
Q Consensus 405 ----------~~~~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~------------------------~~~~~~ 443 (762)
+...+++++.|+.+++|++.++..... +..|.. ......
T Consensus 353 ~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~ 432 (902)
T 2oaj_A 353 RQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLK 432 (902)
T ss_dssp SSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCC
T ss_pred CCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCccc
Confidence 344788888999999999977644322 111110 000112
Q ss_pred cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee--eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS--EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
.|...+..++|+|++++|++++.|++|++||+.++.... .+..... ......|...|.+++|+|||++||+++
T Consensus 433 G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~-~~~~~~h~~~V~svafspdg~~LAsgs---- 507 (902)
T 2oaj_A 433 GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLS-RTLNKAKELAVDKISFAAETLELAVSI---- 507 (902)
T ss_dssp CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHH-HHTTCSSSCCEEEEEEETTTTEEEEEE----
T ss_pred CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeech-hhcCCCCCCceeEEEecCCCCeEEEEe----
Confidence 233456677889999999999999999999998874321 1111110 000012367899999999999999999
Q ss_pred ccCCCceeEEEEEEecCCCcee---------------------------------------E-EEEEeecCCCCCceEEE
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEF---------------------------------------T-LSTIVYEPHRDAGISAV 561 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~---------------------------------------~-~~~~~~~~h~~~~v~~~ 561 (762)
.|++|++|++.+++... . .....+.+| .+.|+++
T Consensus 508 -----~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-~~~V~sv 581 (902)
T 2oaj_A 508 -----ETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-KGKTSAI 581 (902)
T ss_dssp -----TTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC-SCSEEEE
T ss_pred -----cCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC-CCcEEEE
Confidence 89999999998763200 0 011235678 9999999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc-cCCCCeEEEEEc-----CCC---cEEEEEc-CCeE
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS-YKKKAMTAAAFS-----ADG---SVLAVAA-ETVI 631 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~s-----~dg---~~la~~~-d~~i 631 (762)
+||||| +||+|+.|++|++||+.++..+... .+ .... +|...|++++|| ||| ++|++|+ |++|
T Consensus 582 afSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~-----~~-~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv 654 (902)
T 2oaj_A 582 NNSNIG-FVGIAYAAGSLMLIDRRGPAIIYME-----NI-REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV 654 (902)
T ss_dssp EECBTS-EEEEEETTSEEEEEETTTTEEEEEE-----EG-GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE
T ss_pred EecCCc-EEEEEeCCCcEEEEECCCCeEEEEe-----eh-hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE
Confidence 999999 9999999999999999876553211 01 1232 688999999999 886 8999998 9999
Q ss_pred EEEeC---CCCeEEEEecccc-----CceeEEE-Ee----------------------CCCCEEEEEEcCCCCeEEEEEC
Q 040987 632 TLWDP---DRNVLVAVIGETL-----TPIMNMS-FV----------------------GSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 632 ~iwd~---~~~~~~~~l~~~~-----~~v~~~~-~s----------------------~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
++||+ .+|++...+.+|. ++|.+++ |+ +++..|+++ +.. |++|++
T Consensus 655 ~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~--ir~~~~ 730 (902)
T 2oaj_A 655 ITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDD--IRLITL 730 (902)
T ss_dssp EEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSE--EEEECT
T ss_pred EEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccc--eEEEeC
Confidence 99999 8899988888774 6788777 76 455555554 544 999999
Q ss_pred CCCceeeEE
Q 040987 681 SKLSISWSY 689 (762)
Q Consensus 681 ~~~~~~~~~ 689 (762)
.+++.....
T Consensus 731 ~~~k~~~k~ 739 (902)
T 2oaj_A 731 GKSKSTHKG 739 (902)
T ss_dssp TCCCEEEEE
T ss_pred ccccceeeE
Confidence 998776433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-49 Score=456.15 Aligned_cols=462 Identities=15% Similarity=0.142 Sum_probs=375.2
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.+ ++|||||++||+++ +|.|+|||+.+++.+.++.+|.+.|++++|+|++ .+|++++.|
T Consensus 5 ~~~~~~~h~~~v~~-i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~d 76 (814)
T 3mkq_A 5 IKKTFSNRSDRVKG-IDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARK-------NWIIVGSDD 76 (814)
T ss_dssp CEEEEEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-------TEEEEEETT
T ss_pred cceeeecCCCceEE-EEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCC-------CEEEEEeCC
Confidence 34567999999998 99999999999999 7999999999999999999999999999999999 688999999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++.+..+..|. .+.+++| .+++.. + ++++.||.|++||+
T Consensus 77 g~i~vw~~~~~~~~~~~~~~~~~v~~~~~--------s~~~~~---l-------------------~~~~~dg~i~vw~~ 126 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFEAHPDYIRSIAV--------HPTKPY---V-------------------LSGSDDLTVKLWNW 126 (814)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEE--------CSSSSE---E-------------------EEEETTSEEEEEEG
T ss_pred CeEEEEECCCCcEEEEEecCCCCEEEEEE--------eCCCCE---E-------------------EEEcCCCEEEEEEC
Confidence 999999999999999999887 7888877 333332 1 56789999999999
Q ss_pred CCccccceeeeccCCCceEEEECC-CCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISS-SGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVA 297 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~ 297 (762)
.++........+|...|.+++|+| +++.|++ +.|+.|++||+.++... ......+...+.+++|+| ++++|+
T Consensus 127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCS----EEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcce----eEEecCCCCCEEEEEEEECCCCCEEE
Confidence 998555577888999999999999 8888875 47899999999887643 233445558999999999 999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeE
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i 377 (762)
+++.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.||.|
T Consensus 203 ~~~~dg~i~~~d~~~~~------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v 252 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKS------------------------------CVATLEGHMSNVSFAVFHPTLPIIISGSEDGTL 252 (814)
T ss_dssp EECTTSEEEEEETTTTE------------------------------EEEEEECCSSCEEEEEECSSSSEEEEEETTSCE
T ss_pred EEeCCCEEEEEECCCCc------------------------------EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeE
Confidence 99999999999987664 346778899999999999999999999999999
Q ss_pred EEEecCCCcee-ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 378 VVWQLDTGKKK-FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 378 ~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
++||+.+++.. .+..+...+.+++|+|++.. +++++.++.+.+|++... ...+.++
T Consensus 253 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~ 310 (814)
T 3mkq_A 253 KIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND----------------------EPTLSLD 310 (814)
T ss_dssp EEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCC----------------------SCCEEEC
T ss_pred EEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCC----------------------CceeEEC
Confidence 99999998875 45566789999999999874 355556788899987532 2457788
Q ss_pred CCCCEEEEeecCce---EEE------EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 456 HDGGLVALRAENYC---IHF------YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 456 ~~~~~l~~~~~dg~---i~i------~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
|+++.+++++.+.. +.. |++..+............ +...+.+++|+|+|+++++++
T Consensus 311 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~spdg~~la~~~--------- 375 (814)
T 3mkq_A 311 PVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS------VDVFPQSLAHSPNGRFVTVVG--------- 375 (814)
T ss_dssp SSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECC------CSSCCSEEEECTTSSEEEEEE---------
T ss_pred CCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCC------CccCCceeEECCCCCEEEEec---------
Confidence 99988888765532 221 222222222111111111 145688999999999999984
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
++.+.+|++..... .+ .+.+.+++|+|+++++++++.++.+++|+.. .+
T Consensus 376 -~~~~~i~~~~~~~~----------~~-~~~i~~~~~spdg~~la~~~~~g~v~l~~~~-------------------~~ 424 (814)
T 3mkq_A 376 -DGEYVIYTALAWRN----------KA-FGKCQDFVWGPDSNSYALIDETGQIKYYKNF-------------------KE 424 (814)
T ss_dssp -TTEEEEEETTTTEE----------EE-EEECSEEEECTTSSCEEEECTTCCEEEEETT-------------------EE
T ss_pred -CCEEEEEECccccc----------cC-CCceEEEEEeCCCCeEEEEeCCCcEEEEECC-------------------CC
Confidence 57899999764321 12 4578899999999999999999999999632 23
Q ss_pred CCCCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 607 KKKAMTAAAFSADG---SVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 607 ~~~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
|...+.+++|+||| ++|++++ |+.|++||+.+++++..+.+|.. .+.|+|||++|++++
T Consensus 425 ~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~ 487 (814)
T 3mkq_A 425 VTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVN 487 (814)
T ss_dssp CTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEE
T ss_pred ccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEE
Confidence 56678889999998 5677766 99999999999999999987764 899999999999993
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=414.37 Aligned_cols=512 Identities=14% Similarity=0.180 Sum_probs=386.9
Q ss_pred EEeecCCcceeEEEEecCCCeEEEEecCCcce-eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeec
Q 040987 34 LIERKPRSRSFIFAVARSSGLCRTAEYPAVNS-KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE 111 (762)
Q Consensus 34 ~~~~~~~~~~~~~a~~~~~g~i~~~~~~~~~~-~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~ 111 (762)
....+|. +.++|+|+.||.|++||+.+++. ..+.+|...|.+ ++|+|||++||+++ +|.|+|||+.+++.+.++.
T Consensus 18 ~i~~sp~--~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 94 (814)
T 3mkq_A 18 GIDFHPT--EPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRA-GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE 94 (814)
T ss_dssp EEEECSS--SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE-EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEECCC--CCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEE-EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 3344554 67999999999999999987655 466889999997 99999999999999 6999999999999999999
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc-ceEEEEEecc-ceEEEeecccccCCccc-CCCCCceE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP-ELLKTIDVKF-SIFSMVIPSLLRQPAQS-DEKPPKLF 188 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~~~~-~~~~~~~~ 188 (762)
+|.+.|++++|+|++ .+|++++.|++|++||+.++ .....+..|. ++.+++| .+ ++.
T Consensus 95 ~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~--------~p~~~~----- 154 (814)
T 3mkq_A 95 AHPDYIRSIAVHPTK-------PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF--------NPKDPS----- 154 (814)
T ss_dssp CCSSCEEEEEECSSS-------SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEE--------ETTEEE-----
T ss_pred cCCCCEEEEEEeCCC-------CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEE--------EcCCCC-----
Confidence 999999999999999 68889999999999999987 6777777776 7777765 11 111
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC--CCCEEEEE-eCCeEEEEEccC
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS--SGKYFGIR-KQRKLLIWKVPD 265 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp--dg~~la~~-~~~~i~iwd~~~ 265 (762)
.+ ++++.||.|++||+.++.........+...+.+++|+| ++++|+++ .++.|++||+.+
T Consensus 155 ---------~l--------~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~ 217 (814)
T 3mkq_A 155 ---------TF--------ASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217 (814)
T ss_dssp ---------EE--------EEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT
T ss_pred ---------EE--------EEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 11 56789999999999998888666666669999999999 99999865 789999999998
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (762)
++.. ....+|...|.+++|+|++++|++++.||.|++||+.+++ .
T Consensus 218 ~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~------------------------------~ 262 (814)
T 3mkq_A 218 KSCV-----ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK------------------------------V 262 (814)
T ss_dssp TEEE-----EEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCS------------------------------E
T ss_pred CcEE-----EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc------------------------------E
Confidence 7754 5667899999999999999999999999999999997664 3
Q ss_pred ceeeeccccceeEEEEecCCCE-EEEEecCCeEEEEecCCCce----------ec-------------------------
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKK----------KF------------------------- 389 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~----------~~------------------------- 389 (762)
...+..|...+.+++|+|++.. +++++.++.+.+|++..... ..
T Consensus 263 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (814)
T 3mkq_A 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQD 342 (814)
T ss_dssp EEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSS
T ss_pred EEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccC
Confidence 4567778889999999999873 24444567788888754321 00
Q ss_pred ---------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 390 ---------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 390 ---------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
...+...+.+++|+|+|+++++++ ++.+.+|++........ +.+.+++|+|++++
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~~---------------~~i~~~~~spdg~~ 406 (814)
T 3mkq_A 343 EPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKAF---------------GKCQDFVWGPDSNS 406 (814)
T ss_dssp SCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEE---------------EECSEEEECTTSSC
T ss_pred ccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccCC---------------CceEEEEEeCCCCe
Confidence 012334578999999999999987 89999999875543321 56789999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEec
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
+++++.++.+++|+...+ + ...+.+++|+|++ .+|++++ .++.|++||+.
T Consensus 407 la~~~~~g~v~l~~~~~~------------~------~~~v~~~~~s~dg~~~~~l~~~~---------~d~~v~~~d~~ 459 (814)
T 3mkq_A 407 YALIDETGQIKYYKNFKE------------V------TSWSVPMHSAIDRLFSGALLGVK---------SDGFVYFFDWD 459 (814)
T ss_dssp EEEECTTCCEEEEETTEE------------C------TTCCCCCSSCCCEEECSSSEEEE---------ETTEEEEECTT
T ss_pred EEEEeCCCcEEEEECCCC------------c------cceEEcCCcCccceecceEEEEe---------cCCEEEEEECC
Confidence 999999999999963211 1 4457788899998 6888887 78999999999
Q ss_pred CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE------eCCCcEEEEEccccccccccc----------CCceeee
Q 040987 538 TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS------SYGGDFKVWICNDELQQKDLQ----------SSGWSCH 601 (762)
Q Consensus 538 ~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~------~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~ 601 (762)
+++....+ ..| . ..++|+|||++|+++ +.++ +.+|..........+. .......
T Consensus 460 ~~~~~~~~-----~~~-~---~~v~~s~dg~~la~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 529 (814)
T 3mkq_A 460 NGTLVRRI-----DVN-A---KDVIWSDNGELVMIVNTNSNGDEAS-GYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVL 529 (814)
T ss_dssp TCCEEEEE-----SSC-E---EEEEECTTSSEEEEEECCCSSCSCS-EEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEE
T ss_pred cCcEEEEE-----ecC-C---CEEEEcCCCCEEEEEEcCcccCCce-EEEEEechHHhhhhhhccCCccccchhhheeee
Confidence 98776655 334 2 389999999999999 5554 4444332211111100 0001110
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
. .....+.+..|. +..++..+ .+.+..+- .++ ...+.....++..+.|.+++..++....++. +..|++
T Consensus 530 ~---~~~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~--~~~~~l 599 (814)
T 3mkq_A 530 Y---ELSESITSGKWV--GDVFIFTTATNRLNYFV--GGK-TYNLAHYTKEMYLLGYLARDNKVYLADREVH--VYGYEI 599 (814)
T ss_dssp E---EECSCCSEEEEE--TTEEEEECTTSEEEEEE--TTE-EEEEEECSSCCEEEEEEGGGTEEEEECTTCC--EEEEEC
T ss_pred e---EeccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCe-eEEEEECCccEEEEEEEecCCEEEEEcCCCC--EEEEEE
Confidence 0 112345566664 34444444 44554432 222 2333445566777888899999999988887 999997
Q ss_pred CCC
Q 040987 681 SKL 683 (762)
Q Consensus 681 ~~~ 683 (762)
...
T Consensus 600 ~~~ 602 (814)
T 3mkq_A 600 SLE 602 (814)
T ss_dssp CHH
T ss_pred CcH
Confidence 643
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=347.88 Aligned_cols=289 Identities=15% Similarity=0.217 Sum_probs=257.6
Q ss_pred cceeeeccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCcee---ccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKK---FLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~---~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
....+.+|.+.|++++|+|+ +.+|++|+.|++|++|++..++.. .+..|...|.++++++++.++++++.|+.
T Consensus 24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~ 103 (321)
T 3ow8_A 24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH 103 (321)
T ss_dssp EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence 44667789999999999874 578999999999999999877642 46788899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+++.+..+..+. ..+.+++|+|++++|++++.++.+++|++.+++....+...
T Consensus 104 i~lWd~~~~~~~~~~~~~~----------~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~---------- 163 (321)
T 3ow8_A 104 IRLWDLENGKQIKSIDAGP----------VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR---------- 163 (321)
T ss_dssp EEEEETTTTEEEEEEECCT----------TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----------
T ss_pred EEEEECCCCCEEEEEeCCC----------ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----------
Confidence 9999999999999988776 57789999999999999999999999999988766554432
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...+.+++|+|+|++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|++++|++++.|+
T Consensus 164 ~~~v~~~~~spdg~~lasg~---------~dg~i~iwd~~~~~~~~~~-----~~h-~~~v~~l~~spd~~~l~s~s~dg 228 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGA---------IDGIINIFDIATGKLLHTL-----EGH-AMPIRSLTFSPDSQLLVTASDDG 228 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCCCEEEECTTSCEEEEECTTS
T ss_pred CceEEEEEECCCCCEEEEEc---------CCCeEEEEECCCCcEEEEE-----ccc-CCceeEEEEcCCCCEEEEEcCCC
Confidence 55699999999999999999 8899999999988765554 678 88999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
.|++||+.++.....+ .+|...|.+++|+|++++|++++ |++|++||+.+++++..+.+|...|.+++
T Consensus 229 ~i~iwd~~~~~~~~~~-----------~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~ 297 (321)
T 3ow8_A 229 YIKIYDVQHANLAGTL-----------SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVK 297 (321)
T ss_dssp CEEEEETTTCCEEEEE-----------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEE
T ss_pred eEEEEECCCcceeEEE-----------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEE
Confidence 9999999877655443 46889999999999999999998 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|+|++++|++++.|+. |++||..
T Consensus 298 ~s~~g~~l~s~~~d~~--i~vwd~p 320 (321)
T 3ow8_A 298 YNGNGSKIVSVGDDQE--IHIYDCP 320 (321)
T ss_dssp ECTTSSEEEEEETTCC--EEEEECC
T ss_pred ECCCCCEEEEEeCCCe--EEEEeCC
Confidence 9999999999999998 9999963
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=353.07 Aligned_cols=291 Identities=13% Similarity=0.179 Sum_probs=258.0
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.....+.+|.+.|.+ ++|+|||++||+++ |++|+|||+.+++.+..+..|...|.+++|+|++ .+|++++.
T Consensus 46 ~~~~~l~gH~~~v~~-~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~ 117 (340)
T 1got_B 46 RTRRTLRGHLAKIYA-MHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-------NYVACGGL 117 (340)
T ss_dssp CEEEEECCCSSCEEE-EEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTS-------SEEEEEET
T ss_pred hhheeecCCCCceEE-EEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCC-------CEEEEEeC
Confidence 455678999999997 99999999999999 7999999999999999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|+.|++||+.+++....+.
T Consensus 118 d~~v~iw~~~~~~~~~~~~------------------------------------------------------------- 136 (340)
T 1got_B 118 DNICSIYNLKTREGNVRVS------------------------------------------------------------- 136 (340)
T ss_dssp TCEEEEEETTTCSBSCEEE-------------------------------------------------------------
T ss_pred CCeEEEEECccCCCcceeE-------------------------------------------------------------
Confidence 9999999998653211000
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
....+|.+.+.++.|++++++++++.|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++|+.
T Consensus 137 -------~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~sg~~ 204 (340)
T 1got_B 137 -------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT-----TTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp -------EEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEE-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred -------EEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEE-----EEEcCCCCceEEEEECCCCCEEEEEeC
Confidence 23456788899999999998777889999999999988754 567789999999999999999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
||.|++||+.++. +...+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 205 d~~v~~wd~~~~~------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 205 DASAKLWDVREGM------------------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp TSCEEEEETTTCS------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEECCCCe------------------------------eEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence 9999999997653 3467888999999999999999999999999999999
Q ss_pred cCCCceeccCCC---CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKKFLPRI---GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
+++++......+ ...+.+++|+|+|++|++++.|+.|++||+.+++.+..+.+|. +.|.+++|+|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~s~dg 324 (340)
T 1got_B 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----------NRVSCLGVTDDG 324 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEEEECTTS
T ss_pred CCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC----------CcEEEEEEcCCC
Confidence 998876543333 3479999999999999999999999999999999999999887 789999999999
Q ss_pred CEEEEeecCceEEEEE
Q 040987 459 GLVALRAENYCIHFYS 474 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d 474 (762)
++|++++.|+.|++||
T Consensus 325 ~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEcCCccEEecC
Confidence 9999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=362.63 Aligned_cols=294 Identities=15% Similarity=0.221 Sum_probs=262.1
Q ss_pred EecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|.........+.+|.+.|.+ ++|+|++++||+|+ |++|+|||+.+++.++++.+|...|++++|+|++ .+|
T Consensus 94 ~~~~~~~~~~l~gh~~~V~~-~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~-------~~l 165 (410)
T 1vyh_C 94 WIPRPPEKYALSGHRSPVTR-VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-------KLL 165 (410)
T ss_dssp CCCCSSCSCEEECCSSCEEE-EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-------SEE
T ss_pred cccCCCceEeecccCCcEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCC-------CEE
Confidence 43333445678999999998 99999999999999 7999999999999999999999999999999999 689
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++|+.|++|++||+.++++++++
T Consensus 166 ~sgs~D~~i~iwd~~~~~~~~~~--------------------------------------------------------- 188 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFECIRTM--------------------------------------------------------- 188 (410)
T ss_dssp EEEETTSCCCEEETTSSCEEECC---------------------------------------------------------
T ss_pred EEEeCCCeEEEEeCCCCceeEEE---------------------------------------------------------
Confidence 99999999999999887765433
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
.+|...|.+++|+|++++|++ +.|+.|++||+.++... ..+.+|...|.+++|+|++++
T Consensus 189 ---------------~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~-----~~~~~h~~~v~~~~~~~~g~~ 248 (410)
T 1vyh_C 189 ---------------HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----KTFTGHREWVRMVRPNQDGTL 248 (410)
T ss_dssp ---------------CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSE
T ss_pred ---------------cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE-----EEEeCCCccEEEEEECCCCCE
Confidence 346678899999999999985 57999999999998754 667799999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-----------
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD----------- 364 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----------- 364 (762)
|++|+.|+.|++||+.+++ +...+.+|...|.+++|+|+
T Consensus 249 l~s~s~D~~v~vwd~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 249 IASCSNDQTVRVWVVATKE------------------------------CKAELREHRHVVECISWAPESSYSSISEATG 298 (410)
T ss_dssp EEEEETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred EEEEcCCCeEEEEECCCCc------------------------------eeeEecCCCceEEEEEEcCcccccchhhhcc
Confidence 9999999999999997663 34577889999999999986
Q ss_pred ---------CCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 365 ---------GAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 ---------g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
|.+|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~ 378 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence 678999999999999999998875 4667888999999999999999999999999999999999999988
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
|. ..|.+++|+|++.+|++++.|+.|++|+.+
T Consensus 379 h~----------~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 379 HE----------HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp CS----------SCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CC----------CcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 87 789999999999999999999999999863
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=344.01 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=252.5
Q ss_pred eeecCcccccCCceeecC----CCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCCCCcccceeeeEEee
Q 040987 67 MIRGGRSYVSSPPAFSND----VKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 67 ~~~~h~~~v~~~~~~s~d----g~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
.+.+|.+.|.+ ++|+|+ +++||+|+ |++|+|||+.+++ ....+.+|...|.+++|++++ .+++++
T Consensus 27 ~~~~H~~~V~~-v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~-------~~l~s~ 98 (321)
T 3ow8_A 27 QEQAHDDAIWS-VAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTL-------PIAASS 98 (321)
T ss_dssp ETTSSSSCEEE-EEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSS-------SEEEEE
T ss_pred ecccCCCcEEE-EEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCC-------CEEEEE
Confidence 44689999998 999985 67999999 8999999998775 355789999999999999999 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|++||+.+++++..+..
T Consensus 99 s~D~~i~lWd~~~~~~~~~~~~---------------------------------------------------------- 120 (321)
T 3ow8_A 99 SLDAHIRLWDLENGKQIKSIDA---------------------------------------------------------- 120 (321)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC----------------------------------------------------------
T ss_pred eCCCcEEEEECCCCCEEEEEeC----------------------------------------------------------
Confidence 9999999999999987765542
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~ 298 (762)
+...+.+++|+|++++|+++ .++.+++|++.+++.. .....|...|.+++|+|++++|++
T Consensus 121 --------------~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~-----~~~~~~~~~v~~~~~spdg~~las 181 (321)
T 3ow8_A 121 --------------GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE-----YSLDTRGKFILSIAYSPDGKYLAS 181 (321)
T ss_dssp --------------CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEE-----EEEECSSSCEEEEEECTTSSEEEE
T ss_pred --------------CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCcee-----EEecCCCceEEEEEECCCCCEEEE
Confidence 34456778999999999966 6899999999988754 456678889999999999999999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.||.|++||+.+++ .+..+.+|...|.+++|+|++++|++++.|+.|+
T Consensus 182 g~~dg~i~iwd~~~~~------------------------------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 182 GAIDGIINIFDIATGK------------------------------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIK 231 (321)
T ss_dssp EETTSCEEEEETTTTE------------------------------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEE
T ss_pred EcCCCeEEEEECCCCc------------------------------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEE
Confidence 9999999999997764 3467788999999999999999999999999999
Q ss_pred EEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 379 VWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+||+++++.. .+..|...|.+++|+|++++|++++.|+.|++||+.+++++..+.+|. ..|.+++|+|+
T Consensus 232 iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~----------~~v~~v~~s~~ 301 (321)
T 3ow8_A 232 IYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ----------DQVWGVKYNGN 301 (321)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTT
T ss_pred EEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC----------CcEEEEEECCC
Confidence 9999988775 467788899999999999999999999999999999999999999887 78999999999
Q ss_pred CCEEEEeecCceEEEEEcC
Q 040987 458 GGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~ 476 (762)
+++|++++.|+.|++||..
T Consensus 302 g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 302 GSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCEEEEEeCCCeEEEEeCC
Confidence 9999999999999999963
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=357.81 Aligned_cols=288 Identities=17% Similarity=0.296 Sum_probs=261.4
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
...+.+|...|++++|+|++++|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~ 180 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 180 (410)
T ss_dssp SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCC
Confidence 4678899999999999999999999999999999999998874 567788999999999999999999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++..+..+.. | ...+.++
T Consensus 181 ~~~~~~~~~~h~----------~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~----h------~~~v~~~ 240 (410)
T 1vyh_C 181 GFECIRTMHGHD----------HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG----H------REWVRMV 240 (410)
T ss_dssp SSCEEECCCCCS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----C------SSCEEEE
T ss_pred CCceeEEEcCCC----------CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC----C------CccEEEE
Confidence 999999998887 7899999999999999999999999999999877665542 2 6679999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC------------------
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN------------------ 566 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd------------------ 566 (762)
.++|++++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|+
T Consensus 241 ~~~~~g~~l~s~s---------~D~~v~vwd~~~~~~~~~~-----~~h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 241 RPNQDGTLIASCS---------NDQTVRVWVVATKECKAEL-----REH-RHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EECCCCCEEEEEc---------CCCeEEEEECCCCceeeEe-----cCC-CceEEEEEEcCcccccchhhhccccccccC
Confidence 9999999999999 8999999999988766554 578 889999999996
Q ss_pred --CCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE
Q 040987 567 --RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA 643 (762)
Q Consensus 567 --~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~ 643 (762)
+.+|++++.|+.|++||+.++.....+ .+|...|++++|+|+|++|++++ |+.|++||+.+++++.
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~~~~~-----------~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMCLMTL-----------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK 374 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEEEEEE-----------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCceEEEE-----------ECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE
Confidence 668999999999999999987765443 46889999999999999999998 9999999999999999
Q ss_pred EeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 644 VIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.+.+|...|++++|+|++.+|++++.|+. |++|++.
T Consensus 375 ~~~~h~~~v~~l~~~~~~~~l~sgs~D~~--i~vW~~r 410 (410)
T 1vyh_C 375 TLNAHEHFVTSLDFHKTAPYVVTGSVDQT--VKVWECR 410 (410)
T ss_dssp EEECCSSCEEEEEECSSSSCEEEEETTSE--EEEEC--
T ss_pred EEcCCCCcEEEEEEcCCCCEEEEEeCCCc--EEEEeCC
Confidence 99999999999999999999999999998 9999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-41 Score=342.88 Aligned_cols=289 Identities=18% Similarity=0.277 Sum_probs=254.6
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|++|++||..+++.. .+..+...+.+++|+|+++++++++.|+.+++|+
T Consensus 46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~ 125 (340)
T 1got_B 46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 345778999999999999999999999999999999999988774 4566788999999999999999999999999999
Q ss_pred cCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 423 MPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 423 ~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
+.+. .....+.+|. +.+.++.|++++. +++++.|+.|++||+.+++....+. +| .
T Consensus 126 ~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~----~h------~ 184 (340)
T 1got_B 126 LKTREGNVRVSRELAGHT----------GYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFT----GH------T 184 (340)
T ss_dssp TTTCSBSCEEEEEEECCS----------SCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEEC----CC------S
T ss_pred CccCCCcceeEEEecCCC----------ccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEc----CC------C
Confidence 9874 4566677776 7889999999875 8899999999999999887655443 22 6
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~ 578 (762)
..|.+++|+|+++++++++ .|+.|++||+.++.....+ .+| ...|++++|+|++++|++++.|++
T Consensus 185 ~~v~~~~~~~~~~~l~sg~---------~d~~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~~~p~~~~l~s~s~d~~ 249 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGA---------CDASAKLWDVREGMCRQTF-----TGH-ESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCSEEEEE-----CCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred CceEEEEECCCCCEEEEEe---------CCCcEEEEECCCCeeEEEE-----cCC-cCCEEEEEEcCCCCEEEEEcCCCc
Confidence 7799999999999999999 8999999999988766554 678 889999999999999999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
|++||+.+++....+. ...+...|++++|+|+|++|++|+ |+.|++||+.+++.+..+.+|..+|.+++|
T Consensus 250 v~iwd~~~~~~~~~~~---------~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~ 320 (340)
T 1got_B 250 CRLFDLRADQELMTYS---------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp EEEEETTTTEEEEEEC---------CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE
T ss_pred EEEEECCCCcEEEEEc---------cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEE
Confidence 9999998876554331 112345799999999999999998 999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+|||++|++++.|+. |++||
T Consensus 321 s~dg~~l~s~s~D~~--i~iWd 340 (340)
T 1got_B 321 TDDGMAVATGSWDSF--LKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSC--EEEEC
T ss_pred cCCCCEEEEEcCCcc--EEecC
Confidence 999999999999998 99997
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=347.71 Aligned_cols=320 Identities=13% Similarity=0.148 Sum_probs=236.9
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec------CCeEEEEeccC
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV------TGRILIWRGFG 312 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~------dg~v~vw~~~~ 312 (762)
..+.+.+++.++....+.....|+++... ...|...|++++|+|||++||+++. |+.|++|+..+
T Consensus 9 sg~d~g~~~~~~~~~g~~~~~~w~~p~~~---------p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~ 79 (357)
T 4g56_B 9 SGVDLGTENLYFQSNGSSKGSAWGRPVTA---------PACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPE 79 (357)
T ss_dssp ----------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC
T ss_pred cCCCCCccceEEecCCCccccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCC
Confidence 34556667777777677888999986543 3479999999999999999999997 77899998765
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--- 389 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--- 389 (762)
+.... .......+|...|.+++|+|+++ +++++.||+|++||+.+++...
T Consensus 80 ~~~~~--------------------------~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~ 132 (357)
T 4g56_B 80 GAPNE--------------------------SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNK 132 (357)
T ss_dssp ---CG--------------------------GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCC
T ss_pred CCcce--------------------------eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEe
Confidence 53221 22345567889999999999985 5567889999999999887532
Q ss_pred --cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeec
Q 040987 390 --LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAE 466 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 466 (762)
...|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++. ++++++.
T Consensus 133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~----------~~v~~v~~s~~~~~~~~s~~~ 202 (357)
T 4g56_B 133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS----------SEVNCVAACPGKDTIFLSCGE 202 (357)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTCSSCEEEEET
T ss_pred eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC----------CCEEEEEEccCCCceeeeecc
Confidence 34678899999999999999999999999999999999999999887 7899999999875 7889999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
|+.|++||+++++....+.... +...+.+++|+|++ .+|++++ .|+.|++||+.+++....+
T Consensus 203 dg~v~~wd~~~~~~~~~~~~~~--------~~~~v~~v~~sp~~~~~la~g~---------~d~~i~~wd~~~~~~~~~~ 265 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRIDFCA--------SDTIPTSVTWHPEKDDTFACGD---------ETGNVSLVNIKNPDSAQTS 265 (357)
T ss_dssp TSCEEECCTTSSSCBCBCCCTT--------CCSCEEEEEECTTSTTEEEEEE---------SSSCEEEEESSCGGGCEEE
T ss_pred CCceEEEECCCCceeeeeeecc--------ccccccchhhhhcccceEEEee---------cccceeEEECCCCcEeEEE
Confidence 9999999999887655443221 15679999999985 5788888 8899999999998876655
Q ss_pred EEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEE
Q 040987 546 STIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVL 623 (762)
Q Consensus 546 ~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l 623 (762)
.+| ...|++++|+|++ ++|++++.|++|+|||+.+++....+ +|...|++++|+| |+++|
T Consensus 266 -----~~~-~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~------------~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 266 -----AVH-SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL------------SHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp -----CCC-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC------------CCSSCEEEEEECSSSTTEE
T ss_pred -----ecc-ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC------------CCCCCEEEEEEeCCCCCEE
Confidence 578 8899999999987 57999999999999999988765443 5889999999998 89999
Q ss_pred EEEc-CCeEEEEeCCCC
Q 040987 624 AVAA-ETVITLWDPDRN 639 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~ 639 (762)
++++ |++|++|++.+.
T Consensus 328 ~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 328 TTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp EEEETTSCEEEEECC--
T ss_pred EEEcCCCeEEEEECCCC
Confidence 9998 999999999764
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=333.14 Aligned_cols=290 Identities=14% Similarity=0.180 Sum_probs=250.3
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
...++.+|.+.|.+ ++|+|||++||+++ |+.|+|||+++++.++.+.+|..+|.+++|+|++ .+|++|+.|
T Consensus 5 ~~~~~~~h~~~V~~-~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~s~s~d 76 (304)
T 2ynn_A 5 IKKTFSNRSDRVKG-IDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-------NWIIVGSDD 76 (304)
T ss_dssp CEEEEEEECSCEEE-EEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-------TEEEEEETT
T ss_pred eEEeecCCCCceEE-EEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-------CEEEEECCC
Confidence 35578999999997 99999999999999 7999999999999999999999999999999999 689999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
++|++||+.+++++..+.
T Consensus 77 ~~i~vwd~~~~~~~~~~~-------------------------------------------------------------- 94 (304)
T 2ynn_A 77 FRIRVFNYNTGEKVVDFE-------------------------------------------------------------- 94 (304)
T ss_dssp SEEEEEETTTCCEEEEEE--------------------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEe--------------------------------------------------------------
Confidence 999999999988766554
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEee
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGD 300 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~ 300 (762)
+|...|.+++|+|++++|+++ .|+.|++||+.++. .....+.+|...|.+++|+| ++.+|++|+
T Consensus 95 ----------~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~----~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 95 ----------AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW----ALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ----------CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT----EEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ----------CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc----chhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 356778899999999999854 79999999998764 23356778999999999999 678999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec--CCCEEEEEecCCeEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS--DGAYLYSGGKEGVLV 378 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~dg~i~ 378 (762)
.|+.|++||+...... .....+|...+..+.|+| ++++|++++.|++|+
T Consensus 161 ~D~~v~iwd~~~~~~~-----------------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPN-----------------------------FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp TTSEEEEEETTCSSCS-----------------------------EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred CCCeEEEEECCCCCcc-----------------------------ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 9999999998654321 123345667899999986 778999999999999
Q ss_pred EEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 379 VWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 379 ~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+||+++++.. .+..|...|.+++|+|++++|++++.|+.|++||..+++....+..+. ..+.+++++|+
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~----------~~~~~~~~~~~ 281 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL----------ERSWCIATHPT 281 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS----------SSEEEEEECTT
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC----------ccEEEEEECCC
Confidence 9999998875 467788999999999999999999999999999999999999998876 68899999998
Q ss_pred CC--EEEEeecCceEEEEEcCC
Q 040987 458 GG--LVALRAENYCIHFYSLLD 477 (762)
Q Consensus 458 ~~--~l~~~~~dg~i~i~d~~~ 477 (762)
+. ++++++.+| +.+|++..
T Consensus 282 ~~~~~~asg~~~g-~~~~~~~~ 302 (304)
T 2ynn_A 282 GRKNYIASGFDNG-FTVLSLGN 302 (304)
T ss_dssp CGGGCEEEEETTE-EEEEECC-
T ss_pred CCceEEEEecCCc-eEEEEecc
Confidence 75 477776655 77887754
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-41 Score=353.95 Aligned_cols=360 Identities=15% Similarity=0.161 Sum_probs=281.3
Q ss_pred eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEec----cCCce------eecccccccc
Q 040987 257 KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRG----FGDRT------FATNDNKMNL 325 (762)
Q Consensus 257 ~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~----~~~~~------~~~~~~~~~~ 325 (762)
.+.+|++...... .....|.+.|.+++|+|+++ +||+|+.||.|++|++ .+++. .......
T Consensus 26 ~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--- 97 (425)
T 1r5m_A 26 IDSSDDLDGFVKI-----LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP--- 97 (425)
T ss_dssp --------CCCEE-----CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---
T ss_pred ccccccchhhhhh-----eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---
Confidence 3456777654421 23345668999999999999 9999999999999999 66652 1100000
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
........+|...|.+++|+|++++|++++.|+.|++||........+..|...|.+++|+|+
T Consensus 98 -----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~ 160 (425)
T 1r5m_A 98 -----------------FALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKD 160 (425)
T ss_dssp -----------------CCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTT
T ss_pred -----------------ccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCC
Confidence 000012233788999999999999999999999999999544444567778899999999999
Q ss_pred CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC-----CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc
Q 040987 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL-----PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG 480 (762)
Q Consensus 406 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 480 (762)
+++|++++.++.|++||+.+++.+..+..+...... .......+.+++|+|++ .+++++.++.|++||+.+++.
T Consensus 161 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~ 239 (425)
T 1r5m_A 161 GTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTP 239 (425)
T ss_dssp SSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSC
T ss_pred CCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCce
Confidence 999999999999999999999999888776522100 00000118899999985 588889999999999998876
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
...+.. | ...+.+++|+|++++|++++ .++.|++||+.+++....+ .+| ...|.+
T Consensus 240 ~~~~~~----~------~~~i~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~-----~~~-~~~i~~ 294 (425)
T 1r5m_A 240 TGKLIG----H------HGPISVLEFNDTNKLLLSAS---------DDGTLRIWHGGNGNSQNCF-----YGH-SQSIVS 294 (425)
T ss_dssp SEEECC----C------SSCEEEEEEETTTTEEEEEE---------TTSCEEEECSSSBSCSEEE-----CCC-SSCEEE
T ss_pred eeeecc----C------CCceEEEEECCCCCEEEEEc---------CCCEEEEEECCCCccceEe-----cCC-CccEEE
Confidence 655432 2 66799999999999999998 8899999999988776655 467 889999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
++|+|++ ++++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|++++ |+.|++||+.++
T Consensus 295 ~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~ 362 (425)
T 1r5m_A 295 ASWVGDD-KVISCSMDGSVRLWSLKQNTLLALS-----------IVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKL 362 (425)
T ss_dssp EEEETTT-EEEEEETTSEEEEEETTTTEEEEEE-----------ECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHH
T ss_pred EEECCCC-EEEEEeCCCcEEEEECCCCcEeEec-----------ccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCC
Confidence 9999999 9999999999999999887655444 35788999999999999999998 999999999998
Q ss_pred e--------------------EEEEeccccC--ceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 640 V--------------------LVAVIGETLT--PIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 640 ~--------------------~~~~l~~~~~--~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
+ ++..+.+|.. .|.+++|+|++++|++++.||. |++||++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iw~~~ 424 (425)
T 1r5m_A 363 NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQE--GSVVAIP 424 (425)
T ss_dssp HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSC--CEEEECC
T ss_pred ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCce--EEEEeec
Confidence 8 8899999976 9999999999999999999998 9999986
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=338.43 Aligned_cols=314 Identities=15% Similarity=0.207 Sum_probs=253.6
Q ss_pred ccceeeecccc-ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee----ccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPS-EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK----FLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~-~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
.++..+.+|.. .|.+++|+|+|++|++++.|++|++||+.++... ....|...|.+++|+|++++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 35678889988 9999999999999999999999999999887532 235788899999999999999999999999
Q ss_pred EEEEcCCc--eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 419 HLLKMPSM--EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 419 ~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
++|+...+ +.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++.....+.. ...|
T Consensus 86 ~iw~~~~~~~~~~~~~~~h~----------~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~-~~~h----- 149 (345)
T 3fm0_A 86 CIWKKNQDDFECVTTLEGHE----------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSH----- 149 (345)
T ss_dssp EEEEECCC-EEEEEEECCCS----------SCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEE-ECCC-----
T ss_pred EEEEccCCCeEEEEEccCCC----------CCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEE-ecCc-----
Confidence 99999875 4567788877 7899999999999999999999999999987654433222 2223
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
...|.+++|+|++++|++++ .|+.|++||..++..... ..+.+| ...|.+++|+|++++|++++.|
T Consensus 150 -~~~v~~~~~~p~~~~l~s~s---------~d~~i~~w~~~~~~~~~~---~~~~~h-~~~v~~l~~sp~g~~l~s~s~D 215 (345)
T 3fm0_A 150 -TQDVKHVVWHPSQELLASAS---------YDDTVKLYREEEDDWVCC---ATLEGH-ESTVWSLAFDPSGQRLASCSDD 215 (345)
T ss_dssp -CSCEEEEEECSSSSCEEEEE---------TTSCEEEEEEETTEEEEE---EEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred -CCCeEEEEECCCCCEEEEEe---------CCCcEEEEEecCCCEEEE---EEecCC-CCceEEEEECCCCCEEEEEeCC
Confidence 67799999999999999999 889999999987653221 124788 8999999999999999999999
Q ss_pred CcEEEEEccccccccccc----CCceeeeeeccc-CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------E
Q 040987 577 GDFKVWICNDELQQKDLQ----SSGWSCHAVGSY-KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------L 641 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~-~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~ 641 (762)
++|++||........... ...|.+.....+ |...|.+++|+|++..|++++ |+.|++|+...+. .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 999999975433222111 234445444443 888999999999999999998 9999999987642 1
Q ss_pred EEEeccccCceeEEEEeCCC-CEEEEEEcCCCCeEEEEECCCCceeeEE
Q 040987 642 VAVIGETLTPIMNMSFVGSS-EYLVATSWGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg-~~l~s~~~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.....+|...|++++|+|++ .+|++++.||. |++|++.+++....+
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~--v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGE--VAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSC--EEEEEECC-------
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCc--EEEEEecCCCCcccc
Confidence 22346899999999999987 59999999999 999999988765543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=332.80 Aligned_cols=292 Identities=13% Similarity=0.213 Sum_probs=256.1
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
..+++.+|.+.|.+++|+|++++|++++.||+|++||+.+++.. .+..+..++.+++|+|++++|++++.|+.|++||+
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 45788999999999999999999999999999999999998774 45667889999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.++..... ...+| ...|.+
T Consensus 85 ~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~---~~~~h------~~~v~~ 145 (304)
T 2ynn_A 85 NTGEKVVDFEAHP----------DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGH------EHFVMC 145 (304)
T ss_dssp TTCCEEEEEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEE---EECCC------CSCEEE
T ss_pred CCCcEEEEEeCCC----------CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhh---hhccc------CCcEEE
Confidence 9999999999887 7899999999999999999999999999987643322 12233 677999
Q ss_pred EEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC--CCCeEEEEeCCCcEE
Q 040987 504 VALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP--NRRAAVSSSYGGDFK 580 (762)
Q Consensus 504 ~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp--d~~~l~~~~~dg~i~ 580 (762)
++|+| ++.+|++++ .|+.|++||+........+. .+| ...+..+.|+| ++++|++++.|++|+
T Consensus 146 v~~~p~~~~~l~sgs---------~D~~v~iwd~~~~~~~~~~~----~~~-~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 146 VAFNPKDPSTFASGC---------LDRTVKVWSLGQSTPNFTLT----TGQ-ERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECTTCTTEEEEEE---------TTSEEEEEETTCSSCSEEEE----CCC-TTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred EEECCCCCCEEEEEe---------CCCeEEEEECCCCCccceec----cCC-cCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 99999 678999999 89999999998877665553 355 67899999987 778999999999999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeC
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVG 659 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~ 659 (762)
+||+.+++....+ .+|...|.+++|+|++++|++|+ |++|++||+.+++++..+..|...+++++|+|
T Consensus 212 iWd~~~~~~~~~~-----------~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 212 IWDYQTKSCVATL-----------EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP 280 (304)
T ss_dssp EEETTTTEEEEEE-----------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred EEeCCCCccceee-----------CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence 9999987765544 47899999999999999999998 99999999999999999999999999999999
Q ss_pred CCC--EEEEEEcCCCCeEEEEECCCC
Q 040987 660 SSE--YLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 660 dg~--~l~s~~~d~~~~v~vwd~~~~ 683 (762)
++. ++++++.|| +.+|++.+.
T Consensus 281 ~~~~~~~asg~~~g---~~~~~~~~~ 303 (304)
T 2ynn_A 281 TGRKNYIASGFDNG---FTVLSLGND 303 (304)
T ss_dssp TCGGGCEEEEETTE---EEEEECC--
T ss_pred CCCceEEEEecCCc---eEEEEeccC
Confidence 875 588888887 899988753
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.39 Aligned_cols=293 Identities=11% Similarity=0.135 Sum_probs=255.3
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.....+.||.+.|.+ ++|+||+++||+++ |++|+|||..+++..+.+..|...|.+++|+|++ .+|++++.
T Consensus 55 ~~~~~l~gH~~~V~~-~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g-------~~lasg~~ 126 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLC-MDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSG-------CAIACGGL 126 (354)
T ss_dssp CEEEEEECCSSCEEE-EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTS-------SEEEEEST
T ss_pred EEEEEecCCCCeEEE-EEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCC-------CEEEEeeC
Confidence 456678999999998 99999999999999 7999999999999999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|+++++|++.......
T Consensus 127 d~~i~v~~~~~~~~~~---------------------------------------------------------------- 142 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNEN---------------------------------------------------------------- 142 (354)
T ss_dssp TSEEEEEECCCCTTCC----------------------------------------------------------------
T ss_pred CCCEEEEEEecccccc----------------------------------------------------------------
Confidence 9999999986432100
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--CCcEEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--TQRIVAA 298 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~~~~l~~ 298 (762)
. .........|...|.+++|+|+++.|+ ++.|+.|++||+.+++.. ..+.+|...|.+++|+| ++++|++
T Consensus 143 -~-~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 143 -M-AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLL-----QSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp -S-GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred -c-cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEE-----EEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 0 000023456888999999999999887 457999999999998754 66778999999999988 5689999
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.||.|++||+.+++ ++..+.+|...|.+++|+|++++|++++.|++|+
T Consensus 216 gs~Dg~v~~wd~~~~~------------------------------~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 216 GGCDKKAMVWDMRSGQ------------------------------CVQAFETHESDVNSVRYYPSGDAFASGSDDATCR 265 (354)
T ss_dssp EETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EeCCCeEEEEECCCCc------------------------------EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEE
Confidence 9999999999997764 3467788999999999999999999999999999
Q ss_pred EEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 379 VWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 379 ~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
+||+++++...... +...+.+++|+|++++|++++.|+.|++||+.+++.+..+.+|. +.|.+++|+
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~----------~~v~~l~~s 335 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE----------NRVSTLRVS 335 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS----------SCEEEEEEC
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC----------CcEEEEEEC
Confidence 99999887643322 23478999999999999999999999999999999999998887 789999999
Q ss_pred CCCCEEEEeecCceEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d 474 (762)
|++++|++++.|+.|++|+
T Consensus 336 pdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 336 PDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSSCEEEEETTSEEEEEC
T ss_pred CCCCEEEEEcCCCCEEecC
Confidence 9999999999999999996
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=346.71 Aligned_cols=324 Identities=13% Similarity=0.087 Sum_probs=232.9
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC------CeEEEEeCC
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD------GTIKYWDFS 151 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d------~~i~vWd~~ 151 (762)
.+.+.+++.++.+.++.....|++.... ..+|...|++++||||| ++|+|++.| ++|++|+..
T Consensus 10 g~d~g~~~~~~~~~g~~~~~~w~~p~~~----p~~H~~~V~~v~fSpDG-------~~las~s~d~~~~wd~~v~~~~~~ 78 (357)
T 4g56_B 10 GVDLGTENLYFQSNGSSKGSAWGRPVTA----PACMEVQIGAVRYRRDG-------ALLLAASSLSSRTWGGSIWVFKDP 78 (357)
T ss_dssp ----------------------------------CCCSEEEEEEECSSS-------CEEEEEECSSSSSCCEEEEEESSC
T ss_pred CCCCCccceEEecCCCccccccCCCCCC----cccccCCEEEEEECCCC-------CEEEEEcCCCCccccCeEEEEECC
Confidence 3667888888777777888999986443 35799999999999999 788999984 445555544
Q ss_pred CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceee
Q 040987 152 VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVT 231 (762)
Q Consensus 152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~ 231 (762)
++.... ......
T Consensus 79 ~~~~~~--------------------------------------------------------------------~~~~~~ 90 (357)
T 4g56_B 79 EGAPNE--------------------------------------------------------------------SLCTAG 90 (357)
T ss_dssp C---CG--------------------------------------------------------------------GGCSEE
T ss_pred CCCcce--------------------------------------------------------------------eEeccc
Confidence 332110 011234
Q ss_pred eccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 232 LAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.+|...|.+++|+|++++|+++.++.|+|||+.+++.... ......+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus 91 ~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~-~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~ 169 (357)
T 4g56_B 91 VQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLV-NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS 169 (357)
T ss_dssp EECSSCEEEEEEETTTEEEEEETTSCEEEC--------CC-CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred CCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEE-EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC
Confidence 5678889999999999999999999999999998875411 112344799999999999999999999999999999997
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceec-
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKF- 389 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~- 389 (762)
+++ ++..+.+|...|.+++|++++. ++++++.|+.|++||+++++...
T Consensus 170 ~~~------------------------------~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~ 219 (357)
T 4g56_B 170 QKA------------------------------VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR 219 (357)
T ss_dssp TTE------------------------------EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred CCc------------------------------EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence 764 3467888999999999999875 78899999999999999987643
Q ss_pred --cCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEEEEee
Q 040987 390 --LPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRA 465 (762)
Q Consensus 390 --~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~ 465 (762)
...+...+.+++|+|++ .+|++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++ ++|++++
T Consensus 220 ~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~----------~~v~~l~~sp~~~~~lasgs 289 (357)
T 4g56_B 220 IDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS----------QNITGLAYSYHSSPFLASIS 289 (357)
T ss_dssp CCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCS----------SCEEEEEECSSSSCCEEEEE
T ss_pred eeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccc----------eeEEEEEEcCCCCCEEEEEe
Confidence 33456689999999975 678889999999999999999999998877 789999999987 5789999
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
.|+.|++||+.+++.+..+ +| ...|++++|+| |+++|++++ .|++|++|++.+...
T Consensus 290 ~D~~i~iwd~~~~~~~~~~-----~H------~~~V~~vafsP~d~~~l~s~s---------~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 290 EDCTVAVLDADFSEVFRDL-----SH------RDFVTGVAWSPLDHSKFTTVG---------WDHKVLHHHLPSEGR 346 (357)
T ss_dssp TTSCEEEECTTSCEEEEEC-----CC------SSCEEEEEECSSSTTEEEEEE---------TTSCEEEEECC----
T ss_pred CCCEEEEEECCCCcEeEEC-----CC------CCCEEEEEEeCCCCCEEEEEc---------CCCeEEEEECCCCCc
Confidence 9999999999887654332 23 67899999998 899999999 899999999976543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-40 Score=336.60 Aligned_cols=290 Identities=14% Similarity=0.184 Sum_probs=251.7
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|++|++||..+++.. ....+...+.+++|+|+|.++++++.|+.+++|+
T Consensus 55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134 (354)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence 345788999999999999999999999999999999999888764 3455677899999999999999999999999999
Q ss_pred cCCc------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 423 MPSM------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 423 ~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
+... .....+.+|. +.|.+++|+|++..|++++.|++|++||+.+++.+..+.. |
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~----h----- 195 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHT----------NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG----H----- 195 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECS----------SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC----C-----
T ss_pred EeccccccccccceeeeccC----------CcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC----C-----
Confidence 8643 2334455555 7899999999999999999999999999999887665542 2
Q ss_pred cceeEEEEEEec--CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 497 VTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 497 ~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+| ++++|++++ .|+.|++||+++++....+ .+| ...|++++|+|++++|++++
T Consensus 196 -~~~v~~~~~~~~~~g~~l~sgs---------~Dg~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~~~p~~~~l~s~s 259 (354)
T 2pbi_B 196 -GADVLCLDLAPSETGNTFVSGG---------CDKKAMVWDMRSGQCVQAF-----ETH-ESDVNSVRYYPSGDAFASGS 259 (354)
T ss_dssp -SSCEEEEEECCCSSCCEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECTTSSEEEEEE
T ss_pred -CCCeEEEEEEeCCCCCEEEEEe---------CCCeEEEEECCCCcEEEEe-----cCC-CCCeEEEEEeCCCCEEEEEe
Confidence 66799999987 578999999 8999999999998766554 678 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
.|++|++||+..+.....+. ...+...+.+++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...|.
T Consensus 260 ~D~~v~lwd~~~~~~~~~~~---------~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~ 330 (354)
T 2pbi_B 260 DDATCRLYDLRADREVAIYS---------KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVS 330 (354)
T ss_dssp TTSCEEEEETTTTEEEEEEC---------CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE
T ss_pred CCCeEEEEECCCCcEEEEEc---------CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEE
Confidence 99999999998775543331 112345789999999999999998 99999999999999999999999999
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+++|+|||++|++++.|+. |++|+
T Consensus 331 ~l~~spdg~~l~sgs~D~~--v~vW~ 354 (354)
T 2pbi_B 331 TLRVSPDGTAFCSGSWDHT--LRVWA 354 (354)
T ss_dssp EEEECTTSSCEEEEETTSE--EEEEC
T ss_pred EEEECCCCCEEEEEcCCCC--EEecC
Confidence 9999999999999999998 99996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=335.41 Aligned_cols=300 Identities=14% Similarity=0.113 Sum_probs=235.1
Q ss_pred EEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccce-----------EEeeecCCccceeEEEEeC
Q 040987 56 RTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL-----------QISSLEGHKAPVTTVIVVP 124 (762)
Q Consensus 56 ~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~-----------~~~~l~~h~~~V~~v~~s~ 124 (762)
+.|+++.... ..|...|.+ ++|||||++|++++++++++||..... .......|...|.+++|+|
T Consensus 17 r~w~~~~~~~---~~~~~~v~~-~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 17 REWNLPPNAP---ACMERQLEA-ARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp ------CCSC---SSCCSEEEE-EEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred cccCCCCCCc---ccccCCEEE-EEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 5687765443 356777887 999999999999998888888743211 1111223567899999999
Q ss_pred CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
++ .|++|+.||+|+|||+.+++.+..+.
T Consensus 93 d~--------~l~~~s~dg~v~lWd~~~~~~~~~~~-------------------------------------------- 120 (344)
T 4gqb_B 93 ER--------GILVASDSGAVELWELDENETLIVSK-------------------------------------------- 120 (344)
T ss_dssp TT--------EEEEEETTSEEEEEEECTTSSCEEEE--------------------------------------------
T ss_pred CC--------eEEEEECCCEEEEEeccCCCceeEee--------------------------------------------
Confidence 97 45699999999999999887665443
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
....+|...|.+++|+|||++|+++ .|+.|++||+.+++.. ..+.+|...
T Consensus 121 ------------------------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~-----~~~~~h~~~ 171 (344)
T 4gqb_B 121 ------------------------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVL-----SSYRAHAAQ 171 (344)
T ss_dssp ------------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----EEECCCSSC
T ss_pred ------------------------ccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEE-----EEEcCcCCc
Confidence 2345688999999999999999965 7999999999998765 677899999
Q ss_pred eEEEEEcCCCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
|.+++|+|++. +|++++.|+.|++||+.+++.... .....|...+.+++|+
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ----------------------------IGCSAPGYLPTSLAWH 223 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE----------------------------CC----CCCEEEEEEC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee----------------------------eecceeeccceeeeec
Confidence 99999999885 789999999999999987754320 1123456678999999
Q ss_pred cC-CCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 363 SD-GAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 363 ~~-g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
|+ +++|++++.|++|++||+++++.. .+..|...|.+++|+|++ ++|++++.|+.|++||+.++++. .+.+|.
T Consensus 224 p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~--- 299 (344)
T 4gqb_B 224 PQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHR--- 299 (344)
T ss_dssp SSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCS---
T ss_pred CCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCC---
Confidence 85 578899999999999999998874 467788999999999998 57899999999999999988765 456776
Q ss_pred CCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCC
Q 040987 440 PLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~ 479 (762)
+.|.+++|+|+++ +|++++.|++|++|++.+..
T Consensus 300 -------~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 300 -------DFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp -------SCEEEEEECSSSTTEEEEEETTSCEEEEECCC--
T ss_pred -------CCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCC
Confidence 7899999999986 56789999999999997653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-39 Score=329.29 Aligned_cols=312 Identities=13% Similarity=0.171 Sum_probs=249.6
Q ss_pred cceEEeeecCCcc-ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccC
Q 040987 103 TGLQISSLEGHKA-PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 103 ~~~~~~~l~~h~~-~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (762)
..+++.++.+|.. .|.+++|+|+| .+||+|+.|++|+|||+.++......
T Consensus 4 ~~~~~~~~~~h~~~~v~~l~~sp~g-------~~las~~~D~~i~iw~~~~~~~~~~~---------------------- 54 (345)
T 3fm0_A 4 SLVLLGRVPAHPDSRCWFLAWNPAG-------TLLASCGGDRRIRIWGTEGDSWICKS---------------------- 54 (345)
T ss_dssp CEEEEEEECCSTTSCEEEEEECTTS-------SCEEEEETTSCEEEEEEETTEEEEEE----------------------
T ss_pred cEEEeeeecCCCCCcEEEEEECCCC-------CEEEEEcCCCeEEEEEcCCCcceeee----------------------
Confidence 3467889999988 99999999999 78999999999999998776533211
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLI 260 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~i 260 (762)
....+|...|.+++|+|+|++|+++ .|+.+++
T Consensus 55 -----------------------------------------------~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 55 -----------------------------------------------VLSEGHQRTVRKVAWSPCGNYLASASFDATTCI 87 (345)
T ss_dssp -----------------------------------------------EECSSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -----------------------------------------------eeccccCCcEEEEEECCCCCEEEEEECCCcEEE
Confidence 1234678899999999999999855 6999999
Q ss_pred EEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccC
Q 040987 261 WKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDN 340 (762)
Q Consensus 261 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (762)
|++..+.. .....+.+|...|.+++|+|++++|++|+.|+.|++||+..+...
T Consensus 88 w~~~~~~~---~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~------------------------ 140 (345)
T 3fm0_A 88 WKKNQDDF---ECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY------------------------ 140 (345)
T ss_dssp EEECCC-E---EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCE------------------------
T ss_pred EEccCCCe---EEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCe------------------------
Confidence 99987653 223566789999999999999999999999999999998765322
Q ss_pred CccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 341 DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 341 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
.++..+.+|...|.+++|+|++++|++++.|++|++||..+++. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 141 ---~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 141 ---ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT 217 (345)
T ss_dssp ---EEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ---EEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence 23467788999999999999999999999999999999988754 356788899999999999999999999999
Q ss_pred EEEEEcCCc---------------eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce-
Q 040987 418 VHLLKMPSM---------------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI- 481 (762)
Q Consensus 418 i~i~d~~~~---------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~- 481 (762)
|++|+.... +++..+.+. |...|.+++|+|++..|++++.|+.|++|+.......
T Consensus 218 v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~ 288 (345)
T 3fm0_A 218 VRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF---------HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQ 288 (345)
T ss_dssp EEEEEEECTTCTTCCCCC---CEEEEEEEECSS---------CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTT
T ss_pred EEEeccccCCCCccceeeccCCccceeEEecCC---------CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcc
Confidence 999996321 233344331 2378999999999999999999999999998765321
Q ss_pred ---eeEEe-ecccccCCCCcceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 482 ---SEVQV-CERNHQPGDDVTVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 482 ---~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
..+.. .... |...|.+++|+|++. +||+++ .|+.|++|++.+.+....
T Consensus 289 ~~~~~~~~~~~~~------h~~~V~~v~~~p~~~~~laS~s---------~Dg~v~~W~~~~~~~~~~ 341 (345)
T 3fm0_A 289 QPTFSLTAHLHQA------HSQDVNCVAWNPKEPGLLASCS---------DDGEVAFWKYQRPEGLHH 341 (345)
T ss_dssp SCCEEEEEEETTS------SSSCEEEEEECSSSTTEEEEEE---------TTSCEEEEEECC------
T ss_pred eeeEEEEeeeccc------ccCcEeEeEEeCCCceEEEEcC---------CCCcEEEEEecCCCCccc
Confidence 11111 1122 377899999999984 899998 899999999998876543
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=342.62 Aligned_cols=316 Identities=12% Similarity=0.165 Sum_probs=256.9
Q ss_pred EEEecCCc-ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCccccee
Q 040987 56 RTAEYPAV-NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKIL 133 (762)
Q Consensus 56 ~~~~~~~~-~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~ 133 (762)
..|+..+. ....+.||.+.|.+ ++|+|||++||+|+ |++|+|||+.+++.+..+.+|...|.+++|+|++
T Consensus 49 ~~~~~~~~~~~~~l~gH~~~V~~-~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g------- 120 (380)
T 3iz6_a 49 VSFNPTDLVCCRTLQGHSGKVYS-LDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG------- 120 (380)
T ss_dssp CCCCCCCCEEEEEECCCSSCEEE-EEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-------
T ss_pred cccccceeEEeecccccccEEEE-EEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-------
Confidence 34555443 34568999999998 99999999999999 7999999999999999999999999999999999
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
.+|++++.|++|++||+.+.... +..
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~------------------------~~~------------------------------ 146 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADR------------------------DGN------------------------------ 146 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSC------------------------CCS------------------------------
T ss_pred CEEEEeeCCCcEEEEECCCCccc------------------------cCC------------------------------
Confidence 78999999999999998754210 000
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCC-CEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSG-KYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
........+|.+.+.+++|+|++ ..|+ ++.|+.|++||+.+++...........+|...|.+++|++
T Consensus 147 -----------~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 215 (380)
T 3iz6_a 147 -----------MPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS 215 (380)
T ss_dssp -----------STTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred -----------ccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence 00113456788999999999975 4455 5579999999999987541111112257999999999987
Q ss_pred -CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 292 -TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 292 -~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
++++|++|+.||.|++||+.... ..+..+.+|...|.+++|+|++++|++
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~-----------------------------~~~~~~~~h~~~v~~v~~~p~~~~l~s 266 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITS-----------------------------RAVRTYHGHEGDINSVKFFPDGQRFGT 266 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTC-----------------------------CCCEEECCCSSCCCEEEECTTSSEEEE
T ss_pred CCCCEEEEEECCCeEEEEECCCCC-----------------------------cceEEECCcCCCeEEEEEecCCCeEEE
Confidence 88999999999999999986332 234678899999999999999999999
Q ss_pred EecCCeEEEEecCCCceeccC-C-------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 371 GGKEGVLVVWQLDTGKKKFLP-R-------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~-~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
++.|++|++||+++++..... . +...+.+++|+|+|++|++++.||.|++||..+++....+....
T Consensus 267 ~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------ 340 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ------ 340 (380)
T ss_dssp ECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC------
T ss_pred EcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc------
Confidence 999999999999998764322 1 12248899999999999999999999999999988887773211
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
..|.+.|.+++|+|++++|++++.|+.|++|++...+
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 1233789999999999999999999999999997654
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=326.43 Aligned_cols=289 Identities=16% Similarity=0.230 Sum_probs=249.4
Q ss_pred cceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+...+.+|.+.|.+++|+|++ ++|++++.|++|++|++..... ..+..|...|.+++|+|++++|++++.|+.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 88 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKT 88 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCE
Confidence 446789999999999999965 8999999999999999875321 346678999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+++.+..+.+|. ..|.+++|+|++.+|++++.|+.|++||+... .+..+ .+|
T Consensus 89 v~~wd~~~~~~~~~~~~h~----------~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~----~~h------ 147 (319)
T 3frx_A 89 LRLWDVATGETYQRFVGHK----------SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATL----LGH------ 147 (319)
T ss_dssp EEEEETTTTEEEEEEECCS----------SCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEE----CCC------
T ss_pred EEEEECCCCCeeEEEccCC----------CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEE----ecc------
Confidence 9999999999999999987 78999999999999999999999999999643 22222 222
Q ss_pred ceeEEEEEEecC------CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 498 TVVVTLVALSQD------GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 498 ~~~v~~~~~sp~------g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...+.+++|+|. +..+++++ .|+.|++||+.+.+....+ .+| ...|.+++|+|++++|+
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~~wd~~~~~~~~~~-----~~h-~~~v~~~~~sp~g~~l~ 212 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAG---------NDKMVKAWNLNQFQIEADF-----IGH-NSNINTLTASPDGTLIA 212 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-CSCEEEEEECTTSSEEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEe---------CCCEEEEEECCcchhheee-----cCC-CCcEEEEEEcCCCCEEE
Confidence 677999999985 45899998 8999999999887654443 688 89999999999999999
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec-----
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG----- 646 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~----- 646 (762)
+++.||.|++||+.+++....+. +...|.+++|+|++.+|+++.++.+++|+++.+..+..+.
T Consensus 213 s~~~dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~ 280 (319)
T 3frx_A 213 SAGKDGEIMLWNLAAKKAMYTLS------------AQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAG 280 (319)
T ss_dssp EEETTCEEEEEETTTTEEEEEEE------------CCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTT
T ss_pred EEeCCCeEEEEECCCCcEEEEec------------CCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccc
Confidence 99999999999999887665542 3568999999999999999988889999999887776664
Q ss_pred ---cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ---ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ---~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|...+.+++|+|||++|++++.|+. |++||+.++
T Consensus 281 ~~~~~~~~v~~~~~spdg~~l~sg~~Dg~--i~vWd~~t~ 318 (319)
T 3frx_A 281 YSKAAEPHAVSLAWSADGQTLFAGYTDNV--IRVWQVMTA 318 (319)
T ss_dssp CCGGGCCCEEEEEECTTSSEEEEEETTSC--EEEEEEEEC
T ss_pred cccCcCcceeEEEECCCCCEEEEeecCce--EEEEEEeec
Confidence 24566899999999999999999998 999999875
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=331.03 Aligned_cols=319 Identities=12% Similarity=0.136 Sum_probs=270.8
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
+...|.+++|+|||++++++..++.+..|...... ......+|...|.++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~h~~~v~~~ 57 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHA------------------------------RQINTLNHGEVVCAV 57 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEE------------------------------EEEEEECCSSCCCEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcc------------------------------ccceeccCCCceEEE
Confidence 45689999999999999988877766555432221 122344799999999
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEE
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRS 431 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~ 431 (762)
+|+|++++|++++ |+.|++||+.+++... ...+...+.+++|+|+++++++++.++.|++||+.+++ ....
T Consensus 58 ~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~ 136 (337)
T 1gxr_A 58 TISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE 136 (337)
T ss_dssp EECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE
T ss_pred EEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeee
Confidence 9999999999998 9999999998876422 22678899999999999999999999999999999876 5556
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+..+. ..+.+++|+|+++++++++.|+.|++||+.+++....+.. | ...+.+++|+|+++
T Consensus 137 ~~~~~----------~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~------~~~i~~~~~~~~~~ 196 (337)
T 1gxr_A 137 LTSSA----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG----H------TDGASCIDISNDGT 196 (337)
T ss_dssp EECSS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC----C------SSCEEEEEECTTSS
T ss_pred cccCC----------CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec----c------cCceEEEEECCCCC
Confidence 66665 7889999999999999999999999999998765554432 2 66799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
+|++++ .++.|++||+.+++....+ .+ ...+.+++|+|+++++++++.|+.|++||+.+++...
T Consensus 197 ~l~~~~---------~dg~i~~~d~~~~~~~~~~------~~-~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 197 KLWTGG---------LDNTVRSWDLREGRQLQQH------DF-TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp EEEEEE---------TTSEEEEEETTTTEEEEEE------EC-SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred EEEEEe---------cCCcEEEEECCCCceEeee------cC-CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 999998 8899999999988765554 24 6789999999999999999999999999998876432
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
. ..|...|.+++|+|++++|++++ |+.|++||+.+++.+... .|...+.+++|+|++++|++++.|
T Consensus 261 ~------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d 327 (337)
T 1gxr_A 261 L------------HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327 (337)
T ss_dssp E------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETT
T ss_pred E------------cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCC
Confidence 2 35788999999999999999998 999999999999888655 488899999999999999999999
Q ss_pred CCCeEEEEEC
Q 040987 671 SKPQLSVWNM 680 (762)
Q Consensus 671 ~~~~v~vwd~ 680 (762)
|. |++|++
T Consensus 328 g~--i~iw~~ 335 (337)
T 1gxr_A 328 KK--ATVYEV 335 (337)
T ss_dssp SC--EEEEEE
T ss_pred Ce--EEEEEE
Confidence 98 999996
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=324.30 Aligned_cols=297 Identities=12% Similarity=0.147 Sum_probs=252.3
Q ss_pred eeeeccCCCceEEEECCCC-CEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 229 GVTLAEMKEPQVITISSSG-KYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg-~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
..+.+|.+.|.+++|+|++ ++|++ +.|+.|++|++.............+.+|...|.+++|+|++++|++|+.|++|+
T Consensus 11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~ 90 (319)
T 3frx_A 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLR 90 (319)
T ss_dssp EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEE
Confidence 5677899999999999975 78874 579999999997654321223456779999999999999999999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+||+.+++ .+..+.+|...|.+++|+|++++|++++.|++|++||++...
T Consensus 91 ~wd~~~~~------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~ 140 (319)
T 3frx_A 91 LWDVATGE------------------------------TYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140 (319)
T ss_dssp EEETTTTE------------------------------EEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred EEECCCCC------------------------------eeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence 99997764 346788999999999999999999999999999999998766
Q ss_pred eeccCCCCCCeEEEEeCCC------CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 387 KKFLPRIGSPLLYFTESPD------PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 387 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
...+..|...+.++.++|+ +..+++++.|+.|++||+.+++....+.+|. ..|.+++|+|++++
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~----------~~v~~~~~sp~g~~ 210 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHN----------SNINTLTASPDGTL 210 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCC----------SCEEEEEECTTSSE
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCC----------CcEEEEEEcCCCCE
Confidence 6677889999999999985 4589999999999999999999999998887 78999999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
|++++.|+.|++||+.+++.+..+.. ...+.+++|+|++.+++++. . ..+++|++....
T Consensus 211 l~s~~~dg~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~sp~~~~la~~~---------~-~~i~v~~~~~~~ 269 (319)
T 3frx_A 211 IASAGKDGEIMLWNLAAKKAMYTLSA-----------QDEVFSLAFSPNRYWLAAAT---------A-TGIKVFSLDPQY 269 (319)
T ss_dssp EEEEETTCEEEEEETTTTEEEEEEEC-----------CSCEEEEEECSSSSEEEEEE---------T-TEEEEEEETTEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecC-----------CCcEEEEEEcCCCCEEEEEc---------C-CCcEEEEeCcCe
Confidence 99999999999999998877666543 34699999999999999986 3 469999998765
Q ss_pred ceeEEEEEe---ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 541 KEFTLSTIV---YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 541 ~~~~~~~~~---~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
....+.... ...| ...+.+++|+|||++|++++.|+.|++||+.++
T Consensus 270 ~~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 270 LVDDLRPEFAGYSKAA-EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECCCCTTCCGGG-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred eeeccCccccccccCc-CcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 544432110 1234 567899999999999999999999999999754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=326.40 Aligned_cols=309 Identities=10% Similarity=0.103 Sum_probs=238.5
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCc
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGV 337 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (762)
.+.|++.... ...|...|.+++|+|||++|++++ |+++++||..... +... .
T Consensus 16 ~r~w~~~~~~---------~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-~~~~---~-------------- 67 (344)
T 4gqb_B 16 AREWNLPPNA---------PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-FKDP---C-------------- 67 (344)
T ss_dssp -------CCS---------CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-ESSG---G--------------
T ss_pred ccccCCCCCC---------cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeee-eccc---c--------------
Confidence 3567665443 235677899999999999998877 7788888742110 0000 0
Q ss_pred ccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-----ccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 338 RDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-----FLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-----~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.............|...|.+++|+|++ .|++++.||+|++||+++++.. ....|...|.+++|+|+|++|+++
T Consensus 68 -~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sg 145 (344)
T 4gqb_B 68 -AAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSG 145 (344)
T ss_dssp -GTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred -ccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEE
Confidence 000001122334567789999999985 7889999999999999988753 234788999999999999999999
Q ss_pred ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
+.|+.|++||+.+++.+..+.+|. +.|.+++|+|++. ++++++.|+.|++||+++++....+.....
T Consensus 146 s~d~~i~iwd~~~~~~~~~~~~h~----------~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-- 213 (344)
T 4gqb_B 146 SKDICIKVWDLAQQVVLSSYRAHA----------AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP-- 213 (344)
T ss_dssp ETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------
T ss_pred eCCCeEEEEECCCCcEEEEEcCcC----------CceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee--
Confidence 999999999999999999999987 7899999999885 688999999999999999887766543222
Q ss_pred cCCCCcceeEEEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-Ce
Q 040987 492 QPGDDVTVVVTLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RA 569 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~ 569 (762)
...+.+++|+|+ +++|++++ .|+.|++||+++++.+..+ .+| ...|++++|+|++ ++
T Consensus 214 ------~~~~~~~~~~p~~~~~l~sg~---------~dg~v~~wd~~~~~~~~~~-----~~h-~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 214 ------GYLPTSLAWHPQQSEVFVFGD---------ENGTVSLVDTKSTSCVLSS-----AVH-SQCVTGLVFSPHSVPF 272 (344)
T ss_dssp ------CCCEEEEEECSSCTTEEEEEE---------TTSEEEEEESCC--CCEEE-----ECC-SSCEEEEEECSSSSCC
T ss_pred ------eccceeeeecCCCCcceEEec---------cCCcEEEEECCCCcEEEEE-----cCC-CCCEEEEEEccCCCeE
Confidence 456899999995 56788888 8899999999998887665 578 8999999999998 57
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCCeE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~~~ 641 (762)
|++++.|++|+|||+.+++.... .+|...|++++|+|+++ +|++++ |++|++|++.+...
T Consensus 273 lasgs~D~~i~vwd~~~~~~~~~------------~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSELFRS------------QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp EEEEETTSCEEEECTTCCEEEEE------------CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred EEEEeCCCeEEEEECCCCcEEEE------------cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 99999999999999988765432 36899999999999986 567887 99999999987543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-39 Score=333.30 Aligned_cols=299 Identities=16% Similarity=0.242 Sum_probs=248.5
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-CCC------------------CCCeEEEEeCCCCCeEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-PRI------------------GSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-~~~------------------~~~v~~~~~s~~~~~l~~ 411 (762)
+|...|.+++|+|||++|++++ ++.+++|++.+++.... ..+ ...|.+++|+|+|++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999986 68999999998876432 211 124899999999999999
Q ss_pred EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++....+..
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~----------~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~----- 205 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHE----------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI----- 205 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----
T ss_pred EcCCCeEEEEECCCCcEEEEEccCC----------CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-----
Confidence 9999999999999999999999887 7899999999999999999999999999998876554432
Q ss_pred cCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE--eecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI--VYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~h~~~~v~~~~~spd~~ 568 (762)
...+.+++|+| ++++|++++ .|+.|++||+.++.....+... ...+| ...|.+++|+|+++
T Consensus 206 ------~~~v~~~~~~~~~~~~l~~~s---------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 206 ------EDGVTTVAVSPGDGKYIAAGS---------LDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQ 269 (393)
T ss_dssp ------SSCEEEEEECSTTCCEEEEEE---------TTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSS
T ss_pred ------CCCcEEEEEECCCCCEEEEEc---------CCCcEEEEECCCCcEEEeecccccCCCCC-CCCEEEEEECCCCC
Confidence 45689999999 899999999 8999999999988766554321 12578 88999999999999
Q ss_pred eEEEEeCCCcEEEEEccccccccccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
+|++++.|+.|++||+.+........ .....+.....+|...|.+++|+|++++|++|+ |+.|++||+.+++++..+.
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 99999999999999998754432211 111224445567899999999999999999998 9999999999999999999
Q ss_pred cccCceeEEEEeC------CCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ETLTPIMNMSFVG------SSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ~~~~~v~~~~~s~------dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
+|...|.+++|++ ++++|++++.|+. |++|++...
T Consensus 350 ~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~--i~iW~~~~~ 390 (393)
T 1erj_A 350 GHRNSVISVAVANGSSLGPEYNVFATGSGDCK--ARIWKYKKI 390 (393)
T ss_dssp CCSSCEEEEEECSSCTTCTTCEEEEEEETTSE--EEEEEEEEC
T ss_pred CCCCCEEEEEecCCcCcCCCCCEEEEECCCCc--EEECccccc
Confidence 9999999999986 6889999999998 999998653
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=343.99 Aligned_cols=338 Identities=13% Similarity=0.160 Sum_probs=275.8
Q ss_pred CeEEEEecCCccee-eeecCcccccCCceeecCCC-EEEEEe-CCEEEEEEc----ccce------EEeeecC-------
Q 040987 53 GLCRTAEYPAVNSK-MIRGGRSYVSSPPAFSNDVK-RLLVCT-SNTVSIFST----STGL------QISSLEG------- 112 (762)
Q Consensus 53 g~i~~~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~-~la~~~-~~~i~iwd~----~~~~------~~~~l~~------- 112 (762)
..+.+|+....... ....|.+.|.+ ++|+|+|+ +||+++ |+.|+|||+ .+++ ....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKEIVKLDNIVS-STWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSAS 103 (425)
T ss_dssp ---------CCCEECEEEEECSCCSE-EEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC--
T ss_pred cccccccchhhhhheeeeeccCceEE-EEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccc
Confidence 44567887653333 33566799997 99999999 999999 699999999 8888 4555544
Q ss_pred ---CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceE
Q 040987 113 ---HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 113 ---h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
|...|++++|+|++ .+|++++.|+.|++|| .+++.+..+..|. ++.++.| .+++.. +
T Consensus 104 ~~~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~--------~~~~~~---l 164 (425)
T 1r5m_A 104 SGKTTNQVTCLAWSHDG-------NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKW--------NKDGTH---I 164 (425)
T ss_dssp ----CBCEEEEEECTTS-------SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEE--------CTTSSE---E
T ss_pred ccCCCCceEEEEEcCCC-------CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEE--------CCCCCE---E
Confidence 78899999999999 7889999999999999 7788888888776 8888877 333321 1
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC---------------ceEEEECCCCCEEEEE
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE---------------PQVITISSSGKYFGIR 253 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~spdg~~la~~ 253 (762)
++++.|+.|++||+.+++.+ .....+... +.+++|+|++.+++++
T Consensus 165 -------------------~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (425)
T 1r5m_A 165 -------------------ISMDVENVTILWNVISGTVM-QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG 224 (425)
T ss_dssp -------------------EEEETTCCEEEEETTTTEEE-EEECCC---------------CCCBSCCEEEETTEEEEEC
T ss_pred -------------------EEEecCCeEEEEECCCCcEE-EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEc
Confidence 55678999999999999887 344444444 9999999998877788
Q ss_pred eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccC
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
.++.|++||+.+++.. .....|...|.+++|+|++++|++++.||.|++||+..++
T Consensus 225 ~~g~i~~~d~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------- 280 (425)
T 1r5m_A 225 PKGAIFVYQITEKTPT-----GKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------------------- 280 (425)
T ss_dssp GGGCEEEEETTCSSCS-----EEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS-------------------
T ss_pred CCCeEEEEEcCCCcee-----eeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc-------------------
Confidence 9999999999988754 5566899999999999999999999999999999987653
Q ss_pred CCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEE
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
....+..|...|.+++|+|++ ++++++.|+.|++||+.+++... +..+...+.+++|+|++++|+++
T Consensus 281 -----------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 348 (425)
T 1r5m_A 281 -----------SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVA 348 (425)
T ss_dssp -----------CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEE
T ss_pred -----------cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEE
Confidence 345677899999999999999 99999999999999999888754 45678899999999999999999
Q ss_pred ecCCcEEEEEcCCce--------------------EEEEEccCCCCCCCCCcccC--ceeeEEEeCCCCEEEEeecCceE
Q 040987 413 CADNQVHLLKMPSME--------------------IIRSISGIKLPCPLPEEYKG--LCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~--------------------~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
+.++.|++||+.+++ .+..+.++. . .|.+++|+|++++|++++.||.|
T Consensus 349 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~dg~i 418 (425)
T 1r5m_A 349 FMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQ----------DNDYIFDLSWNCAGNKISVAYSLQEG 418 (425)
T ss_dssp ETTSCEEEEECHHHHC--------------CEECCEEEEECCTT----------CCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred ECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcc----------cCCceEEEEccCCCceEEEEecCceE
Confidence 999999999999887 788888775 4 89999999999999999999999
Q ss_pred EEEEcC
Q 040987 471 HFYSLL 476 (762)
Q Consensus 471 ~i~d~~ 476 (762)
++||+.
T Consensus 419 ~iw~~~ 424 (425)
T 1r5m_A 419 SVVAIP 424 (425)
T ss_dssp EEEECC
T ss_pred EEEeec
Confidence 999985
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=341.30 Aligned_cols=308 Identities=17% Similarity=0.251 Sum_probs=254.8
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i 420 (762)
+..+...+.+|.+.|++++|+|++++|++++.|++|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.+++
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i 134 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI 134 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence 33566789999999999999999999999999999999999988774 46678888999999999999999999999999
Q ss_pred EEcCCce-------EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 421 LKMPSME-------IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 421 ~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
|++.+.. ....+.+|. +.+.++.|.|+ +..|++++.|+.|++||+.+++.+..+....
T Consensus 135 w~~~~~~~~~~~~~~~~~~~gh~----------~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~---- 200 (380)
T 3iz6_a 135 FNLSSQADRDGNMPVSRVLTGHK----------GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEF---- 200 (380)
T ss_dssp EECCCCSSCCCSSTTCCBCCCCS----------SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCS----
T ss_pred EECCCCccccCCccceeeccCCC----------cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeeccc----
Confidence 9987532 223344444 78899999996 4579999999999999999987765542211
Q ss_pred CCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCC-CceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 493 PGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ-NKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
...|...+.+++|++ ++++|++++ .|+.|++||++.. ..... +.+| ...|.+++|+|++++|
T Consensus 201 -~~~h~~~v~~~~~~~~~~~~l~sgs---------~D~~v~~wd~~~~~~~~~~-----~~~h-~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 201 -PSGHTADVLSLSINSLNANMFISGS---------CDTTVRLWDLRITSRAVRT-----YHGH-EGDINSVKFFPDGQRF 264 (380)
T ss_dssp -SSSCCSCEEEEEECSSSCCEEEEEE---------TTSCEEEEETTTTCCCCEE-----ECCC-SSCCCEEEECTTSSEE
T ss_pred -CCCCccCeEEEEeecCCCCEEEEEE---------CCCeEEEEECCCCCcceEE-----ECCc-CCCeEEEEEecCCCeE
Confidence 122377899999987 889999999 8999999999844 33333 3688 8999999999999999
Q ss_pred EEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe----
Q 040987 571 VSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI---- 645 (762)
Q Consensus 571 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l---- 645 (762)
++++.|++|++||+.++.....+.... .....+...|++++|+|+|++|++|+ ||.|++||+.+++.+..+
T Consensus 265 ~s~s~D~~i~lwd~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 340 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGHQLQVYNREP----DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQ 340 (380)
T ss_dssp EEECSSSCEEEEETTTTEEEEEECCCC----SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSC
T ss_pred EEEcCCCeEEEEECCCCcEEEEecccc----cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEeccc
Confidence 999999999999999887665442000 00112234589999999999999998 999999999999888777
Q ss_pred ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 646 GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
.+|.+.|.+++|+|||++|++++.|+. |++|++..++.
T Consensus 341 ~~h~~~v~~l~~s~dg~~l~sgs~D~~--i~iW~~~~~~~ 378 (380)
T 3iz6_a 341 NSHEGRISCLGLSSDGSALCTGSWDKN--LKIWAFSGHRK 378 (380)
T ss_dssp SSCCCCCCEEEECSSSSEEEEECTTSC--EEEEECCSSSS
T ss_pred CCCCCceEEEEECCCCCEEEEeeCCCC--EEEEecCCCcc
Confidence 679999999999999999999999998 99999987643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-38 Score=368.91 Aligned_cols=541 Identities=7% Similarity=-0.036 Sum_probs=375.5
Q ss_pred EEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-C------CEEEEEEcccceEEeeecCCccce
Q 040987 45 IFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-S------NTVSIFSTSTGLQISSLEGHKAPV 117 (762)
Q Consensus 45 ~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~------~~i~iwd~~~~~~~~~l~~h~~~V 117 (762)
.+|..+. +.|++|+..+++...+.+|...+.+ ++|||||++||+++ + ..|++||+.+++ .+.+..|...+
T Consensus 26 ~iaf~~~-~~l~~~~~~gg~~~~lt~~~~~v~~-~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~ 102 (1045)
T 1k32_A 26 RIIFVCC-DDLWEHDLKSGSTRKIVSNLGVINN-ARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKS 102 (1045)
T ss_dssp EEEEEET-TEEEEEETTTCCEEEEECSSSEEEE-EEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEE
T ss_pred EEEEEEC-CcEEEEECCCCcEEEeeeCCCcccC-eEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcc
Confidence 4444433 7899999999999999999999997 99999999999885 2 489999998877 67788999988
Q ss_pred -------eEEEEeCCCCcccceeeeEEeeecC------CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCC
Q 040987 118 -------TTVIVVPASTPATKILSYCWTASLD------GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 118 -------~~v~~s~~~~~~~~l~~~l~s~s~d------~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 184 (762)
.+++||||| +++++++.+ ..|.+||+.+++... +..+ +...+.| ++ +
T Consensus 103 ~~~~~~~~~~~~SpDg-------~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~-~~~~~~~--------sp-G-- 162 (1045)
T 1k32_A 103 TGRRMFTDVAGFDPDG-------NLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG-PATHILF--------AD-G-- 162 (1045)
T ss_dssp ETTEECSEEEEECTTC-------CEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC-SCSEEEE--------ET-T--
T ss_pred cccccccccccCCCCC-------EEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC-Ccceeee--------CC-C--
Confidence 999999999 566777754 458888887776533 2222 1122222 11 1
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEc
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKV 263 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~ 263 (762)
+++... .... ...|.. ..+. ....+|....+... ..+.+|...+.+++|+++ ++++++ .++.+.||.+
T Consensus 163 --~l~~~~-~~~~-~~~~~~---~~g~--~~~~lw~~~~~~~~-~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 163 --RRVIGR-NTFE-LPHWKG---YRGG--TRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp --EEEEEE-SCSC-CTTSTT---CCST--TCCEEEEEEETTEE-EEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred --EEEEec-cCCC-cccccc---ccCC--CcCCEEEECCCCCe-EECcCCCCcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 122111 0000 000000 1223 34455543333333 344889999999999998 444444 5678888876
Q ss_pred cCc-hhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 264 PDV-EAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 264 ~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
... ... ..+..|. .+...+|+|||++|+++ .++.|++|++...+.. ..... .
T Consensus 232 ~~~g~~~-----~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~-------------------~ 284 (1045)
T 1k32_A 232 DLDGKDL-----RKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIG-------------------D 284 (1045)
T ss_dssp ETTSCSC-----EECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEE-ECCCC-------------------C
T ss_pred eCCCCcc-----eEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCceEee-eeccC-------------------c
Confidence 532 211 2333443 46778999999999887 5899999998433211 10000 0
Q ss_pred cccceeeeccccceeEEEEe-cCCCEEEEEecCCeEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCCcEE-
Q 040987 343 ADLCTTWHWHPSEVSVLIFS-SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADNQVH- 419 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~~i~- 419 (762)
......+..|...+.+++|+ |||++|++++ ++.+++|+..+++...+..+.. .+..++|+ ||+.+++++.++.+.
T Consensus 285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLG 362 (1045)
T ss_dssp CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEE
T ss_pred ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEE
Confidence 00011223466779999999 9999999887 7899999999888777777777 89999999 999999988888888
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+|++.+++... +.++. ..+..++|+|||++|++++.++.|++||+.+++....... + ..
T Consensus 363 ~~d~~~~~~~~-l~~~~----------~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~----~------~~ 421 (1045)
T 1k32_A 363 IYDYRTGKAEK-FEENL----------GNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS----R------EA 421 (1045)
T ss_dssp EEETTTCCEEE-CCCCC----------CSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC----S------SS
T ss_pred EEECCCCCceE-ecCCc----------cceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC----C------CC
Confidence 99998776543 33443 6789999999999999999999999999998865443321 1 45
Q ss_pred eEEEEEEecCCCeEEEEeeec--cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKL--AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~--~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
.+..++|+|||++|++++.+. +. ....++.|++||+.+++ ...+ ..| ...+..++|+|||++|++++.++
T Consensus 422 ~v~~~~~SpDG~~la~~~~~~~~~~-~~~~~~~i~l~d~~~g~-~~~l-----~~~-~~~~~~~~~spdG~~l~~~s~~~ 493 (1045)
T 1k32_A 422 MITDFTISDNSRFIAYGFPLKHGET-DGYVMQAIHVYDMEGRK-IFAA-----TTE-NSHDYAPAFDADSKNLYYLSYRS 493 (1045)
T ss_dssp CCCCEEECTTSCEEEEEEEECSSTT-CSCCEEEEEEEETTTTE-EEEC-----SCS-SSBEEEEEECTTSCEEEEEESCC
T ss_pred CccceEECCCCCeEEEEecCccccc-cCCCCCeEEEEECCCCc-EEEe-----eCC-CcccCCceEcCCCCEEEEEeccc
Confidence 678899999999999887320 00 00134699999999875 3222 456 67788999999999999999888
Q ss_pred cEEEEEccccccccc---------ccC-------------------Cce----eeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 578 DFKVWICNDELQQKD---------LQS-------------------SGW----SCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~---------~~~-------------------~~~----~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
...+|+......... +.. ..+ ........+...+..++++|||+++++
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~ 573 (1045)
T 1k32_A 494 LDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYS 573 (1045)
T ss_dssp CCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEE
T ss_pred CCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEE
Confidence 777776543221000 000 000 011122345677899999999998875
Q ss_pred ------------E-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 626 ------------A-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 626 ------------~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
. . ...|++||+.+++..... ..+..++|||||++|++++.|+ |++||+.+++
T Consensus 574 ~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----~~v~~~~~S~DG~~l~~~~~~~---i~~~d~~~~~ 639 (1045)
T 1k32_A 574 VPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK----NNLTDLRLSADRKTVMVRKDDG---KIYTFPLEKP 639 (1045)
T ss_dssp CCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE----EEEEEEEECTTSCEEEEEETTS---CEEEEESSCT
T ss_pred ecccCcccccccccCCCceEEEEECCCCcEEEee----cCcceEEECCCCCEEEEEcCCc---EEEEeCccCc
Confidence 1 1 457899999988754332 5588999999999999998874 9999999887
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=330.14 Aligned_cols=321 Identities=14% Similarity=0.203 Sum_probs=271.2
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
+.+.+.+++|+|||++++++ .++.+.+|........ ....+|...|.+++|+|++++|++++ ||.|++|++.+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-----INTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-----EEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-----ceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCC
Confidence 45678999999999999855 4555555544443321 33447999999999999999999998 99999999976
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeee--ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH--WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--- 387 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--- 387 (762)
++... ....+. +|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 82 ~~~~~---------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~ 134 (337)
T 1gxr_A 82 PGNKS---------------------------PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134 (337)
T ss_dssp TTCCS---------------------------CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEE
T ss_pred CCcee---------------------------eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCccee
Confidence 54221 122333 6889999999999999999999999999999998873
Q ss_pred eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 388 KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.....+...+.+++|+|+++++++++.++.|++||+.+++....+..|. ..+.+++|+|+++++++++.|
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~~~l~~~~~d 204 (337)
T 1gxr_A 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT----------DGASCIDISNDGTKLWTGGLD 204 (337)
T ss_dssp EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEEEEEETT
T ss_pred eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc----------CceEEEEECCCCCEEEEEecC
Confidence 3456678889999999999999999999999999999999999998876 789999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+.|++||+.+++....+.. ...+.+++|+|+++++++++ .++.|++||+.+.+.. .
T Consensus 205 g~i~~~d~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~~---------~~~~i~~~~~~~~~~~-~--- 260 (337)
T 1gxr_A 205 NTVRSWDLREGRQLQQHDF-----------TSQIFSLGYCPTGEWLAVGM---------ESSNVEVLHVNKPDKY-Q--- 260 (337)
T ss_dssp SEEEEEETTTTEEEEEEEC-----------SSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTSSCEE-E---
T ss_pred CcEEEEECCCCceEeeecC-----------CCceEEEEECCCCCEEEEEc---------CCCcEEEEECCCCCeE-E---
Confidence 9999999998876655432 55699999999999999998 8899999999987642 2
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
...| ...|.+++|+|++++|++++.||.|++||+.+++..... .|...+.+++|+|++++|++++
T Consensus 261 --~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 261 --LHLH-ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS------------KESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp --ECCC-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE------------ECSSCEEEEEECTTSCEEEEEE
T ss_pred --EcCC-ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe------------cCCCcEEEEEECCCCCEEEEec
Confidence 3577 889999999999999999999999999999987765333 3678999999999999999998
Q ss_pred -CCeEEEEeC
Q 040987 628 -ETVITLWDP 636 (762)
Q Consensus 628 -d~~i~iwd~ 636 (762)
||.|++|++
T Consensus 326 ~dg~i~iw~~ 335 (337)
T 1gxr_A 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 999999996
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=328.78 Aligned_cols=292 Identities=14% Similarity=0.197 Sum_probs=242.9
Q ss_pred cceeeeccccceeEEEE-----ec-CCCEEEEEecCCeEEEEecCCCc-------e-eccCCCCCCeEEEEeCCCCCeEE
Q 040987 345 LCTTWHWHPSEVSVLIF-----SS-DGAYLYSGGKEGVLVVWQLDTGK-------K-KFLPRIGSPLLYFTESPDPSLSS 410 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~-----s~-~g~~l~s~~~dg~i~~wd~~~~~-------~-~~~~~~~~~v~~~~~s~~~~~l~ 410 (762)
....+.+|.+.|++++| ++ ++++|++++.|++|++||+.+.+ . ..+..|...|.+++|+|++.+++
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~ 92 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI 92 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence 45688999999999999 76 89999999999999999997643 1 34677889999999999999999
Q ss_pred EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 411 ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 411 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
+++.|+.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.... .... .
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~----------~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-~~~~----~- 156 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQ----------SEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-KFSS----A- 156 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCC----------SCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-EEEC----C-
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCC----------CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-eeee----e-
Confidence 99999999999999999999999887 789999999999999999999999999997332 1111 0
Q ss_pred ccCCCCcceeEEEEEEecCC----------CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEE
Q 040987 491 HQPGDDVTVVVTLVALSQDG----------SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g----------~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~ 560 (762)
....|...+.+++|+|++ .+|++++ .|+.|++||.. ...... +.+| ...|.+
T Consensus 157 --~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~-~~~~~~-----~~~h-~~~v~~ 218 (343)
T 2xzm_R 157 --EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG---------WDGRLKVWNTN-FQIRYT-----FKAH-ESNVNH 218 (343)
T ss_dssp --TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEE---------TTSEEEEEETT-TEEEEE-----EECC-SSCEEE
T ss_pred --cccCCCceeeeeeeccccccccccCCCCCEEEEEc---------CCCEEEEEcCC-CceeEE-----EcCc-cccceE
Confidence 011236779999999987 7899998 89999999943 322222 3678 889999
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC
Q 040987 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN 639 (762)
Q Consensus 561 ~~~spd~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~ 639 (762)
++|+|+|++|++++.|+.|++||+..... ...+ .+...|.+++|+|++++++++.|+.|++||+.++
T Consensus 219 ~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~------------~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 219 LSISPNGKYIATGGKDKKLLIWDILNLTYPQREF------------DAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQ 286 (343)
T ss_dssp EEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE------------ECSSCEEEEEECSSSCEEEEEESSCEEEEESSSC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcccceee------------cCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCC
Confidence 99999999999999999999999954322 2111 1356799999999999998888999999999887
Q ss_pred eEEE--Eec-----------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 640 VLVA--VIG-----------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 640 ~~~~--~l~-----------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+... .+. +|...|.+++|+|+|++|++++.||. |++|++++++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~--v~~w~~~~g~ 342 (343)
T 2xzm_R 287 SKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV--IRTFSFETSA 342 (343)
T ss_dssp CSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE--EEEEEEEEEE
T ss_pred CCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCce--EEEEEEEccC
Confidence 6443 333 67788999999999999999999998 9999987653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=321.16 Aligned_cols=302 Identities=15% Similarity=0.228 Sum_probs=235.3
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--e-cc-CC-CCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--K-FL-PR-IGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--~-~~-~~-~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
+++..+.+|...|.+++|+++ +|++++.|++|++||+.++.. . .+ .. |...|.+++|+|++++|++++.|+.|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v 82 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV 82 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence 356788999999999999987 999999999999999987532 2 22 33 88899999999999999999999999
Q ss_pred EEEEcCC-------ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 419 HLLKMPS-------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 419 ~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
++||+.. .+.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+...............|
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~~h~----------~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h 152 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIEGHE----------NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH 152 (330)
T ss_dssp EEEEC-------CCCEEEEEEC--------------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC
T ss_pred EEEEcccCcCccccceeEEEEcCCC----------CcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC
Confidence 9999853 45667777776 789999999999999999999999999995432222222222333
Q ss_pred cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC--CCe
Q 040987 492 QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN--RRA 569 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd--~~~ 569 (762)
...|.+++|+|++++|++++ .|++|++||..++.... + ..+.+| ...|.+++|+|+ +.+
T Consensus 153 ------~~~v~~v~~~p~~~~l~s~s---------~D~~i~iW~~~~~~~~~-~--~~~~~h-~~~v~~~~~~~~~~~~~ 213 (330)
T 2hes_X 153 ------SQDVKHVIWHPSEALLASSS---------YDDTVRIWKDYDDDWEC-V--AVLNGH-EGTVWSSDFDKTEGVFR 213 (330)
T ss_dssp ------SSCEEEEEECSSSSEEEEEE---------TTSCEEEEEEETTEEEE-E--EEECCC-SSCEEEEEECCSSSSCE
T ss_pred ------CCceEEEEECCCCCEEEEEc---------CCCeEEEEECCCCCeeE-E--EEccCC-CCcEEEEEecCCCCeeE
Confidence 67899999999999999999 89999999987653111 1 124789 899999999998 678
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeeccc-CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe--EEE-E
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY-KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV--LVA-V 644 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~--~~~-~ 644 (762)
|++++.|++|++||+.++..... ..|.+...... |...|.+++|++++ +|++++ |+.|++||..+++ .+. .
T Consensus 214 l~s~s~D~~v~iw~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~ 289 (330)
T 2hes_X 214 LCSGSDDSTVRVWKYMGDDEDDQ---QEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR 289 (330)
T ss_dssp EEEEETTSCEEEEEEEEECTTSC---EEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCeEEEEEecCCCcccc---ceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc
Confidence 99999999999999976543211 13344444443 88999999999776 677776 9999999998874 333 3
Q ss_pred eccccC-ceeEEEEeC--CCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLT-PIMNMSFVG--SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~-~v~~~~~s~--dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|.. .|.+++|+| ++++|++++.|+. |++||+++
T Consensus 290 ~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~--v~~W~~~~ 328 (330)
T 2hes_X 290 ALCHGVYEINVVKWLELNGKTILATGGDDGI--VNFWSLEK 328 (330)
T ss_dssp SCTTTTSCEEEEEEC-----CCEEEEETTSE--EEEEEC--
T ss_pred ccccccceEEEEEEecCCCceEEEEecCCCc--EEEEEecc
Confidence 356876 899999999 7999999999998 99999875
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=322.16 Aligned_cols=251 Identities=13% Similarity=0.131 Sum_probs=207.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+.+|..
T Consensus 70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~------------------------------~~~~~~~h~~ 119 (343)
T 2xzm_R 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGT------------------------------TYKRFVGHQS 119 (343)
T ss_dssp EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSC------------------------------EEEEEECCCS
T ss_pred chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc------------------------------EEEEEcCCCC
Confidence 3456899999999999999999999999999999997764 3467889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc---CCCCCCeEEEEeCCCC----------CeEEEEecCCcEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL---PRIGSPLLYFTESPDP----------SLSSISCADNQVHLL 421 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~i~ 421 (762)
.|.+++|+|++++|++++.|++|++||+........ ..+...+.+++|+|++ .++++++.|+.|++|
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 999999999999999999999999999985443332 3677889999999987 789999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~ 500 (762)
|. ..+....+.+|. ..|.+++|+|++++|++++.|+.|++||+..... ...+.. ...
T Consensus 200 d~-~~~~~~~~~~h~----------~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~-----------~~~ 257 (343)
T 2xzm_R 200 NT-NFQIRYTFKAHE----------SNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFDA-----------GST 257 (343)
T ss_dssp ET-TTEEEEEEECCS----------SCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEEC-----------SSC
T ss_pred cC-CCceeEEEcCcc----------ccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeecC-----------CCc
Confidence 94 467777788876 7899999999999999999999999999954432 222211 345
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEE------eecCCCCCceEEEEEcCCCCeEEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTI------VYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~------~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
|.+++|+|++++++++ .|+.|++|++.+.+... .+... ...+| ...|.+++|+|+|++|++
T Consensus 258 v~~v~~sp~~~~la~~----------~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~s 326 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVG----------TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK-NPQCTSLAWNALGKKLFA 326 (343)
T ss_dssp EEEEEECSSSCEEEEE----------ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS-CCCEEEEEECSSSCCEEE
T ss_pred EEEEEECCCCCEEEEE----------CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC-CCceEEEEECCCCCeEEE
Confidence 9999999999988766 45679999998876543 22110 01257 778999999999999999
Q ss_pred EeCCCcEEEEEccccc
Q 040987 573 SSYGGDFKVWICNDEL 588 (762)
Q Consensus 573 ~~~dg~i~iwd~~~~~ 588 (762)
|+.||.|++|++.++.
T Consensus 327 g~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 327 GFTDGVIRTFSFETSA 342 (343)
T ss_dssp EETTSEEEEEEEEEEE
T ss_pred ecCCceEEEEEEEccC
Confidence 9999999999997653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=317.47 Aligned_cols=289 Identities=19% Similarity=0.257 Sum_probs=249.1
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.+ ++|+|+|++||+++ |+.|+|||+.+++....+.+|...|.+++|+|++ .+|++++.|
T Consensus 15 ~~~~~~gh~~~v~~-~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~s~~~d 86 (312)
T 4ery_A 15 LKFTLAGHTKAVSS-VKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS-------NLLVSASDD 86 (312)
T ss_dssp EEEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SEEEEEETT
T ss_pred eEEEEcccCCcEEE-EEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCC-------CEEEEECCC
Confidence 34567899999997 99999999999999 7999999999999999999999999999999999 688999999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
++|++||+.+++++..+.
T Consensus 87 ~~i~vwd~~~~~~~~~~~-------------------------------------------------------------- 104 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLK-------------------------------------------------------------- 104 (312)
T ss_dssp SEEEEEETTTCCEEEEEE--------------------------------------------------------------
T ss_pred CEEEEEECCCCcEEEEEc--------------------------------------------------------------
Confidence 999999999988766544
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
+|...|.+++|+|++++|+++ .|+.|++||+.+++.. ..+..|...|.+++|+|++++|++++.
T Consensus 105 ----------~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~ 169 (312)
T 4ery_A 105 ----------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL-----KTLPAHSDPVSAVHFNRDGSLIVSSSY 169 (312)
T ss_dssp ----------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ----------CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEE-----EEecCCCCcEEEEEEcCCCCEEEEEeC
Confidence 345677889999999999855 7999999999988754 566789999999999999999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
||.|++||+.+++.+. .....+...+..++|+|++++|++++.|+.|++||
T Consensus 170 d~~i~~wd~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 220 (312)
T 4ery_A 170 DGLCRIWDTASGQCLK-----------------------------TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 220 (312)
T ss_dssp TSCEEEEETTTCCEEE-----------------------------EECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred CCcEEEEECCCCceee-----------------------------EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 9999999997765432 22344667899999999999999999999999999
Q ss_pred cCCCceec-cCCCCCC---eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 382 LDTGKKKF-LPRIGSP---LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 382 ~~~~~~~~-~~~~~~~---v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.+++... +..+... +......+++.++++++.|+.|++||+.+++.+..+.+|. ..|.+++|+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~----------~~v~~~~~~p~ 290 (312)
T 4ery_A 221 YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT----------DVVISTACHPT 290 (312)
T ss_dssp TTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS----------SCEEEEEECSS
T ss_pred CCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC----------CcEEEEeecCc
Confidence 99988653 3344332 2333345688999999999999999999999999999887 78999999999
Q ss_pred CCEEEEee--cCceEEEEEcC
Q 040987 458 GGLVALRA--ENYCIHFYSLL 476 (762)
Q Consensus 458 ~~~l~~~~--~dg~i~i~d~~ 476 (762)
++++++++ .|+.|++|+..
T Consensus 291 ~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 291 ENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SSEEEEEECTTTCCEEEEECC
T ss_pred CCceEEEEccCCccEEEecCC
Confidence 99999987 69999999863
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-38 Score=316.06 Aligned_cols=291 Identities=16% Similarity=0.272 Sum_probs=253.1
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
.....+.+|...|.+++|+|++++|++++.|+.|++|+..+++.. .+..|...|.+++|+|++++|++++.|+.|++||
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd 93 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWD 93 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEE
Confidence 455778899999999999999999999999999999999988774 4667888999999999999999999999999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+.+++.+..+.+|. ..|.+++|+|++++|++++.|+.|++||+.+++.+..+.. | ...+.
T Consensus 94 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~------~~~v~ 153 (312)
T 4ery_A 94 VSSGKCLKTLKGHS----------NYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA----H------SDPVS 153 (312)
T ss_dssp TTTCCEEEEEECCS----------SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC----C------SSCEE
T ss_pred CCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC----C------CCcEE
Confidence 99999999998887 7899999999999999999999999999998876655432 2 56799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+++|+|++++|++++ .|+.|++||+.+++....+. ..+ ...+..++|+|++++|++++.|+.|++|
T Consensus 154 ~~~~~~~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 154 AVHFNRDGSLIVSSS---------YDGLCRIWDTASGQCLKTLI----DDD-NPPVSFVKFSPNGKYILAATLDNTLKLW 219 (312)
T ss_dssp EEEECTTSSEEEEEE---------TTSCEEEEETTTCCEEEEEC----CSS-CCCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred EEEEcCCCCEEEEEe---------CCCcEEEEECCCCceeeEEe----ccC-CCceEEEEECCCCCEEEEEcCCCeEEEE
Confidence 999999999999999 88999999999887655442 345 6789999999999999999999999999
Q ss_pred EcccccccccccCCceeeeeecccCCCC---eEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKA---MTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
|+.+++....+. .|... +......+++++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+
T Consensus 220 d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~ 288 (312)
T 4ery_A 220 DYSKGKCLKTYT-----------GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH 288 (312)
T ss_dssp ETTTTEEEEEEC-----------SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred ECCCCcEEEEEE-----------ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec
Confidence 999877655442 23322 22333346889999998 9999999999999999999999999999999
Q ss_pred CCCCEEEEEE--cCCCCeEEEEECC
Q 040987 659 GSSEYLVATS--WGSKPQLSVWNMS 681 (762)
Q Consensus 659 ~dg~~l~s~~--~d~~~~v~vwd~~ 681 (762)
|++++|++++ .|+. |++|+.+
T Consensus 289 p~~~~l~s~~~~~d~~--i~~W~~d 311 (312)
T 4ery_A 289 PTENIIASAALENDKT--IKLWKSD 311 (312)
T ss_dssp SSSSEEEEEECTTTCC--EEEEECC
T ss_pred CcCCceEEEEccCCcc--EEEecCC
Confidence 9999999998 5777 9999865
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=348.17 Aligned_cols=336 Identities=11% Similarity=0.120 Sum_probs=271.4
Q ss_pred CcCeEEEEEcCCCc-EEEEe----------ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee
Q 040987 281 TKKLTVLAFHPTQR-IVAAG----------DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW 349 (762)
Q Consensus 281 ~~~v~~~~~sp~~~-~l~~~----------~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (762)
...|.+++|+|+++ +|+++ +.|+.|++|++.++.... ++..
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~---------------------------~~~~- 63 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEK---------------------------PIAS- 63 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCS---------------------------CSCC-
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCc---------------------------EEEE-
Confidence 34688999999987 99999 889999999997653211 1122
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCC----C-ceeccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT----G-KKKFLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKM 423 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~----~-~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~ 423 (762)
..|...|.+++|+|++++|++++.|+.|++||+.+ . ....+..|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 64 ~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred EecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 24888999999999999999999999999999988 2 33456778899999999998 899999999999999999
Q ss_pred CCce------EEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 424 PSME------IIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 424 ~~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+++ ....+. ....|...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+... .....
T Consensus 144 ~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~ 212 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPG-------QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT----SPNSG 212 (416)
T ss_dssp TTTSSCTTTCCCBCCC-------CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC----CCSSC
T ss_pred CCCccccccccccccc-------cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc----ccccc
Confidence 9875 222221 11123478999999999 789999999999999999988766554332 11122
Q ss_pred cceeEEEEEEecCC-CeEEEEeeeccccCCCcee---EEEEEEecCCC-ceeEEEEEeec-CCCCCceEEEEEcC-CCCe
Q 040987 497 VTVVVTLVALSQDG-SLMSTVDIKLAEEGIGSLV---CLKFWVSGTQN-KEFTLSTIVYE-PHRDAGISAVAFHP-NRRA 569 (762)
Q Consensus 497 ~~~~v~~~~~sp~g-~~l~~~~~~~~~~~~~~d~---~i~iwd~~~~~-~~~~~~~~~~~-~h~~~~v~~~~~sp-d~~~ 569 (762)
|...+.+++|+|++ .++++++ .++ .|++||+++.. ....+ . +| ...|.+++|+| ++++
T Consensus 213 ~~~~v~~~~~~~~~~~~l~~~~---------~d~~~~~i~~~d~~~~~~~~~~~-----~~~~-~~~v~~~~~s~~~~~~ 277 (416)
T 2pm9_A 213 IKQQLSVVEWHPKNSTRVATAT---------GSDNDPSILIWDLRNANTPLQTL-----NQGH-QKGILSLDWCHQDEHL 277 (416)
T ss_dssp CCCCEEEEEECSSCTTEEEEEE---------CCSSSCCCCEEETTSTTSCSBCC-----CSCC-SSCEEEEEECSSCSSC
T ss_pred cCCceEEEEECCCCCCEEEEEE---------CCCCCceEEEEeCCCCCCCcEEe-----ecCc-cCceeEEEeCCCCCCe
Confidence 25679999999997 5788887 677 99999999864 33322 4 68 88999999999 9999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC-cEEEEEc-CCeEEEEeCCCCeEEEEec-
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG-SVLAVAA-ETVITLWDPDRNVLVAVIG- 646 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg-~~la~~~-d~~i~iwd~~~~~~~~~l~- 646 (762)
|++++.|+.|++||+.+++....+ ..|...|++++|+|++ ++|++++ |+.|++||+.+++......
T Consensus 278 l~s~~~dg~v~~wd~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~ 346 (416)
T 2pm9_A 278 LLSSGRDNTVLLWNPESAEQLSQF-----------PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQE 346 (416)
T ss_dssp EEEEESSSEEEEECSSSCCEEEEE-----------ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC--
T ss_pred EEEEeCCCCEEEeeCCCCccceee-----------cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCccccc
Confidence 999999999999999987665544 3678899999999999 8999998 9999999998765332221
Q ss_pred ----------------------------------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ----------------------------------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ----------------------------------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.|..++.+++|+|||++|++++.|+. |++|++.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~--v~~w~~~~~ 415 (416)
T 2pm9_A 347 TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKG--VSITNPKIS 415 (416)
T ss_dssp --------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSC--BCCBCCCCC
T ss_pred ccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCe--EEEEEeccC
Confidence 15677889999999999999999998 999999875
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=326.58 Aligned_cols=313 Identities=17% Similarity=0.219 Sum_probs=251.1
Q ss_pred cEEEEecCCccccc---eeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeecc-----------
Q 040987 215 RICKCNLTESRLAG---GVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHH----------- 280 (762)
Q Consensus 215 ~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~----------- 280 (762)
...+|+....+... .....|...|.+++|+|||++||++.++.+++|++.+++.. ..+..|
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~-----~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 41 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLV-----ARLSDDSAANKDPENLN 115 (393)
T ss_dssp CEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEE-----EEECC------------
T ss_pred eEEEECCCCCcccCceeEEecCCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEE-----EEecCcccccccccccc
Confidence 34467665544331 12346999999999999999999998999999999988753 222222
Q ss_pred -------CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 281 -------TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 281 -------~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...|.+++|+|++++|++|+.|+.|++||+.+++ .+..+.+|.
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~------------------------------~~~~~~~h~ 165 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK------------------------------IVMILQGHE 165 (393)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCS
T ss_pred ccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc------------------------------EEEEEccCC
Confidence 2349999999999999999999999999997663 346788999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
..|.+++|+|++++|++++.|++|++||+++++......+...+.+++++| +++++++++.|+.|++||+.+++.+..+
T Consensus 166 ~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~ 245 (393)
T 1erj_A 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 245 (393)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred CCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence 999999999999999999999999999999998876666778899999999 8999999999999999999999888776
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE--------EeecccccCCCCcceeEEEE
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV--------QVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~v~~~ 504 (762)
..... ....|...|.+++|+|++++|++++.|+.|++||+.+....... .....+ |...|.++
T Consensus 246 ~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~ 316 (393)
T 1erj_A 246 DSENE---SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG------HKDFVLSV 316 (393)
T ss_dssp C---------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEEC------CSSCEEEE
T ss_pred ccccc---CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEec------ccCcEEEE
Confidence 32110 01123478999999999999999999999999999765432111 111122 26779999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC------CCCeEEEEeCCCc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP------NRRAAVSSSYGGD 578 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp------d~~~l~~~~~dg~ 578 (762)
+|+|++++|++++ .|+.|++||..+++....+ .+| ...|.+++|++ ++++|++++.||+
T Consensus 317 ~~~~~~~~l~sgs---------~D~~v~iwd~~~~~~~~~l-----~~h-~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~ 381 (393)
T 1erj_A 317 ATTQNDEYILSGS---------KDRGVLFWDKKSGNPLLML-----QGH-RNSVISVAVANGSSLGPEYNVFATGSGDCK 381 (393)
T ss_dssp EECGGGCEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECC-SSCEEEEEECSSCTTCTTCEEEEEEETTSE
T ss_pred EECCCCCEEEEEe---------CCCeEEEEECCCCeEEEEE-----CCC-CCCEEEEEecCCcCcCCCCCEEEEECCCCc
Confidence 9999999999999 8999999999998776554 578 88999999986 6889999999999
Q ss_pred EEEEEccc
Q 040987 579 FKVWICND 586 (762)
Q Consensus 579 i~iwd~~~ 586 (762)
|++|++..
T Consensus 382 i~iW~~~~ 389 (393)
T 1erj_A 382 ARIWKYKK 389 (393)
T ss_dssp EEEEEEEE
T ss_pred EEECcccc
Confidence 99999864
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=343.90 Aligned_cols=346 Identities=12% Similarity=0.175 Sum_probs=277.0
Q ss_pred CCceEEEECCCCC-EEEEE-----------eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC
Q 040987 236 KEPQVITISSSGK-YFGIR-----------KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303 (762)
Q Consensus 236 ~~v~~~~~spdg~-~la~~-----------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 303 (762)
..+.+++|+|+|+ +|+++ .|+.|++||+.+++.. .. .....|...|.+++|+|++++|++++.||
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~--~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 89 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--KP-IASLQVDSKFNDLDWSHNNKIIAGALDNG 89 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC--SC-SCCCCCSSCEEEEEECSSSSCEEEEESSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC--cE-EEEEecCCceEEEEECCCCCeEEEEccCC
Confidence 4577889999997 77765 6889999999987632 11 22336889999999999999999999999
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~ 382 (762)
.|++|++..... .......+.+|...|.+++|+|+ +++|++++.|+.|++||+
T Consensus 90 ~v~vw~~~~~~~--------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~ 143 (416)
T 2pm9_A 90 SLELYSTNEANN--------------------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM 143 (416)
T ss_dssp CEEEECCSSTTS--------------------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBT
T ss_pred eEEEeecccccc--------------------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEEC
Confidence 999999865210 01245677889999999999998 899999999999999999
Q ss_pred CCCc------eec----cCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 383 DTGK------KKF----LPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 383 ~~~~------~~~----~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.+++ ... ...+...+.+++|+|+ +.++++++.|+.|++||+.+++.+..+..+... ..+...+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----~~~~~~v~~ 219 (416)
T 2pm9_A 144 NKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN----SGIKQQLSV 219 (416)
T ss_dssp TTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCS----SCCCCCEEE
T ss_pred CCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccc----cccCCceEE
Confidence 9886 322 3467789999999999 789999999999999999999998888765311 111378999
Q ss_pred EEEeCCC-CEEEEeecCc---eEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCC
Q 040987 452 IAFNHDG-GLVALRAENY---CIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 452 ~~~s~~~-~~l~~~~~dg---~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~ 525 (762)
++|+|++ .++++++.|+ .|++||+.++. ....+. .. |...+.+++|+| ++++|++++
T Consensus 220 ~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~---~~------~~~~v~~~~~s~~~~~~l~s~~-------- 282 (416)
T 2pm9_A 220 VEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN---QG------HQKGILSLDWCHQDEHLLLSSG-------- 282 (416)
T ss_dssp EEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC---SC------CSSCEEEEEECSSCSSCEEEEE--------
T ss_pred EEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee---cC------ccCceeEEEeCCCCCCeEEEEe--------
Confidence 9999997 6899999998 99999998863 332221 01 267899999999 999999999
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC-CeEEEEeCCCcEEEEEcccccccccccC---------
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR-RAAVSSSYGGDFKVWICNDELQQKDLQS--------- 595 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------- 595 (762)
.|+.|++||+.+++....+ .+| ...|.+++|+|++ .+|++++.|+.|++||+.+.........
T Consensus 283 -~dg~v~~wd~~~~~~~~~~-----~~~-~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 283 -RDNTVLLWNPESAEQLSQF-----PAR-GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp -SSSEEEEECSSSCCEEEEE-----ECS-SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred -CCCCEEEeeCCCCccceee-----cCC-CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 8899999999998776655 467 8899999999999 8999999999999999988765433210
Q ss_pred ----------------CceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC
Q 040987 596 ----------------SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN 639 (762)
Q Consensus 596 ----------------~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~ 639 (762)
..+.. .....+...+.+++|+|||++|++++ |+.|+||++.+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHL-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp -----------CCSCCCSSCC-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred ccccccccccccccccccccc-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00000 11222567888999999999999998 999999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-38 Score=331.49 Aligned_cols=349 Identities=13% Similarity=0.092 Sum_probs=279.5
Q ss_pred ccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 75 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
+++ ++|+|+|++|++++ |+.|++||+.+++....+..| ..+....|+|++ .+|++++.|+.|++||+.++
T Consensus 59 ~~~-~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~l~~~~~dg~i~iwd~~~~ 129 (420)
T 3vl1_A 59 GKG-NTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQM-------RRFILGTTEGDIKVLDSNFN 129 (420)
T ss_dssp CTT-CEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSS-------CEEEEEETTSCEEEECTTSC
T ss_pred ccc-eeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCC-------CEEEEEECCCCEEEEeCCCc
Confidence 445 99999999999999 899999999999888888877 445666789999 68899999999999999877
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+.... ...
T Consensus 130 ~~~~~------------------------------------------------------------------------~~~ 137 (420)
T 3vl1_A 130 LQREI------------------------------------------------------------------------DQA 137 (420)
T ss_dssp EEEEE------------------------------------------------------------------------TTS
T ss_pred ceeee------------------------------------------------------------------------ccc
Confidence 65432 234
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
|...|.+++|+|++++|+++ .|+.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 212 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP-----RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCC-----EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCc-----eEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence 67889999999999999855 7899999999988765 56678999999999999999999999999999999987
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~ 392 (762)
++.... ......|...+.+++|.+++... ....
T Consensus 213 ~~~~~~---------------------------~~~~~~~~~~v~~~~~~~~~~~~--------------------~~~~ 245 (420)
T 3vl1_A 213 GTTIHT---------------------------FNRKENPHDGVNSIALFVGTDRQ--------------------LHEI 245 (420)
T ss_dssp TEEEEE---------------------------ECBTTBTTCCEEEEEEEECCCSS--------------------CGGG
T ss_pred CceeEE---------------------------eecCCCCCCCccEEEEecCCcce--------------------eeec
Confidence 754321 11122467788888887764322 1223
Q ss_pred CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc-CCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceE
Q 040987 393 IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG-IKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCI 470 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i 470 (762)
+...+.+++|+|++++|++++.|+.|++||+.+++....+.. |. ..+.+++|+|+++ +|++++.||.|
T Consensus 246 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~l~~g~~dg~i 315 (420)
T 3vl1_A 246 STSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFT----------CSCNSLTVDGNNANYIYAGYENGML 315 (420)
T ss_dssp CCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTS----------SCEEEEEECSSCTTEEEEEETTSEE
T ss_pred ccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccC----------CCceeEEEeCCCCCEEEEEeCCCeE
Confidence 446678899999999999999999999999999887777654 33 7899999999999 99999999999
Q ss_pred EEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE---
Q 040987 471 HFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS--- 546 (762)
Q Consensus 471 ~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~--- 546 (762)
++||+.+++. +..+... + ...+.++.+ +++++|++++ .|+.|++|++........+.
T Consensus 316 ~vwd~~~~~~~~~~~~~~---~------~~~v~~~~~-~~~~~l~s~~---------~d~~v~iw~~~~~~~~~~~~~~~ 376 (420)
T 3vl1_A 316 AQWDLRSPECPVGEFLIN---E------GTPINNVYF-AAGALFVSSG---------FDTSIKLDIISDPESERPAIEFE 376 (420)
T ss_dssp EEEETTCTTSCSEEEEES---T------TSCEEEEEE-ETTEEEEEET---------TTEEEEEEEECCTTCCSCEECTT
T ss_pred EEEEcCCCcCchhhhhcc---C------CCCceEEEe-CCCCEEEEec---------CCccEEEEeccCCCCCccceecc
Confidence 9999998754 4444321 1 456888854 5788999998 89999999998753322111
Q ss_pred -EEeecCCCCCceEEEEEcCCCC---eEEEEeCCCcEEEEEccc
Q 040987 547 -TIVYEPHRDAGISAVAFHPNRR---AAVSSSYGGDFKVWICND 586 (762)
Q Consensus 547 -~~~~~~h~~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~ 586 (762)
.....+| ...|.+++|+|+++ .+++++.+|.+.+|++.+
T Consensus 377 ~~~~~~~~-~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 377 TPTFLVSN-DDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp SCEEECCS-SCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CccEEccC-CcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 1123567 88999999999999 777788899999999864
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=337.77 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=281.1
Q ss_pred CceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 237 EPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 237 ~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.+.+++|+|+|++|++ +.|+.+++||+.+++.. .....| ..+....|+|++++|++|+.||.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS-----KMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETT-----TTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEeccccee-----eEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcce
Confidence 3457899999999985 47999999999988764 333344 4455557899999999999999999999876532
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIG 394 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~ 394 (762)
...+.+|...|.+++|+|++++|++++.|+.|++||+.+++.. .+..|.
T Consensus 132 ------------------------------~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~ 181 (420)
T 3vl1_A 132 ------------------------------REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHR 181 (420)
T ss_dssp ------------------------------EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCS
T ss_pred ------------------------------eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCC
Confidence 3566789999999999999999999999999999999988764 456788
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
..|.+++|+|++++|++++.|+.|++||+.+++.+..+..+.... ..+.++++.|++...+ +
T Consensus 182 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~----------~- 243 (420)
T 3vl1_A 182 ATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPH-------DGVNSIALFVGTDRQL----------H- 243 (420)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTT-------CCEEEEEEEECCCSSC----------G-
T ss_pred CcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCC-------CCccEEEEecCCccee----------e-
Confidence 999999999999999999999999999999999999988765332 6788888877643320 0
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
..+ ...+.+++|+|++++|++++ .|+.|++||+.+++....+. .+|
T Consensus 244 --------------~~~------~~~v~~~~~s~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~----~~~- 289 (420)
T 3vl1_A 244 --------------EIS------TSKKNNLEFGTYGKYVIAGH---------VSGVITVHNVFSKEQTIQLP----SKF- 289 (420)
T ss_dssp --------------GGC------CCCCCTTCSSCTTEEEEEEE---------TTSCEEEEETTTCCEEEEEC----CTT-
T ss_pred --------------ecc------cCcccceEEcCCCCEEEEEc---------CCCeEEEEECCCCceeEEcc----ccc-
Confidence 000 44577889999999999999 88999999999887665552 467
Q ss_pred CCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 555 DAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 555 ~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
...|.+++|+|+++ +|++++.||.|++||+.++.. ...+ ...|...|+++.+ +++++|++++ |+.|
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~----------~~~~~~~v~~~~~-~~~~~l~s~~~d~~v 358 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF----------LINEGTPINNVYF-AAGALFVSSGFDTSI 358 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE----------EESTTSCEEEEEE-ETTEEEEEETTTEEE
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhh----------hccCCCCceEEEe-CCCCEEEEecCCccE
Confidence 88999999999999 999999999999999988754 2222 1235677888855 5788999998 9999
Q ss_pred EEEeCCCC---------eEEEEeccccCceeEEEEeCCCC---EEEEEEcCCCCeEEEEECCC
Q 040987 632 TLWDPDRN---------VLVAVIGETLTPIMNMSFVGSSE---YLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 632 ~iwd~~~~---------~~~~~l~~~~~~v~~~~~s~dg~---~l~s~~~d~~~~v~vwd~~~ 682 (762)
++|++... .....+.+|...|.+++|+||++ .|++++.+|. +.+|++++
T Consensus 359 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~--~~~~~~~~ 419 (420)
T 3vl1_A 359 KLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNF--CALYNLSN 419 (420)
T ss_dssp EEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTE--EEEEESCC
T ss_pred EEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCce--EEEEeccC
Confidence 99998863 12224557888999999999999 7888888887 99999875
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=315.55 Aligned_cols=297 Identities=18% Similarity=0.244 Sum_probs=229.2
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeee-cC-CccceeEEEEeCCCCcccceeeeEEee
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSL-EG-HKAPVTTVIVVPASTPATKILSYCWTA 139 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l-~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~ 139 (762)
...+.+|.+.|.+ ++|+|+ +||+++ |++|+|||++++ +.+..+ .+ |...|.+++|+|++ .+|+++
T Consensus 7 ~~~~~~h~~~v~~-~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-------~~las~ 76 (330)
T 2hes_X 7 IKSLKLYKEKIWS-FDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHT-------SLLAAG 76 (330)
T ss_dssp EEEEECCSSCEEE-EEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTS-------SEEEEE
T ss_pred ceeeccCCCceee-eccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCC-------CEEEEE
Confidence 3467899999997 999998 999998 799999999875 456666 45 99999999999999 689999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|+|||+..+.... .
T Consensus 77 s~D~~v~iw~~~~~~~~~-~------------------------------------------------------------ 95 (330)
T 2hes_X 77 SFDSTVSIWAKEESADRT-F------------------------------------------------------------ 95 (330)
T ss_dssp ETTSCEEEEEC--------C------------------------------------------------------------
T ss_pred eCCCcEEEEEcccCcCcc-c------------------------------------------------------------
Confidence 999999999986432100 0
Q ss_pred ecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCc-hhhhheeeeeeeccCcCeEEEEEcCCCcEEE
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDV-EAERVVMRKITLHHTKKLTVLAFHPTQRIVA 297 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 297 (762)
..+.. ..+.+|...|.+++|+|+|++||++ .|+.|++||+... ... .....+.+|...|.+++|+|++++|+
T Consensus 96 ---~~~~~-~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~l~ 169 (330)
T 2hes_X 96 ---EMDLL-AIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEY--ECISVLQEHSQDVKHVIWHPSEALLA 169 (330)
T ss_dssp ---CCEEE-EEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCC--EEEEEECCCSSCEEEEEECSSSSEEE
T ss_pred ---cceeE-EEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCe--EEEEEeccCCCceEEEEECCCCCEEE
Confidence 00000 2445688899999999999999955 6999999999533 211 22356678999999999999999999
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC--CCEEEEEecCC
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD--GAYLYSGGKEG 375 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s~~~dg 375 (762)
+++.|+.|++||...+. .+++..+.+|...|.+++|+|+ +.+|++++.|+
T Consensus 170 s~s~D~~i~iW~~~~~~----------------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~ 221 (330)
T 2hes_X 170 SSSYDDTVRIWKDYDDD----------------------------WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS 221 (330)
T ss_dssp EEETTSCEEEEEEETTE----------------------------EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS
T ss_pred EEcCCCeEEEEECCCCC----------------------------eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC
Confidence 99999999999975442 1245678899999999999998 77899999999
Q ss_pred eEEEEecCCCc--------ee-ccCC-CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEE-EccCCCCCCCC
Q 040987 376 VLVVWQLDTGK--------KK-FLPR-IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRS-ISGIKLPCPLP 442 (762)
Q Consensus 376 ~i~~wd~~~~~--------~~-~~~~-~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~ 442 (762)
+|++||+.++. .. .+.. |...|.+++|++++ +|++++.|+.|++|+..+++ .... ..+|.
T Consensus 222 ~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~------ 294 (330)
T 2hes_X 222 TVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHG------ 294 (330)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTT------
T ss_pred eEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccc------
Confidence 99999987642 21 2333 78899999999765 88999999999999998764 2322 23443
Q ss_pred CcccC-ceeeEEEeC--CCCEEEEeecCceEEEEEcCC
Q 040987 443 EEYKG-LCRDIAFNH--DGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 443 ~~~~~-~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~ 477 (762)
. .|.+++|+| ++++|++++.||.|++||+..
T Consensus 295 ----~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 295 ----VYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ----TSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred ----cceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 4 789999999 789999999999999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=343.81 Aligned_cols=355 Identities=11% Similarity=0.001 Sum_probs=249.3
Q ss_pred eeccCCCceEEEECCCC---------CEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 231 TLAEMKEPQVITISSSG---------KYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg---------~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
...+.+.|.+++|+|++ ++||++..... . -..+|+++.+++++.
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~--------~-------------------~~~~~~~~~laS~s~ 181 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM--------D-------------------EPLNEHLEMFDKEKH 181 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEeccc--------C-------------------CccchhhhhhccCCC
Confidence 34457889999999987 78887642210 0 013689999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC------CCEEEEEecCC
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD------GAYLYSGGKEG 375 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~------g~~l~s~~~dg 375 (762)
|++|+||++.+++... .....+.+|.+.|..++|+|+ +.+|++++.||
T Consensus 182 D~tI~iWd~~~~~~~~--------------------------~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHC--------------------------VKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG 235 (524)
T ss_dssp CEEEEEEEEETTTCCE--------------------------EEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS
T ss_pred CceEEEEEccCCCCCc--------------------------eEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC
Confidence 9999999986653210 012345678889999999996 57999999999
Q ss_pred eEEEEecCCCcee------------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc-eEEEEEccCCCCCCCC
Q 040987 376 VLVVWQLDTGKKK------------FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM-EIIRSISGIKLPCPLP 442 (762)
Q Consensus 376 ~i~~wd~~~~~~~------------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~ 442 (762)
+|++||+.++... .+..|...|.+++|++++ .|++|+.||+|++||++++ .+...+.+|.
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~------ 308 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHD------ 308 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSS------
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeeccc------
Confidence 9999999876421 345677899999999864 8999999999999999876 3445577776
Q ss_pred CcccCceeeE--EEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 443 EEYKGLCRDI--AFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 443 ~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
..|.++ +|+|++ ++|++++.|++|++||+++++....+..... ...+.+++|+|+++.+++++
T Consensus 309 ----~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~--------~~~v~~v~fsp~~~~l~s~~-- 374 (524)
T 2j04_B 309 ----SYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR--------GSNLVPVVYCPQIYSYIYSD-- 374 (524)
T ss_dssp ----SCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS--------CCSCCCEEEETTTTEEEEEC--
T ss_pred ----ccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc--------cCcccceEeCCCcCeEEEeC--
Confidence 788998 578887 8999999999999999988776555443211 12378899999999999998
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.|++|++||++++.....+ .+| .+.|++++|+|+|++|++|+.|++|++||+... ......
T Consensus 375 -------~d~tv~lwd~~~~~~~~~l-----~gH-~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~----- 435 (524)
T 2j04_B 375 -------GASSLRAVPSRAAFAVHPL-----VSR-ETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIK----- 435 (524)
T ss_dssp -------SSSEEEEEETTCTTCCEEE-----EEC-SSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------
T ss_pred -------CCCcEEEEECcccccceee-----ecC-CCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccc-----
Confidence 8889999999988776554 468 899999999999999999999999999998654 211110
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC-CCeEEEEeccccCceeEEEEeCCC---CEEEEEEcCCCCeE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD-RNVLVAVIGETLTPIMNMSFVGSS---EYLVATSWGSKPQL 675 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~-~~~~~~~l~~~~~~v~~~~~s~dg---~~l~s~~~d~~~~v 675 (762)
.. ....+...+.+++|+|+|+.+.. . ..+.+|+.. ++.++..+.+|..+|.+++|+|++ .+||+++.||. |
T Consensus 436 ~~-~~~~~~~~v~~v~~sp~g~~~~~-~-~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~--v 510 (524)
T 2j04_B 436 NS-SATQKSLRLWKWDYSIKDDKYRI-D-SSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGL--L 510 (524)
T ss_dssp ------CCCCEEEECBCCSSSCEEEE-C-CCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSE--E
T ss_pred cC-ccceeeeEEEEeccCCCCCeEEc-c-CCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCce--E
Confidence 00 00011235779999999986532 2 233345443 577888899999999999999995 49999999998 9
Q ss_pred EEEECCCC
Q 040987 676 SVWNMSKL 683 (762)
Q Consensus 676 ~vwd~~~~ 683 (762)
+||++...
T Consensus 511 rlw~l~~~ 518 (524)
T 2j04_B 511 TLEYLSLE 518 (524)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 99998743
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=314.42 Aligned_cols=292 Identities=16% Similarity=0.237 Sum_probs=248.8
Q ss_pred cceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 345 LCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+..+|++|.+.|++++|+|+ +++|++++.|++|++||+.+.+. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~ 109 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGT 109 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEccccc
Confidence 34678999999999999997 68999999999999999987653 245678899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++|+............+. ..+....++++++++++++.|+.+++||....... ......|
T Consensus 110 i~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~---~~~~~~~------ 170 (340)
T 4aow_A 110 LRLWDLTTGTTTRRFVGHT----------KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY---TVQDESH------ 170 (340)
T ss_dssp EEEEETTTTEEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE---EECSSSC------
T ss_pred ceEEeecccceeeeecCCC----------CceeEEEEeecCccceeecCCCeEEEEEeCCCceE---EEEeccc------
Confidence 9999999988888777665 67788999999999999999999999998765322 1222222
Q ss_pred ceeEEEEEEecCC--CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 498 TVVVTLVALSQDG--SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 498 ~~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
...+..++|++++ .++++++ .|+.|++||+.+++....+ .+| ...|++++|+|++++|++++.
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~---------~d~~i~i~d~~~~~~~~~~-----~~h-~~~v~~~~~s~~~~~l~s~s~ 235 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCG---------WDKLVKVWNLANCKLKTNH-----IGH-TGYLNTVTVSPDGSLCASGGK 235 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCEEEEEECTTSSEEEEEET
T ss_pred cCcccceEEccCCCCcEEEEEc---------CCCEEEEEECCCCceeeEe-----cCC-CCcEEEEEECCCCCEEEEEeC
Confidence 6779999998875 4677777 8899999999988765554 678 899999999999999999999
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec---------
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--------- 646 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--------- 646 (762)
|+.|++||+.+.+....+. +...+.+++|+|++.+++++.|+.|++||++++..+..+.
T Consensus 236 Dg~i~iwd~~~~~~~~~~~------------~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 303 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLD------------GGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSK 303 (340)
T ss_dssp TCEEEEEETTTTEEEEEEE------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------
T ss_pred CCeEEEEEeccCceeeeec------------CCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeecc
Confidence 9999999999887665542 4578999999999988877779999999999987776653
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+|...|++++|+|||++|++++.||. |++||+++|+
T Consensus 304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~--v~iW~~~tGt 339 (340)
T 4aow_A 304 AEPPQCTSLAWSADGQTLFAGYTDNL--VRVWQVTIGT 339 (340)
T ss_dssp CCCCCEEEEEECTTSSEEEEEETTSC--EEEEEEEC--
T ss_pred CCCCCEEEEEECCCCCEEEEEeCCCE--EEEEeCCCcC
Confidence 57888999999999999999999998 9999999986
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-37 Score=316.61 Aligned_cols=298 Identities=17% Similarity=0.238 Sum_probs=260.2
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
.+...+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+.+++.+.++.+|...|.+++|+|++ .+|++++.
T Consensus 23 ~~~~~l~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-------~~l~s~~~ 94 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQ-VKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFT-------KYCVTGSA 94 (369)
T ss_dssp EEEEEEECCSSCEEE-EEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-------SEEEEEET
T ss_pred cccEEEEEeeceEEE-EEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCC-------CEEEEEeC
Confidence 455678999999998 99999999999999 7999999999999999999999999999999999 68899999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|++|++||+.+++++..+.
T Consensus 95 dg~i~iwd~~~~~~~~~~~------------------------------------------------------------- 113 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWK------------------------------------------------------------- 113 (369)
T ss_dssp TTEEEEEETTTCCEEEEEE-------------------------------------------------------------
T ss_pred CCeEEEEECCCCcEEEEee-------------------------------------------------------------
Confidence 9999999999988766543
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCchhhhh------eeeeeeeccCc--CeEEE
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVEAERV------VMRKITLHHTK--KLTVL 287 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~~~~~------~~~~~~~~~~~--~v~~~ 287 (762)
+...+.+++|+|++++++++ .+ +.|.+||+........ ........|.. .+.++
T Consensus 114 ------------~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (369)
T 3zwl_B 114 ------------SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVA 181 (369)
T ss_dssp ------------CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEE
T ss_pred ------------cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEE
Confidence 34567788999999999865 55 8999999987654210 01123334555 89999
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCE
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY 367 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 367 (762)
+|+|++++|++++.||.|++||+.+.. .....+..|...|.+++|+|++++
T Consensus 182 ~~~~~~~~l~~~~~dg~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~~~~~ 232 (369)
T 3zwl_B 182 GWSTKGKYIIAGHKDGKISKYDVSNNY-----------------------------EYVDSIDLHEKSISDMQFSPDLTY 232 (369)
T ss_dssp EECGGGCEEEEEETTSEEEEEETTTTT-----------------------------EEEEEEECCSSCEEEEEECTTSSE
T ss_pred EEcCCCCEEEEEcCCCEEEEEECCCCc-----------------------------EeEEEEecCCCceeEEEECCCCCE
Confidence 999999999999999999999997632 234677889999999999999999
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--------------cEEEEEcCCceEEEEEc
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--------------QVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--------------~i~i~d~~~~~~~~~~~ 433 (762)
|++++.|+.|++||+.+++......+...+..++|+|+++++++++.++ .+++||..+++.+..+.
T Consensus 233 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 233 FITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred EEEecCCceEEEEECCCCceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 9999999999999999998877666888999999999999999999888 89999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG 480 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~ 480 (762)
+|. ..|.+++|+|++++|++++.||.|++|++..+..
T Consensus 313 ~~~----------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 313 GHF----------GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp CCS----------SCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred ccc----------CcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 887 7899999999999999999999999999986543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=337.63 Aligned_cols=356 Identities=9% Similarity=-0.016 Sum_probs=248.3
Q ss_pred eecCcccccCCceeecCC---------CEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEE
Q 040987 68 IRGGRSYVSSPPAFSNDV---------KRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg---------~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~ 137 (762)
...+.+.|.+ |+|+|++ ++||++. ++.. -..+|++ .+++
T Consensus 129 ~~~~~~~V~s-v~w~p~~~~~~~~~~~~~LAv~~~~~~~-----------------------~~~~~~~-------~~la 177 (524)
T 2j04_B 129 IYNVGGLVTD-IAWLNIEENTDIGKDIQYLAVAVSQYMD-----------------------EPLNEHL-------EMFD 177 (524)
T ss_dssp EEECCC--CC-CSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------------
T ss_pred EEECCCceeE-EEecccCCCCccCcCCeEEEEEEecccC-----------------------Cccchhh-------hhhc
Confidence 3446788997 9999997 8999998 3310 0137888 6789
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
|++.|++|+|||+.++++.....
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~--------------------------------------------------------- 200 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKV--------------------------------------------------------- 200 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEE---------------------------------------------------------
T ss_pred cCCCCceEEEEEccCCCCCceEE---------------------------------------------------------
Confidence 99999999999987765422110
Q ss_pred EEecCCccccceeeeccCCCceEEEECCC------CCEEEE-EeCCeEEEEEccCchhhh------heeeeeeeccCcCe
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSS------GKYFGI-RKQRKLLIWKVPDVEAER------VVMRKITLHHTKKL 284 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spd------g~~la~-~~~~~i~iwd~~~~~~~~------~~~~~~~~~~~~~v 284 (762)
..+.+|.+.|.+++|+|+ +.+||+ +.|++|++||+..+.... ......+.+|...|
T Consensus 201 -----------~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v 269 (524)
T 2j04_B 201 -----------QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLI 269 (524)
T ss_dssp -----------EEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCE
T ss_pred -----------EEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCE
Confidence 123345678899999997 578884 579999999998764310 01123456899999
Q ss_pred EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE--EEe
Q 040987 285 TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL--IFS 362 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~s 362 (762)
.+++|++++ .|++|+.||+|++||+.++. .+...+.+|...|.++ +|+
T Consensus 270 ~sv~~s~~~-~lasgs~DgtV~lWD~~~~~-----------------------------~~~~~~~~H~~~V~sv~~~~s 319 (524)
T 2j04_B 270 TTFDFLSPT-TVVCGFKNGFVAEFDLTDPE-----------------------------VPSFYDQVHDSYILSVSTAYS 319 (524)
T ss_dssp EEEEESSSS-EEEEEETTSEEEEEETTBCS-----------------------------SCSEEEECSSSCEEEEEEECC
T ss_pred EEEEecCCC-eEEEEeCCCEEEEEECCCCC-----------------------------CceEEeecccccEEEEEEEcC
Confidence 999999865 79999999999999997542 1235678899999999 578
Q ss_pred cCC-CEEEEEecCCeEEEEecCCCceec-cCCCC--CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC
Q 040987 363 SDG-AYLYSGGKEGVLVVWQLDTGKKKF-LPRIG--SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 363 ~~g-~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~--~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
++| ++|++++.|++|++||+++++... +..+. ..+.+++|+|+++.+++++.|+.|++||++++.++..+.+|.
T Consensus 320 ~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~-- 397 (524)
T 2j04_B 320 DFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE-- 397 (524)
T ss_dssp TTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECS--
T ss_pred CCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCC--
Confidence 887 899999999999999998876532 22232 357889999999999999999999999999988888888887
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
+.|.+++|+|++++|++|+.|++|++||+... ........... .....+..++|+|+++.+...
T Consensus 398 --------~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~-----~~~~~v~~v~~sp~g~~~~~~-- 461 (524)
T 2j04_B 398 --------TTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSAT-----QKSLRLWKWDYSIKDDKYRID-- 461 (524)
T ss_dssp --------SCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC-----------CCCCEEEECBCCSSSCEEEEC--
T ss_pred --------CceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccc-----eeeeEEEEeccCCCCCeEEcc--
Confidence 78999999999999999999999999998653 22111000000 012357899999999855332
Q ss_pred eccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcCCCC---eEEEEeCCCcEEEEEccc
Q 040987 519 KLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHPNRR---AAVSSSYGGDFKVWICND 586 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~ 586 (762)
. ..++|+.. ++..... +.+| ...|.+++|+|++. .+|+|+.||.|+||++..
T Consensus 462 --------~--~~~~~~~~~~g~~~~~-----l~gh-~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 --------S--SYEVYPLTVNDVSKAK-----IDAH-GINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp --------C--CCCCCC------------------C-CCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred --------C--CceecccccCCcceee-----ecCC-CceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2 22333322 2333333 3678 88999999999964 899999999999999864
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-36 Score=307.26 Aligned_cols=299 Identities=13% Similarity=0.181 Sum_probs=250.3
Q ss_pred ceeeeccCCCceEEEECCC-CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 228 GGVTLAEMKEPQVITISSS-GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spd-g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
+..+.+|.+.|++++|+|+ +++|++ +.|++|+|||+.+.+.........+.+|...|.+++|+|++++|++++.|+.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i 110 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence 3567899999999999998 678885 57999999999887654334456678899999999999999999999999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
++|+...... ......+...+..+.+++++++|++++.|+.+++||....
T Consensus 111 ~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~ 160 (340)
T 4aow_A 111 RLWDLTTGTT------------------------------TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV 160 (340)
T ss_dssp EEEETTTTEE------------------------------EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred eEEeecccce------------------------------eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCC
Confidence 9999876543 2455567778889999999999999999999999999876
Q ss_pred cee--ccCCCCCCeEEEEeCCCC--CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE
Q 040987 386 KKK--FLPRIGSPLLYFTESPDP--SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461 (762)
Q Consensus 386 ~~~--~~~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 461 (762)
... ....+...+..++|++++ .++++++.|+.|++||+.+++....+.+|. +.|.+++|+|++++|
T Consensus 161 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~----------~~v~~~~~s~~~~~l 230 (340)
T 4aow_A 161 CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT----------GYLNTVTVSPDGSLC 230 (340)
T ss_dssp EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCS----------SCEEEEEECTTSSEE
T ss_pred ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCC----------CcEEEEEECCCCCEE
Confidence 653 456678899999998875 567888999999999999999999999887 789999999999999
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK 541 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~ 541 (762)
++++.|+.|++||+.+.+.+..+.. ...+.+++|+|++.+++.+ .|+.|++||+++...
T Consensus 231 ~s~s~Dg~i~iwd~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~----------~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 231 ASGGKDGQAMLWDLNEGKHLYTLDG-----------GDIINALCFSPNRYWLCAA----------TGPSIKIWDLEGKII 289 (340)
T ss_dssp EEEETTCEEEEEETTTTEEEEEEEC-----------SSCEEEEEECSSSSEEEEE----------ETTEEEEEETTTTEE
T ss_pred EEEeCCCeEEEEEeccCceeeeecC-----------CceEEeeecCCCCceeecc----------CCCEEEEEECCCCeE
Confidence 9999999999999998877665543 4569999999998766655 678999999998766
Q ss_pred eeEEEE----EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 542 EFTLST----IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 542 ~~~~~~----~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
...+.. ....+| ...|++++|+||+++|++|+.||.|+|||+.+|.
T Consensus 290 ~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 290 VDELKQEVISTSSKAE-PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEEECCC-------CC-CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred EEeccccceeeeccCC-CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 554432 123467 8899999999999999999999999999999875
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=313.00 Aligned_cols=304 Identities=11% Similarity=0.113 Sum_probs=260.5
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
....+.+|...|++++|+|++++|++++.|+.|++||+.+++.. .+..|...|.+++|+|++++|++++.|+.|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 34568999999999999999999999999999999999998875 45668899999999999999999999999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeecccc-cCCCCc
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERNH-QPGDDV 497 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~ 497 (762)
.+++.+..+. +. ..+.+++|+|+++++++++.+ +.|++||+........+....... .....+
T Consensus 104 ~~~~~~~~~~-~~----------~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 104 SNGQCVATWK-SP----------VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTCCEEEEEE-CS----------SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCCcEEEEee-cC----------CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 9999988887 33 688999999999999999998 999999998776544433221100 000001
Q ss_pred --ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 498 --TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 498 --~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...+.+++|+|++++|++++ .++.|++||+.+ ......+ ..| ...|.+++|+|++++|++++
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~-----~~~-~~~v~~~~~~~~~~~l~~~~ 237 (369)
T 3zwl_B 173 EGLDAATVAGWSTKGKYIIAGH---------KDGKISKYDVSNNYEYVDSI-----DLH-EKSISDMQFSPDLTYFITSS 237 (369)
T ss_dssp TTCCCEEEEEECGGGCEEEEEE---------TTSEEEEEETTTTTEEEEEE-----ECC-SSCEEEEEECTTSSEEEEEE
T ss_pred cCccceeEEEEcCCCCEEEEEc---------CCCEEEEEECCCCcEeEEEE-----ecC-CCceeEEEECCCCCEEEEec
Confidence 22799999999999999998 889999999998 4433333 567 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC--------------eEEEEeCCCC
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET--------------VITLWDPDRN 639 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~--------------~i~iwd~~~~ 639 (762)
.|+.|++||+.+++....+. +...+.+++|+|+++++++++ ++ .+++||..++
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYE------------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCceEEEEECCCCceeeeec------------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 99999999999887665552 578899999999999999987 66 8999999999
Q ss_pred eEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeE
Q 040987 640 VLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWS 688 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~ 688 (762)
+.+..+.+|...|.+++|+||+++|++++.||. |++|+++++.....
T Consensus 306 ~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~~~~~ 352 (369)
T 3zwl_B 306 EEIGRVQGHFGPLNTVAISPQGTSYASGGEDGF--IRLHHFEKSYFDFK 352 (369)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSEEEEEETTSE--EEEEEECHHHHTCC
T ss_pred cchhheecccCcEEEEEECCCCCEEEEEcCCCe--EEEEECccccchhH
Confidence 999999999999999999999999999999998 99999988765443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.40 Aligned_cols=298 Identities=17% Similarity=0.296 Sum_probs=246.1
Q ss_pred eeeecCcccccCCceeecCC-CEEEEEe-CCEEEEEEccc-----ceEEeeecCCccceeEEEEeCCCCcccceeeeEEe
Q 040987 66 KMIRGGRSYVSSPPAFSNDV-KRLLVCT-SNTVSIFSTST-----GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg-~~la~~~-~~~i~iwd~~~-----~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s 138 (762)
..+.+|.+.|.+ ++|+|++ ++|++|+ |++|+|||+.+ +...+.+.+|...|.+++|+|++ .+|+|
T Consensus 376 ~~l~~H~~~V~~-v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g-------~~l~s 447 (694)
T 3dm0_A 376 GTMRAHTDMVTA-IATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDG-------QFALS 447 (694)
T ss_dssp EEEECCSSCEEE-EECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTS-------SEEEE
T ss_pred hhcccCCceeEE-EEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCC-------CEEEE
Confidence 357899999998 9999875 7999999 79999999875 34667899999999999999999 68899
Q ss_pred eecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEE
Q 040987 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICK 218 (762)
Q Consensus 139 ~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~i 218 (762)
|+.|++|+|||+.++++++.+.
T Consensus 448 gs~Dg~v~vwd~~~~~~~~~~~---------------------------------------------------------- 469 (694)
T 3dm0_A 448 GSWDGELRLWDLAAGVSTRRFV---------------------------------------------------------- 469 (694)
T ss_dssp EETTSEEEEEETTTTEEEEEEE----------------------------------------------------------
T ss_pred EeCCCcEEEEECCCCcceeEEe----------------------------------------------------------
Confidence 9999999999999887665443
Q ss_pred EecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC--cE
Q 040987 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ--RI 295 (762)
Q Consensus 219 wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~--~~ 295 (762)
+|...|.+++|+|++++|++ +.|+.|++||....... .......+|...|.+++|+|++ ..
T Consensus 470 --------------~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 533 (694)
T 3dm0_A 470 --------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY--TISEGGEGHRDWVSCVRFSPNTLQPT 533 (694)
T ss_dssp --------------CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE--EECSSTTSCSSCEEEEEECSCSSSCE
T ss_pred --------------CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce--eeccCCCCCCCcEEEEEEeCCCCcce
Confidence 46677889999999999985 47999999998654322 1112224788999999999987 58
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG 375 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg 375 (762)
|++++.|+.|++||+.+.+ +...+.+|...|.+++|+|++++|++++.|+
T Consensus 534 l~s~s~d~~v~vwd~~~~~------------------------------~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg 583 (694)
T 3dm0_A 534 IVSASWDKTVKVWNLSNCK------------------------------LRSTLAGHTGYVSTVAVSPDGSLCASGGKDG 583 (694)
T ss_dssp EEEEETTSCEEEEETTTCC------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEeCCCeEEEEECCCCc------------------------------EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 9999999999999997653 3467889999999999999999999999999
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC---------CCccc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL---------PEEYK 446 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------~~~~~ 446 (762)
.|++||+.+++......+...+.+++|+|++.+++++ .++.|++||+.+++.+..+..+...... ...+.
T Consensus 584 ~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 662 (694)
T 3dm0_A 584 VVLLWDLAEGKKLYSLEANSVIHALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662 (694)
T ss_dssp BCEEEETTTTEEEECCBCSSCEEEEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CC
T ss_pred eEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCcee
Confidence 9999999999887766777889999999999888776 5667999999999988887654321100 00111
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
..+.+++|+|+|++|++++.||.|++|++.
T Consensus 663 ~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 663 IYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 246889999999999999999999999985
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=336.12 Aligned_cols=291 Identities=17% Similarity=0.238 Sum_probs=248.1
Q ss_pred ceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcE
Q 040987 346 CTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQV 418 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i 418 (762)
...+.+|.+.|++++|+|++ ++|++++.|++|++||+.+... ..+..|...|.+++|+|++++|++++.|+.|
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v 454 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcE
Confidence 34688999999999999864 7999999999999999976432 3467889999999999999999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||+.++.....+.+|. ..|.+++|+|++++|++++.|++|++||...... ..+.... ..|.
T Consensus 455 ~vwd~~~~~~~~~~~~h~----------~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~------~~h~ 517 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHT----------KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGG------EGHR 517 (694)
T ss_dssp EEEETTTTEEEEEEECCS----------SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSST------TSCS
T ss_pred EEEECCCCcceeEEeCCC----------CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCC------CCCC
Confidence 999999999999999887 7899999999999999999999999999864321 1111111 2237
Q ss_pred eeEEEEEEecCC--CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 499 VVVTLVALSQDG--SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 499 ~~v~~~~~sp~g--~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
..|.+++|+|++ ..+++++ .|+.|++||+.+.+....+ .+| ...|++++|+|++++|++++.|
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s---------~d~~v~vwd~~~~~~~~~~-----~~h-~~~v~~v~~spdg~~l~sg~~D 582 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSAS---------WDKTVKVWNLSNCKLRSTL-----AGH-TGYVSTVAVSPDGSLCASGGKD 582 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEEeCCCCcceEEEEe---------CCCeEEEEECCCCcEEEEE-----cCC-CCCEEEEEEeCCCCEEEEEeCC
Confidence 789999999987 5789998 8999999999988765544 678 8999999999999999999999
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc-------
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL------- 649 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~------- 649 (762)
|.|++||+.+++....+. +...|.+++|+|++.+|+++.++.|++||+.+++.+..+..+.
T Consensus 583 g~i~iwd~~~~~~~~~~~------------~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 650 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE------------ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKA 650 (694)
T ss_dssp SBCEEEETTTTEEEECCB------------CSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC------
T ss_pred CeEEEEECCCCceEEEec------------CCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccc
Confidence 999999999887765542 4567999999999999999888889999999998887765332
Q ss_pred ------------CceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 650 ------------TPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 650 ------------~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
..+.+++|+|||++|++++.||. |++||+..
T Consensus 651 ~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~--i~iW~i~~ 693 (694)
T 3dm0_A 651 DNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV--IRVWGIGR 693 (694)
T ss_dssp ----------CCCCEEEEEECTTSSEEEEEETTSE--EEEEEC--
T ss_pred cccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe--EEEEeccC
Confidence 12788999999999999999998 99999863
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=315.01 Aligned_cols=323 Identities=18% Similarity=0.233 Sum_probs=271.3
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|.+.|.. +++++|++||+++ ||.|+|||+.+++++.++.+|.+.|.+++|+ + .++++++.|
T Consensus 110 ~~~~l~~h~~~v~~--~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~-------~~l~s~~~d 178 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D-------NIIISGSTD 178 (445)
T ss_dssp CCEEEECSTTSCEE--EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T-------TEEEEEETT
T ss_pred eeEEecccCCCcEE--EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--C-------CEEEEEeCC
Confidence 34567999998753 3677899999999 7999999999999999999999999999998 4 578899999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++++..+..|. .+.++.+. +.. + ++|+.|+.|++||+
T Consensus 179 g~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------~~~---l-------------------~s~s~dg~i~~wd~ 226 (445)
T 2ovr_B 179 RTLKVWNAETGECIHTLYGHTSTVRCMHLH----------EKR---V-------------------VSGSRDATLRVWDI 226 (445)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEE----------TTE---E-------------------EEEETTSEEEEEES
T ss_pred CeEEEEECCcCcEEEEECCCCCcEEEEEec----------CCE---E-------------------EEEeCCCEEEEEEC
Confidence 999999999999999998887 77777541 110 1 66889999999999
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
.+++.+ ....+|...+.+++| ++++++ ++.|+.|++||+.+++.. ....+|...|.+++| +++++++++
T Consensus 227 ~~~~~~-~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~--~~~~l~~~~ 296 (445)
T 2ovr_B 227 ETGQCL-HVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCL-----HTLQGHTNRVYSLQF--DGIHVVSGS 296 (445)
T ss_dssp SSCCEE-EEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEE-----EEECCCSSCEEEEEE--CSSEEEEEE
T ss_pred CCCcEE-EEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEe-----EEecCCCCceEEEEE--CCCEEEEEe
Confidence 999888 566789999999999 677777 557999999999987754 566789999999999 888999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
.||.|++||+.+++ .+..+.+|...+.++.+ +++++++++.||.|++|
T Consensus 297 ~d~~i~i~d~~~~~------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vw 344 (445)
T 2ovr_B 297 LDTSIRVWDVETGN------------------------------CIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIW 344 (445)
T ss_dssp TTSCEEEEETTTCC------------------------------EEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred CCCeEEEEECCCCC------------------------------EEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEE
Confidence 99999999997764 34567788888888877 46799999999999999
Q ss_pred ecCCCceecc-C---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 381 QLDTGKKKFL-P---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 381 d~~~~~~~~~-~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
|+.+++.... . .+...|.+++|+ ++++++++.||.|++||+.+++.+..+..... ..+.+.|.+++|+|
T Consensus 345 d~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-----~~~~~~v~~~~~s~ 417 (445)
T 2ovr_B 345 DIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLES-----GGSGGVVWRIRASN 417 (445)
T ss_dssp ETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTT-----GGGTCEEEEEEECS
T ss_pred ECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeecccc-----CCCCceEEEEEecC
Confidence 9999887532 2 277889999995 68999999999999999999999888732110 01237899999999
Q ss_pred CCCEEEEeecCce----EEEEEcCCC
Q 040987 457 DGGLVALRAENYC----IHFYSLLDD 478 (762)
Q Consensus 457 ~~~~l~~~~~dg~----i~i~d~~~~ 478 (762)
++.++++++.||. +.+||+...
T Consensus 418 ~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 418 TKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999999997 999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=315.73 Aligned_cols=313 Identities=16% Similarity=0.243 Sum_probs=259.7
Q ss_pred eeeeccCcCe-EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKL-TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v-~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..+.+|...+ .++.+ ++++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~------------------------------~~~~~~~h~ 162 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK------------------------------FLLQLSGHD 162 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCS
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCc------------------------------EEEEEeCCC
Confidence 4667888775 56555 56799999999999999997764 346778999
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeC--CCCCeEEEEecCCcEEEEEcCCceE--
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTES--PDPSLSSISCADNQVHLLKMPSMEI-- 428 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s--~~~~~l~~~~~d~~i~i~d~~~~~~-- 428 (762)
..|.+++|++++ .|++++.||+|++||+++++.. .+..|...|.+++|+ ++++++++++.|+.|++||+.++..
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC-
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccc
Confidence 999999999988 9999999999999999998875 456688999999998 6889999999999999999987653
Q ss_pred ---------------------EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 429 ---------------------IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 429 ---------------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
...+.+|. ..+.++ +++++++++++.|+.|++||+.+++.+..+..
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~- 308 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHM----------ASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG- 308 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCS----------SCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-
T ss_pred cccccCCcceEeeccCCCeEEEEEccCcc----------ceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-
Confidence 33344443 455554 78899999999999999999998876655432
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
| ...+.+++|+|+++++++++ .|+.|++||+.+++....+ .+| ...|.+++|+ +
T Consensus 309 ---~------~~~v~~~~~~~~~~~l~sg~---------~dg~i~vwd~~~~~~~~~~-----~~h-~~~v~~~~~~--~ 362 (464)
T 3v7d_B 309 ---H------TDRIYSTIYDHERKRCISAS---------MDTTIRIWDLENGELMYTL-----QGH-TALVGLLRLS--D 362 (464)
T ss_dssp ---C------SSCEEEEEEETTTTEEEEEE---------TTSCEEEEETTTTEEEEEE-----CCC-SSCEEEEEEC--S
T ss_pred ---C------CCCEEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCcEEEEE-----eCC-CCcEEEEEEc--C
Confidence 2 67799999999999999999 8899999999998766555 578 8899999997 5
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEE-ec
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAV-IG 646 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~-l~ 646 (762)
++|++++.||.|++||+.++...... .+...+..++|+|++++|++++|+.|++||+.+++++.. +.
T Consensus 363 ~~l~s~s~dg~v~vwd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~ 430 (464)
T 3v7d_B 363 KFLVSAAADGSIRGWDANDYSRKFSY------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL 430 (464)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEE------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTT
T ss_pred CEEEEEeCCCcEEEEECCCCceeeee------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhc
Confidence 79999999999999999886644333 256678889999999999999999999999999999885 67
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
+|...|.+++|+ +..++++++.|+.
T Consensus 431 ~~~~~v~~v~~~-~~~l~~~~~~~g~ 455 (464)
T 3v7d_B 431 KDADQIWSVNFK-GKTLVAAVEKDGQ 455 (464)
T ss_dssp TTCSEEEEEEEE-TTEEEEEEEETTE
T ss_pred cCCCcEEEEEec-CCEEEEEEEeCCe
Confidence 788999999998 3455555566764
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-36 Score=309.91 Aligned_cols=294 Identities=11% Similarity=0.118 Sum_probs=247.2
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--e-eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--K-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~-~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
.+..|...|.+++|+|++++|++++.|+.|++||+.+++ . ..+..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus 3 ~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 3 YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp EEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred eecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 345588999999999999999999999999999999985 3 4566788999999999999999999999999999999
Q ss_pred CceEEEEE--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 425 SMEIIRSI--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 425 ~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+++....+ ..+. ..+.+++|+|++++|++++.|+.|++||+..+............| ...+.
T Consensus 83 ~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------~~~i~ 146 (372)
T 1k8k_C 83 GRTWKPTLVILRIN----------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------RSTVL 146 (372)
T ss_dssp TTEEEEEEECCCCS----------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------CSCEE
T ss_pred CCeeeeeEEeecCC----------CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc------CCCee
Confidence 88765554 3343 789999999999999999999999999999877544333333333 67799
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEec------------------CCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG------------------TQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~------------------~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
+++|+|++++|++++ .|+.|++||+. .++.... +.+| ...|.+++|+
T Consensus 147 ~~~~~~~~~~l~~~~---------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~v~~~~~~ 211 (372)
T 1k8k_C 147 SLDWHPNSVLLAAGS---------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE-----SSSS-CGWVHGVCFS 211 (372)
T ss_dssp EEEECTTSSEEEEEE---------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE-----CCCC-SSCEEEEEEC
T ss_pred EEEEcCCCCEEEEEc---------CCCCEEEEEcccccccccccccccccccchhhheEe-----cCCC-CCeEEEEEEC
Confidence 999999999999998 88999999964 3333332 3577 8899999999
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC--CeE-
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR--NVL- 641 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~--~~~- 641 (762)
|++++|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++|+++.|+.|++|++.+ ++.
T Consensus 212 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~ 280 (372)
T 1k8k_C 212 ANGSRVAWVSHDSTVCLADADKKMAVATL-----------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLS 280 (372)
T ss_dssp SSSSEEEEEETTTEEEEEEGGGTTEEEEE-----------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceeEEE-----------ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEE
Confidence 99999999999999999999988765544 3577899999999999999999899999999987 431
Q ss_pred -------------------------------E------EEe-ccccCceeEEEEe-CCC---CEEEEEEcCCCCeEEEEE
Q 040987 642 -------------------------------V------AVI-GETLTPIMNMSFV-GSS---EYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 642 -------------------------------~------~~l-~~~~~~v~~~~~s-~dg---~~l~s~~~d~~~~v~vwd 679 (762)
. ..+ .+|..+|.+++|. ++| ++|++++.||. |++||
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~--i~~W~ 358 (372)
T 1k8k_C 281 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWD 358 (372)
T ss_dssp ECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEE
T ss_pred EeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCc--eEEEE
Confidence 0 223 4899999999966 677 99999999998 99999
Q ss_pred CCCCce
Q 040987 680 MSKLSI 685 (762)
Q Consensus 680 ~~~~~~ 685 (762)
+.+++.
T Consensus 359 ~~~~~~ 364 (372)
T 1k8k_C 359 VRSLES 364 (372)
T ss_dssp HHHHHH
T ss_pred ecChhH
Confidence 987543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-35 Score=309.93 Aligned_cols=323 Identities=16% Similarity=0.221 Sum_probs=272.3
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.+.. ++++++++|++|+.||.|++||+.+++ .+..+.+|..
T Consensus 112 ~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~------------------------------~~~~~~~h~~ 160 (445)
T 2ovr_B 112 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------CLRTLVGHTG 160 (445)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC------------------------------EEEECCCCSS
T ss_pred EEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCc------------------------------EEEEEcCCCC
Confidence 566788887643 355578999999999999999997664 3467789999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|.+++|+ ++.+++++.||+|++||+.+++.. .+..|...|.++.++ ++.+++++.|+.|++||+.+++.+..+.
T Consensus 161 ~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~ 236 (445)
T 2ovr_B 161 GVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLM 236 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEc
Confidence 99999997 569999999999999999998875 456788899999985 6789999999999999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+|. ..+.++++ +++++++++.||.|++||+.+++.+..+. .| ...+.+++| +++++
T Consensus 237 ~~~----------~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~------~~~v~~~~~--~~~~l 292 (445)
T 2ovr_B 237 GHV----------AAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQ----GH------TNRVYSLQF--DGIHV 292 (445)
T ss_dssp CCS----------SCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEEC----CC------SSCEEEEEE--CSSEE
T ss_pred CCc----------ccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEec----CC------CCceEEEEE--CCCEE
Confidence 877 78888888 78899999999999999999886655543 22 667899988 88999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
++++ .|+.|++||+.+++....+ .+| ...+.++.+ +++++++++.||.|++||+.+++....+
T Consensus 293 ~~~~---------~d~~i~i~d~~~~~~~~~~-----~~~-~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 355 (445)
T 2ovr_B 293 VSGS---------LDTSIRVWDVETGNCIHTL-----TGH-QSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTL 355 (445)
T ss_dssp EEEE---------TTSCEEEEETTTCCEEEEE-----CCC-CSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEe---------CCCeEEEEECCCCCEEEEE-----cCC-cccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 9999 8899999999998876655 577 778888877 4679999999999999999887765544
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEe-----ccccCceeEEEEeCCCCEEEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVI-----GETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l-----~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
. ....|...|++++|+ +++|++++ ||.|++||+.+++.+..+ .+|.+.|++++|+|++.+|+++
T Consensus 356 ~--------~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 356 Q--------GPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp C--------STTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred c--------cCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 2 112377899999995 67999998 999999999999998888 5688889999999999999999
Q ss_pred EcCCC--CeEEEEECCCC
Q 040987 668 SWGSK--PQLSVWNMSKL 683 (762)
Q Consensus 668 ~~d~~--~~v~vwd~~~~ 683 (762)
+.||. ..|.+||....
T Consensus 426 ~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 426 SRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CSSSSSCCEEEEEECCCC
T ss_pred ccCCCCccEEEEEECCCC
Confidence 99983 34999998753
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=315.88 Aligned_cols=321 Identities=15% Similarity=0.208 Sum_probs=263.4
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
....+.+|...|.. ++++++++|++|+ ||.|++||+.+++.+.++.+|.+.|++++|+|++ +|++|+.|
T Consensus 113 ~~~~l~~h~~~v~~--~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~--------~l~s~s~d 182 (464)
T 3v7d_B 113 QRTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------ILVSGSTD 182 (464)
T ss_dssp EEEEEECCSSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT--------EEEEEETT
T ss_pred ceEEEcCCCCCcEE--EEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC--------EEEEEeCC
Confidence 44578999998753 2444678999999 7999999999999999999999999999999987 67799999
Q ss_pred CeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
++|++||+.+++++..+..|. ++.++.|. ...+...+ ++|+.|+.|++||+
T Consensus 183 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--------------------~~~~~~~l--------~s~s~d~~i~vwd~ 234 (464)
T 3v7d_B 183 RTVRVWDIKKGCCTHVFEGHNSTVRCLDIV--------------------EYKNIKYI--------VTGSRDNTLHVWKL 234 (464)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEEE--------------------ESSSCEEE--------EEEETTSCEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCccEEEEEe--------------------cCCCCCEE--------EEEcCCCcEEEeeC
Confidence 999999999999999998876 77777551 11111111 67889999999999
Q ss_pred CCccccc----------------------eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeee
Q 040987 222 TESRLAG----------------------GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 222 ~~~~~~~----------------------~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 278 (762)
.++.... ....+|...+.++ ++++++++++ .|+.|++||+.+++.. ....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~-----~~~~ 307 (464)
T 3v7d_B 235 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCL-----YILS 307 (464)
T ss_dssp CCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEE-----EEEC
T ss_pred CCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEE-----EEec
Confidence 9876541 2455677777765 6889999855 7999999999988754 5667
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeE
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSV 358 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 358 (762)
+|...|.+++|+|++++|++|+.||.|++||+.+++ ++..+.+|...|.+
T Consensus 308 ~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~------------------------------~~~~~~~h~~~v~~ 357 (464)
T 3v7d_B 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE------------------------------LMYTLQGHTALVGL 357 (464)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE------------------------------EEEEECCCSSCEEE
T ss_pred CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc------------------------------EEEEEeCCCCcEEE
Confidence 899999999999999999999999999999997764 34678889999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE-EccCCC
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS-ISGIKL 437 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~ 437 (762)
++|+ +++|++++.||.|++||+.++.......+...+..++|+++++++++++ ++.|++||+.+++.+.. +..+.
T Consensus 358 ~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~- 433 (464)
T 3v7d_B 358 LRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDA- 433 (464)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTC-
T ss_pred EEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCC-
Confidence 9997 5799999999999999999988776666777888899999999999987 89999999999998876 44443
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
..|.+++|+ +..++++++.+|.+.+|
T Consensus 434 ---------~~v~~v~~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 434 ---------DQIWSVNFK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp ---------SEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred ---------CcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence 789999998 34455555667655544
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=306.99 Aligned_cols=299 Identities=13% Similarity=0.159 Sum_probs=244.8
Q ss_pred eeeeccccceeEEEEecCCCEEE-EEec---CCeEEEEecCCCcee--ccCCCCCCeEEEEeCCC---CCeEEEEecCCc
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLY-SGGK---EGVLVVWQLDTGKKK--FLPRIGSPLLYFTESPD---PSLSSISCADNQ 417 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~-s~~~---dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~---~~~l~~~~~d~~ 417 (762)
..+.+|...|.+++|+|++..++ +++. |+.|++||+.+++.. ....+...|.+++|+|+ +++|++++.|+.
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~ 91 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN 91 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence 45678999999999999996655 5555 899999999998774 33467889999999998 699999999999
Q ss_pred EEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEE------EeCCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecc
Q 040987 418 VHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIA------FNHDGGLVALRAENYCIHFYSLLDDR-GISEVQVCER 489 (762)
Q Consensus 418 i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~------~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~ 489 (762)
|++||+.+++ .+..+.+|. ..|.++. |+|++++|++++.|+.|++||+.++. ....+.....
T Consensus 92 i~iwd~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 92 LHIWNLEAPEMPVYSVKGHK----------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp EEEECTTSCSSCSEEECCCS----------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred EEEEeCCCCCccEEEEEecc----------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 9999999887 788888877 7788885 56899999999999999999999876 4444432221
Q ss_pred cccCCCCcceeEEEEE----EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 490 NHQPGDDVTVVVTLVA----LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~----~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
.. ...+.+++ |+|+++++++++ .++.|++||+.+++.... ..| ...|.+++|+|
T Consensus 162 ~~------~~~v~~~~~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~------~~~-~~~v~~~~~~~ 219 (357)
T 3i2n_A 162 EN------KRDCWTVAFGNAYNQEERVVCAGY---------DNGDIKLFDLRNMALRWE------TNI-KNGVCSLEFDR 219 (357)
T ss_dssp SC------CCCEEEEEEECCCC-CCCEEEEEE---------TTSEEEEEETTTTEEEEE------EEC-SSCEEEEEESC
T ss_pred CC------CCceEEEEEEeccCCCCCEEEEEc---------cCCeEEEEECccCceeee------cCC-CCceEEEEcCC
Confidence 11 34688888 789999999998 889999999998865332 346 78999999999
Q ss_pred ---CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCCC-
Q 040987 566 ---NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA-ETVITLWDPDRN- 639 (762)
Q Consensus 566 ---d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~~- 639 (762)
++.+|++++.||.|++||+.++.....+. ......|...|++++|+|+++ +|++++ ||.|++||+.++
T Consensus 220 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 220 KDISMNKLVATSLEGKFHVFDMRTQHPTKGFA------SVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI 293 (357)
T ss_dssp SSSSCCEEEEEESTTEEEEEEEEEEETTTEEE------EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred CCCCCCEEEEECCCCeEEEEeCcCCCccccee------eeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence 99999999999999999999876654431 112336889999999999999 788888 999999998754
Q ss_pred ------------------eEEEEeccccCceeEEEEeCCCCEEE-EEEcCCCCeEEEEECCCCce
Q 040987 640 ------------------VLVAVIGETLTPIMNMSFVGSSEYLV-ATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 640 ------------------~~~~~l~~~~~~v~~~~~s~dg~~l~-s~~~d~~~~v~vwd~~~~~~ 685 (762)
+++..+.+|..+|.+++|+|++++|+ +++.|+. |++||+.+.+.
T Consensus 294 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~--i~iw~~~~~~~ 356 (357)
T 3i2n_A 294 QRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQT--VRVLIVTKLNK 356 (357)
T ss_dssp CC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSE--EEEEEECC---
T ss_pred ccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCc--EEEEECCCccc
Confidence 46778889999999999999999998 8999998 99999987654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-36 Score=312.77 Aligned_cols=315 Identities=11% Similarity=0.097 Sum_probs=251.0
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc-------eeccCCCCCCeEEEEeCCC----C---CeEEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK-------KKFLPRIGSPLLYFTESPD----P---SLSSI 411 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~-------~~~~~~~~~~v~~~~~s~~----~---~~l~~ 411 (762)
...+.+|...|.+++|+| ++|++++.||.|++||+.+++ ...+..|...|.+++|+|+ + ++|++
T Consensus 9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s 86 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT 86 (397)
T ss_dssp EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence 467789999999999998 799999999999999999987 4556788899999999999 9 99999
Q ss_pred EecCCcEEEEEcCCceE-----EEEEccCCCCCCCCCcccCceeeEEEe----CCCCE-EEEeecCceEEEEEcCC----
Q 040987 412 SCADNQVHLLKMPSMEI-----IRSISGIKLPCPLPEEYKGLCRDIAFN----HDGGL-VALRAENYCIHFYSLLD---- 477 (762)
Q Consensus 412 ~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~-l~~~~~dg~i~i~d~~~---- 477 (762)
++.|+.|++|++.+++. ...+..+.... ....|.+++|+ |++++ |++++.||.|++||+.+
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDM-----KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 161 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTG-----GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH
T ss_pred EcCCCCEEEEEccCCcccccccceeeccccccc-----CCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc
Confidence 99999999999998776 77777763110 01689999999 99999 99999999999999988
Q ss_pred --CCcee-----eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 478 --DRGIS-----EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 478 --~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
++.+. .+..... ....+...+.+++|+|++ ++++++ .++.|++||+.+++....+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~-~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~-- 226 (397)
T 1sq9_A 162 SNSLTLNWSPTLELQGTVE---SPMTPSQFATSVDISERG-LIATGF---------NNGTVQISELSTLRPLYNFESQ-- 226 (397)
T ss_dssp HHHTTTCCCCEEEEEEEEC---CSSSSCCCCCEEEECTTS-EEEEEC---------TTSEEEEEETTTTEEEEEEECC--
T ss_pred cccceeeccCcceeeeeec---cccCCCCCceEEEECCCc-eEEEEe---------CCCcEEEEECCCCceeEEEecc--
Confidence 55554 3322000 001126679999999999 999998 8899999999988766555310
Q ss_pred cCCC--CCceEEEEEcCCCCeEEEEeCC---CcEEEEEcccccccccccCCceee--eeecccCCCCeEEEEEcCCCcEE
Q 040987 551 EPHR--DAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQKDLQSSGWSC--HAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 551 ~~h~--~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
.+|. ...|.+++|+|++++|++++.| +.|++||+.+++....+....... ......|...|.+++|+|++++|
T Consensus 227 ~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 306 (397)
T 1sq9_A 227 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL 306 (397)
T ss_dssp C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred ccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEE
Confidence 0021 4589999999999999999999 999999999877655542000000 00000178899999999999999
Q ss_pred EEEc-CCeEEEEeCCCCeEEEEec------cc---------------cCceeEEEEeCCC----------CEEEEEEcCC
Q 040987 624 AVAA-ETVITLWDPDRNVLVAVIG------ET---------------LTPIMNMSFVGSS----------EYLVATSWGS 671 (762)
Q Consensus 624 a~~~-d~~i~iwd~~~~~~~~~l~------~~---------------~~~v~~~~~s~dg----------~~l~s~~~d~ 671 (762)
++++ |+.|++||+.+++++..+. +| ..+|.+++|+|++ ++|++++.|+
T Consensus 307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR 386 (397)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence 9998 9999999999999999998 78 8999999999998 7999999999
Q ss_pred CCeEEEEECCCCc
Q 040987 672 KPQLSVWNMSKLS 684 (762)
Q Consensus 672 ~~~v~vwd~~~~~ 684 (762)
. |++||+.+|+
T Consensus 387 ~--i~iw~~~~g~ 397 (397)
T 1sq9_A 387 S--IRWFREAGGK 397 (397)
T ss_dssp E--EEEEEEEC--
T ss_pred c--EEEEEcCCCC
Confidence 8 9999998874
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=321.37 Aligned_cols=353 Identities=12% Similarity=0.135 Sum_probs=264.2
Q ss_pred EECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccC---Cceee
Q 040987 242 TISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFG---DRTFA 317 (762)
Q Consensus 242 ~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~---~~~~~ 317 (762)
.|+|+++.++.+. .|+... + .+..+..+|.+.|++++|+| ++++|++|+.||.|++||+.+ +...
T Consensus 34 ~f~~~~~~~~~~~-----~w~~~g-~----~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~- 102 (437)
T 3gre_A 34 EFGPIQEIVRSPN-----MGNLRG-K----LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVY- 102 (437)
T ss_dssp GGCCCCCCCCCCC-----GGGCCC-C----EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCC-
T ss_pred hcCCccccccccc-----cccccc-e----EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccc-
Confidence 4788888887543 366433 2 22244478999999999999 999999999999999999865 2111
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecC---CCceec-----
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD---TGKKKF----- 389 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~---~~~~~~----- 389 (762)
.....+ .|...|.+++|+|++++|++++.|+.|++||++ +++...
T Consensus 103 --------------------------~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~ 155 (437)
T 3gre_A 103 --------------------------SSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE 155 (437)
T ss_dssp --------------------------SCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE
T ss_pred --------------------------ceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc
Confidence 111222 589999999999999999999999999999995 443321
Q ss_pred ------cCC--CCCCeEEEE--eCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc--CCCCCCCCCcccCceeeEEEeCC
Q 040987 390 ------LPR--IGSPLLYFT--ESPDPSLSSISCADNQVHLLKMPSMEIIRSISG--IKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 390 ------~~~--~~~~v~~~~--~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.. +...+.++. +++++.++++++.|+.|++||+++++.+..+.+ |. +.|.+++|+|+
T Consensus 156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~----------~~v~~~~~s~~ 225 (437)
T 3gre_A 156 CIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRH----------GAVSSICIDEE 225 (437)
T ss_dssp EEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGG----------CCEEEEEECTT
T ss_pred eeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCC----------CceEEEEECCC
Confidence 111 556677777 678999999999999999999999999999987 44 78999999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe----cCCCeEEEEeeeccccCCCceeEEEE
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS----QDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
+++|++++.||.|++||+++++.+..+.. .+ ...|.+++|+ |++++|++++ .|+.|++
T Consensus 226 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~------~~~v~~~~~~~~~s~~~~~l~s~~---------~dg~i~i 287 (437)
T 3gre_A 226 CCVLILGTTRGIIDIWDIRFNVLIRSWSF---GD------HAPITHVEVCQFYGKNSVIVVGGS---------SKTFLTI 287 (437)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEEBC---TT------CEEEEEEEECTTTCTTEEEEEEES---------TTEEEEE
T ss_pred CCEEEEEcCCCeEEEEEcCCccEEEEEec---CC------CCceEEEEeccccCCCccEEEEEc---------CCCcEEE
Confidence 99999999999999999998766555432 11 5679999655 5688999998 8999999
Q ss_pred EEecCCCceeEEEEE-------------------eecC--CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 534 WVSGTQNKEFTLSTI-------------------VYEP--HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 534 wd~~~~~~~~~~~~~-------------------~~~~--h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
||+.+++....+... .+.+ | ...|++++|+ ++++|++++.|+.|++||+.+++....
T Consensus 288 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 288 WNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRS-LNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCS-GGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEcCCCcEEEEEEcCCCCCccceecccccccccceeccccc-CCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999988766655411 0112 5 7789999999 789999999999999999999887665
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCC--CCEEEEEEcC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS--SEYLVATSWG 670 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d--g~~l~s~~~d 670 (762)
+. ........+....++++..+++.. |+...+........|...|++++|+++ +.+|++++.|
T Consensus 366 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~d 430 (437)
T 3gre_A 366 VI--------SPSRFSDVFIPTQVTANLTMLLRK-------MKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNS 430 (437)
T ss_dssp EE--------CC--CCCEEEEEEEETTEEEEEEE-------CC-------------CCCEEEEEEEESSSSEEEEEEETT
T ss_pred Ee--------cccccCceEEEEEeecceEEEEEe-------cccccccccCcccccccceeeEeeeccCCceEEEEEcCC
Confidence 52 001123445566676766655544 333444455566679999999999998 8899999999
Q ss_pred CCCeEEEEE
Q 040987 671 SKPQLSVWN 679 (762)
Q Consensus 671 ~~~~v~vwd 679 (762)
|. |++|+
T Consensus 431 G~--I~iw~ 437 (437)
T 3gre_A 431 GL--IGIFQ 437 (437)
T ss_dssp SC--EEEEC
T ss_pred ce--EEEeC
Confidence 98 99995
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=336.46 Aligned_cols=487 Identities=11% Similarity=0.028 Sum_probs=347.2
Q ss_pred CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC------Ce
Q 040987 71 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD------GT 144 (762)
Q Consensus 71 h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d------~~ 144 (762)
+...+.. ++||+ ++||++..+.|++||+.+++ .+.+.+|...|.+++||||| ++||+++.+ ..
T Consensus 13 ~~~~~~~-~~~S~--~~iaf~~~~~l~~~~~~gg~-~~~lt~~~~~v~~~~~SPDG-------~~la~~s~~~~~~~~~~ 81 (1045)
T 1k32_A 13 MPNLLLN-PDIHG--DRIIFVCCDDLWEHDLKSGS-TRKIVSNLGVINNARFFPDG-------RKIAIRVMRGSSLNTAD 81 (1045)
T ss_dssp CCCCCEE-EEEET--TEEEEEETTEEEEEETTTCC-EEEEECSSSEEEEEEECTTS-------SEEEEEEEESTTCCEEE
T ss_pred ccceEeC-cEEeC--CEEEEEECCcEEEEECCCCc-EEEeeeCCCcccCeEECCCC-------CEEEEEEeeccCCCCCe
Confidence 3456665 89995 69999998999999998776 45677899999999999999 566666543 48
Q ss_pred EEEEeCCCcceEEEEEecc-ce-------EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 145 IKYWDFSVPELLKTIDVKF-SI-------FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~-~v-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
|.+||+.+++ .+.+..|. .+ ..++| ++|++ ++|....+. .-.....|
T Consensus 82 i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~--------SpDg~----ll~~~~~~~------------~~~~~~~l 136 (1045)
T 1k32_A 82 LYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGF--------DPDGN----LIISTDAMQ------------PFSSMTCL 136 (1045)
T ss_dssp EEEEETTTTE-EEECCCCCEEEETTEECSEEEEE--------CTTCC----EEEEECTTS------------SSTTCCEE
T ss_pred EEEEECCCCC-eEEcccCCCcccccccccccccC--------CCCCE----EEEEECCcC------------CCcccceE
Confidence 9999998887 45566655 44 56666 55664 333321100 00023468
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-------------CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-------------QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+|++.+++.. .+..+ ....++|+| | +++++. +....+|....+. .. ..+.+|...
T Consensus 137 ~~~~~~~g~~~--~l~~~--~~~~~~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~----~~-~~l~~~~~~ 205 (1045)
T 1k32_A 137 YRVENDGINFV--PLNLG--PATHILFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG----AF-KKIVDMSTH 205 (1045)
T ss_dssp EEEEGGGTEEE--ECCSC--SCSEEEEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETT----EE-EEEECCSSC
T ss_pred EEEECCCCCeE--EecCC--CcceeeeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCC----Ce-EECcCCCCc
Confidence 88888777654 22222 345778999 8 777642 2345666543322 12 233789999
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
+.++.|+++ .++++++.++.+.+|.+.... .....+..|. .+..++|+|
T Consensus 206 v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-----------------------------~~~~~l~~~~-~~~~~~~Sp 254 (1045)
T 1k32_A 206 VSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-----------------------------KDLRKHTSFT-DYYPRHLNT 254 (1045)
T ss_dssp CEEEEEETT-EEEEEECTTSSCEEEEEETTS-----------------------------CSCEECCCCC-SSCEEEEEE
T ss_pred ccceEEeCC-EEEEEEeccCceEEEEEeCCC-----------------------------CcceEecCCC-CcceeeEcC
Confidence 999999998 667777888999999864311 1123344444 356779999
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCC-----------CCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPR-----------IGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~-----------~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
||++|+++ .++.|++||+...+...+.. +...+..++|+ |||++|++++ ++.+++|+..+++...
T Consensus 255 DG~~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~- 331 (1045)
T 1k32_A 255 DGRRILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK- 331 (1045)
T ss_dssp SSSCEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-
T ss_pred CCCEEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-
Confidence 99999887 47999999996554443222 12358899999 9999999886 8899999998876543
Q ss_pred EccCCCCCCCCCcccC-ceeeEEEeCCCCEEEEeecCceEE-EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 432 ISGIKLPCPLPEEYKG-LCRDIAFNHDGGLVALRAENYCIH-FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~dg~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+..+. . .+..++|+ ||+.+++++.++.+. +||+.+++.. .+. .+ ...+..++|+||
T Consensus 332 ~~~~~----------~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~----~~------~~~~~~~~~SpD 389 (1045)
T 1k32_A 332 VPEPL----------RIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE----EN------LGNVFAMGVDRN 389 (1045)
T ss_dssp CSCCS----------CEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC----CC------CCSEEEEEECTT
T ss_pred ccCCC----------cceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec----CC------ccceeeeEECCC
Confidence 44433 4 78899999 999999999888899 9998876432 111 11 456899999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC----------cE
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG----------DF 579 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg----------~i 579 (762)
|++|++++ .++.|++||+.+++....+ .+| ...+.+++|||||++|++++.++ .|
T Consensus 390 G~~la~~~---------~~~~v~~~d~~tg~~~~~~-----~~~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i 454 (1045)
T 1k32_A 390 GKFAVVAN---------DRFEIMTVDLETGKPTVIE-----RSR-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 454 (1045)
T ss_dssp SSEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECS-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred CCEEEEEC---------CCCeEEEEECCCCceEEec-----cCC-CCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence 99999998 7789999999988754433 357 77889999999999999887654 89
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe------------------
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV------------------ 640 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~------------------ 640 (762)
++||+.+++.... ..+...+..++|+|||++|++++ ++...+|+.....
T Consensus 455 ~l~d~~~g~~~~l------------~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (1045)
T 1k32_A 455 HVYDMEGRKIFAA------------TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS 522 (1045)
T ss_dssp EEEETTTTEEEEC------------SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC
T ss_pred EEEECCCCcEEEe------------eCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCC
Confidence 9999988763322 24567788999999999999887 6666666533221
Q ss_pred -------------------------EEEEeccccCceeEEEEeCCCCEEEE-----------EEcCCCCeEEEEECCCCc
Q 040987 641 -------------------------LVAVIGETLTPIMNMSFVGSSEYLVA-----------TSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 641 -------------------------~~~~l~~~~~~v~~~~~s~dg~~l~s-----------~~~d~~~~v~vwd~~~~~ 684 (762)
.+..+..|.+.+..++|+|||+++++ .+.++...|.+||+.+++
T Consensus 523 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~ 602 (1045)
T 1k32_A 523 PNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK 602 (1045)
T ss_dssp CCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCC
T ss_pred CCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCc
Confidence 12233446677899999999988886 122333348999999988
Q ss_pred eee
Q 040987 685 ISW 687 (762)
Q Consensus 685 ~~~ 687 (762)
...
T Consensus 603 ~~~ 605 (1045)
T 1k32_A 603 VTE 605 (1045)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=304.43 Aligned_cols=314 Identities=12% Similarity=0.133 Sum_probs=248.7
Q ss_pred eeeeeeeccCcCeEEEEEcCCCcEE-EEeec---CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQRIV-AAGDV---TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~~l-~~~~~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.......+|...|.+++|+|+++.+ ++|+. ||.|++||+.+++... .
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~-----------------------------~ 59 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKL-----------------------------L 59 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEE-----------------------------E
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccc-----------------------------e
Confidence 3445667899999999999999655 56665 8999999998765322 2
Q ss_pred eeeccccceeEEEEecC---CCEEEEEecCCeEEEEecCCCc-e-eccCCCCCCeEEEE------eCCCCCeEEEEecCC
Q 040987 348 TWHWHPSEVSVLIFSSD---GAYLYSGGKEGVLVVWQLDTGK-K-KFLPRIGSPLLYFT------ESPDPSLSSISCADN 416 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~i~~wd~~~~~-~-~~~~~~~~~v~~~~------~s~~~~~l~~~~~d~ 416 (762)
...+|...|.+++|+|+ +++|++++.|+.|++||+.+++ . ..+..|...|.++. |+|++++|++++.|+
T Consensus 60 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~ 139 (357)
T 3i2n_A 60 REIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDG 139 (357)
T ss_dssp EEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTS
T ss_pred eeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCC
Confidence 23478999999999998 6999999999999999999887 3 45677889999994 578999999999999
Q ss_pred cEEEEEcCCce-EEEEEccCCCCCCCCCcccCceeeEE----EeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc
Q 040987 417 QVHLLKMPSME-IIRSISGIKLPCPLPEEYKGLCRDIA----FNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH 491 (762)
Q Consensus 417 ~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~----~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 491 (762)
.|++||+.+++ ....+..+.... ...+.+++ |+|+++++++++.|+.|++||+.+++...... +
T Consensus 140 ~i~vwd~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~ 208 (357)
T 3i2n_A 140 TVKVWDPRQKDDPVANMEPVQGEN------KRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-----I 208 (357)
T ss_dssp CEEEECTTSCSSCSEEECCCTTSC------CCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-----C
T ss_pred eEEEEeCCCCCCcceeccccCCCC------CCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-----C
Confidence 99999999876 677776554211 14678887 78899999999999999999999876533321 1
Q ss_pred cCCCCcceeEEEEEEec---CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ---DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp---~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
...+.+++|+| ++++|++++ .++.|++||+.+++....+......+| ...|.+++|+|+++
T Consensus 209 ------~~~v~~~~~~~~~~~~~~l~~~~---------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~ 272 (357)
T 3i2n_A 209 ------KNGVCSLEFDRKDISMNKLVATS---------LEGKFHVFDMRTQHPTKGFASVSEKAH-KSTVWQVRHLPQNR 272 (357)
T ss_dssp ------SSCEEEEEESCSSSSCCEEEEEE---------STTEEEEEEEEEEETTTEEEEEEEECC-SSCEEEEEEETTEE
T ss_pred ------CCceEEEEcCCCCCCCCEEEEEC---------CCCeEEEEeCcCCCcccceeeeccCCC-cCCEEEEEECCCCC
Confidence 56799999999 999999998 889999999998877665554444588 89999999999998
Q ss_pred -eEEEEeCCCcEEEEEccccccccccc--------CCceeeeeecccCCCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCC
Q 040987 569 -AAVSSSYGGDFKVWICNDELQQKDLQ--------SSGWSCHAVGSYKKKAMTAAAFSADGSVLA-VAA-ETVITLWDPD 637 (762)
Q Consensus 569 -~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~ 637 (762)
+|++++.||.|++||+..+....... ...+.+......|...|++++|+|+|++|+ +++ |+.|++||+.
T Consensus 273 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 273 ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECC
Confidence 89999999999999998765442211 012234455667899999999999999998 677 9999999998
Q ss_pred CCeE
Q 040987 638 RNVL 641 (762)
Q Consensus 638 ~~~~ 641 (762)
+.+.
T Consensus 353 ~~~~ 356 (357)
T 3i2n_A 353 KLNK 356 (357)
T ss_dssp C---
T ss_pred Cccc
Confidence 7654
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=305.89 Aligned_cols=299 Identities=14% Similarity=0.148 Sum_probs=239.9
Q ss_pred eeeeeccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 274 RKITLHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
...+.+|...|.+++|+|++ ++|++|+.||.|++||+.+++... .....+|
T Consensus 66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----------------------------~~~~~~h 117 (383)
T 3ei3_B 66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS----------------------------FIQGMGP 117 (383)
T ss_dssp EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE----------------------------EECCCST
T ss_pred EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce----------------------------eeecCCc
Confidence 35667899999999999999 899999999999999997664321 1233469
Q ss_pred ccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 353 PSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 353 ~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
...|.+++|+| ++++|++++.|+.|++||+.+.....+.. +...+.+++|+|++++|++++.|+.|++||+ +++.
T Consensus 118 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 118 GDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp TCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred CCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 99999999999 78999999999999999999755544433 3478999999999999999999999999999 5778
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
+..+.+|. ..|.+++|+|+++ ++++++.|+.|++||+.+.+......... .| ...+.+++|+
T Consensus 197 ~~~~~~h~----------~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~------~~~v~~~~~s 259 (383)
T 3ei3_B 197 IFKEKLHK----------AKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH------EKPVNAAYFN 259 (383)
T ss_dssp EEEEECSS----------SCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC------SSCEEEEEEC
T ss_pred EEEeccCC----------CcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC------CCceEEEEEc
Confidence 88888877 7899999999999 89999999999999998743221211111 12 6779999999
Q ss_pred c-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe--ecCC---------CCCceEEEEEcCCCCeEEEEeC
Q 040987 508 Q-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV--YEPH---------RDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 508 p-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~~h---------~~~~v~~~~~spd~~~l~~~~~ 575 (762)
| ++++|++++ .|+.|++||+.+++....+.... ...| +...+..++|+|++++ +++.
T Consensus 260 ~~~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~ 328 (383)
T 3ei3_B 260 PTDSTKLLTTD---------QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND 328 (383)
T ss_dssp TTTSCEEEEEE---------SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred CCCCCEEEEEc---------CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence 9 999999999 88999999999888766554211 0111 0234555777777777 7778
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDR 638 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~ 638 (762)
|+.|++||+.+++....+. ...+...+..++|+|+|++|++++|+.|++||+++
T Consensus 329 d~~i~iwd~~~~~~~~~l~---------~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 329 KRTIDIYDANSGGLVHQLR---------DPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp CCCEEEEETTTCCEEEEEC---------BTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred CCeEEEEecCCCceeeeec---------CCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 9999999999887765542 22356778888999999999999999999999875
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=306.41 Aligned_cols=304 Identities=14% Similarity=0.180 Sum_probs=240.2
Q ss_pred cccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceecc---CCCCCCeEEEEeCC-CCCeEEEEecCCc
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFL---PRIGSPLLYFTESP-DPSLSSISCADNQ 417 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~-~~~~l~~~~~d~~ 417 (762)
......+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++.... ..|...|.+++|+| ++++|++++.|+.
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~ 142 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGA 142 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCE
Confidence 34567788999999999999999 9999999999999999998877533 35888999999999 7899999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
|++||+.+ .....+..+.. +...+.+++|+|++++|++++.|+.|++||+. ++.+..+. .|
T Consensus 143 i~iwd~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~----~h------ 203 (383)
T 3ei3_B 143 TTLRDFSG-SVIQVFAKTDS-------WDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEK----LH------ 203 (383)
T ss_dssp EEEEETTS-CEEEEEECCCC-------SSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEE----CS------
T ss_pred EEEEECCC-CceEEEeccCC-------CCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEec----cC------
Confidence 99999996 55555554432 23679999999999999999999999999994 44444433 22
Q ss_pred ceeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeC
Q 040987 498 TVVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSY 575 (762)
Q Consensus 498 ~~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~ 575 (762)
...|.+++|+|+++ +|++++ .|+.|++||+.+.+....+... .+| ...|.+++|+| ++++|++++.
T Consensus 204 ~~~v~~~~~~~~~~~~l~s~~---------~d~~i~iwd~~~~~~~~~~~~~--~~~-~~~v~~~~~s~~~~~~l~~~~~ 271 (383)
T 3ei3_B 204 KAKVTHAEFNPRCDWLMATSS---------VDATVKLWDLRNIKDKNSYIAE--MPH-EKPVNAAYFNPTDSTKLLTTDQ 271 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEE---------TTSEEEEEEGGGCCSTTCEEEE--EEC-SSCEEEEEECTTTSCEEEEEES
T ss_pred CCcEEEEEECCCCCCEEEEEe---------CCCEEEEEeCCCCCcccceEEE--ecC-CCceEEEEEcCCCCCEEEEEcC
Confidence 67899999999999 899998 8999999999984432111111 257 88999999999 9999999999
Q ss_pred CCcEEEEEcccccccccccCCc-ee-----eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-
Q 040987 576 GGDFKVWICNDELQQKDLQSSG-WS-----CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE- 647 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~- 647 (762)
|+.|++||+.++.....+.... .. .....-.....+..++|+|||++ +++ |+.|++||+.+++++..+.+
T Consensus 272 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~ 349 (383)
T 3ei3_B 272 RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDP 349 (383)
T ss_dssp SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBT
T ss_pred CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCC
Confidence 9999999999877654432000 00 00000011245556778888877 566 99999999999999999987
Q ss_pred -ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 648 -TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 648 -~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
|...+..++|+||+++|++++ |+. |++||+++
T Consensus 350 ~~~~~~~~~~~s~~g~~l~s~s-d~~--i~iw~~~~ 382 (383)
T 3ei3_B 350 NAAGIISLNKFSPTGDVLASGM-GFN--ILIWNRED 382 (383)
T ss_dssp TBCSCCCEEEECTTSSEEEEEE-TTE--EEEEECC-
T ss_pred CCCceEEEEEEecCccEEEEec-CCc--EEEEecCC
Confidence 456688889999999999997 877 99999875
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=302.38 Aligned_cols=300 Identities=13% Similarity=0.108 Sum_probs=224.2
Q ss_pred cCcCeEEEEEcCCCcEEEEeecC-------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVT-------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
-..+|++++|+||+++|++|+.+ +.|++|++............ ......+.+|
T Consensus 13 ~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~--------------------~~~~~~l~~~ 72 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH--------------------ILSEFALEDN 72 (365)
T ss_dssp CSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE--------------------EEEEEECCTT
T ss_pred CCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeee--------------------eeeEEEccCC
Confidence 34689999999999999998753 36999998655321100000 0011346678
Q ss_pred ccceeEEEEecCCCEEEEEe-----------cCCeEEEEecCCCcee----------ccCCCCCCeEEEEeCCCCCeEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGG-----------KEGVLVVWQLDTGKKK----------FLPRIGSPLLYFTESPDPSLSSI 411 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~-----------~dg~i~~wd~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~ 411 (762)
...|.+++++ ++.++++. .|+.+++|++.+.... ....+...+.+++|||||+++++
T Consensus 73 ~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~ 150 (365)
T 4h5i_A 73 DDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAI 150 (365)
T ss_dssp SCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEE
T ss_pred CCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEE
Confidence 8888887764 55666653 4678999998765421 11223446889999999999876
Q ss_pred Ee--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 412 SC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 412 ~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
++ .|+.|++||+.+++.+..+. |. +.|.+++|+|||+++++++.+ .+++|+..++....... ..
T Consensus 151 as~~~d~~i~iwd~~~~~~~~~~~-~~----------~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~--~~ 216 (365)
T 4h5i_A 151 ASSKVPAIMRIIDPSDLTEKFEIE-TR----------GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKT--DF 216 (365)
T ss_dssp EESCSSCEEEEEETTTTEEEEEEE-CS----------SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEEC--CC
T ss_pred EECCCCCEEEEeECCCCcEEEEeC-CC----------CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeee--cC
Confidence 55 68999999999999988875 33 578999999999999998865 47777777766543322 12
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
.| ...+.+++|+|+++++++++.+ + +....+++|+........ .....+.+| ...|++++|+|||++
T Consensus 217 ~~------~~~v~~v~fspdg~~l~~~s~d----~-~~~~~i~~~~~~~~~~~~-~~~~~~~~~-~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 217 DK------NWSLSKINFIADDTVLIAASLK----K-GKGIVLTKISIKSGNTSV-LRSKQVTNR-FKGITSMDVDMKGEL 283 (365)
T ss_dssp CT------TEEEEEEEEEETTEEEEEEEES----S-SCCEEEEEEEEETTEEEE-EEEEEEESS-CSCEEEEEECTTSCE
T ss_pred CC------CCCEEEEEEcCCCCEEEEEecC----C-cceeEEeecccccceecc-eeeeeecCC-CCCeEeEEECCCCCc
Confidence 22 6789999999999999999832 0 012378889988765432 222334678 889999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
||+|+.|++|+|||+.+++.+..+ ..+|...|++++|||||++||+++ |++|+|||+..
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~----------~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIF----------KQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEE----------TTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEe----------cCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999988766543 357999999999999999999999 99999999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=311.85 Aligned_cols=323 Identities=14% Similarity=0.150 Sum_probs=248.0
Q ss_pred CCeEEEEecCCcc-eeeeecCcccccCCceeec-CCCEEEEEe-CCEEEEEEcccceEEeeec-------------CCcc
Q 040987 52 SGLCRTAEYPAVN-SKMIRGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTSTGLQISSLE-------------GHKA 115 (762)
Q Consensus 52 ~g~i~~~~~~~~~-~~~~~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~~~~~~~l~-------------~h~~ 115 (762)
++.+++|++...+ ...+.+|.+.|.+ ++|+| ++++||+++ ||.|+|||+.+++....+. +|..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGGGINT-LDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSSCEEE-EEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCCcEEE-EEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 4556788877544 4456889999998 99999 999999999 7999999999887655543 6999
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.|.+++|+|++. .+|++++.|+.|++||+.+++....+..
T Consensus 101 ~v~~~~~~~~~~------~~l~s~~~d~~i~iwd~~~~~~~~~~~~---------------------------------- 140 (408)
T 4a11_B 101 SVETVQWYPHDT------GMFTSSSFDKTLKVWDTNTLQTADVFNF---------------------------------- 140 (408)
T ss_dssp CEEEEEECTTCT------TCEEEEETTSEEEEEETTTTEEEEEEEC----------------------------------
T ss_pred cEEEEEEccCCC------cEEEEEeCCCeEEEeeCCCCccceeccC----------------------------------
Confidence 999999999443 6889999999999999999887766543
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC---CCCEEE-EEeCCeEEEEEccCchhhhh
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS---SGKYFG-IRKQRKLLIWKVPDVEAERV 271 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~la-~~~~~~i~iwd~~~~~~~~~ 271 (762)
...+.+++++| ++.+++ ++.++.|++||+.+++..
T Consensus 141 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-- 179 (408)
T 4a11_B 141 ---------------------------------------EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-- 179 (408)
T ss_dssp ---------------------------------------SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC--
T ss_pred ---------------------------------------CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee--
Confidence 23345556666 445777 457899999999988765
Q ss_pred eeeeeeeccCcCeEEEEEcCCCc-EEEEeecCCeEEEEeccCCcee-ecccccccccccccccCCCCcccCCccccceee
Q 040987 272 VMRKITLHHTKKLTVLAFHPTQR-IVAAGDVTGRILIWRGFGDRTF-ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW 349 (762)
Q Consensus 272 ~~~~~~~~~~~~v~~~~~sp~~~-~l~~~~~dg~v~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (762)
..+..|...|.+++|+|+++ .|++++.||.|++||+...... ...... ............
T Consensus 180 ---~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~ 241 (408)
T 4a11_B 180 ---HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH---------------NGKKSQAVESAN 241 (408)
T ss_dssp ---EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT---------------TTCSCCCTTTSS
T ss_pred ---eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc---------------ccccceeecccc
Confidence 56678999999999999998 5889999999999999765421 100000 000111223445
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR------IGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
..|...|.+++|+|++++|++++.|+.|++||+.+++...... ....+........+..+++++.++.|++||+
T Consensus 242 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~ 321 (408)
T 4a11_B 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTV 321 (408)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEET
T ss_pred ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEEC
Confidence 6799999999999999999999999999999999887643211 1112222333344566777789999999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
.+++.+..+.+|. +.|.+++|+|++++|++++.||.|++||+.+.+.+...
T Consensus 322 ~~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 322 YSGEQITMLKGHY----------KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TTCCEEEEECCCS----------SCEEEEEEETTTTEEEEEETTSCEEEEEECC-------
T ss_pred cCCcceeeeccCC----------CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCC
Confidence 9999999999887 78999999999999999999999999999988765443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=303.04 Aligned_cols=292 Identities=14% Similarity=0.126 Sum_probs=220.9
Q ss_pred ccccCCceeecCCCEEEEEeC--------CEEEEEEcccceE----------EeeecCCccceeEEEEeCCCCccccee-
Q 040987 73 SYVSSPPAFSNDVKRLLVCTS--------NTVSIFSTSTGLQ----------ISSLEGHKAPVTTVIVVPASTPATKIL- 133 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~~--------~~i~iwd~~~~~~----------~~~l~~h~~~V~~v~~s~~~~~~~~l~- 133 (762)
-+|.+ ++|+|||++||+|++ +.|+||++..+.. ...|.+|...|.+++++++. ++
T Consensus 15 ~PV~s-v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~~-----~~~ 88 (365)
T 4h5i_A 15 YPAYG-AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDASKGI-----ILV 88 (365)
T ss_dssp SCEEE-EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEETTE-----EEE
T ss_pred CCEEE-EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeCCCE-----EEE
Confidence 46887 999999999999973 2699999865431 13577899999999876542 00
Q ss_pred ------eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 134 ------SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 134 ------~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
..|++++.|+++++|++.++.....+. ....+
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~-----~~~~~------------------------------------- 126 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL-----TSVDF------------------------------------- 126 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE-----EEECS-------------------------------------
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEe-----eeece-------------------------------------
Confidence 123344556667777665433211110 00000
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCchhhhheeeeeeeccCcCe
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDVEAERVVMRKITLHHTKKL 284 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v 284 (762)
.....+...+.+++|||||++||++ .|+.|+|||+.+++.. ....|...|
T Consensus 127 ---------------------~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~------~~~~~~~~V 179 (365)
T 4h5i_A 127 ---------------------DASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK------FEIETRGEV 179 (365)
T ss_dssp ---------------------SCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE------EEEECSSCC
T ss_pred ---------------------eecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE------EEeCCCCce
Confidence 0112234567899999999998743 4799999999998753 223578889
Q ss_pred EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 285 TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
.+++|+|||++|++++.++ +.+|+..+++... .....+|...|.+++|+|+
T Consensus 180 ~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~----------------------------~~~~~~~~~~v~~v~fspd 230 (365)
T 4h5i_A 180 KDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA----------------------------RKTDFDKNWSLSKINFIAD 230 (365)
T ss_dssp CEEEECTTSSEEEEECSSC-EEEEETTTCCEEE----------------------------EECCCCTTEEEEEEEEEET
T ss_pred EEEEEccCCceEEecccee-EEEEEeccCccee----------------------------eeecCCCCCCEEEEEEcCC
Confidence 9999999999999998555 6666655543321 1345668889999999999
Q ss_pred CCEEEEEecCC----eEEEEecCCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE-cc
Q 040987 365 GAYLYSGGKEG----VLVVWQLDTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI-SG 434 (762)
Q Consensus 365 g~~l~s~~~dg----~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~ 434 (762)
++++++++.|+ .+++|++..... ..+..+...|.+++|+|||++|++++.|+.|+|||+.+++++..+ .+
T Consensus 231 g~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~g 310 (365)
T 4h5i_A 231 DTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQA 310 (365)
T ss_dssp TEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTS
T ss_pred CCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCc
Confidence 99999999887 688899877654 235677889999999999999999999999999999999999875 67
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
|. ..|.+++|+|||++|++++.|++|+|||+...
T Consensus 311 H~----------~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 311 HS----------FAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp SS----------SCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred cc----------CCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 77 78999999999999999999999999999654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-36 Score=317.12 Aligned_cols=340 Identities=10% Similarity=0.166 Sum_probs=257.0
Q ss_pred EEecCCcceeee-ecCcccccCCceeec-CCCEEEEEe-CCEEEEEEccc---ce---EEeeecCCccceeEEEEeCCCC
Q 040987 57 TAEYPAVNSKMI-RGGRSYVSSPPAFSN-DVKRLLVCT-SNTVSIFSTST---GL---QISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 57 ~~~~~~~~~~~~-~~h~~~v~~~~~~s~-dg~~la~~~-~~~i~iwd~~~---~~---~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
.|+........+ .+|.+.|.+ ++|+| |+++||+|+ |+.|+|||+.+ +. ....+ +|...|++++|+|++
T Consensus 47 ~w~~~g~~~~~~~~~h~~~V~~-~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~- 123 (437)
T 3gre_A 47 MGNLRGKLIATLMENEPNSITS-SAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNF- 123 (437)
T ss_dssp GGGCCCCEEEEECTTTTSCEEE-EEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTS-
T ss_pred cccccceEEeeeccCCCCceEE-EEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCC-
Confidence 488666666667 889999998 99999 999999999 79999999987 44 22333 599999999999999
Q ss_pred cccceeeeEEeeecCCeEEEEeCC---CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCc
Q 040987 128 PATKILSYCWTASLDGTIKYWDFS---VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHK 204 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (762)
.+|++++.|++|++||+. +++.+..+..+ .+..+.+.
T Consensus 124 ------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~i~~~~~~--------------------------------- 163 (437)
T 3gre_A 124 ------DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE-CIRKINLK--------------------------------- 163 (437)
T ss_dssp ------SEEEEEETTSEEEEEEEEEEEETTEEEEEEEE-EEEEEEGG---------------------------------
T ss_pred ------CEEEEEeCCCEEEEEEeccccCCceeeccccc-eeEEEEcc---------------------------------
Confidence 688999999999999995 77777766654 34433220
Q ss_pred cCCCCCCccccEEEEecCCccccceeeeccCCCceEEE--ECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeec--
Q 040987 205 KEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVIT--ISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLH-- 279 (762)
Q Consensus 205 ~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~--~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-- 279 (762)
..++...+.++. ++|++++|+++ .|+.|++||+.+++.. ..+..
T Consensus 164 --------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-----~~~~~~~ 212 (437)
T 3gre_A 164 --------------------------NFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL-----QIIENSP 212 (437)
T ss_dssp --------------------------GGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE-----EEEECCG
T ss_pred --------------------------CcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee-----EEEccCC
Confidence 000344566666 77999999855 7899999999988754 44445
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccceeE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSV 358 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~ 358 (762)
|...|.+++|+|++++|++|+.||.|++||+..++.+ ..+. .|...|.+
T Consensus 213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------~~~~~~~~~~v~~ 262 (437)
T 3gre_A 213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI------------------------------RSWSFGDHAPITH 262 (437)
T ss_dssp GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE------------------------------EEEBCTTCEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE------------------------------EEEecCCCCceEE
Confidence 8899999999999999999999999999999776433 4443 67778999
Q ss_pred EEEe----cCCCEEEEEecCCeEEEEecCCCceec-cC--------------------------CCCCCeEEEEeCCCCC
Q 040987 359 LIFS----SDGAYLYSGGKEGVLVVWQLDTGKKKF-LP--------------------------RIGSPLLYFTESPDPS 407 (762)
Q Consensus 359 ~~~s----~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~--------------------------~~~~~v~~~~~s~~~~ 407 (762)
++|+ +++.+|++++.|+.|++||+.+++... +. .+...|.+++|+ +++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~ 341 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK 341 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence 9665 568899999999999999999887532 11 145568899999 789
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
+|++++.|+.|++||+.+++....+.++.... ..+....++++..+++.. ++..........
T Consensus 342 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~--- 403 (437)
T 3gre_A 342 ILLTDEATSSIVMFSLNELSSSKAVISPSRFS-------DVFIPTQVTANLTMLLRK--------MKRTSTHSVDDS--- 403 (437)
T ss_dssp EEEEEGGGTEEEEEETTCGGGCEEEECC--CC-------CEEEEEEEETTEEEEEEE--------CC-------------
T ss_pred EEEecCCCCeEEEEECCCcccceEEecccccC-------ceEEEEEeecceEEEEEe--------cccccccccCcc---
Confidence 99999999999999999999888888765322 455666677665554443 222222211111
Q ss_pred cccccCCCCcceeEEEEEEecC--CCeEEEEeeeccccCCCceeEEEEEE
Q 040987 488 ERNHQPGDDVTVVVTLVALSQD--GSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~--g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
.. |...|.+++|+++ +.+|++++ .||.|++|+
T Consensus 404 -~~------h~~~I~~i~~~~~~~~~~l~s~~---------~dG~I~iw~ 437 (437)
T 3gre_A 404 -LY------HHDIINSISTCEVDETPLLVACD---------NSGLIGIFQ 437 (437)
T ss_dssp ----------CCCEEEEEEEESSSSEEEEEEE---------TTSCEEEEC
T ss_pred -cc------cccceeeEeeeccCCceEEEEEc---------CCceEEEeC
Confidence 11 2778999999998 77999999 899999995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-36 Score=313.63 Aligned_cols=370 Identities=14% Similarity=0.137 Sum_probs=253.6
Q ss_pred CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccC
Q 040987 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 255 ~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
+..+++|++...+.. ....+|.+.|++++|+| ++++|++|+.||.|++||+.+++...........
T Consensus 22 ~~~~~v~~~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-------- 88 (408)
T 4a11_B 22 ESTRRVLGLELNKDR-----DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVC-------- 88 (408)
T ss_dssp HHHHHHHTEEECTTE-----EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEE--------
T ss_pred cCcceeeccccCcce-----eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccc--------
Confidence 345667776666544 66778999999999999 9999999999999999999776432211000000
Q ss_pred CCCcccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC---CCeE
Q 040987 334 RPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD---PSLS 409 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~---~~~l 409 (762)
........+|...|.+++|+| ++++|++++.|+.|++||+.+++......+...+.++.+++. +.++
T Consensus 89 ---------~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (408)
T 4a11_B 89 ---------SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLV 159 (408)
T ss_dssp ---------EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEE
T ss_pred ---------cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEE
Confidence 000011235999999999999 778999999999999999999998777778889999999884 4599
Q ss_pred EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCcee-eEEee
Q 040987 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGIS-EVQVC 487 (762)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~-~~~~~ 487 (762)
++++.++.|++||+.+++.+..+.+|. ..|.+++|+|+++ ++++++.||.|++||++++.... .+...
T Consensus 160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~ 229 (408)
T 4a11_B 160 AVGTRGPKVQLCDLKSGSCSHILQGHR----------QEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQH 229 (408)
T ss_dssp EEEESSSSEEEEESSSSCCCEEECCCC----------SCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTT
T ss_pred EEEcCCCeEEEEeCCCcceeeeecCCC----------CcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccc
Confidence 999999999999999999888888876 7899999999998 58899999999999998765322 21110
Q ss_pred c-----ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 488 E-----RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 488 ~-----~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
. ........|...|.+++|+|++++|++++ .|+.|++||+.+++............. ...+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (408)
T 4a11_B 230 NGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG---------TDNRMRLWNSSNGENTLVNYGKVCNNS-KKGLKFTV 299 (408)
T ss_dssp TTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE---------TTSCEEEEETTTCCBCCCCCCCCCCCC-SSCCCCEE
T ss_pred ccccceeeccccccccCceeEEEEcCCCCEEEEec---------CCCeEEEEECCCCccceeccccccccc-cccceeEE
Confidence 0 00011133478899999999999999999 889999999998876544322111111 22233333
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
....+..+++++.++.|++||+.+++....+ ..|...|++++|+|++++|++++ ||.|++||+.+++.
T Consensus 300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~ 368 (408)
T 4a11_B 300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITML-----------KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP 368 (408)
T ss_dssp CCSSSSCEEEEEETTEEEEEETTTCCEEEEE-----------CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred ecCCCceEEEEecCCEEEEEECcCCcceeee-----------ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence 3344566777788999999999988766554 46889999999999999999998 99999999999988
Q ss_pred EEEeccccCceeEEEEeC-CCCEEEEEEcCCCCeEEEEECCC
Q 040987 642 VAVIGETLTPIMNMSFVG-SSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.....+.. ...+.+ +...+.+.+.|+. +++|+...
T Consensus 369 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~W~~~~ 405 (408)
T 4a11_B 369 VPDDDETTT---KSQLNPAFEDAWSSSDEEGG--TSAWSHPQ 405 (408)
T ss_dssp ------------------------------------------
T ss_pred cCCCCceEe---ccccccccceeecccCccCc--eeecCCcc
Confidence 766543322 233344 3344556667777 99998653
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=301.67 Aligned_cols=298 Identities=11% Similarity=0.133 Sum_probs=247.6
Q ss_pred eeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 231 TLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
...|...|.+++|+|++++|+++ .++.|++||+.+++. .....+.+|...|.+++|+|++++|++++.||.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW---VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE---EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE---EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 44588999999999999999976 899999999998752 12256678999999999999999999999999999999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce--
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-- 387 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-- 387 (762)
+.+++... ...+..|...|.+++|+|++++|++++.|+.|++||++.+..
T Consensus 81 ~~~~~~~~----------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 81 LKGRTWKP----------------------------TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp EETTEEEE----------------------------EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred CCCCeeee----------------------------eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 97664221 234467889999999999999999999999999999998762
Q ss_pred ---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc------------------CCceEEEEEccCCCCCCCCCccc
Q 040987 388 ---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM------------------PSMEIIRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 388 ---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~------------------~~~~~~~~~~~~~~~~~~~~~~~ 446 (762)
.....|...+.+++|+|+++++++++.|+.|++||+ ..++.+..+.+|.
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 202 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---------- 202 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS----------
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC----------
Confidence 233567889999999999999999999999999995 4677888887766
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
..+.+++|+|++++|++++.|+.|++||+.+++.+..+... ...+.+++|+|++++++++
T Consensus 203 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~l~~~---------- 262 (372)
T 1k8k_C 203 GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE----------TLPLLAVTFITESSLVAAG---------- 262 (372)
T ss_dssp SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS----------SCCEEEEEEEETTEEEEEE----------
T ss_pred CeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC----------CCCeEEEEEecCCCEEEEE----------
Confidence 78999999999999999999999999999988877665432 5679999999999988877
Q ss_pred ceeEEEEEEecC--CCce----------------------------eEEE------EEeecCCCCCceEEEEEc-CCC--
Q 040987 527 SLVCLKFWVSGT--QNKE----------------------------FTLS------TIVYEPHRDAGISAVAFH-PNR-- 567 (762)
Q Consensus 527 ~d~~i~iwd~~~--~~~~----------------------------~~~~------~~~~~~h~~~~v~~~~~s-pd~-- 567 (762)
.|+.|++|++.. +... .... .....+| ...|++++|+ ++|
T Consensus 263 ~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~g~~ 341 (372)
T 1k8k_C 263 HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLH-KNSVSQISVLSGGKAK 341 (372)
T ss_dssp TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSS-SSCEEEEEEEESTTTS
T ss_pred eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccc-cCCcceeEEecCCCcc
Confidence 678999999988 3100 0000 1112488 8999999966 676
Q ss_pred -CeEEEEeCCCcEEEEEccccccc
Q 040987 568 -RAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 568 -~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++|++++.||.|++||+.+++..
T Consensus 342 ~~~l~s~~~Dg~i~~W~~~~~~~~ 365 (372)
T 1k8k_C 342 CSQFCTTGMDGGMSIWDVRSLESA 365 (372)
T ss_dssp CSEEEEEETTSEEEEEEHHHHHHH
T ss_pred eeeEEEecCCCceEEEEecChhHh
Confidence 99999999999999999876544
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=306.87 Aligned_cols=328 Identities=13% Similarity=0.156 Sum_probs=256.8
Q ss_pred eeeeccCcCeEEEEEcCC----CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceee-
Q 040987 275 KITLHHTKKLTVLAFHPT----QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW- 349 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~----~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 349 (762)
....+|...|.+++|+|+ ...+++++.++.|++|++.+++.... +...
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~---------------------------~~~~~ 64 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL---------------------------LQSYV 64 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE---------------------------EEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe---------------------------eeecc
Confidence 455689999999999984 45666777788999999976644321 1111
Q ss_pred -eccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEE
Q 040987 350 -HWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLK 422 (762)
Q Consensus 350 -~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d 422 (762)
..|...|.+++|+|+ +++|++++.|+.|++||+.+++... +..|...|.+++|+| ++++|++++.|+.|++||
T Consensus 65 ~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd 144 (366)
T 3k26_A 65 DADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWN 144 (366)
T ss_dssp CSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence 126678999999999 6799999999999999999988754 556889999999999 999999999999999999
Q ss_pred cCCceEEEEE---ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 423 MPSMEIIRSI---SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 423 ~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+.+++.+..+ .+|. ..|.+++|+|++++|++++.||.|++||+.+++....+..
T Consensus 145 ~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------- 201 (366)
T 3k26_A 145 IQTDTLVAIFGGVEGHR----------DEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE------------- 201 (366)
T ss_dssp TTTTEEEEEECSTTSCS----------SCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH-------------
T ss_pred eecCeEEEEeccccccc----------CceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccce-------------
Confidence 9999998888 4554 7899999999999999999999999999987654433211
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
.+.++|++..++... .......+ ....+| ...|.+++|+ ++++++++.|+.|
T Consensus 202 ---~~~~~~~~~~~~~~~---------~~~~~~~~-------------~~~~~~-~~~v~~~~~~--~~~l~~~~~d~~i 253 (366)
T 3k26_A 202 ---SYDYNPNKTNRPFIS---------QKIHFPDF-------------STRDIH-RNYVDCVRWL--GDLILSKSCENAI 253 (366)
T ss_dssp ---HHTCCGGGCSSCCCC---------EEECCCSE-------------EECSSC-SSCCCEEEEE--TTEEEEECSSSEE
T ss_pred ---eEEecCCCCcccccc---------eeeccCcc-------------ccccCC-cceEEEEEEc--CCEEEEEecCCEE
Confidence 335566666555543 11100000 112457 8899999998 7799999999999
Q ss_pred EEEEccccccccccc---CCceeeeeecccCCCCeEEEEEcCC--CcEEEEEc-CCeEEEEeCCCCe----EEEEeccc-
Q 040987 580 KVWICNDELQQKDLQ---SSGWSCHAVGSYKKKAMTAAAFSAD--GSVLAVAA-ETVITLWDPDRNV----LVAVIGET- 648 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~s~d--g~~la~~~-d~~i~iwd~~~~~----~~~~l~~~- 648 (762)
++||+.++....... ............|...|++++|+|+ +++|++++ ||.|++||+.+++ ....+.+|
T Consensus 254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 333 (366)
T 3k26_A 254 VCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHK 333 (366)
T ss_dssp EEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTT
T ss_pred EEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccc
Confidence 999998765422111 1122334455678889999999999 99999998 9999999999875 44577777
Q ss_pred -cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 649 -LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 649 -~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
...|.+++|+|++++|++++.||. |++||+.+
T Consensus 334 ~~~~v~~~~~s~~~~~l~s~~~dg~--i~iwd~~~ 366 (366)
T 3k26_A 334 CGAAIRQTSFSRDSSILIAVCDDAS--IWRWDRLR 366 (366)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSE--EEEEEC--
T ss_pred cCCceEEEEeCCCCCeEEEEeCCCE--EEEEEecC
Confidence 789999999999999999999998 99999863
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=304.03 Aligned_cols=286 Identities=16% Similarity=0.208 Sum_probs=239.1
Q ss_pred ccCCceeecCCCEEEEEeCCEEEEEEcccceEEeee--cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 75 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL--EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l--~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
... ++||+++ +||+|.|++|+|||+++|++++.+ .+|...|++|+|+|+| .+|++|+.|++|+|||+.+
T Consensus 108 ~~~-l~wS~~n-~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg-------~~lasgs~Dg~v~iWd~~~ 178 (420)
T 4gga_A 108 LNL-VDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-------NYLAVGTSSAEVQLWDVQQ 178 (420)
T ss_dssp CBC-EEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-------SEEEEEETTSCEEEEETTT
T ss_pred cee-EEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC-------CEEEEEECCCeEEEEEcCC
Confidence 454 9999864 899999999999999999988765 4678889999999999 7899999999999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
+++++.+..|
T Consensus 179 ~~~~~~~~~h---------------------------------------------------------------------- 188 (420)
T 4gga_A 179 QKRLRNMTSH---------------------------------------------------------------------- 188 (420)
T ss_dssp TEEEEEECCC----------------------------------------------------------------------
T ss_pred CcEEEEEeCC----------------------------------------------------------------------
Confidence 9887766543
Q ss_pred ccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
...+.++++ ++++|++ +.++.+.+||...... ....+.+|...+..+.|+|+++++++++.|+.+++|+..
T Consensus 189 --~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~----~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 189 --SARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp --SSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred --CCceEEEee--CCCEEEEEeCCCceeEeeecccce----eeEEecccccceeeeeecCCCCeeeeeeccccceEEeec
Confidence 334444444 5678875 4789999999887653 235567899999999999999999999999999999987
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEE--EecCCeEEEEecCCCcee
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYS--GGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s--~~~dg~i~~wd~~~~~~~ 388 (762)
.++... ..+.....|...|.+++|+|++. .+++ |+.|++|++||+.+++..
T Consensus 261 ~~~~~~--------------------------~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~ 314 (420)
T 4gga_A 261 PGEGGW--------------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 314 (420)
T ss_dssp CCSSCS--------------------------CCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE
T ss_pred cccccc--------------------------eeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc
Confidence 654221 23456778999999999999764 4554 457899999999999988
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
........+.++.|+++++.+++++ .|+.|++||+.+++++..+.+|. +.|.+++|+|||++|++++.
T Consensus 315 ~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~----------~~V~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 315 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECTTSSCEEEEET
T ss_pred eeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEec
Confidence 7777778899999999999988865 68999999999999999999987 78999999999999999999
Q ss_pred CceEEEEEcCCCCceee
Q 040987 467 NYCIHFYSLLDDRGISE 483 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~ 483 (762)
|++|++||+.......+
T Consensus 385 D~tvriWdv~~~~~~~~ 401 (420)
T 4gga_A 385 DETLRLWRCFELDPARR 401 (420)
T ss_dssp TTEEEEECCSCSSCC--
T ss_pred CCeEEEEECCCCCccch
Confidence 99999999977654433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=305.69 Aligned_cols=316 Identities=12% Similarity=0.138 Sum_probs=247.9
Q ss_pred eeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 273 MRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 273 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
....+.+|.+.|++++|+| ++|++++.||.|++|++.+++... .......+.+|
T Consensus 8 ~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~------------------------~~~~~~~~~~h 61 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN------------------------PKDKSYSHFVH 61 (397)
T ss_dssp EEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC------------------------GGGGEEEEECC
T ss_pred hhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc------------------------CCCcceEEecC
Confidence 3456779999999999998 799999999999999997664111 11245677899
Q ss_pred ccceeEEEEecC----C---CEEEEEecCCeEEEEecCCCc------eeccCCC-----CCCeEEEEeC----CCCCe-E
Q 040987 353 PSEVSVLIFSSD----G---AYLYSGGKEGVLVVWQLDTGK------KKFLPRI-----GSPLLYFTES----PDPSL-S 409 (762)
Q Consensus 353 ~~~v~~~~~s~~----g---~~l~s~~~dg~i~~wd~~~~~------~~~~~~~-----~~~v~~~~~s----~~~~~-l 409 (762)
...|.+++|+|+ + ++|++++.|+.|++||+.+++ ...+..+ ...|.+++|+ |++++ |
T Consensus 62 ~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 141 (397)
T 1sq9_A 62 KSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRL 141 (397)
T ss_dssp TTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEE
T ss_pred CCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEE
Confidence 999999999999 9 999999999999999999887 4455666 4899999999 99999 9
Q ss_pred EEEecCCcEEEEEcCC------ceEEE-----EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 410 SISCADNQVHLLKMPS------MEIIR-----SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 410 ~~~~~d~~i~i~d~~~------~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
++++.++.|++||+.+ ++.+. .+.+. ......+...+.+++|+|++ ++++++.|+.|++||+.++
T Consensus 142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 217 (397)
T 1sq9_A 142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT---VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL 217 (397)
T ss_dssp EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEE---ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT
T ss_pred EEEeCCCcEEEEeCCccccccccceeeccCcceeeee---eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC
Confidence 9999999999999988 55554 55320 00001123788999999999 9999999999999999988
Q ss_pred CceeeEEeecccccCCCCc---ceeEEEEEEecCCCeEEEEeeeccccCCCce---eEEEEEEecCCCceeEEEEEeecC
Q 040987 479 RGISEVQVCERNHQPGDDV---TVVVTLVALSQDGSLMSTVDIKLAEEGIGSL---VCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d---~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
+.+..+... ..| ...+.+++|+|++++|++++ .+ +.|++||+.+++....+ .+
T Consensus 218 ~~~~~~~~~-------~~h~~~~~~i~~i~~~~~~~~l~~~~---------~d~~~g~i~i~d~~~~~~~~~~-----~~ 276 (397)
T 1sq9_A 218 RPLYNFESQ-------HSMINNSNSIRSVKFSPQGSLLAIAH---------DSNSFGCITLYETEFGERIGSL-----SV 276 (397)
T ss_dssp EEEEEEECC-------C---CCCCCEEEEEECSSTTEEEEEE---------EETTEEEEEEEETTTCCEEEEE-----CB
T ss_pred ceeEEEecc-------ccccccCCccceEEECCCCCEEEEEe---------cCCCCceEEEEECCCCccccee-----cc
Confidence 766655431 012 45699999999999999998 78 99999999988776655 34
Q ss_pred -------------CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee-ee---------eecccCCC
Q 040987 553 -------------HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS-CH---------AVGSYKKK 609 (762)
Q Consensus 553 -------------h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~---------~~~~~~~~ 609 (762)
| ...|.+++|+|++++|++++.|+.|++||+.+++....+...... .+ .....|..
T Consensus 277 ~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 355 (397)
T 1sq9_A 277 PTHSSQASLGEFAH-SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEP 355 (397)
T ss_dssp C--------CCBSB-SSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred Cccccccccccccc-CCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCC
Confidence 7 889999999999999999999999999999988766554200000 00 00111388
Q ss_pred CeEEEEEcCCC----------cEEEEEc-CCeEEEEeCCCCe
Q 040987 610 AMTAAAFSADG----------SVLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 610 ~i~~~~~s~dg----------~~la~~~-d~~i~iwd~~~~~ 640 (762)
.|++++|+|+| ++|++++ ||.|++||+++|+
T Consensus 356 ~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 356 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 99999999998 7999998 9999999998764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=316.13 Aligned_cols=322 Identities=10% Similarity=-0.015 Sum_probs=250.6
Q ss_pred cCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccC
Q 040987 234 EMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFG 312 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~ 312 (762)
-..+|.+++|||||+++|++ .|++|+ |...++ ...+|...|.+++|+|+| .++.+.+|+.+.
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~--------~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK--------DINCNSKNLFHVKEFPLE-------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS--------CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc--------eecCCCccEEEEEECCCC-------CcceEEEEeCCC
Confidence 35789999999999999965 788898 644443 236899999999999999 466666665433
Q ss_pred CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC
Q 040987 313 DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~ 392 (762)
... ..+ .|...|.+++|+|||++|++++.||.|++||.++ ....+.
T Consensus 77 ~~~-------------------------------~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-~l~~l~- 122 (588)
T 2j04_A 77 NGL-------------------------------LNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-MLTNLD- 122 (588)
T ss_dssp SCS-------------------------------STT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-EEEECC-
T ss_pred ceE-------------------------------eec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-eeeecc-
Confidence 221 111 3578899999999999999999999999999654 222233
Q ss_pred CCC-----CeEEEEeCCCCCeEEEEecCCcEEEEEcCCce-------EEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 393 IGS-----PLLYFTESPDPSLSSISCADNQVHLLKMPSME-------IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 393 ~~~-----~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
+.. .+.+++|||||++|++++.||+|++||+.++. .+.++..+.. .|...|.+++|+|||
T Consensus 123 ~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~------gh~~~V~sVawSPdg-- 194 (588)
T 2j04_A 123 SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDA------GSKDWVTHIVWYEDV-- 194 (588)
T ss_dssp CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCT------TCCCCEEEEEEETTE--
T ss_pred CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccc------cccccEEEEEEcCCc--
Confidence 443 59999999999999999999999999999875 3566633221 123799999999999
Q ss_pred EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 461 VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 461 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+++++.|+.+++||+.++............| ...|.+++|+ |+.||+++ ++.|++||+.+++
T Consensus 195 Laass~D~tVrlWd~~~~~~~~~~~tL~~~h------~~~V~svaFs--g~~LASa~----------~~tIkLWd~~~~~ 256 (588)
T 2j04_A 195 LVAALSNNSVFSMTVSASSHQPVSRMIQNAS------RRKITDLKIV--DYKVVLTC----------PGYVHKIDLKNYS 256 (588)
T ss_dssp EEEEETTCCEEEECCCSSSSCCCEEEEECCC------SSCCCCEEEE--TTEEEEEC----------SSEEEEEETTTTE
T ss_pred EEEEeCCCeEEEEECCCCccccceeeecccc------cCcEEEEEEE--CCEEEEEe----------CCeEEEEECCCCe
Confidence 8888999999999998876321011111122 5679999999 68888885 4899999999875
Q ss_pred ceeEEEEEeecCCCCCceEEEEE--cCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC
Q 040987 541 KEFTLSTIVYEPHRDAGISAVAF--HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA 618 (762)
Q Consensus 541 ~~~~~~~~~~~~h~~~~v~~~~~--spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 618 (762)
..... .+| ...|.+++| +||+..+++++.||+ ++|..+ .++++|
T Consensus 257 ~~~~~-----~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------------------~~~~sp 302 (588)
T 2j04_A 257 ISSLK-----TGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------------------ELHVTA 302 (588)
T ss_dssp EEEEE-----CSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS---------------------------SEEEEC
T ss_pred EEEEE-----cCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec---------------------------cEEECC
Confidence 53221 378 899999999 999999999999999 999874 156999
Q ss_pred CCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 619 DGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 619 dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
|+..+++. |+++++|+...+. +..+++ ...|.+++|||||+.+|+++.
T Consensus 303 d~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 303 DNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp CCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECTTSSEEEEEEE
T ss_pred CceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECCCCCEEEEEEe
Confidence 99888775 9999999987654 445554 667999999999999999864
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=312.43 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=229.5
Q ss_pred ccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCC-CCCeEEEEecCCcE
Q 040987 344 DLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESP-DPSLSSISCADNQV 418 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i 418 (762)
.......+|...|++++|+| ++++|++|+.||+|++||+.+++. ....+|...|.+++|+| ++++|++++.|+.|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 34456678999999999999 567999999999999999987764 24567889999999998 68999999999999
Q ss_pred EEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 419 HLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 419 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++||++++........+. +...+.+++|+|++++|++++.||.|++||+... .+..+ .. |.
T Consensus 190 ~iwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~----~~------h~ 250 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDT--------INIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNL----RM------HK 250 (435)
T ss_dssp EEEETTSCEEEEEECCSS--------CSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCS----BC------CS
T ss_pred EEeeccCCceeEEeccCC--------CCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEE----ec------cc
Confidence 999998765444333332 1246789999999999999999999999998653 22222 22 26
Q ss_pred eeEEEEEEecCCC-eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 499 VVVTLVALSQDGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 499 ~~v~~~~~sp~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
..|.+++|+|++. +|++++ .|+.|++||+.+.+....+.. ..+| ...|++++|+|+|++|++++.||
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s---------~d~~v~iwd~~~~~~~~~~~~--~~~h-~~~v~~~~~spdg~~l~s~~~D~ 318 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATAS---------VDQTVKIWDLRQVRGKASFLY--SLPH-RHPVNAACFSPDGARLLTTDQKS 318 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEE---------TTSBCCEEETTTCCSSSCCSB--CCBC-SSCEEECCBCTTSSEEEEEESSS
T ss_pred ceEEeeeecCCCceEEEEec---------CcceeeEEecccccccceEEE--eeec-cccccceeECCCCCeeEEEcCCC
Confidence 7899999999987 677777 889999999988765443321 2578 88999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-----------c--CCeEEEEeCCCCeEEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-----------A--ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-----------~--d~~i~iwd~~~~~~~~~ 644 (762)
.|++||+.++.....+. .+.........+....|+|++.+++++ + ++.|++||..+++++..
T Consensus 319 ~i~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~ 393 (435)
T 4e54_B 319 EIRVYSASQWDCPLGLI-----PHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQ 393 (435)
T ss_dssp CEEEEESSSSSSEEEEC-----CCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEE
T ss_pred EEEEEECCCCccceEEe-----cccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEE
Confidence 99999998876554332 000000011122234455555554443 2 35799999999999888
Q ss_pred ec-cccCceeEE-EEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 645 IG-ETLTPIMNM-SFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 645 l~-~~~~~v~~~-~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
+. +|...|.++ +|+|||++|++++ |+. |+|||+++++..
T Consensus 394 l~~~~~~~v~s~~~fspdg~~lasg~-d~~--i~iW~~~~gk~r 434 (435)
T 4e54_B 394 LYDPESSGISSLNEFNPMGDTLASAM-GYH--ILIWSQQEARTR 434 (435)
T ss_dssp ECCSSCCCCCCEEEECTTSSCEEEEC-SSE--EEECCCC-----
T ss_pred EeCCCCCcEEEEEEECCCCCEEEEEc-CCc--EEEEECCcCeee
Confidence 64 677888887 6999999999886 655 999999998754
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-36 Score=316.10 Aligned_cols=303 Identities=17% Similarity=0.163 Sum_probs=232.5
Q ss_pred eeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 275 KITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.....|...|++++|+| ++++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~----------------------------~~~~~~gH~ 164 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP----------------------------TFIKGIGAG 164 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC----------------------------EEECCCSSS
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce----------------------------eEEEccCCC
Confidence 44557888999999999 5679999999999999998765321 234567899
Q ss_pred cceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccC---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 354 SEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLP---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 354 ~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
+.|++++|+| ++++|++++.|++|++||++++...... .+...+.+++|+|++++|++++.||.|++||++. +.+
T Consensus 165 ~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~ 243 (435)
T 4e54_B 165 GSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KEL 243 (435)
T ss_dssp CCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBC
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-cee
Confidence 9999999998 6899999999999999999887654332 2334678899999999999999999999999874 455
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..+.+|. ..|.+++|+|++. ++++++.|+.|++||+++.+....+.. . ..|...|.+++|+|
T Consensus 244 ~~~~~h~----------~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~-~------~~h~~~v~~~~~sp 306 (435)
T 4e54_B 244 WNLRMHK----------KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLY-S------LPHRHPVNAACFSP 306 (435)
T ss_dssp CCSBCCS----------SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSB-C------CBCSSCEEECCBCT
T ss_pred EEEeccc----------ceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEE-e------eeccccccceeECC
Confidence 5666665 7899999999876 678899999999999988765443321 1 12367899999999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe------------CC
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS------------YG 576 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~------------~d 576 (762)
+|++|++++ .|+.|++||+.++.....+............+....|+|++.++++++ .+
T Consensus 307 dg~~l~s~~---------~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 307 DGARLLTTD---------QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp TSSEEEEEE---------SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC
T ss_pred CCCeeEEEc---------CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC
Confidence 999999999 899999999999887665532100000011233456777777776664 23
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEE-EEcCCCcEEEEEcCCeEEEEeCCCCeEE
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA-AFSADGSVLAVAAETVITLWDPDRNVLV 642 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~dg~~la~~~d~~i~iwd~~~~~~~ 642 (762)
+.|++||..+++....+ ...|...|.++ +|+|+|++||+|+|+.|+|||+++++..
T Consensus 378 ~~i~iwd~~~g~~~~~l----------~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQL----------YDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEARTR 434 (435)
T ss_dssp CCEEEECSSSCCEEEEE----------CCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC-----
T ss_pred CEEEEEECCCCcEEEEE----------eCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCeee
Confidence 57999999988766543 23577788887 6999999999999999999999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=289.09 Aligned_cols=281 Identities=16% Similarity=0.205 Sum_probs=236.8
Q ss_pred ccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeec--CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCC
Q 040987 75 VSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE--GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSV 152 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~ 152 (762)
..+ |+||+++ +||+|.|++|+|||+++|++++.+. +|...|++++|+|++ ++|++|+.|++|++||+.+
T Consensus 28 ~~~-l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~-------~~l~sgs~Dg~v~iw~~~~ 98 (318)
T 4ggc_A 28 LNL-VDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG-------NYLAVGTSSAEVQLWDVQQ 98 (318)
T ss_dssp CBC-EEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS-------SEEEEEETTSEEEEEETTT
T ss_pred ceE-EEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCC-------CEEEEEECCCcEEEeecCC
Confidence 455 9999987 8999999999999999999888764 688889999999999 7899999999999999999
Q ss_pred cceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeee
Q 040987 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTL 232 (762)
Q Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~ 232 (762)
+++++.+..|.
T Consensus 99 ~~~~~~~~~h~--------------------------------------------------------------------- 109 (318)
T 4ggc_A 99 QKRLRNMTSHS--------------------------------------------------------------------- 109 (318)
T ss_dssp TEEEEEEECCS---------------------------------------------------------------------
T ss_pred ceeEEEecCcc---------------------------------------------------------------------
Confidence 99888776543
Q ss_pred ccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 233 AEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
..+. ++++++++++++ .++.+.+|+...... ......+|...+..+.+++++++|++++.||.|++||+.
T Consensus 110 ---~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 110 ---ARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEH----HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp ---SCEE--EEEEETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred ---ceEE--EeecCCCEEEEEecCCceEeeecCCCce----eEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 2222 344556778754 689999999887653 335667899999999999999999999999999999997
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE---EEEecCCeEEEEecCCCcee
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL---YSGGKEGVLVVWQLDTGKKK 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l---~s~~~dg~i~~wd~~~~~~~ 388 (762)
+++... ........|...|.++.++|++..+ ++++.+++|++||.......
T Consensus 181 ~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~ 234 (318)
T 4ggc_A 181 PGEGGW--------------------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL 234 (318)
T ss_dssp CBTTBS--------------------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred CCcccc--------------------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence 664321 2234556688899999999976543 35677899999999999888
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 466 (762)
....+...+..+.|++++..+++++ .|+.|++||+.+++++..+.+|. +.|.+++|+|++++|++++.
T Consensus 235 ~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~----------~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 235 SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT----------SRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS----------SCEEEEEECTTSSCEEEEET
T ss_pred ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEcCCCCEEEEEec
Confidence 7778888999999999999888765 68999999999999999999987 78999999999999999999
Q ss_pred CceEEEEEcCCC
Q 040987 467 NYCIHFYSLLDD 478 (762)
Q Consensus 467 dg~i~i~d~~~~ 478 (762)
||+|++||+.+.
T Consensus 305 D~~v~iWd~~~~ 316 (318)
T 4ggc_A 305 DETLRLWRCFEL 316 (318)
T ss_dssp TTEEEEECCSCC
T ss_pred CCeEEEEECCCC
Confidence 999999999754
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=290.33 Aligned_cols=291 Identities=13% Similarity=0.174 Sum_probs=242.2
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+....+.+|.+.|.+++| +++++|++++.||.|++||+.+++.. ....+...+.+++|+|+++++++++.|+.+++|+
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 87 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP 87 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 456789999999999999 99999999999999999999888764 4566788999999999999999999999999999
Q ss_pred cCCc---eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 423 MPSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 423 ~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+... +....+.+|. ..+.+++| +++++++++.|+.|++|| .++....+.. | ..
T Consensus 88 ~~~~~~~~~~~~~~~~~----------~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~----~------~~ 143 (313)
T 3odt_A 88 LFATSGEDPLYTLIGHQ----------GNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA----H------NA 143 (313)
T ss_dssp TTCCTTSCC-CEECCCS----------SCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC----C------SS
T ss_pred eeecCCCCcccchhhcc----------cCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc----C------CC
Confidence 8763 5566666666 78899998 577999999999999999 3333333322 2 67
Q ss_pred eEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC-CCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 500 VVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP-HRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 500 ~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
.+.+++|.| +++++++++ .++.|++||. .+....+ .. | ...+.+++|+|++. +++++.|+
T Consensus 144 ~v~~~~~~~~~~~~l~~~~---------~d~~i~i~d~--~~~~~~~-----~~~~-~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 144 SVWDAKVVSFSENKFLTAS---------ADKTIKLWQN--DKVIKTF-----SGIH-NDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp CEEEEEEEETTTTEEEEEE---------TTSCEEEEET--TEEEEEE-----CSSC-SSCEEEEEEEETTE-EEEEETTS
T ss_pred ceeEEEEccCCCCEEEEEE---------CCCCEEEEec--CceEEEE-----eccC-cccEEEEEEcCCCe-EEEccCCC
Confidence 799999998 999999998 8899999992 2222222 34 6 88999999999998 89999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
.|++||+.+++....+ ..|...|++++|+|+++ |++++ |+.|++||+.+++++..+..|..+|.+++
T Consensus 206 ~i~i~d~~~~~~~~~~-----------~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~ 273 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTY-----------EGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVD 273 (313)
T ss_dssp EEEEEETTTCCEEEEE-----------ECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEE
T ss_pred eEEEEECCchhhhhhh-----------hcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEE
Confidence 9999999987765544 36789999999999995 66666 99999999999999999999999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
|+|+++ +++++.|+. |++||+.+++........
T Consensus 274 ~~~~~~-~~~~~~dg~--i~iw~~~~~~~~~~~~~~ 306 (313)
T 3odt_A 274 CMSNGD-IIVGSSDNL--VRIFSQEKSRWASEDEIK 306 (313)
T ss_dssp ECTTSC-EEEEETTSC--EEEEESCGGGCCC-----
T ss_pred EccCCC-EEEEeCCCc--EEEEeCCCCceeehhhhh
Confidence 999998 667999998 999999998877655443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=311.86 Aligned_cols=315 Identities=11% Similarity=0.059 Sum_probs=246.4
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
+.-...|.+|+|+||| .++||++.|++|+ |...+++
T Consensus 12 ~~~~~~v~sv~~SpDG-------~~iASas~D~TV~--d~~~~~~----------------------------------- 47 (588)
T 2j04_A 12 KEFEDWKNNLTWARDG-------TLYLTTFPDISIG--QPKYAKD----------------------------------- 47 (588)
T ss_dssp CCCSSSSCCEEECTTS-------CEEEECSSSEEEE--EECCCSC-----------------------------------
T ss_pred hHhhccEEEEEECCCC-------CEEEEEcCCceee--cccccce-----------------------------------
Confidence 3456889999999999 7899999999999 6333221
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhh
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAER 270 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~ 270 (762)
..+|...|.+++|+|+| .++.+.+|+.....
T Consensus 48 ----------------------------------------l~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~--- 78 (588)
T 2j04_A 48 ----------------------------------------INCNSKNLFHVKEFPLE------FENKLDFELAQQNG--- 78 (588)
T ss_dssp ----------------------------------------CSSBGGGTEEEEEECCC------CCCTTTTSCCCSSC---
T ss_pred ----------------------------------------ecCCCccEEEEEECCCC------CcceEEEEeCCCce---
Confidence 13578889999999999 44544455433222
Q ss_pred heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 271 VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
.....|...|.+++|||||++||+++.||.|++|+..+ ++..+.
T Consensus 79 ----~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------------------------------~l~~l~ 122 (588)
T 2j04_A 79 ----LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------------------------------MLTNLD 122 (588)
T ss_dssp ----SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--------------------------------EEEECC
T ss_pred ----EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------------------------------eeeecc
Confidence 12225688999999999999999999999999999533 123444
Q ss_pred cccc-----ceeEEEEecCCCEEEEEecCCeEEEEecCCCce--------ecc----CCCCCCeEEEEeCCCCCeEEEEe
Q 040987 351 WHPS-----EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK--------KFL----PRIGSPLLYFTESPDPSLSSISC 413 (762)
Q Consensus 351 ~h~~-----~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~--------~~~----~~~~~~v~~~~~s~~~~~l~~~~ 413 (762)
|.. .|.+++|||||++|++|+.||+|++||+.++.. ..+ .+|...|.+++|+||| +++++
T Consensus 123 -~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass 199 (588)
T 2j04_A 123 -SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAAL 199 (588)
T ss_dssp -CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEE
T ss_pred -CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEe
Confidence 554 599999999999999999999999999998852 222 5577899999999999 78888
Q ss_pred cCCcEEEEEcCCceE---EEEEc-cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEI---IRSIS-GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 489 (762)
.|+.+++||+.++.. .+++. +|. ..|.+++|+ ++.||+++ ++.|++||+.+++.... ..
T Consensus 200 ~D~tVrlWd~~~~~~~~~~~tL~~~h~----------~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~----~~ 262 (588)
T 2j04_A 200 SNNSVFSMTVSASSHQPVSRMIQNASR----------RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSL----KT 262 (588)
T ss_dssp TTCCEEEECCCSSSSCCCEEEEECCCS----------SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEE----EC
T ss_pred CCCeEEEEECCCCccccceeeeccccc----------CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEE----Ec
Confidence 999999999988763 34553 554 688999999 58888887 69999999987654211 11
Q ss_pred cccCCCCcceeEEEEEE--ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 490 NHQPGDDVTVVVTLVAL--SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
+| ...+..++| +||+..+++++ .+|+ ++|..+ .++++||+
T Consensus 263 gh------~~~V~~va~~~s~d~~~La~a~---------edG~-klw~~d----------------------~~~~spd~ 304 (588)
T 2j04_A 263 GS------LENFHIIPLNHEKESTILLMSN---------KTSY-KVLLED----------------------ELHVTADN 304 (588)
T ss_dssp SC------CSCCCEEEETTCSSCEEEEECS---------SCEE-EEEESS----------------------SEEEECCC
T ss_pred CC------CceEEEEEeeeCCCCCEEEEEc---------CCCC-EEEeec----------------------cEEECCCc
Confidence 23 677999999 99999999998 8899 999876 14589999
Q ss_pred CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 568 RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 568 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
..+++. |+++++|+...+... .++ +...|.+++|||||+.+|+++
T Consensus 305 ~l~a~~--d~~v~lW~~~g~~l~-~~~------------~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 305 IIAPYL--EKKFKKWSTIWNEFN-NYE------------TTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp SSHHHH--HHHHHHTTTTTTSSS-SSC------------CEEEEEEEEECTTSSEEEEEE
T ss_pred eEEEEc--CCEEEEEECCCCcee-eec------------cceEEEEEEECCCCCEEEEEE
Confidence 888875 899999998655422 321 356799999999999999886
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=290.05 Aligned_cols=253 Identities=18% Similarity=0.245 Sum_probs=208.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEccc--ceEEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTST--GLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~--~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+++ |++|+|||+++ ++++.++.+|.+.|++++|+++ + .+|+|++
T Consensus 3 ~~~~~h~~~V~~-~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g-------~~l~s~s 74 (297)
T 2pm7_B 3 VIANAHNEMIHD-AVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASCS 74 (297)
T ss_dssp EECCSCSSCEEE-EEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGC-------SEEEEEE
T ss_pred eeccCCcCceEE-EEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcC-------CEEEEEc
Confidence 356899999997 99999999999999 79999999974 4788999999999999999874 6 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|++|++||+.+++....
T Consensus 75 ~D~~v~iWd~~~~~~~~~-------------------------------------------------------------- 92 (297)
T 2pm7_B 75 YDGKVMIWKEENGRWSQI-------------------------------------------------------------- 92 (297)
T ss_dssp TTTEEEEEEBSSSCBCCC--------------------------------------------------------------
T ss_pred CCCEEEEEEcCCCceEEE--------------------------------------------------------------
Confidence 999999999987642110
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----- 292 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 292 (762)
.....|...|.+++|+|+ |++|++ +.|+.|++||+.++... ......+|...|.+++|+|+
T Consensus 93 --------~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 93 --------AVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCB---CCEEEECCSSCEEEEEECCCC----
T ss_pred --------EEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCce---eeeeeecccCccceEeecCCccccc
Confidence 122346778999999998 888874 57999999999876421 12456789999999999997
Q ss_pred --------CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 293 --------QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 293 --------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
+++|++|+.|+.|++||+.+++... .....+.+|...|.+++|+|+
T Consensus 162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~--------------------------~~~~~l~~H~~~V~~v~~sp~ 215 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSPT 215 (297)
T ss_dssp --------CCEEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECCC
T ss_pred ccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE--------------------------EEEEEecCCCCceEEEEECCC
Confidence 5799999999999999987653110 134578899999999999998
Q ss_pred C---CEEEEEecCCeEEEEecCCCce----ecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 365 G---AYLYSGGKEGVLVVWQLDTGKK----KFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 365 g---~~l~s~~~dg~i~~wd~~~~~~----~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
+ ++|++++.|++|++||+++... ..+ ..+...+.+++|+|++++|++++.|+.|++|+...
T Consensus 216 ~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 216 VLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 4 8999999999999999987531 122 45678899999999999999999999999999863
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-34 Score=287.38 Aligned_cols=297 Identities=15% Similarity=0.158 Sum_probs=246.4
Q ss_pred Ecccc-eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCc
Q 040987 100 STSTG-LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPA 178 (762)
Q Consensus 100 d~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (762)
|..++ ++++++.+|.+.|++++| |++ .+|++++.||.|++||+.+++....+.
T Consensus 3 d~~~~~~~~~~l~~h~~~v~~~~~-~~~-------~~l~s~~~dg~v~vw~~~~~~~~~~~~------------------ 56 (313)
T 3odt_A 3 DPFTGYQLSATLKGHDQDVRDVVA-VDD-------SKVASVSRDGTVRLWSKDDQWLGTVVY------------------ 56 (313)
T ss_dssp --CCCCEEEEEECCCSSCEEEEEE-EET-------TEEEEEETTSEEEEEEESSSEEEEEEE------------------
T ss_pred CccccHHHHHHhhCCCCCcEEEEe-cCC-------CEEEEEEcCCcEEEEECCCCEEEEEee------------------
Confidence 33344 788899999999999999 888 688999999999999998876655433
Q ss_pred ccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCe
Q 040987 179 QSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRK 257 (762)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~ 257 (762)
.|...|.+++|+|++++|++ +.++.
T Consensus 57 ------------------------------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 57 ------------------------------------------------------TGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp ------------------------------------------------------ECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ------------------------------------------------------cCCccEEEEEECCCCCEEEEecCCCe
Confidence 34667889999999999985 57999
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCc
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGV 337 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (762)
+++|++...... ........|...|.+++| ++++|++++.||.|++||. .
T Consensus 83 i~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~--~------------------------ 132 (313)
T 3odt_A 83 INGVPLFATSGE--DPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE--G------------------------ 132 (313)
T ss_dssp EEEEETTCCTTS--CC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET--T------------------------
T ss_pred EEEEEeeecCCC--CcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC--C------------------------
Confidence 999999876533 233556789999999999 5779999999999999992 2
Q ss_pred ccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 338 RDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
.....+..|...+.++.|.| +++++++++.|+.|++||...........+...+.+++|+|++. +++++.++
T Consensus 133 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg 205 (313)
T 3odt_A 133 ------SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDG 205 (313)
T ss_dssp ------EEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTS
T ss_pred ------cEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEEEEEEcCCCe-EEEccCCC
Confidence 23467778999999999998 89999999999999999954433334444888999999999998 88999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|++||+.+++.+..+.+|. ..+.+++|+|++ .+++++.||.|++||+.+++....+...
T Consensus 206 ~i~i~d~~~~~~~~~~~~~~----------~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~--------- 265 (313)
T 3odt_A 206 LIKLVDMHTGDVLRTYEGHE----------SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLP--------- 265 (313)
T ss_dssp EEEEEETTTCCEEEEEECCS----------SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECS---------
T ss_pred eEEEEECCchhhhhhhhcCC----------ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEecc---------
Confidence 99999999999999998877 789999999999 6899999999999999998876665432
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
...+.+++|+|++++ ++++ .|+.|++||+.+++....
T Consensus 266 -~~~i~~~~~~~~~~~-~~~~---------~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 266 -AISIWSVDCMSNGDI-IVGS---------SDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp -SSCEEEEEECTTSCE-EEEE---------TTSCEEEEESCGGGCCC-
T ss_pred -CceEEEEEEccCCCE-EEEe---------CCCcEEEEeCCCCceeeh
Confidence 557999999999985 4566 889999999998766543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=305.97 Aligned_cols=339 Identities=9% Similarity=0.069 Sum_probs=230.3
Q ss_pred eeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 276 ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
....+.+.|.+++|+|++++|++++.|+.|++||+.++.. +....+.+|...
T Consensus 6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~----------------------------~~~~~~~~h~~~ 57 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW----------------------------KHARTFSDHDKI 57 (377)
T ss_dssp EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE----------------------------EECCCBCCCSSC
T ss_pred eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce----------------------------EEEEEEecCCce
Confidence 3445677999999999999999999999999999976521 234677889999
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---E
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---I 428 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---~ 428 (762)
|.+++|+|++++|++++.|+.|++||+.+++ ...+..|...|.+++|+|++++|++++.|+.|++||+++++ .
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 137 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWV 137 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCC
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccccee
Confidence 9999999999999999999999999999887 34567788999999999999999999999999999999876 3
Q ss_pred EEEEcc-CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCce--------------eeEEeecccccC
Q 040987 429 IRSISG-IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGI--------------SEVQVCERNHQP 493 (762)
Q Consensus 429 ~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~--------------~~~~~~~~~~~~ 493 (762)
...+.. |. ..|.+++|+|++++|++++.|+.|++||+...... .......
T Consensus 138 ~~~~~~~h~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 202 (377)
T 3dwl_C 138 SKHLKRPLR----------STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----- 202 (377)
T ss_dssp CEEECSSCC----------SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-----
T ss_pred eeEeecccC----------CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-----
Confidence 566665 55 78999999999999999999999999999643311 1111111
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.|...|.+++|+|++++|++++ .|+.|++||+.+++...... ..+.+| ...|.+++|+|++++|+++
T Consensus 203 --~~~~~v~~~~~sp~~~~l~~~~---------~d~~i~iwd~~~~~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 203 --PSGGWVHAVGFSPSGNALAYAG---------HDSSVTIAYPSAPEQPPRAL-ITVKLS-QLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp --CCSSSEEEEEECTTSSCEEEEE---------TTTEEC-CEECSTTSCEEEC-CCEECS-SSCEEEEEEEETTEEEEEE
T ss_pred --cCCceEEEEEECCCCCEEEEEe---------CCCcEEEEECCCCCCcceee-EeecCC-CCceEEEEEcCCCCEEEEE
Confidence 2377899999999999999999 89999999999988722110 112578 8899999999999999998
Q ss_pred eCCCcEEEEEcccccccc--cccCCceeee----eecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 574 SYGGDFKVWICNDELQQK--DLQSSGWSCH----AVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 574 ~~dg~i~iwd~~~~~~~~--~~~~~~~~~~----~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
+.++.+ +|+........ .+....-... ............+.|++....+.... .+... .......
T Consensus 270 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~ 341 (377)
T 3dwl_C 270 YNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPT 341 (377)
T ss_dssp SSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSS
T ss_pred cCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCc
Confidence 866655 77765332111 1100000000 00000011244444544433332221 22211 1222334
Q ss_pred cccCceeEEEEeCCC-C---EEEEEEcCCCCeEEEEEC
Q 040987 647 ETLTPIMNMSFVGSS-E---YLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg-~---~l~s~~~d~~~~v~vwd~ 680 (762)
.|.+.|.++++.++. . .|+|++.||. |++||+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~--i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGR--VVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSE--EEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCc--EEEecC
Confidence 699999999976643 3 6999999998 999986
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=307.93 Aligned_cols=315 Identities=14% Similarity=0.128 Sum_probs=228.4
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc--eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCe
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG--LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGT 144 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~ 144 (762)
...|.+.|.+ ++|+|||++||+++ |+.|+|||+.++ +++.++.+|...|++++|+|++ .+|++++.|++
T Consensus 7 ~~~~~~~v~~-~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-------~~l~s~s~d~~ 78 (377)
T 3dwl_C 7 LHILPKPSYE-HAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS-------NRIVTCSQDRN 78 (377)
T ss_dssp EEECSSCCSC-CEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT-------CCEEEEETTSS
T ss_pred EecCCCcEEE-EEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC-------CEEEEEeCCCe
Confidence 4556788997 99999999999997 799999999998 7889999999999999999999 68899999999
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+++.....
T Consensus 79 v~vwd~~~~~~~~~~----------------------------------------------------------------- 93 (377)
T 3dwl_C 79 AYVYEKRPDGTWKQT----------------------------------------------------------------- 93 (377)
T ss_dssp EEEC------CCCCE-----------------------------------------------------------------
T ss_pred EEEEEcCCCCceeee-----------------------------------------------------------------
Confidence 999999876510000
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeecC
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
.....|...|.+++|+|++++|+++ .|+.|++||+.+++.. .....+.. |...|.+++|+|++++|++++.|
T Consensus 94 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 94 ----LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW--WVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp ----EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C--CCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred ----eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc--eeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 1234577889999999999998854 7899999999987631 12244455 99999999999999999999999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~ 382 (762)
|.|++||+............ ..-......+++..+ +|...|.+++|+|++++|++++.|+.|++||+
T Consensus 168 ~~i~iwd~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 168 RKAYVLSAYVRDVDAKPEAS------------VWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp SCEEEEEECCSSCC-CCCSC------------SSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred CEEEEEEEEecccCCCcccc------------ccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99999998644311100000 000000123445566 89999999999999999999999999999999
Q ss_pred CCCce-----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce--EEEEEc----------------------
Q 040987 383 DTGKK-----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME--IIRSIS---------------------- 433 (762)
Q Consensus 383 ~~~~~-----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~---------------------- 433 (762)
.+++. ..+..|...+.+++|+|++++|++++.++.+ +|+..... ....+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEG 313 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccc
Confidence 99875 3466788899999999999999988655555 77665211 000010
Q ss_pred ------------cCC------CCCCCCCcccCceeeEEEeCCC-C---EEEEeecCceEEEEEc
Q 040987 434 ------------GIK------LPCPLPEEYKGLCRDIAFNHDG-G---LVALRAENYCIHFYSL 475 (762)
Q Consensus 434 ------------~~~------~~~~~~~~~~~~v~~~~~s~~~-~---~l~~~~~dg~i~i~d~ 475 (762)
... ........|.+.|.++++.++. . .+++++.||.|++||+
T Consensus 314 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 314 PVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000 0111223477899999976643 3 6999999999999985
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=300.00 Aligned_cols=308 Identities=11% Similarity=0.103 Sum_probs=239.3
Q ss_pred eeeccCCCceEEEECCC---CC--EEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC----CcEEEEee
Q 040987 230 VTLAEMKEPQVITISSS---GK--YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----QRIVAAGD 300 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spd---g~--~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----~~~l~~~~ 300 (762)
...+|...|.+++|+|+ +. +++++.++.|++|++.+++............|...|.+++|+|+ +++|++|+
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 45579999999999984 33 55677889999999998775411111111236788999999999 77999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec-CCCEEEEEecCCeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS-DGAYLYSGGKEGVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~dg~i~~ 379 (762)
.||.|++||+.+++ .+..+.+|...|.+++|+| ++++|++++.|+.|++
T Consensus 93 ~dg~i~v~d~~~~~------------------------------~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~i 142 (366)
T 3k26_A 93 SRGIIRIINPITMQ------------------------------CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRL 142 (366)
T ss_dssp TTCEEEEECTTTCC------------------------------EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCCEEEEEEchhce------------------------------EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 99999999987664 3467788999999999999 9999999999999999
Q ss_pred EecCCCceecc----CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC------------------CC
Q 040987 380 WQLDTGKKKFL----PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI------------------KL 437 (762)
Q Consensus 380 wd~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~ 437 (762)
||+.+++.... ..+...|.+++|+|++++|++++.|+.|++||+.+++....+... ..
T Consensus 143 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 3k26_A 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFP 222 (366)
T ss_dssp EETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCC
T ss_pred EEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccC
Confidence 99999887543 578889999999999999999999999999999986554333220 00
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCcee----------eEEeecccccCCCCcceeEEEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGIS----------EVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.......|...|.+++|+ ++++++++.|+.|++||+.+..... ........| ...+.+++|+
T Consensus 223 ~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~s 294 (366)
T 3k26_A 223 DFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS------QCDIWYMRFS 294 (366)
T ss_dssp SEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS------SCCSSCCCCE
T ss_pred ccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc------CCcEEEEEEc
Confidence 000011144789999999 6799999999999999998765411 111111122 5668899999
Q ss_pred cC--CCeEEEEeeeccccCCCceeEEEEEEecCCCceeE-EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 508 QD--GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT-LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 508 p~--g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
|+ +++|++++ .|+.|++||+.+++.... ........| ...|++++|+|++++|++++.||.|++||+
T Consensus 295 ~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 295 MDFWQKMLALGN---------QVGKLYVWDLEVEDPHKAKCTTLTHHKC-GAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSSEEEEEC---------TTSCEEEEECCSSSGGGCEEEEECCTTC-CSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCCCcEEEEEe---------cCCcEEEEECCCCCCccccceEEccccc-CCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 99 99999998 889999999998875442 222212223 589999999999999999999999999998
Q ss_pred c
Q 040987 585 N 585 (762)
Q Consensus 585 ~ 585 (762)
.
T Consensus 365 ~ 365 (366)
T 3k26_A 365 L 365 (366)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=296.87 Aligned_cols=291 Identities=14% Similarity=0.159 Sum_probs=235.4
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecC-CccceeEEEEeCCCCcccceeeeEEeeecCCeE
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEG-HKAPVTTVIVVPASTPATKILSYCWTASLDGTI 145 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i 145 (762)
..+|...+.+ .+++++++.+++++ ++.|+|||+++++....+.. |...|++++|+|++ .+|++++.||.|
T Consensus 87 ~~~~~~~~~~-~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~-------~~l~~~~~dg~i 158 (401)
T 4aez_A 87 APGIIDDYYL-NLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDG-------SFLSVGLGNGLV 158 (401)
T ss_dssp CTTCCCCTTC-BCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS-------SEEEEEETTSCE
T ss_pred CCCCcCCceE-EEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC-------CEEEEECCCCeE
Confidence 3577766554 55555555555555 89999999999998888776 89999999999999 688999999999
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..+.
T Consensus 159 ~iwd~~~~~~~~~~~----------------------------------------------------------------- 173 (401)
T 4aez_A 159 DIYDVESQTKLRTMA----------------------------------------------------------------- 173 (401)
T ss_dssp EEEETTTCCEEEEEC-----------------------------------------------------------------
T ss_pred EEEECcCCeEEEEec-----------------------------------------------------------------
Confidence 999999888766543
Q ss_pred ccceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR 304 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 304 (762)
.|...|.+++| ++++|+ ++.++.|++||+..... ......+|...|.+++|+|++++|++++.||.
T Consensus 174 -------~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~ 240 (401)
T 4aez_A 174 -------GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANH----QIGTLQGHSSEVCGLAWRSDGLQLASGGNDNV 240 (401)
T ss_dssp -------CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSC----EEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred -------CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcc----eeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCe
Confidence 34566777788 456777 45799999999985442 23566789999999999999999999999999
Q ss_pred EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEEEEe--cCCeEEEEe
Q 040987 305 ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLYSGG--KEGVLVVWQ 381 (762)
Q Consensus 305 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~--~dg~i~~wd 381 (762)
|++||+.+++ +...+..|...|.+++|+|++. .+++++ .|+.|++||
T Consensus 241 v~iwd~~~~~------------------------------~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d 290 (401)
T 4aez_A 241 VQIWDARSSI------------------------------PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290 (401)
T ss_dssp EEEEETTCSS------------------------------EEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred EEEccCCCCC------------------------------ccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence 9999997653 3456778999999999999764 555654 699999999
Q ss_pred cCCCceeccCCCCCCeEEEEeCCCCCeEEEEe--cCCcEEEEEcCCceEEEE--EccCCCCCCCCCcccCceeeEEEeCC
Q 040987 382 LDTGKKKFLPRIGSPLLYFTESPDPSLSSISC--ADNQVHLLKMPSMEIIRS--ISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+.+++......+...+.+++|+|+++.+++++ .++.|++|++.+++.... +.+|. ..|.+++|+|+
T Consensus 291 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~----------~~v~~~~~s~d 360 (401)
T 4aez_A 291 AATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHD----------TRVLYSALSPD 360 (401)
T ss_dssp TTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCS----------SCCCEEEECTT
T ss_pred CCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCC----------CCEEEEEECCC
Confidence 99999877667788999999999999999954 899999999998665544 55665 78899999999
Q ss_pred CCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 458 GGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 458 ~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
+++|++++.||.|++|++.+++.+...
T Consensus 361 g~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 361 GRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp SSEEEEECTTSEEEEEECCC-------
T ss_pred CCEEEEEeCCCcEEEEECCCCcccccc
Confidence 999999999999999999988766543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=298.13 Aligned_cols=288 Identities=16% Similarity=0.218 Sum_probs=234.8
Q ss_pred eccccce--eEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 350 HWHPSEV--SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 350 ~~h~~~v--~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
.+|...+ .++.|+ +..+++++.|+.|++||+.+++.... ..+...|.+++|+|++++|++++.+|.|++||+.+
T Consensus 88 ~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 165 (401)
T 4aez_A 88 PGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES 165 (401)
T ss_dssp TTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcC
Confidence 3565554 445555 45688888999999999999987543 33678999999999999999999999999999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+..... ...+. .| ...|.++
T Consensus 166 ~~~~~~~~~~~----------~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~------~~~v~~~ 223 (401)
T 4aez_A 166 QTKLRTMAGHQ----------ARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQ----GH------SSEVCGL 223 (401)
T ss_dssp CCEEEEECCCS----------SCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEE----CC------SSCEEEE
T ss_pred CeEEEEecCCC----------CceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEc----CC------CCCeeEE
Confidence 99999998877 788999994 57999999999999999985433 33222 22 6789999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEe--CCCcEEE
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSS--YGGDFKV 581 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~--~dg~i~i 581 (762)
+|+|++++|++++ .|+.|++||+.+++....+ .+| ...|.+++|+|++. ++++++ .|+.|++
T Consensus 224 ~~~~~~~~l~s~~---------~d~~v~iwd~~~~~~~~~~-----~~~-~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i 288 (401)
T 4aez_A 224 AWRSDGLQLASGG---------NDNVVQIWDARSSIPKFTK-----TNH-NAAVKAVAWCPWQSNLLATGGGTMDKQIHF 288 (401)
T ss_dssp EECTTSSEEEEEE---------TTSCEEEEETTCSSEEEEE-----CCC-SSCCCEEEECTTSTTEEEEECCTTTCEEEE
T ss_pred EEcCCCCEEEEEe---------CCCeEEEccCCCCCccEEe-----cCC-cceEEEEEECCCCCCEEEEecCCCCCEEEE
Confidence 9999999999999 8899999999987766554 567 88999999999775 455554 6999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE--Ec-CCeEEEEeCCCCeEEE--EeccccCceeEEE
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV--AA-ETVITLWDPDRNVLVA--VIGETLTPIMNMS 656 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--~~-d~~i~iwd~~~~~~~~--~l~~~~~~v~~~~ 656 (762)
||+.+++....+. +...|.+++|+|+++++++ |+ |+.|++||+.+++... .+.+|...|.+++
T Consensus 289 ~d~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~ 356 (401)
T 4aez_A 289 WNAATGARVNTVD------------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSA 356 (401)
T ss_dssp EETTTCCEEEEEE------------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEE
T ss_pred EECCCCCEEEEEe------------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEE
Confidence 9999887665542 5678999999999999998 54 9999999999975544 4678999999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEE
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
|+|||++|++++.||. |++||+.+++.+....
T Consensus 357 ~s~dg~~l~s~~~dg~--i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 357 LSPDGRILSTAASDEN--LKFWRVYDGDHVKRPI 388 (401)
T ss_dssp ECTTSSEEEEECTTSE--EEEEECCC--------
T ss_pred ECCCCCEEEEEeCCCc--EEEEECCCCccccccc
Confidence 9999999999999998 9999999988776543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=292.81 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=203.7
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+++ |++|+|||+++++ ++.++.+|.+.|.+++|+|+ + .+|+|++
T Consensus 7 ~~~~~H~~~V~~-v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-------~~l~s~s 78 (316)
T 3bg1_A 7 TVDTSHEDMIHD-AQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-------NILASCS 78 (316)
T ss_dssp -------CCEEE-EEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-------SCEEEEE
T ss_pred eecccccCeEEE-eeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-------CEEEEEE
Confidence 456899999998 99999999999999 7999999998875 57889999999999999864 6 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.|++|++||+.+++....
T Consensus 79 ~D~~v~iWd~~~~~~~~~-------------------------------------------------------------- 96 (316)
T 3bg1_A 79 YDRKVIIWREENGTWEKS-------------------------------------------------------------- 96 (316)
T ss_dssp TTSCEEEECCSSSCCCEE--------------------------------------------------------------
T ss_pred CCCEEEEEECCCCcceEE--------------------------------------------------------------
Confidence 999999999987642111
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC-----
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT----- 292 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~----- 292 (762)
....+|...|.+++|+|+ +.+|+++ .|+.|++||+..+... .......+|...|.+++|+|+
T Consensus 97 --------~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 97 --------HEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW--EVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp --------EEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE--EECCBTTSSSSCBCCCEECCCCCC--
T ss_pred --------EEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc--ceeeeeccccCCcceEEEccccCCcc
Confidence 123357788999999998 7788855 7999999999876421 122455689999999999997
Q ss_pred ------------CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 293 ------------QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 293 ------------~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
+++|++|+.|+.|++||+...... .+...+.+|...|.+++
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~---------------------------~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW---------------------------KEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE---------------------------EEEECCBCCSSCEEEEE
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCcc---------------------------ceeeecccCCCceEEEE
Confidence 468999999999999998644211 13457789999999999
Q ss_pred EecCC----CEEEEEecCCeEEEEecCCCc-----eeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 361 FSSDG----AYLYSGGKEGVLVVWQLDTGK-----KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g----~~l~s~~~dg~i~~wd~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
|+|++ ++|++++.|++|++|++++.. ...+..+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99986 899999999999999998632 123445778999999999999999999999999999763
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=278.22 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=211.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|.+++|+|+|++||+|+.|+.|++|++.+.. .+++..+.+|.+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~----------------------------~~~~~~l~gH~~ 54 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET----------------------------HKLIDTLTGHEG 54 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC----------------------------BCCCEEECCCSS
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC----------------------------cEEEEEEccccC
Confidence 3566899999999999999999999999999999986431 124578899999
Q ss_pred ceeEEEEec--CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|++ ++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++.|+.|++||++++.
T Consensus 55 ~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 55 PVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred CeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 999999986 489999999999999999998753 235568889999999998 8999999999999999998753
Q ss_pred E--EEEEccCCCCCCCCCcccCceeeEEEeCC-------------CCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 I--IRSISGIKLPCPLPEEYKGLCRDIAFNHD-------------GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 ~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
. ...+.+|. ..|.+++|+|+ +++|++++.|+.|++||+.++...........+|
T Consensus 135 ~~~~~~~~~h~----------~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H- 203 (297)
T 2pm7_B 135 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 203 (297)
T ss_dssp CBCCEEEECCS----------SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred ceeeeeeeccc----------CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC-
Confidence 2 34556665 78999999997 5799999999999999998776443333333444
Q ss_pred CCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|++ ++|++++ .|++|++||+.+..............| ...|.+++|+|++++
T Consensus 204 -----~~~V~~v~~sp~~~~~~~las~s---------~D~~v~iWd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 268 (297)
T 2pm7_B 204 -----SDWVRDVAWSPTVLLRSYMASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 268 (297)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------TTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCC
T ss_pred -----CCceEEEEECCCCCCceEEEEEE---------CCCcEEEEEeCCCCCccceeeeecccC-CCcEEEEEECCCCCE
Confidence 7789999999995 8999999 899999999987543222111112456 789999999999999
Q ss_pred EEEEeCCCcEEEEEcc
Q 040987 570 AVSSSYGGDFKVWICN 585 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~ 585 (762)
||+++.|+.|++|+..
T Consensus 269 las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 269 LALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEEcCCCcEEEEEEC
Confidence 9999999999999986
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=299.42 Aligned_cols=337 Identities=13% Similarity=0.118 Sum_probs=236.3
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccce-----------EEeeecCCc------------cceeEEEEeC
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL-----------QISSLEGHK------------APVTTVIVVP 124 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~-----------~~~~l~~h~------------~~V~~v~~s~ 124 (762)
..|.+.|.+ ++|+|||++||+|+ ||.|+|||+.+++ ++..+.+|. ..|++++|+|
T Consensus 25 ~~~~~~V~~-v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIIST-VEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEE-EEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEE-EEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 567889997 99999999999999 7999999999887 588999998 8899999999
Q ss_pred CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCC
Q 040987 125 ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (762)
+++. .+|++++.|++|++||+.+++.......... .-.+.. .........+ .+.+
T Consensus 104 ~~~~-----~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~~~~~---~~~~----------- 159 (447)
T 3dw8_B 104 QKNA-----AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD-----PTTVTTLRVP---VFRP----------- 159 (447)
T ss_dssp CCSS-----SEEEEEECSSCEEEEEEEEEEEEEECCSCC-------------CCCCCSCCCC---EEEE-----------
T ss_pred CCCc-----ceEEEeCCCCeEEEEecccccCCcceecccCccccccC-----cccccceEec---cccc-----------
Confidence 9720 2677999999999999987664322100000 000000 0000000000 0000
Q ss_pred ccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee------ee
Q 040987 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK------IT 277 (762)
Q Consensus 204 ~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~------~~ 277 (762)
.. |.. ..........+|...|.+++|+|++++|+++.|+.|++||+...... ... ..
T Consensus 160 ----------~~---~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~---~~~~~~~~~~~ 222 (447)
T 3dw8_B 160 ----------MD---LMV-EASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWHLEITDRS---FNIVDIKPANM 222 (447)
T ss_dssp ----------EE---EEE-EEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEE---EEEEECCCSSG
T ss_pred ----------hh---eee-eccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCce---eeeeecccccc
Confidence 00 000 01111123467999999999999999999889999999999854321 111 24
Q ss_pred eccCcCeEEEEEcCCC-cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec-----
Q 040987 278 LHHTKKLTVLAFHPTQ-RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW----- 351 (762)
Q Consensus 278 ~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 351 (762)
.+|...|.+++|+|++ ++|++|+.||.|++||+.+++... .....+.+
T Consensus 223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------~~~~~~~~~~~~~ 276 (447)
T 3dw8_B 223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD--------------------------RHSKLFEEPEDPS 276 (447)
T ss_dssp GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC--------------------------TTCEEECCC----
T ss_pred cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc--------------------------ceeeEeccCCCcc
Confidence 5899999999999998 999999999999999997765311 01233344
Q ss_pred -------cccceeEEEEecCCCEEEEEecCCeEEEEecCC-Cceec-cCCCCC---------------CeEEEEeCCCCC
Q 040987 352 -------HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDT-GKKKF-LPRIGS---------------PLLYFTESPDPS 407 (762)
Q Consensus 352 -------h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~-~~~~~-~~~~~~---------------~v~~~~~s~~~~ 407 (762)
|...|.+++|+|+|++|++++. +.|++||+.+ ++... +..|.. .+..++|+|+++
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~ 355 (447)
T 3dw8_B 277 NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS 355 (447)
T ss_dssp -CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS
T ss_pred ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCC
Confidence 4459999999999999999998 9999999987 55532 223321 133499999999
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCC-----------------------CCcccCceeeEEEeCCCCEEEEe
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPL-----------------------PEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+|++++.|+.|++||+.+++.+ .+..+..+... ...+...+..++|+|++++|+++
T Consensus 356 ~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 356 VVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp EEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred EEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence 9999999999999999998776 33333221110 01223568899999999999999
Q ss_pred ecCceEEEEEcC
Q 040987 465 AENYCIHFYSLL 476 (762)
Q Consensus 465 ~~dg~i~i~d~~ 476 (762)
+.++ +++|..+
T Consensus 435 ~~~~-~~~~~~~ 445 (447)
T 3dw8_B 435 TTNN-LYIFQDK 445 (447)
T ss_dssp CSSC-EEEEECC
T ss_pred ecce-eeeeccc
Confidence 8876 7888643
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-33 Score=290.85 Aligned_cols=288 Identities=11% Similarity=0.189 Sum_probs=235.6
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+..++|+++ +.|++| .|++|++||..+++... ...+...|++++|+|+|++|++|+.|+.|++||+.+++.+..
T Consensus 107 y~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~ 184 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN 184 (420)
T ss_dssp TCBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred cceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE
Confidence 3567999976 467665 58999999999998753 345677899999999999999999999999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+.+|. ..+.++++ ++..+++++.|+.+++||.......... ...| ...+..+.++|+++
T Consensus 185 ~~~h~----------~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~~~~~~~~---~~~h------~~~~~~~~~~~~g~ 243 (420)
T 4gga_A 185 MTSHS----------ARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT---LSGH------SQEVCGLRWAPDGR 243 (420)
T ss_dssp ECCCS----------SCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE---EECC------SSCEEEEEECTTSS
T ss_pred EeCCC----------CceEEEee--CCCEEEEEeCCCceeEeeecccceeeEE---eccc------ccceeeeeecCCCC
Confidence 99887 66676665 5679999999999999999875443221 1222 67799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEE--EeCCCcEEEEEccccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVS--SSYGGDFKVWICNDEL 588 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~--~~~dg~i~iwd~~~~~ 588 (762)
++++++ .|+.+++|+..+++...... .....| ...|.+++|+|++. ++++ |+.|++|++||+.++.
T Consensus 244 ~l~s~~---------~D~~v~i~~~~~~~~~~~~~-~~~~~~-~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~ 312 (420)
T 4gga_A 244 HLASGG---------NDNLVNVWPSAPGEGGWVPL-QTFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA 312 (420)
T ss_dssp EEEEEE---------TTSCEEEEESSCCSSCSCCS-EEECCC-SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE
T ss_pred eeeeee---------ccccceEEeeccccccceee-eeeccc-CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc
Confidence 999999 89999999998876432211 113567 88999999999765 4444 3479999999999887
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
....+. +...+.++.|+|+++.+++++ |+.|+|||+.+++++..+.+|.+.|++++|+|||++|+
T Consensus 313 ~~~~~~------------~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~ 380 (420)
T 4gga_A 313 CLSAVD------------AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380 (420)
T ss_dssp EEEEEE------------CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEE
T ss_pred cceeec------------cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEE
Confidence 766552 456889999999999888753 89999999999999999999999999999999999999
Q ss_pred EEEcCCCCeEEEEECCCCceeeEEE
Q 040987 666 ATSWGSKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 666 s~~~d~~~~v~vwd~~~~~~~~~~~ 690 (762)
|++.|++ |++||+.+.......+
T Consensus 381 S~s~D~t--vriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 381 SAAADET--LRLWRCFELDPARRRE 403 (420)
T ss_dssp EEETTTE--EEEECCSCSSCC----
T ss_pred EEecCCe--EEEEECCCCCccchhh
Confidence 9999998 9999998766554443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=286.03 Aligned_cols=280 Identities=12% Similarity=0.119 Sum_probs=234.4
Q ss_pred eeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc----eeccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEE
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK----KKFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLK 422 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~----~~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d 422 (762)
...+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ......+...|.+++|+|+++ +|++++.++.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 445799999999999999999999999999999999888 556668889999999999999 999999999999999
Q ss_pred c-CCceEEEEEcc--CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC---------CCceeeEEeeccc
Q 040987 423 M-PSMEIIRSISG--IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD---------DRGISEVQVCERN 490 (762)
Q Consensus 423 ~-~~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~ 490 (762)
+ .+++. ..+.+ |. ..|.+++|+| ++++++++.|+.|++||+.+ ++.+..+.
T Consensus 86 ~~~~~~~-~~~~~~~~~----------~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----- 148 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEAN----------LGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK----- 148 (342)
T ss_dssp SSSSSSE-EECBSCCCC----------SCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-----
T ss_pred eccCCce-EeccccCCC----------CceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-----
Confidence 9 87755 55665 55 7899999999 99999999999999999976 44333221
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceEEEEEcC-CCC
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGISAVAFHP-NRR 568 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~ 568 (762)
+...+.+++|+|++ +++++ .++.|++||+.+ ........ ...| ...+.+++|+| +++
T Consensus 149 ------~~~~v~~~~~~~~~--l~~~~---------~d~~i~i~d~~~~~~~~~~~~---~~~~-~~~i~~i~~~~~~~~ 207 (342)
T 1yfq_A 149 ------VKNKIFTMDTNSSR--LIVGM---------NNSQVQWFRLPLCEDDNGTIE---ESGL-KYQIRDVALLPKEQE 207 (342)
T ss_dssp ------SCCCEEEEEECSSE--EEEEE---------STTEEEEEESSCCTTCCCEEE---ECSC-SSCEEEEEECSGGGC
T ss_pred ------eCCceEEEEecCCc--EEEEe---------CCCeEEEEECCccccccceee---ecCC-CCceeEEEECCCCCC
Confidence 26779999999988 77887 889999999998 55432222 2466 78999999999 999
Q ss_pred eEEEEeCCCcEEEEEcccc------cccccccCCceeeeee---cccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 569 AAVSSSYGGDFKVWICNDE------LQQKDLQSSGWSCHAV---GSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
++++++.||.+++|++... .....+. ++.. ...|...|.+++|+|++++|++++ ||.|++||+.+
T Consensus 208 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~ 282 (342)
T 1yfq_A 208 GYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR-----CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQT 282 (342)
T ss_dssp EEEEEETTSEEEEEECCTTCCSTTCTTCEEEE-----CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred EEEEEecCCcEEEEEEcCCCcccccccceeee-----cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCcc
Confidence 9999999999999999876 3322221 1100 112345999999999999999998 99999999999
Q ss_pred CeEEEEeccc-cCceeEEEEeCCCCEEEEEEcCCC
Q 040987 639 NVLVAVIGET-LTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 639 ~~~~~~l~~~-~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
++++..+.+| ..+|.+++ ||+++|++++.||.
T Consensus 283 ~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 283 RKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp TEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred HhHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence 9999999998 99999999 99999999999984
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-32 Score=274.90 Aligned_cols=281 Identities=11% Similarity=0.195 Sum_probs=231.6
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
...++||+++ .|++| .|++|++||+.+++... ...|...|.+++|+|+++++++|+.|+.|++|++++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4679999886 66655 58999999999998753 3467778999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.+|. ..+. ++++++..+++++.++.+++|+........... ..| ...+..+.+++++++
T Consensus 106 ~~h~----------~~~~--~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~ 164 (318)
T 4ggc_A 106 TSHS----------ARVG--SLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL---SGH------SQEVCGLRWAPDGRH 164 (318)
T ss_dssp ECCS----------SCEE--EEEEETTEEEEEETTSEEEEEETTSSSCEEEEE---ECC------SSCEEEEEECTTSSE
T ss_pred cCcc----------ceEE--EeecCCCEEEEEecCCceEeeecCCCceeEEEE---cCc------cCceEEEEEcCCCCE
Confidence 9887 4444 455667899999999999999988765432221 222 667999999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE---EEEeCCCcEEEEEcccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA---VSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l---~~~~~dg~i~iwd~~~~~~ 589 (762)
+++++ .|+.|++||+.+++....... ....+ .+.|.+++++|++..+ ++++.++.|++||......
T Consensus 165 l~s~~---------~d~~i~iwd~~~~~~~~~~~~-~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~ 233 (318)
T 4ggc_A 165 LASGG---------NDNLVNVWPSAPGEGGWVPLQ-TFTQH-QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC 233 (318)
T ss_dssp EEEEE---------TTSCEEEEESSCBTTBSCCSE-EECCC-CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE
T ss_pred EEEEe---------cCcceeEEECCCCccccccee-eeccc-CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc
Confidence 99999 899999999998765332211 12456 7789999999987644 3556789999999987765
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE--c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEE
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA--A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~--~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
.... .+...+..+.|+|+++.++++ + |+.|++||+.+++++..+.+|.+.|++++|+|||++|+|
T Consensus 234 ~~~~------------~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S 301 (318)
T 4ggc_A 234 LSAV------------DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVAS 301 (318)
T ss_dssp EEEE------------ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred cccc------------cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 5443 357789999999999988765 3 899999999999999999999999999999999999999
Q ss_pred EEcCCCCeEEEEECCCCc
Q 040987 667 TSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~ 684 (762)
++.|+. |++||+.+..
T Consensus 302 ~s~D~~--v~iWd~~~~d 317 (318)
T 4ggc_A 302 AAADET--LRLWRCFELD 317 (318)
T ss_dssp EETTTE--EEEECCSCCC
T ss_pred EecCCe--EEEEECCCCC
Confidence 999998 9999997653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-33 Score=294.79 Aligned_cols=320 Identities=13% Similarity=0.174 Sum_probs=232.5
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-----
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----- 353 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 353 (762)
.+.+.|.+++|+|+|++||+|+.||.|++|++.+++..... .....+....+.+|.
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~-------------------~~~~~~~~~~~~~h~~~~~~ 86 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSH-------------------SRGEYNVYSTFQSHEPEFDY 86 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CC-------------------CCCCEEEEEEEECCCCEEEG
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcc-------------------cccceeEecccccccccccc
Confidence 46789999999999999999999999999998765421100 001123456778888
Q ss_pred -------cceeEEEEecCC--CEEEEEecCCeEEEEecCCCce-------------------------------------
Q 040987 354 -------SEVSVLIFSSDG--AYLYSGGKEGVLVVWQLDTGKK------------------------------------- 387 (762)
Q Consensus 354 -------~~v~~~~~s~~g--~~l~s~~~dg~i~~wd~~~~~~------------------------------------- 387 (762)
..|.+++|+|++ .+|++++.|++|++||+.++..
T Consensus 87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (447)
T 3dw8_B 87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA 166 (447)
T ss_dssp GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence 889999999998 7999999999999999987443
Q ss_pred ----eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCC-CEE
Q 040987 388 ----KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG-GLV 461 (762)
Q Consensus 388 ----~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 461 (762)
.....|...|.+++|+|++++|+++ .|+.|++||+.+ ++.+..+.... .....|...|.+++|+|++ ++|
T Consensus 167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~l 242 (447)
T 3dw8_B 167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKP---ANMEELTEVITAAEFHPNSCNTF 242 (447)
T ss_dssp EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCC---SSGGGCCCCEEEEEECSSCTTEE
T ss_pred cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeeccc---ccccccCcceEEEEECCCCCcEE
Confidence 1235688899999999999999998 899999999994 44444331110 0111234789999999998 999
Q ss_pred EEeecCceEEEEEcCCCCc----eeeEEeecccc--cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 462 ALRAENYCIHFYSLLDDRG----ISEVQVCERNH--QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~----~~~~~~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
++++.||.|++||+.+++. ...+....... .....|...|.+++|+|+|++|++++ . +.|++||
T Consensus 243 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---------~-~~v~iwd 312 (447)
T 3dw8_B 243 VYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---------Y-LSVKVWD 312 (447)
T ss_dssp EEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---------S-SEEEEEE
T ss_pred EEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---------C-CeEEEEe
Confidence 9999999999999998875 33332211000 00000113799999999999999997 7 9999999
Q ss_pred ecC-CCceeEEEEEeecCCCCCc---------------eEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC---
Q 040987 536 SGT-QNKEFTLSTIVYEPHRDAG---------------ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS--- 596 (762)
Q Consensus 536 ~~~-~~~~~~~~~~~~~~h~~~~---------------v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--- 596 (762)
+.. ++....+ .+| ... +..++|+|++++|++++.||.|++||+.+++........
T Consensus 313 ~~~~~~~~~~~-----~~~-~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~ 386 (447)
T 3dw8_B 313 LNMENRPVETY-----QVH-EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENN 386 (447)
T ss_dssp TTCCSSCSCCE-----ESC-GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTC
T ss_pred CCCCcccccee-----ecc-ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeeccccc
Confidence 987 6655554 344 321 334999999999999999999999999987654321100
Q ss_pred ----cee--------------eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 597 ----GWS--------------CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 597 ----~~~--------------~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
... ...........|..++|+|++.+||+++.+.+++|..+
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 387 KPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp CTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred ccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 000 00001123567899999999999999996668888754
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=279.55 Aligned_cols=309 Identities=11% Similarity=0.088 Sum_probs=231.5
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce-----eccCCCCCCeEEEEeCC--CCCeEEEEecCCcEE
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-----KFLPRIGSPLLYFTESP--DPSLSSISCADNQVH 419 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~-----~~~~~~~~~v~~~~~s~--~~~~l~~~~~d~~i~ 419 (762)
..+.+|.+.|.+++|+|++++|++++.||.|++||+.++.. ..+..|...|.+++|+| ++++|++++.|+.|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 56788999999999999999999999999999999987642 23567889999999999 699999999999999
Q ss_pred EEEcCCc---------eEEEEEccCCCCCCCCCcccCceeeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEEeec
Q 040987 420 LLKMPSM---------EIIRSISGIKLPCPLPEEYKGLCRDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 420 i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
+||+.++ +....+..|. ..+.+++|+|+ ++++++++.|+.|++||+.+++.+..+....
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSK----------GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCS----------SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEE
T ss_pred EEecCCCcccccccCcceeeeecccC----------CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccc
Confidence 9999886 5677777776 78999999999 9999999999999999999887655443211
Q ss_pred cc---ccCCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE
Q 040987 489 RN---HQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 489 ~~---~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.. ......+...+.+++|+|+ +.++++++ .++.+.+|+...+.... +. .+.+| ...|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~-~~--~~~~h-~~~i~~~~ 221 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSA---------LEQAIIYQRGKDGKLHV-AA--KLPGH-KSLIRSIS 221 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEE---------TTEEEEEEECTTSCEEE-EE--ECCCC-CSCEEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEec---------CCCcEEEEccCCCceee-ee--ecCCC-CcceeEEE
Confidence 11 0111234677999999997 89999998 88888777776664322 21 24678 89999999
Q ss_pred EcCCC----CeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-----CCeEEE
Q 040987 563 FHPNR----RAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-----ETVITL 633 (762)
Q Consensus 563 ~spd~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-----d~~i~i 633 (762)
|+|++ ++|++++.||.|++||+..+....... .+.........+++...++.+. ...+.+
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASE-----------ESLTNSNMFDNSADVDMDAQGRSDSNTEEKAEL 290 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------------------
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccC-----------CcccceeccCCCcccccccccccccccceeeee
Confidence 99998 899999999999999998765443321 1223334444555555555442 456777
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEE
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
|+....+++..+.+|...|++++|+|++++|++++.||. |++||+.+++....+..
T Consensus 291 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~--v~iw~~~~~~~~~~~~~ 346 (351)
T 3f3f_A 291 QSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGK--VRLWKATYSNEFKCMSV 346 (351)
T ss_dssp CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSC--EEEEEECTTSCEEEEEE
T ss_pred cccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCc--EEEEecCcCcchhheee
Confidence 787788899999999999999999999999999999998 99999999887766554
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=288.45 Aligned_cols=257 Identities=19% Similarity=0.234 Sum_probs=216.4
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCccceeEEEEeCC--CCcccceeeeEEee
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTA 139 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~ 139 (762)
...+.+|.+.|.+ ++|+|||++||+++ |+.|+|||+. +++.+..+.+|...|++++|+++ + .+|+++
T Consensus 4 ~~~~~~h~~~v~~-~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-------~~l~s~ 75 (379)
T 3jrp_A 4 VVIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASC 75 (379)
T ss_dssp -CCEEECCCCEEE-EEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-------SEEEEE
T ss_pred cEEecCCcccEEE-EEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-------CEEEEe
Confidence 3567899999998 99999999999998 7999999998 77888999999999999999987 7 688999
Q ss_pred ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEE
Q 040987 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKC 219 (762)
Q Consensus 140 s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iw 219 (762)
+.|++|++||+.+++....
T Consensus 76 ~~dg~v~iwd~~~~~~~~~------------------------------------------------------------- 94 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQI------------------------------------------------------------- 94 (379)
T ss_dssp ETTSCEEEEEEETTEEEEE-------------------------------------------------------------
T ss_pred ccCCEEEEEEcCCCceeEe-------------------------------------------------------------
Confidence 9999999999988752211
Q ss_pred ecCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-----
Q 040987 220 NLTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP----- 291 (762)
Q Consensus 220 d~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----- 291 (762)
.....|...|.+++|+|+ +++|++ +.|+.|++||+...... .......|...|.+++|+|
T Consensus 95 ---------~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 95 ---------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp ---------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---CEEEEECCTTCEEEEEECCCC---
T ss_pred ---------eeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---eeEEecCCCCceEEEEEcCccccc
Confidence 122346778899999999 888885 57999999999987542 2245568999999999999
Q ss_pred --------CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 292 --------TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 292 --------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++++|++++.||.|++||+..+.... .....+.+|...|.+++|+|
T Consensus 163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------------------------~~~~~~~~h~~~v~~~~~sp 216 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSP 216 (379)
T ss_dssp -------CTTCEEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECC
T ss_pred cccccCCCCCCEEEEEeCCCeEEEEEecCCCcce--------------------------eeEEEEecccCcEeEEEECC
Confidence 69999999999999999997653221 23467788999999999999
Q ss_pred C---CCEEEEEecCCeEEEEecCCCc----ee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 364 D---GAYLYSGGKEGVLVVWQLDTGK----KK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 364 ~---g~~l~s~~~dg~i~~wd~~~~~----~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+ +++|++++.||.|++||+.++. .. ....+...+.+++|+|++++|++++.||.|++|++.....
T Consensus 217 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~ 290 (379)
T 3jrp_A 217 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGK 290 (379)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTE
T ss_pred CCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCc
Confidence 9 8999999999999999999874 12 2334778999999999999999999999999999985433
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=280.34 Aligned_cols=285 Identities=11% Similarity=0.091 Sum_probs=236.1
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
.+..+|.+.|.+++|+|++++|++++.||.|++|++.++... .....+.+|..
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~---------------------------~~~~~~~~~~~ 57 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN---------------------------VDLLQSLRYKH 57 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE---------------------------EEEEEEEECSS
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc---------------------------ccceeeeecCC
Confidence 445589999999999999999999999999999998765411 11245568999
Q ss_pred ceeEEEEecCCC-EEEEEecCCeEEEEec-CCCceeccCC--CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-----
Q 040987 355 EVSVLIFSSDGA-YLYSGGKEGVLVVWQL-DTGKKKFLPR--IGSPLLYFTESPDPSLSSISCADNQVHLLKMPS----- 425 (762)
Q Consensus 355 ~v~~~~~s~~g~-~l~s~~~dg~i~~wd~-~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~----- 425 (762)
.|.+++|+|+++ +|++++.|+.|++||+ .+++...+.. |...|.+++|+| ++++++++.|+.|++||+.+
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 999999999999 9999999999999999 9888877888 999999999999 99999999999999999886
Q ss_pred ----ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCccee
Q 040987 426 ----MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 426 ----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
++++..+. +...+.+++|+|++ +++++.++.|++||+.+ +......... .+ ...
T Consensus 137 ~~~~~~~~~~~~-----------~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~------~~~ 195 (342)
T 1yfq_A 137 IAVKNLNSNNTK-----------VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEES--GL------KYQ 195 (342)
T ss_dssp EEEEESCSSSSS-----------SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEEC--SC------SSC
T ss_pred ccccCCeeeEEe-----------eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeec--CC------CCc
Confidence 44433333 23789999999987 99999999999999987 5443222211 11 567
Q ss_pred EEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCC------CceeEEEEEeecCCC--------CCceEEEEEcC
Q 040987 501 VTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ------NKEFTLSTIVYEPHR--------DAGISAVAFHP 565 (762)
Q Consensus 501 v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~h~--------~~~v~~~~~sp 565 (762)
+.+++|+| +++++++++ .++.|++|+++.. +....+. .|. ...|.+++|+|
T Consensus 196 i~~i~~~~~~~~~l~~~~---------~dg~i~i~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~s~ 261 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSS---------IDGRVAVEFFDDQGDDYNSSKRFAFR-----CHRLNLKDTNLAYPVNSIEFSP 261 (342)
T ss_dssp EEEEEECSGGGCEEEEEE---------TTSEEEEEECCTTCCSTTCTTCEEEE-----CCCCCTTCCSSCCCEEEEEECT
T ss_pred eeEEEECCCCCCEEEEEe---------cCCcEEEEEEcCCCcccccccceeee-----cccccccccccceeEEEEEEcC
Confidence 99999999 999999999 8899999999887 5554443 340 34899999999
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccC-CCCeEEEEEcCCCcEEEEEc-CCe-EEEEe
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-KKAMTAAAFSADGSVLAVAA-ETV-ITLWD 635 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~dg~~la~~~-d~~-i~iwd 635 (762)
++++|++++.||.|++||+.+++....+ ..| ...|++++ |+|++|++++ ||. .+.|.
T Consensus 262 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~-----------~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 262 RHKFLYTAGSDGIISCWNLQTRKKIKNF-----------AKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTCCEEEEETTSCEEEEETTTTEEEEEC-----------CCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCCEEEEecCCceEEEEcCccHhHhhhh-----------hcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 9999999999999999999988766554 355 88999999 9999999998 998 55444
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=289.47 Aligned_cols=278 Identities=16% Similarity=0.272 Sum_probs=229.9
Q ss_pred ecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 69 RGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 69 ~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
.+|...|.+ +++|+++||+|+ ||.|+|||+.+++.+..+.+|.+.|++++| ++ .+|++|+.||+|++
T Consensus 130 ~~~~~~v~~---~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~-------~~l~sg~~dg~i~v 197 (435)
T 1p22_A 130 SETSKGVYC---LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-------RVIITGSSDSTVRV 197 (435)
T ss_dssp CSSCCCEEE---EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-------SEEEEEETTSCEEE
T ss_pred cCCCCcEEE---EEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CC-------CEEEEEcCCCeEEE
Confidence 345566765 555999999999 799999999999999999999999999999 67 68899999999999
Q ss_pred EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc
Q 040987 148 WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA 227 (762)
Q Consensus 148 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~ 227 (762)
||+.+++++..+..
T Consensus 198 wd~~~~~~~~~~~~------------------------------------------------------------------ 211 (435)
T 1p22_A 198 WDVNTGEMLNTLIH------------------------------------------------------------------ 211 (435)
T ss_dssp EESSSCCEEEEECC------------------------------------------------------------------
T ss_pred EECCCCcEEEEEcC------------------------------------------------------------------
Confidence 99999887765543
Q ss_pred ceeeeccCCCceEEEECCCCCEEE-EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 228 GGVTLAEMKEPQVITISSSGKYFG-IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spdg~~la-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
|...|.+++|++ .+++ ++.|+.|++||+.+++.. .......+|...|.+++| ++++|++|+.||.|+
T Consensus 212 ------h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~ 279 (435)
T 1p22_A 212 ------HCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIK 279 (435)
T ss_dssp ------CCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred ------CCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc--eeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEE
Confidence 455667777764 3565 567999999999887654 334567789999999999 788999999999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+||+.+++ .+..+.+|...|.++.| +++++++++.|+.|++||+++++
T Consensus 280 vwd~~~~~------------------------------~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 280 VWNTSTCE------------------------------FVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp EEETTTCC------------------------------EEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred EEECCcCc------------------------------EEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 99997764 34677889999999998 46799999999999999999988
Q ss_pred ee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce---------EEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 387 KK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME---------IIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 387 ~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
.. .+..|...+.+++| +++++++++.||.|++||+.++. .+..+.+|. +.|.+++|
T Consensus 328 ~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~-- 393 (435)
T 1p22_A 328 CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS----------GRVFRLQF-- 393 (435)
T ss_dssp EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS----------SCCCCEEE--
T ss_pred EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCC----------CCeEEEEe--
Confidence 75 46668889999998 78999999999999999998765 788888877 78899999
Q ss_pred CCCEEEEeecCceEEEEEcCCCCcee
Q 040987 457 DGGLVALRAENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~~~~ 482 (762)
++++|++++.||.|++||+.+.....
T Consensus 394 ~~~~l~s~s~Dg~i~iwd~~~~~~~~ 419 (435)
T 1p22_A 394 DEFQIVSSSHDDTILIWDFLNDPAAQ 419 (435)
T ss_dssp CSSCEEECCSSSEEEEEC--------
T ss_pred CCCEEEEEeCCCEEEEEECCCCCCcc
Confidence 78899999999999999998765433
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-32 Score=280.44 Aligned_cols=298 Identities=16% Similarity=0.168 Sum_probs=236.9
Q ss_pred ccceeeeccccceeEEEEecC---CCEEEEEecCCeEEEEecCC-Cce--eccCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 344 DLCTTWHWHPSEVSVLIFSSD---GAYLYSGGKEGVLVVWQLDT-GKK--KFLPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~~dg~i~~wd~~~-~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
+.+..+.+|...|.+++|+|+ |++|++++.||.|++||+.+ +.. ..+..|...|.+++|+|++++|++++.|+.
T Consensus 30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 455678899999999999999 69999999999999999997 444 356678899999999999999999999999
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE--eCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF--NHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
|++||+.+++.... ..|. ..|.+++| +|++++|++++.|+.|++||+.+++.+..+..
T Consensus 110 v~iwd~~~~~~~~~-~~~~----------~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--------- 169 (368)
T 3mmy_A 110 AKMWDLSSNQAIQI-AQHD----------APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--------- 169 (368)
T ss_dssp EEEEETTTTEEEEE-EECS----------SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC---------
T ss_pred EEEEEcCCCCceee-cccc----------CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec---------
Confidence 99999999887764 4454 78999999 89999999999999999999999887776654
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe----EE
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA----AV 571 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~----l~ 571 (762)
...+.++.+.+ ..+++++ .++.+.+|++........... ..+ ...+.++++.++... ++
T Consensus 170 --~~~~~~~~~~~--~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~ 232 (368)
T 3mmy_A 170 --PERCYCADVIY--PMAVVAT---------AERGLIVYQLENQPSEFRRIE---SPL-KHQHRCVAIFKDKQNKPTGFA 232 (368)
T ss_dssp --SSCEEEEEEET--TEEEEEE---------GGGCEEEEECSSSCEEEEECC---CSC-SSCEEEEEEEECTTSCEEEEE
T ss_pred --CCCceEEEecC--CeeEEEe---------CCCcEEEEEeccccchhhhcc---ccc-cCCCceEEEcccCCCCCCeEE
Confidence 23455666554 4677777 788999999987755433221 233 456677777766655 99
Q ss_pred EEeCCCcEEEEEcccccccccccCCceeeee------ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHA------VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 572 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
+++.||.|++||+.......... .+..+. ....|...|++++|+|++++|++++ ||.|++||+.+++++..
T Consensus 233 ~~~~dg~i~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~ 310 (368)
T 3mmy_A 233 LGSIEGRVAIHYINPPNPAKDNF--TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT 310 (368)
T ss_dssp EEETTSEEEEEESSCSCHHHHSE--EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE
T ss_pred EecCCCcEEEEecCCCCccccce--eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE
Confidence 99999999999998774311110 111110 0112223799999999999999998 99999999999999999
Q ss_pred eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|..+|.+++|+|||++|++++.|+. .+.|++-+
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~--~~~~~~~~ 346 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDW--SKGHEFYN 346 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCS--TTCGGGCC
T ss_pred ecCCCCCceEEEECCCCCeEEEEecccc--cccccccC
Confidence 9999999999999999999999999875 44444433
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=280.33 Aligned_cols=312 Identities=11% Similarity=0.152 Sum_probs=225.4
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccc----eEEeeecCCccceeEEEEeC--CCCcccceeeeEE
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTG----LQISSLEGHKAPVTTVIVVP--ASTPATKILSYCW 137 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~----~~~~~l~~h~~~V~~v~~s~--~~~~~~~l~~~l~ 137 (762)
+..+.+|.+.|.+ ++|+|+|++||+++ |+.|+|||+.++ +.+..+.+|...|++++|+| ++ .+|+
T Consensus 4 ~~~~~gH~~~v~~-~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~-------~~l~ 75 (351)
T 3f3f_A 4 QPFDSGHDDLVHD-VVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYG-------RIIA 75 (351)
T ss_dssp CCEECCCSSCEEE-EEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGC-------SEEE
T ss_pred cccCcccccceeE-EEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCC-------CEEE
Confidence 3456899999998 99999999999999 799999999877 57788899999999999999 57 6889
Q ss_pred eeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 138 TASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 138 s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
+++.|++|++||+.+++...... .
T Consensus 76 s~~~dg~v~vwd~~~~~~~~~~~---~----------------------------------------------------- 99 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEECSGR---R----------------------------------------------------- 99 (351)
T ss_dssp EEETTSCEEEEEECTTSCTTSSC---S-----------------------------------------------------
T ss_pred EEcCCCeEEEEecCCCccccccc---C-----------------------------------------------------
Confidence 99999999999998764210000 0
Q ss_pred EEecCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheee--------eeeeccCcCeEE
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMR--------KITLHHTKKLTV 286 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~ 286 (762)
.+.. .....|...|.+++|+|+ +++|++ +.|+.|++||+.+++....... .....|...+.+
T Consensus 100 ------~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (351)
T 3f3f_A 100 ------WNKL-CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFC 172 (351)
T ss_dssp ------EEEE-EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEE
T ss_pred ------ccee-eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeE
Confidence 0000 233457788999999999 998885 5799999999998775411100 011267889999
Q ss_pred EEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec
Q 040987 287 LAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS 363 (762)
Q Consensus 287 ~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 363 (762)
++|+|+ +.++++++.++.+.+|+...++. ..+..+.+|...|.+++|+|
T Consensus 173 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~h~~~i~~~~~~p 224 (351)
T 3f3f_A 173 LSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL----------------------------HVAAKLPGHKSLIRSISWAP 224 (351)
T ss_dssp EEECCCSSSCCEEEEEETTEEEEEEECTTSCE----------------------------EEEEECCCCCSCEEEEEECC
T ss_pred EEeccCCCCCcEEEEecCCCcEEEEccCCCce----------------------------eeeeecCCCCcceeEEEECC
Confidence 999997 89999999999998887655432 12467788999999999999
Q ss_pred CC----CEEEEEecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCCCCeEEEEe----cCCcEEEEEcCCceEEEEEcc
Q 040987 364 DG----AYLYSGGKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPDPSLSSISC----ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 364 ~g----~~l~s~~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~ 434 (762)
++ ++|++++.|+.|++||+.++..... ............++....+..+. ....+.+|+....+.+..+.+
T Consensus 225 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (351)
T 3f3f_A 225 SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD 304 (351)
T ss_dssp CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECT
T ss_pred CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec
Confidence 98 8999999999999999987655322 22222233333334333333332 334556666666778888888
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
|. ..|.+++|+|++++|++++.||.|++||+.+++....+.
T Consensus 305 h~----------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 305 HN----------GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp TS----------SCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred cc----------ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 77 789999999999999999999999999999887665544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-32 Score=284.34 Aligned_cols=260 Identities=13% Similarity=0.130 Sum_probs=220.2
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|...|.+++|+|++++|++|+.||.|++|++..... .....+.+|..
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~----------------------------~~~~~~~~h~~ 56 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------------------------KLIDTLTGHEG 56 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------------------------EEEEEECCCSS
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc----------------------------eeeeEecCCCC
Confidence 56789999999999999999999999999999999863321 23467889999
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+++ +++|++++.|+.|++||+.+++. .....+...+.+++|+|+ +.++++++.|+.|++||+.++.
T Consensus 57 ~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 136 (379)
T 3jrp_A 57 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 136 (379)
T ss_dssp CEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred cEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence 9999999977 89999999999999999999862 456668889999999999 9999999999999999998863
Q ss_pred --EEEEEccCCCCCCCCCcccCceeeEEEeC-------------CCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 --IIRSISGIKLPCPLPEEYKGLCRDIAFNH-------------DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....+..|. ..+.+++|+| ++.++++++.|+.|++||+.++............|
T Consensus 137 ~~~~~~~~~~~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h- 205 (379)
T 3jrp_A 137 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 205 (379)
T ss_dssp CCCEEEEECCT----------TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred ceeeEEecCCC----------CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc-
Confidence 334455555 7899999999 69999999999999999998877665554444444
Q ss_pred CCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|+ +++|++++ .|+.|++||+.++.............| ...|.+++|+|++++
T Consensus 206 -----~~~v~~~~~sp~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~ 270 (379)
T 3jrp_A 206 -----SDWVRDVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 270 (379)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------TTSCEEEEEESSTTSCCEEEESSSSCC-SSCEEEEEECSSSCC
T ss_pred -----cCcEeEEEECCCCCCCCeEEEEe---------CCCEEEEEeCCCCCccceeeeeccccC-CCcEEEEEEcCCCCE
Confidence 678999999999 89999999 889999999998765433333333457 889999999999999
Q ss_pred EEEEeCCCcEEEEEccccc
Q 040987 570 AVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~ 588 (762)
|++++.||.|++|++....
T Consensus 271 l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 271 LALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EEEEESSSSEEEEEEEETT
T ss_pred EEEecCCCcEEEEeCCCCC
Confidence 9999999999999998643
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=281.95 Aligned_cols=291 Identities=15% Similarity=0.233 Sum_probs=237.0
Q ss_pred eeeeccCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 275 KITLHHTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
..+.+|.+.|++++|+|+ |++|++|+.||.|++||+.+ +.. ....+.
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-----------------------------~~~~~~ 83 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-----------------------------IPKAQQ 83 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-----------------------------EEEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-----------------------------eEEEec
Confidence 567799999999999999 69999999999999999976 322 125778
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEe--CCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTE--SPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
+|...|.+++|+|++++|++++.|+.|++||+.+++......|...|.+++| ++++++|++++.|+.|++||+.+++.
T Consensus 84 ~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 84 MHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC
T ss_pred cccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE
Confidence 8999999999999999999999999999999999998888889999999999 99999999999999999999999988
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+..+..+. .+.++.+. ...+++++.++.+++|++.............. .....++++.+
T Consensus 164 ~~~~~~~~-----------~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 222 (368)
T 3mmy_A 164 MMVLQLPE-----------RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIESPL--------KHQHRCVAIFK 222 (368)
T ss_dssp SEEEECSS-----------CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSC--------SSCEEEEEEEE
T ss_pred EEEEecCC-----------CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhccccc--------cCCCceEEEcc
Confidence 88887653 44555555 45888899999999999987654332222111 34466777776
Q ss_pred CCCe----EEEEeeeccccCCCceeEEEEEEecCCCc---eeEEEEEeecCCCCC------------ceEEEEEcCCCCe
Q 040987 509 DGSL----MSTVDIKLAEEGIGSLVCLKFWVSGTQNK---EFTLSTIVYEPHRDA------------GISAVAFHPNRRA 569 (762)
Q Consensus 509 ~g~~----l~~~~~~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~h~~~------------~v~~~~~spd~~~ 569 (762)
+... +++++ .++.|++|++..... ...+ .+| .. .|++++|+|++++
T Consensus 223 ~~~~~~~~~~~~~---------~dg~i~i~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~ 287 (368)
T 3mmy_A 223 DKQNKPTGFALGS---------IEGRVAIHYINPPNPAKDNFTF-----KCH-RSNGTNTSAPQDIYAVNGIAFHPVHGT 287 (368)
T ss_dssp CTTSCEEEEEEEE---------TTSEEEEEESSCSCHHHHSEEE-----ECS-EEC----CCCEEECCEEEEEECTTTCC
T ss_pred cCCCCCCeEEEec---------CCCcEEEEecCCCCccccceee-----eee-ecccccccccccccceEEEEEecCCCE
Confidence 6655 88888 899999999998743 3333 344 33 6999999999999
Q ss_pred EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe---EEEEeCCCCeE
Q 040987 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV---ITLWDPDRNVL 641 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~---i~iwd~~~~~~ 641 (762)
|++++.||.|++||+.+++....+ ..|...|++++|+|||++|++++ |+. +.+|+.+....
T Consensus 288 l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~ 352 (368)
T 3mmy_A 288 LATVGSDGRFSFWDKDARTKLKTS-----------EQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNY 352 (368)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEC-----------CCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCE
T ss_pred EEEEccCCeEEEEECCCCcEEEEe-----------cCCCCCceEEEECCCCCeEEEEecccccccccccCCCccce
Confidence 999999999999999987766554 36789999999999999999997 654 44555554443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=273.32 Aligned_cols=255 Identities=12% Similarity=0.092 Sum_probs=199.9
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
...+.+|.+.|++++|+|+|++||+|+.|++|++||+.++.. ..+..+.+|.
T Consensus 6 ~~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~----------------------------~~~~~l~gH~ 57 (316)
T 3bg1_A 6 NTVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ----------------------------ILIADLRGHE 57 (316)
T ss_dssp --------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------EEEEEEECCS
T ss_pred eeecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------EEEEEEcCCC
Confidence 355678999999999999999999999999999999876532 1246788999
Q ss_pred cceeEEEEec--CCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCc
Q 040987 354 SEVSVLIFSS--DGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 354 ~~v~~~~~s~--~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~ 426 (762)
..|.+++|++ ++++|++++.|++|++||+++++. ..+..|...|.+++|+|+ +.+|++++.|+.|++||+..+
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 9999999985 489999999999999999998742 345678889999999998 789999999999999999875
Q ss_pred eEE---EEEccCCCCCCCCCcccCceeeEEEeCC-----------------CCEEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 427 EII---RSISGIKLPCPLPEEYKGLCRDIAFNHD-----------------GGLVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 427 ~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
... ..+.+|. ..+.+++|+|+ +++|++++.|+.|++||+......... .
T Consensus 138 ~~~~~~~~~~~h~----------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-~ 206 (316)
T 3bg1_A 138 GQWEVKKINNAHT----------IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEE-Q 206 (316)
T ss_dssp SCEEECCBTTSSS----------SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEE-E
T ss_pred CCcceeeeecccc----------CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcccee-e
Confidence 322 2334444 67889999997 478999999999999999754322221 1
Q ss_pred ecccccCCCCcceeEEEEEEecCC----CeEEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCCCCCceEEE
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDG----SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPHRDAGISAV 561 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g----~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h~~~~v~~~ 561 (762)
...+| ...|.+++|+|++ ++|++++ .|++|++|++.+.... ... .....| ...|.++
T Consensus 207 ~l~~h------~~~V~~v~~sp~~~~~~~~las~s---------~D~~v~iw~~~~~~~~~~~~--~~~~~~-~~~v~~v 268 (316)
T 3bg1_A 207 KLEAH------SDWVRDVAWAPSIGLPTSTIASCS---------QDGRVFIWTCDDASSNTWSP--KLLHKF-NDVVWHV 268 (316)
T ss_dssp CCBCC------SSCEEEEECCCCSSCSCCEEEEEE---------TTCEEEEEECSSTTCCCCBC--CEEEEC-SSCEEEE
T ss_pred ecccC------CCceEEEEecCCCCCCCceEEEEc---------CCCeEEEEEccCccccchhh--hhhhcC-CCcEEEE
Confidence 22333 7789999999987 7899999 8999999999863210 000 012457 7899999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
+|+|++++|++++.|++|++|+..
T Consensus 269 ~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 269 SWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999999999999999999999975
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=279.68 Aligned_cols=287 Identities=15% Similarity=0.102 Sum_probs=228.6
Q ss_pred cccccCCceeecCCCEEEEEeCCEEEEEEcccce---EEeeecC------------------------------------
Q 040987 72 RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGL---QISSLEG------------------------------------ 112 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~---~~~~l~~------------------------------------ 112 (762)
..++.+ ++|++||++|+++.++.|++||+++|+ .+..+..
T Consensus 4 ~~p~~~-v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQN-LLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCE-EEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEE-EEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 356776 999999999888889999999999998 6666653
Q ss_pred ------------------CccceeEEEEeCCCCcccceeee-EEeeecCCeEEEEeCC--CcceEEEEEeccceEEEeec
Q 040987 113 ------------------HKAPVTTVIVVPASTPATKILSY-CWTASLDGTIKYWDFS--VPELLKTIDVKFSIFSMVIP 171 (762)
Q Consensus 113 ------------------h~~~V~~v~~s~~~~~~~~l~~~-l~s~s~d~~i~vWd~~--~~~~~~~~~~~~~v~~~~~~ 171 (762)
|.+.|++++|+|++ .+ +++++.|++|++||+. +++++..+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-------~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~---------- 145 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDE-------SRLIACADSDKSLLVFDVDKTSKNVLKLRKR---------- 145 (450)
T ss_dssp -----------------CCCCCEEEEEECTTS-------SEEEEEEGGGTEEEEEEECSSSSSCEEEEEE----------
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCC-------CEEEEEECCCCeEEEEECcCCCCceeeeeec----------
Confidence 33379999999999 56 4899999999999998 7777665532
Q ss_pred ccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE
Q 040987 172 SLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG 251 (762)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la 251 (762)
..+...|.+++|+|++++|+
T Consensus 146 ------------------------------------------------------------~~~~~~v~~~~~sp~~~~l~ 165 (450)
T 2vdu_B 146 ------------------------------------------------------------FCFSKRPNAISIAEDDTTVI 165 (450)
T ss_dssp ------------------------------------------------------------EECSSCEEEEEECTTSSEEE
T ss_pred ------------------------------------------------------------ccCCCCceEEEEcCCCCEEE
Confidence 12456788999999999998
Q ss_pred EE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccc
Q 040987 252 IR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 252 ~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
++ .++.+++|++.+++.... ....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++...
T Consensus 166 ~~~~~g~v~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---------- 234 (450)
T 2vdu_B 166 IADKFGDVYSIDINSIPEEKF-TQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD---------- 234 (450)
T ss_dssp EEETTSEEEEEETTSCCCSSC-CCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----------
T ss_pred EEeCCCcEEEEecCCcccccc-cceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----------
Confidence 65 679999999988765300 22356789999999999999 9999999999999999997664322
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC----------------
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP---------------- 391 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~---------------- 391 (762)
..+.+|...|.+++|+ ++++|++++.|+.|++||+.+++.....
T Consensus 235 -------------------~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 235 -------------------KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp -------------------EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred -------------------eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 2256899999999999 9999999999999999999998864221
Q ss_pred ----------CCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEc--CCc---eEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 392 ----------RIGSPLLYFTESPDPSLSSISC-ADNQVHLLKM--PSM---EIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 392 ----------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~--~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.....+..++|+|+++++++++ .++.|++|++ .++ +.+..+..+ +.+.+++|+
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-----------~~v~~~~~~ 363 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-----------YNVISLSAH 363 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-----------SCEEEEEEE
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-----------CceEEEEec
Confidence 2235789999999999999998 8999999999 555 666666654 478999999
Q ss_pred CCCCEEEEeec------CceEEEEEcCCC
Q 040987 456 HDGGLVALRAE------NYCIHFYSLLDD 478 (762)
Q Consensus 456 ~~~~~l~~~~~------dg~i~i~d~~~~ 478 (762)
|++.++++++. +..|.+|.+...
T Consensus 364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 364 NDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred CCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 96544444333 445788876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-30 Score=269.20 Aligned_cols=341 Identities=14% Similarity=0.081 Sum_probs=252.8
Q ss_pred eeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEE-EEe-CCEEEEEEcccceEEeeecCCccceeEE
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLL-VCT-SNTVSIFSTSTGLQISSLEGHKAPVTTV 120 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la-~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v 120 (762)
..++++++.|+.|++||..+++......+...+.+ ++|+|||++|+ +++ ++.|++||+++++.+..+..|. .|.++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEEeecCCCcce-EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 46888999999999999998877765555556786 99999999874 554 6999999999999999998766 89999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccC
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT 200 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (762)
+|+|+++ .++++++.|++|++||+.+++.+..+..
T Consensus 80 ~~spdg~------~l~~~~~~~~~v~v~d~~~~~~~~~~~~--------------------------------------- 114 (391)
T 1l0q_A 80 AVSPDGK------QVYVTNMASSTLSVIDTTSNTVAGTVKT--------------------------------------- 114 (391)
T ss_dssp EECTTSS------EEEEEETTTTEEEEEETTTTEEEEEEEC---------------------------------------
T ss_pred EECCCCC------EEEEEECCCCEEEEEECCCCeEEEEEeC---------------------------------------
Confidence 9999994 2345666789999999999887655432
Q ss_pred cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeeeee
Q 040987 201 KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 201 ~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~ 278 (762)
...+.+++|+|+|++|+ ++ .++.|++||+.+++.. ....
T Consensus 115 ----------------------------------~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~-----~~~~ 155 (391)
T 1l0q_A 115 ----------------------------------GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-----NTVS 155 (391)
T ss_dssp ----------------------------------SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EEEE
T ss_pred ----------------------------------CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-----EEEe
Confidence 23457889999999884 44 5899999999988753 3333
Q ss_pred ccCcCeEEEEEcCCCcEE-EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQRIV-AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
. ...+.+++|+|++++| ++++.++.|++||+.+++.. ..+ .+...+.
T Consensus 156 ~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~------------------------------~~~-~~~~~~~ 203 (391)
T 1l0q_A 156 V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI------------------------------DTV-KVEAAPS 203 (391)
T ss_dssp C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------------------------EEE-ECSSEEE
T ss_pred c-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEE------------------------------EEE-ecCCCcc
Confidence 3 3567999999999887 56778899999999776432 222 2456789
Q ss_pred EEEEecCCCEEEEEe---cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEc
Q 040987 358 VLIFSSDGAYLYSGG---KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~---~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
+++|+|++++|++++ .++.|++||+.+++..........+.+++|+|+++++ ++++.++.|++||+.+++.+..+.
T Consensus 204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA 283 (391)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence 999999999999888 6899999999998876555555678999999999988 455779999999999999998887
Q ss_pred cCCCCCCCCCc----c-cCceeeEEEeCCC----------CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 434 GIKLPCPLPEE----Y-KGLCRDIAFNHDG----------GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 434 ~~~~~~~~~~~----~-~~~v~~~~~s~~~----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
.+..+...... . ........|+.+. ..+...+.+...++|++..+.... . .
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~-----~---------~ 349 (391)
T 1l0q_A 284 VGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK-----K---------Q 349 (391)
T ss_dssp CSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC-----S---------S
T ss_pred CCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC-----c---------C
Confidence 76543210000 0 0001111222221 235555678889999997764311 0 1
Q ss_pred eeEEEEEEecCCCeEEEEe
Q 040987 499 VVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~ 517 (762)
. ....|+++|.|.+...
T Consensus 350 ~--~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 350 N--PTHTYSETGIYTVRLT 366 (391)
T ss_dssp S--CEECCSSCEEEEEEEE
T ss_pred C--CeEEeCCCceEEEEEE
Confidence 1 2357889988877654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-31 Score=279.86 Aligned_cols=279 Identities=18% Similarity=0.293 Sum_probs=234.0
Q ss_pred eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
.+|...|.++.+ ++++|++|+.||.|++||+.+++.. .+..|...|.+++| +++++++++.||.|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 456677888776 7899999999999999999998875 46678889999998 789999999999999999999999
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
+..+.+|. ..|.+++|++ ..+++++.||.|++||+.++........ ..+| ...|.+++|
T Consensus 206 ~~~~~~h~----------~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~-~~~~------~~~v~~~~~-- 264 (435)
T 1p22_A 206 LNTLIHHC----------EAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRV-LVGH------RAAVNVVDF-- 264 (435)
T ss_dssp EEEECCCC----------SCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEE-ECCC------SSCEEEEEE--
T ss_pred EEEEcCCC----------CcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeE-ecCC------CCcEEEEEe--
Confidence 99998877 7889999874 5999999999999999998776532222 2222 677899988
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+++++++++ .|+.|++||+.+++....+ .+| ...|.++.| +++++++++.||.|++||+.+++
T Consensus 265 ~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~-----~~~-~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~ 327 (435)
T 1p22_A 265 DDKYIVSAS---------GDRTIKVWNTSTCEFVRTL-----NGH-KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGA 327 (435)
T ss_dssp ETTEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECC-SSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC
T ss_pred CCCEEEEEe---------CCCeEEEEECCcCcEEEEE-----cCC-CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCC
Confidence 788999999 8999999999998876665 467 889999999 46799999999999999999877
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe---------EEEEeccccCceeEEEEe
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV---------LVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~---------~~~~l~~~~~~v~~~~~s 658 (762)
....+ ..|...|.+++| ++++|++|+ ||.|++||+.+++ ++..+.+|.+.|.+++|
T Consensus 328 ~~~~~-----------~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 393 (435)
T 1p22_A 328 CLRVL-----------EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF- 393 (435)
T ss_dssp EEEEE-----------CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-
T ss_pred EEEEE-----------eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe-
Confidence 65544 468899999999 788999998 9999999998776 88899999999999999
Q ss_pred CCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 659 GSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 659 ~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
|+++|++++.||. |++||+.+.....
T Consensus 394 -~~~~l~s~s~Dg~--i~iwd~~~~~~~~ 419 (435)
T 1p22_A 394 -DEFQIVSSSHDDT--ILIWDFLNDPAAQ 419 (435)
T ss_dssp -CSSCEEECCSSSE--EEEEC--------
T ss_pred -CCCEEEEEeCCCE--EEEEECCCCCCcc
Confidence 7899999999998 9999998865543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=277.11 Aligned_cols=292 Identities=11% Similarity=0.126 Sum_probs=234.5
Q ss_pred CeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....++++|+...++ +++.||.|++|++....... .....+.+|...|.+++|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~--------------------------~~~~~~~~h~~~V~~~~~ 89 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD--------------------------KNVPLVCGHTAPVLDIAW 89 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC--------------------------TTCCCBCCCSSCEEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC--------------------------CCCceEecCCCCEEEEEe
Confidence 344688888876444 57889999999985542211 234567889999999999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCc-------e-eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEEEEEcCCceEEEE
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGK-------K-KFLPRIGSPLLYFTESPDP-SLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~-------~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
+| ++++|++++.||.|++||+.++. . ..+..|...|.+++|+|++ ++|++++.|+.|++||+.+++.+..
T Consensus 90 ~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 169 (402)
T 2aq5_A 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLT 169 (402)
T ss_dssp CTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred CCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEE
Confidence 99 99999999999999999999873 2 3466788999999999998 6999999999999999999999998
Q ss_pred E--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 432 I--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 432 ~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+ ..|. ..|.+++|+|++++|++++.|+.|++||+++++.+..+.. .|. ...+.+++|+|+
T Consensus 170 ~~~~~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~ 231 (402)
T 2aq5_A 170 LGPDVHP----------DTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR---PHE-----GTRPVHAVFVSE 231 (402)
T ss_dssp ECTTTCC----------SCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---SSC-----SSSCCEEEECST
T ss_pred EecCCCC----------CceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc---CCC-----CCcceEEEEcCC
Confidence 8 6666 7899999999999999999999999999998876655421 110 223789999999
Q ss_pred CCeEEEE---eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCCCcEEEEEcc
Q 040987 510 GSLMSTV---DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYGGDFKVWICN 585 (762)
Q Consensus 510 g~~l~~~---~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~dg~i~iwd~~ 585 (762)
+++|+++ + .++.|++||+.+......... ..| ...+.+++|+|++++|++ ++.|+.|++||+.
T Consensus 232 ~~~l~~g~~~~---------~d~~i~iwd~~~~~~~~~~~~---~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 232 GKILTTGFSRM---------SERQVALWDTKHLEEPLSLQE---LDT-SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp TEEEEEEECTT---------CCEEEEEEETTBCSSCSEEEE---CCC-CSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred CcEEEEeccCC---------CCceEEEEcCccccCCceEEe---ccC-CCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence 9999998 5 789999999998765333321 345 678999999999999875 4579999999999
Q ss_pred cccc-cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeE
Q 040987 586 DELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVL 641 (762)
Q Consensus 586 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~ 641 (762)
+++. ...+. ...+...|.+++|+|++.++++ +++.+++|++.++++
T Consensus 299 ~~~~~~~~l~---------~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 299 SEAPFLHYLS---------MFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHERKC 345 (402)
T ss_dssp SSTTCEEEEE---------EECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEETTEE
T ss_pred CCCcceEeec---------ccccCCcccceEEeccccccee-cceeEEEEEcCCCcE
Confidence 8763 22221 1125689999999999998764 477999999988754
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-31 Score=270.07 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=214.8
Q ss_pred EecCCccee-eeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSK-MIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~-~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|++...+.+ ...+|.+.|.+ ++|||||++||+|++..++|||+++++.+.....+ .+..++++++++ .++
T Consensus 4 ~s~~~~~~~~~~~~h~~~V~~-v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~------~~~ 74 (355)
T 3vu4_A 4 GSMITRNPIVPENHVSNPVTD-YEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMR--HLSKVRMLHRTN------YVA 74 (355)
T ss_dssp ---------------CCCCCE-EEECTTSSEEEEECSSEEEEEEETTEEEEEEEECS--CCCEEEECTTSS------EEE
T ss_pred ccccccCCccccccCCCceEE-EEECCCCCEEEEEcCCEEEEEecCCcceeeeeecC--CeEEEEEcCCCC------EEE
Confidence 444544443 45889999998 99999999999999877899999988877665433 588899999984 334
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.|++|++||+.+++++..+..+.++.++.+. .+. ++ ...++.|
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~--------~~~-----~~--------------------~~~~~~i 121 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLS--------REF-----IV--------------------VSYGDVI 121 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECSSCEEEEEEC--------SSE-----EE--------------------EEETTEE
T ss_pred EEECCccEEEEEECCCCcEEEEEECCCceEEEEEc--------CCE-----EE--------------------EEEcCEE
Confidence 67888999999999999999999877788888661 110 11 1257899
Q ss_pred EEEecCCc-cccceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCchhhh-----------heeeeeeeccC
Q 040987 217 CKCNLTES-RLAGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDVEAER-----------VVMRKITLHHT 281 (762)
Q Consensus 217 ~iwd~~~~-~~~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~~~~~-----------~~~~~~~~~~~ 281 (762)
++||+.++ +.+..... ....+++++ .+++++ .++.|++||+.++.... .+....+.+|.
T Consensus 122 ~i~d~~~~~~~~~~~~~----~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~ 195 (355)
T 3vu4_A 122 SVFKFGNPWKRITDDIR----FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT 195 (355)
T ss_dssp EEEESSTTCCBSSCCEE----EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCS
T ss_pred EEEECCCCceeeEEecc----CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC
Confidence 99999998 66533322 445567777 677643 68999999999865100 00135677999
Q ss_pred cCeEEEEEcCCCcEEEEeecCCe-EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-c-cccceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGR-ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-W-HPSEVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-h~~~v~~ 358 (762)
..|.+++|+|++++||+|+.||+ |++||+.+++. +..+. + |...|.+
T Consensus 196 ~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~------------------------------~~~~~~g~h~~~v~~ 245 (355)
T 3vu4_A 196 NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL------------------------------VREFRRGLDRADVVD 245 (355)
T ss_dssp SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE------------------------------EEEEECTTCCSCEEE
T ss_pred CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE------------------------------EEEEEcCCCCCcEEE
Confidence 99999999999999999999998 99999977643 35666 5 9999999
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceec---c---------------------CCCCCCeEEEEeCCCCCeEEEEec
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---L---------------------PRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~---------------------~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
++|+|+|++|++++.|++|++||++.+.... + .....+...++|++|++.+++++.
T Consensus 246 ~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~ 325 (355)
T 3vu4_A 246 MKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH 325 (355)
T ss_dssp EEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred EEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence 9999999999999999999999998654211 0 001123467899999999999999
Q ss_pred CCcEEEEEcCC
Q 040987 415 DNQVHLLKMPS 425 (762)
Q Consensus 415 d~~i~i~d~~~ 425 (762)
||.+++|++..
T Consensus 326 dg~~~~~~~~~ 336 (355)
T 3vu4_A 326 TRMIETFKVVF 336 (355)
T ss_dssp TTEEEEEEEEE
T ss_pred CCeEEEEEEEc
Confidence 99999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-30 Score=266.74 Aligned_cols=310 Identities=14% Similarity=0.116 Sum_probs=242.2
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEE-EEEe
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL-YSGG 372 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l-~s~~ 372 (762)
..+++++.|+.|++||+.+++.. ..+..|. .+.+++|+|+++++ ++++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~------------------------------~~~~~~~-~~~~~~~s~dg~~l~~~~~ 51 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVT------------------------------ATIPVGS-NPMGAVISPDGTKVYVANA 51 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEE------------------------------EEEECSS-SEEEEEECTTSSEEEEEEG
T ss_pred EEEEEcCCCCEEEEEECCCCeEE------------------------------EEeecCC-CcceEEECCCCCEEEEECC
Confidence 46778889999999999776433 4555554 58999999999987 5667
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.|+.|++||+.+++..........+.+++|+|+++++++++ .++.|++||+.+++.+..+..+ ..+.+
T Consensus 52 ~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-----------~~~~~ 120 (391)
T 1l0q_A 52 HSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-----------KSPLG 120 (391)
T ss_dssp GGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-----------SSEEE
T ss_pred CCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-----------CCcce
Confidence 89999999999998876666666999999999999886655 5699999999999988887754 36789
Q ss_pred EEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 452 IAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 452 ~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
++|+|+++++ ++++.++.|++||+.+++....+.. ...+..++|+|+++++++++. .++.
T Consensus 121 ~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~l~~~~~--------~~~~ 181 (391)
T 1l0q_A 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-----------GRSPKGIAVTPDGTKVYVANF--------DSMS 181 (391)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------CSSEEEEEECTTSSEEEEEET--------TTTE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec-----------CCCcceEEECCCCCEEEEEeC--------CCCE
Confidence 9999999987 6777899999999998876655443 234689999999998854431 7789
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe---CCCcEEEEEcccccccccccCCceeeeeecccC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS---YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 607 (762)
|++||+.+++....+. + ...+.+++|+|++++|++++ .++.|++||+.+++....++ .
T Consensus 182 v~~~d~~~~~~~~~~~------~-~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~------------~ 242 (391)
T 1l0q_A 182 ISVIDTVTNSVIDTVK------V-EAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP------------V 242 (391)
T ss_dssp EEEEETTTTEEEEEEE------C-SSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE------------C
T ss_pred EEEEECCCCeEEEEEe------c-CCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEe------------c
Confidence 9999999886554442 3 55789999999999999888 68999999999877655442 2
Q ss_pred CCCeEEEEEcCCCcEEE-EEc-CCeEEEEeCCCCeEEEEeccccCcee---EEE------------EeCCC---------
Q 040987 608 KKAMTAAAFSADGSVLA-VAA-ETVITLWDPDRNVLVAVIGETLTPIM---NMS------------FVGSS--------- 661 (762)
Q Consensus 608 ~~~i~~~~~s~dg~~la-~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~---~~~------------~s~dg--------- 661 (762)
...+.+++|+|||++|+ +++ |+.|++||+.+++++..+..|..+.. .+. |+.+.
T Consensus 243 ~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~ 322 (391)
T 1l0q_A 243 GPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSE 322 (391)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTC
T ss_pred CCCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccc
Confidence 34578999999999884 556 99999999999999988876655421 122 33221
Q ss_pred -CEEEEEEcCCCCeEEEEECCCCce
Q 040987 662 -EYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 662 -~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
..+...+.|.. +++||+.+|..
T Consensus 323 ~~~~~~~~~~~~--~~~W~~~~g~~ 345 (391)
T 1l0q_A 323 PVQFTDLSKDAT--EWKWDFGDGSS 345 (391)
T ss_dssp CEEEEECCBSCS--EEEEECSSSCE
T ss_pred eEEEEeCCCCce--EEEEECCCCcc
Confidence 33555566776 99999988764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-30 Score=273.81 Aligned_cols=298 Identities=13% Similarity=0.162 Sum_probs=237.6
Q ss_pred CceEEEECCCCCEEE--EEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCC
Q 040987 237 EPQVITISSSGKYFG--IRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 237 ~v~~~~~spdg~~la--~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
....++++|+...++ ++.+|.|+||++....... .....+.+|.+.|.+++|+| ++++|++|+.||.|++|++.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~-~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~ 114 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD-KNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDG 114 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC-TTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC-CCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCC
Confidence 345688998887665 3479999999996543210 11244668999999999999 9999999999999999999765
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEecCCCceec-c-
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKF-L- 390 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~-~- 390 (762)
.... ...+++..+.+|...|.+++|+|++ ++|++++.|+.|++||+.+++... +
T Consensus 115 ~~~~-----------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 171 (402)
T 2aq5_A 115 GLVL-----------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG 171 (402)
T ss_dssp CCSS-----------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred CCcc-----------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEe
Confidence 3211 0113457788999999999999998 699999999999999999988754 3
Q ss_pred -CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE-ccCCCCCCCCCcccCceeeEEEeCCCCEEEEe---e
Q 040987 391 -PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI-SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR---A 465 (762)
Q Consensus 391 -~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~ 465 (762)
..|...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..|.. ..+..++|+|++++|+++ +
T Consensus 172 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 172 PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG---------TRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS---------SSCCEEEECSTTEEEEEEECTT
T ss_pred cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC---------CcceEEEEcCCCcEEEEeccCC
Confidence 568889999999999999999999999999999999999888 66652 247899999999999999 7
Q ss_pred cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeE
Q 040987 466 ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFT 544 (762)
Q Consensus 466 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~ 544 (762)
.|+.|++||+.+.+........ .+ ...+.+++|+|++++|++++. .|+.|++||+.+++. ...
T Consensus 243 ~d~~i~iwd~~~~~~~~~~~~~--~~------~~~v~~~~~s~~~~~l~~~g~--------~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 243 SERQVALWDTKHLEEPLSLQEL--DT------SSGVLLPFFDPDTNIVYLCGK--------GDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp CCEEEEEEETTBCSSCSEEEEC--CC------CSSCEEEEEETTTTEEEEEET--------TCSCEEEEEECSSTTCEEE
T ss_pred CCceEEEEcCccccCCceEEec--cC------CCceeEEEEcCCCCEEEEEEc--------CCCeEEEEEecCCCcceEe
Confidence 9999999999887653222211 11 456899999999999975541 689999999998875 444
Q ss_pred EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 545 LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 545 ~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
+.. ..| ...|.+++|+|++.++++ .++.+++|++.++..
T Consensus 307 l~~---~~~-~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 307 LSM---FSS-KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EEE---ECC-SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred ecc---ccc-CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 433 225 689999999999998875 467999999987543
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.9e-29 Score=265.16 Aligned_cols=301 Identities=9% Similarity=0.015 Sum_probs=237.6
Q ss_pred ecCCC--eEEEEecCCc--ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEe-----eecCCcccee
Q 040987 49 ARSSG--LCRTAEYPAV--NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-----SLEGHKAPVT 118 (762)
Q Consensus 49 ~~~~g--~i~~~~~~~~--~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~-----~l~~h~~~V~ 118 (762)
+..++ .|..+|..++ +......+...+.+ ++|+|+++++++++ ++.|++||+++++.+. .+.+|.+.|.
T Consensus 95 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~ 173 (433)
T 3bws_A 95 KPEELNEKLIALDKEGITHRFISRFKTGFQPKS-VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVE 173 (433)
T ss_dssp SGGGGTTCEEECCBTTCSEEEEEEEECSSCBCC-CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEE
T ss_pred ccCCCceEEEEECCCCCcceEEEEEcCCCCceE-EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCcee
Confidence 33444 4444555433 33332333445665 99999777777776 5899999999999887 5568999999
Q ss_pred EEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccc
Q 040987 119 TVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRE 198 (762)
Q Consensus 119 ~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (762)
+++|+|++ .++++++.|++|++||+.+++.+..+.
T Consensus 174 ~~~~~~~~-------~~~~s~~~d~~v~~~d~~~~~~~~~~~-------------------------------------- 208 (433)
T 3bws_A 174 TISIPEHN-------ELWVSQMQANAVHVFDLKTLAYKATVD-------------------------------------- 208 (433)
T ss_dssp EEEEGGGT-------EEEEEEGGGTEEEEEETTTCCEEEEEE--------------------------------------
T ss_pred EEEEcCCC-------EEEEEECCCCEEEEEECCCceEEEEEc--------------------------------------
Confidence 99999999 788999999999999999887766543
Q ss_pred cCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeee
Q 040987 199 TTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKI 276 (762)
Q Consensus 199 ~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~ 276 (762)
.|...+.+++|+|++++++ ++ .++.|++||+.+++.. ..
T Consensus 209 ----------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~-----~~ 249 (433)
T 3bws_A 209 ----------------------------------LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEI-----RK 249 (433)
T ss_dssp ----------------------------------CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEE-----EE
T ss_pred ----------------------------------CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEE-----EE
Confidence 2345677889999999885 55 5899999999987653 33
Q ss_pred eeccCcCeEEEEEcCCCcEEEEee--------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcccccee
Q 040987 277 TLHHTKKLTVLAFHPTQRIVAAGD--------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348 (762)
Q Consensus 277 ~~~~~~~v~~~~~sp~~~~l~~~~--------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (762)
.. +...+.+++|+|++++|++++ .||.|++||+.+++...
T Consensus 250 ~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~------------------------------- 297 (433)
T 3bws_A 250 TD-KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID------------------------------- 297 (433)
T ss_dssp CC-CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE-------------------------------
T ss_pred ec-CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe-------------------------------
Confidence 32 345699999999999999887 48899999997664322
Q ss_pred eeccccceeEEEEecCCCEE-EEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-------------
Q 040987 349 WHWHPSEVSVLIFSSDGAYL-YSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA------------- 414 (762)
Q Consensus 349 ~~~h~~~v~~~~~s~~g~~l-~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------------- 414 (762)
...|...+.+++|+|+++.+ ++++.++.|++||+.+++......+...+.+++|+|+++++++++.
T Consensus 298 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g 377 (433)
T 3bws_A 298 TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKG 377 (433)
T ss_dssp EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCC
T ss_pred eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEEecCCCcccccccccc
Confidence 22455678899999999755 5668899999999999888766667788999999999999988876
Q ss_pred --CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCC
Q 040987 415 --DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLD 477 (762)
Q Consensus 415 --d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~ 477 (762)
||.|++||+.+++.+..+..+ ..+.+++|+|++++|++++. |+.|++|++..
T Consensus 378 ~~dg~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 378 LVLGKVYVIDTTTDTVKEFWEAG-----------NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp SSCCEEEEEETTTTEEEEEEECS-----------SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccceEEEEEECCCCcEEEEecCC-----------CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 469999999999998888763 46799999999999988875 99999999863
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-29 Score=268.14 Aligned_cols=285 Identities=12% Similarity=0.082 Sum_probs=230.5
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceec------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
..+.+++|+|++.++++++.++.|++||+.+++... ...+...+.+++|+++++++++++.++.|++||+.+++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 346689999987788888888999999999988753 33567789999999999999999999999999999999
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
.+..+..+. ..+.+++|+|+++++++++ .++.|++||+.+++....+.. ...+.+++|
T Consensus 203 ~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----------~~~~~~~~~ 261 (433)
T 3bws_A 203 YKATVDLTG----------KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----------IGLPRGLLL 261 (433)
T ss_dssp EEEEEECSS----------SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----------CSEEEEEEE
T ss_pred EEEEEcCCC----------CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----------CCCceEEEE
Confidence 988887665 6789999999999885554 789999999988765444322 345899999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE-EEEeCCCcEEEEEcc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA-VSSSYGGDFKVWICN 585 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l-~~~~~dg~i~iwd~~ 585 (762)
+|+|+++++++.....-. ..++.|++||+.+++....+ .| ...+.+++|+|+++.+ ++++.|+.|++||+.
T Consensus 262 ~~~g~~l~~~~~~~~~~~-~~dg~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~ 333 (433)
T 3bws_A 262 SKDGKELYIAQFSASNQE-SGGGRLGIYSMDKEKLIDTI------GP-PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLK 333 (433)
T ss_dssp CTTSSEEEEEEEESCTTC-SCCEEEEEEETTTTEEEEEE------EE-EECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred cCCCCEEEEEECCCCccc-cCCCeEEEEECCCCcEEeec------cC-CCCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence 999999998873200000 03789999999988655443 23 5578899999999755 566889999999999
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C---------------CeEEEEeCCCCeEEEEecccc
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E---------------TVITLWDPDRNVLVAVIGETL 649 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d---------------~~i~iwd~~~~~~~~~l~~~~ 649 (762)
+++....+. +...+.+++|+|+|++|++++ + |.|++||+.+++.+..+.. .
T Consensus 334 ~~~~~~~~~------------~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~ 400 (433)
T 3bws_A 334 EKKVQKSIP------------VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-G 400 (433)
T ss_dssp TTEEEEEEE------------CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-S
T ss_pred CCcEEEEec------------CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-C
Confidence 877655442 467789999999999888875 2 5999999999999988875 4
Q ss_pred CceeEEEEeCCCCEEEEEEc-CCCCeEEEEECCC
Q 040987 650 TPIMNMSFVGSSEYLVATSW-GSKPQLSVWNMSK 682 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~~~ 682 (762)
..+.+++|+|||++|++++. |+. |++|+++.
T Consensus 401 ~~~~~~~~s~dg~~l~~~~~~d~~--i~v~~~~~ 432 (433)
T 3bws_A 401 NQPTGLDVSPDNRYLVISDFLDHQ--IRVYRRDG 432 (433)
T ss_dssp SSEEEEEECTTSCEEEEEETTTTE--EEEEEETT
T ss_pred CCCceEEEcCCCCEEEEEECCCCe--EEEEEecC
Confidence 57899999999999998875 877 99999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.1e-32 Score=303.84 Aligned_cols=255 Identities=19% Similarity=0.231 Sum_probs=212.9
Q ss_pred eeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCccceeEEEEeCC--CCcccceeeeEEeee
Q 040987 66 KMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVTTVIVVPA--STPATKILSYCWTAS 140 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~~v~~s~~--~~~~~~l~~~l~s~s 140 (762)
..+.+|.+.|.+ ++|+|||++||+|+ ||.|+|||+. +++.+.++.+|.+.|++++|+|+ + .+|++|+
T Consensus 3 ~~l~gH~~~V~~-l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-------~~l~s~s 74 (753)
T 3jro_A 3 VIANAHNELIHD-AVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-------TILASCS 74 (753)
T ss_dssp -----CCCCEEE-ECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-------SEEEEEE
T ss_pred eecccCcceeEE-EEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-------CEEEEEe
Confidence 457899999998 99999999999999 7999999998 67888999999999999999998 7 6889999
Q ss_pred cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEe
Q 040987 141 LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCN 220 (762)
Q Consensus 141 ~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd 220 (762)
.||+|++||+.+++....
T Consensus 75 ~Dg~I~vwd~~~~~~~~~-------------------------------------------------------------- 92 (753)
T 3jro_A 75 YDGKVLIWKEENGRWSQI-------------------------------------------------------------- 92 (753)
T ss_dssp TTSCEEEEEEETTEEEEE--------------------------------------------------------------
T ss_pred CCCeEEEEECCCCccccc--------------------------------------------------------------
Confidence 999999999887652211
Q ss_pred cCCccccceeeeccCCCceEEEECCC--CCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC------
Q 040987 221 LTESRLAGGVTLAEMKEPQVITISSS--GKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP------ 291 (762)
Q Consensus 221 ~~~~~~~~~~~~~~~~~v~~~~~spd--g~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp------ 291 (762)
.....|...|.+++|+|+ ++++++ +.|+.|++||+.++... ......+|...|.+++|+|
T Consensus 93 --------~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~---~~~~~~~~~~~v~~l~~~p~~~~~~ 161 (753)
T 3jro_A 93 --------AVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---SPIIIDAHAIGVNSASWAPATIEED 161 (753)
T ss_dssp --------EEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCC---CCEEEECCSSCEEEEEECCCC----
T ss_pred --------ccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCc---ceeEeecCCCceEEEEecCcccccc
Confidence 123346788999999999 999885 47899999999987432 2245568999999999999
Q ss_pred -------CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 292 -------TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 292 -------~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
++++|++|+.||.|++||+.++.... .....+.+|...|.+++|+|+
T Consensus 162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~--------------------------~~~~~~~~h~~~V~~l~~sp~ 215 (753)
T 3jro_A 162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY--------------------------VLESTLEGHSDWVRDVAWSPT 215 (753)
T ss_dssp -----CGGGCCEEEEETTSCEEEEEEETTTTEE--------------------------EEEEEECCCSSCEEEEEECCC
T ss_pred cccccCCCCCEEEEEECCCeEEEEeccCCcccc--------------------------eeeeeecCCCCcEEEEEeccC
Confidence 58999999999999999997653211 234677889999999999999
Q ss_pred ---CCEEEEEecCCeEEEEecCCCce------eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 365 ---GAYLYSGGKEGVLVVWQLDTGKK------KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 365 ---g~~l~s~~~dg~i~~wd~~~~~~------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
+++|++++.||.|++||+.+++. .....+...+.+++|+|+|+++++++.||.|++|++.++.
T Consensus 216 ~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 216 VLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred CCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 89999999999999999998742 2344577889999999999999999999999999998643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=263.02 Aligned_cols=276 Identities=8% Similarity=0.011 Sum_probs=216.9
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEE
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLK 157 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~ 157 (762)
..+.+|+++||+|+ ||.|+|||+++++.+.++. ...|.++.|+|+ +++++.|++|++|+...
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----------~~s~s~D~~i~~w~~~~----- 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----------IISRGPCNRLLLLYPGN----- 104 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----------EEEECSTTEEEEEETTT-----
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----------eEEecCCCeEEEEEccC-----
Confidence 55678999999999 8999999999999988887 567888887774 56999999999999653
Q ss_pred EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC
Q 040987 158 TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237 (762)
Q Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (762)
.+.+|++.+++.+......|...
T Consensus 105 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 127 (343)
T 3lrv_A 105 ---------------------------------------------------------QITILDSKTNKVLREIEVDSANE 127 (343)
T ss_dssp ---------------------------------------------------------EEEEEETTTCCEEEEEECCCSSC
T ss_pred ---------------------------------------------------------ceEEeecCCcceeEEeecCCCCC
Confidence 34567777777665666678889
Q ss_pred ceEEEECC--CCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCc
Q 040987 238 PQVITISS--SGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314 (762)
Q Consensus 238 v~~~~~sp--dg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~ 314 (762)
|.+++|+| +++++++ +.|+.|++||+.+++.. ......|...|.+++|+|++++|++|+.||.|++||+.+++
T Consensus 128 v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 128 IIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQY----IVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp EEEEECCC---CCEEEEEETTCCEEEEESSSSCEE----EEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred EEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEE----EEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 99999999 9999985 57999999999988753 12223566689999999999999999999999999997764
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCC
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPR 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~ 392 (762)
.. ...+.. |...|.+++|+|+|.+|++++. +.|++||+++++... +..
T Consensus 204 ~~-----------------------------~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 204 QA-----------------------------SSRFPVDEEAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp SC-----------------------------CEECCCCTTSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCC
T ss_pred CC-----------------------------ccEEeccCCCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecc
Confidence 32 145666 9999999999999999999994 599999999887642 221
Q ss_pred ---CCCCe--EEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC---CCCEEEE
Q 040987 393 ---IGSPL--LYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH---DGGLVAL 463 (762)
Q Consensus 393 ---~~~~v--~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~ 463 (762)
+...+ .+++|+|+|++|++++. ++.+++|++......... ..+..++|.+ +.+.+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~ 319 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK--------------DEESALCLQSDTADFTDMDV 319 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE--------------EEEEECCC----CCCCEEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe--------------cCceeEecCccccccceeEE
Confidence 22233 46999999999999988 999999999764322221 2446677888 8889999
Q ss_pred eecCceEEEEEcC
Q 040987 464 RAENYCIHFYSLL 476 (762)
Q Consensus 464 ~~~dg~i~i~d~~ 476 (762)
++.|+.+.++-..
T Consensus 320 ~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 320 VCGDGGIAAILKT 332 (343)
T ss_dssp EEETTEEEEEEEC
T ss_pred EecCCceEEEEec
Confidence 9999999887543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.7e-30 Score=261.01 Aligned_cols=290 Identities=11% Similarity=0.137 Sum_probs=213.9
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE-EEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS-ISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~d 422 (762)
.++.....|...|.+++|+|||++|++++.++ +++||..+++......+. .+..+++.++++.++ +++.++.|++||
T Consensus 10 ~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 10 NPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTNYVAFVTGVKEVVHIWD 87 (355)
T ss_dssp ---------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred CCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence 34456688999999999999999999988765 789999887765433332 477788888888874 566788999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC-CceeeEEeecccccCCCCcceeE
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD-RGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
..+++.+..+.. . ..|.+++++++. ++++ .++.|++||+.++ +.+..+.. ..
T Consensus 88 ~~~~~~~~~~~~-~----------~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~-------------~~ 140 (355)
T 3vu4_A 88 DVKKQDVSRIKV-D----------APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR-------------FG 140 (355)
T ss_dssp TTTTEEEEEEEC-S----------SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-------------EE
T ss_pred CCCCcEEEEEEC-C----------CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-------------CC
Confidence 999999888863 2 578999998874 4443 4788999999987 55544432 24
Q ss_pred EEEEEecCCCeEEEE--eeeccccCCCceeEEEEEEecCCCceeE---------E-E-EEeecCCCCCceEEEEEcCCCC
Q 040987 502 TLVALSQDGSLMSTV--DIKLAEEGIGSLVCLKFWVSGTQNKEFT---------L-S-TIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~--~~~~~~~~~~~d~~i~iwd~~~~~~~~~---------~-~-~~~~~~h~~~~v~~~~~spd~~ 568 (762)
..+++++ .+++++ + .++.|++||+.++..... + + ...+.+| ...|++++|+|+|+
T Consensus 141 ~~~~~s~--~~la~~sg~---------~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h-~~~v~~~~~s~~g~ 208 (355)
T 3vu4_A 141 GVCEFSN--GLLVYSNEF---------NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH-TNPIKMVRLNRKSD 208 (355)
T ss_dssp EEEEEET--TEEEEEESS---------CTTCEEEEECCC------------------CCEEECCC-SSCEEEEEECTTSS
T ss_pred ceEEEEc--cEEEEeCCC---------cCcEEEEEECCCCCccccccccccccccCcccEEEEcc-CCceEEEEECCCCC
Confidence 4566777 677764 4 789999999997651100 0 0 1234789 99999999999999
Q ss_pred eEEEEeCCCc-EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE--EEE
Q 040987 569 AAVSSSYGGD-FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL--VAV 644 (762)
Q Consensus 569 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~--~~~ 644 (762)
+|++++.|++ |++||+.+++....+. ...|...|++++|+|||++|++++ |++|++||+..+.. ...
T Consensus 209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~---------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~ 279 (355)
T 3vu4_A 209 MVATCSQDGTIIRVFKTEDGVLVREFR---------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHA 279 (355)
T ss_dssp EEEEEETTCSEEEEEETTTCCEEEEEE---------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEE
T ss_pred EEEEEeCCCCEEEEEECCCCcEEEEEE---------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccc
Confidence 9999999998 9999999887665541 012789999999999999999998 99999999976531 111
Q ss_pred ec---------------------cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 645 IG---------------------ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 645 l~---------------------~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
+. .+..+...++|++||++|++++.||. +++|++..++.
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~--~~~~~~~~~~~ 339 (355)
T 3vu4_A 280 LKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRM--IETFKVVFDDE 339 (355)
T ss_dssp TTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTE--EEEEEEEEETT
T ss_pred ccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCe--EEEEEEEcCCC
Confidence 11 11223467999999999999999998 99999877554
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=294.89 Aligned_cols=261 Identities=13% Similarity=0.131 Sum_probs=216.0
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.++.. .....+.+|.+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~----------------------------~~~~~l~~h~~ 54 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH----------------------------KLIDTLTGHEG 54 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE----------------------------EEEEEECCCSS
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC----------------------------ccceeccCCcC
Confidence 45679999999999999999999999999999999864321 24567889999
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCC--CCeEEEEecCCcEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
.|.+++|+++ +++|++++.||.|++||+.+++. .....|...|.+++|+|+ ++.+++++.||.|++||+.++.
T Consensus 55 ~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~ 134 (753)
T 3jro_A 55 PVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG 134 (753)
T ss_dssp CEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred ceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence 9999999988 99999999999999999999862 456778899999999999 9999999999999999998763
Q ss_pred --EEEEEccCCCCCCCCCcccCceeeEEEeC-------------CCCEEEEeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 428 --IIRSISGIKLPCPLPEEYKGLCRDIAFNH-------------DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 428 --~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....+.+|. ..|.+++|+| ++.++++++.||.|++||+.++............|
T Consensus 135 ~~~~~~~~~~~----------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h- 203 (753)
T 3jro_A 135 TTSPIIIDAHA----------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH- 203 (753)
T ss_dssp CCCCEEEECCS----------SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC-
T ss_pred CcceeEeecCC----------CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC-
Confidence 333455555 7899999999 58999999999999999999886655544444444
Q ss_pred CCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 493 PGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
...|.+++|+|+ +++|++++ .|+.|++||+.++............+| ...|++++|+|++++
T Consensus 204 -----~~~V~~l~~sp~~~~~~~l~s~s---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~v~~l~~spdg~~ 268 (753)
T 3jro_A 204 -----SDWVRDVAWSPTVLLRSYLASVS---------QDRTCIIWTQDNEQGPWKKTLLKEEKF-PDVLWRASWSLSGNV 268 (753)
T ss_dssp -----SSCEEEEEECCCCSSSEEEEEEE---------SSSCEEEEEESSSSSCCBCCBSSSSCC-SSCCCCEEECTTTCC
T ss_pred -----CCcEEEEEeccCCCCCCEEEEEe---------cCCEEEEecCCCCCCcceeEEeccCCC-CCceEEEEEcCCCCE
Confidence 778999999999 89999999 899999999998754322222223456 889999999999999
Q ss_pred EEEEeCCCcEEEEEcccccc
Q 040987 570 AVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 570 l~~~~~dg~i~iwd~~~~~~ 589 (762)
+++++.||.|++||+..+..
T Consensus 269 l~s~s~Dg~I~vwd~~~~~~ 288 (753)
T 3jro_A 269 LALSGGDNKVTLWKENLEGK 288 (753)
T ss_dssp EEEECSSSCEECCBCCSSSC
T ss_pred EEEEcCCCEEEEEecCCCCC
Confidence 99999999999999986543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=266.79 Aligned_cols=295 Identities=12% Similarity=0.043 Sum_probs=227.1
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCc---eec-cC--------------------------------------
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK---KKF-LP-------------------------------------- 391 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~---~~~-~~-------------------------------------- 391 (762)
.++.+++|+++|++|+++ .++.|++||+.+++ ... ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 468899999999966655 57899999999888 321 11
Q ss_pred ----------------CCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcC--CceEEEEEccCCCCCCCCCcccCceeeE
Q 040987 392 ----------------RIGSPLLYFTESPDPSLS-SISCADNQVHLLKMP--SMEIIRSISGIKLPCPLPEEYKGLCRDI 452 (762)
Q Consensus 392 ----------------~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 452 (762)
.+...|.+++|+|++++| ++++.|+.|++||+. +++.+..+..+. +...+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------~~~~v~~~ 155 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFC--------FSKRPNAI 155 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEE--------CSSCEEEE
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeeccc--------CCCCceEE
Confidence 223369999999999996 888899999999999 888888876432 12688999
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCcee
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~ 529 (762)
+|+|++++|++++.+|.+++|++.++............| ...|.+++|+|+ +++|++++ .|+
T Consensus 156 ~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~sp~~~~~~~l~s~~---------~d~ 220 (450)
T 2vdu_B 156 SIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH------VSMLTDVHLIKDSDGHQFIITSD---------RDE 220 (450)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC------SSCEEEEEEEECTTSCEEEEEEE---------TTS
T ss_pred EEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc------cCceEEEEEcCCCCCCcEEEEEc---------CCC
Confidence 999999999999999999999998776543111111222 677999999999 99999999 889
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCce-ee--------
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGW-SC-------- 600 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~-------- 600 (762)
.|++||+.++.....+ ..+| ...|.+++|+ ++++|++++.|+.|++||+.+++....+..... ..
T Consensus 221 ~i~vwd~~~~~~~~~~----~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (450)
T 2vdu_B 221 HIKISHYPQCFIVDKW----LFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLA 294 (450)
T ss_dssp CEEEEEESCTTCEEEE----CCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC
T ss_pred cEEEEECCCCceeeee----ecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccc
Confidence 9999999988776553 2578 8999999999 999999999999999999998876554420000 00
Q ss_pred -----eeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeC--CCC---eEEEEeccccCceeEEEEeCCCCEEEEE-
Q 040987 601 -----HAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDP--DRN---VLVAVIGETLTPIMNMSFVGSSEYLVAT- 667 (762)
Q Consensus 601 -----~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~--~~~---~~~~~l~~~~~~v~~~~~s~dg~~l~s~- 667 (762)
..........|.+++|+|++++|++++ |+.|++|++ .++ +.+..+.+| ..|.+++|+|++ ++++.
T Consensus 295 ~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~ 372 (450)
T 2vdu_B 295 PPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLD 372 (450)
T ss_dssp ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEEC
T ss_pred cccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEe
Confidence 000012346789999999999999885 899999999 666 778888888 889999999964 44444
Q ss_pred Ec------CCCCeEEEEECCC
Q 040987 668 SW------GSKPQLSVWNMSK 682 (762)
Q Consensus 668 ~~------d~~~~v~vwd~~~ 682 (762)
+. +.. |.+|.+..
T Consensus 373 ~~~~~~~~~~~--i~v~~~~~ 391 (450)
T 2vdu_B 373 NKESSGVQKNF--AKFIEYNL 391 (450)
T ss_dssp CTTCCSSCCCS--EEEEEEET
T ss_pred cccCCCCCCcc--eEEEEEEc
Confidence 33 333 78887654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-29 Score=269.44 Aligned_cols=347 Identities=12% Similarity=0.067 Sum_probs=260.1
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCE
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY 367 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 367 (762)
+|+|++..+++++.|+.|.+||..+++.. ..+..+.. +..++|+|||++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~------------------------------~~i~~g~~-~~~v~~spdg~~ 192 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIV------------------------------KVIDTGYA-VHISRMSASGRY 192 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEE------------------------------EEEECSTT-EEEEEECTTSCE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEE------------------------------EEEecCcc-cceEEECCCCCE
Confidence 48899999999999999999999777543 44542222 889999999999
Q ss_pred EEEEecCCeEEEEec--CCCceeccCCCCCCeEEEEeCC----CCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 368 LYSGGKEGVLVVWQL--DTGKKKFLPRIGSPLLYFTESP----DPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 368 l~s~~~dg~i~~wd~--~~~~~~~~~~~~~~v~~~~~s~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
|++++.|++|.+||+ .+++..........+..++|+| ||+++++++. ++.|.+||..+++++..+..+.....
T Consensus 193 l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~ 272 (543)
T 1nir_A 193 LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVD 272 (543)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSS
T ss_pred EEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccC
Confidence 999999999999999 7877765445667789999999 9999999875 89999999999999988865321110
Q ss_pred CCCcc-cCceeeEEEeCCCCE-EEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 441 LPEEY-KGLCRDIAFNHDGGL-VALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 441 ~~~~~-~~~v~~~~~s~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
....| ...+..+.++|++.. +++...++.|.+||..+.+.+....... ...+.+++|+|+|+++++++.
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---------~~~~~~~~~spdg~~l~va~~ 343 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---------APFLHDGGWDSSHRYFMTAAN 343 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---------CSSCCCEEECTTSCEEEEEEG
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---------CcCccCceECCCCCEEEEEec
Confidence 00011 136889999997665 5566678999999998876544211111 234678899999998877653
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC-CCeEEEEe-CCCcEEEEEcccccccccccCC
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN-RRAAVSSS-YGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.+++|.+||..+++....+.. -..+| .+....+ ++|+ +..++++. .|++|.+||+.+.... ..
T Consensus 344 --------~~~~v~v~D~~tg~l~~~i~~-g~~ph-~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~----~~ 408 (543)
T 1nir_A 344 --------NSNKVAVIDSKDRRLSALVDV-GKTPH-PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHP----QY 408 (543)
T ss_dssp --------GGTEEEEEETTTTEEEEEEEC-SSSBC-CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT----TT
T ss_pred --------CCCeEEEEECCCCeEEEeecc-CCCCC-CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCc----hh
Confidence 578999999999977665542 11236 4433333 5777 66667765 5799999999873211 11
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc--------CCeEEEEeCCCCeEE-EEe--------ccccCceeEEEEeC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--------ETVITLWDPDRNVLV-AVI--------GETLTPIMNMSFVG 659 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--------d~~i~iwd~~~~~~~-~~l--------~~~~~~v~~~~~s~ 659 (762)
.|.+......+...+..++|+|||++|++++ +++|.|||+++++.. ..+ ..+...+.+++|+|
T Consensus 409 ~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 409 AWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp BTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred cCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC
Confidence 3555556667778888999999999999986 569999999998766 443 34567799999999
Q ss_pred CCCEEEEEEc-----CCCCeEEEEECCCCceeeEEEE
Q 040987 660 SSEYLVATSW-----GSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 660 dg~~l~s~~~-----d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
||+.|+++.. |+. |.|||.+++++...+..
T Consensus 489 ~g~~~~~s~~~~~~~~~~--i~v~D~~t~~~~~~i~~ 523 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSA--LVVVDDKTLKLKAVVKD 523 (543)
T ss_dssp SSSEEEEEEECCTTSCCE--EEEEETTTTEEEEEECC
T ss_pred CCCEEEEEeecCCCCCCe--EEEEECCCceEEEeecC
Confidence 9999998743 555 99999999999877663
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-30 Score=267.39 Aligned_cols=277 Identities=9% Similarity=0.005 Sum_probs=184.5
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee------ccCCCCCCeEEEEeCC--------CCCeEEEEecCC
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK------FLPRIGSPLLYFTESP--------DPSLSSISCADN 416 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~v~~~~~s~--------~~~~l~~~~~d~ 416 (762)
.|........+++++.+|++++.|++|++||.++++.. .+.+|.+.|.+++|+| |+++|++++.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 34444555566777889999999999999999988652 3567899999999997 889999999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+|++||+.++..+..+.+|. ..+.+++|+|++. +|++++.|+.|++||+.+++...........+
T Consensus 167 tv~~Wd~~~~~~~~~~~~~~----------~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~---- 232 (393)
T 4gq1_A 167 TLIIWRLTDEGPILAGYPLS----------SPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK---- 232 (393)
T ss_dssp EEEEEEEETTEEEEEEEECS----------SCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS----
T ss_pred eEEEEECCCCceeeeecCCC----------CCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc----
Confidence 99999999888877777776 7889999999874 79999999999999999876544432211110
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc-CCCCeEEEEe
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH-PNRRAAVSSS 574 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s-pd~~~l~~~~ 574 (762)
... .++++...+.. .. ...+| ...+.++.|+ ||++.|++++
T Consensus 233 --~~~----~~s~~~~~~~~----------------------------~~---~~~~~-~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 233 --NPW----LLTLNTLPLVN----------------------------TC---HSSGI-ASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp --CCC----SEEEESGGGC-------------------------------------CC-SSSCSEEEEETTTTCEEEEEC
T ss_pred --cce----EEeccccccee----------------------------ee---ecccc-cccceeeeeecCCCCEEEEEe
Confidence 000 01110000000 00 01356 7788899986 7999999999
Q ss_pred CCCcEEEEEcccccccccccCCcee--------eeeecccCCCCeEEEEEcC-CCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWS--------CHAVGSYKKKAMTAAAFSA-DGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~s~-dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.|+++++||+..+.....+...... .......+...+..+.+.+ ++.++++|+ |+.|++||+.+++++..
T Consensus 275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~ 354 (393)
T 4gq1_A 275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI 354 (393)
T ss_dssp TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence 9999999999877655443200000 0000111122222333333 444667777 99999999999998888
Q ss_pred eccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 645 IGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
+.+|..+|.+++|+|||++||+++.|| +.+|++..
T Consensus 355 ~~~~~~~V~svafspdG~~LA~as~~G---v~lvrL~g 389 (393)
T 4gq1_A 355 PIQLGMPIVDFCWHQDGSHLAIATEGS---VLLTRLMG 389 (393)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEESSE---EEEEEEGG
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEEeC
Confidence 888999999999999999999999988 88887653
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-29 Score=253.63 Aligned_cols=265 Identities=8% Similarity=0.061 Sum_probs=203.1
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc---------cceEEeeec
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS---------TGLQISSLE 111 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~---------~~~~~~~l~ 111 (762)
++.++++|+.||.|++||+.+++...... ...|.+ ++|+|+ +++++ |++|++|+.. +++.++.+.
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-~~~v~~-~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~ 121 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT-TPNPRT-GGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIE 121 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE-EECCCT-TCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe-cCCcee-eeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEee
Confidence 57899999999999999999876654433 567886 999998 88887 7999999654 555555554
Q ss_pred -CCccceeEEEEeC--CCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceE
Q 040987 112 -GHKAPVTTVIVVP--ASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLF 188 (762)
Q Consensus 112 -~h~~~V~~v~~s~--~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 188 (762)
+|.+.|.+++|+| ++ .++++++.|++|++||+.+++++....
T Consensus 122 ~~~~~~v~~~~~~~~~~~-------~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------------- 166 (343)
T 3lrv_A 122 VDSANEIIYMYGHNEVNT-------EYFIWADNRGTIGFQSYEDDSQYIVHS---------------------------- 166 (343)
T ss_dssp CCCSSCEEEEECCC---C-------CEEEEEETTCCEEEEESSSSCEEEEEC----------------------------
T ss_pred cCCCCCEEEEEcCCCCCC-------CEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------
Confidence 7888999999999 99 789999999999999999887644321
Q ss_pred EEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCch
Q 040987 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVE 267 (762)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~ 267 (762)
..+...+.+++|+|||++||++ .|+.|++||+.+++
T Consensus 167 -------------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 167 -------------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp -------------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT
T ss_pred -------------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC
Confidence 1234568899999999999965 79999999999887
Q ss_pred hhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccc
Q 040987 268 AERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLC 346 (762)
Q Consensus 268 ~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (762)
.. ...+.. |...|.+++|+|++.+|++++ ++.|++||+...+... .+
T Consensus 204 ~~----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~---------------------------~~ 251 (343)
T 3lrv_A 204 QA----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL---------------------------AY 251 (343)
T ss_dssp SC----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB---------------------------SS
T ss_pred CC----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce---------------------------ee
Confidence 42 123344 999999999999999999999 5599999997764322 11
Q ss_pred eeeeccccce--eEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCCCeEEEEeCC---CCCeEEEEecCCcEEE
Q 040987 347 TTWHWHPSEV--SVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGSPLLYFTESP---DPSLSSISCADNQVHL 420 (762)
Q Consensus 347 ~~~~~h~~~v--~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~d~~i~i 420 (762)
..+..|...+ .+++|+|+|++|++++. |+.+++|++++....... .++..+.|++ +.+.+++++.|+.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~~~~ 328 (343)
T 3lrv_A 252 PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK---DEESALCLQSDTADFTDMDVVCGDGGIAA 328 (343)
T ss_dssp CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE---EEEEECCC----CCCCEEEEEEETTEEEE
T ss_pred cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe---cCceeEecCccccccceeEEEecCCceEE
Confidence 2222233334 36999999999999988 999999999765542221 4567788888 8899999999999888
Q ss_pred EEcC
Q 040987 421 LKMP 424 (762)
Q Consensus 421 ~d~~ 424 (762)
+-..
T Consensus 329 ~~~~ 332 (343)
T 3lrv_A 329 ILKT 332 (343)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7544
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-29 Score=261.85 Aligned_cols=257 Identities=18% Similarity=0.250 Sum_probs=209.8
Q ss_pred eeeecCcccccCCceeecC-CCEEEEEe-CCEEEEEEccc----------ceEEeeecCCccceeEEEEeCCCCccccee
Q 040987 66 KMIRGGRSYVSSPPAFSND-VKRLLVCT-SNTVSIFSTST----------GLQISSLEGHKAPVTTVIVVPASTPATKIL 133 (762)
Q Consensus 66 ~~~~~h~~~v~~~~~~s~d-g~~la~~~-~~~i~iwd~~~----------~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~ 133 (762)
....+|.+.|.+ ++|+|+ +++||+++ +|.|+|||+.+ .+.+.++.+|...|++++|+|+++
T Consensus 122 ~~~~~h~~~v~~-l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~------ 194 (430)
T 2xyi_A 122 EIKINHEGEVNR-ARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN------ 194 (430)
T ss_dssp EEEEEESSCCSE-EEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST------
T ss_pred EEEEcCCCcEEE-EEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC------
Confidence 456889999998 999998 68899988 69999999987 678889999999999999999994
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcc
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMN 213 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d 213 (762)
.+|++++.||+|++||+.++..... ....
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~------~~~~--------------------------------------------- 223 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHR------VIDA--------------------------------------------- 223 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGG------EEEC---------------------------------------------
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCc------eecc---------------------------------------------
Confidence 3889999999999999987432100 0000
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECC-CCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISS-SGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
......|...|.+++|+| ++.+++++ .++.|++||+.++... ........|...|++++|+|
T Consensus 224 --------------~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~v~~i~~~p 287 (430)
T 2xyi_A 224 --------------KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS--KPSHTVDAHTAEVNCLSFNP 287 (430)
T ss_dssp --------------SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS--SCSEEEECCSSCEEEEEECS
T ss_pred --------------ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC--cceeEeecCCCCeEEEEeCC
Confidence 023446788899999999 67777754 7999999999987421 12244568999999999999
Q ss_pred CCc-EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC-EEE
Q 040987 292 TQR-IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA-YLY 369 (762)
Q Consensus 292 ~~~-~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~ 369 (762)
+++ ++++|+.||.|++||+.... .++..+.+|...|.+++|+|+++ +|+
T Consensus 288 ~~~~~l~tg~~dg~v~vwd~~~~~-----------------------------~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 288 YSEFILATGSADKTVALWDLRNLK-----------------------------LKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp SCTTEEEEEETTSEEEEEETTCTT-----------------------------SCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCC-----------------------------CCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 987 68899999999999997532 23567888999999999999985 699
Q ss_pred EEecCCeEEEEecCCC--------------ce-eccCCCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCC
Q 040987 370 SGGKEGVLVVWQLDTG--------------KK-KFLPRIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPS 425 (762)
Q Consensus 370 s~~~dg~i~~wd~~~~--------------~~-~~~~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~ 425 (762)
+++.|+.|++||+... +. .....|...|.+++|+|+++ ++++++.|+.|++|++..
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999999999999872 22 23456778899999999999 899999999999999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=236.68 Aligned_cols=287 Identities=14% Similarity=0.044 Sum_probs=203.1
Q ss_pred EEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccc
Q 040987 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMN 329 (762)
Q Consensus 250 la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 329 (762)
++++....|++|+..++..- ........|+.+|..+.+.||..-|+.. .+=++
T Consensus 57 ~~~~~~~~v~lw~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~------~~~~~------------------- 109 (356)
T 2w18_A 57 IITACEDVVSLWKALDAWQW--EKLYTWHFAEVPVLQIVPVPDVYNLVCV------ALGNL------------------- 109 (356)
T ss_dssp EEEEESSEEEEEEESSSSBE--EEEEEEECCSSCEEEECCCTTCCSCEEE------EECSS-------------------
T ss_pred EEEeccceEEEcccCCCccc--eeeEEEeccCceeEEEEEcCcccceeee------eeccc-------------------
Confidence 45678899999999987322 3346777899999999999986544432 11112
Q ss_pred cccCCCCcccCCccccceeeeccccceeEEEEecC----CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCC
Q 040987 330 NEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD----GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD 405 (762)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~ 405 (762)
+...|..++|+|| ++.+++++. .+.+|++. +
T Consensus 110 ----------------------~~~~v~sla~spd~~~~~~~l~s~g~--~~~v~~l~---------------------~ 144 (356)
T 2w18_A 110 ----------------------EIREIRALFCSSDDESEKQVLLKSGN--IKAVLGLT---------------------K 144 (356)
T ss_dssp ----------------------SEEEEEEECC------CCEEEEEEEE--EEEEEEET---------------------T
T ss_pred ----------------------cccceEEEEECCCccccccEEEeCCC--eEEEEecC---------------------C
Confidence 4456899999999 999999875 47778653 3
Q ss_pred CCeEEEEe--cCCcEEEEEc-CCceEEEEEccCCCCCCCCCcccCceeeEEEeC---CCCEEEEeecCceEEEEEcCCCC
Q 040987 406 PSLSSISC--ADNQVHLLKM-PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH---DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 406 ~~~l~~~~--~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
++++.++. .|+.|++|++ .+++.+..+.+|. ..+..++|++ ++.+|++++.|++|++||+.+++
T Consensus 145 g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~----------~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk 214 (356)
T 2w18_A 145 RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP----------PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQ 214 (356)
T ss_dssp TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC----------CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCC
T ss_pred CcEEEecccCCCCcEEEEEECCCCceeeeeccCC----------CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCc
Confidence 44444432 4788888888 4477777777776 5678889998 78999999999999999999999
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
.+..+..... +...+.+++|+|+|+++++++. + . .+
T Consensus 215 ~l~tL~g~~~-------~v~~v~~vafSpdG~~lvs~s~---------~------------------------~---~~- 250 (356)
T 2w18_A 215 LLKKMHIDDS-------YQASVCHKAYSEMGLLFIVLSH---------P------------------------C---AK- 250 (356)
T ss_dssp EEEEEECCC----------CCCEEEEEEETTEEEEEEC------------------------------------------
T ss_pred EEEEEcCCCc-------ceeeeEEEEECCCCCEEEEecc---------C------------------------C---Cc-
Confidence 8887753110 1345788899999999888761 0 0 00
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC
Q 040987 560 AVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR 638 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~ 638 (762)
..+++|+.|++|++||..+++....+. .....+|...+.+..+ ++.++|+++ |++|+|||+.+
T Consensus 251 --------w~laSGs~D~tIklWd~~tgk~l~v~~------~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~t 314 (356)
T 2w18_A 251 --------ESESLRSPVFQLIVINPKTTLSVGVML------YCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLL 314 (356)
T ss_dssp ---------------CCEEEEEEETTTTEEEEEEE------ECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTT
T ss_pred --------ceeeccCCCcEEEEEECCCCEEEEEEE------eeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCC
Confidence 146788888899999988877654320 0001234444444444 488999998 99999999999
Q ss_pred CeEEEEeccccCcee-EEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 639 NVLVAVIGETLTPIM-NMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 639 ~~~~~~l~~~~~~v~-~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
++++.++.+|...+. .++|||||++|++++.|++ |+|||+
T Consensus 315 Gk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T--IklWd~ 355 (356)
T 2w18_A 315 GQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN--IFVYHY 355 (356)
T ss_dssp CSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC--EEEEEE
T ss_pred CcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc--EEEecC
Confidence 999999999987755 5899999999999999999 999985
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-27 Score=257.71 Aligned_cols=336 Identities=12% Similarity=0.086 Sum_probs=250.8
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeC--CCcce
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF--SVPEL 155 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~--~~~~~ 155 (762)
.+|+|++++++++. +++|.+||..+++++.++..+.. +.+++|+||| ++|++++.|++|++||+ .++++
T Consensus 143 ~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg-------~~l~v~~~d~~V~v~D~~~~t~~~ 214 (543)
T 1nir_A 143 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASG-------RYLLVIGRDARIDMIDLWAKEPTK 214 (543)
T ss_dssp SCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTS-------CEEEEEETTSEEEEEETTSSSCEE
T ss_pred cccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCC-------CEEEEECCCCeEEEEECcCCCCcE
Confidence 56999999888888 69999999999999999984333 8999999999 78899999999999999 77777
Q ss_pred EEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccC
Q 040987 156 LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEM 235 (762)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (762)
+.++.. .
T Consensus 215 ~~~i~~-------------------------------------------------------------------------g 221 (543)
T 1nir_A 215 VAEIKI-------------------------------------------------------------------------G 221 (543)
T ss_dssp EEEEEC-------------------------------------------------------------------------C
T ss_pred EEEEec-------------------------------------------------------------------------C
Confidence 665542 2
Q ss_pred CCceEEEECC----CCCEEEEE--eCCeEEEEEccCchhhhheeeeeeec----------c-CcCeEEEEEcCCCc-EEE
Q 040987 236 KEPQVITISS----SGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLH----------H-TKKLTVLAFHPTQR-IVA 297 (762)
Q Consensus 236 ~~v~~~~~sp----dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~----------~-~~~v~~~~~sp~~~-~l~ 297 (762)
..+..++|+| ||++|+++ .++.|.+||..+++.. ..... | ...+.++.++|+++ +++
T Consensus 222 ~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~-----~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 222 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPK-----QIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEE-----EEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccc-----eeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 2356789999 99999865 4899999999988754 22221 2 23789999999766 555
Q ss_pred EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCe
Q 040987 298 AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGV 376 (762)
Q Consensus 298 ~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~ 376 (762)
+...++.|.+||..+.+.+. +..+ .+...+..+.|+|+|+++++++ .+++
T Consensus 297 s~~~~g~i~vvd~~~~~~l~----------------------------~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~ 347 (543)
T 1nir_A 297 NVKETGKVLLVNYKDIDNLT----------------------------VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNK 347 (543)
T ss_dssp EETTTTEEEEEECTTSSSCE----------------------------EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTE
T ss_pred EECCCCeEEEEEecCCCcce----------------------------eEEe-ccCcCccCceECCCCCEEEEEecCCCe
Confidence 66778999999987653221 1122 2455678899999999877655 5789
Q ss_pred EEEEecCCCceeccCC-----CCCCeEEEEeCCC-CCeEEEEe-cCCcEEEEEcCC-------ceEEEEEccCCCCCCCC
Q 040987 377 LVVWQLDTGKKKFLPR-----IGSPLLYFTESPD-PSLSSISC-ADNQVHLLKMPS-------MEIIRSISGIKLPCPLP 442 (762)
Q Consensus 377 i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~-~d~~i~i~d~~~-------~~~~~~~~~~~~~~~~~ 442 (762)
|.+||..+++...... |......+ ++|+ +..++++. .+++|.+||..+ +++++++.++.
T Consensus 348 v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g------ 420 (543)
T 1nir_A 348 VAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQG------ 420 (543)
T ss_dssp EEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC------
T ss_pred EEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCC------
Confidence 9999999998754222 33333333 4677 55555554 579999999998 89999998876
Q ss_pred CcccCceeeEEEeCCCCEEEEee-------cCceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRA-------ENYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~-------~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
+.+..++++|++++|++++ .+++|.+||+.+++...+. .... ......+...+..++|+|+|+.++
T Consensus 421 ----~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~~~~g~~~~ 494 (543)
T 1nir_A 421 ----GGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE--WADLGEGAKRVVQPEYNKRGDEVW 494 (543)
T ss_dssp ----SCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH--HHCCCSSCCEEEEEEECSSSSEEE
T ss_pred ----CCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh--hcccCCCCCceEeccCCCCCCEEE
Confidence 5668899999999999987 2679999999998876332 2110 000011156799999999999999
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
++... +...++.|.+||..+++....++
T Consensus 495 ~s~~~----~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 495 FSVWN----GKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp EEEEC----CTTSCCEEEEEETTTTEEEEEEC
T ss_pred EEeec----CCCCCCeEEEEECCCceEEEeec
Confidence 87420 11146899999999998776653
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-29 Score=261.74 Aligned_cols=251 Identities=15% Similarity=0.211 Sum_probs=206.6
Q ss_pred ccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcCC----------ceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 389 FLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMPS----------MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
....|...|.+++|+|+ +.++++++.+|.|++|++.+ ......+.+|. ..+.+++|+|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~----------~~v~~l~~~~~ 192 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQ----------KEGYGLSWNPN 192 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCS----------SCCCCEEECTT
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCC----------CCeEEEEeCCC
Confidence 34567889999999997 68899999999999999986 56667777776 78899999999
Q ss_pred CC-EEEEeecCceEEEEEcCCCCceeeE---EeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEE
Q 040987 458 GG-LVALRAENYCIHFYSLLDDRGISEV---QVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 458 ~~-~l~~~~~dg~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
+. +|++++.||.|++||+..+...... ...... |...|.+++|+| ++.+|++++ .++.|+
T Consensus 193 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~------h~~~v~~v~~~p~~~~~l~s~~---------~dg~i~ 257 (430)
T 2xyi_A 193 LNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG------HTAVVEDVAWHLLHESLFGSVA---------DDQKLM 257 (430)
T ss_dssp STTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC------CSSCEEEEEECSSCTTEEEEEE---------TTSEEE
T ss_pred CCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC------CCCCEeeeEEeCCCCCEEEEEe---------CCCeEE
Confidence 88 9999999999999999875432111 111112 267799999999 677888888 899999
Q ss_pred EEEecCCC---ceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccc-cccccCCceeeeeecccC
Q 040987 533 FWVSGTQN---KEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSYK 607 (762)
Q Consensus 533 iwd~~~~~---~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~ 607 (762)
+||+++.. ....+ .+| ...|++++|+|+++ ++++++.||.|++||+++... ... ...|
T Consensus 258 i~d~~~~~~~~~~~~~-----~~~-~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~-----------~~~h 320 (430)
T 2xyi_A 258 IWDTRNNNTSKPSHTV-----DAH-TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS-----------FESH 320 (430)
T ss_dssp EEETTCSCSSSCSEEE-----ECC-SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE-----------EECC
T ss_pred EEECCCCCCCcceeEe-----ecC-CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE-----------eecC
Confidence 99999873 33333 467 88999999999987 688999999999999987432 222 3357
Q ss_pred CCCeEEEEEcCCCc-EEEEEc-CCeEEEEeCCC--------------CeEEEEeccccCceeEEEEeCCCC-EEEEEEcC
Q 040987 608 KKAMTAAAFSADGS-VLAVAA-ETVITLWDPDR--------------NVLVAVIGETLTPIMNMSFVGSSE-YLVATSWG 670 (762)
Q Consensus 608 ~~~i~~~~~s~dg~-~la~~~-d~~i~iwd~~~--------------~~~~~~l~~~~~~v~~~~~s~dg~-~l~s~~~d 670 (762)
...|++++|+|+++ +|++++ |+.|+|||+.. .+++..+.+|...|.+++|+|+++ +|++++.|
T Consensus 321 ~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 321 KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 89999999999995 678887 99999999987 367778889999999999999999 89999999
Q ss_pred CCCeEEEEECCCC
Q 040987 671 SKPQLSVWNMSKL 683 (762)
Q Consensus 671 ~~~~v~vwd~~~~ 683 (762)
+. |++|++.++
T Consensus 401 g~--i~iw~~~~~ 411 (430)
T 2xyi_A 401 NI--MQVWQMAEN 411 (430)
T ss_dssp SE--EEEEEECHH
T ss_pred CC--EEEeEcccc
Confidence 98 999999764
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-28 Score=238.28 Aligned_cols=268 Identities=12% Similarity=0.112 Sum_probs=184.4
Q ss_pred EEEEEeCCEEEEEEcccc---eEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc
Q 040987 87 RLLVCTSNTVSIFSTSTG---LQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF 163 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~ 163 (762)
-+++++...|++|+..++ +.++++++|+.+|..+.|+||.. .++..+=..-.+ .
T Consensus 56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~~~~~~~-----------------~ 112 (356)
T 2w18_A 56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY------NLVCVALGNLEI-----------------R 112 (356)
T ss_dssp EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC------SCEEEEECSSSE-----------------E
T ss_pred EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc------ceeeeeeccccc-----------------c
Confidence 577888999999999999 89999999999999999999884 222222111100 1
Q ss_pred ceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE
Q 040987 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243 (762)
Q Consensus 164 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 243 (762)
.+.+++| +++++...... ++++ ..+.+|++.
T Consensus 113 ~v~sla~--------spd~~~~~~~l------------------~s~g--~~~~v~~l~--------------------- 143 (356)
T 2w18_A 113 EIRALFC--------SSDDESEKQVL------------------LKSG--NIKAVLGLT--------------------- 143 (356)
T ss_dssp EEEEECC--------------CCEEE------------------EEEE--EEEEEEEET---------------------
T ss_pred ceEEEEE--------CCCccccccEE------------------EeCC--CeEEEEecC---------------------
Confidence 2223322 22221111111 1111 234555443
Q ss_pred CCCCCEEEEEe---CCeEEEEEccC-chhhhheeeeeeeccCcCeEEEEEcC---CCcEEEEeecCCeEEEEeccCCcee
Q 040987 244 SSSGKYFGIRK---QRKLLIWKVPD-VEAERVVMRKITLHHTKKLTVLAFHP---TQRIVAAGDVTGRILIWRGFGDRTF 316 (762)
Q Consensus 244 spdg~~la~~~---~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~l~~~~~dg~v~vw~~~~~~~~ 316 (762)
+|+++.++. ++.|++|++.. ++.. .....|...+..++|+| ++.+|++++.|++|+|||+.+++.+
T Consensus 144 --~g~lv~ss~~g~d~~V~~~~~s~dG~~~-----~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 144 --KRRLVSSSGTLSDQQVEVMTFAEDGGGK-----ENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp --TTEEEEEESSSTTCEEEEEEECTTSCEE-----EEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEE
T ss_pred --CCcEEEecccCCCCcEEEEEECCCCcee-----eeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEE
Confidence 444444432 66666666633 3322 34557888999999999 7799999999999999999887543
Q ss_pred ecccccccccccccccCCCCcccCCccccceeeeccc---cceeEEEEecCCCEE------------EEEecCCeEEEEe
Q 040987 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP---SEVSVLIFSSDGAYL------------YSGGKEGVLVVWQ 381 (762)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s~~g~~l------------~s~~~dg~i~~wd 381 (762)
+++.+|. ..+.+++|+|+|+++ ++|+.|++|++||
T Consensus 217 ------------------------------~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 217 ------------------------------KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVIN 266 (356)
T ss_dssp ------------------------------EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEE
T ss_pred ------------------------------EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEE
Confidence 4565543 467788999999876 5678899999999
Q ss_pred cCCCceecc------CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce-eeEEE
Q 040987 382 LDTGKKKFL------PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC-RDIAF 454 (762)
Q Consensus 382 ~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~ 454 (762)
..+++.... .++...+.+..+ ++.++++++.|++|+|||+.+++++.++.+|. ..+ ..++|
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~----------~~vvs~vaf 334 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVS----------DQHWSFVKW 334 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC------------CCCCEEEE
T ss_pred CCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCC----------CCeEEEEEE
Confidence 999987432 233334443333 37789999999999999999999999999886 343 45899
Q ss_pred eCCCCEEEEeecCceEEEEEc
Q 040987 455 NHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 455 s~~~~~l~~~~~dg~i~i~d~ 475 (762)
+|||++|++|+.|++|++||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999995
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-27 Score=266.62 Aligned_cols=365 Identities=11% Similarity=0.016 Sum_probs=247.9
Q ss_pred CcCeEEEEEcCCCcEEEEeec-CC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 281 TKKLTVLAFHPTQRIVAAGDV-TG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~-dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
...+.+++|||||++|++++. |+ .|++||+.+++........... +....... ..........+. ...
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~-~~~ 109 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVL----PGTETLSD-EEKARRERQRIA-AMT 109 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------------CCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcc----cccccccc-hhhhhhhhhhhc-ccc
Confidence 457999999999999999988 88 8999999887643321110000 00000000 000000000000 013
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCC---ceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG---KKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
.+.+++|+|||++|++++. +.|++||+.++ +...+..+...+..++|||||++|++++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 4788999999999999886 89999999998 6677777788899999999999999886 56999999998877655
Q ss_pred EccCCCCCCC--C----CcccCceeeEEEeCCCCEEEEeecCc---------------------------------eEEE
Q 040987 432 ISGIKLPCPL--P----EEYKGLCRDIAFNHDGGLVALRAENY---------------------------------CIHF 472 (762)
Q Consensus 432 ~~~~~~~~~~--~----~~~~~~v~~~~~s~~~~~l~~~~~dg---------------------------------~i~i 472 (762)
...+...... . ......+..++|+|||++|++++.|+ .|++
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 4433210000 0 00001247899999999999987765 7889
Q ss_pred EEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 473 YSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 473 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
||+.+ ++.... ... . .+...+..++| |||++|+++..+ ....+..|++||+.+++....+..
T Consensus 268 ~d~~~~~~~~~~-~~~-~------~~~~~~~~~~~-pDg~~l~~~~~~----~~~~~~~i~~~d~~~g~~~~~~~~---- 330 (741)
T 2ecf_A 268 ISPAEQAQTQWI-DLG-K------EQDIYLARVNW-RDPQHLSFQRQS----RDQKKLDLVEVTLASNQQRVLAHE---- 330 (741)
T ss_dssp ECSSTTCCCEEE-CCC-S------CSSEEEEEEEE-EETTEEEEEEEE----TTSSEEEEEEEETTTCCEEEEEEE----
T ss_pred EECCCCCceEEe-cCC-C------CcceEEEEEEe-CCCCEEEEEEec----ccCCeEEEEEEECCCCceEEEEEc----
Confidence 99987 654321 110 0 12677999999 999999987631 112468999999998876554432
Q ss_pred CCCCC---ceEEEEEcCCCCeEEEEeCCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEE-EEcCCCcEEEEE
Q 040987 552 PHRDA---GISAVAFHPNRRAAVSSSYGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAA-AFSADGSVLAVA 626 (762)
Q Consensus 552 ~h~~~---~v~~~~~spd~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~dg~~la~~ 626 (762)
+... .+..++|+|||+++++++.||.++||.+.. +. ...+ ..+...+..+ .|+|||+.|+..
T Consensus 331 -~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l-----------~~~~~~v~~~~~~s~dg~~l~~~ 397 (741)
T 2ecf_A 331 -TSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAAL-----------THGNWSVDELLAVDEKAGLAYFR 397 (741)
T ss_dssp -ECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEES-----------CCSSSCEEEEEEEETTTTEEEEE
T ss_pred -CCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeee-----------eecceEEEeEeEEeCCCCEEEEE
Confidence 2012 456899999999999999999888887752 22 2222 2356677777 599999987654
Q ss_pred -c-CC--eEEEEeCCC-CeEEEEeccccCceeEEEEeCCCCEEEEEEcCC--CCeEEEEECCCCc
Q 040987 627 -A-ET--VITLWDPDR-NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS--KPQLSVWNMSKLS 684 (762)
Q Consensus 627 -~-d~--~i~iwd~~~-~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~--~~~v~vwd~~~~~ 684 (762)
+ ++ .++||++.. ++....+.. ...+..++|||||++|+....+- ...+.+|+...+.
T Consensus 398 ~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~~ 461 (741)
T 2ecf_A 398 AGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGEK 461 (741)
T ss_dssp ECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSCE
T ss_pred EeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCCe
Confidence 4 55 899999864 555666765 56688999999999998875442 1248999886543
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.1e-28 Score=253.30 Aligned_cols=257 Identities=10% Similarity=-0.015 Sum_probs=176.3
Q ss_pred eccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC--------CCcEEEEeecC
Q 040987 232 LAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP--------TQRIVAAGDVT 302 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--------~~~~l~~~~~d 302 (762)
..|........+++++++||++ .|++|+|||..+++.........+.+|.+.|++++|+| |+++||+++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D 165 (393)
T 4gq1_A 86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD 165 (393)
T ss_dssp C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence 3455566667778888888854 79999999999887643334455679999999999998 88999999999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC-CEEEEEecCCeEEEEe
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG-AYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~dg~i~~wd 381 (762)
++|+|||+.++. ++..+.+|...|.+++|+|++ ++|++++.|++|++||
T Consensus 166 ~tv~~Wd~~~~~------------------------------~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd 215 (393)
T 4gq1_A 166 CTLIIWRLTDEG------------------------------PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFD 215 (393)
T ss_dssp SEEEEEEEETTE------------------------------EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEE
T ss_pred CeEEEEECCCCc------------------------------eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEE
Confidence 999999987653 235667788999999999987 4799999999999999
Q ss_pred cCCCceec--------------------------cCCCCCCeEEEEeC-CCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 382 LDTGKKKF--------------------------LPRIGSPLLYFTES-PDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 382 ~~~~~~~~--------------------------~~~~~~~v~~~~~s-~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+.+++... ...+...+.++.|+ +|++.+++++.|+.+++||+..++....+..
T Consensus 216 ~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~ 295 (393)
T 4gq1_A 216 WTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISD 295 (393)
T ss_dssp TTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------
T ss_pred CCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEee
Confidence 98875421 12345567788875 8999999999999999999998777666655
Q ss_pred CCCCCCCCCc--------ccCceeeEEEeC--CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 435 IKLPCPLPEE--------YKGLCRDIAFNH--DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 435 ~~~~~~~~~~--------~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
+......... .........++| ++.++++++.||.|++||+.+++........ ...|.++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~----------~~~V~sv 365 (393)
T 4gq1_A 296 STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQL----------GMPIVDF 365 (393)
T ss_dssp --------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEEC----------SSCEEEE
T ss_pred ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCC----------CCcEEEE
Confidence 5432211000 011222334444 4446777889999999999988776654332 5679999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
+|+|||++||+++ .+ .+.+|.+..
T Consensus 366 afspdG~~LA~as---------~~-Gv~lvrL~g 389 (393)
T 4gq1_A 366 CWHQDGSHLAIAT---------EG-SVLLTRLMG 389 (393)
T ss_dssp EECTTSSEEEEEE---------SS-EEEEEEEGG
T ss_pred EEcCCCCEEEEEe---------CC-CeEEEEEeC
Confidence 9999999999997 44 566776643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-27 Score=243.39 Aligned_cols=286 Identities=10% Similarity=0.083 Sum_probs=224.7
Q ss_pred eeEEEEec----CCC----eEEEEec--CCccee---eeecCcccccCCceeec--------------CCCEEEEEe-C-
Q 040987 43 SFIFAVAR----SSG----LCRTAEY--PAVNSK---MIRGGRSYVSSPPAFSN--------------DVKRLLVCT-S- 93 (762)
Q Consensus 43 ~~~~a~~~----~~g----~i~~~~~--~~~~~~---~~~~h~~~v~~~~~~s~--------------dg~~la~~~-~- 93 (762)
..++++|+ .+| .|++||+ .+++.+ .+.+|...+.. +++++ .+..||+++ +
T Consensus 75 ~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~ 153 (415)
T 2hqs_A 75 IDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRY-AGHTASDEVFEKLTGIKGAFRTRIAYVVQTN 153 (415)
T ss_dssp CCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHH-HHHHHHHHHHHHHHSSCCCTTCEEEEEEECS
T ss_pred CCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHH-HHHHHHHHHHHHHcCCCCcCCCEEEEEEecC
Confidence 44677775 568 8999999 776643 47899999886 88875 266677666 4
Q ss_pred -----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC---eEEEEeCCCcceEEEEEeccce
Q 040987 94 -----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG---TIKYWDFSVPELLKTIDVKFSI 165 (762)
Q Consensus 94 -----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~---~i~vWd~~~~~~~~~~~~~~~v 165 (762)
+.|++||++ +..++.+.+|...|.+++|+||| ++|++++.|+ +|++||+.++++.. +
T Consensus 154 ~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg-------~~la~~s~~~~~~~i~~~d~~tg~~~~-l------ 218 (415)
T 2hqs_A 154 GGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDG-------SKLAYVTFESGRSALVIQTLANGAVRQ-V------ 218 (415)
T ss_dssp SSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTS-------SEEEEEECTTSSCEEEEEETTTCCEEE-E------
T ss_pred CCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCC-------CEEEEEEecCCCcEEEEEECCCCcEEE-e------
Confidence 699999996 55577888899999999999999 6788888775 89999998876532 1
Q ss_pred EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC
Q 040987 166 FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS 245 (762)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 245 (762)
..+...+.+++|+|
T Consensus 219 ------------------------------------------------------------------~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 219 ------------------------------------------------------------------ASFPRHNGAPAFSP 232 (415)
T ss_dssp ------------------------------------------------------------------ECCSSCEEEEEECT
T ss_pred ------------------------------------------------------------------ecCCCcccCEEEcC
Confidence 12345677899999
Q ss_pred CCCEEE-EEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec-CC--eEEEEeccCCceeec
Q 040987 246 SGKYFG-IRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TG--RILIWRGFGDRTFAT 318 (762)
Q Consensus 246 dg~~la-~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg--~v~vw~~~~~~~~~~ 318 (762)
||++|+ ++. +..|++||+.+++. ..+..|...+.+++|+|||++|++++. ++ .|++||+.+++.
T Consensus 233 dg~~la~~~~~~g~~~i~~~d~~~~~~------~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~--- 303 (415)
T 2hqs_A 233 DGSKLAFALSKTGSLNLYVMDLASGQI------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--- 303 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCE------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---
T ss_pred CCCEEEEEEecCCCceEEEEECCCCCE------EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---
Confidence 999988 442 35699999988764 345577889999999999999998876 44 677778866532
Q ss_pred ccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCC
Q 040987 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGS 395 (762)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~ 395 (762)
..+..|...+.+++|+|||++|++++.+ ..|++||+.+++...+..+.
T Consensus 304 ----------------------------~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~- 354 (415)
T 2hqs_A 304 ----------------------------QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF- 354 (415)
T ss_dssp ----------------------------EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-
T ss_pred ----------------------------EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-
Confidence 2344466678899999999999988764 58999999999887666554
Q ss_pred CeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 396 PLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.+.+++|+|||++|++++.++ .|++||+. +.....+..+. +.|.+++|+|...
T Consensus 355 ~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~----------~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 355 LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD----------GQVKFPAWSPYLH 410 (415)
T ss_dssp SCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSS----------SEEEEEEECCCCC
T ss_pred CcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCC----------CCCcCCccccccc
Confidence 899999999999999988776 79999987 55566777766 7899999999654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-27 Score=266.03 Aligned_cols=325 Identities=10% Similarity=0.060 Sum_probs=234.9
Q ss_pred cccccCCceeecCCCEEEEEe--CC-----EEEEEEcccceEEeeecCCcc------------------------ceeEE
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT--SN-----TVSIFSTSTGLQISSLEGHKA------------------------PVTTV 120 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~--~~-----~i~iwd~~~~~~~~~l~~h~~------------------------~V~~v 120 (762)
...+.. ++|||||++||+++ ++ .|.+||+++++....+..|.. .|.++
T Consensus 36 ~~~~~~-~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMK-PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEE-EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCC-ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 345776 99999999999988 46 899999999988777765543 38999
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCc---ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecc
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVP---ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTR 197 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (762)
+||||| ++|++++. ++|.+||+.++ +..
T Consensus 115 ~~SpDg-------~~l~~~~~-~~i~~~d~~~~~~~~~~----------------------------------------- 145 (741)
T 2ecf_A 115 QWSPDA-------QRLLFPLG-GELYLYDLKQEGKAAVR----------------------------------------- 145 (741)
T ss_dssp EECTTS-------SEEEEEET-TEEEEEESSSCSTTSCC-----------------------------------------
T ss_pred EECCCC-------CEEEEEeC-CcEEEEECCCCCcceEE-----------------------------------------
Confidence 999999 57777775 89999998876 321
Q ss_pred ccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee
Q 040987 198 ETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT 277 (762)
Q Consensus 198 ~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~ 277 (762)
.+..+...+..++|||||++||.+.++.|++||+.+++.. ...
T Consensus 146 --------------------------------~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~-----~~~ 188 (741)
T 2ecf_A 146 --------------------------------QLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQM-----QLT 188 (741)
T ss_dssp --------------------------------BCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEE-----ECC
T ss_pred --------------------------------EcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEE-----Eec
Confidence 1223455678899999999999888899999999987643 333
Q ss_pred eccCcC----------------eEEEEEcCCCcEEEEeecCC---------------------------------eEEEE
Q 040987 278 LHHTKK----------------LTVLAFHPTQRIVAAGDVTG---------------------------------RILIW 308 (762)
Q Consensus 278 ~~~~~~----------------v~~~~~sp~~~~l~~~~~dg---------------------------------~v~vw 308 (762)
..+... +.+++|||||++|++++.|+ .|++|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 333322 47899999999999987765 67778
Q ss_pred eccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-----CCeEEEEec
Q 040987 309 RGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-----EGVLVVWQL 382 (762)
Q Consensus 309 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----dg~i~~wd~ 382 (762)
|+.+ ++... +.....|...+..++| |||++|++++. +..|++||+
T Consensus 269 d~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 269 SPAEQAQTQW----------------------------IDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp CSSTTCCCEE----------------------------ECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEET
T ss_pred ECCCCCceEE----------------------------ecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEEC
Confidence 8765 53221 0011146778999999 99999997654 568999999
Q ss_pred CCCceeccCCC-CC----CeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccCCCCCCCCCcccCceeeE-EEe
Q 040987 383 DTGKKKFLPRI-GS----PLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGIKLPCPLPEEYKGLCRDI-AFN 455 (762)
Q Consensus 383 ~~~~~~~~~~~-~~----~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s 455 (762)
.+++...+... .. .+..++|+|||++++++..++.+++|.++ .++ ...+..+. ..+..+ .|+
T Consensus 320 ~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~----------~~v~~~~~~s 388 (741)
T 2ecf_A 320 ASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN----------WSVDELLAVD 388 (741)
T ss_dssp TTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS----------SCEEEEEEEE
T ss_pred CCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc----------eEEEeEeEEe
Confidence 99887543322 11 34678999999988888888887887765 344 66666554 566676 599
Q ss_pred CCCCEEEEee-cCc--eEEEEEcCC-CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 456 HDGGLVALRA-ENY--CIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 456 ~~~~~l~~~~-~dg--~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
|+++.|++.+ .++ .+++|++.. +.....+.. ...+..++|+|||++|+...... ..-..+
T Consensus 389 ~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-----------~~~~~~~~~spdg~~l~~~~~~~-----~~p~~~ 452 (741)
T 2ecf_A 389 EKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-----------APGMHSASFARNASVYVDSWSNN-----STPPQI 452 (741)
T ss_dssp TTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-----------SCSEEEEEECTTSSEEEEEEEET-----TEEEEE
T ss_pred CCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-----------CCCceEEEECCCCCEEEEEecCC-----CCCCeE
Confidence 9999876554 444 889998864 333333321 23467999999999998875310 022578
Q ss_pred EEEEecCC
Q 040987 532 KFWVSGTQ 539 (762)
Q Consensus 532 ~iwd~~~~ 539 (762)
.+|+....
T Consensus 453 ~l~~~~~~ 460 (741)
T 2ecf_A 453 ELFRANGE 460 (741)
T ss_dssp EEEETTSC
T ss_pred EEEEcCCC
Confidence 88887543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-27 Score=244.09 Aligned_cols=240 Identities=17% Similarity=0.120 Sum_probs=187.2
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC---eEEEEeccCCceeeccccccccccccccc
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG---RILIWRGFGDRTFATNDNKMNLNLMNNEE 332 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 332 (762)
+.|++||+..... ..+..|...+.+++|+|||++|++++.++ .|++||+.+++.
T Consensus 159 ~~i~i~d~~g~~~------~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~----------------- 215 (415)
T 2hqs_A 159 YELRVSDYDGYNQ------FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------------- 215 (415)
T ss_dssp EEEEEEETTSCSC------EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-----------------
T ss_pred ceEEEEcCCCCCC------EEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-----------------
Confidence 7999999986443 45667889999999999999999998875 999999977642
Q ss_pred CCCCcccCCccccceeeeccccceeEEEEecCCCEEE-EEecCC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE
Q 040987 333 ERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY-SGGKEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS 409 (762)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l 409 (762)
..+..|...+.+++|+|||++|+ +++.++ .|++||+.+++...+..+...+.+++|+|||++|
T Consensus 216 --------------~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l 281 (415)
T 2hqs_A 216 --------------RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNL 281 (415)
T ss_dssp --------------EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEE
T ss_pred --------------EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECCCCCEE
Confidence 34556778899999999999888 555554 5999999999888788888899999999999999
Q ss_pred EEEecC-C--cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceee
Q 040987 410 SISCAD-N--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISE 483 (762)
Q Consensus 410 ~~~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~ 483 (762)
++++.+ + .|++||+.+++.. .+..+. ..+..++|+|||++|++++.+ ..|++||+.+++.. .
T Consensus 282 ~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~----------~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~ 349 (415)
T 2hqs_A 282 AFTSDQAGRPQVYKVNINGGAPQ-RITWEG----------SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-V 349 (415)
T ss_dssp EEEECTTSSCEEEEEETTSSCCE-ECCCSS----------SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-E
T ss_pred EEEECCCCCcEEEEEECCCCCEE-EEecCC----------CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-E
Confidence 988763 4 6888899887643 333333 577899999999999988864 68999999887542 1
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+. . ...+.+++|+|||++|++++.+ +....|++||+.++. ...+ .+| .+.|.+++|
T Consensus 350 l~----~-------~~~~~~~~~spdg~~l~~~s~~------~~~~~l~~~d~~g~~-~~~l-----~~~-~~~v~~~~~ 405 (415)
T 2hqs_A 350 LS----S-------TFLDETPSLAPNGTMVIYSSSQ------GMGSVLNLVSTDGRF-KARL-----PAT-DGQVKFPAW 405 (415)
T ss_dssp CC----C-------SSSCEEEEECTTSSEEEEEEEE------TTEEEEEEEETTSCC-EEEC-----CCS-SSEEEEEEE
T ss_pred ec----C-------CCCcCCeEEcCCCCEEEEEEcC------CCccEEEEEECCCCc-EEEe-----eCC-CCCCcCCcc
Confidence 11 1 1257899999999999988731 012389999987543 3333 567 889999999
Q ss_pred cCCCC
Q 040987 564 HPNRR 568 (762)
Q Consensus 564 spd~~ 568 (762)
+|.-.
T Consensus 406 ~~~~~ 410 (415)
T 2hqs_A 406 SPYLH 410 (415)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 99643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=265.77 Aligned_cols=350 Identities=11% Similarity=0.033 Sum_probs=240.7
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc---ceeEEEEeCCCCcccceeeeEEeeecC--------
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA---PVTTVIVVPASTPATKILSYCWTASLD-------- 142 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~---~V~~v~~s~~~~~~~~l~~~l~s~s~d-------- 142 (762)
.+.+ ++|||||++++++.++.|++||+++++....+.+|.. .|.+++||||| ++|++++.+
T Consensus 18 ~~~~-~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg-------~~l~~~~~~~~~~~~~~ 89 (723)
T 1xfd_A 18 HDPE-AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-------EYALFSYNVEPIYQHSY 89 (723)
T ss_dssp CCCC-CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-------SEEEEEESCCCCSSSCC
T ss_pred cccc-cEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCC-------CEEEEEecCccceeecc
Confidence 3554 9999999988875589999999999999888888775 49999999999 677787764
Q ss_pred -CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 -GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 -~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
+.|.+||+.+++. ..+.
T Consensus 90 ~~~i~~~d~~~~~~-~~l~------------------------------------------------------------- 107 (723)
T 1xfd_A 90 TGYYVLSKIPHGDP-QSLD------------------------------------------------------------- 107 (723)
T ss_dssp CSEEEEEESSSCCC-EECC-------------------------------------------------------------
T ss_pred eeeEEEEECCCCce-Eecc-------------------------------------------------------------
Confidence 4555666665543 1110
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC------------------
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK------------------ 283 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------ 283 (762)
....+...+..++|||||++||.+.++.|++|++.+++.. .....+...
T Consensus 108 --------~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~-----~~~~~~~~~~~~~g~~~~v~~ee~~~~ 174 (723)
T 1xfd_A 108 --------PPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI-----RVVSTGKEGVIYNGLSDWLYEEEILKT 174 (723)
T ss_dssp --------CTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE-----EEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred --------CCccccccccccEECCCCCEEEEEECCeEEEEECCCCceE-----EEecCCCCCceECcccceeEEEEeccC
Confidence 1112344578899999999999888899999999987754 333333333
Q ss_pred eEEEEEcCCCcEEEEeecC-CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQRIVAAGDVT-GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
+.+++|||||++|++++.+ +.+.+|++.... ..+...+..+.|.
T Consensus 175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~ 219 (723)
T 1xfd_A 175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYT-----------------------------------GSIYPTVKPYHYP 219 (723)
T ss_dssp SEEEEECTTSSEEEEEEEECTTSCEEEECCCS-----------------------------------SSSSCCCEEEECC
T ss_pred cceEEECCCCCEEEEEEECCCccceEEeeccC-----------------------------------CcCCCcceeccCC
Confidence 3789999999999988765 467777763211 0122346778888
Q ss_pred cCCCEEEEEecCCeEEEEecCCCce-eccCCC------CCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEE
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRI------GSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRS 431 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~~~------~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~ 431 (762)
++|.. ..+..|++||+.+++. ..+..+ ...+..++|+|||+++++.... ..|++||+.+++....
T Consensus 220 ~~G~~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 220 KAGSE----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp BTTSC----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCC----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 88753 3446899999998875 333332 4578899999999988776543 4799999999887766
Q ss_pred EccCCCCCCCCCcccCce----eeEEEeCCCCEEEEe--ecCc------eEEEEEc-CCCCc--eeeEEeecccccCCCC
Q 040987 432 ISGIKLPCPLPEEYKGLC----RDIAFNHDGGLVALR--AENY------CIHFYSL-LDDRG--ISEVQVCERNHQPGDD 496 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v----~~~~~s~~~~~l~~~--~~dg------~i~i~d~-~~~~~--~~~~~~~~~~~~~~~~ 496 (762)
+..+.. +.+ ..++|+|||+.|+.. ..++ .|++||. .++.. ...+.. +
T Consensus 296 ~~~~~~---------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~---~------ 357 (723)
T 1xfd_A 296 HEDESE---------AWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS---G------ 357 (723)
T ss_dssp EEEECS---------SCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC---S------
T ss_pred EEeccC---------CEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec---C------
Confidence 543321 222 378999999988764 3555 5777773 33331 222211 0
Q ss_pred cceeEE-EEEEecCCCeEEEEeeeccccCCCce--eEEEEEEecCCCc--eeEEEEEeecCCCCCceEEEEEcCCCCeEE
Q 040987 497 VTVVVT-LVALSQDGSLMSTVDIKLAEEGIGSL--VCLKFWVSGTQNK--EFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571 (762)
Q Consensus 497 ~~~~v~-~~~~sp~g~~l~~~~~~~~~~~~~~d--~~i~iwd~~~~~~--~~~~~~~~~~~h~~~~v~~~~~spd~~~l~ 571 (762)
...+. .++|+|||+.|+..+. .+ +.+++|++..... ...+.. ...| ...+..++|+|||++|+
T Consensus 358 -~~~~~~~~~~spdg~~l~~~~~--------~~~~~~~~l~~~~~~~~~~~~~l~~--~~~~-~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 358 -DWDVTKILAYDEKGNKIYFLST--------EDLPRRRQLYSANTVGNFNRQCLSC--DLVE-NCTYFSASFSHSMDFFL 425 (723)
T ss_dssp -SSCEEEEEEEETTTTEEEEEES--------SSCTTCCEEEEECSSTTCCCBCSST--TSSS-SCCCCEEEECTTSSEEE
T ss_pred -CeEEEeeeEEcCCCCEEEEEEc--------CCCCcceEEEEEeCCCCCCcceecc--cccC-CCCeEEEEECCCCCEEE
Confidence 22233 4799999999987762 33 6789999875432 222210 0014 56788999999999888
Q ss_pred EEeC
Q 040987 572 SSSY 575 (762)
Q Consensus 572 ~~~~ 575 (762)
....
T Consensus 426 ~~~~ 429 (723)
T 1xfd_A 426 LKCE 429 (723)
T ss_dssp EECC
T ss_pred EEcc
Confidence 7543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-25 Score=251.75 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=223.9
Q ss_pred ccCCceeecCCCEEEEEe-CCEEEEEEcccceEE-eeecCCc-----------------cceeEEEEeCCCCcccceeee
Q 040987 75 VSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQI-SSLEGHK-----------------APVTTVIVVPASTPATKILSY 135 (762)
Q Consensus 75 v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~-~~l~~h~-----------------~~V~~v~~s~~~~~~~~l~~~ 135 (762)
+.. +.|+ |+.++++. ++ | +||+++|+.+ ..+..|. ..|.+++||||+ .+
T Consensus 28 ~~~-~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd~-------~~ 95 (706)
T 2z3z_A 28 VVG-LQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGRG-------LV 95 (706)
T ss_dssp CTT-CEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTTT-------EE
T ss_pred CCC-CcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCCC-------eE
Confidence 454 8899 55666666 46 8 9999999874 4454443 469999999995 55
Q ss_pred EEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCcccc
Q 040987 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGR 215 (762)
Q Consensus 136 l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~ 215 (762)
+++ .|++|++||+.+++.....
T Consensus 96 ~~~--~~~~i~~~d~~~~~~~~l~-------------------------------------------------------- 117 (706)
T 2z3z_A 96 VLF--TQGGLVGFDMLARKVTYLF-------------------------------------------------------- 117 (706)
T ss_dssp EEE--ETTEEEEEETTTTEEEEEE--------------------------------------------------------
T ss_pred EEE--ECCEEEEEECCCCceEEcc--------------------------------------------------------
Confidence 555 3599999999887643321
Q ss_pred EEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccC-----chhhhheeeeeeeccCcC-------
Q 040987 216 ICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPD-----VEAERVVMRKITLHHTKK------- 283 (762)
Q Consensus 216 i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~------- 283 (762)
.+...+..++|||||++||++.++.|++|++.+ ++.. .....+...
T Consensus 118 -----------------~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~-----~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 118 -----------------DTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAI-----AVTIDGTETLVYGQAV 175 (706)
T ss_dssp -----------------CCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCE-----ESCSCCBTTEEESSCC
T ss_pred -----------------CCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcE-----EeccCCCCCeEcccch
Confidence 123346678999999999988999999999998 6643 223333332
Q ss_pred -------eEEEEEcCCCcEEEEee---------------------------------cCCeEEEEeccCCceeecccccc
Q 040987 284 -------LTVLAFHPTQRIVAAGD---------------------------------VTGRILIWRGFGDRTFATNDNKM 323 (762)
Q Consensus 284 -------v~~~~~sp~~~~l~~~~---------------------------------~dg~v~vw~~~~~~~~~~~~~~~ 323 (762)
+.+++|||||++|++++ .+..|++||+.+++...
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~------ 249 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY------ 249 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE------
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe------
Confidence 48999999999999987 44679999987664321
Q ss_pred cccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-----eEEEEecCCC-ceeccC--CCC-
Q 040987 324 NLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG-----VLVVWQLDTG-KKKFLP--RIG- 394 (762)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg-----~i~~wd~~~~-~~~~~~--~~~- 394 (762)
+.....|...+..++|+|||++|++++.++ .|++||+.++ ....+. ...
T Consensus 250 ----------------------~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~ 307 (706)
T 2z3z_A 250 ----------------------LQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH 307 (706)
T ss_dssp ----------------------CCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred ----------------------eccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence 111124667789999999999999887765 8999999998 443222 111
Q ss_pred --CCeEEEEeCC--CCCeEEEEecCCcEEEEEcC-CceEEEEEccCCCCCCCCCcccCceee-EEEeCCCCEEEEeecC-
Q 040987 395 --SPLLYFTESP--DPSLSSISCADNQVHLLKMP-SMEIIRSISGIKLPCPLPEEYKGLCRD-IAFNHDGGLVALRAEN- 467 (762)
Q Consensus 395 --~~v~~~~~s~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~d- 467 (762)
..+..++|+| ||++++++..++.+++|+++ ++..+..+..+. ..+.. ++|+|+++.|++++.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~----------~~v~~~~~~spdg~~l~~~~~~~ 377 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGE----------WEVTNFAGFDPKGTRLYFESTEA 377 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSS----------SCEEEEEEECTTSSEEEEEESSS
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCC----------eEEEeeeEEcCCCCEEEEEecCC
Confidence 1246789999 99999998889989999876 566777776654 45665 7999999988766544
Q ss_pred c----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 468 Y----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 468 g----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+ .|+.||+.++. ...+. + ...+..++|+|||++++...... ...+.|++||+.+++
T Consensus 378 ~~~~~~l~~~d~~~~~-~~~l~-----~------~~~~~~~~~spdg~~l~~~~~~~-----~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 378 SPLERHFYCIDIKGGK-TKDLT-----P------ESGMHRTQLSPDGSAIIDIFQSP-----TVPRKVTVTNIGKGS 437 (706)
T ss_dssp CTTCBEEEEEETTCCC-CEESC-----C------SSSEEEEEECTTSSEEEEEEECS-----SCSCEEEEEESSSCE
T ss_pred CCceEEEEEEEcCCCC-ceecc-----C------CCceEEEEECCCCCEEEEEecCC-----CCCcEEEEEECCCCe
Confidence 3 67777877654 22221 1 34578999999999998875210 022579999998876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-25 Score=249.99 Aligned_cols=354 Identities=10% Similarity=0.047 Sum_probs=231.8
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCce--eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT--FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+..+.|+ |+.+++++.++ | +||+.+++. ............++.. + .....+...|.+++|
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~------------~--~~~~~~~~~v~~~~~ 89 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEG------------C--KFQTTDAFPSFRTLD 89 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-------------------------CCCEEEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccch------------h--ccccccccCceeEEE
Confidence 4457777 55667777777 8 999987754 2110000000000000 0 000112256999999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-----ceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-----MEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-----~~~~~~~~~~~ 436 (762)
+|| +.++.+. ++.|++||+.+++...+..+...+.+++|||||++|+++ .++.|++|++.+ ++.........
T Consensus 90 spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 90 AGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp TTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred CCC-CeEEEEE-CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 999 6666554 599999999999887776677788899999999999985 789999999998 77665443332
Q ss_pred CCC----CCCCcccCceeeEEEeCCCCEEEEee---------------------------------cCceEEEEEcCCCC
Q 040987 437 LPC----PLPEEYKGLCRDIAFNHDGGLVALRA---------------------------------ENYCIHFYSLLDDR 479 (762)
Q Consensus 437 ~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~i~d~~~~~ 479 (762)
... .........+.+++|+|||++|++++ .+..|++||+.+++
T Consensus 167 ~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~ 246 (706)
T 2z3z_A 167 ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK 246 (706)
T ss_dssp TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE
T ss_pred CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc
Confidence 100 00000002258899999999999987 44789999998775
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
...... . ..+...+..++|+|||++|++++.+ .......|++||+.+++....+........ ...+.
T Consensus 247 ~~~~~~--~------~~~~~~~~~~~~spdg~~l~~~~~~----~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~-~~~~~ 313 (706)
T 2z3z_A 247 TVYLQT--G------EPKEKFLTNLSWSPDENILYVAEVN----RAQNECKVNAYDAETGRFVRTLFVETDKHY-VEPLH 313 (706)
T ss_dssp EEECCC--C------SCTTCEEEEEEECTTSSEEEEEEEC----TTSCEEEEEEEETTTCCEEEEEEEEECSSC-CCCCS
T ss_pred eEeecc--C------CCCceeEeeEEEECCCCEEEEEEeC----CCCCeeEEEEEECCCCceeeEEEEccCCCe-ECccC
Confidence 322111 0 1125679999999999999987631 111335999999998844333322110111 12346
Q ss_pred EEEEcC--CCCeEEEEeCCCcEEEEEcc-cccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEEEEc--CC----
Q 040987 560 AVAFHP--NRRAAVSSSYGGDFKVWICN-DELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLAVAA--ET---- 629 (762)
Q Consensus 560 ~~~~sp--d~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la~~~--d~---- 629 (762)
+++|+| ||+++++++.|+.++||++. ++.....+ ..+...+.. ++|+|||+.|+.++ ++
T Consensus 314 ~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l-----------~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 314 PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQV-----------TKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp CCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEEC-----------CCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred CceeecCCCCEEEEEEccCCccEEEEEECCCCEEEec-----------CCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 789999 99999999999999999886 33333322 234556766 89999999887664 44
Q ss_pred eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC--CCeEEEEECCCCc
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS--KPQLSVWNMSKLS 684 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~--~~~v~vwd~~~~~ 684 (762)
.|+.||+.+++ ...+. |...+.+++|||||++|++.+.+. .+.|++||+.+++
T Consensus 383 ~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 383 HFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp EEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 77888888776 34444 667799999999999998875442 1359999999887
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-25 Score=253.40 Aligned_cols=352 Identities=14% Similarity=0.081 Sum_probs=237.5
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc---ceeE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS---EVSV 358 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~ 358 (762)
..+.+++|+|||+++++ +.||.|++||+.+++.. ..+..|.. .|.+
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~------------------------------~~~~~~~~~~~~v~~ 65 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST------------------------------VLIEGKKIESLRAIR 65 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE------------------------------EEECTTTTTTTTCSE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE------------------------------EEeccccccccccce
Confidence 34678999999997766 68999999999776432 33444443 4899
Q ss_pred EEEecCCCEEEEEecC---------CeEEEEecCCCceeccCC---CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 359 LIFSSDGAYLYSGGKE---------GVLVVWQLDTGKKKFLPR---IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~d---------g~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
++|+|||++|++++.+ +.+++||+.+++...+.. +...+..++|||||+.|++++. +.|++||+.++
T Consensus 66 ~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g 144 (723)
T 1xfd_A 66 YEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGK 144 (723)
T ss_dssp EEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSS
T ss_pred EEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCC
Confidence 9999999999998764 789999999988644433 3334888999999999999865 79999999998
Q ss_pred eEEEEEccCCCCCCC---C-----CcccCceeeEEEeCCCCEEEEeecCc------------------------------
Q 040987 427 EIIRSISGIKLPCPL---P-----EEYKGLCRDIAFNHDGGLVALRAENY------------------------------ 468 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~---~-----~~~~~~v~~~~~s~~~~~l~~~~~dg------------------------------ 468 (762)
+.......+...... . +...+.+.+++|+|||++|++++.++
T Consensus 145 ~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 224 (723)
T 1xfd_A 145 QAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSE 224 (723)
T ss_dssp CCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSC
T ss_pred ceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCC
Confidence 877665543311000 0 00001237899999999999987553
Q ss_pred ----eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 469 ----CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 469 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
.|++||+.+++....+.... ....+...+..++|+|||+++++...+ ...+..|++||+.+++....
T Consensus 225 ~~~~~l~~~d~~~~~~~~~l~~~~----~~~~~~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 225 NPSISLHVIGLNGPTHDLEMMPPD----DPRMREYYITMVKWATSTKVAVTWLNR-----AQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp CCEEEEEEEESSSSCCCEECCCCC----CGGGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEEEEEETTTCCEEEE
T ss_pred CCeeEEEEEECCCCceeEEeeCCc----cCCCccceeEEEEEeCCCeEEEEEEcC-----CCCeEEEEEEeCCCCcceEE
Confidence 78999998876433332110 000114678999999999998776521 11457899999998875544
Q ss_pred EEEEeecCCCCCce----EEEEEcCCCCeEEEE--eCCC------cEEEEE-cccccc--cccccCCceeeeeecccCCC
Q 040987 545 LSTIVYEPHRDAGI----SAVAFHPNRRAAVSS--SYGG------DFKVWI-CNDELQ--QKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 545 ~~~~~~~~h~~~~v----~~~~~spd~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~~~~~~~~~ 609 (762)
+.. .+ ...+ ..++|+|||+.|+.. ..++ .|++|| ..++.. ...+ ..+..
T Consensus 296 ~~~----~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l-----------~~~~~ 359 (723)
T 1xfd_A 296 HED----ES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI-----------TSGDW 359 (723)
T ss_dssp EEE----EC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS-----------CCSSS
T ss_pred EEe----cc-CCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe-----------ecCCe
Confidence 321 22 3333 378999999988764 4566 466677 333330 2222 11223
Q ss_pred CeEE-EEEcCCCcEEEEEc--C--CeEEEEeCCCC--eEEEEecc---ccCceeEEEEeCCCCEEEEEEcC-CCCeEEEE
Q 040987 610 AMTA-AAFSADGSVLAVAA--E--TVITLWDPDRN--VLVAVIGE---TLTPIMNMSFVGSSEYLVATSWG-SKPQLSVW 678 (762)
Q Consensus 610 ~i~~-~~~s~dg~~la~~~--d--~~i~iwd~~~~--~~~~~l~~---~~~~v~~~~~s~dg~~l~s~~~d-~~~~v~vw 678 (762)
.+.. ++|||||+.|+..+ + +.++||++... .....+.. |...+..++|+|||++|+..... ......++
T Consensus 360 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~ 439 (723)
T 1xfd_A 360 DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVH 439 (723)
T ss_dssp CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEE
T ss_pred EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEE
Confidence 3444 69999999997664 4 78999988643 23344543 56678999999999998876432 21125566
Q ss_pred ECCCCceeeEEE
Q 040987 679 NMSKLSISWSYL 690 (762)
Q Consensus 679 d~~~~~~~~~~~ 690 (762)
+..++..+..+.
T Consensus 440 ~~~~~~~~~~~~ 451 (723)
T 1xfd_A 440 NTTDKKKMFDLE 451 (723)
T ss_dssp ETTTCCEEEEEE
T ss_pred ECCCCCEEEEec
Confidence 776666555443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=217.49 Aligned_cols=281 Identities=14% Similarity=0.116 Sum_probs=203.0
Q ss_pred EEecCCCE-EEEEecCCeEEEEecCCCceeccCC-CCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCceE-EEEEccC
Q 040987 360 IFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPR-IGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEI-IRSISGI 435 (762)
Q Consensus 360 ~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~-~~~~~~~ 435 (762)
.|.+++++ +++.+.++.|.+||..+++...... ..... .++|+|+|+++++++. ++.|.+||+.+++. ...+..+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 82 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG 82 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence 45555555 6677788999999999998854333 33445 9999999997777666 88999999999887 6666554
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCc---eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY---CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
. ....+++|+|+++++++...++ .|.+||+.+++.+..+.. ...+..++|+|||++
T Consensus 83 ~----------~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~spdg~~ 141 (331)
T 3u4y_A 83 Q----------SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----------PYDAVGIAISPNGNG 141 (331)
T ss_dssp S----------SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----------CTTEEEEEECTTSSC
T ss_pred C----------CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----------CCCccceEECCCCCE
Confidence 4 3334499999999999655553 899999998876655433 233689999999997
Q ss_pred EEEEeeeccccCCCceeE-EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccc-
Q 040987 513 MSTVDIKLAEEGIGSLVC-LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQ- 589 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~- 589 (762)
+++++. .++. |.+|++............. ... ......++|+|||+++++++ .++.|++||+.+++.
T Consensus 142 l~~~~~--------~~~~~i~~~~~~~~g~~~~~~~~~-~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 142 LILIDR--------SSANTVRRFKIDADGVLFDTGQEF-ISG-GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENI 211 (331)
T ss_dssp EEEEEE--------TTTTEEEEEEECTTCCEEEEEEEE-ECS-SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSC
T ss_pred EEEEec--------CCCceEEEEEECCCCcEeecCCcc-ccC-CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCccc
Confidence 777653 4456 9999998765543332111 133 44688999999999665554 688999999988776
Q ss_pred --cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeE--EEEeccc----cCc---eeEEE
Q 040987 590 --QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVL--VAVIGET----LTP---IMNMS 656 (762)
Q Consensus 590 --~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~--~~~l~~~----~~~---v~~~~ 656 (762)
...++ ....+..++|+|||++|++++ ++.|.+||+.+++. +..+..+ ..+ ...++
T Consensus 212 ~~~~~~~------------~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (331)
T 3u4y_A 212 TLLNAVG------------TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMA 279 (331)
T ss_dssp EEEEEEE------------CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEE
T ss_pred ceeeecc------------CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceE
Confidence 33331 246678899999999887765 78899999999877 4433322 222 35589
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|+|||++|++++.++ +.|.+||+.+...
T Consensus 280 ~spdg~~l~v~~~~~-~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 280 LNKTETKLFISANIS-RELKVFTISGKVV 307 (331)
T ss_dssp ECTTSSEEEEEETTT-TEEEEEETTSCEE
T ss_pred ECCCCCEEEEecCCC-CcEEEEEecCCcc
Confidence 999999998877655 2499999987543
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-23 Score=209.84 Aligned_cols=288 Identities=9% Similarity=0.006 Sum_probs=199.9
Q ss_pred EEcCCCcE-EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCC
Q 040987 288 AFHPTQRI-VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366 (762)
Q Consensus 288 ~~sp~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 366 (762)
.|.+++++ +++.+.++.|.+||..+++.. ..+..+...+ .++|+|+|+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~------------------------------~~~~~~~~~~-~~~~s~dg~ 52 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEIL------------------------------NQITLGYDFV-DTAITSDCS 52 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEE------------------------------EEEECCCCEE-EEEECSSSC
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccccee------------------------------eeEEccCCcc-eEEEcCCCC
Confidence 45565554 667778999999999877543 3333445556 999999999
Q ss_pred EEEEEec-CCeEEEEecCCCce-eccC-CCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCC
Q 040987 367 YLYSGGK-EGVLVVWQLDTGKK-KFLP-RIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 367 ~l~s~~~-dg~i~~wd~~~~~~-~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
++++++. ++.|.+||..+++. .... .+..+..+++|+|+|++++++..++ .|.+||+.+++.+..+...
T Consensus 53 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~----- 127 (331)
T 3u4y_A 53 NVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP----- 127 (331)
T ss_dssp EEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-----
T ss_pred EEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-----
Confidence 7777665 78999999999886 4333 3334444499999999999554443 8999999999988877653
Q ss_pred CCCcccCceeeEEEeCCCCEEEEee-cCce-EEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRA-ENYC-IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
.....++|+|||++++++. .++. +.+|++.....+.......... ...+..++|+|||+++++++.
T Consensus 128 ------~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~------~~~~~~~~~spdg~~l~v~~~ 195 (331)
T 3u4y_A 128 ------YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG------GTRPFNITFTPDGNFAFVANL 195 (331)
T ss_dssp ------TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS------SSSEEEEEECTTSSEEEEEET
T ss_pred ------CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC------CCCccceEECCCCCEEEEEeC
Confidence 3458999999998666654 4477 9999998655443322110000 334789999999997766652
Q ss_pred eccccCCCceeEEEEEEecCCCc---eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccccccccccc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNK---EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQ 594 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 594 (762)
.++.|.+||+.+++. ...+. . ...+..++|+|||+++++++ .++.|.+||+.+++......
T Consensus 196 --------~~~~v~v~d~~~~~~~~~~~~~~------~-~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~ 260 (331)
T 3u4y_A 196 --------IGNSIGILETQNPENITLLNAVG------T-NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKS 260 (331)
T ss_dssp --------TTTEEEEEECSSTTSCEEEEEEE------C-SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEE
T ss_pred --------CCCeEEEEECCCCcccceeeecc------C-CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecc
Confidence 578999999998887 44332 2 45678899999999776665 46789999998876622110
Q ss_pred CCceeeee-ecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeE
Q 040987 595 SSGWSCHA-VGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVL 641 (762)
Q Consensus 595 ~~~~~~~~-~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~ 641 (762)
..... ...........++|+|||++|++++ ++.|.+||+.....
T Consensus 261 ---~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 261 ---FGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp ---EECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred ---cccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 00000 0011112235689999999987765 68999999987543
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-23 Score=208.87 Aligned_cols=304 Identities=13% Similarity=0.183 Sum_probs=202.1
Q ss_pred cEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 294 RIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 294 ~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
++++ +++.++.|++|++....... . .....|...+.+++|+|+|++|++++
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~---------------------------~-~~~~~~~~~~~~~~~spdg~~l~~~~ 56 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALT---------------------------L-TQVVDVPGQVQPMVVSPDKRYLYVGV 56 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEE---------------------------E-EEEEECSSCCCCEEECTTSSEEEEEE
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEE---------------------------E-eeeEecCCCCceEEECCCCCEEEEee
Confidence 3444 44779999999985321111 1 11234666788999999999999888
Q ss_pred cC-CeEEEEecC--CCceec--cCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcC---CceEEEEEccCCCCCCCCC
Q 040987 373 KE-GVLVVWQLD--TGKKKF--LPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMP---SMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 373 ~d-g~i~~wd~~--~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~---~~~~~~~~~~~~~~~~~~~ 443 (762)
.+ +.|.+|++. +++... .......+..++|+|+++++++++. ++.|.+||+. ..+....+..+
T Consensus 57 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-------- 128 (343)
T 1ri6_A 57 RPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-------- 128 (343)
T ss_dssp TTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC--------
T ss_pred cCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC--------
Confidence 76 899999998 555432 2222337889999999998877765 7889999994 34445554433
Q ss_pred cccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEE--eecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 444 EYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQ--VCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
..+.+++|+|+++++++++ .++.|++||+.+...+.... ...... ...+..++|+|+|+++++++.
T Consensus 129 ---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~pdg~~l~~~~~-- 197 (343)
T 1ri6_A 129 ---DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE------GAGPRHMVFHPNEQYAYCVNE-- 197 (343)
T ss_dssp ---TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST------TCCEEEEEECTTSSEEEEEET--
T ss_pred ---CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC------CCCcceEEECCCCCEEEEEeC--
Confidence 3578899999999888877 88999999998733232221 111100 345788999999998766652
Q ss_pred cccCCCceeEEEEEEecC--CCceeEEEEEe--ecCCC-CCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc--cccccc
Q 040987 521 AEEGIGSLVCLKFWVSGT--QNKEFTLSTIV--YEPHR-DAGISAVAFHPNRRAAVSSS-YGGDFKVWICND--ELQQKD 592 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~--~~~~~~~~~~~--~~~h~-~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~--~~~~~~ 592 (762)
.++.|.+|++.. +.... ..... ..++. ...+..++|+|+|++|+++. .++.|.+||+.. +.....
T Consensus 198 ------~~~~i~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~ 270 (343)
T 1ri6_A 198 ------LNSSVDVWELKDPHGNIEC-VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE 270 (343)
T ss_dssp ------TTTEEEEEESSCTTSCCEE-EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred ------CCCEEEEEEecCCCCcEEE-EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence 678999999964 33211 11111 11110 23567899999999877554 789999999983 221111
Q ss_pred ccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCCe--EEEEeccccCceeEEEEeCCCC
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRNV--LVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~~--~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
.....+ ..+..++|+|||++|++++ ++.|.+| |.++++ .+..+... ....+++|.++.+
T Consensus 271 ---------~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g-~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 271 ---------GFQPTE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVG-QGPMWVVVNAHEG 335 (343)
T ss_dssp ---------EEEECS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEEEEEEEECS-SSCCEEEEEEEC-
T ss_pred ---------eeecCC-CccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceeeEccccccC-CCCeeEEEEcccC
Confidence 111112 3388999999999888876 7999999 555664 34444432 3456788887644
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-23 Score=212.69 Aligned_cols=274 Identities=8% Similarity=-0.041 Sum_probs=205.2
Q ss_pred eEEEEecCCCeEEEEecCCcceeeeecCcc---cccCCceeecCCCEEEEEe--CCEEEEEEcccceEEeeecC-C----
Q 040987 44 FIFAVARSSGLCRTAEYPAVNSKMIRGGRS---YVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEG-H---- 113 (762)
Q Consensus 44 ~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~---~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~-h---- 113 (762)
.+++++..++.|.+||..+++......+.. .+.. ++|+|||++++++. ++.|.+||+.+++.+..+.. +
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~-~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMV-PMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCC-EEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccc-eEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 478888999999999999877765544333 4676 99999998876665 48999999999998877753 2
Q ss_pred ccceeEEEEeCCCCcccceeeeEEeee------------cCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccC
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTAS------------LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~s------------~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (762)
...+.+++|+|+| ++|++++ .++.|.+||+.+++.+..+..
T Consensus 81 ~~~~~~~~~s~dg-------~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-------------------- 133 (337)
T 1pby_B 81 VKSLFGAALSPDG-------KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-------------------- 133 (337)
T ss_dssp EECTTCEEECTTS-------SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC--------------------
T ss_pred cccccceEECCCC-------CEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC--------------------
Confidence 2368899999999 4666664 468899999887776544321
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIW 261 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iw 261 (762)
...+..++|+|||++|+++ ++.|.+|
T Consensus 134 -----------------------------------------------------~~~~~~~~~s~dg~~l~~~-~~~i~~~ 159 (337)
T 1pby_B 134 -----------------------------------------------------PRQITMLAWARDGSKLYGL-GRDLHVM 159 (337)
T ss_dssp -----------------------------------------------------CSSCCCEEECTTSSCEEEE-SSSEEEE
T ss_pred -----------------------------------------------------CCCcceeEECCCCCEEEEe-CCeEEEE
Confidence 2235678899999988876 7899999
Q ss_pred EccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-C-----------------------eEEEEeccCCceee
Q 040987 262 KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT-G-----------------------RILIWRGFGDRTFA 317 (762)
Q Consensus 262 d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g-----------------------~v~vw~~~~~~~~~ 317 (762)
|+.+++.. .....+. ....+.|+|++++++..+.. + .|.+||+.+++...
T Consensus 160 d~~~~~~~-----~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 233 (337)
T 1pby_B 160 DPEAGTLV-----EDKPIQS-WEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM 233 (337)
T ss_dssp ETTTTEEE-----EEECSTT-TTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE
T ss_pred ECCCCcEe-----eeeeccc-cCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE
Confidence 99987743 2222222 01133789999877654432 2 46788876654321
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCe
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL 397 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v 397 (762)
..+..+...+..++|+|||++++++ ++.|.+||+.+++..........+
T Consensus 234 -----------------------------~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~ 282 (337)
T 1pby_B 234 -----------------------------REVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSY 282 (337)
T ss_dssp -----------------------------EEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCC
T ss_pred -----------------------------eecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCce
Confidence 2334456678899999999999988 689999999998876555555678
Q ss_pred EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 398 LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 398 ~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
.+++|+|+|+++++++.++.|.+||+.+++.+..+....
T Consensus 283 ~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp CEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred eeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 899999999999999889999999999999888876543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=242.58 Aligned_cols=334 Identities=14% Similarity=0.050 Sum_probs=224.6
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc---ceeEEEEeCCCCcccceeeeEEeeec---------CCeE
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA---PVTTVIVVPASTPATKILSYCWTASL---------DGTI 145 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~---~V~~v~~s~~~~~~~~l~~~l~s~s~---------d~~i 145 (762)
.++|+|||++++++.++.|++||+++++....+.+|.. .|.+++||||| ++|++++. |++|
T Consensus 20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-------~~la~~~~~~~~~~~s~~~~i 92 (719)
T 1z68_A 20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-------QFVYLESDYSKLWRYSYTATY 92 (719)
T ss_dssp CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-------SEEEEEEEEEECSSSCEEEEE
T ss_pred ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-------CeEEEEecCceeEEeecceEE
Confidence 48999999877776689999999999998888876655 49999999999 56777765 5777
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
++||+.+++.+..
T Consensus 93 ~~~d~~~g~~~~~------------------------------------------------------------------- 105 (719)
T 1z68_A 93 YIYDLSNGEFVRG------------------------------------------------------------------- 105 (719)
T ss_dssp EEEETTTTEECCS-------------------------------------------------------------------
T ss_pred EEEECCCCccccc-------------------------------------------------------------------
Confidence 7787776653110
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeee-eccCcCe-----------------EEE
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKIT-LHHTKKL-----------------TVL 287 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v-----------------~~~ 287 (762)
. .. ...+..++|||||+.||.+.++.|++|++.+++.. ++. .++...| .++
T Consensus 106 -~-~l----~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~-----~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 106 -N-EL----PRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPF-----QITFNGRENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp -S-CC----CSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCE-----ECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred -e-ec----CcccccceECCCCCEEEEEECCeEEEEeCCCCCcE-----EEecCCCcCCeEcccccceeeeecccCcccE
Confidence 0 00 13467899999999999889999999999887653 222 2222222 489
Q ss_pred EEcCCCcEEEEeecCC----------------------------------eEEEEeccCCcee---eccccccccccccc
Q 040987 288 AFHPTQRIVAAGDVTG----------------------------------RILIWRGFGDRTF---ATNDNKMNLNLMNN 330 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg----------------------------------~v~vw~~~~~~~~---~~~~~~~~~~~~~~ 330 (762)
+|||||++||+++.|. .|++||+.+++.. ..
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~------------ 242 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEV------------ 242 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEEC------------
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEc------------
Confidence 9999999999987652 6677777654321 00
Q ss_pred ccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC----CeEEEEe----cCCCceeccC-----CCCCCe
Q 040987 331 EEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE----GVLVVWQ----LDTGKKKFLP-----RIGSPL 397 (762)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d----g~i~~wd----~~~~~~~~~~-----~~~~~v 397 (762)
.....+.+|...+..++|+||++.+++.... ..|.+|| +.+++...+. .+...+
T Consensus 243 -------------~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~ 309 (719)
T 1z68_A 243 -------------PVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWA 309 (719)
T ss_dssp -------------CCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCS
T ss_pred -------------cCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceE
Confidence 0002244677889999999998777664432 3588999 8887765544 445555
Q ss_pred E-----EEEeCCCCCeEEE--EecCC--cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-
Q 040987 398 L-----YFTESPDPSLSSI--SCADN--QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN- 467 (762)
Q Consensus 398 ~-----~~~~s~~~~~l~~--~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d- 467 (762)
. .+.|+|||+.++. ...++ .|.+|++.+++ ...+..+. ..+..+.+. +++.|+..+.+
T Consensus 310 ~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~----------~~v~~~~~~-d~~~i~~~~~~~ 377 (719)
T 1z68_A 310 GGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK----------WEAINIFRV-TQDSLFYSSNEF 377 (719)
T ss_dssp SSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS----------SCEEEEEEE-CSSEEEEEESCG
T ss_pred ccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc----------eEEEEEEEE-eCCEEEEEEecC
Confidence 5 7899999997665 33444 57777877665 34444332 456677777 88887777654
Q ss_pred ----ceEEEEEcCC--CCc-eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 468 ----YCIHFYSLLD--DRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 468 ----g~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
+..++|.+.. +.. ...+.... .++...+..+.|+||+++++..... . ....+.+||+.+++
T Consensus 378 ~~~~~~~~l~~~~~~~g~~~~~~l~~~~------~~~~~~~~~~~~s~dg~~l~~~~s~---~---~~p~~~l~d~~~g~ 445 (719)
T 1z68_A 378 EEYPGRRNIYRISIGSYPPSKKCVTCHL------RKERCQYYTASFSDYAKYYALVCYG---P---GIPISTLHDGRTDQ 445 (719)
T ss_dssp GGCTTCBEEEEEECSSSSCCEEESSTTT------TTTTBCBEEEEECGGGSSEEEEECC---B---SSCEEEEECSSSCC
T ss_pred CCCCceEEEEEEeCCCCCCCceeccCcc------CCCCCceEEEEECCCCCEEEEEcCC---C---CCCeEEEEECCCCC
Confidence 7788887754 221 11111000 0013457789999999988865421 0 22468899988776
Q ss_pred ceeEE
Q 040987 541 KEFTL 545 (762)
Q Consensus 541 ~~~~~ 545 (762)
....+
T Consensus 446 ~~~~~ 450 (719)
T 1z68_A 446 EIKIL 450 (719)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54333
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-22 Score=207.40 Aligned_cols=283 Identities=15% Similarity=0.149 Sum_probs=193.5
Q ss_pred EEEEecCCeEEEEecC-CCce--eccCCCCCCeEEEEeCCCCCeEEEEecC-CcEEEEEcC--Cce--EEEEEccCCCCC
Q 040987 368 LYSGGKEGVLVVWQLD-TGKK--KFLPRIGSPLLYFTESPDPSLSSISCAD-NQVHLLKMP--SME--IIRSISGIKLPC 439 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~-~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~~i~i~d~~--~~~--~~~~~~~~~~~~ 439 (762)
+++++.++.|++||+. +++. .....+...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+...
T Consensus 8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---- 83 (343)
T 1ri6_A 8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP---- 83 (343)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS----
T ss_pred EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC----
Confidence 3444778999999995 3332 3334566678899999999999888876 899999997 444 33334322
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+..++|+|+++++++++. ++.|.+||+..+........... ...+.+++|+|+|+++++++.
T Consensus 84 -------~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~s~dg~~l~~~~~ 148 (343)
T 1ri6_A 84 -------GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------LDGCHSANISPDNRTLWVPAL 148 (343)
T ss_dssp -------SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--------CTTBCCCEECTTSSEEEEEEG
T ss_pred -------CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC--------CCCceEEEECCCCCEEEEecC
Confidence 35688999999998877664 78999999963322222211111 234778999999998887763
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEE-EeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc--cccccccc
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLST-IVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICND--ELQQKDLQ 594 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~--~~~~~~~~ 594 (762)
.++.|.+||+.+......... ...... ...+..++|+|+++++++++ .++.+.+|++.. +......
T Consensus 149 --------~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~- 218 (343)
T 1ri6_A 149 --------KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ- 218 (343)
T ss_dssp --------GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE-
T ss_pred --------CCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEe-
Confidence 578999999987333222210 111222 45788999999999776555 789999999954 3221110
Q ss_pred CCceeeeeecc---cCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCC--C--CeEEEEeccccCceeEEEEeCCCCEEE
Q 040987 595 SSGWSCHAVGS---YKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPD--R--NVLVAVIGETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 595 ~~~~~~~~~~~---~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~--~--~~~~~~l~~~~~~v~~~~~s~dg~~l~ 665 (762)
...... .....+..++|+|||++|+++ . ++.|.+||+. + .+.+..+..+.. +..++|+|||++|+
T Consensus 219 -----~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~ 292 (343)
T 1ri6_A 219 -----TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLI 292 (343)
T ss_dssp -----EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEE
T ss_pred -----eccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEE
Confidence 000011 113467789999999988755 4 8999999998 3 355555654444 88999999999999
Q ss_pred EEE-cCCCCeEEEEEC--CCCceee
Q 040987 666 ATS-WGSKPQLSVWNM--SKLSISW 687 (762)
Q Consensus 666 s~~-~d~~~~v~vwd~--~~~~~~~ 687 (762)
+++ .++. |.+|++ .++++..
T Consensus 293 ~~~~~~~~--v~v~~~d~~~g~~~~ 315 (343)
T 1ri6_A 293 AAGQKSHH--ISVYEIVGEQGLLHE 315 (343)
T ss_dssp EECTTTCE--EEEEEEETTTTEEEE
T ss_pred EecCCCCe--EEEEEEcCCCceeeE
Confidence 888 4666 999954 4665543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-23 Score=211.07 Aligned_cols=284 Identities=10% Similarity=-0.010 Sum_probs=214.7
Q ss_pred cccceeEEEEecCCCEEEEEec-------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEc
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGK-------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKM 423 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~ 423 (762)
....+..++|+|+++++++++. ++.|.+||..+++..........+..++++|+|++++++.. ++.|.+||.
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3456789999999999888773 56899999999987655555566788999999997665544 789999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++.+..+..+.... ........+.+++|+|++++++++. .++.|.+||..+++....+... ...+
T Consensus 119 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~ 187 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKR-TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----------GKMS 187 (353)
T ss_dssp TTCCEEEEEESCCCCC-CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----------CTTC
T ss_pred CCCeeEEEEecCCCcc-ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC----------CCcc
Confidence 9999888876543110 0000001367899999999888776 4788999999988766554311 2236
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFK 580 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~ 580 (762)
..++|+|+|+++++++ .++.|.+||..+++....+... ..++ ...+.+++|+|+++++++++. ++.|.
T Consensus 188 ~~~~~s~dg~~l~~~~---------~~~~i~~~d~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~ 256 (353)
T 3vgz_A 188 TGLALDSEGKRLYTTN---------ADGELITIDTADNKILSRKKLL-DDGK-EHFFINISLDTARQRAFITDSKAAEVL 256 (353)
T ss_dssp CCCEEETTTTEEEEEC---------TTSEEEEEETTTTEEEEEEECC-CSSS-CCCEEEEEEETTTTEEEEEESSSSEEE
T ss_pred ceEEECCCCCEEEEEc---------CCCeEEEEECCCCeEEEEEEcC-CCCC-CcccceEEECCCCCEEEEEeCCCCEEE
Confidence 7789999999999988 7789999999988766554321 1123 456888999999998777665 48999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
+||..+++...... ......++|+|||+++++++ ++.|.+||..+++.+..+..+ ..+.+++|+
T Consensus 257 ~~d~~~~~~~~~~~-------------~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s 322 (353)
T 3vgz_A 257 VVDTRNGNILAKVA-------------APESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-THPNSLALS 322 (353)
T ss_dssp EEETTTCCEEEEEE-------------CSSCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-SEEEEEEEC
T ss_pred EEECCCCcEEEEEE-------------cCCCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-CCCCeEEEc
Confidence 99998887665542 11125699999999766654 899999999999998888654 467899999
Q ss_pred CCCCEEEEEEcCC
Q 040987 659 GSSEYLVATSWGS 671 (762)
Q Consensus 659 ~dg~~l~s~~~d~ 671 (762)
|||++|+.+..++
T Consensus 323 ~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 323 ADGKTLYVSVKQK 335 (353)
T ss_dssp TTSCEEEEEEECC
T ss_pred CCCCEEEEEEccc
Confidence 9999888877664
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-22 Score=208.81 Aligned_cols=283 Identities=8% Similarity=0.065 Sum_probs=211.7
Q ss_pred cccccCCceeecCCCEEEEEe--------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT--------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG 143 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~--------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~ 143 (762)
...+.. ++|+|||++|+++. ++.|.+||.++++.+..+... ..+..++|+|+|+ .++++...++
T Consensus 40 ~~~~~~-~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~------~l~v~~~~~~ 111 (353)
T 3vgz_A 40 GKGAYE-MAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQ------TLWFGNTVNS 111 (353)
T ss_dssp ESSEEE-EEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTT------EEEEEETTTT
T ss_pred ccCccc-eEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCC------EEEEEecCCC
Confidence 344555 99999999999888 458999999999998888643 4588999999994 3556667789
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
.|.+||..+++.+..+..+....
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~--------------------------------------------------------- 134 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKR--------------------------------------------------------- 134 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCC---------------------------------------------------------
T ss_pred EEEEEeCCCCeeEEEEecCCCcc---------------------------------------------------------
Confidence 99999999998877665321000
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD 300 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 300 (762)
........+.+++|+|||++++++. ++.|.+||..+++.. .....+...+.+++|+|++++|++++
T Consensus 135 ------~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~-----~~~~~~~~~~~~~~~s~dg~~l~~~~ 203 (353)
T 3vgz_A 135 ------TEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLK-----TAIQNTGKMSTGLALDSEGKRLYTTN 203 (353)
T ss_dssp ------CSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEE-----EEECCCCTTCCCCEEETTTTEEEEEC
T ss_pred ------ccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceE-----EEecCCCCccceEEECCCCCEEEEEc
Confidence 0000112356789999999887543 788999999988753 33333555688999999999999999
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~ 379 (762)
.++.|.+||..+++...... ..-.++...+..++|+|+|++++.++.+ +.|.+
T Consensus 204 ~~~~i~~~d~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~ 257 (353)
T 3vgz_A 204 ADGELITIDTADNKILSRKK--------------------------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLV 257 (353)
T ss_dssp TTSEEEEEETTTTEEEEEEE--------------------------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEE
T ss_pred CCCeEEEEECCCCeEEEEEE--------------------------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEE
Confidence 99999999998775442110 0011245567889999999987776654 89999
Q ss_pred EecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 380 WQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 380 wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
||..+++.........+ ..++|+|+|++++++. .++.|.+||..+++.+..+... ..+..++|+||+
T Consensus 258 ~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg 325 (353)
T 3vgz_A 258 VDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP-----------THPNSLALSADG 325 (353)
T ss_dssp EETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC-----------SEEEEEEECTTS
T ss_pred EECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC-----------CCCCeEEEcCCC
Confidence 99999887543333333 5689999999777666 5899999999999988887653 367899999999
Q ss_pred CEEEEeecCc
Q 040987 459 GLVALRAENY 468 (762)
Q Consensus 459 ~~l~~~~~dg 468 (762)
++|+++..++
T Consensus 326 ~~l~v~~~~~ 335 (353)
T 3vgz_A 326 KTLYVSVKQK 335 (353)
T ss_dssp CEEEEEEECC
T ss_pred CEEEEEEccc
Confidence 9888776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=214.68 Aligned_cols=280 Identities=11% Similarity=0.037 Sum_probs=210.9
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+++++++.++.|.+||..+++......... .+..++|+|+|+.++++ ..++.|.+||+.+++.+..+......
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~--- 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE--- 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence 478899999999999999988765444444 57889999999876554 45789999999999888776532100
Q ss_pred CCcccCceeeEEEeCCCCEEEEee------------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRA------------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+...+..++|+|++++++++. .++.|.+||+.+++....+.. ...+..++|+|+
T Consensus 79 --~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----------~~~~~~~~~s~d 145 (337)
T 1pby_B 79 --ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD 145 (337)
T ss_dssp --EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT
T ss_pred --cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-----------CCCcceeEECCC
Confidence 0012567899999999998886 578999999988766555433 223667899999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC------------
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG------------ 577 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg------------ 577 (762)
|++|++++ +.|.+||+.+++....+.. ..+ .. .+.|+||++.++..+.++
T Consensus 146 g~~l~~~~-----------~~i~~~d~~~~~~~~~~~~---~~~-~~---~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~ 207 (337)
T 1pby_B 146 GSKLYGLG-----------RDLHVMDPEAGTLVEDKPI---QSW-EA---ETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp SSCEEEES-----------SSEEEEETTTTEEEEEECS---TTT-TT---TTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred CCEEEEeC-----------CeEEEEECCCCcEeeeeec---ccc-CC---CceeCCCccEEeeeccCCCceeeeeecccc
Confidence 99888875 4799999998876544421 111 12 237899998776554332
Q ss_pred ------------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 578 ------------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 578 ------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
.|.+||+.+++.. ... ...+...+.+++|+|||++++++ ++.|++||+.+++.+..+
T Consensus 208 ~~~~~~~~~~~~~v~~~d~~~~~~~-~~~---------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 208 DIDPADPTAYRTGLLTMDLETGEMA-MRE---------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEE-EEE---------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred ccccccccccccceEEEeCCCCCce-Eee---------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCccee
Confidence 3688999887654 221 12345678899999999999888 899999999999988877
Q ss_pred ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 646 GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..+ ..+.+++|+|||++|++++.++. |.+||+.+++.+..+..+.
T Consensus 277 ~~~-~~~~~~~~s~dg~~l~~~~~~~~--i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 277 PLP-HSYYSVNVSTDGSTVWLGGALGD--LAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp ECS-SCCCEEEECTTSCEEEEESBSSE--EEEEETTTCCEEEEEECGG
T ss_pred cCC-CceeeEEECCCCCEEEEEcCCCc--EEEEECcCCcEEEEEEcCC
Confidence 643 46789999999999999988877 9999999999988776653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=206.79 Aligned_cols=253 Identities=13% Similarity=0.016 Sum_probs=194.2
Q ss_pred ecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeCCEEEEEEccc-ceEEeeecCC-ccceeEEEEeCCC
Q 040987 49 ARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTST-GLQISSLEGH-KAPVTTVIVVPAS 126 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~-~~~~~~l~~h-~~~V~~v~~s~~~ 126 (762)
++.++.|++||..+++...+..|...|.+ ++|||||++||++.++.|.+||+++ ++....+.+| ...|.+++|+|++
T Consensus 18 ~~~~~~i~~~d~~~~~~~~~~~~~~~v~~-~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 96 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRVVWQTPELFEA-PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDG 96 (297)
T ss_dssp CCCCEEEEEEETTTTEEEEEEEESSCCEE-EEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTS
T ss_pred CCcceeEEEEeCCCCceeeeccCCcceEe-eEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCC
Confidence 45789999999999999889999999997 9999999999999999999999999 8888777776 4789999999999
Q ss_pred CcccceeeeEEeee--cCCeEEEEeC--CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcC
Q 040987 127 TPATKILSYCWTAS--LDGTIKYWDF--SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202 (762)
Q Consensus 127 ~~~~~l~~~l~s~s--~d~~i~vWd~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (762)
++|++++ .++.++||.+ .+++. ..+
T Consensus 97 -------~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~------------------------------------------- 125 (297)
T 2ojh_A 97 -------ALYAISDKVEFGKSAIYLLPSTGGTP-RLM------------------------------------------- 125 (297)
T ss_dssp -------SEEEEEECTTTSSCEEEEEETTCCCC-EEC-------------------------------------------
T ss_pred -------CEEEEEEeCCCCcceEEEEECCCCce-EEe-------------------------------------------
Confidence 5777777 3455666654 33221 111
Q ss_pred CccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-E-EeCCeEEEEEccCchhhhheeeeeeecc
Q 040987 203 HKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-I-RKQRKLLIWKVPDVEAERVVMRKITLHH 280 (762)
Q Consensus 203 ~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~ 280 (762)
.+...+..++|+|||++|+ + ..++.+.||++...... ......+
T Consensus 126 ------------------------------~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~----~~~~~~~ 171 (297)
T 2ojh_A 126 ------------------------------TKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV----ETRLTHG 171 (297)
T ss_dssp ------------------------------CSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC----EEECCCS
T ss_pred ------------------------------ecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc----ceEcccC
Confidence 1122367789999999887 3 36898999986432211 1344567
Q ss_pred CcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
...+.+++|+|++++|++++ .++.+++|++.... .....+..|...+..+
T Consensus 172 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~-----------------------------~~~~~~~~~~~~~~~~ 222 (297)
T 2ojh_A 172 EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG-----------------------------SSVERITDSAYGDWFP 222 (297)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-----------------------------SCEEECCCCSEEEEEE
T ss_pred CCccccceECCCCCEEEEEecCCCCccEEEECCCC-----------------------------CCcEEEecCCcccCCe
Confidence 78899999999999888766 58899999875211 1234556677788999
Q ss_pred EEecCCCEEEEEecC-----------CeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 360 IFSSDGAYLYSGGKE-----------GVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d-----------g~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+|+|+|++|++++.+ +.|++||+.+++... ...+...+..++|+|++++|++++.+.
T Consensus 223 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 223 HPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred EECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 999999999988765 569999999887643 235677889999999999998887653
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=235.93 Aligned_cols=350 Identities=11% Similarity=0.012 Sum_probs=229.3
Q ss_pred EEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc---ceeEEEEe
Q 040987 286 VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS---EVSVLIFS 362 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~s 362 (762)
+++|+|||++++++ .|+.|++||+.+++.. ..+.+|.. .+.+++||
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~------------------------------~~~~~~~~~~~~~~~~~~S 68 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY------------------------------TILSNRTMKSVNASNYGLS 68 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEE------------------------------EEECHHHHHTTTCSEEEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE------------------------------EEEccccccccceeeEEEC
Confidence 78999999766554 6999999999877532 23333433 48899999
Q ss_pred cCCCEEEEEec---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 363 SDGAYLYSGGK---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 363 ~~g~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
|||++|++++. ++.|++||+.+++..........+..++|||||+.|+++ .++.|++|++.+++......
T Consensus 69 pDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 69 PDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp TTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCC
T ss_pred CCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEec
Confidence 99999998876 689999999998873212233568889999999999988 47899999999887654332
Q ss_pred cCCCCCCCCCccc---------CceeeEEEeCCCCEEEEeecCc----------------------------------eE
Q 040987 434 GIKLPCPLPEEYK---------GLCRDIAFNHDGGLVALRAENY----------------------------------CI 470 (762)
Q Consensus 434 ~~~~~~~~~~~~~---------~~v~~~~~s~~~~~l~~~~~dg----------------------------------~i 470 (762)
...... ....+. +...+++|+|||++|++++.|. .|
T Consensus 148 ~~~~~~-v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l 226 (719)
T 1z68_A 148 NGRENK-IFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRI 226 (719)
T ss_dssp CCBTTT-EEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEE
T ss_pred CCCcCC-eEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEE
Confidence 111000 000000 1125899999999999987652 78
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE----ecCCCceeEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV----SGTQNKEFTLS 546 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd----~~~~~~~~~~~ 546 (762)
++||+.+++....+...... ....+...+..++|+||++++++...+ ......|.+|| ..+++....+.
T Consensus 227 ~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~SpD~~~~~~~~~~-----~~~~~~l~~~d~~~~~~~g~~~~~~~ 299 (719)
T 1z68_A 227 FIIDTTYPAYVGPQEVPVPA--MIASSDYYFSWLTWVTDERVCLQWLKR-----VQNVSVLSICDFREDWQTWDCPKTQE 299 (719)
T ss_dssp EEEESSCHHHHCCEECCCCH--HHHTSCEEEEEEEESSSSEEEEEEEES-----STTEEEEEEEEECSSSSSEECCGGGE
T ss_pred EEEECCCCCccceeEccCCc--cCCCCcceEEEeEEeCCCeEEEEEecc-----ccCeEEEEEEcccCCCCCCceEEEEe
Confidence 89999876542111110000 000126678999999998877764421 01335788999 66655433221
Q ss_pred EEeecCCCCCceE-----EEEEcCCCCeEEE--EeCCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 547 TIVYEPHRDAGIS-----AVAFHPNRRAAVS--SSYGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 547 ~~~~~~h~~~~v~-----~~~~spd~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
....+| ...+. .++|+|||+.++. ...+| .|++||+.+++... + ..+...+..+.++
T Consensus 300 -~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~~~-l-----------t~~~~~v~~~~~~ 365 (719)
T 1z68_A 300 -HIEESR-TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENAIQ-I-----------TSGKWEAINIFRV 365 (719)
T ss_dssp -EEEECS-SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTCEE-C-----------SCSSSCEEEEEEE
T ss_pred -cccccC-CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCceEe-c-----------ccCceEEEEEEEE
Confidence 000245 55565 7899999997665 33455 46677776655222 2 1234567777777
Q ss_pred CCCcEEEEEc-C-----CeEEEEeCCC--Ce-EEEEec----cccCceeEEEEeCCCCEEEE-EEcCCCCeEEEEECCCC
Q 040987 618 ADGSVLAVAA-E-----TVITLWDPDR--NV-LVAVIG----ETLTPIMNMSFVGSSEYLVA-TSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 618 ~dg~~la~~~-d-----~~i~iwd~~~--~~-~~~~l~----~~~~~v~~~~~s~dg~~l~s-~~~d~~~~v~vwd~~~~ 683 (762)
+++.|+..+ + +..++|.+.. +. ....+. +|...+..+.|+||+++++. ++.+....+.+||+.++
T Consensus 366 -d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g 444 (719)
T 1z68_A 366 -TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD 444 (719)
T ss_dssp -CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred -eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence 888777665 5 7788887653 42 123332 25567889999999998875 44443345899999998
Q ss_pred ceeeEEE
Q 040987 684 SISWSYL 690 (762)
Q Consensus 684 ~~~~~~~ 690 (762)
+....+.
T Consensus 445 ~~~~~~~ 451 (719)
T 1z68_A 445 QEIKILE 451 (719)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 8655444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-23 Score=204.68 Aligned_cols=254 Identities=15% Similarity=0.085 Sum_probs=193.2
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccC-chhhhheeeeeeecc-CcCeE
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPD-VEAERVVMRKITLHH-TKKLT 285 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~-~~~v~ 285 (762)
..++.++.|.+||+.+++.. ....|...+.+++|+|||++|+++.++.|.+||+.+ ++.. .....+ ...+.
T Consensus 16 ~~~~~~~~i~~~d~~~~~~~--~~~~~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~-----~~~~~~~~~~~~ 88 (297)
T 2ojh_A 16 PGGSMRSSIEIFNIRTRKMR--VVWQTPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPE-----KVDTGFATICNN 88 (297)
T ss_dssp --CCCCEEEEEEETTTTEEE--EEEEESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCE-----ECCCTTCCCBCS
T ss_pred CCCCcceeEEEEeCCCCcee--eeccCCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCce-----Eecccccccccc
Confidence 34568899999999998876 556688999999999999999988899999999998 7643 334344 46789
Q ss_pred EEEEcCCCcEEEEee--cCCeEEEEec--cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 286 VLAFHPTQRIVAAGD--VTGRILIWRG--FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~--~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
+++|+|++++|++++ .++...||.+ .++. ...+..+. .+..++|
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-------------------------------~~~~~~~~-~~~~~~~ 136 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-------------------------------PRLMTKNL-PSYWHGW 136 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-------------------------------CEECCSSS-SEEEEEE
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-------------------------------eEEeecCC-CccceEE
Confidence 999999999999988 3345555554 3332 12233232 4888999
Q ss_pred ecCCCEEE-EEecCCeEEEEec--CCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcC-CceEEEEEccCC
Q 040987 362 SSDGAYLY-SGGKEGVLVVWQL--DTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMP-SMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~-s~~~dg~i~~wd~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~-~~~~~~~~~~~~ 436 (762)
+||+++|+ +++.++.+.+|++ .+++...+..+...+.+++|+|+++.+++++ .++.+.+|++. .+.....+..+.
T Consensus 137 spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 137 SPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp CTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred CCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 99999887 6778898888884 5566666777788899999999999888776 48889999886 455566665554
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecC-----------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
..+..++|+|++++|++++.+ +.|++||+.+++........ .+ ...+..++
T Consensus 217 ----------~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~--~~------~~~~~~~~ 278 (297)
T 2ojh_A 217 ----------YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF--GG------QGTMNSPN 278 (297)
T ss_dssp ----------EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE--ES------TTTSCSCC
T ss_pred ----------cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC--CC------Ccccccce
Confidence 678899999999999988765 67999999887653332221 11 34577889
Q ss_pred EecCCCeEEEEee
Q 040987 506 LSQDGSLMSTVDI 518 (762)
Q Consensus 506 ~sp~g~~l~~~~~ 518 (762)
|+|+|++|++++.
T Consensus 279 ~spdg~~l~~~~~ 291 (297)
T 2ojh_A 279 WSPDGDEFAYVRY 291 (297)
T ss_dssp BCTTSSEEEEEEE
T ss_pred ECCCCCEEEEEEe
Confidence 9999999998873
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=221.73 Aligned_cols=389 Identities=8% Similarity=0.021 Sum_probs=242.8
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEee
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVE 194 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (762)
....+++|+||| .+++++ |++|++||+.++++...+..+..
T Consensus 17 ~~~~~~~w~~dg-------~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------ 57 (740)
T 4a5s_A 17 LKLYSLRWISDH-------EYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------ 57 (740)
T ss_dssp CCCCCEEECSSS-------EEEEEE--TTEEEEEETTTCCEEEEECTTTT------------------------------
T ss_pred ccccccEECCCC-------cEEEEc--CCcEEEEECCCCceEEEEechhh------------------------------
Confidence 446789999999 688886 99999999999987655543210
Q ss_pred eccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeC----------CeEEEEEcc
Q 040987 195 DTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQ----------RKLLIWKVP 264 (762)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~----------~~i~iwd~~ 264 (762)
.........++|||||++|+.+.+ +.+.+||+.
T Consensus 58 -------------------------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~ 100 (740)
T 4a5s_A 58 -------------------------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN 100 (740)
T ss_dssp -------------------------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred -------------------------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence 001112345799999999986643 678899999
Q ss_pred CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccc
Q 040987 265 DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD 344 (762)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (762)
+++.. .+..|...+..++|||||+.||.+ .++.|++|++.+++..... .++.
T Consensus 101 ~~~~~------~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt---------------------~~g~ 152 (740)
T 4a5s_A 101 KRQLI------TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRIT---------------------WTGK 152 (740)
T ss_dssp TTEEC------CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECC---------------------SCCB
T ss_pred CCcEE------EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEc---------------------CCCC
Confidence 98753 345677789999999999999988 4789999999776543211 0111
Q ss_pred cceeeecccc---------ceeEEEEecCCCEEEEEecCCe-EEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec
Q 040987 345 LCTTWHWHPS---------EVSVLIFSSDGAYLYSGGKEGV-LVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA 414 (762)
Q Consensus 345 ~~~~~~~h~~---------~v~~~~~s~~g~~l~s~~~dg~-i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 414 (762)
....+.++.+ ....+.|||||++|+.++.|.+ +.+|++....... .+...+..+.+.+.|... .
T Consensus 153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~--~~~~~~~~~~yp~~G~~~----~ 226 (740)
T 4a5s_A 153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDES--LQYPKTVRVPYPKAGAVN----P 226 (740)
T ss_dssp TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTT--CSSCEEEEEECCBTTSCC----C
T ss_pred ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCC--CCCCcceeecCCCCcCcC----C
Confidence 1122333332 2345899999999999876544 7788764221110 233456677777766431 1
Q ss_pred CCcEEEEEcCC---ce--EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----CceEEEEEcCCCCc-----
Q 040987 415 DNQVHLLKMPS---ME--IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----NYCIHFYSLLDDRG----- 480 (762)
Q Consensus 415 d~~i~i~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~----- 480 (762)
...|++||+.+ ++ ....+..... ...+...+..++|+|||+.++.... +..|++||+.+++.
T Consensus 227 ~~~l~v~d~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 227 TVKFFVVNTDSLSSVTNATSIQITAPAS----MLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp EEEEEEEETTSCCSSSCCCEEEECCCHH----HHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred eeEEEEEECCCCCCCCcceEEEecCCcc----CCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 23689999998 73 2223322000 0002267899999999997766543 34799999998861
Q ss_pred -eeeEEeecccccCCCCccee-----EEEEEEecCCCeEE-EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 481 -ISEVQVCERNHQPGDDVTVV-----VTLVALSQDGSLMS-TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 481 -~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~-~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
...+.. ..+ ... ....+|+|||+.++ ..+.+ .+...|++||..++.... + ...
T Consensus 303 ~~~~l~~--~~~------~~~v~~~~~~~p~fspDG~~l~~~~s~~------~G~~~l~~~~~~~~~~~~-l-----T~g 362 (740)
T 4a5s_A 303 VARQHIE--MST------TGWVGRFRPSEPHFTLDGNSFYKIISNE------EGYRHICYFQIDKKDCTF-I-----TKG 362 (740)
T ss_dssp GGGCEEE--ECS------SSCSSSSSCCCCEECTTSSEEEEEEECT------TSCEEEEEEETTCSSCEE-S-----CCS
T ss_pred EEEEeee--ccC------CceEccCcCCCceEcCCCCEEEEEEEcC------CCceEEEEEECCCCceEe-c-----ccC
Confidence 111111 111 112 23678999999887 55421 145789999988765432 2 122
Q ss_pred CCCceEEEEEcCCCCeEEEEeCC-----C--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYG-----G--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~d-----g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
...+..+.. +|++.|+..+.. + .|+..++.++.....+. + ...........+.|||||++++..
T Consensus 363 -~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt-----~--~~~~~~~~~~~~~~S~dg~~~~~~ 433 (740)
T 4a5s_A 363 -TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLS-----C--ELNPERCQYYSVSFSKEAKYYQLR 433 (740)
T ss_dssp -SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESS-----T--TTSTTTBCBEEEEECTTSSEEEEE
T ss_pred -CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeec-----c--ccCCCCCceEEEEECCCCCEEEEE
Confidence 345555442 446666655543 3 34444554443221110 0 001124567899999999987765
Q ss_pred c----CCeEEEEeCCCCeEEEEec
Q 040987 627 A----ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 627 ~----d~~i~iwd~~~~~~~~~l~ 646 (762)
. -..+.+++..+++.+..+.
T Consensus 434 ~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 434 CSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp ECSBSSCEEEEEETTTTEEEEEEE
T ss_pred eCCCCCCEEEEEECCCCcEEEEec
Confidence 4 2578999999887766654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-22 Score=222.07 Aligned_cols=376 Identities=9% Similarity=-0.028 Sum_probs=246.1
Q ss_pred CCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC-----eEEEEEcCCCcEEEEeecC--------
Q 040987 236 KEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK-----LTVLAFHPTQRIVAAGDVT-------- 302 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~~~~l~~~~~d-------- 302 (762)
.....++|+|||++++++ ++.|++||+.+++.. ..+..|... ...++|||||++|++++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSS-----VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEE-----EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCceE-----EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 346689999999999887 999999999998864 445555432 2448899999999998875
Q ss_pred -CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 303 -GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 -g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
+.+.+||+.+++. ..+..|...+..++|||||+.|+.+. ++.|++|+
T Consensus 91 ~~~~~~~d~~~~~~-------------------------------~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~ 138 (740)
T 4a5s_A 91 TASYDIYDLNKRQL-------------------------------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKI 138 (740)
T ss_dssp EEEEEEEETTTTEE-------------------------------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceEEEEEECCCCcE-------------------------------EEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence 5677999987742 23455677899999999999999885 68999999
Q ss_pred cCCCceeccCCCC--CCe-----------------EEEEeCCCCCeEEEEecCC-cEEEEEcCCceEEEEEccCCCCCCC
Q 040987 382 LDTGKKKFLPRIG--SPL-----------------LYFTESPDPSLSSISCADN-QVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 382 ~~~~~~~~~~~~~--~~v-----------------~~~~~s~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+.+++...+...+ ..+ ..+.|||||+.|+....|. .+.+|++...... ..+.
T Consensus 139 ~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~---~~~~----- 210 (740)
T 4a5s_A 139 EPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQY----- 210 (740)
T ss_dssp STTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST---TCSS-----
T ss_pred CCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC---CCCC-----
Confidence 9988865543322 222 3489999999999887654 4777775321000 0011
Q ss_pred CCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC---CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD---DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
..+..+.+.+.|.. .....|++||+.+ ++.+......... ....+...+..++|+|||+.++....
T Consensus 211 -----~~~~~~~yp~~G~~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~wspdg~~~~~~~~ 279 (740)
T 4a5s_A 211 -----PKTVRVPYPKAGAV----NPTVKFFVVNTDSLSSVTNATSIQITAPA--SMLIGDHYLCDVTWATQERISLQWLR 279 (740)
T ss_dssp -----CEEEEEECCBTTSC----CCEEEEEEEETTSCCSSSCCCEEEECCCH--HHHTSCEEEEEEEEEETTEEEEEEEE
T ss_pred -----CcceeecCCCCcCc----CCeeEEEEEECCCCCCCCcceEEEecCCc--cCCCCCeEEEEEEEeCCCeEEEEEeC
Confidence 34566777776643 2234799999988 6422221111100 00012667999999999997776642
Q ss_pred eccccCCCceeEEEEEEecCCC----c--eeEEEEEeecCCCCCceE-----EEEEcCCCCeEE-EEeC-CC--cEEEEE
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQN----K--EFTLSTIVYEPHRDAGIS-----AVAFHPNRRAAV-SSSY-GG--DFKVWI 583 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~----~--~~~~~~~~~~~h~~~~v~-----~~~~spd~~~l~-~~~~-dg--~i~iwd 583 (762)
+ ...+..|++||+.+++ + ...+. ..+| ...+. .++|+|||+.|+ ..+. +| .|++||
T Consensus 280 r-----~~~~~~i~~~d~~tg~~~~~~~~~~~l~---~~~~-~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~ 350 (740)
T 4a5s_A 280 R-----IQNYSVMDICDYDESSGRWNCLVARQHI---EMST-TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (740)
T ss_dssp S-----STTEEEEEEEEEETTTTEEEECGGGCEE---EECS-SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred C-----CCCEEEEEEEECCCCccccceeEEEEee---eccC-CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEE
Confidence 1 1145689999999987 1 11111 1344 44444 789999999877 6653 33 588889
Q ss_pred cccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-------CeEEEEeCCCCeEEEEecc----ccCc
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-------TVITLWDPDRNVLVAVIGE----TLTP 651 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-------~~i~iwd~~~~~~~~~l~~----~~~~ 651 (762)
..++....... ....+..+. ++|++.|+..+ . ..|+..++..++....+.. ....
T Consensus 351 ~~~~~~~~lT~------------g~~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~ 417 (740)
T 4a5s_A 351 IDKKDCTFITK------------GTWEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQ 417 (740)
T ss_dssp TTCSSCEESCC------------SSSCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBC
T ss_pred CCCCceEeccc------------CCEEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCc
Confidence 88765543331 234455443 24576665543 3 3566666666554434432 2356
Q ss_pred eeEEEEeCCCCEEEEEEcC-CCCeEEEEECCCCceeeEEE
Q 040987 652 IMNMSFVGSSEYLVATSWG-SKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d-~~~~v~vwd~~~~~~~~~~~ 690 (762)
...+.||||+++++..... +...+.+++..+++....+.
T Consensus 418 ~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 418 YYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp BEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 8899999999987765433 33458899998887655443
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-21 Score=197.44 Aligned_cols=288 Identities=10% Similarity=0.064 Sum_probs=186.7
Q ss_pred CCeEEEEecC--CCceec--cCCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEcCCceE--EEEEccCCCCCCCCCc
Q 040987 374 EGVLVVWQLD--TGKKKF--LPRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKMPSMEI--IRSISGIKLPCPLPEE 444 (762)
Q Consensus 374 dg~i~~wd~~--~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~ 444 (762)
++.|.+|+++ +++... ...+......++|+|||+ +++++. ++.|.+|++.+++. +..+..+.
T Consensus 15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~-------- 85 (347)
T 3hfq_A 15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPG-------- 85 (347)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEES--------
T ss_pred CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCC--------
Confidence 4566666554 455432 333445677899999999 555554 58999999977653 33333333
Q ss_pred ccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecc-cccCC-CCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 445 YKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCER-NHQPG-DDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 445 ~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
..+..++|+|||++|++++ .++.+.+|++........+..... +..+. ......+.+++|+|||+++++..
T Consensus 86 --~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~---- 159 (347)
T 3hfq_A 86 --TPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDL---- 159 (347)
T ss_dssp --CCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEET----
T ss_pred --CCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeC----
Confidence 5678899999999888887 679999999964333333222111 10000 00133588999999999544443
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc--ccccccccCCce
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND--ELQQKDLQSSGW 598 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~--~~~~~~~~~~~~ 598 (762)
.++.|.+|++............. ... ......++|+|||++++++ ..++.+.+|++.. ++...... .
T Consensus 160 -----~~~~v~~~~~~~~g~~~~~~~~~-~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~---~ 229 (347)
T 3hfq_A 160 -----GSDKVYVYNVSDAGQLSEQSVLT-MEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGI---V 229 (347)
T ss_dssp -----TTTEEEEEEECTTSCEEEEEEEE-CCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE---E
T ss_pred -----CCCEEEEEEECCCCcEEEeeeEE-cCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeee---e
Confidence 67899999998333222222111 122 3467889999999966664 5678999999874 33211100 0
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCC---CeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDR---NVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~---~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
............+..++|+|||++|+++ . ++.|.+|++.. .+.+..+..+...+..++|+|||++|++++.+. +
T Consensus 230 ~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~ 308 (347)
T 3hfq_A 230 KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-D 308 (347)
T ss_dssp ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-T
T ss_pred eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-C
Confidence 0000000112458899999999988655 4 89999999973 356666666666789999999999999988763 2
Q ss_pred eEEEE--ECCCCceee
Q 040987 674 QLSVW--NMSKLSISW 687 (762)
Q Consensus 674 ~v~vw--d~~~~~~~~ 687 (762)
.|.+| |.++|++..
T Consensus 309 ~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 309 NATLYARDLTSGKLSL 324 (347)
T ss_dssp EEEEEEECTTTCCEEE
T ss_pred cEEEEEEeCCCCeEEe
Confidence 49999 556677653
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-20 Score=193.66 Aligned_cols=268 Identities=16% Similarity=0.140 Sum_probs=176.3
Q ss_pred ccccceeEEEEecCCCEEEEEec---CCeEEEEecCCCceecc---CCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEc
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFL---PRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKM 423 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~ 423 (762)
.+...+..++|+|||+ |++++. ++.|++|++.+++...+ ..+...+..++|+|||++|++++ .++.+.+|++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~ 115 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI 115 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 3556678899999998 666554 58999999987765332 33566788999999999988887 6789999999
Q ss_pred CC-c--eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 424 PS-M--EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 424 ~~-~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.. + +.+..+........ .......+.+++|+|||+++++...++.|++|++.....+.......... ...
T Consensus 116 ~~~g~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------g~~ 188 (347)
T 3hfq_A 116 AADGALTLTDTVQHSGHGPR-PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA------GFG 188 (347)
T ss_dssp CTTSCEEEEEEEECCCCCSS-TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT------TCC
T ss_pred CCCCCeeecceeecCCCCCC-ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC------CCC
Confidence 63 2 33333322110000 01112357889999999966666678899999998333222222111100 234
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce-eEEEEEeecCC---CCCceEEEEEcCCCCeEE-EEeC
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE-FTLSTIVYEPH---RDAGISAVAFHPNRRAAV-SSSY 575 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~~~h---~~~~v~~~~~spd~~~l~-~~~~ 575 (762)
+..++|+|||+++++++. .++.|.+|++...... ..+......+. ....+..++|+|||++|+ +...
T Consensus 189 p~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 189 PRHLVFSPDGQYAFLAGE--------LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp EEEEEECTTSSEEEEEET--------TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred CceEEECCCCCEEEEEeC--------CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 678999999997777652 6789999999852222 11211111111 014588999999999874 5556
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCCeEE
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRNVLV 642 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~~~~ 642 (762)
++.|.+|++......... .....+...+..++|+|||++|++++ ++.|.+| |.++|++.
T Consensus 261 ~~~v~v~~~~~~g~~~~~--------~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 261 YNTLAVFAVTADGHLTLI--------QQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp TTEEEEEEECGGGCEEEE--------EEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCEEEEEEECCCCcEEEe--------EEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 899999999743211111 11223355678999999999988886 5899999 55667654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-21 Score=200.75 Aligned_cols=287 Identities=12% Similarity=0.014 Sum_probs=200.3
Q ss_pred EEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC--CeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEcc
Q 040987 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
.++++++++++++++.+++|++||..+++......... .+..++|+|+|+.++++ ..++.|.+||+.+++....+..
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 35677888899999999999999999988754433333 57889999999876655 4678999999999988877653
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
...+ ......+..++|+|||+++++++.+ +.|.+||+.+++....+..... ...+.
T Consensus 84 ~~~~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--------~~~~~ 151 (349)
T 1jmx_B 84 SSVP----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--------PRQVY 151 (349)
T ss_dssp CCST----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--------CSSCC
T ss_pred cccc----ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC--------CCccc
Confidence 2200 0001236789999999999998865 8999999987544332222111 22477
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec---------------CCCC---CceEEEEEc
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE---------------PHRD---AGISAVAFH 564 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------~h~~---~~v~~~~~s 564 (762)
+++|+|||+ +++++ . .|.+||..+++....+...... +... .....++++
T Consensus 152 ~~~~s~dg~-l~~~~---------~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (349)
T 1jmx_B 152 LMRAADDGS-LYVAG---------P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF 219 (349)
T ss_dssp CEEECTTSC-EEEES---------S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC
T ss_pred ceeECCCCc-EEEcc---------C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec
Confidence 889999999 55554 3 3999999988765544210000 0000 023456676
Q ss_pred CCCCe-----------EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEcCCeEE
Q 040987 565 PNRRA-----------AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAAETVIT 632 (762)
Q Consensus 565 pd~~~-----------l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~d~~i~ 632 (762)
+++.. +.....++.+++|++. .+...+..++|+| ||++++++ ++.|.
T Consensus 220 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~sp~dg~~l~~~-~~~v~ 278 (349)
T 1jmx_B 220 KDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------DLTELYFTGLRSPKDPNQIYGV-LNRLA 278 (349)
T ss_dssp -------CCCEEEEEEEEEETTTCCEEEEEEE--------------------ECSSCEEEEEECSSCTTEEEEE-ESEEE
T ss_pred CCCcCCccccccceeEEEEeccCCcEEecccc--------------------cCCCcceeeEecCCCCCEEEEE-cCeEE
Confidence 65421 1122233445555442 1345678999999 99999988 89999
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+||+.+++.+..+.. ...+.+++|+|||++|++++.++. |.+||+++++.+..+..+
T Consensus 279 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~--v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 279 KYDLKQRKLIKAANL-DHTYYCVAFDKKGDKLYLGGTFND--LAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEETTTTEEEEEEEC-SSCCCEEEECSSSSCEEEESBSSE--EEEEETTTTEEEEEEECS
T ss_pred EEECccCeEEEEEcC-CCCccceEECCCCCEEEEecCCCe--EEEEeccccceeeeeecC
Confidence 999999998887763 345789999999999999887876 999999999988877655
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.6e-22 Score=217.62 Aligned_cols=275 Identities=15% Similarity=0.090 Sum_probs=198.9
Q ss_pred cccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEec---CCcEEEEEcCC-
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCA---DNQVHLLKMPS- 425 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~~~- 425 (762)
+..+|++++|+|||++|++++. ||++.+|++++++...+..+. ..+..++|+|| +.++++.. +....+|.+..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 3567999999999999999887 999999999888887777766 57899999999 77776654 34455554432
Q ss_pred --ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 426 --MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 --~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+... .+... ......+|+||++.+ ++...++.+.+||+.+++....... .. .
T Consensus 99 ~~g~~~-~l~~~-----------~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-----------~~--~ 153 (582)
T 3o4h_A 99 RPGEEQ-RLEAV-----------KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-----------PG--F 153 (582)
T ss_dssp STTCCE-ECTTS-----------CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-----------SS--C
T ss_pred CCCccc-cccCC-----------CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-----------CC--c
Confidence 2222 33222 123466888888643 3333445566999988754322211 12 6
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC--cEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG--DFK 580 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg--~i~ 580 (762)
+++|+|||++|++++.+. +....|++||+.+++.. .+ ..| ...+..++|||||+.|+++..++ .|+
T Consensus 154 ~~~~spDG~~la~~~~~~-----~~~~~i~~~d~~~g~~~-~l-----~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~i~ 221 (582)
T 3o4h_A 154 GFVSDIRGDLIAGLGFFG-----GGRVSLFTSNLSSGGLR-VF-----DSG-EGSFSSASISPGMKVTAGLETAREARLV 221 (582)
T ss_dssp EEEEEEETTEEEEEEEEE-----TTEEEEEEEETTTCCCE-EE-----CCS-SCEEEEEEECTTSCEEEEEECSSCEEEE
T ss_pred eEEECCCCCEEEEEEEcC-----CCCeEEEEEcCCCCCce-Ee-----ecC-CCccccceECCCCCEEEEccCCCeeEEE
Confidence 889999999999887210 01278999999888654 22 456 77889999999999999888888 899
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEE--------EcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCc
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAA--------FSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTP 651 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~ 651 (762)
+||+.+++.. .. ..+...+..++ |||||+++++++ |+++++|++ |+.+.. +.+.
T Consensus 222 ~~d~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~---~~~~ 284 (582)
T 3o4h_A 222 TVDPRDGSVE-DL-----------ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEA---PQGN 284 (582)
T ss_dssp EECTTTCCEE-EC-----------CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECC---CSSE
T ss_pred EEcCCCCcEE-Ec-----------cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeecc---CCCc
Confidence 9999887765 33 23444555555 999998888887 999999999 766552 3466
Q ss_pred eeEEEEeCCCCEEEEEEcCCC-CeEEEEECCC
Q 040987 652 IMNMSFVGSSEYLVATSWGSK-PQLSVWNMSK 682 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~-~~v~vwd~~~ 682 (762)
+.+++|+ ||+++++++.+.. ..+.+||..+
T Consensus 285 v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 285 HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 8999999 9999999887753 2477777654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=215.82 Aligned_cols=268 Identities=11% Similarity=0.032 Sum_probs=195.0
Q ss_pred cCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-ccee
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEVS 357 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~ 357 (762)
+..+|.+++|+|||++||+++. ||+++||++.+++. ..+..|. ..+.
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-------------------------------~~lt~~~~~~~~ 68 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-------------------------------VKLNREPINSVL 68 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-------------------------------EECCSSCCSEEC
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-------------------------------Eeeecccccccc
Confidence 3557999999999999999877 99999999865532 2334444 5789
Q ss_pred EEEEecCCCEEEEEec---CCeEEEE--ec--CCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEE
Q 040987 358 VLIFSSDGAYLYSGGK---EGVLVVW--QL--DTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~---dg~i~~w--d~--~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~ 429 (762)
.++|+|| +.+++++. +....+| +. ..... .+.. .......+|+|||+.+ ++...++.+.+||+.+++..
T Consensus 69 ~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 69 DPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145 (582)
T ss_dssp EECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred cccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-CCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence 9999999 77777664 3444554 44 33332 3222 2234567888888653 33445556669999988766
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
.....+ . .+++|+|||++|++++.+ +.|++||+.+++.. .+. .+ ...+..++
T Consensus 146 ~l~~~~-----------~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~----~~------~~~~~~~~ 201 (582)
T 3o4h_A 146 ELARLP-----------G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD----SG------EGSFSSAS 201 (582)
T ss_dssp EEEEES-----------S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EEC----CS------SCEEEEEE
T ss_pred EeecCC-----------C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eee----cC------CCccccce
Confidence 554321 2 789999999999988877 78999999887643 221 11 56689999
Q ss_pred EecCCCeEEEEeeeccccCCCcee--EEEEEEecCCCceeEEEEEeecCCCCCceEEEE--------EcCCCCeEEEEeC
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLV--CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA--------FHPNRRAAVSSSY 575 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~--------~spd~~~l~~~~~ 575 (762)
|||||++|+++. .++ .|++||+.+++.. .+ .+| ...+..++ |+|||.++++++.
T Consensus 202 ~SpDG~~l~~~~---------~~~~~~i~~~d~~~~~~~-~~-----~~~-~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 265 (582)
T 3o4h_A 202 ISPGMKVTAGLE---------TAREARLVTVDPRDGSVE-DL-----ELP-SKDFSSYRPTAITWLGYLPDGRLAVVARR 265 (582)
T ss_dssp ECTTSCEEEEEE---------CSSCEEEEEECTTTCCEE-EC-----CCS-CSHHHHHCCSEEEEEEECTTSCEEEEEEE
T ss_pred ECCCCCEEEEcc---------CCCeeEEEEEcCCCCcEE-Ec-----cCC-CcChhhhhhccccceeEcCCCcEEEEEEc
Confidence 999999999665 455 8999999988654 22 456 66666677 9999988899999
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C---CeEEEEeCCC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E---TVITLWDPDR 638 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d---~~i~iwd~~~ 638 (762)
|+.+++|++ ++.... ....+.+++|+ ||+++++++ + ..+++||..+
T Consensus 266 ~g~~~l~~~--g~~~~~--------------~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~ 315 (582)
T 3o4h_A 266 EGRSAVFID--GERVEA--------------PQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE 315 (582)
T ss_dssp TTEEEEEET--TEEECC--------------CSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCC
T ss_pred CCcEEEEEE--CCeecc--------------CCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC
Confidence 999999999 443321 24678899999 999998876 5 4577777764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-20 Score=189.36 Aligned_cols=311 Identities=11% Similarity=0.003 Sum_probs=198.2
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
++++++++++++++ ++.|.+||+++++.+.++..+. ..+..++|+|+++ .++++...++.|.+||+.+++.+
T Consensus 5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~------~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR------TAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS------EEEEEETTTTEEEEEETTTTEEE
T ss_pred ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCC------EEEEEeCCCCcEEEEeCCCCcEE
Confidence 78999999999988 6999999999999998887543 2588999999994 34456667899999999998877
Q ss_pred EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC
Q 040987 157 KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK 236 (762)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (762)
..+..... ......
T Consensus 79 ~~~~~~~~------------------------------------------------------------------~~~~~~ 92 (349)
T 1jmx_B 79 FHANLSSV------------------------------------------------------------------PGEVGR 92 (349)
T ss_dssp EEEESCCS------------------------------------------------------------------TTEEEE
T ss_pred EEEEcccc------------------------------------------------------------------cccccc
Confidence 65542100 000012
Q ss_pred CceEEEECCCCCEEEEEe-------------CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC
Q 040987 237 EPQVITISSSGKYFGIRK-------------QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~-------------~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 303 (762)
.+..++|+|||++|+++. ++.|.+||+.+++.. ...... .+...+.+++|+|||+ +++++.
T Consensus 93 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~--~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~-- 166 (349)
T 1jmx_B 93 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVRTF-PMPRQVYLMRAADDGS-LYVAGP-- 166 (349)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSEEE-ECCSSCCCEEECTTSC-EEEESS--
T ss_pred cccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc--ceeeec-cCCCcccceeECCCCc-EEEccC--
Confidence 356789999999998653 489999999986543 111222 3344688999999999 555543
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEEEec
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQL 382 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~ 382 (762)
.|.+||..+++................... .+..+........ ......+++++++......... ..+..+|.
T Consensus 167 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 240 (349)
T 1jmx_B 167 DIYKMDVKTGKYTVALPLRNWNRKGYSAPD--VLYFWPHQSPRHE----FSMLYTIARFKDDKQDPATADLLYGYLSVDL 240 (349)
T ss_dssp SEEEECTTTCCEEEEECSTTCCCTTBCCCB--CCCCCCCCCTTCE----EEEEEEEEEC-------CCCEEEEEEEEEET
T ss_pred cEEEEeCCCCceeccccccccCCccccCcc--ceeeecCCCccee----EEeeeeeeecCCCcCCccccccceeEEEEec
Confidence 499999987765432110000000000000 0000000000000 0023456666654221111111 11222444
Q ss_pred CCCceec--cCCCCCCeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 383 DTGKKKF--LPRIGSPLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 383 ~~~~~~~--~~~~~~~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.+++... .......+..++++| ++++++++ ++.|.+||+.+++.+..+... ..+.+++|+|+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~~s~dg~ 307 (349)
T 1jmx_B 241 KTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLD-----------HTYYCVAFDKKGD 307 (349)
T ss_dssp TTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEEECSSSS
T ss_pred cCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCC-----------CCccceEECCCCC
Confidence 4443311 122455788999999 99999888 889999999999988877643 3457899999999
Q ss_pred EEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 460 LVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 460 ~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
+|++++.++.|.+||+.+++.+..+..
T Consensus 308 ~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 308 KLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp CEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEecCCCeEEEEeccccceeeeeec
Confidence 999888899999999998876665543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=186.58 Aligned_cols=280 Identities=13% Similarity=0.119 Sum_probs=183.3
Q ss_pred cccceeEEEEecCCCEEEEEecC----CeEEEEecCC--Cceec---cCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKE----GVLVVWQLDT--GKKKF---LPRIGSPLLYFTESPDPSLSSISC-ADNQVHLL 421 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~d----g~i~~wd~~~--~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~ 421 (762)
+...+..++|+|||++|++++.+ +.|.+|++.. ++... ...+......+++ ++++++++. .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 66677889999999999998875 7999998875 44432 2234456777787 888877776 57899999
Q ss_pred EcCCceEEEEEc---cCCC-CCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCc------eeeE---Eee
Q 040987 422 KMPSMEIIRSIS---GIKL-PCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRG------ISEV---QVC 487 (762)
Q Consensus 422 d~~~~~~~~~~~---~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~------~~~~---~~~ 487 (762)
++.....+..+. .+.. ...........+.+++|+|||++++++. .++.|.+|++..... +... ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 997533222111 0110 0000011123467899999999776655 478999999876542 2111 111
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR 567 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~ 567 (762)
.... ...+..++|+|||+++++++. .++.|.+|++.++.............+ ......++|+|||
T Consensus 206 ~~~~------~~~~~~~~~spdg~~l~v~~~--------~~~~v~v~~~~~g~~~~~~~~~~~~~~-~~~~~~i~~spdg 270 (361)
T 3scy_A 206 KVAP------GSGPRHLIFNSDGKFAYLINE--------IGGTVIAFRYADGMLDEIQTVAADTVN-AQGSGDIHLSPDG 270 (361)
T ss_dssp ECCT------TCCEEEEEECTTSSEEEEEET--------TTCEEEEEEEETTEEEEEEEEESCSSC-CCCEEEEEECTTS
T ss_pred ecCC------CCCCeEEEEcCCCCEEEEEcC--------CCCeEEEEEecCCceEEeEEEecCCCC-CCCcccEEECCCC
Confidence 1111 344788999999998887763 578999999986643222111112233 4557899999999
Q ss_pred CeEEEEeCC--CcEEEEEcc--cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEE--eCCCC
Q 040987 568 RAAVSSSYG--GDFKVWICN--DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLW--DPDRN 639 (762)
Q Consensus 568 ~~l~~~~~d--g~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iw--d~~~~ 639 (762)
++|+++..+ +.|.+|++. ++...... .... ...+..++|+|||++|++++ ++.|.+| |.+++
T Consensus 271 ~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~---------~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g 340 (361)
T 3scy_A 271 KYLYASNRLKADGVAIFKVDETNGTLTKVG---------YQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATG 340 (361)
T ss_dssp SEEEEEECSSSCEEEEEEECTTTCCEEEEE---------EEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTC
T ss_pred CEEEEECCCCCCEEEEEEEcCCCCcEEEee---------EecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCC
Confidence 998776654 889999996 33321111 1111 45678999999999988886 7899995 55677
Q ss_pred eEEEEe-ccccCceeEEEEe
Q 040987 640 VLVAVI-GETLTPIMNMSFV 658 (762)
Q Consensus 640 ~~~~~l-~~~~~~v~~~~~s 658 (762)
++.... ..+...+.++.|.
T Consensus 341 ~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 341 LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEECSCCEECSSEEEEEEE
T ss_pred cEeecceeeeCCCCeEEEEc
Confidence 765543 2344568888886
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=186.36 Aligned_cols=292 Identities=11% Similarity=0.101 Sum_probs=190.9
Q ss_pred CEEEEEe----cCCeEEEEec--CCCceeccCC-CCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCC--ceE--EE
Q 040987 366 AYLYSGG----KEGVLVVWQL--DTGKKKFLPR-IGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPS--MEI--IR 430 (762)
Q Consensus 366 ~~l~s~~----~dg~i~~wd~--~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~--~~~--~~ 430 (762)
.+++.|+ .++.|++|++ ++++...+.. +......++|+|||++|++++.+ +.+.+|++.. ++. +.
T Consensus 14 ~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~ 93 (361)
T 3scy_A 14 LTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN 93 (361)
T ss_dssp EEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE
T ss_pred eEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee
Confidence 3455553 3567888866 4555432111 55667789999999999998875 7999998865 443 22
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEee----cccccCCCCcceeEEEEE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVC----ERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~ 505 (762)
....+. .....+++ ++++|++++ .++.+.+|++.....+..+... ..+..+.......+.+++
T Consensus 94 ~~~~~~----------~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 94 TQKTMG----------ADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp EEECSS----------SCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred EeccCC----------CCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 232222 34566676 888777766 5789999999765443322111 001111111234478899
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc------eeEE--EEEeecCCCCCceEEEEEcCCCCeEEEEe-CC
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK------EFTL--STIVYEPHRDAGISAVAFHPNRRAAVSSS-YG 576 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~------~~~~--~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~d 576 (762)
|+|||+++++++. .++.|.+|++..... .... .......+ ......++|+|||+++++++ .+
T Consensus 162 ~spdg~~l~~~~~--------~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~ 232 (361)
T 3scy_A 162 ITPDGKYLLADDL--------GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIG 232 (361)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTT
T ss_pred ECCCCCEEEEEeC--------CCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCC
Confidence 9999998877663 578999999986542 2111 01111233 55678999999999888777 58
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C--CeEEEEeCC--CCe--EEEEecccc
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E--TVITLWDPD--RNV--LVAVIGETL 649 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d--~~i~iwd~~--~~~--~~~~l~~~~ 649 (762)
+.|.+|++.++...... .......+......++|+|||++|+++. + +.|.+|++. +++ .+..+.. .
T Consensus 233 ~~v~v~~~~~g~~~~~~------~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g 305 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQ------TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G 305 (361)
T ss_dssp CEEEEEEEETTEEEEEE------EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S
T ss_pred CeEEEEEecCCceEEeE------EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C
Confidence 89999999866432211 1111222345568999999999987765 4 799999985 454 4444543 4
Q ss_pred CceeEEEEeCCCCEEEEEEc-CCCCeEEEE--ECCCCceee
Q 040987 650 TPIMNMSFVGSSEYLVATSW-GSKPQLSVW--NMSKLSISW 687 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~~~-d~~~~v~vw--d~~~~~~~~ 687 (762)
..+.+++|+|||++|++++. ++. |.+| |.++|++..
T Consensus 306 ~~~~~~~~spdg~~l~~~~~~~~~--v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 306 IHPRNFIITPNGKYLLVACRDTNV--IQIFERDQATGLLTD 344 (361)
T ss_dssp SCCCEEEECTTSCEEEEEETTTTE--EEEEEECTTTCCEEE
T ss_pred CCCceEEECCCCCEEEEEECCCCC--EEEEEEECCCCcEee
Confidence 56789999999999999984 454 9996 555676543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-21 Score=197.71 Aligned_cols=296 Identities=14% Similarity=0.018 Sum_probs=197.7
Q ss_pred ceeeeccccceeE-----EEEecCCCEEEEEec-CC--eEEEEecCCCceeccCCCCC-CeEEEEeCCCCCeEEEEecCC
Q 040987 346 CTTWHWHPSEVSV-----LIFSSDGAYLYSGGK-EG--VLVVWQLDTGKKKFLPRIGS-PLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 346 ~~~~~~h~~~v~~-----~~~s~~g~~l~s~~~-dg--~i~~wd~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~d~ 416 (762)
+..+..|...... .+|+|||++|+.++. ++ .|.+||+.+++...+..... .+..+.|+|||+.|+++..++
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~ 102 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGR 102 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTT
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCC
Confidence 3455555544444 789999999998887 66 58999999988866554433 444678999999999999899
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceee--EEEeCCCCEEEEe----------------------ecCceEEE
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD--IAFNHDGGLVALR----------------------AENYCIHF 472 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~~~~~l~~~----------------------~~dg~i~i 472 (762)
.+++||+.+++....+..+. ..+.. ..++|++++++.. ..+..|++
T Consensus 103 ~l~~~d~~~g~~~~~~~~~~----------~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 103 NLMRVDLATLEENVVYQVPA----------EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp EEEEEETTTCCEEEEEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred eEEEEECCCCcceeeeechh----------hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 99999999988776665443 33333 3458999988743 23478999
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
||+.+++....... ...+..++|+| ||+.|+....... ......|.++|..++... .+ .
T Consensus 173 ~d~~~g~~~~l~~~-----------~~~~~~~~~sp~dg~~l~~~~~~~~---~~~~~~l~~~d~~~~~~~-~l-----~ 232 (388)
T 3pe7_A 173 VDLKTGESTVILQE-----------NQWLGHPIYRPYDDSTVAFCHEGPH---DLVDARMWLINEDGTNMR-KV-----K 232 (388)
T ss_dssp EETTTCCEEEEEEE-----------SSCEEEEEEETTEEEEEEEEECSCT---TTSSCSEEEEETTSCCCE-ES-----C
T ss_pred EECCCCceEEeecC-----------CccccccEECCCCCCEEEEEEecCC---CCCcceEEEEeCCCCceE-Ee-----e
Confidence 99998754322211 34578999999 9999988863100 001347888887765432 22 1
Q ss_pred CCCC-CceEEEEEcCCCCeEEEEeCC-C----cEEEEEcccccccccccCCceeeeeecccCC---CCeEEEEEcCCCcE
Q 040987 552 PHRD-AGISAVAFHPNRRAAVSSSYG-G----DFKVWICNDELQQKDLQSSGWSCHAVGSYKK---KAMTAAAFSADGSV 622 (762)
Q Consensus 552 ~h~~-~~v~~~~~spd~~~l~~~~~d-g----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~s~dg~~ 622 (762)
.+.. ..+..++|+|||+.|+..+.+ + .|++||+.+++...... ...+. .....++|+|||+.
T Consensus 233 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~~~~~~~~~~~~~~~~spdg~~ 303 (388)
T 3pe7_A 233 THAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTS---------MPACSHLMSNYDGSLMVGDGSD 303 (388)
T ss_dssp CCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEE---------ECCEEEEEECTTSSEEEEEECC
T ss_pred eCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEc---------CCCceeeeecCCCCeEccCCCc
Confidence 2202 357889999999988765532 2 39999999886533221 00000 00112379999998
Q ss_pred EEEE---------c-CCeEEEEeCCCCeEEEEeccccC-----------ceeEEEEeCCCCEEEEEEc-CCCCeEEEEEC
Q 040987 623 LAVA---------A-ETVITLWDPDRNVLVAVIGETLT-----------PIMNMSFVGSSEYLVATSW-GSKPQLSVWNM 680 (762)
Q Consensus 623 la~~---------~-d~~i~iwd~~~~~~~~~l~~~~~-----------~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~ 680 (762)
|+.. . +..|++||+.+++.. .+..|.. .+.+++|+|||++|+.++. ++...|++.++
T Consensus 304 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 304 APVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp C------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred ceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEEC
Confidence 8753 3 678999999988764 4444555 5788999999999998775 55523444444
Q ss_pred C
Q 040987 681 S 681 (762)
Q Consensus 681 ~ 681 (762)
.
T Consensus 383 ~ 383 (388)
T 3pe7_A 383 P 383 (388)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=196.20 Aligned_cols=301 Identities=11% Similarity=0.040 Sum_probs=196.8
Q ss_pred ecCCc-ceeeeecCccc-----ccCCceeecCCCEEEEEeC--C--EEEEEEcccceEEeeecCCccceeEEEEeCCCCc
Q 040987 59 EYPAV-NSKMIRGGRSY-----VSSPPAFSNDVKRLLVCTS--N--TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP 128 (762)
Q Consensus 59 ~~~~~-~~~~~~~h~~~-----v~~~~~~s~dg~~la~~~~--~--~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~ 128 (762)
+..++ ....+..|... +.. ++|||||++||++++ + .|.+||+++++......+|...+..+.|+|||
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~-~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-- 92 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQ-KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-- 92 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS--
T ss_pred cCCCCcceEEecCCcccccchhhcC-ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC--
Confidence 44443 34445555533 333 889999999999984 4 59999999999888888887777788999999
Q ss_pred ccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCC
Q 040987 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPR 208 (762)
Q Consensus 129 ~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (762)
+.|+.++.++.|.+||+.+++....+..+......
T Consensus 93 -----~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~---------------------------------------- 127 (388)
T 3pe7_A 93 -----DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGY---------------------------------------- 127 (388)
T ss_dssp -----SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEE----------------------------------------
T ss_pred -----CEEEEEeCCCeEEEEECCCCcceeeeechhhcccc----------------------------------------
Confidence 67888888999999999998876554433211100
Q ss_pred CCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-----------------------eCCeEEEEEccC
Q 040987 209 PNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-----------------------KQRKLLIWKVPD 265 (762)
Q Consensus 209 ~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-----------------------~~~~i~iwd~~~ 265 (762)
....++||++++++. .+..|.+||+.+
T Consensus 128 ------------------------------~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 128 ------------------------------GTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ------------------------------EEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred ------------------------------cceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 011335666666521 236799999998
Q ss_pred chhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecC------CeEEEEeccCCceeecccccccccccccccCCCCcc
Q 040987 266 VEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVT------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR 338 (762)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (762)
++.. ....+...+..++|+| ||++|+....+ ..|.+++..++..
T Consensus 178 g~~~------~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~----------------------- 228 (388)
T 3pe7_A 178 GEST------VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM----------------------- 228 (388)
T ss_dssp CCEE------EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----------------------
T ss_pred CceE------EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----------------------
Confidence 8653 3445667799999999 99999877653 3677777755432
Q ss_pred cCCccccceeeeccc--cceeEEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCC------eEEEEeCCC
Q 040987 339 DNDDADLCTTWHWHP--SEVSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSP------LLYFTESPD 405 (762)
Q Consensus 339 ~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~------v~~~~~s~~ 405 (762)
..+..+. ..+..++|+|||+.|+..+.+ ..|++||+.+++...+...... ...+.|+||
T Consensus 229 --------~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spd 300 (388)
T 3pe7_A 229 --------RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGD 300 (388)
T ss_dssp --------EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEE
T ss_pred --------EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccC
Confidence 2222233 347788999999988665432 2499999999886443222220 111368999
Q ss_pred CCeEEEE---------ecCCcEEEEEcCCceEEEEEccCCCCCC-CCCcccCceeeEEEeCCCCEEEEeec-CceEEEEE
Q 040987 406 PSLSSIS---------CADNQVHLLKMPSMEIIRSISGIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYS 474 (762)
Q Consensus 406 ~~~l~~~---------~~d~~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d 474 (762)
|+.|++. ..+..|++||+.+++.. .+..+..... ........+..++|+|||+.|++.+. ++...+|.
T Consensus 301 g~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 301 GSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp ECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEE
T ss_pred CCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEE
Confidence 9988864 34568999999987654 3443331000 00000014678899999998887764 55555554
Q ss_pred c
Q 040987 475 L 475 (762)
Q Consensus 475 ~ 475 (762)
+
T Consensus 380 ~ 380 (388)
T 3pe7_A 380 A 380 (388)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-19 Score=184.23 Aligned_cols=284 Identities=11% Similarity=0.050 Sum_probs=187.5
Q ss_pred EEEEEecC--CeEEEEec--CCCceeccC----CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccCCC
Q 040987 367 YLYSGGKE--GVLVVWQL--DTGKKKFLP----RIGSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGIKL 437 (762)
Q Consensus 367 ~l~s~~~d--g~i~~wd~--~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~~ 437 (762)
+++.|+.. +.|.+|++ ++++...+. .....+..++|+|||++|++++.+ .+.+|++. +++..........
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555542 46777654 455543221 223467789999999999988877 99999997 7766543321100
Q ss_pred CCCCCCcccCceeeEEEeCCCCE--EEEee-------------cCceEEEEEcCC-CCceeeEEeecccccCCCCcceeE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGL--VALRA-------------ENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~--l~~~~-------------~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+.+..++|+|||++ ++++. .++.+.+|++.. ++....+......+ ...+
T Consensus 83 ---------g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~------~~~~ 147 (365)
T 1jof_A 83 ---------GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE------NTGI 147 (365)
T ss_dssp ---------SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT------TCCE
T ss_pred ---------CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCC------CCcc
Confidence 22456899999995 44543 688999999974 44433333211111 3458
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i 579 (762)
..++|+|||+++++++. .++.|++|++. +++... +.......| ...+..++|+|||+++++++. ++.|
T Consensus 148 ~~~~~spdG~~l~~~~~--------~~~~v~~~~~~~~g~~~~-~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v 217 (365)
T 1jof_A 148 HGMVFDPTETYLYSADL--------TANKLWTHRKLASGEVEL-VGSVDAPDP-GDHPRWVAMHPTGNYLYALMEAGNRI 217 (365)
T ss_dssp EEEEECTTSSEEEEEET--------TTTEEEEEEECTTSCEEE-EEEEECSST-TCCEEEEEECTTSSEEEEEETTTTEE
T ss_pred eEEEECCCCCEEEEEcC--------CCCEEEEEEECCCCCEEE-eeeEecCCC-CCCCCEeEECCCCCEEEEEECCCCeE
Confidence 89999999999887752 45799999998 565321 221111123 457899999999999888775 6889
Q ss_pred EEEEcc--cccccccccCCceeeeeecc----cCCC------CeEEEE-EcCCCcEEEEEc--CC-----eEEEEeCC-C
Q 040987 580 KVWICN--DELQQKDLQSSGWSCHAVGS----YKKK------AMTAAA-FSADGSVLAVAA--ET-----VITLWDPD-R 638 (762)
Q Consensus 580 ~iwd~~--~~~~~~~~~~~~~~~~~~~~----~~~~------~i~~~~-~s~dg~~la~~~--d~-----~i~iwd~~-~ 638 (762)
.+|++. +++..... ....... ++.. .+..++ |+|||++|++++ +. +|.+|+++ +
T Consensus 218 ~v~~~~~~~g~~~~~~-----~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~ 292 (365)
T 1jof_A 218 CEYVIDPATHMPVYTH-----HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEEECTTTCCEEEEE-----EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred EEEEEeCCCCcEEEcc-----ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCC
Confidence 999875 34321100 0000011 1122 578999 999999988765 33 89999996 6
Q ss_pred CeEEE---EeccccCceeEEEEeC---CCCEEEEEEcC-CCCeEEEEECCCC
Q 040987 639 NVLVA---VIGETLTPIMNMSFVG---SSEYLVATSWG-SKPQLSVWNMSKL 683 (762)
Q Consensus 639 ~~~~~---~l~~~~~~v~~~~~s~---dg~~l~s~~~d-~~~~v~vwd~~~~ 683 (762)
++... ....+......++|+| ||++|++++.+ +. |.+|+++..
T Consensus 293 g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~--v~v~~~~~~ 342 (365)
T 1jof_A 293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGW--LEIYRWKDE 342 (365)
T ss_dssp SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCE--EEEEEEETT
T ss_pred CCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCe--EEEEEEchh
Confidence 66543 2333445577899999 89999999875 55 999999876
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-19 Score=181.38 Aligned_cols=274 Identities=14% Similarity=0.107 Sum_probs=180.9
Q ss_pred CeEEEEec--CCcceeeee----cCcccccCCceeecCCCEEEEEeCCEEEEEEcc-cceEEeeecCC-ccceeEEEEeC
Q 040987 53 GLCRTAEY--PAVNSKMIR----GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTS-TGLQISSLEGH-KAPVTTVIVVP 124 (762)
Q Consensus 53 g~i~~~~~--~~~~~~~~~----~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~-~~~~~~~l~~h-~~~V~~v~~s~ 124 (762)
+.|.+|++ .+++...+. ++...+.. ++|+|||++|++++.+.|.+||+. ++++....... .+.+.+++|+|
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~-~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp 92 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISW-MTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT 92 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSE-EEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcE-EEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC
Confidence 56877765 344443332 23345665 999999999998884599999997 78765433211 13366799999
Q ss_pred CCCcccceeeeEEeee-------------cCCeEEEEeCC-CcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 125 ASTPATKILSYCWTAS-------------LDGTIKYWDFS-VPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 125 ~~~~~~~l~~~l~s~s-------------~d~~i~vWd~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
||+ .+ ++++++ .++++.+|++. +|+....+..
T Consensus 93 dg~----~l-~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~----------------------------- 138 (365)
T 1jof_A 93 NTR----AI-FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN----------------------------- 138 (365)
T ss_dssp CCE----EE-EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE-----------------------------
T ss_pred CCC----EE-EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee-----------------------------
Confidence 992 11 455553 68889999986 4554332210
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEcc-Cch
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVP-DVE 267 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~-~~~ 267 (762)
....+...+.+++|+|||++|+++ .++.|.+|++. +++
T Consensus 139 ---------------------------------------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 139 ---------------------------------------YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGE 179 (365)
T ss_dssp ---------------------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred ---------------------------------------EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCC
Confidence 000134567899999999988765 36799999998 665
Q ss_pred hhhheeeeeee-ccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccC--CceeecccccccccccccccCCCCcccCCcc
Q 040987 268 AERVVMRKITL-HHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFG--DRTFATNDNKMNLNLMNNEEERPGVRDNDDA 343 (762)
Q Consensus 268 ~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (762)
.. ....... .|...+..++|+|||++|++++. ++.|.+|++.. ++.....
T Consensus 180 ~~--~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~------------------------ 233 (365)
T 1jof_A 180 VE--LVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTH------------------------ 233 (365)
T ss_dssp EE--EEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE------------------------
T ss_pred EE--EeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEcc------------------------
Confidence 32 1111111 24567999999999999887765 68999998752 3211000
Q ss_pred ccceee----ecccc------ceeEEE-EecCCCEEEEEecCC------eEEEEecC-CCceec----cCCCCCCeEEEE
Q 040987 344 DLCTTW----HWHPS------EVSVLI-FSSDGAYLYSGGKEG------VLVVWQLD-TGKKKF----LPRIGSPLLYFT 401 (762)
Q Consensus 344 ~~~~~~----~~h~~------~v~~~~-~s~~g~~l~s~~~dg------~i~~wd~~-~~~~~~----~~~~~~~v~~~~ 401 (762)
..+..+ .+|.. .+..++ |+|||++|+++..+. .|.+|+++ +++... ...+......++
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a 313 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNA 313 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCC
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccce
Confidence 000111 12232 578899 999999988776432 89999996 566542 222344566788
Q ss_pred eCC---CCCeEEEEecC-CcEEEEEcCCc
Q 040987 402 ESP---DPSLSSISCAD-NQVHLLKMPSM 426 (762)
Q Consensus 402 ~s~---~~~~l~~~~~d-~~i~i~d~~~~ 426 (762)
|+| ||++|+++..+ +.|.+|+++..
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 999 89999998764 89999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=177.49 Aligned_cols=300 Identities=9% Similarity=0.073 Sum_probs=204.8
Q ss_pred cCCCEEEEEe-------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee----------cCCeE
Q 040987 83 NDVKRLLVCT-------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS----------LDGTI 145 (762)
Q Consensus 83 ~dg~~la~~~-------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s----------~d~~i 145 (762)
+|++++.+.. |+.|.+||.++++.+.++..+..+ .++|+||| ++|++++ .+++|
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg-------~~lyv~~~~~~~~~~g~~~~~v 83 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDG-------KKIYTMTTYHERITRGKRSDVV 83 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTS-------SEEEEEEEEETTSSSSCEEEEE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCC-------CEEEEEEecccccccCCCCCEE
Confidence 4677776654 469999999999999999877666 89999999 5666654 36789
Q ss_pred EEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 146 KYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 146 ~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
.+||..+++.+.++.....
T Consensus 84 ~v~d~~t~~~~~~i~~~~~------------------------------------------------------------- 102 (361)
T 2oiz_A 84 EVWDADKLTFEKEISLPPK------------------------------------------------------------- 102 (361)
T ss_dssp EEEETTTCCEEEEEEECTT-------------------------------------------------------------
T ss_pred EEEECcCCcEEEEEEcCcc-------------------------------------------------------------
Confidence 9999998888776652210
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC-cEEEEeec
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ-RIVAAGDV 301 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~ 301 (762)
...+...+..++|+|||++|.++. ++.|.+||+.+++.. ...... .....+.+.|++ ..+++.+.
T Consensus 103 -----~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~-----~~~i~~-~~~~~v~~~p~~~~~~~~~~~ 171 (361)
T 2oiz_A 103 -----RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYV-----EDVTAA-AGCWSVIPQPNRPRSFMTICG 171 (361)
T ss_dssp -----BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEE-----EEEGGG-TTEEEEEECTTSSSEEEEEET
T ss_pred -----ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEE-----EEEecC-CCcceeEEcCCCCeeEEEECC
Confidence 000123567789999999997652 578999999988643 220111 122335677765 56778888
Q ss_pred CCeEEEEeccC-CceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEE
Q 040987 302 TGRILIWRGFG-DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380 (762)
Q Consensus 302 dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~w 380 (762)
||.+.+|+... ++...... ....+..+...+ .+.+++++..++..+.++.+.++
T Consensus 172 dg~~~~v~~~~~g~~~~~~~------------------------~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~ 226 (361)
T 2oiz_A 172 DGGLLTINLGEDGKVASQSR------------------------SKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSA 226 (361)
T ss_dssp TSSEEEEEECTTSSEEEEEE------------------------CCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEE
T ss_pred CCcEEEEEECCCCcEeeecc------------------------ccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEE
Confidence 99999998754 32211000 001111122221 23346778788878888999999
Q ss_pred ecCCCceeccC-----C--------CCCCeEEEEeCCCCCeEEEEec-----------CCcEEEEEcCCceEEEEEccCC
Q 040987 381 QLDTGKKKFLP-----R--------IGSPLLYFTESPDPSLSSISCA-----------DNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 381 d~~~~~~~~~~-----~--------~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
|+......... . .......++++|+++.++++.. .+.|.+||+.+++.+..+..+
T Consensus 227 d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~- 305 (361)
T 2oiz_A 227 DFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR- 305 (361)
T ss_dssp ECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-
T ss_pred EecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-
Confidence 98765431100 0 0111223688999988887654 347999999999999988764
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC--CceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD--RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
. +.+++|+|||++|++++. +.|.+||..++ +.+..+... ......++++|+|+
T Consensus 306 ----------~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~----------G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 306 ----------D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGA----------AEASLQVQFHPVGG 360 (361)
T ss_dssp ----------T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTS----------CSSEEEEEECCCSC
T ss_pred ----------C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccC----------CCCcEEEEecCCCC
Confidence 3 689999999999998876 99999999998 666554211 34477899999986
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-18 Score=180.08 Aligned_cols=261 Identities=8% Similarity=-0.056 Sum_probs=173.6
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchh--------h--hheeeeeeeccCcCeEEEEEcCCCcEEE----Eee
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEA--------E--RVVMRKITLHHTKKLTVLAFHPTQRIVA----AGD 300 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~--------~--~~~~~~~~~~~~~~v~~~~~sp~~~~l~----~~~ 300 (762)
...+..+++++++.+++++....+++|+...... . ..........+...|.+++|+|++++|+ +|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs 115 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSE 115 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccC
Confidence 4468999999999999977655699988642110 0 0000011224567899999999999999 788
Q ss_pred cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEE
Q 040987 301 VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVV 379 (762)
Q Consensus 301 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~ 379 (762)
.|+.|++||+.+...-. ............+.+|...|.+++|+|+ +++|++++.||+|++
T Consensus 116 ~d~~v~iwd~~~~~~~~-------------------~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~i 176 (434)
T 2oit_A 116 YGSIIAFFDVRTFSNEA-------------------KQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAV 176 (434)
T ss_dssp TEEEEEEEEHHHHHCTT-------------------CSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEE
T ss_pred CCceEEEEEccccccCC-------------------cCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEE
Confidence 89999999986431000 0000000123566789999999999998 789999999999999
Q ss_pred EecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 380 WQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 380 wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
||++++... ....|...+.+++|+|+|++|++++.|+.|++||.+ ++....+..+... ...+...+.+++|++++
T Consensus 177 wD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~---~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 177 LQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFY---ESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp EEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTC---CTTSCEEEEEEEEEETT
T ss_pred EEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCccc---CCCCceeEEEEEEecCc
Confidence 999988654 344567899999999999999999999999999998 6666666544311 01122478999999988
Q ss_pred CEEEEee-cCc------eEEEEEcCCCCc--eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 459 GLVALRA-ENY------CIHFYSLLDDRG--ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 459 ~~l~~~~-~dg------~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
.++++.+ .+| .+++|++...+. ...+......-.+......+...+..-++.+++++++.
T Consensus 253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~ 321 (434)
T 2oit_A 253 VFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASA 321 (434)
T ss_dssp EEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEET
T ss_pred eEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecC
Confidence 8775543 332 489999986532 12222111100000000122223444578888777763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-19 Score=187.88 Aligned_cols=288 Identities=11% Similarity=-0.052 Sum_probs=194.0
Q ss_pred ceeEEEEecCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
.+..++|+|||++|+..... ..|++||+.+++...+........ .+.|+|||+.|++...++.+++||+.+++...
T Consensus 37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~ 116 (396)
T 3c5m_A 37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV 116 (396)
T ss_dssp CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE
T ss_pred eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE
Confidence 36778999999998877543 478999999988766555444333 37899999999999899999999999887665
Q ss_pred EEccCCCCCCCCCcccCceee-------------------EEEeCCCCEEEEe-----ecCceEEEEEcCCCCceeeEEe
Q 040987 431 SISGIKLPCPLPEEYKGLCRD-------------------IAFNHDGGLVALR-----AENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~-------------------~~~s~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
....+. ..... +.++|+++.++.. ..+..|++||+.+++.......
T Consensus 117 ~~~~~~----------~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~ 186 (396)
T 3c5m_A 117 IYTVDE----------EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD 186 (396)
T ss_dssp EEECCT----------TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE
T ss_pred EEeccc----------ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC
Confidence 554332 11111 3567888877654 3567899999988764333211
Q ss_pred ecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
...+..+.|+| +++.|+..+.. ........|.+||+.++.... +. .......+..++|+|
T Consensus 187 -----------~~~~~~~~~sp~dg~~l~~~~~~---~~~~~~~~l~~~d~~~~~~~~-l~----~~~~~~~~~~~~~sp 247 (396)
T 3c5m_A 187 -----------TAWLGHPIYRPFDDSTVGFCHEG---PHDLVDARMWLVNEDGSNVRK-IK----EHAEGESCTHEFWIP 247 (396)
T ss_dssp -----------SSCEEEEEEETTEEEEEEEEECS---CSSSCSCCCEEEETTSCCCEE-SS----CCCTTEEEEEEEECT
T ss_pred -----------CcccccceECCCCCCEEEEEecC---CCCCCCceEEEEECCCCceeE-ee----ccCCCccccceEECC
Confidence 44578999999 88888777521 000011578888887654322 21 111023578899999
Q ss_pred CCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc------------
Q 040987 566 NRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA------------ 627 (762)
Q Consensus 566 d~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~------------ 627 (762)
||++|+.++.+ +.|++||+.+++...... . .... +.|+| ||+++++++
T Consensus 248 dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~---------~----~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~ 313 (396)
T 3c5m_A 248 DGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV---------M----PPCS-HLMSNFDGSLMVGDGCDAPVDVADADS 313 (396)
T ss_dssp TSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE---------C----CSEE-EEEECSSSSEEEEEECCC---------
T ss_pred CCCEEEEEecCCCCccceEEEEECCCCCeEEeee---------C----CCCC-CCccCCCCceEEEecCCcceeeccccc
Confidence 99988877654 349999998775433220 1 1123 89999 999888742
Q ss_pred -----CCeEEEEeCCCCeEEEEeccccC-----------ceeEEEEeCCCCEEEEEEc-CCCCeEEEEECCCCcee
Q 040987 628 -----ETVITLWDPDRNVLVAVIGETLT-----------PIMNMSFVGSSEYLVATSW-GSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 628 -----d~~i~iwd~~~~~~~~~l~~~~~-----------~v~~~~~s~dg~~l~s~~~-d~~~~v~vwd~~~~~~~ 686 (762)
+..|++||+.+++.. .+..+.. .+..++|+|||+.|++++. ++...|+..++.++...
T Consensus 314 ~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 314 YNIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp -CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred cccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 378999999988754 3444443 2567899999999998875 44434555566665543
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-19 Score=183.90 Aligned_cols=321 Identities=11% Similarity=0.011 Sum_probs=202.5
Q ss_pred EecCCcce-eeeecCcc-----cccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCC
Q 040987 58 AEYPAVNS-KMIRGGRS-----YVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAST 127 (762)
Q Consensus 58 ~~~~~~~~-~~~~~h~~-----~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~ 127 (762)
.|..+++. ..+..+.. .+.. ++|||||++||+..+ ..|.+||+++++......++......+.|+|||
T Consensus 15 ~d~~~g~~~~~l~~~~~~~~~~~~~~-~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg- 92 (396)
T 3c5m_A 15 VDSDTQVKVTRLTPTDIICHRNYFYQ-KCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE- 92 (396)
T ss_dssp ECTTTCCEEEECSCTTSCEECCCTTS-CCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS-
T ss_pred ecCCCCcceEEEecCCCCccceeeec-CcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC-
Confidence 35555543 33444433 3776 999999999998873 489999999888665544444334458899999
Q ss_pred cccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCC
Q 040987 128 PATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (762)
++|+.++.++.|.+||+.+++.......+.... . ++. .+
T Consensus 93 ------~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~------------~g~---~l------------------- 131 (396)
T 3c5m_A 93 ------RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWK-G------------YGT---WV------------------- 131 (396)
T ss_dssp ------SEEEEEETTTEEEEEETTTCCEEEEEECCTTEE-E------------EEE---EE-------------------
T ss_pred ------CEEEEEEcCCcEEEEECCCCCcEEEEecccccC-C------------CCC---EE-------------------
Confidence 677788888899999999988665554332100 0 000 01
Q ss_pred CCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE------EeCCeEEEEEccCchhhhheeeeeeeccC
Q 040987 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI------RKQRKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 208 ~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~------~~~~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
+....+....+|. ..+.++||++.++. ..+..|.+||+.+++.. ....+.
T Consensus 132 ~~~~~~~~~~~~~------------------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~------~~~~~~ 187 (396)
T 3c5m_A 132 ANSDCTKLVGIEI------------------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE------VIHQDT 187 (396)
T ss_dssp ECTTSSEEEEEEE------------------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE------EEEEES
T ss_pred EeccCCccccccc------------------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE------eeccCC
Confidence 1112222222322 12357899998763 34568999999887653 223566
Q ss_pred cCeEEEEEcC-CCcEEEEeecC------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc--
Q 040987 282 KKLTVLAFHP-TQRIVAAGDVT------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH-- 352 (762)
Q Consensus 282 ~~v~~~~~sp-~~~~l~~~~~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-- 352 (762)
..+..+.|+| +++.|+..+.+ ..|.+|++.+++.. .+..+
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------~l~~~~~ 236 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-------------------------------KIKEHAE 236 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-------------------------------ESSCCCT
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-------------------------------EeeccCC
Confidence 7899999999 88877776543 35888887554321 11112
Q ss_pred ccceeEEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEEEEeCC-CCCeEEEEe-------------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLYFTESP-DPSLSSISC------------- 413 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~------------- 413 (762)
...+..++|+|||++|+.++.+ +.|++||+.+++...+..... .. +.|+| ||++++++.
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~ 314 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSY 314 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECCC----------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCCcceeecccccc
Confidence 2357789999999988877654 459999999887654433322 33 88999 999888754
Q ss_pred ---cCCcEEEEEcCCceEEEEEccCCCCCCC-CCcccCceeeEEEeCCCCEEEEeec-Cce--EEEEEcCCCC
Q 040987 414 ---ADNQVHLLKMPSMEIIRSISGIKLPCPL-PEEYKGLCRDIAFNHDGGLVALRAE-NYC--IHFYSLLDDR 479 (762)
Q Consensus 414 ---~d~~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~-dg~--i~i~d~~~~~ 479 (762)
.+..|++||+.+++.. .+..+...... .......+..++|+|||+.|++.+. ++. |+.+++.++.
T Consensus 315 ~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~ 386 (396)
T 3c5m_A 315 NIENDPFLYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESY 386 (396)
T ss_dssp CCCCCCEEEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTC
T ss_pred ccCCCCcEEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccc
Confidence 2468999999887653 33332210000 0000002456789999999887764 344 5555555443
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-18 Score=173.83 Aligned_cols=299 Identities=9% Similarity=0.039 Sum_probs=203.4
Q ss_pred CCcEEEEee------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 292 TQRIVAAGD------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 292 ~~~~l~~~~------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
+++++++.. .|+.|.+||..+++.. ..+..+..+ .++|+|||
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~------------------------------~~i~~g~~p--~i~~spdg 61 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFL------------------------------GMVPTAFNG--HVQVSNDG 61 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEE------------------------------EEEECCEEE--EEEECTTS
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEE------------------------------EEecCCCCC--ceEECCCC
Confidence 566666543 3779999998776533 334444444 89999999
Q ss_pred CEEEEEe----------cCCeEEEEecCCCceeccCC-------CCCCeEEEEeCCCCCeEEEEec--CCcEEEEEcCCc
Q 040987 366 AYLYSGG----------KEGVLVVWQLDTGKKKFLPR-------IGSPLLYFTESPDPSLSSISCA--DNQVHLLKMPSM 426 (762)
Q Consensus 366 ~~l~s~~----------~dg~i~~wd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d~~~~ 426 (762)
++++++. .++.|.+||..+++...... .......++++|||++|+++.. ++.|.+||+.++
T Consensus 62 ~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~ 141 (361)
T 2oiz_A 62 KKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKG 141 (361)
T ss_dssp SEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTT
T ss_pred CEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCC
Confidence 9999886 35789999999887643221 2345677999999999998864 578999999999
Q ss_pred eEEEE-EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCcceeEEE
Q 040987 427 EIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 427 ~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
+.+.. +... ....+.+.|++ ..+++.+.||.+.+|+... ++...... ........ .. ...
T Consensus 142 ~~~~~~i~~~------------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~~~~~~~~---~~-~~~ 204 (361)
T 2oiz_A 142 DYVEDVTAAA------------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR-SKQMFSVK---DD-PIF 204 (361)
T ss_dssp EEEEEEGGGT------------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEE-CCCCSCTT---TS-CBC
T ss_pred cEEEEEecCC------------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeecc-ccceEcCC---CC-ceE
Confidence 88877 5431 22335667765 5677778889999998865 33221111 00000000 11 123
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC----C---CCCceEEEEEcCCCCeEEEEeC-
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP----H---RDAGISAVAFHPNRRAAVSSSY- 575 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~----h---~~~~v~~~~~spd~~~l~~~~~- 575 (762)
+.+++++..++..+ .++.+.++|+....... ........ + .......++|+||++.++++..
T Consensus 205 ~~~~~~g~~~~~~~---------~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~ 274 (361)
T 2oiz_A 205 IAPALDKDKAHFVS---------YYGNVYSADFSGDEVKV-DGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHP 274 (361)
T ss_dssp SCCEECSSEEEEEB---------TTSEEEEEECSSSSCEE-EEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEES
T ss_pred EEecccCCEEEEEe---------CCCeEEEEEecCCCcee-cccccccCccccccccccCCeeEEEEecCCCeEEEEEcc
Confidence 34467787777776 66789999987654321 11100000 0 0111223789999888776643
Q ss_pred ----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC--eEEE
Q 040987 576 ----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN--VLVA 643 (762)
Q Consensus 576 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~--~~~~ 643 (762)
.+.|.+||+.+++.+..++ .+. +.+++|+|||++|++++++.|.+||.+++ +.+.
T Consensus 275 ~~~~~~~~~~~~~v~viD~~t~~~v~~i~-----------~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~~l~~~~ 341 (361)
T 2oiz_A 275 DGKEGTHKFPAAEIWVMDTKTKQRVARIP-----------GRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQPEPKLLR 341 (361)
T ss_dssp SCCTTCTTCCCSEEEEEETTTTEEEEEEE-----------CTT--CCEEEEETTTTEEEEECSSCEEEEECSSSSCEEEE
T ss_pred CCCcccccCCCceEEEEECCCCcEEEEEe-----------cCC--eeEEEECCCCCEEEEeCCCeEEEEECCCCcceeeE
Confidence 3479999999988766552 223 88999999999999887799999999999 9999
Q ss_pred EeccccCceeEEEEeCCCC
Q 040987 644 VIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~ 662 (762)
.+..+...-..++++|||+
T Consensus 342 ~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 342 TIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EETTSCSSEEEEEECCCSC
T ss_pred EeccCCCCcEEEEecCCCC
Confidence 9866666778899999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-17 Score=174.11 Aligned_cols=346 Identities=13% Similarity=0.042 Sum_probs=231.7
Q ss_pred CCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEE
Q 040987 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370 (762)
Q Consensus 291 p~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 370 (762)
|.+.++++...++.|.++|..+++.+. .+.. ...+..+.|+|||+++++
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~------------------------------~i~~-g~~p~~v~~SpDGr~lyv 213 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKT------------------------------VLDT-GYAVHISRLSASGRYLFV 213 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEE------------------------------EEEC-SSCEEEEEECTTSCEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEE------------------------------EEeC-CCCccceEECCCCCEEEE
Confidence 445566777789999999998775442 3322 234668999999999999
Q ss_pred EecCCeEEEEecC--CCceeccCCCCCCeEEEEeC----CCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 371 GGKEGVLVVWQLD--TGKKKFLPRIGSPLLYFTES----PDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 371 ~~~dg~i~~wd~~--~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
++.++.|.+||+. +++.......+.....++++ |||++++++.. ++.+.++|..+.+.+..+...........
T Consensus 214 ~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~ 293 (567)
T 1qks_A 214 IGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE 293 (567)
T ss_dssp EETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC
T ss_pred EcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc
Confidence 9999999999995 66665444445567899999 69999888765 58999999999999888764321110000
Q ss_pred cc-cCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 444 EY-KGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 444 ~~-~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
.+ +..+..+..++++..+ +.....|.|.++|....+.+....... .....++.|+|+|++++++..
T Consensus 294 ~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~---------~~~~~d~~~~pdgr~~~va~~--- 361 (567)
T 1qks_A 294 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA---------ERFLHDGGLDGSHRYFITAAN--- 361 (567)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC---------CSSEEEEEECTTSCEEEEEEG---
T ss_pred ccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec---------cccccCceECCCCCEEEEEeC---
Confidence 01 1256788888876654 444566999999998765332222211 233668899999999988774
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE-EEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA-VSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l-~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.|.++|..+++....+..--..+| .+.-..+ ++|++..+ +++. .++.|.++|..+.+.. ...|.
T Consensus 362 -----~sn~V~ViD~~t~kl~~~i~vgg~~Ph-pg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~----~~~~k 430 (567)
T 1qks_A 362 -----ARNKLVVIDTKEGKLVAIEDTGGQTPH-PGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP----DNAWK 430 (567)
T ss_dssp -----GGTEEEEEETTTTEEEEEEECSSSSBC-CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT----TTBTS
T ss_pred -----CCCeEEEEECCCCcEEEEEeccCcCCC-Cccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc----cccCE
Confidence 678999999999876555432012355 3322222 68875544 4443 4689999999873211 11233
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc----C----CeEEEEeCCCC-----e-EEEEec--------cccCceeEEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA----E----TVITLWDPDRN-----V-LVAVIG--------ETLTPIMNMSF 657 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~----d----~~i~iwd~~~~-----~-~~~~l~--------~~~~~v~~~~~ 657 (762)
...........-..+..+|++++|.+.. | .+|.++|+.+. . ....+. .....+..+.|
T Consensus 431 vv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (567)
T 1qks_A 431 ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEF 510 (567)
T ss_dssp EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEE
T ss_pred EEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeE
Confidence 3222222233334578899999998865 2 49999999877 2 112331 12346899999
Q ss_pred eCCCCEEEEEEcC---CCCeEEEEECCCCceeeEEE
Q 040987 658 VGSSEYLVATSWG---SKPQLSVWNMSKLSISWSYL 690 (762)
Q Consensus 658 s~dg~~l~s~~~d---~~~~v~vwd~~~~~~~~~~~ 690 (762)
+|||+.+..+... ..+.|.|+|.+++++...+.
T Consensus 511 ~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 511 NKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 9999998887431 12349999999999887765
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-18 Score=178.06 Aligned_cols=271 Identities=12% Similarity=0.084 Sum_probs=177.7
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..++.+++++++.++++++.++ +++|+........... .....+. .... .....+...|.+++|
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-----------~~~~~~~---~~~~-~~~~~~~~~v~~l~~ 100 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-----------DDPNKIV---DKVQ-GLLVPMKFPIHHLAL 100 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-----------CCTTCEE---ECCC-CEEECCSSCEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-----------cCccccc---ccCc-cccccCCCcccEEEE
Confidence 4678999999999999998888 8998863221100000 0000000 0000 111235678999999
Q ss_pred ecCCCEEE----EEecCCeEEEEecCCC--------c----eeccCCCCCCeEEEEeCCC-CCeEEEEecCCcEEEEEcC
Q 040987 362 SSDGAYLY----SGGKEGVLVVWQLDTG--------K----KKFLPRIGSPLLYFTESPD-PSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 362 s~~g~~l~----s~~~dg~i~~wd~~~~--------~----~~~~~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~i~d~~ 424 (762)
+|+|++|+ +++.|+.|++||+.++ + ......|...|.+++|+|+ +.+|++++.|+.|++||++
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~ 180 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVT 180 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEES
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcC
Confidence 99999999 7888999999998765 1 1234557889999999998 7899999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
++.......+|. ..+.+++|+|+|++|++++.||.|++||.+ ++....+..... ....|...+.++
T Consensus 181 ~~~~~~~~~~~~----------~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~---~~~~~~~~v~~v 246 (434)
T 2oit_A 181 ETVKVCATLPST----------VAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF---YESDHPVRVLDV 246 (434)
T ss_dssp SSEEEEEEECGG----------GCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT---CCTTSCEEEEEE
T ss_pred CCcceeeccCCC----------CceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc---cCCCCceeEEEE
Confidence 987766666555 689999999999999999999999999998 443333322111 011224589999
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc--eeEEEEEeec-----CCCCCceEEEEEcCCCCeEEEEeC-C
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK--EFTLSTIVYE-----PHRDAGISAVAFHPNRRAAVSSSY-G 576 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~-----~h~~~~v~~~~~spd~~~l~~~~~-d 576 (762)
+|++++.++++.+.. +........+++|++..... ...+...... +. ...-..+.+-++.+++++++. .
T Consensus 247 ~w~~~~~~l~~~~~~--dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~l~dw~l~~v~s~~s 323 (434)
T 2oit_A 247 LWIGTYVFAIVYAAA--DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTE-RQHHYYLSYIEEWDLVLAASAAS 323 (434)
T ss_dssp EEEETTEEEEEEEET--TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSS-SCCCEEEEEEGGGTEEEEEETTC
T ss_pred EEecCceEEEEEccC--CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCC-cCcceeeehhccCCEEEEecCCC
Confidence 999999888765521 00011224699999986532 1222211110 22 222223344466676666554 4
Q ss_pred CcEEEEEcc
Q 040987 577 GDFKVWICN 585 (762)
Q Consensus 577 g~i~iwd~~ 585 (762)
+.|.+....
T Consensus 324 ~dv~vl~~~ 332 (434)
T 2oit_A 324 TEVSILARQ 332 (434)
T ss_dssp SBCEEEEEC
T ss_pred CceeEEEec
Confidence 456666643
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-18 Score=188.49 Aligned_cols=316 Identities=13% Similarity=0.012 Sum_probs=199.5
Q ss_pred ceeeeccccceeEEEEecCCCEEEEE--ecCCeEEEEec-CCCceeccCCCCCCeE---------EEEeC--CCCCe-EE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSG--GKEGVLVVWQL-DTGKKKFLPRIGSPLL---------YFTES--PDPSL-SS 410 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~--~~dg~i~~wd~-~~~~~~~~~~~~~~v~---------~~~~s--~~~~~-l~ 410 (762)
...+.+|...+..++|++++-++++. +.++...+|.. ..++...+..+...+. ...|+ |||+. |+
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 34567789999999999876556665 45788899984 4455555555555544 45554 99998 77
Q ss_pred EEec-CCcEEEEEcC--C-ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----------ceEEEEEcC
Q 040987 411 ISCA-DNQVHLLKMP--S-MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----------YCIHFYSLL 476 (762)
Q Consensus 411 ~~~~-d~~i~i~d~~--~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------g~i~i~d~~ 476 (762)
.+.. +..|+++++. . ++ ...+..... ..+...+..++|+|||+.|++++.+ ..|++||+.
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~-----~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~ 169 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAV-PRPLTPVSA-----VGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLD 169 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCC-CEECSCCCC-----STTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred EEECCCCeEEEEcCCCCCCCC-CEeccCCcc-----CCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECC
Confidence 6654 4567777765 2 33 344443110 0012567899999999999998876 589999998
Q ss_pred C------CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCC--ceeEEEE
Q 040987 477 D------DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQN--KEFTLST 547 (762)
Q Consensus 477 ~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~--~~~~~~~ 547 (762)
+ +.. ..+. ..+ ...+..++|||||++|+..+.+...... ....|++||+. ++. ....+
T Consensus 170 ~~~~~~~~~~-~~l~---~~~------~~~~~~~~~SpDG~~la~~~~~~~~~~~-~~~~i~~~d~~~~g~~~~~~~l-- 236 (662)
T 3azo_A 170 GSAAADRSAV-RELS---DDA------HRFVTGPRLSPDGRQAVWLAWDHPRMPW-EGTELKTARVTEDGRFADTRTL-- 236 (662)
T ss_dssp STTTTCGGGS-EESS---CSC------SSEECCCEECTTSSEEEEEEECTTCCTT-TCEEEEEEEECTTSCEEEEEEE--
T ss_pred CCccccCCce-eEEE---ecC------CCcccCceECCCCCEEEEEECCCCCCCC-CCcEEEEEEECCCCcccccEEe--
Confidence 7 332 2221 011 3467788999999999988732100000 12589999998 452 22222
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCC--cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGG--DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
..+| ...+..++|+|||+++++++.++ .|++||..+++.......... .....-...+..++|+|+++++++
T Consensus 237 --~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~---~~~p~w~~~~~~~~~~~~~~~~~~ 310 (662)
T 3azo_A 237 --LGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEE---FAGPLWTPGMRWFAPLANGLIAVV 310 (662)
T ss_dssp --EEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSB---SSCCCCSTTCCSEEECTTSCEEEE
T ss_pred --CCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccc---ccCccccccCceEeEeCCCEEEEE
Confidence 2344 57889999999999887887788 566666655554333210000 000000011567899999999988
Q ss_pred EcCCeEEEE--eCCCCeEEEEeccccCceeEE-EEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 626 AAETVITLW--DPDRNVLVAVIGETLTPIMNM-SFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 626 ~~d~~i~iw--d~~~~~~~~~l~~~~~~v~~~-~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
++++.++|| |..+++ +..+..|...+..+ +++++.-.+++++.+....|.+||+.+++...
T Consensus 311 ~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 311 HGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp EBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred EEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 865777777 766666 56777777777776 55444333444555544347777887887654
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-17 Score=186.12 Aligned_cols=298 Identities=13% Similarity=0.015 Sum_probs=193.9
Q ss_pred eeeccCcCeEEEEEcCCCcEEEEe--ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 276 ITLHHTKKLTVLAFHPTQRIVAAG--DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 276 ~~~~~~~~v~~~~~sp~~~~l~~~--~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.+.+|...+..++|++++-+++.. +.++...||....+.. ...+..|.
T Consensus 18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------------~~~l~~~~ 67 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGA------------------------------EESALPAP 67 (662)
T ss_dssp HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSC------------------------------EEESSCTT
T ss_pred HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCC------------------------------cceeCCCC
Confidence 345788899999999887666666 5578899998532211 12233333
Q ss_pred ccee---------EEEEe--cCCCE-EEEEec-CCeEEEEecC--C-CceeccCC-----CCCCeEEEEeCCCCCeEEEE
Q 040987 354 SEVS---------VLIFS--SDGAY-LYSGGK-EGVLVVWQLD--T-GKKKFLPR-----IGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 354 ~~v~---------~~~~s--~~g~~-l~s~~~-dg~i~~wd~~--~-~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~ 412 (762)
..+. ...|+ |||++ |+.++. +..|+++++. + ++...+.. +...+..++|+|||+.|+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~ 147 (662)
T 3azo_A 68 WNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCM 147 (662)
T ss_dssp CCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEE
T ss_pred ccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEE
Confidence 3333 45565 99998 776654 5678888877 4 55555555 45578899999999999988
Q ss_pred ecC----------CcEEEEEcCC------ceEEEEEc-cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------
Q 040987 413 CAD----------NQVHLLKMPS------MEIIRSIS-GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-------- 467 (762)
Q Consensus 413 ~~d----------~~i~i~d~~~------~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------- 467 (762)
+.+ ..|++||+.+ ++.. .+. .+. ..+..++|+|||++|++.+.+
T Consensus 148 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~----------~~~~~~~~SpDG~~la~~~~~~~~~~~~~ 216 (662)
T 3azo_A 148 AEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAH----------RFVTGPRLSPDGRQAVWLAWDHPRMPWEG 216 (662)
T ss_dssp EEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCS----------SEECCCEECTTSSEEEEEEECTTCCTTTC
T ss_pred EecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCC----------CcccCceECCCCCEEEEEECCCCCCCCCC
Confidence 776 5899999987 5543 333 322 567889999999999988754
Q ss_pred ceEEEEEcC-CCC--ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCcee--EEEEEEecCCCce
Q 040987 468 YCIHFYSLL-DDR--GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV--CLKFWVSGTQNKE 542 (762)
Q Consensus 468 g~i~i~d~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~--~i~iwd~~~~~~~ 542 (762)
..|++||+. ++. ....+.. .+ ...+..++|+|||+++++++ .++ .|.+||..+++..
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~---~~------~~~~~~~~~spdg~l~~~~~---------~~~~~~l~~~~~~~~~~~ 278 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLG---GP------EEAIAQAEWAPDGSLIVATD---------RTGWWNLHRVDPATGAAT 278 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE---ET------TBCEEEEEECTTSCEEEEEC---------TTSSCEEEEECTTTCCEE
T ss_pred cEEEEEEECCCCcccccEEeCC---CC------CceEcceEECCCCeEEEEEC---------CCCCeEEEEEECCCCcee
Confidence 489999998 452 2222221 11 35688999999999666665 445 6677776555432
Q ss_pred eEEEEEeecCCCCCc--------eEEEEEcCCCCeEEEEeCCCcEEEE--EcccccccccccCCceeeeeecccCCCCeE
Q 040987 543 FTLSTIVYEPHRDAG--------ISAVAFHPNRRAAVSSSYGGDFKVW--ICNDELQQKDLQSSGWSCHAVGSYKKKAMT 612 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~--------v~~~~~spd~~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 612 (762)
... ..+ ... +..++|+|+++++++++. +.++|| |+.+++. ..+ ..+...+.
T Consensus 279 ~l~-----~~~-~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l-----------~~~~~~~~ 339 (662)
T 3azo_A 279 QLC-----RRE-EEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDA-----------AGPWTEWA 339 (662)
T ss_dssp ESS-----CCS-SBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EEC-----------CSSCCEEE
T ss_pred ecc-----ccc-ccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEe-----------cCCCCeEE
Confidence 211 122 211 567899999999999998 999999 5444442 222 23455566
Q ss_pred EEEEcCCCcEEE--EEc-C--CeEEEEeCCCCeEEEEeccccCce
Q 040987 613 AAAFSADGSVLA--VAA-E--TVITLWDPDRNVLVAVIGETLTPI 652 (762)
Q Consensus 613 ~~~~s~dg~~la--~~~-d--~~i~iwd~~~~~~~~~l~~~~~~v 652 (762)
.+ ++++++.++ +++ + ..|+++|+.+++.......+...+
T Consensus 340 ~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~ 383 (662)
T 3azo_A 340 AT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARHTDPV 383 (662)
T ss_dssp EE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCCCCSS
T ss_pred EE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCCcccC
Confidence 55 144554433 334 4 367777888887655444444333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-15 Score=162.18 Aligned_cols=330 Identities=11% Similarity=0.071 Sum_probs=224.5
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcc--cceEEeeecCCcccee
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTS--TGLQISSLEGHKAPVT 118 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~--~~~~~~~l~~h~~~V~ 118 (762)
...++++...++.|.++|..+++.+........+.. ++|||||++|.+++ ++.|.+||+. +++.+.++.... ...
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~-v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~ 243 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EAR 243 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccc-eEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCc
Confidence 456777888899999999999877754444445555 99999999999888 6999999996 888888887544 467
Q ss_pred EEEEe----CCCCcccceeeeEEee-ecCCeEEEEeCCCcceEEEEEecc------------ceEEEeecccccCCcccC
Q 040987 119 TVIVV----PASTPATKILSYCWTA-SLDGTIKYWDFSVPELLKTIDVKF------------SIFSMVIPSLLRQPAQSD 181 (762)
Q Consensus 119 ~v~~s----~~~~~~~~l~~~l~s~-s~d~~i~vWd~~~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~ 181 (762)
.++|+ ||| ++++++ ..+++|.|+|..+.+.++.+.... .+..+.+ +++
T Consensus 244 ~ia~s~~~~pDG-------k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~--------s~~ 308 (567)
T 1qks_A 244 SIETSKMEGWED-------KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA--------SHY 308 (567)
T ss_dssp EEEECCSTTCTT-------TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEE--------CSS
T ss_pred eeEEccccCCCC-------CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEE--------cCC
Confidence 99999 699 455554 456999999999999998876432 1222221 111
Q ss_pred CCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEE
Q 040987 182 EKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLL 259 (762)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~ 259 (762)
. + ..+ +.....|.|.++|....+...............+.|+|||+++.++ .++.|.
T Consensus 309 ~--~--~~v-----------------v~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ 367 (567)
T 1qks_A 309 R--P--EFI-----------------VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 367 (567)
T ss_dssp S--S--EEE-----------------EEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred C--C--EEE-----------------EEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEE
Confidence 1 1 111 1224678999999877654433333444567789999999998644 578999
Q ss_pred EEEccCchhhhheeeee--eeccCcCeEEEEEcCCCcEE-EEee-cCCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 260 IWKVPDVEAERVVMRKI--TLHHTKKLTVLAFHPTQRIV-AAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 260 iwd~~~~~~~~~~~~~~--~~~~~~~v~~~~~sp~~~~l-~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
++|+.+++.. ..... ...|.+.-..+ ++|++..+ +++. .++.|.++|......-
T Consensus 368 ViD~~t~kl~--~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~------------------- 425 (567)
T 1qks_A 368 VIDTKEGKLV--AIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP------------------- 425 (567)
T ss_dssp EEETTTTEEE--EEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT-------------------
T ss_pred EEECCCCcEE--EEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc-------------------
Confidence 9999988753 11111 11343222222 68875544 4442 4689999998653210
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEec-------CCeEEEEecCCC-----c----eec------cCCC
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-------EGVLVVWQLDTG-----K----KKF------LPRI 393 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-------dg~i~~wd~~~~-----~----~~~------~~~~ 393 (762)
...++.++.+......-..+..+|+++++++... ..+|.++|+.+. . .+. +...
T Consensus 426 ----~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~ 501 (567)
T 1qks_A 426 ----DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEG 501 (567)
T ss_dssp ----TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSS
T ss_pred ----cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCC
Confidence 0112334555443333345778999999988653 358999999877 2 111 1123
Q ss_pred CCCeEEEEeCCCCCeEEEEec-----CCcEEEEEcCCceEEEEEccC
Q 040987 394 GSPLLYFTESPDPSLSSISCA-----DNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~~~~~ 435 (762)
...+..+.|+++|+.+.++.. ++.|.++|..+++++..+...
T Consensus 502 ~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 502 QPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp CCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred CcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCCC
Confidence 557899999999999888743 689999999999999888753
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-16 Score=157.97 Aligned_cols=266 Identities=11% Similarity=0.067 Sum_probs=176.9
Q ss_pred ceeEEEEecCCCEEEEEe---------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC---C--cEEE
Q 040987 355 EVSVLIFSSDGAYLYSGG---------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD---N--QVHL 420 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~---------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---~--~i~i 420 (762)
.+..+++ ||++++... .++.|++||+.+++...+ ..+..++|||||++|++...+ + .|++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~ 89 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENATMPRISPDGKKIAFMRANEEKKVSEIWV 89 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCEEEEECTTSSEEEEEEEETTTTEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCCCeEECCCCCEEEEEEeccCCCcceEEE
Confidence 4566777 888887652 256799999998877555 567889999999999987654 2 4888
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------------------------ceEEEE
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------------------------YCIHFY 473 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------------------g~i~i~ 473 (762)
|++.+++....... . . +..++|+|||+.|++++.+ ..|++|
T Consensus 90 ~~~~~g~~~~l~~~-~----------~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 90 ADLETLSSKKILEA-K----------N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EETTTTEEEEEEEE-S----------E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred EECCCCceEEEEcC-C----------C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 89888776554432 1 3 7899999999999888642 579999
Q ss_pred EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 474 SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 474 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
|+.+++.+..+.. . .+..++|+||| +++++..+...........|.++| +++ ...+.. +
T Consensus 158 d~~~~~~~~~l~~-~-----------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~-~~~l~~-----~ 216 (347)
T 2gop_A 158 DTESEEVIEEFEK-P-----------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGK-EEKMFE-----K 216 (347)
T ss_dssp ETTTTEEEEEEEE-E-----------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTE-EEEEEE-----E
T ss_pred ECCCCeEEeeecC-C-----------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCc-eEEecc-----C
Confidence 9987765333332 1 25678999999 666664210000000023455555 332 333321 1
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCC--------cEEEEEcccccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGG--------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLA 624 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la 624 (762)
..+..+ +|||++|+.++.++ .|.+|| +++..... ..+...+.. +.|+ || +++
T Consensus 217 --~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~-----------~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 217 --VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGIL-----------DEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp --ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESS-----------TTCCSEEEEEEEET-TE-EEE
T ss_pred --cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEecc-----------ccCCcccCCccEEc-Cc-EEE
Confidence 233343 99999998887543 577777 44332222 234567776 9999 88 888
Q ss_pred EEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 625 VAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 625 ~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
+++ ++.++|| +.+++....+. +...|.+++|+| .++++++.++. ...+|.++ ++
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~-~~~~v~~~~~s~--~~~~~~~~~~~-~~~l~~~~-g~ 332 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAK-GRHWIMGFDVDE--IVVYLKETATR-LRELFTWD-GE 332 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEEC-SSSEEEEEEESS--SEEEEEECSSS-CCEEEEES-SS
T ss_pred EEecCCcEEEE-EcCCceEEEec-CCCeEEeeeeeC--cEEEEEcCCCC-hHHheEeC-Cc
Confidence 877 8999999 87776654443 567799999999 67777777765 12666665 44
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-16 Score=156.67 Aligned_cols=282 Identities=10% Similarity=0.030 Sum_probs=187.5
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
.|.++.|++++..++..+.++.++.|. ......+..+...+.+++|+++|++++++..++.|.+||..+++.......
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~ 84 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS 84 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCcccc--cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC
Confidence 466778888887777777788888882 222233445556778999999999777788889999999988776654433
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+. ..+.+++++|+++++++...+ +.|.+||..++.....+... . ....+..++++|+|
T Consensus 85 ~~----------~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~--~------~~~~~~~i~~d~~g 146 (333)
T 2dg1_A 85 HK----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL--S------TAYCIDDMVFDSKG 146 (333)
T ss_dssp SS----------SSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS--S------SCCCEEEEEECTTS
T ss_pred CC----------CCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC--c------cCCcccceEECCCC
Confidence 22 578999999999988777666 68999998876543222110 0 13468899999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc-cc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND-EL 588 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~-~~ 588 (762)
+++++..... .....+.|..++..+++... +. .+ ...+..++|+||++.|+.+ +.++.|.+||+.+ +.
T Consensus 147 ~l~v~~~~~~---~~~~~~~l~~~~~~~~~~~~-~~-----~~-~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 147 GFYFTDFRGY---STNPLGGVYYVSPDFRTVTP-II-----QN-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp CEEEEECCCB---TTBCCEEEEEECTTSCCEEE-EE-----EE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred CEEEEecccc---ccCCCceEEEEeCCCCEEEE-ee-----cC-CCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 8877664100 00013556666655443322 21 11 3357889999999866544 4578899999964 22
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC------ceeEEEEeCCC
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT------PIMNMSFVGSS 661 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~------~v~~~~~s~dg 661 (762)
....+. -........ ...+..++++++|+++++.. ++.|.+||.+ ++.+..+..+.. .+.+++|+||+
T Consensus 217 ~~~~~~---~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~dg 291 (333)
T 2dg1_A 217 TIQPFG---ATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPGT 291 (333)
T ss_dssp SEEEEE---EEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTTS
T ss_pred Cccccc---ceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCCC
Confidence 221110 000001111 14677899999999877765 7999999984 666666654432 58899999998
Q ss_pred CEEEEEEcCC
Q 040987 662 EYLVATSWGS 671 (762)
Q Consensus 662 ~~l~s~~~d~ 671 (762)
+.|+.++.++
T Consensus 292 ~~L~v~~~~g 301 (333)
T 2dg1_A 292 NQLIICSNDI 301 (333)
T ss_dssp CEEEEEEECG
T ss_pred CEEEEEeCcc
Confidence 8887766653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=154.90 Aligned_cols=275 Identities=12% Similarity=0.044 Sum_probs=179.7
Q ss_pred cCeEEEEEcCCCcEEEEee---------cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 282 KKLTVLAFHPTQRIVAAGD---------VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
..+..+++ ||++++... .++.|.+|++.+++.. .+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-------------------------------~l--- 58 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-------------------------------FI--- 58 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-------------------------------EE---
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-------------------------------Ec---
Confidence 45667777 888887642 2567999998766421 22
Q ss_pred ccceeEEEEecCCCEEEEEecC---C--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC------------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKE---G--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD------------ 415 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~d---g--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------------ 415 (762)
..+..++|+|||++|+.++.+ + .|++||+.+++...+..... +..++|+|||+.|++++.+
T Consensus 59 -~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 -ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp -ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred -ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 457889999999999987754 2 48888999888765555555 8999999999999887642
Q ss_pred ---------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEE
Q 040987 416 ---------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIH 471 (762)
Q Consensus 416 ---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~ 471 (762)
..|++||+.+++.+..+.. . .+..++|+||| +++++..+ ..|+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-----------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~ 203 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-----------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIY 203 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEE-E-----------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEE
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecC-C-----------CcccccCCCCe-EEEEEecccccccccccccEE
Confidence 5689999998877455443 1 34678999999 77666543 2455
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
++| ++ ....+... ..+.. ++|||++|+..+..... +......|.+|| +++. ..+ ..
T Consensus 204 ~~d--~~-~~~~l~~~-----------~~~~~--~spdg~~l~~~~~~~~~-~~~~~~~l~~~d--~~~~-~~l----~~ 259 (347)
T 2gop_A 204 IWE--DG-KEEKMFEK-----------VSFYA--VDSDGERILLYGKPEKK-YMSEHNKLYIYD--GKEV-MGI----LD 259 (347)
T ss_dssp EEE--TT-EEEEEEEE-----------ESEEE--EEECSSCEEEEECCSSS-CCCSSCEEEEEC--SSCE-EES----ST
T ss_pred EeC--CC-ceEEeccC-----------cceee--ECCCCCEEEEEEccccC-CccccceEEEEC--CCce-Eec----cc
Confidence 555 33 22222211 11233 39999999887632100 000235788888 4332 222 23
Q ss_pred CCCCCceEE-EEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC
Q 040987 552 PHRDAGISA-VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET 629 (762)
Q Consensus 552 ~h~~~~v~~-~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~ 629 (762)
++ ...+.. +.|+ |+ ++++++.++.++|| +.+++..... .+...|.+++|+| .++++++ ++
T Consensus 260 ~~-~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~------------~~~~~v~~~~~s~--~~~~~~~~~~ 321 (347)
T 2gop_A 260 EV-DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIA------------KGRHWIMGFDVDE--IVVYLKETAT 321 (347)
T ss_dssp TC-CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEE------------CSSSEEEEEEESS--SEEEEEECSS
T ss_pred cC-CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEe------------cCCCeEEeeeeeC--cEEEEEcCCC
Confidence 45 667886 9999 88 88899999999999 8744332211 2367789999999 5666665 54
Q ss_pred eE-EEEeCCCCeEEEEeccccCc
Q 040987 630 VI-TLWDPDRNVLVAVIGETLTP 651 (762)
Q Consensus 630 ~i-~iwd~~~~~~~~~l~~~~~~ 651 (762)
.. .||.++ ++ ...+..|...
T Consensus 322 ~~~~l~~~~-g~-~~~lt~~n~~ 342 (347)
T 2gop_A 322 RLRELFTWD-GE-EKQLTDYNDP 342 (347)
T ss_dssp SCCEEEEES-SS-EEECCCTTST
T ss_pred ChHHheEeC-Cc-EEEeccccHh
Confidence 33 566555 54 3456656543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-15 Score=168.94 Aligned_cols=286 Identities=12% Similarity=0.038 Sum_probs=192.8
Q ss_pred cCCCEEEEEecC-----CeEEEEecCCCceecc------C-CCCCCeEEEEeCCCCCeEEEEecCC-----cEEEEEcCC
Q 040987 363 SDGAYLYSGGKE-----GVLVVWQLDTGKKKFL------P-RIGSPLLYFTESPDPSLSSISCADN-----QVHLLKMPS 425 (762)
Q Consensus 363 ~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~------~-~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~d~~~ 425 (762)
|+|++++....+ +.+++.+...++...+ . .+...+..++|||||++|+.+..++ .|++||+.+
T Consensus 81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t 160 (710)
T 2xdw_A 81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG 160 (710)
T ss_dssp EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence 889888765533 2456666555544321 1 1223578899999999999876543 899999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce----------------EEEEEcCCCCceeeEEeecc
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC----------------IHFYSLLDDRGISEVQVCER 489 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~----------------i~i~d~~~~~~~~~~~~~~~ 489 (762)
++........ ..+..++|+|||+.|+.++.++. |++|++.++.....+.....
T Consensus 161 g~~~~~~~~~-----------~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~ 229 (710)
T 2xdw_A 161 AKELPDVLER-----------VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP 229 (710)
T ss_dssp TEEEEEEEEE-----------ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred CCCCcccccC-----------cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence 9877643221 23567999999999999887765 99999987754322322211
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC------CC-ceeEEEEEeecCCCCCceEEEE
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT------QN-KEFTLSTIVYEPHRDAGISAVA 562 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~------~~-~~~~~~~~~~~~h~~~~v~~~~ 562 (762)
.+ ...+..+.|+|||++|+..+.. +...+..|++||+.+ +. ....+ ..+ ...+.. .
T Consensus 230 ~~------~~~~~~~~~SpDg~~l~~~~~~----~~~~~~~l~~~d~~~~~~~~~~~~~~~~l-----~~~-~~~~~~-~ 292 (710)
T 2xdw_A 230 DE------PKWMGGAELSDDGRYVLLSIRE----GCDPVNRLWYCDLQQESNGITGILKWVKL-----IDN-FEGEYD-Y 292 (710)
T ss_dssp TC------TTCEEEEEECTTSCEEEEEEEC----SSSSCCEEEEEEGGGSSSSSCSSCCCEEE-----ECS-SSSCEE-E
T ss_pred CC------CeEEEEEEEcCCCCEEEEEEEc----cCCCccEEEEEECcccccccCCccceEEe-----eCC-CCcEEE-E
Confidence 11 3447789999999999988631 100157899999986 43 23333 234 444444 5
Q ss_pred EcCCCCeEEEEeCCC----cEEEEEcccccccccccCCceeeeeecccCC-CCeEEEEEcCCCcEEEEEc-CC--eEEEE
Q 040987 563 FHPNRRAAVSSSYGG----DFKVWICNDELQQKDLQSSGWSCHAVGSYKK-KAMTAAAFSADGSVLAVAA-ET--VITLW 634 (762)
Q Consensus 563 ~spd~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~dg~~la~~~-d~--~i~iw 634 (762)
|+|+|+.|+..+..+ .|.+||+.++... .|... ..... ..+..++|++++.++++.. |+ .|++|
T Consensus 293 ~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l--~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 293 VTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KWKVL--VPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCEEE--ECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------cceec--cCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence 889999888776533 5999998876421 01111 11112 3678899998888888776 76 46777
Q ss_pred eCCCCeEEEEeccccCceeEEEEeCCCCEEEEE--EcCCCCeEEEEECCCCc
Q 040987 635 DPDRNVLVAVIGETLTPIMNMSFVGSSEYLVAT--SWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 635 d~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~--~~d~~~~v~vwd~~~~~ 684 (762)
++.+|+.+..+..+.+.+..+.++|+++.|+.. +....+.|+.||+.+++
T Consensus 365 ~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 365 DLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 887888778887777778999999999876654 32233459999999987
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-15 Score=153.41 Aligned_cols=278 Identities=11% Similarity=0.017 Sum_probs=188.8
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
..|.+++|++++..++..+.++.++.|.. +....+..+...+.+++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 52 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITA---------------------------------EPWLEISKKGLQLEGLNF 52 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEEC---------------------------------EEEEEEESSCCCEEEEEE
T ss_pred cccceeeecCCccceeEEeecccCccccc---------------------------------ceeEEEeccCccccCcEE
Confidence 35778889999888877777888888832 122445556667789999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~ 436 (762)
+++|+.++++..++.|.+||.++++...+. .....+.+++++++|+++++...+ +.|.+||..++.....+....
T Consensus 53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 132 (333)
T 2dg1_A 53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS 132 (333)
T ss_dssp CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCc
Confidence 999997778888899999999988875433 456789999999999887776655 689999998876554443211
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
....+..++++|+|+++++... .+.|..+|..+++.. .+... ...+..++|+|+|
T Consensus 133 --------~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~----------~~~~~~i~~~~dg 193 (333)
T 2dg1_A 133 --------TAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQN----------ISVANGIALSTDE 193 (333)
T ss_dssp --------SCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEE----------ESSEEEEEECTTS
T ss_pred --------cCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecC----------CCcccceEECCCC
Confidence 1146789999999987776653 356777776554332 22111 2236889999999
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEe---ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIV---YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~---~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
+.|+.+.. .++.|.+|+..+ +.....+.... ..+ ...+..++++++|+++++...++.|.+||..
T Consensus 194 ~~l~v~~~--------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~--~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~- 262 (333)
T 2dg1_A 194 KVLWVTET--------TANRLHRIALEDDGVTIQPFGATIPYYFTG--HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR- 262 (333)
T ss_dssp SEEEEEEG--------GGTEEEEEEECTTSSSEEEEEEEEEEECCS--SSEEEEEEEBTTCCEEEEEETTTEEEEECTT-
T ss_pred CEEEEEeC--------CCCeEEEEEecCCCcCcccccceEEEecCC--CCCCCceEECCCCCEEEEEcCCCEEEEECCC-
Confidence 97665542 567999999974 33332221111 112 1367889999999988888778899999984
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
++....+. ......++...+.+++|+||++.|++++
T Consensus 263 g~~~~~~~-----~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 263 GYPIGQIL-----IPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp SCEEEEEE-----CTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCEEEEEE-----cCCCccccccCcceEEECCCCCEEEEEe
Confidence 33322221 0000001122688999999987776654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-15 Score=153.32 Aligned_cols=257 Identities=8% Similarity=0.048 Sum_probs=180.8
Q ss_pred CCCeEEEEeCCCCCeEEEEecC------------------------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 394 GSPLLYFTESPDPSLSSISCAD------------------------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d------------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
-..+..++++|+|+++++...+ +.|.+||..+++....+.... -...
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~---------~~~p 93 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNL---------FYLP 93 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTT---------CSSE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCc---------cCCc
Confidence 3568899999999888777666 479999999888877654221 1467
Q ss_pred eeEEEeCCCCEEEEeecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCc
Q 040987 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~ 527 (762)
..++++|+|+++++...++.|++||..... .+..+..... ......+...+..++++| +++++++.+. .
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~-~g~~~~~~~~P~~ia~~~~~g~lyv~d~~--------~ 164 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQ-PGSDQNHFCQPTDVAVEPSTGAVFVSDGY--------C 164 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTB-CCCSTTCCSSEEEEEECTTTCCEEEEECS--------S
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCC-CCCCccccCCCcEEEEeCCCCeEEEEeCC--------C
Confidence 899999999988888888999999986542 3333321100 000011134588999999 7777777631 4
Q ss_pred eeEEEEEEecCCCceeEEEEEee-----cCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEcccccccccccCCceeee
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVY-----EPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCH 601 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~-----~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 601 (762)
++.|++|+ ..+.....+...-. .++ ......++++|+ +.++++...++.|++||..+++....+.
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~-~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~------- 235 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQ-FSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIK------- 235 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTE-ESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEC-------
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcc-cCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEe-------
Confidence 68999999 44554444422100 011 234789999998 7777777788999999998776655442
Q ss_pred eecccCCCCeEEEEEcCCCcEEEEE-------c-CCeEEEEeCCCCeEEEEec---cccCceeEEEEeCCCCEEEEEEcC
Q 040987 602 AVGSYKKKAMTAAAFSADGSVLAVA-------A-ETVITLWDPDRNVLVAVIG---ETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 602 ~~~~~~~~~i~~~~~s~dg~~la~~-------~-d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
...+...+..++|+| |..++.. . +..|++||..+++.+..+. ++......++++|||.++++...+
T Consensus 236 --~~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~ 312 (329)
T 3fvz_A 236 --HASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHT 312 (329)
T ss_dssp --CTTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSS
T ss_pred --ccccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCC
Confidence 223456788999999 4433332 2 4589999999999998873 566778999999999877777777
Q ss_pred CCCeEEEEECCC
Q 040987 671 SKPQLSVWNMSK 682 (762)
Q Consensus 671 ~~~~v~vwd~~~ 682 (762)
+. |++|+++.
T Consensus 313 ~~--I~~~~~~~ 322 (329)
T 3fvz_A 313 NT--VWKFTLTE 322 (329)
T ss_dssp CC--EEEEEEEE
T ss_pred CE--EEEEeCCc
Confidence 77 99999864
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-15 Score=145.91 Aligned_cols=248 Identities=9% Similarity=0.121 Sum_probs=173.0
Q ss_pred CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe-CCCCEEEEeec-CceEE
Q 040987 394 GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN-HDGGLVALRAE-NYCIH 471 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~-dg~i~ 471 (762)
-..+.+++++++++++++...++.|.+||.. ++.+..+..... ...+...+..++++ ++++++++... ++.|+
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~----~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK----RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS----STTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC----CcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 3568899999999988887788999999987 666666542110 00112467889995 67766666543 78999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|| .+++.+..+.. .. ...+..++++|+|+++++.. .++.|.+||.. ++....+. ..
T Consensus 104 ~~d-~~g~~~~~~~~---~~------~~~~~~i~~~~~g~l~v~~~---------~~~~i~~~~~~-g~~~~~~~---~~ 160 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGA---TI------LQHPRGVTVDNKGRIIVVEC---------KVMRVIIFDQN-GNVLHKFG---CS 160 (286)
T ss_dssp EEC-TTSCEEEEECT---TT------CSCEEEEEECTTSCEEEEET---------TTTEEEEECTT-SCEEEEEE---CT
T ss_pred EEC-CCCcEEEEecC---cc------CCCceEEEEeCCCCEEEEEC---------CCCEEEEEcCC-CCEEEEeC---CC
Confidence 999 45554433321 11 34578999999999777765 66899999964 33333321 12
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET- 629 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~- 629 (762)
++ ...+..++++|+|+++++...++.|++||.... ....+. ..++...+..++++++|+++++.. ++
T Consensus 161 ~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~~~~---------~~g~~~~p~~i~~d~~G~l~v~~~~~~~ 229 (286)
T 1q7f_A 161 KH-LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQ-YLRQIG---------GEGITNYPIGVGINSNGEILIADNHNNF 229 (286)
T ss_dssp TT-CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCC-EEEEES---------CTTTSCSEEEEEECTTCCEEEEECSSSC
T ss_pred Cc-cCCcEEEEECCCCCEEEEECCCCEEEEEcCCCC-EEEEEc---------cCCccCCCcEEEECCCCCEEEEeCCCCE
Confidence 34 457899999999998888778899999997543 222221 112235788999999999888876 65
Q ss_pred eEEEEeCCCCeEEEEeccccC--ceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 630 VITLWDPDRNVLVAVIGETLT--PIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
.|.+||.+ ++.+..+..+.. .+.+++++|+|+++++ +.|+. |++|++....
T Consensus 230 ~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~--v~v~~~~~~~ 282 (286)
T 1q7f_A 230 NLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYR--LYIYRYVQLA 282 (286)
T ss_dssp EEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTE--EEEEECSCCC
T ss_pred EEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCe--EEEEEccccc
Confidence 99999964 666666655433 3779999999987776 56766 9999986543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-15 Score=151.17 Aligned_cols=262 Identities=9% Similarity=-0.023 Sum_probs=180.3
Q ss_pred CcCeEEEEEcCCCcEEEEeecC------------------------CeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVT------------------------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
.+.+.+++++|+|+++++...+ +.|.+||..+++..
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------- 82 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEIL-------------------- 82 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEE--------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEE--------------------
Confidence 4679999999999988887766 36777777655432
Q ss_pred cccCCccccceeee-ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc--eecc---------CCCCCCeEEEEeCC
Q 040987 337 VRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFL---------PRIGSPLLYFTESP 404 (762)
Q Consensus 337 ~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~--~~~~---------~~~~~~v~~~~~s~ 404 (762)
..+. ++......++++++|+.+++...++.|++||..... ...+ ..+-.....++++|
T Consensus 83 ----------~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~ 152 (329)
T 3fvz_A 83 ----------QSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEP 152 (329)
T ss_dssp ----------EEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECT
T ss_pred ----------eccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeC
Confidence 1221 344568899999999988888888999999987552 2222 12233688999999
Q ss_pred -CCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCce
Q 040987 405 -DPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGI 481 (762)
Q Consensus 405 -~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~ 481 (762)
++.++++.+ .++.|++|+ .+++.+..+.............-.....++++|+ +.++++...++.|++||..+++.+
T Consensus 153 ~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~ 231 (329)
T 3fvz_A 153 STGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV 231 (329)
T ss_dssp TTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE
T ss_pred CCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 777777775 589999999 5577777664322100000011134789999998 777777778899999999877766
Q ss_pred eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEE
Q 040987 482 SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAV 561 (762)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~ 561 (762)
..+..... ...+..++|+| +..++..+.. ......+..|++|+..+++....+.. ..++ .....++
T Consensus 232 ~~~~~~~~--------~~~~~~~~~~p-g~~~~~~g~~--~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~~-~~~p~~i 297 (329)
T 3fvz_A 232 REIKHASF--------GRNVFAISYIP-GFLFAVNGKP--YFGDQEPVQGFVMNFSSGEIIDVFKP--VRKH-FDMPHDI 297 (329)
T ss_dssp EEECCTTT--------TTCEEEEEEET-TEEEEEECCC--CTTCSCCCCEEEEETTTCCEEEEECC--SSSC-CSSEEEE
T ss_pred EEEecccc--------CCCcceeeecC-CEEEEeCCCE--EeccCCCcEEEEEEcCCCeEEEEEcC--CCCc-cCCeeEE
Confidence 55532211 44577899999 4443333211 10111456899999998877665421 1244 6678999
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+++|+|.++++...++.|++|++...
T Consensus 298 a~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 298 VASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred EECCCCCEEEEECCCCEEEEEeCCcc
Confidence 99999988888888999999998643
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-14 Score=143.81 Aligned_cols=248 Identities=12% Similarity=0.151 Sum_probs=175.2
Q ss_pred cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 111 EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 111 ~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
.+|-..+.++++++++ .++++.+.++.|.+||.. ++.+..+....
T Consensus 26 ~g~~~~p~~v~~~~~g-------~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~--------------------------- 70 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQN-------DIIVADTNNHRIQIFDKE-GRFKFQFGECG--------------------------- 70 (286)
T ss_dssp TTCBSCEEEEEECTTC-------CEEEEEGGGTEEEEECTT-SCEEEEECCBS---------------------------
T ss_pred CCccCCCceEEECCCC-------CEEEEECCCCEEEEECCC-CcEEEEecccC---------------------------
Confidence 3566789999999999 577787889999999986 55544332100
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEE-CCCCCEEEEEe--CCeEEEEEccCch
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI-SSSGKYFGIRK--QRKLLIWKVPDVE 267 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-spdg~~la~~~--~~~i~iwd~~~~~ 267 (762)
....+...+..+++ .++++++++.. ++.|.+|+. +++
T Consensus 71 ---------------------------------------~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-~g~ 110 (286)
T 1q7f_A 71 ---------------------------------------KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-YGQ 110 (286)
T ss_dssp ---------------------------------------SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-TSC
T ss_pred ---------------------------------------CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-CCc
Confidence 00112345678899 57887777663 899999994 444
Q ss_pred hhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 268 AERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 268 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.. ..+...+...+.+++++|+|+++++...++.|.+|+..+. .. .
T Consensus 111 ~~----~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~------------------------------~ 155 (286)
T 1q7f_A 111 FV----RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VL------------------------------H 155 (286)
T ss_dssp EE----EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EE------------------------------E
T ss_pred EE----EEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EE------------------------------E
Confidence 22 1222344567899999999998887777899999996432 11 1
Q ss_pred eee--ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC--CCCeEEEEeCCCCCeEEEEecCC-cEEEEE
Q 040987 348 TWH--WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPSLSSISCADN-QVHLLK 422 (762)
Q Consensus 348 ~~~--~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~d~-~i~i~d 422 (762)
.+. .+...+..++++++|+.+++...++.|++||........+... ...+..++++++|+++++...++ .|.+|+
T Consensus 156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~ 235 (286)
T 1q7f_A 156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT 235 (286)
T ss_dssp EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC
T ss_pred EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEEC
Confidence 121 3345678999999998777777789999999864433333222 25688999999998888777775 999999
Q ss_pred cCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCC
Q 040987 423 MPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDD 478 (762)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 478 (762)
.. ++.+..+..+.. ...+.+++++|+|+++++ +.++.|++|+....
T Consensus 236 ~~-g~~~~~~~~~~~--------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 236 QD-GQLISALESKVK--------HAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp TT-SCEEEEEEESSC--------CSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CC-CCEEEEEcccCC--------CCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 64 666666654331 134678999999986666 67899999998654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-15 Score=150.69 Aligned_cols=274 Identities=7% Similarity=-0.050 Sum_probs=187.7
Q ss_pred cCCeEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 373 KEGVLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
.++.|.++|.++++..... ........+.+. +++.+++...++.|.+||..+++.+.++...
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~---------- 83 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGF---------- 83 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECC----------
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCC----------
Confidence 3789999999998874321 233456777773 3455555556789999999999998888532
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
.....++++++++.+++...++.|.+||..+++....+...... ........+++ .++ .+.++..
T Consensus 84 -~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~-----~~~~~p~~i~~-~~~-~lyv~~~------- 148 (328)
T 3dsm_A 84 -TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMD-----MESGSTEQMVQ-YGK-YVYVNCW------- 148 (328)
T ss_dssp -SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCC-----TTTCBCCCEEE-ETT-EEEEEEC-------
T ss_pred -CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCcc-----ccCCCcceEEE-ECC-EEEEEcC-------
Confidence 45688999999854444447899999999988766655432200 00113445666 344 4444431
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC----------CcEEEEEcccccccccccC
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG----------GDFKVWICNDELQQKDLQS 595 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~ 595 (762)
+.++.|.++|..+++....+.. ......++++|+|++++++..+ +.|.++|..+++....+.
T Consensus 149 ~~~~~v~viD~~t~~~~~~i~~-------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~- 220 (328)
T 3dsm_A 149 SYQNRILKIDTETDKVVDELTI-------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK- 220 (328)
T ss_dssp TTCCEEEEEETTTTEEEEEEEC-------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE-
T ss_pred CCCCEEEEEECCCCeEEEEEEc-------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEe-
Confidence 0267999999999876655532 2244678999999977776654 789999998877554331
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEE-----
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATS----- 668 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~----- 668 (762)
. ........++|+||++.|.++.. .|.+||..+++.... +..+......++++|++..|+.+.
T Consensus 221 --------~-~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~ 290 (328)
T 3dsm_A 221 --------F-KLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQ 290 (328)
T ss_dssp --------C-CTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSS
T ss_pred --------c-CCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccc
Confidence 0 11246789999999999888755 899999998876421 222235578999999544444443
Q ss_pred cCCCCeEEEEECCCCceeeEEEEee
Q 040987 669 WGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 669 ~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.++. |.+||.+ |++++.+....
T Consensus 291 ~~~~--V~v~d~~-g~~~~~i~~G~ 312 (328)
T 3dsm_A 291 QQGI--VYRYSPQ-GKLIDEFYVGI 312 (328)
T ss_dssp SEEE--EEEECTT-CCEEEEEEEEE
T ss_pred cCCE--EEEECCC-CCEEEEEEecc
Confidence 4555 9999998 99999887654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-15 Score=147.39 Aligned_cols=254 Identities=14% Similarity=-0.028 Sum_probs=175.6
Q ss_pred CCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEE
Q 040987 393 IGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 471 (762)
......+++|+|+|+ +++++..++.|..|+..++ ...+..+. ..+.+++++++|+++++...++.|.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~----------~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPS----------HHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSC----------SSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCC----------CCcceeeECCCCcEEEEecCCCeEE
Confidence 344567899999998 6777778899999999877 55554433 5678999999999887777778999
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe----eeccc----cCCCceeEEEEEEecCCCcee
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD----IKLAE----EGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~----~~~~~----~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+||..+++.......... . ....+..++++|+|+++++.. ..... ......+.|..++.. + ...
T Consensus 94 ~~d~~~g~~~~~~~~~~~-~-----~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g-~~~ 165 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEG-K-----KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-G-TLS 165 (296)
T ss_dssp EECSTTCCEEEEECEETT-E-----ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-S-CEE
T ss_pred EEcCCCCcEEEEeeccCC-C-----CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-C-CEE
Confidence 999977764322211110 0 023456899999999888732 10000 000012355555544 2 222
Q ss_pred EEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc-cccc-cccccCCceeeeeecccCCCCeEEEEEcCCCc
Q 040987 544 TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN-DELQ-QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 544 ~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 621 (762)
.+ ..+ ......++|+||++.+++.+.++.|++|++. ++.. .... .. ..+...+..++++++|+
T Consensus 166 ~~-----~~~-~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~--------~~-~~~~~~p~~i~~d~~G~ 230 (296)
T 3e5z_A 166 AP-----IRD-RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGV--------HF-TVEPGKTDGLRVDAGGL 230 (296)
T ss_dssp EE-----ECC-CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEE--------EE-CCSSSCCCSEEEBTTSC
T ss_pred Ee-----ecC-CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCe--------Ee-eCCCCCCCeEEECCCCC
Confidence 22 233 5567899999999998777778899999997 3332 1000 01 12345667899999999
Q ss_pred EEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEE-eCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 622 VLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSF-VGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 622 ~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~-s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
+.++. ++.|.+||.+ ++.+..+..+.. +.+++| +||++.|++++.++ +.-++..+.++..
T Consensus 231 l~v~~-~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~---l~~~~~~~~~~~~ 291 (296)
T 3e5z_A 231 IWASA-GDGVHVLTPD-GDELGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE---FWSIETNVRGLEH 291 (296)
T ss_dssp EEEEE-TTEEEEECTT-SCEEEEEECSSC-CCEEEEESTTSCEEEEEETTE---EEEEECSCCBCCC
T ss_pred EEEEc-CCeEEEECCC-CCEEEEEECCCC-ceeEEEECCCCCEEEEEcCCe---EEEEEcccccccc
Confidence 77766 8899999987 778888877777 899999 58999999998876 8888888877654
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-15 Score=147.46 Aligned_cols=300 Identities=11% Similarity=0.051 Sum_probs=199.8
Q ss_pred EEEcCCCcEEEEeec-----CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 287 LAFHPTQRIVAAGDV-----TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 287 ~~~sp~~~~l~~~~~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....|+++.+++... ++.|.+.|..+.+.+ ..+.....+ . +++
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~------------------------------~~I~vG~~P-~-va~ 85 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVI------------------------------GMIDGGFLP-N-PVV 85 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEE------------------------------EEEEECSSC-E-EEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEE------------------------------EEEECCCCC-c-EEE
Confidence 455789998887755 679999999877544 333333333 3 999
Q ss_pred ecCCCEEEEEe----------cCCeEEEEecCCCceeccCCC--------CCCeEEEEeCCCCCeEEEEec--CCcEEEE
Q 040987 362 SSDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRI--------GSPLLYFTESPDPSLSSISCA--DNQVHLL 421 (762)
Q Consensus 362 s~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~--d~~i~i~ 421 (762)
+|||++++.+. .++.|.+||..+.+....... ......++++|||++++++.. ++.|.++
T Consensus 86 spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVI 165 (386)
T 3sjl_D 86 ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVV 165 (386)
T ss_dssp CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEE
Confidence 99999988775 357899999999887532211 224567999999999998864 6899999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC-CCceeeEEeecccccCCCCccee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD-DRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
|+.+++.+.++.... ....+....+.+++.+.||.+.+.++.+ ++..... .....+. ...
T Consensus 166 D~~t~~vv~tI~v~g-------------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~---~~~~~~~---~~~ 226 (386)
T 3sjl_D 166 DLEGKAFKRMLDVPD-------------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH---TEVFHPE---DEF 226 (386)
T ss_dssp ETTTTEEEEEEECCS-------------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE---CCCCSCT---TSC
T ss_pred ECCCCcEEEEEECCC-------------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEee---cceeccc---ccc
Confidence 999999998885421 1223333455666777888888888876 4432111 1111111 111
Q ss_pred E-EEEEEe-cCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee--EEEEE----eecCCCCCceEEEEEcCCCCeEEE
Q 040987 501 V-TLVALS-QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF--TLSTI----VYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 501 v-~~~~~s-p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~--~~~~~----~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
+ ...+|. ++|+++... .++.+.+.|..+..... .+... ...+-..+....++++|+++.++.
T Consensus 227 ~~~~~~~~~~dG~~~~vs----------~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV 296 (386)
T 3sjl_D 227 LINHPAYSQKAGRLVWPT----------YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL 296 (386)
T ss_dssp BCSCCEEETTTTEEEEEB----------TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred ccccceeEcCCCcEEEEe----------CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEE
Confidence 1 123664 678665544 55789999997664321 11100 000100223445788999988877
Q ss_pred EeC----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc--CCeEEEEeCCCC
Q 040987 573 SSY----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA--ETVITLWDPDRN 639 (762)
Q Consensus 573 ~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~--d~~i~iwd~~~~ 639 (762)
... .+.|.+.|+.+++.+..++ -...+..+++++|++ +|++.+ ++.|.++|..++
T Consensus 297 ~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~------------vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 297 LVDQRDEWRHKTASRFVVVLDAKTGERLAKFE------------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEE------------EEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EeccccccccCCCCCEEEEEECCCCeEEEEEE------------CCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 643 2469999999998877663 134678999999997 666654 899999999999
Q ss_pred eEEEEeccccCceeEEEEeCC
Q 040987 640 VLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 640 ~~~~~l~~~~~~v~~~~~s~d 660 (762)
+.+.++... +.-+.|.+++|
T Consensus 365 k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 365 EELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp CEEEEECCC-CSSCCEEEECC
T ss_pred cEEEEecCC-CCCceeEECCc
Confidence 999988643 33456777776
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-14 Score=162.07 Aligned_cols=277 Identities=10% Similarity=-0.000 Sum_probs=187.2
Q ss_pred ecCCCEEEEEe-C-----CEEEEEEcccceEEeee------cCCccceeEEEEeCCCCcccceeeeEEeeecC-C----e
Q 040987 82 SNDVKRLLVCT-S-----NTVSIFSTSTGLQISSL------EGHKAPVTTVIVVPASTPATKILSYCWTASLD-G----T 144 (762)
Q Consensus 82 s~dg~~la~~~-~-----~~i~iwd~~~~~~~~~l------~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d-~----~ 144 (762)
+|||++++... + +.+.+.+..+++....+ .+|...+..++||||| ++||.++.+ | +
T Consensus 80 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg-------~~la~~~~~~G~~~~~ 152 (710)
T 2xdw_A 80 FKKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDG-------EYFAYGLSASGSDWVT 152 (710)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTS-------SEEEEEEEETTCSCEE
T ss_pred EEECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCC-------CEEEEEEcCCCCceEE
Confidence 49999999876 3 25566665555433222 2455678999999999 455444332 2 8
Q ss_pred EEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCc
Q 040987 145 IKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTES 224 (762)
Q Consensus 145 i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~ 224 (762)
|++||+.+|+.+.....
T Consensus 153 i~v~d~~tg~~~~~~~~--------------------------------------------------------------- 169 (710)
T 2xdw_A 153 IKFMKVDGAKELPDVLE--------------------------------------------------------------- 169 (710)
T ss_dssp EEEEETTTTEEEEEEEE---------------------------------------------------------------
T ss_pred EEEEECCCCCCCccccc---------------------------------------------------------------
Confidence 99999998876542110
Q ss_pred cccceeeeccCCCceEEEECCCCCEEEEE-eCCe----------------EEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 225 RLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRK----------------LLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~----------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
...+..++|+|||+.|+.+ .++. |++|++.+++.....+ .....|...+..+
T Consensus 170 ----------~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v-~~~~~~~~~~~~~ 238 (710)
T 2xdw_A 170 ----------RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC-AEFPDEPKWMGGA 238 (710)
T ss_dssp ----------EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE-ECCTTCTTCEEEE
T ss_pred ----------CcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE-eccCCCCeEEEEE
Confidence 0114568999999999854 3433 9999998876420011 1112245567899
Q ss_pred EEcCCCcEEEEeec-----CCeEEEEeccC------CceeecccccccccccccccCCCCcccCCccccceeeeccccce
Q 040987 288 AFHPTQRIVAAGDV-----TGRILIWRGFG------DRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV 356 (762)
Q Consensus 288 ~~sp~~~~l~~~~~-----dg~v~vw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 356 (762)
.|+|||++|+..+. +..|++||+.+ +.. ....+..+...+
T Consensus 239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-----------------------------~~~~l~~~~~~~ 289 (710)
T 2xdw_A 239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-----------------------------KWVKLIDNFEGE 289 (710)
T ss_dssp EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-----------------------------CCEEEECSSSSC
T ss_pred EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-----------------------------ceEEeeCCCCcE
Confidence 99999999988764 56899999865 210 123445555555
Q ss_pred eEEEEecCCCEEEEEecC----CeEEEEecCCCce---eccCCCCC--CeEEEEeCCCCCeEEEEecCCc--EEEEEcCC
Q 040987 357 SVLIFSSDGAYLYSGGKE----GVLVVWQLDTGKK---KFLPRIGS--PLLYFTESPDPSLSSISCADNQ--VHLLKMPS 425 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~d----g~i~~wd~~~~~~---~~~~~~~~--~v~~~~~s~~~~~l~~~~~d~~--i~i~d~~~ 425 (762)
.. .|+++|+.|+..+.. +.|.+||+.++.. ..+..+.. .+..++|++++.++++...++. |.+|++.+
T Consensus 290 ~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~ 368 (710)
T 2xdw_A 290 YD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT 368 (710)
T ss_dssp EE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT
T ss_pred EE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC
Confidence 44 488999888876653 4699999988742 33333333 5778899887888888877874 66778767
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCC
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDR 479 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~ 479 (762)
++.+..+..+. +.+..+.++|+++.++... ..+.++.||+.+++
T Consensus 369 g~~~~~l~~~~----------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 369 GALLKIFPLEV----------GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp CCEEEEECCCS----------SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred CCEEEecCCCC----------ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 87777776553 6788899999998776543 34789999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-13 Score=135.51 Aligned_cols=283 Identities=12% Similarity=0.029 Sum_probs=195.2
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
.+...+.+++++++|+.+++...++.|.+||.. ++.... ......+..++++++|.++++...++.|..|+.. ++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~ 89 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII 89 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE
Confidence 344678999999999877776667899999988 655432 2345678999999999887776667889999986 332
Q ss_pred EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 429 IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
..+.... ....+..++++++++++++...++.|..||. +++.. .+..... ...+..+++++
T Consensus 90 -~~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~--------~~~~~~i~~~~ 150 (299)
T 2z2n_A 90 -KEYTLPN--------PDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNK--------GSYPSFITLGS 150 (299)
T ss_dssp -EEEECSS--------TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSST--------TCCEEEEEECT
T ss_pred -EEEeCCC--------cCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCC--------CCCCceEEEcC
Confidence 2232110 0146789999999988887777889999998 44322 2211111 34588999999
Q ss_pred CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc
Q 040987 509 DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588 (762)
Q Consensus 509 ~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~ 588 (762)
+|+.+++.. ..+.|..||. +++... +. .... ...+.+++++++|+++++...++.|.+||. ++.
T Consensus 151 ~g~l~v~~~---------~~~~i~~~~~-~g~~~~-~~---~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~ 214 (299)
T 2z2n_A 151 DNALWFTEN---------QNNAIGRITE-SGDITE-FK---IPTP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE 214 (299)
T ss_dssp TSCEEEEET---------TTTEEEEECT-TCCEEE-EE---CSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred CCCEEEEeC---------CCCEEEEEcC-CCcEEE-ee---CCCC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCc
Confidence 998777664 5678999998 544322 11 1233 456889999999997777666788999998 554
Q ss_pred ccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE-eccccCceeEEEEeCCCCEEEE
Q 040987 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV-IGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~dg~~l~s 666 (762)
..... ...+...+.+++++++|++.++.. ++.|..||. +++.... +..+...+.++++ ++|++.++
T Consensus 215 ~~~~~----------~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 215 ITEFK----------IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFA 282 (299)
T ss_dssp EEEEE----------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEE
T ss_pred EEEEE----------CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEE
Confidence 32210 122456788999999999777664 799999998 4553322 3344567899999 88887776
Q ss_pred EEcCCCCeEEEEECCCCce
Q 040987 667 TSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 667 ~~~d~~~~v~vwd~~~~~~ 685 (762)
.+.++ |..++.+++++
T Consensus 283 ~~~~~---l~~~~~~~~~~ 298 (299)
T 2z2n_A 283 MECDK---IGKLTLIKDNM 298 (299)
T ss_dssp ETTTE---EEEEEEC----
T ss_pred ecCCc---EEEEEcCcccC
Confidence 65444 88888876543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-13 Score=140.52 Aligned_cols=293 Identities=9% Similarity=-0.058 Sum_probs=191.4
Q ss_pred EecCCCEEEEEec--CC---eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCC
Q 040987 361 FSSDGAYLYSGGK--EG---VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPS 425 (762)
Q Consensus 361 ~s~~g~~l~s~~~--dg---~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~ 425 (762)
..|++++++.... .. +|.++|..+++.......+... .++++|||++++++. .++.|.+||..+
T Consensus 28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t 106 (373)
T 2mad_H 28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT 106 (373)
T ss_pred CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence 4477877777653 22 8899999998876443333334 899999999999885 357899999999
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceee-EEeecccccCCCCcceeEE
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~ 502 (762)
++.+..+....... . ........++++|||++|+++.. ++.|.++| .+++.+.. +.. . .
T Consensus 107 ~~~~~~i~~~~~~~-~--~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~-----------~---~ 168 (373)
T 2mad_H 107 FLPIADIELPDAPR-F--DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS-----------P---T 168 (373)
T ss_pred CcEEEEEECCCccc-c--ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC-----------C---c
Confidence 88887764320000 0 00023457999999999998874 47899999 88876655 332 1 1
Q ss_pred EEEEecCCCe-EEEEeeeccccCCCceeEEEEEEecCCCceeEEEE-EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 503 LVALSQDGSL-MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST-IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 503 ~~~~sp~g~~-l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
++.+.|+++. +++.+ .|+.+.+++. +++....... ..+.+. ..-.....+.+++..++..+..+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~---------~dg~~~~vd~-~g~~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~v~ 237 (373)
T 2mad_H 169 CYHIHPGAPSTFYLLC---------AQGGLAKTDH-AGGAAGAGLVGAMLTAA-QNLLTQPAQANKSGRIVWPVYSGKIL 237 (373)
T ss_pred eEEEEeCCCceEEEEc---------CCCCEEEEEC-CCcEEEEEeccccccCC-cceeecceeEecCCEEEEEcCCceEE
Confidence 2455666643 34444 7788999999 7665432211 001111 11123356677766655555788999
Q ss_pred EEEcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEe
Q 040987 581 VWICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l 645 (762)
+.|+.+....... .|.... ...........++++||++.+.++. ++.|.++|..+++.+..+
T Consensus 238 vid~~~~~~~v~~---~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i 314 (373)
T 2mad_H 238 QADISAAGATNKA---PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEeccCCcceEee---eeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE
Confidence 9998755322110 111000 0000123344588999999877753 257999999999999888
Q ss_pred ccccCceeEEEEeCCCC-EEEEEE-cCCCCeEEEEECCCCceeeEE
Q 040987 646 GETLTPIMNMSFVGSSE-YLVATS-WGSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~-~l~s~~-~d~~~~v~vwd~~~~~~~~~~ 689 (762)
.. .....+++|+|||+ +++++. .++. |.+||+.+++.+..+
T Consensus 315 ~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~--V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 315 SL-GHDVDAISVAQDGGPDLYALSAGTEV--LHIYDAGAGDQDQST 357 (373)
T ss_pred EC-CCCcCeEEECCCCCeEEEEEcCCCCe--EEEEECCCCCEEeee
Confidence 53 33578999999999 777776 3666 999999999988764
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.8e-15 Score=164.30 Aligned_cols=276 Identities=10% Similarity=-0.068 Sum_probs=180.1
Q ss_pred eecCCCEEEEEe-C-----CEEEEEEcccceEEeee------cCCccceeEEEEeCCCCcccceeeeEE-----eeecCC
Q 040987 81 FSNDVKRLLVCT-S-----NTVSIFSTSTGLQISSL------EGHKAPVTTVIVVPASTPATKILSYCW-----TASLDG 143 (762)
Q Consensus 81 ~s~dg~~la~~~-~-----~~i~iwd~~~~~~~~~l------~~h~~~V~~v~~s~~~~~~~~l~~~l~-----s~s~d~ 143 (762)
.+|||+++++.. + +.|.+.+...++....+ .+|...+.+++||||| ++|| +|+.+.
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG-------~~la~~~~~~G~~~~ 147 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDG-------KKVAFAQKPNAADEA 147 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTS-------SEEEEEEEETTCSCC
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCC-------CEEEEEECCCCCceE
Confidence 469999999887 3 23455555455433333 2566789999999999 4444 344457
Q ss_pred eEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCC
Q 040987 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223 (762)
Q Consensus 144 ~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~ 223 (762)
+|++||+.+|+.+. .
T Consensus 148 ~i~v~dl~tg~~~~--~--------------------------------------------------------------- 162 (695)
T 2bkl_A 148 VLHVIDVDSGEWSK--V--------------------------------------------------------------- 162 (695)
T ss_dssp EEEEEETTTCCBCS--S---------------------------------------------------------------
T ss_pred EEEEEECCCCCCcC--C---------------------------------------------------------------
Confidence 88899888876420 0
Q ss_pred ccccceeeeccCCCceEEEECCCCCEEEEE-eCCe-------------EEEEEccCchhhhheeeeeeeccCcCeEEEEE
Q 040987 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRK-------------LLIWKVPDVEAERVVMRKITLHHTKKLTVLAF 289 (762)
Q Consensus 224 ~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~-------------i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 289 (762)
.... ......++|+|||+.|+.+ .+.. |++|++.+++... ........+...+..+.|
T Consensus 163 -----~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~-~lv~~~~~~~~~~~~~~~ 234 (695)
T 2bkl_A 163 -----DVIE--GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD-TVVHERTGDPTTFLQSDL 234 (695)
T ss_dssp -----CCBS--CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-EEEECCCCCTTCEEEEEE
T ss_pred -----cccC--cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-eEEEecCCCCEEEEEEEE
Confidence 0000 0112567999999999854 4443 9999999876421 111122234567889999
Q ss_pred cCCCcEEEEeecCC----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 290 HPTQRIVAAGDVTG----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 290 sp~~~~l~~~~~dg----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
||||++|+..+.++ .|++|+..+++ ...+..+...+....+ ++|
T Consensus 235 SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-------------------------------~~~l~~~~~~~~~~~~-~~g 282 (695)
T 2bkl_A 235 SRDGKYLFVYILRGWSENDVYWKRPGEKD-------------------------------FRLLVKGVGAKYEVHA-WKD 282 (695)
T ss_dssp CTTSCCEEEEEEETTTEEEEEEECTTCSS-------------------------------CEEEEECSSCCEEEEE-ETT
T ss_pred CCCCCEEEEEEeCCCCceEEEEEcCCCCc-------------------------------eEEeecCCCceEEEEe-cCC
Confidence 99999998877665 66666543321 2344455556666666 666
Q ss_pred CEEEEEec----CCeEEEEecCCCce---eccCC-C-CCCeEEEEeCCCCCeEEEEecCCcEEEEEcC-CceEEEEEccC
Q 040987 366 AYLYSGGK----EGVLVVWQLDTGKK---KFLPR-I-GSPLLYFTESPDPSLSSISCADNQVHLLKMP-SMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~----dg~i~~wd~~~~~~---~~~~~-~-~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~ 435 (762)
+ ++..+. ++.|.+||+.+++. ..+.. . ...+..++++ ++.++++...++..++|.+. +++....+..+
T Consensus 283 ~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 283 R-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp E-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred c-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 6 554443 57899999988763 33333 2 3457788888 67788888888887777654 35555555433
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEee----cCceEEEEEcCCCC
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRA----ENYCIHFYSLLDDR 479 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~i~d~~~~~ 479 (762)
. .+.+..++++|+++.++... ..++|++||+.+++
T Consensus 361 ~---------~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 G---------VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp S---------SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred C---------CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 1 15778888999998777443 34789999998876
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-14 Score=143.24 Aligned_cols=265 Identities=11% Similarity=0.035 Sum_probs=176.1
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~ 433 (762)
....+.+. +++..++...++.|.+||..+++.............++++++++ ++++. .++.|.+||..+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCeEEEEEE
Confidence 35667764 44555555667899999999998855444556788999999984 55554 78999999999998887765
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
..... ........+++ . +..+.++. .++.|.++|+.+++....+... .....++++|+|+
T Consensus 123 ~g~~~-----~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-----------~~p~~i~~~~dG~ 184 (328)
T 3dsm_A 123 CPDMD-----MESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-----------IQPTSLVMDKYNK 184 (328)
T ss_dssp CTTCC-----TTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-----------SCBCCCEECTTSE
T ss_pred cCCcc-----ccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-----------CCccceEEcCCCC
Confidence 43200 00014456777 3 44444444 4789999999998776665432 2246788999999
Q ss_pred eEEEEeeeccccC-CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc
Q 040987 512 LMSTVDIKLAEEG-IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 512 ~l~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
++++......... .+..+.|.++|..+++....+. .+. ......++|+||+++|+++.. .|.+||..+++..
T Consensus 185 l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~----~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 185 MWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFK----FKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp EEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEE----CCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred EEEEECCCccCCccccCCceEEEEECCCCeEEEEEe----cCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 7777651000000 0002789999998886554442 121 236789999999999888754 8999999887753
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEE----c-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVA----A-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~----~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
.... ..........++++| ++++.++. . ++.|.+||.+ ++.+..+..... -..++|
T Consensus 258 ~~~~---------~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 258 VRPF---------LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp SSCS---------BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred eeee---------ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 2110 011145678999999 56666665 4 7899999998 888887753322 244544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-14 Score=141.65 Aligned_cols=300 Identities=12% Similarity=-0.003 Sum_probs=193.7
Q ss_pred EEEecCCCEEEEEec-----CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEc
Q 040987 359 LIFSSDGAYLYSGGK-----EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKM 423 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~-----dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~ 423 (762)
....|+++.++.... ++.|.+.|..+++.......+.... ++++|||++++++. .++.|.+||.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPN-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCE-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCc-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 345689999888765 5799999999998864433333334 99999999998875 3578999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+++.+..+.-..... .........++|+|||++++++.. ++.|.++|+.+++.+.++.... .
T Consensus 117 ~t~~v~~~I~v~~g~r---~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----------~- 181 (386)
T 3sjl_D 117 VTLLPTADIELPDAPR---FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----------C- 181 (386)
T ss_dssp TTCCEEEEEEETTCCC---CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------E-
T ss_pred CCCeEEEEEECCCccc---cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----------c-
Confidence 9999988875321000 000023567999999999888864 6899999999998888775421 0
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC-CCceeEEEEEeecCCCCCceE-EEEEc-CCCCeEEEEeCCCc
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNKEFTLSTIVYEPHRDAGIS-AVAFH-PNRRAAVSSSYGGD 578 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~h~~~~v~-~~~~s-pd~~~l~~~~~dg~ 578 (762)
...+....+.+++.+ .||.+.+.++.+ ++..... ...+... ...+. ...|. ++|++++ .+.+|.
T Consensus 182 -~~~~P~g~~~~~~~~---------~DG~~~~v~~~~~g~v~~~~-~~~~~~~-~~~~~~~~~~~~~dG~~~~-vs~~g~ 248 (386)
T 3sjl_D 182 -YHIFPTAPDTFFMHC---------RDGSLAKVAFGTEGTPEITH-TEVFHPE-DEFLINHPAYSQKAGRLVW-PTYTGK 248 (386)
T ss_dssp -EEEEEEETTEEEEEE---------TTSCEEEEECCSSSCCEEEE-CCCCSCT-TSCBCSCCEEETTTTEEEE-EBTTSE
T ss_pred -ceeecCCCceeEEEC---------CCCCEEEEECCCCCeEEEee-cceeccc-cccccccceeEcCCCcEEE-EeCCCE
Confidence 112222334444444 556666666654 3321111 0011111 12221 24554 6776554 666899
Q ss_pred EEEEEcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEE
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVA 643 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~ 643 (762)
+++.|..+......- .|.... ...........++++++++.+.+.. ...|.+.|+.+++.+.
T Consensus 249 V~v~d~~~~~~~v~~---~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~ 325 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLP---AVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLA 325 (386)
T ss_dssp EEEEECTTSSCEECC---CEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE
T ss_pred EEEEECCCCcceeec---ceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEE
Confidence 999999766432111 111000 0000123344578899999888763 1579999999999999
Q ss_pred EeccccCceeEEEEeCCCC-EEEEEEc-CCCCeEEEEECCCCceeeEEEEee
Q 040987 644 VIGETLTPIMNMSFVGSSE-YLVATSW-GSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 644 ~l~~~~~~v~~~~~s~dg~-~l~s~~~-d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
.+... .++++++|++|++ +|+++.. ++. |.++|..+++.+.++....
T Consensus 326 ~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~--VsViD~~t~k~~~~i~~~~ 374 (386)
T 3sjl_D 326 KFEMG-HEIDSINVSQDEKPLLYALSTGDKT--LYIHDAESGEELRSVNQLG 374 (386)
T ss_dssp EEEEE-EEECEEEECSSSSCEEEEEETTTTE--EEEEETTTCCEEEEECCCC
T ss_pred EEECC-CCcceEEECCCCCeEEEEEcCCCCe--EEEEECCCCcEEEEecCCC
Confidence 88643 3688999999997 6666544 555 9999999999998876654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-14 Score=141.61 Aligned_cols=252 Identities=10% Similarity=-0.000 Sum_probs=173.9
Q ss_pred cceeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
.+..+..+.....+++|+|+|+ .++++..++.|..||..++ ...+......+.+++++++|+++++...++.|.+||.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~ 97 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE 97 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence 3455666667788999999998 6777778899999999988 5555556677899999999998777666789999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE----ee-------------cCceEEEEEcCCCCceeeEEe
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL----RA-------------ENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~-------------~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.+++........... ....+..++++|+|+++++ ++ ..+.|..++.. ++ ...+..
T Consensus 98 ~~g~~~~~~~~~~~~------~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~ 169 (296)
T 3e5z_A 98 PGGEWESIADSFEGK------KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIR 169 (296)
T ss_dssp TTCCEEEEECEETTE------ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEEC
T ss_pred CCCcEEEEeeccCCC------CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeec
Confidence 887765443221100 0134678999999998887 32 13456666654 32 222211
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEEEeecCCCCCceEEEEEcC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
. ......++|+|+|+.+++.. .++.|.+|++. ++........ +..+ ...+.++++++
T Consensus 170 ~----------~~~~~gi~~s~dg~~lv~~~---------~~~~i~~~~~~~~g~~~~~~~~--~~~~-~~~p~~i~~d~ 227 (296)
T 3e5z_A 170 D----------RVKPNGLAFLPSGNLLVSDT---------GDNATHRYCLNARGETEYQGVH--FTVE-PGKTDGLRVDA 227 (296)
T ss_dssp C----------CSSEEEEEECTTSCEEEEET---------TTTEEEEEEECSSSCEEEEEEE--ECCS-SSCCCSEEEBT
T ss_pred C----------CCCCccEEECCCCCEEEEeC---------CCCeEEEEEECCCCcCcCCCeE--eeCC-CCCCCeEEECC
Confidence 1 33468899999999985554 67899999997 3332011111 1234 55677899999
Q ss_pred CCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE-cCCCcEEEEEcCCeEEEEeCCCCeEE
Q 040987 566 NRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF-SADGSVLAVAAETVITLWDPDRNVLV 642 (762)
Q Consensus 566 d~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-s~dg~~la~~~d~~i~iwd~~~~~~~ 642 (762)
+|+++++. ++.|.+||.. ++....+ ..+.. +++++| +|+++.|++++.+.+.-++.++.++.
T Consensus 228 ~G~l~v~~--~~~v~~~~~~-g~~~~~~-----------~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD-GDELGRV-----------LTPQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNVRGLE 290 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT-SCEEEEE-----------ECSSC-CCEEEEESTTSCEEEEEETTEEEEEECSCCBCC
T ss_pred CCCEEEEc--CCeEEEECCC-CCEEEEE-----------ECCCC-ceeEEEECCCCCEEEEEcCCeEEEEEccccccc
Confidence 99877666 7889999986 4433322 12334 889999 68999999888667777777766543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=167.60 Aligned_cols=287 Identities=11% Similarity=-0.019 Sum_probs=182.2
Q ss_pred EecCCCEEEEEecCC-----eEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEec-----CCcEEEEEc
Q 040987 361 FSSDGAYLYSGGKEG-----VLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCA-----DNQVHLLKM 423 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg-----~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~ 423 (762)
.+|+|++++....++ .|++.+...++...+. .+...+..++|||||++|+.+.. +..|++||+
T Consensus 75 p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl 154 (695)
T 2bkl_A 75 PSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDV 154 (695)
T ss_dssp CEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEET
T ss_pred CEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEEC
Confidence 347899888776543 3555565555543332 23336889999999999986533 357999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCce-------------EEEEEcCCCCceeeEEeeccc
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC-------------IHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-------------i~i~d~~~~~~~~~~~~~~~~ 490 (762)
.+++.+. ..+.. ......++|+|||+.|+.++.+.. |++|++.++.....+......
T Consensus 155 ~tg~~~~--~~~~~--------~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 155 DSGEWSK--VDVIE--------GGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp TTCCBCS--SCCBS--------CCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred CCCCCcC--CcccC--------cccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 9987531 11110 011267999999999999987665 999999887643233222211
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
+ ...+..+.|+|||++|+..+.+.. ....|++|+..++. ...+. .+ ...+....+ ++|+ +
T Consensus 225 ~------~~~~~~~~~SpDG~~l~~~~~~~~-----~~~~l~~~~~~~~~-~~~l~-----~~-~~~~~~~~~-~~g~-l 284 (695)
T 2bkl_A 225 D------PTTFLQSDLSRDGKYLFVYILRGW-----SENDVYWKRPGEKD-FRLLV-----KG-VGAKYEVHA-WKDR-F 284 (695)
T ss_dssp C------TTCEEEEEECTTSCCEEEEEEETT-----TEEEEEEECTTCSS-CEEEE-----EC-SSCCEEEEE-ETTE-E
T ss_pred C------CEEEEEEEECCCCCEEEEEEeCCC-----CceEEEEEcCCCCc-eEEee-----cC-CCceEEEEe-cCCc-E
Confidence 1 346789999999999998873200 12367777654443 22232 23 445566666 6666 5
Q ss_pred EEEeC----CCcEEEEEcccccccccccCCceeeeeecccC-CCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-CCeEEE
Q 040987 571 VSSSY----GGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-KKAMTAAAFSADGSVLAVAA-ETVITLWDPD-RNVLVA 643 (762)
Q Consensus 571 ~~~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-~~~~~~ 643 (762)
+..+. ++.|.+||+.++... .|... ...+ ...+..++|+ ++.++++.. |+..+||.+. +++...
T Consensus 285 ~~~s~~~~~~~~l~~~d~~~~~~~------~~~~l--~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 355 (695)
T 2bkl_A 285 YVLTDEGAPRQRVFEVDPAKPARA------SWKEI--VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR 355 (695)
T ss_dssp EEEECTTCTTCEEEEEBTTBCSGG------GCEEE--ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred EEEECCCCCCCEEEEEeCCCCCcc------CCeEE--ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence 54443 478999999776431 01111 1112 4567888888 677777777 8887777554 355566
Q ss_pred Eeccc-cCceeEEEEeCCCCEEEEEEcC--CCCeEEEEECCCCcee
Q 040987 644 VIGET-LTPIMNMSFVGSSEYLVATSWG--SKPQLSVWNMSKLSIS 686 (762)
Q Consensus 644 ~l~~~-~~~v~~~~~s~dg~~l~s~~~d--~~~~v~vwd~~~~~~~ 686 (762)
.+..+ ...+..++++||++.|+....+ ..+.|++||+.+++..
T Consensus 356 ~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 356 TVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp ECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 66554 5668889999999877744322 1124999999998753
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-11 Score=137.44 Aligned_cols=505 Identities=10% Similarity=0.052 Sum_probs=299.2
Q ss_pred ccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCcc----ceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 73 SYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKA----PVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~----~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
+.|.+ +...++|.+.+... +-+..||.++++... +..... .|.++...++| .+.+ ++. +.|..|
T Consensus 88 n~I~~-i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g-------~lwi-~t~-~gl~~~ 155 (795)
T 4a2l_A 88 DISRI-VKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPE-------QLLI-STP-EGLIMF 155 (795)
T ss_dssp SCEEE-EEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETT-------EEEE-EET-TEEEEE
T ss_pred cceeE-EEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCC-------CEEE-EEC-CceEEE
Confidence 45775 88888887666544 458999988776432 322111 28999999998 3444 333 568999
Q ss_pred eCCCcceEEEEEec--cc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcc
Q 040987 149 DFSVPELLKTIDVK--FS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225 (762)
Q Consensus 149 d~~~~~~~~~~~~~--~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~ 225 (762)
|..+++........ .. +.++.. ..++. + ..|+.++.|..|+..+++
T Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~i~~--------d~~g~----l-------------------wigt~~~Gl~~~~~~~~~ 204 (795)
T 4a2l_A 156 DIKESKFIDDSFSTAMHKTIASTLY--------RQGDQ----I-------------------YIGTSTDGLYTYSITQKT 204 (795)
T ss_dssp ETTTTEEECSSSCHHHHTCCEEEEE--------EETTE----E-------------------EEEESSSCEEEEETTTCC
T ss_pred ECCCCEEEeccCCCCCCcceEEEEE--------CCCCC----E-------------------EEEECCCCEEEEeCCCCe
Confidence 98776532211000 01 333321 00110 0 123445568888887766
Q ss_pred ccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-------cCcCeEEEEEcCCCcEEEE
Q 040987 226 LAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-------HTKKLTVLAFHPTQRIVAA 298 (762)
Q Consensus 226 ~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-------~~~~v~~~~~sp~~~~l~~ 298 (762)
............|.++...++|.+.+++.++.+..|+..+++.. ..... ....|.++...++|.+.+
T Consensus 205 ~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~-----~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi- 278 (795)
T 4a2l_A 205 FEKVIPILGTKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIK-----NYLHSPSNPKSISSNYIRSLAMDSQNRLWI- 278 (795)
T ss_dssp EEECC----CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEE-----EECCCTTCTTSCSCSBEEEEEECTTSCEEE-
T ss_pred EEEecCCCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEE-----EeecCCCCccccCCCeEEEEEEcCCCCEEE-
Confidence 54211122346788898888998888776667999998876542 22111 235699999998887544
Q ss_pred eecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEE
Q 040987 299 GDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378 (762)
Q Consensus 299 ~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~ 378 (762)
|+.+ .|.+|+..+++...... .. .....-....|.++...++|. |-.|+.++-|.
T Consensus 279 gt~~-Gl~~~~~~~~~~~~~~~-~~----------------------~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~ 333 (795)
T 4a2l_A 279 GTFN-DLNIYHEGTDSFASYSS-NP----------------------VENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLN 333 (795)
T ss_dssp EESS-CEEEEETTTTEEEEECC-CT----------------------TSTTSCSSSCEEEEEECTTSC-EEEEESSSCEE
T ss_pred EeCC-hhheEcCCCCeEEEEec-CC----------------------CCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeE
Confidence 4445 58899876553211000 00 000001235689999988886 44566667788
Q ss_pred EEecCCCceeccCC-------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 379 VWQLDTGKKKFLPR-------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 379 ~wd~~~~~~~~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++..++....... ....|.++...++|.+ .+|+.++.+..|+..+++..........+. .......|.+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~--~~l~~~~v~~ 410 (795)
T 4a2l_A 334 YYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFTSYTLQEDESA--RGIGSNNIKA 410 (795)
T ss_dssp EECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEEEECCC--------CCSCSCEEE
T ss_pred EeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEEEEecCCCCcc--cCCCCccEEE
Confidence 99877665432211 2346899998888764 456778789999988765443321110000 0001257889
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
++..++++.|.+|+.++-|..||..+++.. .+..... ......|.++...++|++.+.. . +.+
T Consensus 411 i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~-----~l~~~~v~~i~~d~~g~lwigt----------~-~Gl 473 (795)
T 4a2l_A 411 VYVDEKKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNS-----QLVNENVYAILPDGEGNLWLGT----------L-SAL 473 (795)
T ss_dssp EEEETTTTEEEEEETTTEEEEEETTTCCEE-EECTTTS-----CCSCSCEEEEEECSSSCEEEEE----------S-SCE
T ss_pred EEEcCCCCEEEEEeCcCceeEEeCCCCcEE-EeecCCC-----CcCCCeeEEEEECCCCCEEEEe----------c-Cce
Confidence 999999885666777667999998876422 2211000 0114568999998888866554 3 358
Q ss_pred EEEEecCCCceeEEEEEe-ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCC
Q 040987 532 KFWVSGTQNKEFTLSTIV-YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKA 610 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~-~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (762)
.+||..+++... +.... ..+.....|.++...++|++.+.. . +-+..||..++.. ..... . .........
T Consensus 474 ~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~-~~~~~-~----~~~~l~~~~ 544 (795)
T 4a2l_A 474 VRFNPEQRSFTT-IEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI-QKASI-L----PVSNVTKLF 544 (795)
T ss_dssp EEEETTTTEEEE-CCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE-EECCC-S----CSCGGGGSC
T ss_pred eEEeCCCCeEEE-ccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE-EEecC-C----CCCCCCCCe
Confidence 888877653221 11000 001113578999999998876654 4 4588899876554 11100 0 001123467
Q ss_pred eEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec--c-ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 611 MTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--E-TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 611 i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--~-~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|.++...++|++.+.... .+..||..+++....-. + ....|.++...++|.+.+++ ..| |..||..+++.
T Consensus 545 i~~i~~d~~g~lWigT~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G---l~~~~~~~~~~ 617 (795)
T 4a2l_A 545 TNCIYEASNGIIWVGTRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST-NRG---ISCFNPETEKF 617 (795)
T ss_dssp EEEEEECTTSCEEEEESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE-TTE---EEEEETTTTEE
T ss_pred eEEEEECCCCCEEEEeCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc-CCc---eEEEcCCCCcE
Confidence 899999999986654444 68899988776543221 1 13458889998888766655 455 88888876653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=5.9e-11 Score=135.09 Aligned_cols=515 Identities=9% Similarity=0.010 Sum_probs=307.6
Q ss_pred eEEEEecCCcceeeeecCcc----cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCc-cc-eeEEEEeCCCC
Q 040987 54 LCRTAEYPAVNSKMIRGGRS----YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHK-AP-VTTVIVVPAST 127 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~----~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~-~~-V~~v~~s~~~~ 127 (762)
-+..||..+.+...+..... .|.+ +...++|++.+... +.|..||.++++......++. .. |.++...+++
T Consensus 108 Gl~~yd~~~~~f~~~~~~~~~~~~~i~~-i~~d~~g~lwi~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g- 184 (795)
T 4a2l_A 108 GLSRYDEEKDIFQNFFYEKNGKHLQVNG-IEEISPEQLLISTP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGD- 184 (795)
T ss_dssp CEEEEETTTTEEEEECCEETTEECCCCE-EEEEETTEEEEEET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETT-
T ss_pred chheeCCCCCeEEeccccccCCCceEEE-EEECCCCCEEEEEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCC-
Confidence 36778877665554433221 1775 88888887766544 669999988776543222211 23 8899998888
Q ss_pred cccceeeeEEeeecCCeEEEEeCCCcceEEEEEe--ccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 128 PATKILSYCWTASLDGTIKYWDFSVPELLKTIDV--KFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 128 ~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
.+.+ ++.++.|..||..+++....... ...+.++.. ..+.. +
T Consensus 185 ------~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~----------------------d~~g~-l------ 228 (795)
T 4a2l_A 185 ------QIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQ----------------------QSPTR-I------ 228 (795)
T ss_dssp ------EEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEE----------------------EETTE-E------
T ss_pred ------CEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEE----------------------cCCCC-E------
Confidence 3333 55555689999887765432111 112333311 11100 0
Q ss_pred CCCCCCccccEEEEecCCccccceeee------ccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeee-
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTL------AEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITL- 278 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~- 278 (762)
..|+.++.+.+||..+++...-... -....|.++...++|.+.++..+ .|.+|+..++... ....
T Consensus 229 --wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~-----~~~~~ 300 (795)
T 4a2l_A 229 --WVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTFN-DLNIYHEGTDSFA-----SYSSN 300 (795)
T ss_dssp --EEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEESS-CEEEEETTTTEEE-----EECCC
T ss_pred --EEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeCC-hhheEcCCCCeEE-----EEecC
Confidence 2234455688888877654411111 12356899999999998877655 6899998776542 2211
Q ss_pred ------ccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 279 ------HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 279 ------~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
-....|.++...++|. |-.|+.++-|..|+........ .... .....+ .
T Consensus 301 ~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~---------------------~~~~~l--~ 355 (795)
T 4a2l_A 301 PVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKN-IRNI---------------------PYKNSL--S 355 (795)
T ss_dssp TTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEE-ECCC---------------------TTSSSC--S
T ss_pred CCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceE-EcCC---------------------CCCCCC--C
Confidence 1235799999999887 4456677779999865432110 0000 000000 2
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC---------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR---------IGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
...|.++...++|+ |..|+.++-|..|+..+++...... ....|.++...++|+.|.+|+.++.+..||.
T Consensus 356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~ 434 (795)
T 4a2l_A 356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR 434 (795)
T ss_dssp CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC
Confidence 34688898888876 4456677779999988876643321 1356889998888885777778788999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+++......... ......|.++...++|++.+. +.+| +..||..+++.. .+... ..+..-....|.+
T Consensus 435 ~~~~~~~~~~~~~------~l~~~~v~~i~~d~~g~lwig-t~~G-l~~~~~~~~~~~-~~~~~---~~~~~~~~~~i~~ 502 (795)
T 4a2l_A 435 NSGQVENFNQRNS------QLVNENVYAILPDGEGNLWLG-TLSA-LVRFNPEQRSFT-TIEKE---KDGTPVVSKQITT 502 (795)
T ss_dssp TTCCEEEECTTTS------CCSCSCEEEEEECSSSCEEEE-ESSC-EEEEETTTTEEE-ECCBC---TTCCBCCCCCEEE
T ss_pred CCCcEEEeecCCC------CcCCCeeEEEEECCCCCEEEE-ecCc-eeEEeCCCCeEE-Ecccc---ccccccCCceEEE
Confidence 8876543322110 011257888998888875554 4444 888998765321 11110 0000001356899
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE-eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI-VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
+...++|++.+.. . +.+..||..+... .+... ...+-....|.++...++|.+.+.. .. -+..|
T Consensus 503 i~~d~~g~lWigt----------~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~ 567 (795)
T 4a2l_A 503 LFRDSHKRLWIGG----------E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCF 567 (795)
T ss_dssp EEECTTCCEEEEE----------S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEE
T ss_pred EEECCCCCEEEEe----------C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeE
Confidence 9999999866654 3 3588888876643 21100 0001114578999999998866544 34 58889
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc----Cce--eEEE
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL----TPI--MNMS 656 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~----~~v--~~~~ 656 (762)
|..++....... ........|.++...++|++.+++ ++.|..|+.++++.. .+.... ..+ .++.
T Consensus 568 d~~~~~~~~~~~--------~~gl~~~~i~~i~~d~~g~lWi~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~ 637 (795)
T 4a2l_A 568 NEKDKQIKRYNT--------TNGLPNNVVYGILEDSFGRLWLST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYC 637 (795)
T ss_dssp ETTTTEEEEECG--------GGTCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEE
T ss_pred CCCCCcEEEeCC--------CCCCchhheEEEEECCCCCEEEEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCcee
Confidence 877654332110 001124568899999999876655 566888998877654 332221 122 4666
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
..++|+ |..++.+| +..++.+.
T Consensus 638 ~~~~G~-l~~g~~~G---l~~~~p~~ 659 (795)
T 4a2l_A 638 RTSVGQ-MYFGGING---ITTFRPEL 659 (795)
T ss_dssp ECTTSC-EEEEETTE---EEEECGGG
T ss_pred ECCCCe-EEEecCCc---eEEEcHHH
Confidence 777876 55667777 77777653
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-12 Score=128.54 Aligned_cols=283 Identities=11% Similarity=-0.013 Sum_probs=193.4
Q ss_pred cCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 280 HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 280 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
+...+.+++++++|+.+++...++.|.+||.. ++... .....+...+..+
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~-----------------------------~~~~~~~~~~~~i 62 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITE-----------------------------YPLPTPDAKVMCL 62 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEE-----------------------------EECSSTTCCEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEE-----------------------------ecCCcccCceeeE
Confidence 44678999999999977776667899999976 32111 1111234568899
Q ss_pred EEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 360 IFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 360 ~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
+++++|+.+++...++.|..||.. ++... .......+..+++.++|+++++...++.|.+||. +++.........
T Consensus 63 ~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~- 139 (299)
T 2z2n_A 63 TISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK- 139 (299)
T ss_dssp EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-
T ss_pred EECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-
Confidence 999999888777667899999986 44322 2234557899999999988777767889999998 554433221111
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
...+..++++++++.+++...++.|..||. +++.. .+..... ...+..++++++|++.++..
T Consensus 140 --------~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~--------~~~~~~i~~~~~g~l~v~~~ 201 (299)
T 2z2n_A 140 --------GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT-EFKIPTP--------ASGPVGITKGNDDALWFVEI 201 (299)
T ss_dssp --------TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSST--------TCCEEEEEECTTSSEEEEET
T ss_pred --------CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE-EeeCCCC--------CCcceeEEECCCCCEEEEcc
Confidence 146789999999988777767789999998 55432 2211110 34578999999998776664
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
..+.|.+||. +++.. .+. ...+ ...+.+++++++|+++++...++.|..||.. +... ..
T Consensus 202 ---------~~~~i~~~~~-~g~~~-~~~---~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~~~-~~---- 260 (299)
T 2z2n_A 202 ---------IGNKIGRITT-SGEIT-EFK---IPTP-NARPHAITAGAGIDLWFTEWGANKIGRLTSN-NIIE-EY---- 260 (299)
T ss_dssp ---------TTTEEEEECT-TCCEE-EEE---CSST-TCCEEEEEECSTTCEEEEETTTTEEEEEETT-TEEE-EE----
T ss_pred ---------CCceEEEECC-CCcEE-EEE---CCCC-CCCceeEEECCCCCEEEeccCCceEEEECCC-CceE-EE----
Confidence 5678999998 55422 221 1233 5678999999999877766567889999983 3321 11
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCe
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNV 640 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~ 640 (762)
....+...+.++++ ++|++.++...+.+..++.++++
T Consensus 261 -----~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 261 -----PIQIKSAEPHGICF-DGETIWFAMECDKIGKLTLIKDN 297 (299)
T ss_dssp -----ECSSSSCCEEEEEE-CSSCEEEEETTTEEEEEEEC---
T ss_pred -----eCCCCCCccceEEe-cCCCEEEEecCCcEEEEEcCccc
Confidence 01123467889999 99988777666778888877653
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-12 Score=131.35 Aligned_cols=284 Identities=9% Similarity=-0.071 Sum_probs=185.8
Q ss_pred EEcCCCcEEEEeec--CC---eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDV--TG---RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
...|+++++++... .. .|.++|..+++.. ..+.....+ .++++
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~------------------------------~~i~~g~~p--~i~~s 74 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL------------------------------GHVNGGFLP--NPVAA 74 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEE------------------------------EEecCCCCC--CeEEC
Confidence 34467777776643 22 7899998776533 223222222 89999
Q ss_pred cCCCEEEEEe----------cCCeEEEEecCCCceeccCCC--------CCCeEEEEeCCCCCeEEEEec--CCcEEEEE
Q 040987 363 SDGAYLYSGG----------KEGVLVVWQLDTGKKKFLPRI--------GSPLLYFTESPDPSLSSISCA--DNQVHLLK 422 (762)
Q Consensus 363 ~~g~~l~s~~----------~dg~i~~wd~~~~~~~~~~~~--------~~~v~~~~~s~~~~~l~~~~~--d~~i~i~d 422 (762)
|||++++.+. .++.|.+||..+.+....... ......++++|||++|+++.. ++.|.++|
T Consensus 75 pDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD 154 (373)
T 2mad_H 75 HSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV 154 (373)
T ss_pred CCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE
Confidence 9999999885 357899999998776432211 123457999999999999874 47899999
Q ss_pred cCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCC-CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCccee
Q 040987 423 MPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDG-GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500 (762)
Q Consensus 423 ~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (762)
.+++.+.. +... .++.+.|++ +.+++.+.||.+.++|. +++......... .. .. ....
T Consensus 155 -~t~~~~~~~i~~~--------------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~-~~-~~--~~p~ 214 (373)
T 2mad_H 155 -QGGSSDDQLLSSP--------------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGA-ML-TA--AQNL 214 (373)
T ss_pred -CCCCEEeEEcCCC--------------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccc-cc-cC--Ccce
Confidence 99988777 5431 124455655 34566678899999999 776553321100 00 00 0111
Q ss_pred EEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee-------cCCCCCceEEEEEcCCCCeEEEE
Q 040987 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY-------EPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 501 v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~-------~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.....+.+++..++..+ ..+.+.+.|+.+..... +..... .+........++++||++.++.+
T Consensus 215 ~~~~~~~~~~~~~~~~~---------~~~~v~vid~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~ 284 (373)
T 2mad_H 215 LTQPAQANKSGRIVWPV---------YSGKILQADISAAGATN-KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL 284 (373)
T ss_pred eecceeEecCCEEEEEc---------CCceEEEEeccCCcceE-eeeeeecCCcccccceecCceEeEEECCCCCEEEEE
Confidence 23456777766655554 45688888887553221 111100 00002234457899999888776
Q ss_pred eC----------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc-EEEEEc--CCeEEEEeCCCCe
Q 040987 574 SY----------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS-VLAVAA--ETVITLWDPDRNV 640 (762)
Q Consensus 574 ~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~-~la~~~--d~~i~iwd~~~~~ 640 (762)
.. ++.|.++|..+.+....++ -.....+++|+|||+ +++++. ++.|.++|+.+++
T Consensus 285 ~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~------------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 285 TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred eccCCcccccCCCCeEEEEECCCCEEEEEEE------------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC
Confidence 53 3579999999888766653 234578999999999 677665 7999999999999
Q ss_pred EEEEe
Q 040987 641 LVAVI 645 (762)
Q Consensus 641 ~~~~l 645 (762)
.+..+
T Consensus 353 vv~~i 357 (373)
T 2mad_H 353 QDQST 357 (373)
T ss_pred EEeee
Confidence 98873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=133.60 Aligned_cols=242 Identities=11% Similarity=0.049 Sum_probs=180.6
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
.++.|++++.++.|.+||.++++.+..+..+.. ..+.++.++|+|++++ +.++.|+.||. +++.+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~---------~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKG---------WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTT---------CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCcc---------CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 457888899999999999999999999876431 2467899999999888 45678999999 78887776
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc-eeEEEEEEecCCCceeEEEEEee-cCCCCCceEEEE
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS-LVCLKFWVSGTQNKEFTLSTIVY-EPHRDAGISAVA 562 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~-d~~i~iwd~~~~~~~~~~~~~~~-~~h~~~~v~~~~ 562 (762)
.... ...+.++.+.++|+++++.+ . ++.+..+|. +++.+..+..... ..+ ......++
T Consensus 72 ~~~~---------~~~~~~~~~~~dG~~lv~~~---------~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~-~~~~~~v~ 131 (276)
T 3no2_A 72 AAPA---------GCEMQTARILPDGNALVAWC---------GHPSTILEVNM-KGEVLSKTEFETGIERP-HAQFRQIN 131 (276)
T ss_dssp ECCT---------TCEEEEEEECTTSCEEEEEE---------STTEEEEEECT-TSCEEEEEEECCSCSSG-GGSCSCCE
T ss_pred cCCC---------CccccccEECCCCCEEEEec---------CCCCEEEEEeC-CCCEEEEEeccCCCCcc-cccccCce
Confidence 6421 24578899999999999887 4 677777775 5555555432100 111 22455677
Q ss_pred EcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 563 FHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 563 ~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
+.++|+++++...++.|..||.. ++.+..+. ....+.++.+.++|++++++. ++.|..+|.++|+.
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~------------~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVK------------LSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEE------------CSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEE------------CCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence 89999999999999999999998 76655442 123455678889999998887 77999999999999
Q ss_pred EEEecccc------CceeEEEEeCCCCEEEEEEcC--------CCCeEEEEEC-CCCceeeEEEEee
Q 040987 642 VAVIGETL------TPIMNMSFVGSSEYLVATSWG--------SKPQLSVWNM-SKLSISWSYLLHV 693 (762)
Q Consensus 642 ~~~l~~~~------~~v~~~~~s~dg~~l~s~~~d--------~~~~v~vwd~-~~~~~~~~~~~~~ 693 (762)
+..+..+. ..+..+...++|..+++.+.. +. .+++.+ .+|+++|+|....
T Consensus 199 ~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~--~~~~~~~~~g~~~W~~~~~~ 263 (276)
T 3no2_A 199 VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKH--PQLVEIDSEGKVVWQLNDKV 263 (276)
T ss_dssp EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCC--CSEEEECTTSBEEEEECCTT
T ss_pred EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCC--ceEEEECCCCCEEEEecCcc
Confidence 88886432 127888899999988887522 12 456666 6889999876554
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-13 Score=139.03 Aligned_cols=291 Identities=12% Similarity=0.007 Sum_probs=189.0
Q ss_pred cCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCce
Q 040987 363 SDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSME 427 (762)
Q Consensus 363 ~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~ 427 (762)
+++++++..... +.|.++|..+++.+.....+..- .++++|||++++++. .++.|.++|..+++
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~ 160 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL 160 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence 466766666542 69999999999886544433334 899999999998886 36789999999999
Q ss_pred EEEEEccC-CCCCCCCCcccCceeeEEEeCCCCEEEEeec--CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 428 IIRSISGI-KLPCPLPEEYKGLCRDIAFNHDGGLVALRAE--NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 428 ~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+..+.-. .... ........++++|||++++++.. ++.|.++|+.+.+.+.++.... . .
T Consensus 161 vv~~I~v~g~~r~----~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g-----------~---~ 222 (426)
T 3c75_H 161 PIADIELPDAPRF----LVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD-----------C---Y 222 (426)
T ss_dssp EEEEEEETTCCCC----CBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----------E---E
T ss_pred EEEEEECCCcccc----ccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC-----------c---e
Confidence 98887532 0000 00023467899999999998864 5789999999998877765421 0 1
Q ss_pred EEecCC-CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc-eEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 505 ALSQDG-SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG-ISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 505 ~~sp~g-~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~-v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
...|++ +.+++.+ .|+.+.+.+..+++...... ..+... ... ...+.+++++..++..+..+.+.+.
T Consensus 223 ~~~p~g~~~~v~~~---------~dG~~~~V~~~~~~v~~~~~-~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~Vi 291 (426)
T 3c75_H 223 HIFPASPTVFYMNC---------RDGSLARVDFADGETKVTNT-EVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQA 291 (426)
T ss_dssp EEEEEETTEEEEEE---------TTSSEEEEECCTTCCEEEEC-CCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEE
T ss_pred eeccCCCcEEEEEc---------CCCCEEEEECCCCcEEEEee-eeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEE
Confidence 223332 2223333 44555555553333221110 001111 111 1235789999888888888999999
Q ss_pred EcccccccccccCCceeeee----ecccCCCCeEEEEEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEecc
Q 040987 583 ICNDELQQKDLQSSGWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGE 647 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~ 647 (762)
|..+....... .|.... ...........++++||++.+.+.. ++.|.++|..+++.+..+..
T Consensus 292 D~~~~~~~v~~---~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 292 DLTAEGATFRA---PIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EECSSCEEECC---CEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred eccCCceEEee---eeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 98654422111 111000 0000011222478999998777653 24799999999999998864
Q ss_pred ccCceeEEEEeCCCC-EEEEEEc-CCCCeEEEEECCCCceeeEE
Q 040987 648 TLTPIMNMSFVGSSE-YLVATSW-GSKPQLSVWNMSKLSISWSY 689 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~-~l~s~~~-d~~~~v~vwd~~~~~~~~~~ 689 (762)
. ....+++|+|||+ +|+++.. ++. |.++|+.+++.+.++
T Consensus 369 g-~~P~gia~spDg~~~lyv~n~~s~~--VsVID~~t~kvv~tI 409 (426)
T 3c75_H 369 G-HEIDSINVSQDAEPLLYALSAGTQT--LHIYDAATGEELRSV 409 (426)
T ss_dssp E-EEECEEEECCSSSCEEEEEETTTTE--EEEEETTTCCEEEEE
T ss_pred C-CCcCeEEEccCCCEEEEEEcCCCCe--EEEEECCCCCEEEEe
Confidence 3 2478999999999 8888884 666 999999999998766
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-13 Score=155.50 Aligned_cols=285 Identities=10% Similarity=0.007 Sum_probs=179.5
Q ss_pred ecCCCEEEEEecCC-----eEEEEecC---CCceecc------C-CCCCCeEEEEeCCCCCeEEEEecC-----CcEEEE
Q 040987 362 SSDGAYLYSGGKEG-----VLVVWQLD---TGKKKFL------P-RIGSPLLYFTESPDPSLSSISCAD-----NQVHLL 421 (762)
Q Consensus 362 s~~g~~l~s~~~dg-----~i~~wd~~---~~~~~~~------~-~~~~~v~~~~~s~~~~~l~~~~~d-----~~i~i~ 421 (762)
+|+|++++....++ .+++.+.. .++...+ . .+...+..++|||||++|+.+..+ ..|++|
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~ 194 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV 194 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 48999888766543 34444544 4443322 1 112257789999999999887654 359999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--------------eEEEEEcCCCCceeeEEee
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY--------------CIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~i~d~~~~~~~~~~~~~ 487 (762)
|+.+++.+..... . ..+..++|+|| +.|+.++.++ .|++|++.++.....+...
T Consensus 195 dl~tg~~~~~~~~-~----------~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 195 GVADGKPLADELK-W----------VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp ETTTCCEEEEEEE-E----------EESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred ECCCCCCCCccCC-C----------ceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 9999887654211 1 22357899999 9998887654 3889998776543222222
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC--CceeEEEEEeecCCCCCceEEEEEcC
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ--NKEFTLSTIVYEPHRDAGISAVAFHP 565 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~--~~~~~~~~~~~~~h~~~~v~~~~~sp 565 (762)
...+ ...+..+.|||||++|+....+ +......|++||+.++ .....+ ..+ ...+... ++|
T Consensus 263 ~~~~------~~~~~~~~~SpDG~~l~~~~~~----~~~~~~~l~~~d~~~~~~~~~~~l-----~~~-~~~~~~~-~~~ 325 (741)
T 1yr2_A 263 TPEL------PKRGHGASVSSDGRWVVITSSE----GTDPVNTVHVARVTNGKIGPVTAL-----IPD-LKAQWDF-VDG 325 (741)
T ss_dssp CTTC------TTCEEEEEECTTSCEEEEEEEC----TTCSCCEEEEEEEETTEECCCEEE-----ECS-SSSCEEE-EEE
T ss_pred cCCC------CeEEEEEEECCCCCEEEEEEEc----cCCCcceEEEEECCCCCCcccEEe-----cCC-CCceEEE-Eec
Confidence 1111 2347889999999999888732 1002458999999876 312233 233 3344444 348
Q ss_pred CCCeEEEEeCC----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-CC
Q 040987 566 NRRAAVSSSYG----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD-RN 639 (762)
Q Consensus 566 d~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-~~ 639 (762)
+|+.|+..+.+ +.|.+||+.++. . .|.. ....+...+..++|+ ++.++++.. |+..+||.++ ++
T Consensus 326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~------~~~~--l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g 395 (741)
T 1yr2_A 326 VGDQLWFVSGDGAPLKKIVRVDLSGST-P------RFDT--VVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG 395 (741)
T ss_dssp ETTEEEEEECTTCTTCEEEEEECSSSS-C------EEEE--EECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS
T ss_pred cCCEEEEEECCCCCCCEEEEEeCCCCc-c------ccEE--EecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC
Confidence 99988888764 459999987642 0 1111 112334456678887 566677766 8876666443 45
Q ss_pred eEEEEecc-ccCceeEEEEeCCCCEEEEEEc--CCCCeEEEEECCCCce
Q 040987 640 VLVAVIGE-TLTPIMNMSFVGSSEYLVATSW--GSKPQLSVWNMSKLSI 685 (762)
Q Consensus 640 ~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~--d~~~~v~vwd~~~~~~ 685 (762)
+....+.. +...+..+.++||++.|+.... ...+.|++||+.+++.
T Consensus 396 ~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 396 KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 55666654 3566889999999887664422 2223499999998874
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-13 Score=133.25 Aligned_cols=241 Identities=8% Similarity=-0.078 Sum_probs=164.9
Q ss_pred CeEEEEeCCCCCeEE-EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 396 PLLYFTESPDPSLSS-ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
...+++++++|++++ +...++.|.+|+..+........... ..+.+++++++++++++.. ++.|..||
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~----------~~p~~i~~~~~g~l~v~~~-~~~i~~~d 93 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL----------YQPQGLAVDGAGTVYVTDF-NNRVVTLA 93 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC----------CSCCCEEECTTCCEEEEET-TTEEEEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc----------CCcceeEECCCCCEEEEcC-CCEEEEEe
Confidence 678899999998666 43667899999876544322111111 3567899999998666655 88999999
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
....... .+.. .. ...+..++++++|+++++.. .++.|.+|+..+....... ...
T Consensus 94 ~~~~~~~-~~~~--~~-------~~~p~~i~~~~~g~l~v~~~---------~~~~i~~~~~~~~~~~~~~-----~~~- 148 (270)
T 1rwi_B 94 AGSNNQT-VLPF--DG-------LNYPEGLAVDTQGAVYVADR---------GNNRVVKLAAGSKTQTVLP-----FTG- 148 (270)
T ss_dssp TTCSCCE-ECCC--CS-------CSSEEEEEECTTCCEEEEEG---------GGTEEEEECTTCCSCEECC-----CCS-
T ss_pred CCCceEe-eeec--CC-------cCCCcceEECCCCCEEEEEC---------CCCEEEEEECCCceeEeec-----ccc-
Confidence 8765322 1111 00 24578999999998777665 5678999975544332111 122
Q ss_pred CCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 555 DAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
...+.+++++|+|+++++...++.|.+||..+....... ..+...+.+++++++|.++++.. ++.|.+
T Consensus 149 ~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-----------~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~ 217 (270)
T 1rwi_B 149 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-----------FTDITAPWGIAVDEAGTVYVTEHNTNQVVK 217 (270)
T ss_dssp CCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-----------CSSCCSEEEEEECTTCCEEEEETTTSCEEE
T ss_pred CCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-----------ccCCCCceEEEECCCCCEEEEECCCCcEEE
Confidence 346778999999997777777789999998765433221 11235678999999997777766 889999
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
|+..+.........+...+.+++++++|+++++...++. |+++++...+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~--v~~~~~~~~~~ 267 (270)
T 1rwi_B 218 LLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR--VVKLTSLEHHH 267 (270)
T ss_dssp ECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTE--EEEECCCGGGS
T ss_pred EcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCE--EEEEcCCCccc
Confidence 999876544333233456899999999998888777877 99999876543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-13 Score=131.39 Aligned_cols=241 Identities=11% Similarity=-0.011 Sum_probs=166.6
Q ss_pred CeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 283 KLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
...+++++++|+.++ +...++.|.+|+..+..... ....+...+.++++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~------------------------------~~~~~~~~p~~i~~ 74 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV------------------------------LPFNGLYQPQGLAV 74 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE------------------------------CCCCSCCSCCCEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce------------------------------EeeCCcCCcceeEE
Confidence 678999999999766 54678899999875432111 01122345778999
Q ss_pred ecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC
Q 040987 362 SSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440 (762)
Q Consensus 362 s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 440 (762)
+++|+.+++.. ++.|.+||..+....... .....+..++++++|+++++...++.|.+|+..+...........
T Consensus 75 ~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---- 149 (270)
T 1rwi_B 75 DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL---- 149 (270)
T ss_dssp CTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSC----
T ss_pred CCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccC----
Confidence 99998666555 889999998876554333 223568899999999877776678899999766543332211111
Q ss_pred CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 441 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
..+..++++++++++++...++.|.+||.......... .. . ...+..++++++|.++++..
T Consensus 150 ------~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~---~~-~------~~~p~~i~~d~~g~l~v~~~--- 210 (270)
T 1rwi_B 150 ------NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP---FT-D------ITAPWGIAVDEAGTVYVTEH--- 210 (270)
T ss_dssp ------CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC---CS-S------CCSEEEEEECTTCCEEEEET---
T ss_pred ------CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec---cc-C------CCCceEEEECCCCCEEEEEC---
Confidence 35678999999997777777789999998765432211 00 0 24578999999997666664
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
.++.|.+|+..+..... . ...+ ...+.+++++|+|+++++...++.|+++++...+.
T Consensus 211 ------~~~~v~~~~~~~~~~~~-~----~~~~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 211 ------NTNQVVKLLAGSTTSTV-L----PFTG-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp ------TTSCEEEECTTCSCCEE-C----CCCS-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ------CCCcEEEEcCCCCccee-e----ccCC-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 56789999987654322 1 1122 35689999999999888888899999999876553
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-12 Score=126.98 Aligned_cols=193 Identities=11% Similarity=0.009 Sum_probs=137.4
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCce
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRT 315 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~ 315 (762)
.+.+++++|+|++++ +.++.|..||. +++.. .++.......+.++.+.+||+++++.+. ++.|..++..+ +.
T Consensus 38 ~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~----W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G-k~ 110 (276)
T 3no2_A 38 ECNSVAATKAGEILF-SYSKGAKMITR-DGREL----WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG-EV 110 (276)
T ss_dssp CCCEEEECTTSCEEE-ECBSEEEEECT-TSCEE----EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS-CE
T ss_pred CCcCeEECCCCCEEE-eCCCCEEEECC-CCCEE----EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCC-CE
Confidence 467889999999988 56788999998 66643 2333233357889999999999998877 77888888643 32
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS 395 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~ 395 (762)
+..... -.....+......+++.++|+++++...++.|..||.+ |+.+.......
T Consensus 111 l~~~~~------------------------~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~ 165 (276)
T 3no2_A 111 LSKTEF------------------------ETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG 165 (276)
T ss_dssp EEEEEE------------------------CCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS
T ss_pred EEEEec------------------------cCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC
Confidence 221100 00001122234556788999999999999999999998 88765444445
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
....+...++|+.++++..++.|..+|..+|+.+..+.....+. ..-..+..++..++|+.+++.+
T Consensus 166 ~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~l~~~~~~~~~~~G~i~v~~~ 231 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEG----VQLFFVAQLFPLQNGGLYICNW 231 (276)
T ss_dssp CCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBS----CCCSEEEEEEECTTSCEEEEEE
T ss_pred CccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCC----ccccccccceEcCCCCEEEEec
Confidence 56677888999999988888899999999999999986433110 0013467888899999888764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-12 Score=133.72 Aligned_cols=282 Identities=13% Similarity=0.082 Sum_probs=187.4
Q ss_pred cCCCEEEEEeC------CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee----------cCCeEE
Q 040987 83 NDVKRLLVCTS------NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS----------LDGTIK 146 (762)
Q Consensus 83 ~dg~~la~~~~------~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s----------~d~~i~ 146 (762)
+|++++.+... +.|.++|.++++.+.++.--..+ .++++||| ++|+.+. .++.|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDg-------k~lyVan~~~~~~~~G~~~~~Vs 152 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDG-------SFFAQASTVFERIARGKRTDYVE 152 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTS-------SCEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCC-------CEEEEEeccccccccCCCCCEEE
Confidence 67777776663 69999999999999999754455 89999999 4444443 467899
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
++|..+++.+.++....+-
T Consensus 153 viD~~t~~vv~~I~v~g~~------------------------------------------------------------- 171 (426)
T 3c75_H 153 VFDPVTFLPIADIELPDAP------------------------------------------------------------- 171 (426)
T ss_dssp EECTTTCCEEEEEEETTCC-------------------------------------------------------------
T ss_pred EEECCCCcEEEEEECCCcc-------------------------------------------------------------
Confidence 9999998888776532000
Q ss_pred cceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC-cEEEEeecC
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ-RIVAAGDVT 302 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d 302 (762)
..........++|+|||++|.++. ++.|.+.|+.+.+.. ..+..+. +....|++ +.+++.+.|
T Consensus 172 ----r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv----~~I~v~g-----~~~~~p~g~~~~v~~~~d 238 (426)
T 3c75_H 172 ----RFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFD----RMLDVPD-----CYHIFPASPTVFYMNCRD 238 (426)
T ss_dssp ----CCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEE----EEEECCS-----EEEEEEEETTEEEEEETT
T ss_pred ----ccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEE----EEEEcCC-----ceeeccCCCcEEEEEcCC
Confidence 000012345679999999998653 578999999998754 1222111 12333433 344555667
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc-eeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE-VSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
|.+.+.+..+++...... ..+.-...+ ...+.+.+++..++.....+.+.+.|
T Consensus 239 G~~~~V~~~~~~v~~~~~--------------------------~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD 292 (426)
T 3c75_H 239 GSLARVDFADGETKVTNT--------------------------EVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD 292 (426)
T ss_dssp SSEEEEECCTTCCEEEEC--------------------------CCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred CCEEEEECCCCcEEEEee--------------------------eeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence 777777764433221000 000001111 12356788888888778889999999
Q ss_pred cCCCceeccCC-------------CCCCeEEEEeCCCCCeEEEEec----------CCcEEEEEcCCceEEEEEccCCCC
Q 040987 382 LDTGKKKFLPR-------------IGSPLLYFTESPDPSLSSISCA----------DNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 382 ~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
........... .......++++|+++++++... .+.|.++|..+.+.+.++...
T Consensus 293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--- 369 (426)
T 3c75_H 293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--- 369 (426)
T ss_dssp ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---
T ss_pred ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC---
Confidence 87654321110 1112223688999998887643 357999999999999988643
Q ss_pred CCCCCcccCceeeEEEeCCCC-EEEEee-cCceEEEEEcCCCCceeeE
Q 040987 439 CPLPEEYKGLCRDIAFNHDGG-LVALRA-ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~i~d~~~~~~~~~~ 484 (762)
.....++|+||++ ++++.. .++.|.++|+.+.+.+.++
T Consensus 370 --------~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 370 --------HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp --------EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred --------CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 2468999999999 787777 5899999999999887775
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-12 Score=126.40 Aligned_cols=248 Identities=12% Similarity=0.078 Sum_probs=167.3
Q ss_pred eccccceeEEEEecCCCEEEE-------EecCCeEEEEecCCCceeccCC-----CCCCeEEEEeCCC-CCeEEEEecCC
Q 040987 350 HWHPSEVSVLIFSSDGAYLYS-------GGKEGVLVVWQLDTGKKKFLPR-----IGSPLLYFTESPD-PSLSSISCADN 416 (762)
Q Consensus 350 ~~h~~~v~~~~~s~~g~~l~s-------~~~dg~i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~~-~~~l~~~~~d~ 416 (762)
...-....+++|+++|+.+++ ...++.|.+||..+++...+.. +...+..++++++ |++++ ++..+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v-~~~~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFV-ADMRL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEE-EETTT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEE-EECCC
Confidence 334445688999999987777 5677899999988887654332 4467889999999 66554 44555
Q ss_pred cEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------------ceEEEEEcCCCCc
Q 040987 417 QVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------------YCIHFYSLLDDRG 480 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------------g~i~i~d~~~~~~ 480 (762)
.|.+||.. ++.... ...... .....+.+++++++|+++++...+ +.|..|+.. ++.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~~------~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSEG------RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTTS------CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CEEEEeCC-CCEEEEEeccCCC------ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 89999998 665433 221110 011357899999999887776654 567777765 332
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEe----cCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEEE-EeecCCC
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALS----QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLST-IVYEPHR 554 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~s----p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~~-~~~~~h~ 554 (762)
..+... ......++++ |+++.+.++.. .++.|.+|+.. ++... .... ..+.++
T Consensus 165 -~~~~~~----------~~~~~~i~~~~~~d~dg~~l~v~~~--------~~~~i~~~~~~~~g~~~-~~~~~~~~~~~- 223 (314)
T 1pjx_A 165 -IQVDTA----------FQFPNGIAVRHMNDGRPYQLIVAET--------PTKKLWSYDIKGPAKIE-NKKVWGHIPGT- 223 (314)
T ss_dssp -EEEEEE----------ESSEEEEEEEECTTSCEEEEEEEET--------TTTEEEEEEEEETTEEE-EEEEEEECCCC-
T ss_pred -EEeccC----------CCCcceEEEecccCCCCCEEEEEEC--------CCCeEEEEECCCCCccc-cceEEEECCCC-
Confidence 222111 2236788999 99977666542 56789999987 33211 1111 112233
Q ss_pred C-CceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeE
Q 040987 555 D-AGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVI 631 (762)
Q Consensus 555 ~-~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i 631 (762)
. .....++++++|+++++...++.|.+||..+++..... ..+...+.+++|+|+|+.|.+++ ++.|
T Consensus 224 ~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-----------~~~~~~~~~i~~~~dg~~l~v~~~~~~~l 292 (314)
T 1pjx_A 224 HEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-----------RCPFEKPSNLHFKPQTKTIFVTEHENNAV 292 (314)
T ss_dssp SSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-----------ECSSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-----------eCCCCCceeEEECCCCCEEEEEeCCCCeE
Confidence 3 56788999999998888878889999998866544332 12346789999999999666554 6799
Q ss_pred EEEeCCC
Q 040987 632 TLWDPDR 638 (762)
Q Consensus 632 ~iwd~~~ 638 (762)
..|++..
T Consensus 293 ~~~~~~~ 299 (314)
T 1pjx_A 293 WKFEWQR 299 (314)
T ss_dssp EEEECSS
T ss_pred EEEeCCC
Confidence 9999875
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-11 Score=121.58 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=190.7
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
....+.++++.++|+..++...++.|.+||.. ++... .......+..+++.++|+++++...++.|..||.. ++..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~ 95 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT 95 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE
Confidence 34567899999999887777678999999988 65533 22334678999999999877776667889999988 5543
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
.+.... ....+..++++++++++++...++.|..+|.. ++.. .+..... ...+..++++++
T Consensus 96 -~~~~~~--------~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~--------~~~~~~i~~d~~ 156 (300)
T 2qc5_A 96 -EYPLPQ--------PDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNK--------GSYPAFITLGSD 156 (300)
T ss_dssp -EEECSS--------TTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSST--------TCCEEEEEECTT
T ss_pred -EecCCC--------CCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCC--------CCCceeEEECCC
Confidence 222111 01467899999999888777667889999986 4332 2221111 345789999999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
|++.++.. ..+.|..|+. +++.. .+. ...+ ...+..++++++|+++++....+.|.+||. ++..
T Consensus 157 g~l~v~~~---------~~~~i~~~~~-~g~~~-~~~---~~~~-~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 157 NALWFTEN---------QNNSIGRITN-TGKLE-EYP---LPTN-AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp SSEEEEET---------TTTEEEEECT-TCCEE-EEE---CSST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred CCEEEEec---------CCCeEEEECC-CCcEE-Eee---CCCC-CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 99666654 4678999987 44322 121 1233 457889999999987777666778999998 3332
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEE
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~ 667 (762)
.... .......+.+++++++|++.++.. ++.|..||.. ++... .+......+.+++++++|++.++.
T Consensus 221 ~~~~----------~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 221 SEYD----------IPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQEYQLQTENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EEEE----------CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECCSTTCCCCCEEECTTSCEEEEC
T ss_pred EEEE----------CCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEEEEECCccCCccceeEeCCCCCEEEEc
Confidence 2111 112346788999999999766665 7999999984 54332 233334568899999999866655
Q ss_pred EcCCCCeEEEEECC
Q 040987 668 SWGSKPQLSVWNMS 681 (762)
Q Consensus 668 ~~d~~~~v~vwd~~ 681 (762)
. . . |..+|.+
T Consensus 290 ~-~-~--i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-K--IGKLNLN 299 (300)
T ss_dssp S-S-E--EEEEEEC
T ss_pred c-C-c--eEEeCCC
Confidence 4 3 3 7777753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.1e-11 Score=120.07 Aligned_cols=278 Identities=13% Similarity=-0.004 Sum_probs=186.6
Q ss_pred cCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEe-eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 70 GGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 70 ~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~-~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
.....+.+ ++++++|++.++.. ++.|.+||.. ++... .+..+...+.++++.+++ .++++...++.|..
T Consensus 17 ~~~~~p~~-i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~v~~ 87 (300)
T 2qc5_A 17 IPDSGPYG-ITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG-------DIWFTENGANKIGK 87 (300)
T ss_dssp STTCCEEE-EEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-------CEEEEETTTTEEEE
T ss_pred CCCCCcce-eeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC-------CEEEEecCCCeEEE
Confidence 33445565 99999999888775 5999999987 65443 233445679999999999 55566666788999
Q ss_pred EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccc
Q 040987 148 WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLA 227 (762)
Q Consensus 148 Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~ 227 (762)
||.. ++.. .+..
T Consensus 88 ~d~~-g~~~-~~~~------------------------------------------------------------------ 99 (300)
T 2qc5_A 88 LSKK-GGFT-EYPL------------------------------------------------------------------ 99 (300)
T ss_dssp ECTT-SCEE-EEEC------------------------------------------------------------------
T ss_pred ECCC-CCeE-EecC------------------------------------------------------------------
Confidence 9977 5432 1110
Q ss_pred ceeeeccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEE
Q 040987 228 GGVTLAEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306 (762)
Q Consensus 228 ~~~~~~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 306 (762)
......+..+++.++|+++++.. ++.|..++.. ++.. ..........+.++++.++++..++...++.|.
T Consensus 100 ----~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~----~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~ 170 (300)
T 2qc5_A 100 ----PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY----EYDLPNKGSYPAFITLGSDNALWFTENQNNSIG 170 (300)
T ss_dssp ----SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE----EEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred ----CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE----EccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence 00123467889999999887664 7889999887 4432 111222456789999999999666665678899
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
.++. .++... .....+...+..+++.++|+..++....+.|.+||. +++
T Consensus 171 ~~~~-~g~~~~-----------------------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~ 219 (300)
T 2qc5_A 171 RITN-TGKLEE-----------------------------YPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE 219 (300)
T ss_dssp EECT-TCCEEE-----------------------------EECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC
T ss_pred EECC-CCcEEE-----------------------------eeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc
Confidence 9987 332111 111123346788999999987776666778999998 455
Q ss_pred eec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 387 KKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 387 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
... .......+.+++++++|++.++...++.|..|+.. ++.. .+.... ....+.+++++++|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~--------~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 220 ISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NTIQ-EYQLQT--------ENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECCS--------TTCCCCCEEECTTSCEEEEC
T ss_pred EEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-CcEE-EEECCc--------cCCccceeEeCCCCCEEEEc
Confidence 432 23345678899999999866665557899999984 4433 222111 01457889999999866655
Q ss_pred ecCceEEEEEcC
Q 040987 465 AENYCIHFYSLL 476 (762)
Q Consensus 465 ~~dg~i~i~d~~ 476 (762)
. . .|..+|..
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 4 4 67777653
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=147.71 Aligned_cols=245 Identities=11% Similarity=-0.001 Sum_probs=159.5
Q ss_pred CceEEEECCCCCEEEEEeC------CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCe------
Q 040987 237 EPQVITISSSGKYFGIRKQ------RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGR------ 304 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~------~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~------ 304 (762)
.+..++|||||++||.+.+ ..|++||+.+++.. .. ..+...+..++|+|| +.|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-----~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-----AD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAF 236 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-----EE-EEEEEESCCCEESTT-SEEEEEECCCC------
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-----Cc-cCCCceeccEEEECC-CEEEEEEecCccccccc
Confidence 4678899999999985522 36999999998853 11 112222357899999 98888876553
Q ss_pred --------EEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC-
Q 040987 305 --------ILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG- 375 (762)
Q Consensus 305 --------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg- 375 (762)
|++|++.+++.-. ..+.....+...+..+.|+|||++|+..+.++
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~--------------------------~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSAD--------------------------QPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGC--------------------------EEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccCCCCCEEEEEECCCCchhC--------------------------EEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 8888875543100 01111222333578899999999988877543
Q ss_pred ----eEEEEecCCC--c-eeccCCCCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCc--eEEEEEccCCCCCCCC
Q 040987 376 ----VLVVWQLDTG--K-KKFLPRIGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSM--EIIRSISGIKLPCPLP 442 (762)
Q Consensus 376 ----~i~~wd~~~~--~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~--~~~~~~~~~~~~~~~~ 442 (762)
.|++||+.++ + ...+........... +|+|+.|+..+.+ +.|.+||+.++ +....+..+.
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~------ 363 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK------ 363 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS------
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC------
Confidence 8999999887 5 444444444444443 4899988887764 45999999874 3333333322
Q ss_pred CcccCceeeEEEeCCCCEEEEeecCceEEEEEcC-CCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL-DDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
..+..+.++ ++.++++...++..++|.+. +++....+... . ...+..+.++|+++.++.....
T Consensus 364 ----~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~---~------~~~v~~~~~s~d~~~l~~~~ss-- 427 (741)
T 1yr2_A 364 ----DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLP---G------IGSASGLSGRPGDRHAYLSFSS-- 427 (741)
T ss_dssp ----SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCS---S------SCEEEEEECCBTCSCEEEEEEE--
T ss_pred ----CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCC---C------CeEEEEeecCCCCCEEEEEEcC--
Confidence 456677777 56677788888877776554 33333322210 0 4568889999999877654311
Q ss_pred ccCCCceeEEEEEEecCCC
Q 040987 522 EEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~ 540 (762)
....++|++||+.+++
T Consensus 428 ---~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 428 ---FTQPATVLALDPATAK 443 (741)
T ss_dssp ---TTEEEEEEEEETTTTE
T ss_pred ---CCCCCEEEEEECCCCc
Confidence 0145789999998775
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.7e-09 Score=119.97 Aligned_cols=501 Identities=8% Similarity=0.002 Sum_probs=286.9
Q ss_pred ecCCCeEEEEecCCcceeeeecC--------cccccCCceeec--CCCEEEEEeCCEEEEEEcccceEEeeec-----CC
Q 040987 49 ARSSGLCRTAEYPAVNSKMIRGG--------RSYVSSPPAFSN--DVKRLLVCTSNTVSIFSTSTGLQISSLE-----GH 113 (762)
Q Consensus 49 ~~~~g~i~~~~~~~~~~~~~~~h--------~~~v~~~~~~s~--dg~~la~~~~~~i~iwd~~~~~~~~~l~-----~h 113 (762)
|..++-+..||..+.+...+... ...|.+ +.... +|++.+...++-|..||.++++...... -.
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~-i~~d~~~~g~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~ 161 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTH-ITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALP 161 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEE-EEECSSTTSEEEEEESSSCEEEEETTTTEEEEESTTTCTTCS
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceE-EEecCccCCCEEEEECCCCeeEEECCCCeEEeeccCcccCCC
Confidence 44554677888877665544211 124655 66666 6765554336678999988776543211 12
Q ss_pred ccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEe
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSV 193 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (762)
...|.++...+++ .+. .++.++-|..||..+++... +.....
T Consensus 162 ~~~i~~i~~d~~g-------~lw-igt~~~Gl~~~~~~~~~~~~-~~~~~~----------------------------- 203 (781)
T 3v9f_A 162 SEQTWTATEAEDG-------KLY-IGHVEGGLSILSLNDKSVKH-FVHDPQ----------------------------- 203 (781)
T ss_dssp CCCEEEEEEEETT-------EEE-EEETTTEEEEEETTTTEEEE-ECC--------------------------------
T ss_pred ccceEEEEECCCC-------CEE-EEecCCCeEEEcCCCCceEe-eecCCC-----------------------------
Confidence 3468888888888 333 45556568889987765322 110000
Q ss_pred eeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhhee
Q 040987 194 EDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVM 273 (762)
Q Consensus 194 ~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~ 273 (762)
....-....|.++...++|.+.++..+ .+.+||..+++......
T Consensus 204 -----------------------------------~~~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d~~~~~~~~~~~ 247 (781)
T 3v9f_A 204 -----------------------------------NPNSLPGNDVRCIYKDTNGNIWIGTSK-GLALFNANTETFTNFHN 247 (781)
T ss_dssp ----------------------------------------CCSSEEEEEECTTCCEEEEETT-EEEEEETTTTEEEC---
T ss_pred -----------------------------------CcccCCCCceeEEEEcCCCCEEEEeCC-cHheECCCCCcEEEEEc
Confidence 000001245778888888988877655 79999987765430000
Q ss_pred eee--eeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 274 RKI--TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 274 ~~~--~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
... .......|.++...++|.+ ..|+..+-|.+++..+............. +. . ......-
T Consensus 248 ~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~f~~--~~------------~--~~~~~~l 310 (781)
T 3v9f_A 248 NPGNIHGALSSYIFSIKQLKDNKL-WIATELNGIMILDLQQNQFLLPEQIRFEF--IR------------E--GDNNYSL 310 (781)
T ss_dssp --------CCCCEEEEEECTTSEE-EEEESSSCEEEEETTCC---------CEE--EC------------B--CSSTTSB
T ss_pred CCCccccccCceEEEEEECCCCCE-EEEeCCCCeEEECCCCCeeeeeecccccc--cc------------C--CCCCCCC
Confidence 000 0112457999999888874 44555456888987654321100000000 00 0 0000011
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCC----------CCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPR----------IGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
....|.++...++|. |-.|+.++-|..++..+........ ....|.++...++|.+ .+|+.++.+..|
T Consensus 311 ~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~ 388 (781)
T 3v9f_A 311 SNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVF 388 (781)
T ss_dssp SSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEE
T ss_pred CCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEE
Confidence 345688898888886 4556666778889887665433211 2346888988887764 456667789999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
+..++.... +.... ......|.++...+++.+.+ ++.++-+..+|..+++.. .+. .. ......|
T Consensus 389 ~~~~~~~~~-~~~~~------~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~---~~----~~~~~~v 452 (781)
T 3v9f_A 389 ENGKRVAIY-NKENR------ELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIE---LE----KNELLDV 452 (781)
T ss_dssp ETTEEEEEC-C-----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECC---ST----TTCCCCE
T ss_pred ECCCCeEEE-ccCCC------CCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-Eec---cC----CCCCCeE
Confidence 987543322 11000 01125788888888876544 666666889988765321 111 00 0014568
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~i 581 (762)
.++...++|++.+.. . +.+..||..+++............. ...|.++...++|.+.+ ++.++-+..
T Consensus 453 ~~i~~d~~g~lwigt----------~-~Gl~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g~lWi-gt~~~Gl~~ 519 (781)
T 3v9f_A 453 RVFYEDKNKKIWIGT----------H-AGVFVIDLASKKVIHHYDTSNSQLL-ENFVRSIAQDSEGRFWI-GTFGGGVGI 519 (781)
T ss_dssp EEEEECTTSEEEEEE----------T-TEEEEEESSSSSCCEEECTTTSSCS-CSCEEEEEECTTCCEEE-EESSSCEEE
T ss_pred EEEEECCCCCEEEEE----------C-CceEEEeCCCCeEEecccCcccccc-cceeEEEEEcCCCCEEE-EEcCCCEEE
Confidence 899888888765544 3 4688899877654322110000001 35789999999887665 444344778
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec--c-ccCceeEEEEe
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG--E-TLTPIMNMSFV 658 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~--~-~~~~v~~~~~s 658 (762)
||..+++...... ........|.++...++|++.+...+|.|..||..+++....-. + ....|.++...
T Consensus 520 ~~~~~~~~~~~~~--------~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d 591 (781)
T 3v9f_A 520 YTPDMQLVRKFNQ--------YEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISED 591 (781)
T ss_dssp ECTTCCEEEEECT--------TTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEEC
T ss_pred EeCCCCeEEEccC--------CCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEEccccCCCCCceEEEEEEC
Confidence 8876654322110 01123467899999999987665556655899988775432211 1 12358889888
Q ss_pred CCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 659 GSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 659 ~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++|.+.++ +.+| |..++..+++
T Consensus 592 ~~g~lW~~-t~~G---l~~~~~~~~~ 613 (781)
T 3v9f_A 592 KNGNIWAS-TNTG---ISCYITSKKC 613 (781)
T ss_dssp SSSCEEEE-CSSC---EEEEETTTTE
T ss_pred CCCCEEEE-cCCc---eEEEECCCCc
Confidence 88875555 4555 7778877654
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.51 E-value=9.6e-12 Score=124.71 Aligned_cols=258 Identities=8% Similarity=-0.002 Sum_probs=162.7
Q ss_pred CCeEEEEeCCCCCeEEE-------EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeec
Q 040987 395 SPLLYFTESPDPSLSSI-------SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAE 466 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~-------~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 466 (762)
....+++|++++.++++ ...++.|.+||..+++......... ..+...+..++++++ ++++++..
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~------~~~~~~~~~i~~~~~~g~l~v~~~- 90 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEV------NGYGGIPAGCQCDRDANQLFVADM- 90 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEE------TTEECCEEEEEECSSSSEEEEEET-
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEeccc------CCCCCCCceEEEecCCCcEEEEEC-
Confidence 34678999999987777 4678899999988776543322000 001146789999999 76555443
Q ss_pred CceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc------ccCCCceeEEEEEEecCC
Q 040987 467 NYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA------EEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~------~~~~~~d~~i~iwd~~~~ 539 (762)
.+.|.+||.. ++.. .+ ...... .....+.+++++++|+++++...... .......+.|..|+.. +
T Consensus 91 ~~~l~~~d~~-g~~~-~~~~~~~~~-----~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g 162 (314)
T 1pjx_A 91 RLGLLVVQTD-GTFE-EIAKKDSEG-----RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-G 162 (314)
T ss_dssp TTEEEEEETT-SCEE-ECCSBCTTS-----CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-S
T ss_pred CCCEEEEeCC-CCEE-EEEeccCCC-----ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-C
Confidence 4469999987 5432 11 110000 01245789999999988777641000 0000001566667655 3
Q ss_pred CceeEEEEEeecCCCCCceEEEEEc----CCCCeEEEE-eCCCcEEEEEcc-cccccccccCCceeeeeecccCC-CCeE
Q 040987 540 NKEFTLSTIVYEPHRDAGISAVAFH----PNRRAAVSS-SYGGDFKVWICN-DELQQKDLQSSGWSCHAVGSYKK-KAMT 612 (762)
Q Consensus 540 ~~~~~~~~~~~~~h~~~~v~~~~~s----pd~~~l~~~-~~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~ 612 (762)
+.. .+. .+ ......++|+ |+++.++.+ ..++.|.+||.. ++...... .......+. ..+.
T Consensus 163 ~~~-~~~-----~~-~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~------~~~~~~~~~~~~p~ 229 (314)
T 1pjx_A 163 QMI-QVD-----TA-FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKK------VWGHIPGTHEGGAD 229 (314)
T ss_dssp CEE-EEE-----EE-ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEE------EEEECCCCSSCEEE
T ss_pred CEE-Eec-----cC-CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccce------EEEECCCCCCCCCC
Confidence 322 221 11 3356789999 999765555 467889999986 33211100 111112222 5578
Q ss_pred EEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcC-CCCeEEEEECCC
Q 040987 613 AAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWG-SKPQLSVWNMSK 682 (762)
Q Consensus 613 ~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d-~~~~v~vwd~~~ 682 (762)
.++++++|++.++.. ++.|.+||.++++.+..+..+...+.+++|++||+.|+.++.+ +. |..|++..
T Consensus 230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~--l~~~~~~~ 299 (314)
T 1pjx_A 230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNA--VWKFEWQR 299 (314)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTE--EEEEECSS
T ss_pred ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCe--EEEEeCCC
Confidence 899999999887775 8999999999887777776666779999999999966666544 44 99999875
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-11 Score=118.41 Aligned_cols=243 Identities=6% Similarity=-0.040 Sum_probs=154.0
Q ss_pred CeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 396 PLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 396 ~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
-.....|++++.. +++...++.|+.||..+++.. .+.. . ..+.+++++++|++++. . ++.|.+||
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~-~----------~~~~~i~~~~dG~l~v~-~-~~~l~~~d 79 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVTM-D----------APVSSVALRQSGGYVAT-I-GTKFCALN 79 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEEC-S----------SCEEEEEEBTTSSEEEE-E-TTEEEEEE
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEeC-C----------CceEEEEECCCCCEEEE-E-CCeEEEEE
Confidence 3457889986554 455556789999999887653 2321 1 56789999999995554 4 56799999
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
..+++.. .+...... .....+..++++|+|+++++.................+|.+........+. .+
T Consensus 80 ~~~g~~~-~~~~~~~~-----~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-----~~- 147 (297)
T 3g4e_A 80 WKEQSAV-VLATVDND-----KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYF-----DQ- 147 (297)
T ss_dssp TTTTEEE-EEEECCTT-----CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEE-----EE-
T ss_pred CCCCcEE-EEEecCCC-----CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEe-----ec-
Confidence 9876532 22211110 014568999999999976654311000000001223455554332222221 11
Q ss_pred CCceEEEEEcCCCCeEEE-EeCCCcEEEEEcc--cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 555 DAGISAVAFHPNRRAAVS-SSYGGDFKVWICN--DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 555 ~~~v~~~~~spd~~~l~~-~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
....+.++|+||++.|+. .+.++.|.+|++. ++...... ...........+..++++++|++.++.. ++.
T Consensus 148 ~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~------~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~ 221 (297)
T 3g4e_A 148 VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR------SVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR 221 (297)
T ss_dssp ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE------EEEECCGGGCEEEEEEEBTTSCEEEEEETTTE
T ss_pred cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE------EEEECCCCCCCCCeeEECCCCCEEEEEcCCCE
Confidence 335678999999987654 4557889999973 44321100 1111112235678899999998777665 789
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEEcC
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATSWG 670 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~~d 670 (762)
|..||.++++.+..+..+...+++++|. ||++.|+.++..
T Consensus 222 v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 222 VIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred EEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 9999999999999888777789999999 888877766543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-08 Score=115.10 Aligned_cols=488 Identities=9% Similarity=-0.028 Sum_probs=279.2
Q ss_pred CeEEEEecCCcceeeeec------CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecC-------CccceeE
Q 040987 53 GLCRTAEYPAVNSKMIRG------GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG-------HKAPVTT 119 (762)
Q Consensus 53 g~i~~~~~~~~~~~~~~~------h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~-------h~~~V~~ 119 (762)
+-|..++..+++...+.. ....|.+ +...++|++.+...++-|..||.++++....... ....|.+
T Consensus 137 ~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~-i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 215 (781)
T 3v9f_A 137 RGIEYLDIATGKFTHYNKSTVPALPSEQTWT-ATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRC 215 (781)
T ss_dssp SCEEEEETTTTEEEEESTTTCTTCSCCCEEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEE
T ss_pred CCeeEEECCCCeEEeeccCcccCCCccceEE-EEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeE
Confidence 446667776655444421 1234665 7777888776644455799999887764332111 1356899
Q ss_pred EEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeecccc
Q 040987 120 VIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRET 199 (762)
Q Consensus 120 v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (762)
+...++| .+. .++.+ -+.+||..+++..........
T Consensus 216 i~~d~~g-------~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~----------------------------------- 251 (781)
T 3v9f_A 216 IYKDTNG-------NIW-IGTSK-GLALFNANTETFTNFHNNPGN----------------------------------- 251 (781)
T ss_dssp EEECTTC-------CEE-EEETT-EEEEEETTTTEEEC------------------------------------------
T ss_pred EEEcCCC-------CEE-EEeCC-cHheECCCCCcEEEEEcCCCc-----------------------------------
Confidence 9888888 233 34444 688999877653321100000
Q ss_pred CcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhhee---e--
Q 040987 200 TKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVM---R-- 274 (762)
Q Consensus 200 ~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~---~-- 274 (762)
...-....|.++...++|.+.++...+.|.+++..+........ .
T Consensus 252 ------------------------------~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~ 301 (781)
T 3v9f_A 252 ------------------------------IHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFI 301 (781)
T ss_dssp ----------------------------------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEE
T ss_pred ------------------------------cccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccc
Confidence 00001345788888888887777665788999988766431000 0
Q ss_pred -e---eeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee
Q 040987 275 -K---ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350 (762)
Q Consensus 275 -~---~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (762)
. ...-....|.++...++|. |-.|+.++-|..++........ ...... ....-.
T Consensus 302 ~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~~~~--------------------~~~~~~ 359 (781)
T 3v9f_A 302 REGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSYSPT--------------------QMNESS 359 (781)
T ss_dssp CBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------CCCSSC
T ss_pred cCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-eccCcc--------------------ccccCC
Confidence 0 0012345799999998886 4556667778889875442111 000000 000000
Q ss_pred ccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC----CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCc
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP----RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSM 426 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~ 426 (762)
-....|.++...++|+ |..|+.++-|..+|..++...... .....|.++...++|.+.+ ++.++.+..++..++
T Consensus 360 l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 437 (781)
T 3v9f_A 360 LSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLK 437 (781)
T ss_dssp CSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSC
T ss_pred CCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCC
Confidence 1234688888887775 445665667889998766554321 1235688888887776544 667778999998876
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
+....... . .....|.++...+++++.+ ++.. -|..||..+++... +.... . .......|.++..
T Consensus 438 ~~~~~~~~-~-------~~~~~v~~i~~d~~g~lwi-gt~~-Gl~~~~~~~~~~~~-~~~~~-~---~~~~~~~i~~i~~ 502 (781)
T 3v9f_A 438 KFQIIELE-K-------NELLDVRVFYEDKNKKIWI-GTHA-GVFVIDLASKKVIH-HYDTS-N---SQLLENFVRSIAQ 502 (781)
T ss_dssp EEEECCST-T-------TCCCCEEEEEECTTSEEEE-EETT-EEEEEESSSSSCCE-EECTT-T---SSCSCSCEEEEEE
T ss_pred cEEEeccC-C-------CCCCeEEEEEECCCCCEEE-EECC-ceEEEeCCCCeEEe-cccCc-c---cccccceeEEEEE
Confidence 54332211 0 0125788888888876544 4554 58899987654322 11111 0 0011356889999
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~ 586 (762)
.++|++.+... .. -+..||..+.+.. .+.. ..+-....|.++...++|.+.+.. .+|.+..||..+
T Consensus 503 d~~g~lWigt~---------~~-Gl~~~~~~~~~~~-~~~~--~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~ 568 (781)
T 3v9f_A 503 DSEGRFWIGTF---------GG-GVGIYTPDMQLVR-KFNQ--YEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARN 568 (781)
T ss_dssp CTTCCEEEEES---------SS-CEEEECTTCCEEE-EECT--TTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTT
T ss_pred cCCCCEEEEEc---------CC-CEEEEeCCCCeEE-EccC--CCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCC
Confidence 99998766553 23 3666776654321 1110 011114578999999888866544 466548888776
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEecccc----C--ceeEEEEeCC
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETL----T--PIMNMSFVGS 660 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~----~--~v~~~~~s~d 660 (762)
++...... ........|.++...++|++.+++.+| |..++.++++... +.... . ...++...++
T Consensus 569 ~~~~~~~~--------~~gl~~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~ 638 (781)
T 3v9f_A 569 FDYQVFQR--------KEGLPNTHIRAISEDKNGNIWASTNTG-ISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHN 638 (781)
T ss_dssp CCCEEECG--------GGTCSCCCCCEEEECSSSCEEEECSSC-EEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTT
T ss_pred CcEEEccc--------cCCCCCceEEEEEECCCCCEEEEcCCc-eEEEECCCCceEE-ecccCCccccccccCceEECCC
Confidence 54322110 001123467889998999876655455 7778888765433 22111 1 1345667778
Q ss_pred CCEEEEEEcCCCCeEEEEECCC
Q 040987 661 SEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 661 g~~l~s~~~d~~~~v~vwd~~~ 682 (762)
|+ |..++.+| +..++-+.
T Consensus 639 G~-l~~g~~~G---l~~f~p~~ 656 (781)
T 3v9f_A 639 GL-IYFGSING---LCFFNPDI 656 (781)
T ss_dssp SC-EEEEETTE---EEEECSCC
T ss_pred CE-EEEECCCc---eEEEChhh
Confidence 76 55677777 77777653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-10 Score=115.74 Aligned_cols=237 Identities=11% Similarity=0.019 Sum_probs=154.3
Q ss_pred cccceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 352 HPSEVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+..-..+..|++++.. +++...++.|+.||..+++... ......+.+++++++|+++++ . ++.|.+||..+++...
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 3344567899996554 4555567899999999877643 234567999999999995554 3 6789999998876544
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC---------ceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
....... .....+..++++|+|+++++.... ..-.+|.+........+... ....
T Consensus 88 ~~~~~~~------~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~----------~~~p 151 (297)
T 3g4e_A 88 LATVDND------KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ----------VDIS 151 (297)
T ss_dssp EEECCTT------CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE----------ESBE
T ss_pred EEecCCC------CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec----------cccc
Confidence 3322110 011457889999999976654321 22344444332222222111 2346
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec--CCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG--TQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDF 579 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i 579 (762)
..++|+||++.|..+.. ..+.|.+|++. ++.....-....+..+ ......++++++|++.++....+.|
T Consensus 152 ngi~~spdg~~lyv~~~--------~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-~~~p~g~~~d~~G~lwva~~~~~~v 222 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDS--------LSYSVDAFDYDLQTGQISNRRSVYKLEKE-EQIPDGMCIDAEGKLWVACYNGGRV 222 (297)
T ss_dssp EEEEECTTSCEEEEEEG--------GGTEEEEEEECTTTCCEEEEEEEEECCGG-GCEEEEEEEBTTSCEEEEEETTTEE
T ss_pred cceEEcCCCCEEEEecC--------CCCcEEEEeccCCCCcccCcEEEEECCCC-CCCCCeeEECCCCCEEEEEcCCCEE
Confidence 78999999998766652 56789999984 4432111000111223 3567889999999888887778889
Q ss_pred EEEEcccccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEEc
Q 040987 580 KVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVAA 627 (762)
Q Consensus 580 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~~ 627 (762)
.+||..+++....+. .+...+++++|+ ||++.|.+++
T Consensus 223 ~~~d~~tG~~~~~i~-----------~p~~~~t~~~f~g~d~~~L~vt~ 260 (297)
T 3g4e_A 223 IRLDPVTGKRLQTVK-----------LPVDKTTSCCFGGKNYSEMYVTC 260 (297)
T ss_dssp EEECTTTCCEEEEEE-----------CSSSBEEEEEEESGGGCEEEEEE
T ss_pred EEEcCCCceEEEEEE-----------CCCCCceEEEEeCCCCCEEEEEc
Confidence 999998777655442 234678999998 8988776654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=8e-12 Score=129.73 Aligned_cols=286 Identities=10% Similarity=0.039 Sum_probs=181.1
Q ss_pred cCCCEEEEEec-CCeEEEEecCCCceec--cCCCCCCeEEEEe-C-CCCCeEEEEe------------------cCCcEE
Q 040987 363 SDGAYLYSGGK-EGVLVVWQLDTGKKKF--LPRIGSPLLYFTE-S-PDPSLSSISC------------------ADNQVH 419 (762)
Q Consensus 363 ~~g~~l~s~~~-dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~-s-~~~~~l~~~~------------------~d~~i~ 419 (762)
+||++++.... +..|.+.|+++.+... ..........+++ + |+++++++++ .++.+.
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887665 4679999999998754 3333456788887 5 9999999884 245799
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-eEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-CIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
++|..+++...++.-. +....++++|||+++++.+.+. .....+..+......+.....
T Consensus 179 vID~~t~~v~~qI~Vg-----------g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~--------- 238 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVS-----------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI--------- 238 (595)
T ss_dssp EEETTTTEEEEEEEES-----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH---------
T ss_pred EEECCCCeEEEEEEeC-----------CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeec---------
Confidence 9999999988887632 2235688999999999888653 111111111111111110000
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC--CCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS- 574 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~- 574 (762)
....++.++|++...+ .|.+.|..+ ++. ...+.. .....++.++|||+++++++
T Consensus 239 --~~~~~~v~~Gk~~~i~-------------~V~VID~~~~~~~~~~~~Ipv-------g~~PhGv~~sPDGk~v~V~~~ 296 (595)
T 1fwx_A 239 --AEIEKAIAAGDYQELN-------------GVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGK 296 (595)
T ss_dssp --HHHHHHHHHTCSEEET-------------TEEEEECSGGGCCSSEEEEEE-------ESSCCCEEECTTSSEEEEECT
T ss_pred --cceeEeccCCCeeEEC-------------cEEEEeCcccCCceeEEEEec-------CCCceEEEEcCCCCEEEEeCC
Confidence 0000134556654432 489999998 444 334432 22344799999999877765
Q ss_pred CCCcEEEEEcccccccc--cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC----------Ce
Q 040987 575 YGGDFKVWICNDELQQK--DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR----------NV 640 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~----------~~ 640 (762)
.+.+|.++|+.+.+... .+. .. .+......-......++|+||| .+.+.. |+.|.+||+++ .+
T Consensus 297 ~s~~VsVid~~~~~~~~~~~l~-~~-~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~ 373 (595)
T 1fwx_A 297 LSPTVTVLDVTRFDAVFYENAD-PR-SAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDP 373 (595)
T ss_dssp TSSBEEEEEGGGHHHHHHSCCC-GG-GGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCC
T ss_pred CCCeEEEEECcccccccccccC-cc-cceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccce
Confidence 56789999998653210 000 00 0000011234677899999999 665554 99999999987 56
Q ss_pred EEEEeccccCce-----eEEEEeCCCCEEEEEEcCCCCeE-----------EEEECCCCceeeEEEEee
Q 040987 641 LVAVIGETLTPI-----MNMSFVGSSEYLVATSWGSKPQL-----------SVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 641 ~~~~l~~~~~~v-----~~~~~s~dg~~l~s~~~d~~~~v-----------~vwd~~~~~~~~~~~~~~ 693 (762)
.+..+..|..+- ....++|||++|+++..-...++ .++|+..+++......+.
T Consensus 374 vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv~d~p~ 442 (595)
T 1fwx_A 374 IKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGPT 442 (595)
T ss_dssp EEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred eEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEEEEEcC
Confidence 777776665432 22356899999999865432235 899998888766666555
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=4.8e-10 Score=112.46 Aligned_cols=236 Identities=11% Similarity=-0.034 Sum_probs=150.5
Q ss_pred eEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 397 LLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 397 v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
...+.|+|++.. +++...++.|..||..+++... +.. . ..+.+++++++|+++++. .+ .|.+||.
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-~----------~~v~~i~~~~dg~l~v~~-~~-gl~~~d~ 116 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-P----------FMGSALAKISDSKQLIAS-DD-GLFLRDT 116 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-S----------SCEEEEEEEETTEEEEEE-TT-EEEEEET
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-C----------CcceEEEEeCCCeEEEEE-CC-CEEEEEC
Confidence 456889997554 5555567899999998876432 221 1 467899999999877654 44 4999998
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.+++.. .+...... .....+..++++|+|+++++.... ......+.|..++ +++. ..+. .+ .
T Consensus 117 ~~g~~~-~~~~~~~~-----~~~~~~~~i~~d~~G~l~v~~~~~---~~~~~~~~l~~~~--~g~~-~~~~-----~~-~ 178 (326)
T 2ghs_A 117 ATGVLT-LHAELESD-----LPGNRSNDGRMHPSGALWIGTMGR---KAETGAGSIYHVA--KGKV-TKLF-----AD-I 178 (326)
T ss_dssp TTCCEE-EEECSSTT-----CTTEEEEEEEECTTSCEEEEEEET---TCCTTCEEEEEEE--TTEE-EEEE-----EE-E
T ss_pred CCCcEE-EEeeCCCC-----CCCCCCCCEEECCCCCEEEEeCCC---cCCCCceEEEEEe--CCcE-EEee-----CC-C
Confidence 877532 22111100 113568999999999976654310 0000124566666 3322 2221 11 2
Q ss_pred CceEEEEEcCCCCeEEEE-eCCCcEEEEEcc--cc-cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCe
Q 040987 556 AGISAVAFHPNRRAAVSS-SYGGDFKVWICN--DE-LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETV 630 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~ 630 (762)
.....++|+||++.++.+ +.++.|.+||+. ++ ...... ...........+..++++++|++.++.. ++.
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~------~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~ 252 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE------VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGA 252 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE------EEEECTTSSSEEEEEEECTTSCEEEEEETTTE
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce------EEEECCCCCCCCCeeEECCCCCEEEEEeCCCE
Confidence 356789999999877555 456789999986 44 221100 0011112234567899999998777665 789
Q ss_pred EEEEeCCCCeEEEEeccccCceeEEEEe-CCCCEEEEEEcCC
Q 040987 631 ITLWDPDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATSWGS 671 (762)
Q Consensus 631 i~iwd~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~~d~ 671 (762)
|.+||. +++.+..+..+...+.+++|+ +|++.|+.++..+
T Consensus 253 v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 253 VDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred EEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecCC
Confidence 999998 577777777676679999999 8888776665443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.3e-11 Score=116.63 Aligned_cols=248 Identities=11% Similarity=-0.014 Sum_probs=157.8
Q ss_pred CCCCCeEEEEeCCCCC-eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceE
Q 040987 392 RIGSPLLYFTESPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCI 470 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 470 (762)
..........|+++|+ ++++...++.|..|+.. ++. ..+.... ..+..++++++|+++++...++.|
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~~----------~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDAT----------AFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEESC----------SCEEEEEECTTSCEEEEETTTTEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCCC----------CccceeeECCCCCEEEEECCCCEE
Confidence 3344567899999998 45555567899999984 443 3333332 567899999999977666566789
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE----Eeeeccc----cCCCceeEEEEEEecCCCce
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST----VDIKLAE----EGIGSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~----~~~~~~~----~~~~~d~~i~iwd~~~~~~~ 542 (762)
..|+.. ++ ...+....... ....+..++++|+|++.++ +.....+ ......+.|..||..+++..
T Consensus 110 ~~~~~~-g~-~~~~~~~~~~~-----~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~ 182 (305)
T 3dr2_A 110 TRSDAD-GQ-AHLLVGRYAGK-----RLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ 182 (305)
T ss_dssp EEECTT-SC-EEEEECEETTE-----ECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred EEECCC-CC-EEEEEeccCCC-----ccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence 999975 43 22222111110 0234667999999998886 2210000 00001357777877666543
Q ss_pred eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEE
Q 040987 543 FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAF 616 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 616 (762)
... . ......++|+||++.|+.+... +.|++|++..+. ..... .. ..........+++
T Consensus 183 ~~~-------~-~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~-----~~--~~~~~~~pdgi~~ 246 (305)
T 3dr2_A 183 RMA-------D-LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRR-----HF--ASVPDGLPDGFCV 246 (305)
T ss_dssp EEE-------E-ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEE-----EE--ECCSSSCCCSEEE
T ss_pred EEe-------c-CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCe-----EE--EECCCCCCCeEEE
Confidence 322 1 3356789999999988777665 689999987544 11100 00 0112344567899
Q ss_pred cCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 617 SADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 617 s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
+++|++.+ +..+.|.+|+.+ ++.+..+..+. .+.+++|+++++.|+.++.++ +..+++
T Consensus 247 d~~G~lwv-~~~~gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~---l~~~~~ 304 (305)
T 3dr2_A 247 DRGGWLWS-SSGTGVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQQRLFITGGPC---LWMLPL 304 (305)
T ss_dssp CTTSCEEE-CCSSEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEEEETTE---EEEEEC
T ss_pred CCCCCEEE-ecCCcEEEECCC-CCEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe---EEEEEC
Confidence 99999544 444459999984 77777776554 588999999999999888876 555443
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-10 Score=114.92 Aligned_cols=248 Identities=8% Similarity=-0.086 Sum_probs=157.8
Q ss_pred eeeeccccceeEEEEecCCC-EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 347 TTWHWHPSEVSVLIFSSDGA-YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~-~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..+.........+.|+++|+ .+++...++.|..|+. +++...+......+..++++++|+++++...++.|.+|+..
T Consensus 38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~- 115 (305)
T 3dr2_A 38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD- 115 (305)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence 44555556678899999998 4556667789999998 45554444456678999999999977665556789999986
Q ss_pred ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE----eec-------------CceEEEEEcCCCCceeeEEeec
Q 040987 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL----RAE-------------NYCIHFYSLLDDRGISEVQVCE 488 (762)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~----~~~-------------dg~i~i~d~~~~~~~~~~~~~~ 488 (762)
++.......... .....+..++++++|+++++ +.. .+.|+.+|..+++..... .
T Consensus 116 g~~~~~~~~~~~------~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~- 186 (305)
T 3dr2_A 116 GQAHLLVGRYAG------KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--D- 186 (305)
T ss_dssp SCEEEEECEETT------EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--E-
T ss_pred CCEEEEEeccCC------CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--c-
Confidence 553322211110 00134678999999998876 331 356888887666543322 1
Q ss_pred ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 489 RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 489 ~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
......++|+||++.|+++..... ....+.|.+|++.... ....... .... ......++++++|+
T Consensus 187 ---------~~~p~gl~~spdg~~lyv~~~~~~---~~~~~~i~~~~~~~~~-l~~~~~~-~~~~-~~~pdgi~~d~~G~ 251 (305)
T 3dr2_A 187 ---------LDHPNGLAFSPDEQTLYVSQTPEQ---GHGSVEITAFAWRDGA-LHDRRHF-ASVP-DGLPDGFCVDRGGW 251 (305)
T ss_dssp ---------ESSEEEEEECTTSSEEEEEECCC------CCCEEEEEEEETTE-EEEEEEE-ECCS-SSCCCSEEECTTSC
T ss_pred ---------CCCCcceEEcCCCCEEEEEecCCc---CCCCCEEEEEEecCCC-ccCCeEE-EECC-CCCCCeEEECCCCC
Confidence 233678999999998887762100 0002689999998654 2111111 1112 33456789999999
Q ss_pred eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
+.++ +.+ .|.+|+.. ++....+. . ...+.+++|+|+++.|.+++.+.++.++
T Consensus 252 lwv~-~~~-gv~~~~~~-g~~~~~~~-----------~-~~~~~~~~f~~d~~~L~it~~~~l~~~~ 303 (305)
T 3dr2_A 252 LWSS-SGT-GVCVFDSD-GQLLGHIP-----------T-PGTASNCTFDQAQQRLFITGGPCLWMLP 303 (305)
T ss_dssp EEEC-CSS-EEEEECTT-SCEEEEEE-----------C-SSCCCEEEECTTSCEEEEEETTEEEEEE
T ss_pred EEEe-cCC-cEEEECCC-CCEEEEEE-----------C-CCceeEEEEeCCCCEEEEEcCCeEEEEE
Confidence 5554 444 49999984 33333221 1 2257899999999988888755555444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=124.51 Aligned_cols=268 Identities=9% Similarity=-0.038 Sum_probs=170.3
Q ss_pred ccccCCceeecCCCEEEEEe---CCEEEEEEcccceEEeee-------cCCccceeEEEEeCCCCcccceeeeEEeeec-
Q 040987 73 SYVSSPPAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSL-------EGHKAPVTTVIVVPASTPATKILSYCWTASL- 141 (762)
Q Consensus 73 ~~v~~~~~~s~dg~~la~~~---~~~i~iwd~~~~~~~~~l-------~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~- 141 (762)
..... +++++||+++++.. ++.+.||.+.+++.. .+ .+|-..+.+++|++++ .++++-..
T Consensus 17 ~~p~~-va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g-------~L~v~D~g~ 87 (343)
T 2qe8_A 17 LAPGN-ITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNG-------IVWMLDNGN 87 (343)
T ss_dssp SCEEE-EEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSS-------EEEEEECHH
T ss_pred CCcce-EEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCC-------cEEEEcCCC
Confidence 45555 99999999998864 243556665566543 22 2456789999999999 44443332
Q ss_pred ----CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEE
Q 040987 142 ----DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRIC 217 (762)
Q Consensus 142 ----d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~ 217 (762)
+..|.+||+.+++.++.+.....
T Consensus 88 ~~~~~~~i~~~d~~tg~~~~~~~~~~~----------------------------------------------------- 114 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQLSRVIYLPPP----------------------------------------------------- 114 (343)
T ss_dssp HHTSCCEEEEEETTTTEEEEEEECCTT-----------------------------------------------------
T ss_pred CcCCCCeEEEEECCCCeEEEEEECChh-----------------------------------------------------
Confidence 57899999999887766542110
Q ss_pred EEecCCccccceeeeccCCCceEEEECCCCCEE-EEE----eCCeEEEEEccCchhhhheeeeeeeccCcCeE-EEEEcC
Q 040987 218 KCNLTESRLAGGVTLAEMKEPQVITISSSGKYF-GIR----KQRKLLIWKVPDVEAERVVMRKITLHHTKKLT-VLAFHP 291 (762)
Q Consensus 218 iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l-a~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp 291 (762)
...+...+..++++|++..+ ++. .++.|.+||+.+++.. +....|..... ...+.+
T Consensus 115 -------------~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~-----r~~~~~~~~~~~~~~~~~ 176 (343)
T 2qe8_A 115 -------------ITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAA-----RVLQGYPGIAPEDIDLVI 176 (343)
T ss_dssp -------------TSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEE-----EECTTCTTTSCCSCCCEE
T ss_pred -------------hcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEE-----EEecCCCcccccccceeE
Confidence 00123456788999865554 333 4689999999877643 33333321110 134555
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
+|..+.+.+.+|.+..|.. .+..++|+|||+.|+.+
T Consensus 177 ~g~~~~~~~~~g~~~~~~~--------------------------------------------~~~gia~s~dg~~ly~~ 212 (343)
T 2qe8_A 177 DGVPVQIGQPDGTVIRPHL--------------------------------------------GVNGIVLDAENEWLYLS 212 (343)
T ss_dssp TTEECBEECTTSCEECCCC--------------------------------------------CEEEEEECTTSCEEEEE
T ss_pred CCEEEEeccCCCceeceec--------------------------------------------ccceeEeccCCCEEEEE
Confidence 7777777777777665532 25679999999999888
Q ss_pred ecCC-eEEEEecCC---Cce---e-----ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCC
Q 040987 372 GKEG-VLVVWQLDT---GKK---K-----FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 372 ~~dg-~i~~wd~~~---~~~---~-----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
...+ .++.++... +.. . ...........++++++|.++++...++.|.+||..+++.........
T Consensus 213 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~--- 289 (343)
T 2qe8_A 213 PMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEK--- 289 (343)
T ss_dssp ESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGG---
T ss_pred eCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCc---
Confidence 7665 555555321 110 0 011122345568999999988888888999999995566433332211
Q ss_pred CCCCcccCceeeEEEeCCCCEEEEeecCceEEEE
Q 040987 440 PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFY 473 (762)
Q Consensus 440 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~ 473 (762)
-..+.+++|.++++++++.+..+.+.+|
T Consensus 290 ------~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 290 ------LSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp ------GSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred ------eecCCeeEECCCCcEEEEeCcccccccc
Confidence 1467899999998887777655544433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.7e-12 Score=125.89 Aligned_cols=275 Identities=7% Similarity=-0.131 Sum_probs=166.7
Q ss_pred eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 376 VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 376 ~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+|.++|..+++.+.....+..- .+.++||+++++++. .++.|.+||+.+++.+.++....... .. .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~-~~--~ 122 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR-FS--V 122 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS-CC--B
T ss_pred eEEEEECCCCeEEEEEeCCCCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc-cc--c
Confidence 8899999999886433333323 799999999999886 36789999999999999886431000 00 0
Q ss_pred cCceeeEEEeCCCCEEEEeec--CceEEE--EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 446 KGLCRDIAFNHDGGLVALRAE--NYCIHF--YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~--dg~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
......++++|||++++++.. +..+.+ +|..+ +.++.... ++.+.|+++....+..
T Consensus 123 g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--------------~~~~~p~g~~~~~~~~--- 182 (368)
T 1mda_H 123 GPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--------------CFHIHPGAAATHYLGS--- 182 (368)
T ss_dssp SCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--------------CCCCEEEETTEEECCC---
T ss_pred CCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--------------ceEEccCCCeEEEEEc---
Confidence 013467999999999998864 467888 88876 33332210 0112344432222211
Q ss_pred ccCCCceeEEEEEEecC-----CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC
Q 040987 522 EEGIGSLVCLKFWVSGT-----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~-----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.|+.+.+.++.+ ++...........+ ..+. . ++++..++..+. +.+.+.|..+.......
T Consensus 183 -----~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg--~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~--- 247 (368)
T 1mda_H 183 -----CPASLAASDLAAAPAAAGIVGAQCTGAQNCS--SQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA--- 247 (368)
T ss_dssp -----CTTSCEEEECCSSCCCCEECCCCSCTTSCBC--SCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC---
T ss_pred -----CCCCEEEEECccccccCCeEEEEeeeeeeCC--CCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE---
Confidence 445555556654 21110000000011 2222 3 666666666666 89999998653211100
Q ss_pred ceeeee----ecccCCCCeEEEEEcCCCcEEEEEc--C--------CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCC
Q 040987 597 GWSCHA----VGSYKKKAMTAAAFSADGSVLAVAA--E--------TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSE 662 (762)
Q Consensus 597 ~~~~~~----~~~~~~~~i~~~~~s~dg~~la~~~--d--------~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~ 662 (762)
.|.... ...........++++|||+.+.++. + +.+.++|+.+++.+..+.... ....++|+|||+
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~ 326 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGA 326 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSS
T ss_pred EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCC
Confidence 010000 0000011222268999999887653 3 367799999999999886543 578999999998
Q ss_pred EE-EEEE-cCCCCeEEEEECCCCceeeEEEEe
Q 040987 663 YL-VATS-WGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 663 ~l-~s~~-~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
++ ++.. .++. |.++|+.+++.+..+...
T Consensus 327 ~l~va~~~~~~~--VsVID~~t~kvv~~I~vg 356 (368)
T 1mda_H 327 SDNYANSAGTEV--LDIYDAASDQDQSSVELD 356 (368)
T ss_dssp CEEEEEETTTTE--EEEEESSSCEEEEECCCC
T ss_pred EEEEEccCCCCe--EEEEECCCCcEEEEEECC
Confidence 54 5555 3666 999999999988766543
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.5e-11 Score=121.67 Aligned_cols=268 Identities=8% Similarity=-0.083 Sum_probs=162.2
Q ss_pred eEEEEecCCcceeee-ecCcccccCCceeecCCCEEEEEe-----------CCEEEEEEcccceEEeeecCC-------c
Q 040987 54 LCRTAEYPAVNSKMI-RGGRSYVSSPPAFSNDVKRLLVCT-----------SNTVSIFSTSTGLQISSLEGH-------K 114 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~-~~h~~~v~~~~~~s~dg~~la~~~-----------~~~i~iwd~~~~~~~~~l~~h-------~ 114 (762)
.|.++|..+.+.+.. .....+ . ++|||||++|.++. ++.|.+||+.+++.+.++.-+ .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~-i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--c-eEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 888999998776643 333344 5 99999999999885 489999999999999998633 1
Q ss_pred cceeEEEEeCCCCcccceeeeEEeeec--CCeEEE--EeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEE
Q 040987 115 APVTTVIVVPASTPATKILSYCWTASL--DGTIKY--WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190 (762)
Q Consensus 115 ~~V~~v~~s~~~~~~~~l~~~l~s~s~--d~~i~v--Wd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (762)
.....++|+||| ++|+.+.. +..|.+ +|..+ ++++.....
T Consensus 124 ~~P~~ia~SpDG-------k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-------------------------- 167 (368)
T 1mda_H 124 PRVHIIGNCASS-------ACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-------------------------- 167 (368)
T ss_dssp CCTTSEEECTTS-------SCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--------------------------
T ss_pred CCcceEEEcCCC-------CEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--------------------------
Confidence 346789999999 56666653 467888 99876 343321100
Q ss_pred EEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCC--EEEEEeCCeEEEEEccC---
Q 040987 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK--YFGIRKQRKLLIWKVPD--- 265 (762)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~la~~~~~~i~iwd~~~--- 265 (762)
+.+.|+|+ +++.+.|+.+.+.++.+
T Consensus 168 --------------------------------------------------~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~ 197 (368)
T 1mda_H 168 --------------------------------------------------FHIHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp --------------------------------------------------CCCEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred --------------------------------------------------eEEccCCCeEEEEEcCCCCEEEEECccccc
Confidence 00111221 11222334444444443
Q ss_pred --chhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce-ee-cccccccccccccccCCCCcccCC
Q 040987 266 --VEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT-FA-TNDNKMNLNLMNNEEERPGVRDND 341 (762)
Q Consensus 266 --~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 341 (762)
++...... ....-...+. + ++++..++..+. +.|.+.|..+... +. ...-. .
T Consensus 198 ~~~~v~~~~t-~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~------------------~ 253 (368)
T 1mda_H 198 AAGIVGAQCT-GAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGN------------------E 253 (368)
T ss_dssp CCEECCCCSC-TTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSS------------------C
T ss_pred cCCeEEEEee-eeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEec------------------c
Confidence 22110000 0011112233 3 566666666666 8999999865321 10 00000 0
Q ss_pred ccccceeeeccccceeEEEEecCCCEEEEEec---------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK---------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 342 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.......+ .......++++||+++++.+.. ++.+.++|+.+.+.......+.....++++|||++++++
T Consensus 254 ~~~~~~~~--~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 254 SGRKADNF--RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYA 331 (368)
T ss_dssp THHHHTTE--EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEE
T ss_pred cccccccc--ccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEE
Confidence 00000001 1112223689999998887543 235669999999887655555578899999999865544
Q ss_pred e--cCCcEEEEEcCCceEEEEEccCC
Q 040987 413 C--ADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 413 ~--~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
. .++.|.++|+.+++.+.++....
T Consensus 332 ~~~~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 332 NSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EETTTTEEEEEESSSCEEEEECCCCS
T ss_pred ccCCCCeEEEEECCCCcEEEEEECCC
Confidence 4 48999999999999999987654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=120.23 Aligned_cols=261 Identities=8% Similarity=-0.095 Sum_probs=161.4
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCceEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSMEIIRS 431 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 431 (762)
.....++|+++++.+++...++.|++||.+++....+........ ++|+++++.|+++..++ .|.+++...+.....
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~ 209 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR 209 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence 357789999999877776667899999999887754433333334 99999999999887765 788898876544333
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee-cccccCCCCcceeEEEEEEecCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC-ERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
+..... .....+.+++++|++..|+++..++.|+.||..++.. ..+... ..+. .. ..+...++|+|++
T Consensus 210 ~g~~~~------~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~-~~~~~~~~~g~---~~-~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 210 IGQLGS------TFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV-TLIKQLELSGS---LG-TNPGPYLIYYFVD 278 (409)
T ss_dssp EEECCT------TSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE-EEEEECCCCSC---CC-CSSCCEEEEETTT
T ss_pred eeeccc------hhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE-EEEecccccCC---CC-CCccccEEEeCCC
Confidence 310000 0014568899999555566677788999999987652 222110 1100 00 1111289999965
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe-ecCC--------CCCceEEEEEcCCCCeEEEEe-CCCcEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPH--------RDAGISAVAFHPNRRAAVSSS-YGGDFK 580 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h--------~~~~v~~~~~spd~~~l~~~~-~dg~i~ 580 (762)
..|..+.. ..+.|+.|+.... ...+.... ..+. .-.....++++|+|+++++-+ .++.|+
T Consensus 279 g~lyv~d~--------~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 279 SNFYMSDQ--------NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp TEEEEEET--------TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred CEEEEEeC--------CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 55555442 6678999987643 22221100 0000 013478999999999877777 788999
Q ss_pred EEEcccccccccccCC---ceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 581 VWICNDELQQKDLQSS---GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
.|++.++......... .+..-......-.....++++++|.++++-. +++|+.+++
T Consensus 349 ~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 9997766543222100 0000000001124678999999987776665 788888765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-11 Score=133.16 Aligned_cols=250 Identities=10% Similarity=0.014 Sum_probs=162.4
Q ss_pred CCCeEEEEeCCCCCeEEEEec-----CCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 394 GSPLLYFTESPDPSLSSISCA-----DNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~~-----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
...+..++|||||++|+.+.. ...|+++|+.+++.+.. +.+ .....++|+ |++.|+.++.+
T Consensus 128 ~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~------------~k~~~~~Ws-Dg~~l~y~~~~ 194 (693)
T 3iuj_A 128 TTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD------------VKFSGISWL-GNEGFFYSSYD 194 (693)
T ss_dssp CCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE------------EESCCCEEE-TTTEEEEEESS
T ss_pred cEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC------------ceeccEEEe-CCCEEEEEEec
Confidence 346788899999999986543 24699999999886553 211 113578999 99999998877
Q ss_pred c-------------eEEEEEcCCCCceeeEEeeccc-ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 468 Y-------------CIHFYSLLDDRGISEVQVCERN-HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 468 g-------------~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
. .|++|++.++.....+...... + ......+.++|||++|+..... ......|++
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~------~~~~~~~~~SpDg~~l~~~~~~-----~~~~~~i~~ 263 (693)
T 3iuj_A 195 KPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ------HHRYVGATVTEDDRFLLISAAN-----STSGNRLYV 263 (693)
T ss_dssp CCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG------CCSEEEEEECTTSCEEEEEEES-----SSSCCEEEE
T ss_pred CcccccccccCCCcEEEEEECCCCcccceEEEecCCCC------CeEEEEEEEcCCCCEEEEEEcc-----CCCCcEEEE
Confidence 4 4999999876543333222221 1 2346788999999998776521 012358999
Q ss_pred EEecCCCc-eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-C---CcEEEEEcccccccccccCCceeeeeecccCC
Q 040987 534 WVSGTQNK-EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-G---GDFKVWICNDELQQKDLQSSGWSCHAVGSYKK 608 (762)
Q Consensus 534 wd~~~~~~-~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
+|+.++.. ...+ ..+ ....... ++++|..|+..+. + +.|..+|+.++... .|... ..+.
T Consensus 264 ~d~~~~~~~~~~l-----~~~-~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~------~~~~l---~~~~ 327 (693)
T 3iuj_A 264 KDLSQENAPLLTV-----QGD-LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA------HWRDL---IPER 327 (693)
T ss_dssp EETTSTTCCCEEE-----ECS-SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG------GCEEE---ECCC
T ss_pred EECCCCCCceEEE-----eCC-CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc------ccEEE---ecCC
Confidence 99987642 2333 233 4444444 6677666655543 3 56888998876431 11111 1233
Q ss_pred CCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEec-cccCceeEEEEeCCCCEEEEEEcC--CCCeEEEEECC
Q 040987 609 KAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIG-ETLTPIMNMSFVGSSEYLVATSWG--SKPQLSVWNMS 681 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~-~~~~~v~~~~~s~dg~~l~s~~~d--~~~~v~vwd~~ 681 (762)
..+. .|+++++.|+... ++ .|++|+++.+.. ..+. .....+..+.+++|++.|+....+ ..+.|+.||+.
T Consensus 328 ~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 328 QQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp SSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 3444 8999999888775 54 789999986544 3443 234557788888888877766544 22349999998
Q ss_pred CCcee
Q 040987 682 KLSIS 686 (762)
Q Consensus 682 ~~~~~ 686 (762)
+++..
T Consensus 405 ~g~~~ 409 (693)
T 3iuj_A 405 SGAIS 409 (693)
T ss_dssp TCCEE
T ss_pred CCeEE
Confidence 88754
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-10 Score=120.46 Aligned_cols=253 Identities=8% Similarity=0.010 Sum_probs=156.6
Q ss_pred cccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC--eEEEEeC
Q 040987 74 YVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG--TIKYWDF 150 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~--~i~vWd~ 150 (762)
.... ++|+++|+++++.. ++.|++||.++++........ .... ++|+|++ ..|+.+..++ .|.+||.
T Consensus 132 ~P~~-la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~~g-------~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 132 YMWG-IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTKDK-------QRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CEEE-EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECTTS-------SEEEEEBSSTTCEEEEEEG
T ss_pred CceE-EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEecCC-------CcEEEEecCCCceEEEEEc
Confidence 3444 89999999777666 489999999888776655543 3334 9999999 5666776655 7888887
Q ss_pred CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 151 SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.++.....+.. .
T Consensus 202 ~~~~~~~~~g~--------------------------------------------------------------------~ 213 (409)
T 3hrp_A 202 ASGWAPTRIGQ--------------------------------------------------------------------L 213 (409)
T ss_dssp GGTTCEEEEEE--------------------------------------------------------------------C
T ss_pred CCCceeEEeee--------------------------------------------------------------------c
Confidence 66543322210 0
Q ss_pred eeccCCCceEEEECC-CCCEEEEEeCCeEEEEEccCchhhhheeeee-eeccCcCe--EEEEEcCC-CcEEEEeecCCeE
Q 040987 231 TLAEMKEPQVITISS-SGKYFGIRKQRKLLIWKVPDVEAERVVMRKI-TLHHTKKL--TVLAFHPT-QRIVAAGDVTGRI 305 (762)
Q Consensus 231 ~~~~~~~v~~~~~sp-dg~~la~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~~~v--~~~~~sp~-~~~l~~~~~dg~v 305 (762)
.......+.+++++| +|.++++..++.|+.||..++... ..... ..++...- ..++|+|+ +.++++-..++.|
T Consensus 214 ~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~--~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 214 GSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT--LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSV 291 (409)
T ss_dssp CTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE--EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEE
T ss_pred cchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE--EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEE
Confidence 001234567889999 455555445788999999876532 11000 11222222 39999995 6555666668899
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDT 384 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~ 384 (762)
+.|+..+........... .. ..++ ......-.....++++++|+++++-. .++.|+.|++.+
T Consensus 292 ~~~~~~g~~~~~~g~~~~-----------~g---~~dg---~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~ 354 (409)
T 3hrp_A 292 YKITPDGECEWFCGSATQ-----------KT---VQDG---LREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILD 354 (409)
T ss_dssp EEECTTCCEEEEEECTTC-----------CS---CBCE---EGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTT
T ss_pred EEEecCCCEEEEEeCCCC-----------CC---cCCC---cccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCC
Confidence 999876542111000000 00 0000 00001123467899999999777766 788999999877
Q ss_pred CceeccCCC---------------CCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 385 GKKKFLPRI---------------GSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 385 ~~~~~~~~~---------------~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
+....+... -.....++++++|.++++-..++.|+.+++
T Consensus 355 G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 355 GYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 776433322 135788999999877777667778887765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.5e-11 Score=132.73 Aligned_cols=312 Identities=9% Similarity=0.025 Sum_probs=198.9
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC------------eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP------------LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~------------v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|.++|+.+........ ...+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 44677777789999999999988543222211 011222 4678888889999999999999999888
Q ss_pred ccC-CCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccc-cCC---------
Q 040987 433 SGI-KLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNH-QPG--------- 494 (762)
Q Consensus 433 ~~~-~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~-~~~--------- 494 (762)
... .... ...+. ...+. +..+++++. ++.|+.||..+++.+.++....... .+.
T Consensus 155 ~~~~~~~~------~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~ 226 (677)
T 1kb0_A 155 NTFEGQKG------SLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAA 226 (677)
T ss_dssp ETTTTCCS------SCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHH
T ss_pred cCCcCcCc------CcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccc
Confidence 754 1100 00111 11122 345555543 6899999999999888775432210 000
Q ss_pred ------C------CcceeEEEEEEecCCCeEEEEeeeccc-----------cCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 495 ------D------DVTVVVTLVALSQDGSLMSTVDIKLAE-----------EGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 495 ------~------~~~~~v~~~~~sp~g~~l~~~~~~~~~-----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
. ........++++|++..+..+..+... +.. ..+.|..+|..+++..+.++. .
T Consensus 227 ~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~-~~~sv~AlD~~TG~~~W~~~~---~ 302 (677)
T 1kb0_A 227 RTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNL-YLASIVALDPDTGKYKWHYQE---T 302 (677)
T ss_dssp TTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT-TTTEEEEECTTTCCEEEEEES---S
T ss_pred ccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCe-eeEEEEEEECCCCCEEEEEec---C
Confidence 0 001112357889999888887621000 000 012699999999998887753 2
Q ss_pred CCC------CCceEEEEEcCCC---CeEEEEeCCCcEEEEEccccccccccc--CCceeeeee-----------------
Q 040987 552 PHR------DAGISAVAFHPNR---RAAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAV----------------- 603 (762)
Q Consensus 552 ~h~------~~~v~~~~~spd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~----------------- 603 (762)
+|. ......+....+| +.++.++.+|.++++|..+++.+...+ ...|.....
T Consensus 303 ~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 382 (677)
T 1kb0_A 303 PGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKP 382 (677)
T ss_dssp TTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSC
T ss_pred CCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCc
Confidence 220 0112223333477 688899999999999999998765442 111211000
Q ss_pred ---cccC--CCCeEEEEEcCCCcEEEEEc-C-------------------------------------------CeEEEE
Q 040987 604 ---GSYK--KKAMTAAAFSADGSVLAVAA-E-------------------------------------------TVITLW 634 (762)
Q Consensus 604 ---~~~~--~~~i~~~~~s~dg~~la~~~-d-------------------------------------------~~i~iw 634 (762)
.... ...-..++|+|++.++++.. + +.|..|
T Consensus 383 ~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~ 462 (677)
T 1kb0_A 383 QDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAW 462 (677)
T ss_dssp EECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEE
T ss_pred cEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEE
Confidence 0000 01112678999988887753 2 789999
Q ss_pred eCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 635 DPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 635 d~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
|+.+++.+-... +..++....++.++.+++.++.|+. +++||..+|+++|++....
T Consensus 463 D~~tG~~~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~--l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 463 DPVAQKAAWSVE-HVSPWNGGTLTTAGNVVFQGTADGR--LVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp ETTTTEEEEEEE-ESSSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred eCCCCcEEeecC-CCCCCcCcceEeCCCEEEEECCCCc--EEEEECCCCceeeeeeCCC
Confidence 999999888876 4445666677888889999988987 9999999999999998665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-11 Score=120.66 Aligned_cols=185 Identities=12% Similarity=-0.008 Sum_probs=135.5
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhh------eeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEec
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERV------VMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG 310 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~ 310 (762)
.++.+++++...+++++....+.+|++........ .. .....+.. |+.++| |+++|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~-~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTF-KWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCC-SEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccc-eEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 68999999999999988888999999876551100 11 12234566 999999 99999999 8899999998
Q ss_pred cCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc
Q 040987 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL 390 (762)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~ 390 (762)
...... .....|...+.++.+.+. .++++..||.|.+||+.++....
T Consensus 114 ~sl~~~------------------------------~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~- 160 (388)
T 1xip_A 114 EELSEF------------------------------RTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ- 160 (388)
T ss_dssp SSTTCE------------------------------EEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-
T ss_pred hhhhcc------------------------------CccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-
Confidence 655321 234456667778777654 38888999999999999887653
Q ss_pred CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE--EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 391 PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI--IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 391 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
+...|.+++|||+| ++.+..||.+++|+...++. ..++..... ......+...|.++.|.+++.++++-
T Consensus 161 --~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~-~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 161 --LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSE-LEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp --EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHH-HHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred --ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcc-cccccCCCeeEEEEEEecCCeEEEEE
Confidence 45689999999999 67788999999999987775 555521100 00000123789999999998887753
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-10 Score=128.47 Aligned_cols=329 Identities=9% Similarity=0.006 Sum_probs=198.9
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..|++++.++.|..+|..+++.+-......... .......+ .....+++ ++..|+.++
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~------------------~~~~~~~~-~~~~~~a~--~~~~v~v~~ 135 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRS------------------TGFKGCCD-VVNRGVAL--WKGKVYVGA 135 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGG------------------GGGGSSSC-SCCCCCEE--ETTEEEEEC
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcc------------------cccccccc-CCCCCceE--ECCEEEEEc
Confidence 4456677778899999998887654221110000 00000000 00012222 356788888
Q ss_pred cCCeEEEEecCCCceeccCCCC------CCeEE-EEeCCCCCeEEEEec------CCcEEEEEcCCceEEEEEccCCCCC
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIG------SPLLY-FTESPDPSLSSISCA------DNQVHLLKMPSMEIIRSISGIKLPC 439 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~------~~v~~-~~~s~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~~~ 439 (762)
.|+.|..+|.++|+.+...... ..+.. ... .+..+++++. ++.|+.+|..+|+.+..+.......
T Consensus 136 ~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 136 WDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp TTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred CCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCc
Confidence 8999999999999985322221 11111 111 2345555543 6899999999999998876533211
Q ss_pred CCCC----------------------cccCceeeEEEeCCCCEEEEeecCc-------------------eEEEEEcCCC
Q 040987 440 PLPE----------------------EYKGLCRDIAFNHDGGLVALRAENY-------------------CIHFYSLLDD 478 (762)
Q Consensus 440 ~~~~----------------------~~~~~v~~~~~s~~~~~l~~~~~dg-------------------~i~i~d~~~~ 478 (762)
..+. ........++++|++..+++++.++ .|..+|..++
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG 293 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTG 293 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTC
T ss_pred cccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCC
Confidence 0000 0001124678999999998887664 5999999999
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------ 549 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------ 549 (762)
+....++......-.... .....-+....+| +.++.++ .++.++++|..+++.+.......
T Consensus 294 ~~~W~~~~~~~d~wd~~~-~~~p~l~~~~~dG~~~~~l~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 294 KYKWHYQETPGDNWDYTS-TQPMILADIKIAGKPRKVILHAP---------KNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp CEEEEEESSTTCCSCCCC-CSCCEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred CEEEEEecCCCccccccc-CCCcEEEecccCCcEeeEEEEEC---------CCCEEEEEECCCCCEeccccccccCcccc
Confidence 988776643221000000 1122223444578 6778877 88999999999998876654210
Q ss_pred ecCCCCCce------------------------EEEEEcCCCCeEEEEeCC-----------------------------
Q 040987 550 YEPHRDAGI------------------------SAVAFHPNRRAAVSSSYG----------------------------- 576 (762)
Q Consensus 550 ~~~h~~~~v------------------------~~~~~spd~~~l~~~~~d----------------------------- 576 (762)
.... ...+ ..++++|++.++++...+
T Consensus 364 ~d~~-g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 364 YDKH-GKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp ECTT-SCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cCCC-CceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 0000 0000 257889988888775432
Q ss_pred --------------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE
Q 040987 577 --------------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL 641 (762)
Q Consensus 577 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~ 641 (762)
|.|..||+.+++.+-..+ +...+....++.++.++++++ |+.+++||.++|+.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~------------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE------------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEE------------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecC------------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCce
Confidence 678999998887654331 122344455667888888888 99999999999999
Q ss_pred EEEeccccC-ceeEEEEeCCCCEEEEE
Q 040987 642 VAVIGETLT-PIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 642 ~~~l~~~~~-~v~~~~~s~dg~~l~s~ 667 (762)
+..+....+ ...-+.|..+|+.++..
T Consensus 511 lw~~~~~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 511 LWEAPTGTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred eeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence 988864432 23456677888765554
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.5e-10 Score=114.48 Aligned_cols=275 Identities=9% Similarity=-0.004 Sum_probs=166.7
Q ss_pred cceeEEEEecCCCEEEEEec--CCeEEEEecCCCceeccC-------CCCCCeEEEEeCCCCCeEEEEec-----CCcEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK--EGVLVVWQLDTGKKKFLP-------RIGSPLLYFTESPDPSLSSISCA-----DNQVH 419 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~--dg~i~~wd~~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~-----d~~i~ 419 (762)
..+..++++++|+.+++... ++.+++|.+.+++...++ .+-..+..++++++++++++-.. ++.|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~ 96 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV 96 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence 67899999999998888642 342455555455544222 12347899999999886665433 57899
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE-EEee---cCceEEEEEcCCCCceeeEEeecccccCCC
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGD 495 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 495 (762)
+||+.+++.+..+....... .....+..+++++++..+ ++.. .++.|.+||+.+++....+ ..|....
T Consensus 97 ~~d~~tg~~~~~~~~~~~~~----~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~----~~~~~~~ 168 (343)
T 2qe8_A 97 AWDTLNNQLSRVIYLPPPIT----LSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVL----QGYPGIA 168 (343)
T ss_dssp EEETTTTEEEEEEECCTTTS----CTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEEC----TTCTTTS
T ss_pred EEECCCCeEEEEEECChhhc----ccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEe----cCCCccc
Confidence 99999998877765322100 111356889999865444 4444 5789999999877543322 1110000
Q ss_pred CcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 496 DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 496 ~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.. ...+.++|..+.+.+ .++.++.| ...+..++|+|||+.|+++..
T Consensus 169 --~~---~~~~~~~g~~~~~~~---------~~g~~~~~--------------------~~~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 169 --PE---DIDLVIDGVPVQIGQ---------PDGTVIRP--------------------HLGVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp --CC---SCCCEETTEECBEEC---------TTSCEECC--------------------CCCEEEEEECTTSCEEEEEES
T ss_pred --cc---ccceeECCEEEEecc---------CCCceece--------------------ecccceeEeccCCCEEEEEeC
Confidence 00 034455666665554 34444322 124568999999998888877
Q ss_pred CCcEEEEEcccccccc-ccc-CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCc
Q 040987 576 GGDFKVWICNDELQQK-DLQ-SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTP 651 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~-~~~-~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~ 651 (762)
++. ++|.+....... ... ...+.. ....++......++++++|+++++.. ++.|.+||.++++....... +...
T Consensus 215 ~~~-~l~~~~~~~~~~~~~~~~~~~~~-~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~ 292 (343)
T 2qe8_A 215 HST-SMYRIKSADLSNLQLTDAELGSK-IERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSW 292 (343)
T ss_dssp SCS-EEEEEEHHHHTCTTCCHHHHHTT-CEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCC-eEEEEEHHHhcCCCCChhhhhcc-eEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceec
Confidence 663 455543221100 000 000000 00001223456799999998888876 89999999966765433332 2345
Q ss_pred eeEEEEeCCCCEEEEEEcCCC
Q 040987 652 IMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~ 672 (762)
..+++|.++|+++++.+..+.
T Consensus 293 p~~va~~~~g~l~v~~~~~~~ 313 (343)
T 2qe8_A 293 TDSFNFGSDGYLYFDCNQLHH 313 (343)
T ss_dssp EEEEEECTTSCEEEEECCGGG
T ss_pred CCeeEECCCCcEEEEeCcccc
Confidence 889999999988888765543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-10 Score=129.71 Aligned_cols=196 Identities=11% Similarity=0.044 Sum_probs=126.8
Q ss_pred EEEECCCCCEEEEE-eC-------------CeEEEEEccCchhhhheeeeeeec-cCcCeEEEEEcCCCcEEEEeec---
Q 040987 240 VITISSSGKYFGIR-KQ-------------RKLLIWKVPDVEAERVVMRKITLH-HTKKLTVLAFHPTQRIVAAGDV--- 301 (762)
Q Consensus 240 ~~~~spdg~~la~~-~~-------------~~i~iwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~~~~~--- 301 (762)
.++|+ ||+.|+.+ .+ ..|++|++.+.......+ ..... |...+..+.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v-~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV-FGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE-ESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE-EecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 45788 88877744 33 349999998876431111 11122 3445788999999998875432
Q ss_pred -CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-C---Ce
Q 040987 302 -TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-E---GV 376 (762)
Q Consensus 302 -dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-d---g~ 376 (762)
+..|+++|+.++.. ....+..+....... |+++|..|+..+. + +.
T Consensus 257 ~~~~i~~~d~~~~~~-----------------------------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~ 306 (693)
T 3iuj_A 257 SGNRLYVKDLSQENA-----------------------------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRR 306 (693)
T ss_dssp SCCEEEEEETTSTTC-----------------------------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCE
T ss_pred CCcEEEEEECCCCCC-----------------------------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCE
Confidence 35899999865421 123444555555554 6667766665443 2 67
Q ss_pred EEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCCCCCcccCcee
Q 040987 377 LVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCR 450 (762)
Q Consensus 377 i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 450 (762)
|..+|+.++.. ..+..+...+. .|+++++.|+....++ .|++|++..+ ....+.... .+.+.
T Consensus 307 l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~---------~~~~~ 374 (693)
T 3iuj_A 307 LVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG---------LGSVS 374 (693)
T ss_dssp EEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS---------SSEEE
T ss_pred EEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC---------CceEE
Confidence 99999988764 34444555454 8899999888776544 6889998754 344443211 14667
Q ss_pred eEEEeCCCCEEEEeecC----ceEEEEEcCCCC
Q 040987 451 DIAFNHDGGLVALRAEN----YCIHFYSLLDDR 479 (762)
Q Consensus 451 ~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~ 479 (762)
.+.++++++.++....+ +.++.||+.+++
T Consensus 375 ~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 375 GFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp ECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred eeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 77788888887776655 789999998765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-09 Score=108.50 Aligned_cols=249 Identities=8% Similarity=0.034 Sum_probs=153.7
Q ss_pred CCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEE
Q 040987 404 PDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHF 472 (762)
Q Consensus 404 ~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i 472 (762)
+++++|++.+ .++.|+++|+.+. +..+++....... .........+..+|+| .++++..+ |.|.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~---~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~v 168 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKK---VSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILM 168 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHH---HHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhccc---ccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEE
Confidence 7788877755 4778999999764 6666663100000 0000244567889999 66666555 78999
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc---c---CC----CceeEEEEEEecCCCce
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE---E---GI----GSLVCLKFWVSGTQNKE 542 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~---~---~~----~~d~~i~iwd~~~~~~~ 542 (762)
+|..+.+.+.++...... ......+.|+|+++.++++....+. . .. ....+|.+||+.+++..
T Consensus 169 lD~~T~~v~~~~~~~~~~-------~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~ 241 (462)
T 2ece_A 169 LDHYSFEPLGKWEIDRGD-------QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRI 241 (462)
T ss_dssp ECTTTCCEEEECCSBCTT-------CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEE
T ss_pred EECCCCeEEEEEccCCCC-------ccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEe
Confidence 999999887776532111 1223468889999999888521000 0 00 14679999999987555
Q ss_pred eEEEEEeecCCCCCceEEEEE--cCCCCeEEEEeC------CCcEEEEEcccccccccccCCceeeee---ec-------
Q 040987 543 FTLSTIVYEPHRDAGISAVAF--HPNRRAAVSSSY------GGDFKVWICNDELQQKDLQSSGWSCHA---VG------- 604 (762)
Q Consensus 543 ~~~~~~~~~~h~~~~v~~~~~--spd~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~---~~------- 604 (762)
.++. .+........+.| +|+++++++++. +++|.+|..+.+........ ...... ..
T Consensus 242 ~tI~----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vI-di~~~~v~~~lp~~~~~f 316 (462)
T 2ece_A 242 HSLT----LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVI-EIPAEPLEGNLPEILKPF 316 (462)
T ss_dssp EEEE----SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEE-EECCEECCSSCCGGGGGG
T ss_pred eEEe----cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEE-eCCCcccccccccccccc
Confidence 4443 2210123445555 999998887764 56888777654321111000 000000 00
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC---CeEEEEecccc--------------CceeEEEEeCCCCEEE
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR---NVLVAVIGETL--------------TPIMNMSFVGSSEYLV 665 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~---~~~~~~l~~~~--------------~~v~~~~~s~dg~~l~ 665 (762)
.+.......+.+||||++|.++. .+.|.+||+.. .+++..+.... +.-..++++|||++|+
T Consensus 317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly 396 (462)
T 2ece_A 317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY 396 (462)
T ss_dssp TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence 00024578899999999999986 79999999863 35565553220 1247899999999999
Q ss_pred EEE
Q 040987 666 ATS 668 (762)
Q Consensus 666 s~~ 668 (762)
++.
T Consensus 397 VaN 399 (462)
T 2ece_A 397 VTN 399 (462)
T ss_dssp EEC
T ss_pred EEc
Confidence 998
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-09 Score=108.74 Aligned_cols=228 Identities=14% Similarity=0.015 Sum_probs=148.9
Q ss_pred ceeEEEEecCCCE-EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAY-LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~-l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
....++|+|++.. +++...++.|..||.++++.... .....+.+++++++|+++++. ...|.+||..+++......
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~v~~i~~~~dg~l~v~~--~~gl~~~d~~~g~~~~~~~ 126 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH-ALPFMGSALAKISDSKQLIAS--DDGLFLRDTATGVLTLHAE 126 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE-ECSSCEEEEEEEETTEEEEEE--TTEEEEEETTTCCEEEEEC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE-ECCCcceEEEEeCCCeEEEEE--CCCEEEEECCCCcEEEEee
Confidence 3467899997554 45555678999999988765433 234679999999999877754 3459999998877543322
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.... .....+..++++|+|+++++... .+.|+.++ +++ ...+... ......++|+
T Consensus 127 ~~~~------~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~-~~~~~~~----------~~~~~~i~~s 187 (326)
T 2ghs_A 127 LESD------LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGK-VTKLFAD----------ISIPNSICFS 187 (326)
T ss_dssp SSTT------CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTE-EEEEEEE----------ESSEEEEEEC
T ss_pred CCCC------CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCc-EEEeeCC----------CcccCCeEEc
Confidence 1100 01146789999999997665432 25666666 332 2222111 2236789999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEec--CC-Cce--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSG--TQ-NKE--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~--~~-~~~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
|||+.++.+.. .++.|.+|++. ++ ... ..+.. +... ......++++++|++.++...++.|.+|
T Consensus 188 ~dg~~lyv~~~--------~~~~I~~~d~~~~~Gl~~~~~~~~~~--~~~~-~~~p~gi~~d~~G~lwva~~~~~~v~~~ 256 (326)
T 2ghs_A 188 PDGTTGYFVDT--------KVNRLMRVPLDARTGLPTGKAEVFID--STGI-KGGMDGSVCDAEGHIWNARWGEGAVDRY 256 (326)
T ss_dssp TTSCEEEEEET--------TTCEEEEEEBCTTTCCBSSCCEEEEE--CTTS-SSEEEEEEECTTSCEEEEEETTTEEEEE
T ss_pred CCCCEEEEEEC--------CCCEEEEEEcccccCCcccCceEEEE--CCCC-CCCCCeeEECCCCCEEEEEeCCCEEEEE
Confidence 99998766642 46799999986 44 321 11211 1223 4467789999999888777667889999
Q ss_pred EcccccccccccCCceeeeeecccCCCCeEEEEEc-CCCcEEEEEc
Q 040987 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS-ADGSVLAVAA 627 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~dg~~la~~~ 627 (762)
|.. ++....+ ..+...+++++|+ +|++.|++++
T Consensus 257 d~~-g~~~~~i-----------~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 257 DTD-GNHIARY-----------EVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp CTT-CCEEEEE-----------ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred CCC-CCEEEEE-----------ECCCCCcEEEEEecCCCCEEEEEe
Confidence 984 4433322 1234568999998 8988776554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=127.41 Aligned_cols=305 Identities=9% Similarity=0.040 Sum_probs=195.3
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-----------e-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----------L-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|.++|+.+........ + ..+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 45777788889999999999998543222111 0 11122 4567888889999999999999999887
Q ss_pred ccC-CCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc-CCC--------
Q 040987 433 SGI-KLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ-PGD-------- 495 (762)
Q Consensus 433 ~~~-~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~-------- 495 (762)
... .... ...+. +..+ .++ .+++++ .++.|+.||..+++.+.++........ ...
T Consensus 148 ~~~~~~~~------~~~~~~sP~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~ 219 (689)
T 1yiq_A 148 DTRADHKR------SYTITGAPRV-VNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAA 219 (689)
T ss_dssp ECCSCTTS------CCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHH
T ss_pred cCcCCCCC------CccccCCcEE-ECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccc
Confidence 653 1000 00111 1111 144 444443 368999999999998887653211000 000
Q ss_pred ------------CcceeEEEEEEecCCCeEEEEeeeccccCCCcee-------------------EEEEEEecCCCceeE
Q 040987 496 ------------DVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV-------------------CLKFWVSGTQNKEFT 544 (762)
Q Consensus 496 ------------~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~-------------------~i~iwd~~~~~~~~~ 544 (762)
........++++|++..++.+. .++ .|..+|..+++..+.
T Consensus 220 ~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~---------~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 220 KTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV---------GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp TTCCSSTHHHHCEECCCCSCEEEETTTTEEEEEC---------CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred cccCCceeeecCCCCccccceeEcCCCCEEEEeC---------CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 0001113578899888888887 333 599999999999887
Q ss_pred EEEEeecCCC------CCceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc--CCceeeeee----------
Q 040987 545 LSTIVYEPHR------DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAV---------- 603 (762)
Q Consensus 545 ~~~~~~~~h~------~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~---------- 603 (762)
++. .+|. ...........+|+ .++.++.+|.++++|..+++.+...+ ...|.....
T Consensus 291 ~~~---~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~ 367 (689)
T 1yiq_A 291 YQT---TPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDE 367 (689)
T ss_dssp EES---STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECH
T ss_pred eec---CCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccch
Confidence 753 2220 11122222223565 78889999999999999998764322 112322100
Q ss_pred -----ccc-----------CCCCeEEEEEcCCCcEEEEEc----------------------------------------
Q 040987 604 -----GSY-----------KKKAMTAAAFSADGSVLAVAA---------------------------------------- 627 (762)
Q Consensus 604 -----~~~-----------~~~~i~~~~~s~dg~~la~~~---------------------------------------- 627 (762)
... ....-..++|+|+..++++..
T Consensus 368 ~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~ 447 (689)
T 1yiq_A 368 ENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLL 447 (689)
T ss_dssp HHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHH
T ss_pred hhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCC
Confidence 000 001122478999888877652
Q ss_pred ------CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 628 ------ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 628 ------d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+|.|..||+.+|+.+-.+..+ .+.....++..+.+++.++.|+. |+.||.++|+++|++.....
T Consensus 448 ~~~~~~~g~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~gt~dg~--l~a~D~~tG~~lw~~~~~~~ 517 (689)
T 1yiq_A 448 EMAKSWSGKLIAWDPVKQQAAWEVPYV-TIFNGGTLSTAGNLVFEGSADGR--VIAYAADTGEKLWEQPAASG 517 (689)
T ss_dssp HHHTTCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred CCCCCcceeEEEEECCCCCeEeEccCC-CCccCccceECCCEEEEECCCCc--EEEEECCCCccceeeeCCCC
Confidence 277999999999998887654 34444567778889999999988 99999999999999987643
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-10 Score=124.92 Aligned_cols=328 Identities=10% Similarity=0.039 Sum_probs=194.1
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-cce-eEEEEecCCCEEEE
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEV-SVLIFSSDGAYLYS 370 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~s 370 (762)
+..|++++.++.|..+|..+++.+-......... ...... ..+ ..++. ++..++.
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~g~v~v 126 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRH---------------------RAGEACCDAVNRGVAV--WKGKVYV 126 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGG---------------------GGGGCTTCSCCCCCEE--ETTEEEE
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCcc---------------------ccccccccCCCCccEE--ECCEEEE
Confidence 4467777788999999998887654221100000 000000 000 11222 3457888
Q ss_pred EecCCeEEEEecCCCceeccCCCC---CCeEEEEeCC---CCCeEEEEe------cCCcEEEEEcCCceEEEEEccCCC-
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIG---SPLLYFTESP---DPSLSSISC------ADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~---~~v~~~~~s~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
++.|+.|..+|.++|+.+...... .....+..+| ++ .++++. .++.|..||..+|+.+..+.....
T Consensus 127 ~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~ 205 (689)
T 1yiq_A 127 GVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGD 205 (689)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCC
T ss_pred EccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCC
Confidence 888999999999999985322211 1111111122 44 444443 268999999999999888753210
Q ss_pred CCCC-CC-------------------cccCceeeEEEeCCCCEEEEeecCce-------------------EEEEEcCCC
Q 040987 438 PCPL-PE-------------------EYKGLCRDIAFNHDGGLVALRAENYC-------------------IHFYSLLDD 478 (762)
Q Consensus 438 ~~~~-~~-------------------~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~ 478 (762)
+... .. ........++++|++.++++++.++. |..+|..++
T Consensus 206 p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG 285 (689)
T 1yiq_A 206 PKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTG 285 (689)
T ss_dssp TTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTC
T ss_pred cccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCC
Confidence 0000 00 00011136889999899999888764 999999999
Q ss_pred CceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------
Q 040987 479 RGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------ 549 (762)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------ 549 (762)
+....++.......... ....+.......+|+ .++.++ .++.++++|..+++.+.......
T Consensus 286 ~~~W~~~~~~~d~wd~~-~~~~~~l~d~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 286 EYVWHYQTTPGDAWDYT-ATQHMILAELPIDGKPRKVLMQAP---------KNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp CEEEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred ceeEeeecCCccccccc-CCCCcEEEeeccCCcEEEEEEEEC---------CCCeEEEEECCCCCEeccccccccccccc
Confidence 98877654321100000 011222223334665 677777 88999999999998764332100
Q ss_pred -----------------ecCC----------CCCceEEEEEcCCCCeEEEEeC---------------------------
Q 040987 550 -----------------YEPH----------RDAGISAVAFHPNRRAAVSSSY--------------------------- 575 (762)
Q Consensus 550 -----------------~~~h----------~~~~v~~~~~spd~~~l~~~~~--------------------------- 575 (762)
+... ....-..++|+|+..++++...
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 0000 0001123788998887776532
Q ss_pred ------------------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 576 ------------------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 576 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+|.|..||+.+++.+-..+ . ......-.++..+.++++++ |+.++.||.
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------~-----~~~~~~g~~~tagglvf~gt~dg~l~a~D~ 503 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-------Y-----VTIFNGGTLSTAGNLVFEGSADGRVIAYAA 503 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-------E-----SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-------C-----CCCccCccceECCCEEEEECCCCcEEEEEC
Confidence 3678899998887654332 1 12223335566788999998 999999999
Q ss_pred CCCeEEEEeccccCc-eeEEEEeCCCCEEEE
Q 040987 637 DRNVLVAVIGETLTP-IMNMSFVGSSEYLVA 666 (762)
Q Consensus 637 ~~~~~~~~l~~~~~~-v~~~~~s~dg~~l~s 666 (762)
++|+++..++...+. ..-+.|+.||+..++
T Consensus 504 ~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 504 DTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999999887654332 245778889885544
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.1e-11 Score=119.06 Aligned_cols=174 Identities=9% Similarity=0.015 Sum_probs=131.1
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc--------eee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG--------ISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~--------~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..+..+++++...++++++.++ +.+|++..... ... .... + .. |+.++| |+++|+++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~---l------p~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE---I------PD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE---C------TT-EEEEEE--ETTEEEEE-
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEee---C------CC-eeEEEE--CCCEEEEE-
Confidence 3678999999999999998886 66698754320 000 1111 1 44 999999 99999998
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCc
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSG 597 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 597 (762)
.++.|++||+.+....... ..| ...+.++.+.+.. +++++.||.+.+||+.++....
T Consensus 104 ---------~~~~l~v~dv~sl~~~~~~-----~~~-~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~------ 160 (388)
T 1xip_A 104 ---------TRNALYSLDLEELSEFRTV-----TSF-EKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ------ 160 (388)
T ss_dssp ---------ESSEEEEEESSSTTCEEEE-----EEC-SSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE------
T ss_pred ---------cCCcEEEEEchhhhccCcc-----cee-ecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc------
Confidence 3479999999887654433 234 5678887777653 8888999999999998766432
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeE--EEEe------c---cccCceeEEEEeCCCCEEE
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVL--VAVI------G---ETLTPIMNMSFVGSSEYLV 665 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~--~~~l------~---~~~~~v~~~~~s~dg~~l~ 665 (762)
+...|++++|||+| ++.|. ||++++|+...++. .+++ . +|...|.++.|.+++.+|+
T Consensus 161 ---------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv 229 (388)
T 1xip_A 161 ---------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLA 229 (388)
T ss_dssp ---------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEE
T ss_pred ---------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEE
Confidence 24589999999999 55565 99999999988875 5556 2 3677899999999999998
Q ss_pred EEE
Q 040987 666 ATS 668 (762)
Q Consensus 666 s~~ 668 (762)
+-+
T Consensus 230 ~y~ 232 (388)
T 1xip_A 230 VFG 232 (388)
T ss_dssp EEE
T ss_pred EEc
Confidence 754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-09 Score=111.22 Aligned_cols=318 Identities=9% Similarity=0.012 Sum_probs=185.2
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
+..+++++.++.|..+|..+++..-....... ..........+... ...++..++.++
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~---------------------~~~~~~~~~~~~~~-~~~~~~~v~v~~ 110 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEK---------------------DGWFSKEPALLSGG-VTVSGGHVYIGS 110 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC------------------------CCSCCCCCEEEE-EEEETTEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccc---------------------cccccccCcccccC-ceEeCCEEEEEc
Confidence 55677788889999999987765421100000 00000001122221 122455788888
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeE-EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLL-YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.++.|..+|.++++..........+. .... .+..+++++.++.+..+|..+++.+............ .....
T Consensus 111 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~-----~~~~~ 183 (376)
T 3q7m_A 111 EKAQVYALNTSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSL-----RGESA 183 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceee-----cCCCC
Confidence 89999999999998754332222211 1111 2457778888999999999999988877643211000 00112
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec--CCCeEEEEeeeccccCCCcee
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ--DGSLMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~~l~~~~~~~~~~~~~~d~ 529 (762)
.... +..+++++.++.+..+|..+++............... ...+..+...| .+..+.+++ .++
T Consensus 184 ~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~v~~~~---------~~g 249 (376)
T 3q7m_A 184 PTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTE---IDRLSDVDTTPVVVNGVVFALA---------YNG 249 (376)
T ss_dssp CEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC--------------CCCCCCEEETTEEEEEC---------TTS
T ss_pred cEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcc---cccccccCCCcEEECCEEEEEe---------cCc
Confidence 2222 3467888889999999999998776654321100000 00000000111 234555555 667
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCC
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKK 609 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (762)
.+..+|..+++..+... ......+.. ++..++.++.++.+..+|..+++..-..+ . ....
T Consensus 250 ~l~~~d~~tG~~~w~~~--------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~-------~---~~~~ 309 (376)
T 3q7m_A 250 NLTALDLRSGQIMWKRE--------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQS-------D---LLHR 309 (376)
T ss_dssp CEEEEETTTCCEEEEEC--------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEEC-------T---TTTS
T ss_pred EEEEEECCCCcEEeecc--------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeec-------c---cCCC
Confidence 89999999998776543 123344444 35677888889999999999887643321 0 0111
Q ss_pred CeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeE-EEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 610 AMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMN-MSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 610 ~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~-~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
.+..+.. .+..|++++ +|.|+++|..+|+.+.........+.. ... .+..|+.++.+|. |+.||
T Consensus 310 ~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~--l~~~~ 375 (376)
T 3q7m_A 310 LLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGT--VYSIT 375 (376)
T ss_dssp CCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSC--EEEEE
T ss_pred cccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCE--EEEEe
Confidence 2222232 245666676 899999999999988777653333332 222 2457888888887 98886
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.5e-06 Score=92.51 Aligned_cols=450 Identities=12% Similarity=0.051 Sum_probs=247.8
Q ss_pred EEEEEeCCEEEEEEcccce-EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccce
Q 040987 87 RLLVCTSNTVSIFSTSTGL-QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSI 165 (762)
Q Consensus 87 ~la~~~~~~i~iwd~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v 165 (762)
+|..+..+.|++.|+.... ....+......+..++|++.+. .+.++=...+.|..+++........+
T Consensus 11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~------~ly~sD~~~~~I~r~~~~g~~~~~~v------ 78 (619)
T 3s94_A 11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHG------LIYWSDVSEEAIKRTEFNKTESVQNV------ 78 (619)
T ss_dssp CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTT------EEEEEETTTTEEEEEEC-----CEEE------
T ss_pred eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCC------EEEEEECCCCeEEEEEccCCCceEEE------
Confidence 5666667889999987553 2222333445688999999763 33444444567777776543110100
Q ss_pred EEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECC
Q 040987 166 FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISS 245 (762)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~sp 245 (762)
.......+..+++.+
T Consensus 79 -----------------------------------------------------------------~~~~~~~P~GlAvD~ 93 (619)
T 3s94_A 79 -----------------------------------------------------------------VVSGLLSPDGLACDW 93 (619)
T ss_dssp -----------------------------------------------------------------ECSSCSCEEEEEEET
T ss_pred -----------------------------------------------------------------EeCCCCCcCeEEEEe
Confidence 001123567889988
Q ss_pred CCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec--CCeEEEEeccCCceeecccc
Q 040987 246 SGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV--TGRILIWRGFGDRTFATNDN 321 (762)
Q Consensus 246 dg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~ 321 (762)
.++.|..+ ..+.|.+.++...... ............|++.|.+.+|..... .+.|...++.+.....
T Consensus 94 ~~~~ly~~d~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~---- 164 (619)
T 3s94_A 94 LGEKLYWTDSETNRIEVSNLDGSLRK-----VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI---- 164 (619)
T ss_dssp TTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE----
T ss_pred cCCEEEEEeCCCCEEEEEECCCCCEE-----EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE----
Confidence 77766544 4688999998865432 222244456789999997666655542 3566666665432111
Q ss_pred cccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCC-CCCCeEE
Q 040987 322 KMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPR-IGSPLLY 399 (762)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~-~~~~v~~ 399 (762)
.....-.....++++++++.|+.+.. .+.|...|++......+.. .......
T Consensus 165 --------------------------l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g 218 (619)
T 3s94_A 165 --------------------------IINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA 218 (619)
T ss_dssp --------------------------EECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCC
T ss_pred --------------------------EEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE
Confidence 11112335678999998777776653 4679999987655433322 1222345
Q ss_pred EEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCC-CCC-------------CCCCc-ccCceeeEEE---------
Q 040987 400 FTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIK-LPC-------------PLPEE-YKGLCRDIAF--------- 454 (762)
Q Consensus 400 ~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~-~~~-------------~~~~~-~~~~v~~~~~--------- 454 (762)
+++..+ .++.+. ..+.|...|..+++....+.... .+. ..+.. ..+....+++
T Consensus 219 i~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~ 296 (619)
T 3s94_A 219 LTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQ 296 (619)
T ss_dssp EEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEE
T ss_pred EEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCce
Confidence 666554 455443 46789999987765444332211 000 00000 0111222222
Q ss_pred --eC-------CC--------CEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 455 --NH-------DG--------GLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 455 --s~-------~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
.| |+ .+|+.+ ..+.|+..++........ .....+ -..+..++|.+.+..|..++
T Consensus 297 C~C~~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~-~~~~~~-------l~~~~~ld~d~~~~~ly~sD 367 (619)
T 3s94_A 297 CACPTGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDI-VLQLED-------IRHAIAIDYDPVEGYIYWTD 367 (619)
T ss_dssp EECCTTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCE-ECCCSC-------CSSEEEEEEETTTTEEEEEE
T ss_pred EeCCchheecccCcccCCCCceEEEEE-cccceEEEecCCCcccee-EEeccc-------cCccEEEEEEcCCCeEEEEe
Confidence 11 11 123332 334566666654432111 111110 23467899999777666665
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCC
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
. ..+.|+.+++........+ ... ......+++.+.++ +.++-+..+.|.+.++.........
T Consensus 368 ~--------~~~~I~r~~~~g~~~~~v~-----~~~-~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~--- 430 (619)
T 3s94_A 368 D--------EVRAIRRSFIDGSGSQFVV-----TAQ-IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILI--- 430 (619)
T ss_dssp T--------TTTEEEEEETTSCSCEEEE-----CSS-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---
T ss_pred C--------CCCeEEEEEcCCCccEEEE-----ECC-CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEE---
Confidence 3 5678888888765433222 111 34567889987544 5555555678999988755322211
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEc---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAA---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
...-....++++.|...+|..+. ...|...+++...........-.....+++++++..|+.+.... +
T Consensus 431 --------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~-~ 501 (619)
T 3s94_A 431 --------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKT-D 501 (619)
T ss_dssp --------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT-T
T ss_pred --------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCC-C
Confidence 12245678999999755555543 36788888774433323333345578899999888888886544 3
Q ss_pred eEEEEECCCCce
Q 040987 674 QLSVWNMSKLSI 685 (762)
Q Consensus 674 ~v~vwd~~~~~~ 685 (762)
.|...+++....
T Consensus 502 ~I~~~~~dG~~~ 513 (619)
T 3s94_A 502 KIEVMNTDGTGR 513 (619)
T ss_dssp EEEEEESSSCCC
T ss_pred EEEEEecCCCce
Confidence 588888865543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-09 Score=107.37 Aligned_cols=280 Identities=10% Similarity=-0.003 Sum_probs=174.2
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCC----------CCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRI----------GSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..++.++.++.|..+|.++++....... ...+.. ....++..+++++.++.+..+|..+++.+.....
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 131 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV 131 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC
Confidence 55788888889999999999987533222 222322 2223456778888999999999999998877654
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMS 514 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~ 514 (762)
... ........ +..+++++.++.|..+|..+++.+........... .......... +..++
T Consensus 132 ~~~----------~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~--~~~v~ 192 (376)
T 3q7m_A 132 AGE----------ALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLS-----LRGESAPTTA--FGAAV 192 (376)
T ss_dssp SSC----------CCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC----------CCCCCCEEE--TTEEE
T ss_pred CCc----------eEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCcee-----ecCCCCcEEE--CCEEE
Confidence 321 11122222 34778888899999999999988776654211100 0000111122 34566
Q ss_pred EEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC-CCceEEEEEcC--CCCeEEEEeCCCcEEEEEcccccccc
Q 040987 515 TVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-DAGISAVAFHP--NRRAAVSSSYGGDFKVWICNDELQQK 591 (762)
Q Consensus 515 ~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-~~~v~~~~~sp--d~~~l~~~~~dg~i~iwd~~~~~~~~ 591 (762)
++. .++.+..+|..+++..+........+.. ...+..+...| .+..++.++.++.+..+|..+++..-
T Consensus 193 ~g~---------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w 263 (376)
T 3q7m_A 193 VGG---------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMW 263 (376)
T ss_dssp ECC---------TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEE
T ss_pred EEc---------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEe
Confidence 665 6789999999999887765421000000 00000011111 24567778889999999999887654
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEecc-ccCceeEEEEeCCCCEEEEEEc
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGE-TLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~-~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
... ......+.. ++..|.+++ ++.|..+|..+|+.+-.... ....+..... .+..|+.++.
T Consensus 264 ~~~-------------~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~ 326 (376)
T 3q7m_A 264 KRE-------------LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDS 326 (376)
T ss_dssp EEC-------------CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred ecc-------------CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence 331 122334443 345565555 89999999999988766642 2222333333 2467888888
Q ss_pred CCCCeEEEEECCCCceeeEEEEe
Q 040987 670 GSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 670 d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+|. |.++|..+|++++.+...
T Consensus 327 ~g~--l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 327 EGY--LHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp TSE--EEEEETTTCCEEEEEECC
T ss_pred CCe--EEEEECCCCcEEEEEecC
Confidence 887 999999999999987753
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=115.22 Aligned_cols=300 Identities=11% Similarity=0.000 Sum_probs=185.8
Q ss_pred CceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEE
Q 040987 78 PPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLK 157 (762)
Q Consensus 78 ~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~ 157 (762)
++.+..+|.+.+...++.|..|| .+++.+..+..+...+.++...+++ .+ +.++.+ |..+|. +|+.+.
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-------~l-~v~t~~--l~~~d~-~g~~~~ 91 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDG-------TI-YFGSDK--VYAINP-DGTEKW 91 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTT-------EE-CCSSCE--EEEECC-CGGGGG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCC-------cE-EEecCc--EEEECC-CCcEEE
Confidence 47777888665544478899999 8999887776666667888888888 32 344444 888886 665443
Q ss_pred EEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCC
Q 040987 158 TIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKE 237 (762)
Q Consensus 158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~ 237 (762)
.+......... .++. ++.. ..++.++.|..+|.. ++... ........
T Consensus 92 ~~~~~~~~~~~-------------------~~~~--~~~l----------~v~t~~~~l~~~d~~-g~~~~-~~~~~~~~ 138 (330)
T 3hxj_A 92 RFDTKKAIVSD-------------------FTIF--EDIL----------YVTSMDGHLYAINTD-GTEKW-RFKTKKAI 138 (330)
T ss_dssp GSCC-----CC-------------------EEEE--TTEE----------EEECTTSEEEEECTT-SCEEE-EEECSSCC
T ss_pred EEECCCCcccC-------------------ceEE--CCEE----------EEEecCCEEEEEcCC-CCEEE-EEcCCCce
Confidence 32222111000 0000 0000 335678889999988 66652 23334455
Q ss_pred ceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 238 PQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 238 v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
+.++...++|.+++++.++.|..+|.. ++.. .........+.++.+.+++...+ ++ +.|..+| .+++...
T Consensus 139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~~-----~~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~ 208 (330)
T 3hxj_A 139 YATPIVSEDGTIYVGSNDNYLYAINPD-GTEK-----WRFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKW 208 (330)
T ss_dssp CSCCEECTTSCEEEECTTSEEEEECTT-SCEE-----EEEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEE
T ss_pred eeeeEEcCCCEEEEEcCCCEEEEECCC-CCEe-----EEEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEE
Confidence 677888889998777778999999988 5532 22223345667777877887544 44 7799999 4443221
Q ss_pred cccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSP 396 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~ 396 (762)
........+.++...++|. |..++.++.+..+|.. ++.. ........
T Consensus 209 ------------------------------~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~-g~~~~~~~~~~~~ 256 (330)
T 3hxj_A 209 ------------------------------NFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPD-GTEKWRFKTGKRI 256 (330)
T ss_dssp ------------------------------EECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTT-SCEEEEEECSSCC
T ss_pred ------------------------------EEccCCcceeceEECCCCe-EEEEcCCCeEEEECCC-CCEeEEeeCCCCc
Confidence 1122234567778887775 5556667888888754 4433 22222222
Q ss_pred eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcC
Q 040987 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
+..+...+++ .|.+++.++.+..+|. +++....+.... ..+.++...++++ |.+++.+|.+++....
T Consensus 257 ~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~----------~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 257 ESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGS----------WIIATPVIDENGT-IYFGTRNGKFYALFNL 323 (330)
T ss_dssp CSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSS----------CCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred cccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCC----------ccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence 3344555555 5666778889999996 677666654322 4556777777776 5668899999887765
Q ss_pred C
Q 040987 477 D 477 (762)
Q Consensus 477 ~ 477 (762)
.
T Consensus 324 ~ 324 (330)
T 3hxj_A 324 E 324 (330)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-05 Score=86.90 Aligned_cols=471 Identities=10% Similarity=-0.000 Sum_probs=251.7
Q ss_pred CCeEEEEecCCcc--eeeeecCcccccCCceeecCCCEEEEEe--CCEEEEEEcccceE-EeeecCCccceeEEEEeCCC
Q 040987 52 SGLCRTAEYPAVN--SKMIRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQ-ISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 52 ~g~i~~~~~~~~~--~~~~~~h~~~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~-~~~l~~h~~~V~~v~~s~~~ 126 (762)
...|+..++.... .......-.... +++|++.+..|..+. .+.|..++++.... ...+.........+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~-~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAA-AVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEE-EEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceE-EEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 4778888887542 222332333344 499999888888777 48999999865532 22333333568899999966
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccC
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKE 206 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (762)
. .+.++-...+.|.+.++.... ...+.
T Consensus 96 ~------~ly~~d~~~~~I~v~~~dG~~-~~~l~---------------------------------------------- 122 (619)
T 3s94_A 96 E------KLYWTDSETNRIEVSNLDGSL-RKVLF---------------------------------------------- 122 (619)
T ss_dssp T------EEEEEETTTTEEEEEETTSCS-CEEEE----------------------------------------------
T ss_pred C------EEEEEeCCCCEEEEEECCCCC-EEEEE----------------------------------------------
Confidence 3 455566667888888876432 11111
Q ss_pred CCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 207 PRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 207 ~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
...-..+..|++.|.+.+|..++ ...|...+++..... .+....-..
T Consensus 123 -------------------------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~-----~l~~~~~~~ 172 (619)
T 3s94_A 123 -------------------------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF-----IIINSEIYW 172 (619)
T ss_dssp -------------------------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----EEECSSCSS
T ss_pred -------------------------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE-----EEEeCCCCC
Confidence 01123456788888766655332 457777777654432 222233456
Q ss_pred eEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 284 LTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+.++++++++.|..+. ..+.|...++.+..... ...+.......+++.
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~------------------------------~~~~~~~~P~gi~~~ 222 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQA------------------------------VVKGSLPHPFALTLF 222 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------------------------------------CCCEEES
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEE------------------------------EEeCCCCCceEEEEe
Confidence 78999999776666553 45678888876543211 001011112345554
Q ss_pred cCCCEEEEE-ecCCeEEEEecCCCceecc-CC------------------CCC--------------------CeEEEE-
Q 040987 363 SDGAYLYSG-GKEGVLVVWQLDTGKKKFL-PR------------------IGS--------------------PLLYFT- 401 (762)
Q Consensus 363 ~~g~~l~s~-~~dg~i~~wd~~~~~~~~~-~~------------------~~~--------------------~v~~~~- 401 (762)
.+ .|+.+ ...+.|...|..+++.... .. ... ...|.+
T Consensus 223 ~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~ 300 (619)
T 3s94_A 223 ED--ILYWTDWSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACP 300 (619)
T ss_dssp SS--EEEEECTTTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECC
T ss_pred CC--EEEEecCCCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCC
Confidence 33 34433 3445677666655542110 00 000 011111
Q ss_pred ----eCCCC--------CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCc
Q 040987 402 ----ESPDP--------SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENY 468 (762)
Q Consensus 402 ----~s~~~--------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg 468 (762)
+.+|+ .+|+.+ ..+.|+..++.......... +...-..+.+++|++.+..|..+ ...+
T Consensus 301 ~g~~l~~d~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~--------~~~~l~~~~~ld~d~~~~~ly~sD~~~~ 371 (619)
T 3s94_A 301 TGVKLLENGKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVL--------QLEDIRHAIAIDYDPVEGYIYWTDDEVR 371 (619)
T ss_dssp TTCCBCTTSSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEEC--------CCSCCSSEEEEEEETTTTEEEEEETTTT
T ss_pred chheecccCcccCCCCceEEEEE-cccceEEEecCCCccceeEE--------eccccCccEEEEEEcCCCeEEEEeCCCC
Confidence 01111 112222 33345555554322110000 00001356789999865555554 4567
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
.|+.+++...... .+... . ...+..+++.+.+..|..+.. ..+.|.+.++...... .+.
T Consensus 372 ~I~r~~~~g~~~~-~v~~~-~--------~~~p~GlAvD~~~~~lY~tD~--------~~~~I~v~~~~G~~~~-~l~-- 430 (619)
T 3s94_A 372 AIRRSFIDGSGSQ-FVVTA-Q--------IAHPDGIAVDWVARNLYWTDT--------GTDRIEVTRLNGTMRK-ILI-- 430 (619)
T ss_dssp EEEEEETTSCSCE-EEECS-S--------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCE-EEE--
T ss_pred eEEEEEcCCCccE-EEEEC-C--------CCCcCceEEecccCcEEEEeC--------CCCcEEEEeCCCCeEE-EEE--
Confidence 8888888654322 22111 0 234668899986666666542 6678999998865432 221
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
... -....++++.|....|+.+.. ...|...+++........ ...-...+.++++++++.|..+
T Consensus 431 --~~~-l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~-----------~~~l~~P~GlalD~~~~~LY~a 496 (619)
T 3s94_A 431 --SED-LEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLV-----------NTSLGWPNGLALDYDEGKIYWG 496 (619)
T ss_dssp --CTT-CCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEE
T ss_pred --ECC-CCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEE-----------eCCCCCCeeeEEcccCCEEEEE
Confidence 222 456789999997445554442 356666666543322111 1224567899999988888777
Q ss_pred c--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCce
Q 040987 627 A--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSI 685 (762)
Q Consensus 627 ~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~ 685 (762)
. .+.|..++++.......+........+++...+ +|+.+.... ..|..-|..+|..
T Consensus 497 D~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~--~ly~tD~~~-~~I~~~~k~~g~~ 554 (619)
T 3s94_A 497 DAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD--YVYWTDWQR-RSIERVHKRSAER 554 (619)
T ss_dssp ETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT--EEEEECTTS-SCEEEEESSSCCE
T ss_pred ECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC--EEEEeecCC-CeEEEEEcCCCce
Confidence 5 688999998755333222222222345666543 666665433 2488888888843
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-08 Score=99.58 Aligned_cols=240 Identities=12% Similarity=0.059 Sum_probs=148.9
Q ss_pred cCCCEEEEE-ecCCeEEEEecCCC----ceeccC-------CCC-CCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 363 SDGAYLYSG-GKEGVLVVWQLDTG----KKKFLP-------RIG-SPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 363 ~~g~~l~s~-~~dg~i~~wd~~~~----~~~~~~-------~~~-~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
+++++|+.. ..++.|+++|+.+. +..... ..+ .....+..+|+| .++++..+ +.+.++|.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~ 171 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH 171 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence 778777764 45688999999755 222211 111 234567788999 65555444 68999999
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-------------------cCceEEEEEcCCCCceeeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-------------------ENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-------------------~dg~i~i~d~~~~~~~~~~ 484 (762)
.+++.+.++.....+. ..-..+.|+|+++.+++.. ...+|.+||+.+++...++
T Consensus 172 ~T~~v~~~~~~~~~~~-------~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI 244 (462)
T 2ece_A 172 YSFEPLGKWEIDRGDQ-------YLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL 244 (462)
T ss_dssp TTCCEEEECCSBCTTC-------CCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred CCCeEEEEEccCCCCc-------cccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence 9999999886432211 2335688999999888874 3689999999987666665
Q ss_pred EeecccccCCCCcceeEEEEEE--ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC--------
Q 040987 485 QVCERNHQPGDDVTVVVTLVAL--SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR-------- 554 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~--sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~-------- 554 (762)
..... ......+.| +|+++++.+++.-.. ...+++|.+|..+.+.. ...+........
T Consensus 245 ~vg~~--------g~~P~~i~f~~~Pdg~~aYV~~e~~~---~~Lss~V~v~~~d~g~~-~~~~vIdi~~~~v~~~lp~~ 312 (462)
T 2ece_A 245 TLGEE--------NRMALELRPLHDPTKLMGFINMVVSL---KDLSSSIWLWFYEDGKW-NAEKVIEIPAEPLEGNLPEI 312 (462)
T ss_dssp ESCTT--------EEEEEEEEECSSTTCCEEEEEEEEET---TTCCEEEEEEEEETTEE-EEEEEEEECCEECCSSCCGG
T ss_pred ecCCC--------CCccceeEeeECCCCCEEEEEEeeec---cCCCceEEEEEecCCce-eEEEEEeCCCcccccccccc
Confidence 54211 234556656 999999888872000 00245787777665321 111110000000
Q ss_pred -------CCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeec-----------ccCCCCeEEEE
Q 040987 555 -------DAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVG-----------SYKKKAMTAAA 615 (762)
Q Consensus 555 -------~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~ 615 (762)
......+.+||||++|.++.. .+.|.+||+.......... ..... ..-......++
T Consensus 313 ~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~-----~I~tGG~~~~~~~~~G~~~~ggPr~~~ 387 (462)
T 2ece_A 313 LKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTG-----KVKLGGIFHRADHPAGHKLTGAPQMLE 387 (462)
T ss_dssp GGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEE-----EEECBTTTTCBCCTTSCCCCSCCCCEE
T ss_pred ccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-----EEEeCCeeccccccccccCCCCCCEEE
Confidence 134678999999999988775 5789999986432211110 00111 00012357899
Q ss_pred EcCCCcEEEEEc
Q 040987 616 FSADGSVLAVAA 627 (762)
Q Consensus 616 ~s~dg~~la~~~ 627 (762)
+||||++|.+++
T Consensus 388 lSpDGk~LyVaN 399 (462)
T 2ece_A 388 ISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSSEEEEEC
T ss_pred EcCCCCEEEEEc
Confidence 999999998875
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-10 Score=119.61 Aligned_cols=279 Identities=10% Similarity=-0.013 Sum_probs=166.0
Q ss_pred CCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE-e-cCCCEE
Q 040987 292 TQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF-S-SDGAYL 368 (762)
Q Consensus 292 ~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-s-~~g~~l 368 (762)
||++|..... ++.|.+.|+.+.+.... + .+. ....+..+++ + |+++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~i---------------------------i-~ip-~g~~phg~~~~~~p~~~~v 150 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAI---------------------------L-EIP-NAKGIHGLRPQKWPRSNYV 150 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEE---------------------------E-ECS-SCCSEEEEEECCSSBCSEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeE---------------------------E-eCC-CCCCCcceeeeecCCCcEE
Confidence 8888887655 56799999987754320 1 111 1234667887 5 899999
Q ss_pred EEEe------------------cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCc-EEEEEcCCce--
Q 040987 369 YSGG------------------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQ-VHLLKMPSME-- 427 (762)
Q Consensus 369 ~s~~------------------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~-i~i~d~~~~~-- 427 (762)
+.++ .++.+.+.|.++.+.......+.....++.+|||+++++.+.+.. ....+..+.+
T Consensus 151 ~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~ 230 (595)
T 1fwx_A 151 FCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEM 230 (595)
T ss_dssp EEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred EEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhcccccc
Confidence 8884 246799999999887654444335567889999999999886531 1111111100
Q ss_pred -EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC--CCc-eeeEEeecccccCCCCcceeEEE
Q 040987 428 -IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD--DRG-ISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 428 -~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.+..+... ....+.++|++... +.|.+.|..+ ++. +..+.... ...+
T Consensus 231 d~v~V~~~~--------------~~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ipvg~-----------~PhG 281 (595)
T 1fwx_A 231 DHIVVFNIA--------------EIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIAN-----------NPHG 281 (595)
T ss_dssp EEEEEEEHH--------------HHHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEEEES-----------SCCC
T ss_pred ceEEEeecc--------------ceeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEecCC-----------CceE
Confidence 01111100 00113345555443 4499999998 554 45555432 3568
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
+.++|||+++++++. .+.+|.++|+.+.+.. ...... ..- ......++|+|+|...++...
T Consensus 282 v~~sPDGk~v~V~~~--------~s~~VsVid~~~~~~~~~~~l~~~~~v~~~--v~v-G~gP~h~aF~~dG~aY~t~~l 350 (595)
T 1fwx_A 282 CNMAPDKKHLCVAGK--------LSPTVTVLDVTRFDAVFYENADPRSAVVAE--PEL-GLGPLHTAFDGRGNAYTSLFL 350 (595)
T ss_dssp EEECTTSSEEEEECT--------TSSBEEEEEGGGHHHHHHSCCCGGGGEEEC--CBC-CSCEEEEEECTTSEEEEEETT
T ss_pred EEEcCCCCEEEEeCC--------CCCeEEEEECcccccccccccCcccceEEE--cCC-CCCcceEEECCCCeEEEEEec
Confidence 999999999998874 7789999999965310 001000 011 346788999999954556667
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccC-----CCCeEEEEEcCCCcEEEEEc--C-CeE-----------EEEeC
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYK-----KKAMTAAAFSADGSVLAVAA--E-TVI-----------TLWDP 636 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~~s~dg~~la~~~--d-~~i-----------~iwd~ 636 (762)
|+.|.+||+........-+ ...........| ...-..+.++|||++|++.+ . .++ .++|+
T Consensus 351 dsqV~kwdi~~a~~~~~g~-~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~di 429 (595)
T 1fwx_A 351 DSQVVKWNIEDAIRAYAGE-KVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDI 429 (595)
T ss_dssp TTEEEEEEHHHHHHHHHTC-SCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEEC
T ss_pred CCcEEEEEhhHhhhhhccc-ccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEc
Confidence 8999999998732110000 000011111111 11112345689999999985 2 334 89999
Q ss_pred CCCe
Q 040987 637 DRNV 640 (762)
Q Consensus 637 ~~~~ 640 (762)
..++
T Consensus 430 s~~~ 433 (595)
T 1fwx_A 430 SGDK 433 (595)
T ss_dssp SSSS
T ss_pred CCCc
Confidence 7654
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-09 Score=109.86 Aligned_cols=319 Identities=7% Similarity=-0.055 Sum_probs=179.9
Q ss_pred EcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccce-EEEeecccccCCc
Q 040987 100 STSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSI-FSMVIPSLLRQPA 178 (762)
Q Consensus 100 d~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~ 178 (762)
|.++++++-++..+.....+..+..++ .|+.++.++.|..|| .+++.+..+.....+ .++.+
T Consensus 5 ~~~~g~~~W~~~~~~~~~~~~~~d~~g--------~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~-------- 67 (330)
T 3hxj_A 5 GVNDCKIKWEFLIGNSIDSSPILAKNG--------TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI-------- 67 (330)
T ss_dssp -------CCTTTSCEEECCCCEECTTS--------CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--------
T ss_pred ccCCceEEEEEeCCCCcccCceEccCC--------eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--------
Confidence 344555554444444434455566666 445677888999999 888876654433322 22211
Q ss_pred ccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeE
Q 040987 179 QSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKL 258 (762)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i 258 (762)
..++. . ..++.+ |..+|. +++....... .........+. ++.+.+++.++.+
T Consensus 68 ~~~g~---------------------l--~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~-~~~l~v~t~~~~l 119 (330)
T 3hxj_A 68 GKDGT---------------------I--YFGSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF-EDILYVTSMDGHL 119 (330)
T ss_dssp TTTTE---------------------E--CCSSCE--EEEECC-CGGGGGGSCC------CCEEEE-TTEEEEECTTSEE
T ss_pred ecCCc---------------------E--EEecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE-CCEEEEEecCCEE
Confidence 01111 0 334444 888886 6665522221 12222233333 5655556668999
Q ss_pred EEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcc
Q 040987 259 LIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR 338 (762)
Q Consensus 259 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (762)
..+|.. ++.. .....+...+.++...+++. |..++.++.|..+|.. ++...
T Consensus 120 ~~~d~~-g~~~-----~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~--------------------- 170 (330)
T 3hxj_A 120 YAINTD-GTEK-----WRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKW--------------------- 170 (330)
T ss_dssp EEECTT-SCEE-----EEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEE---------------------
T ss_pred EEEcCC-CCEE-----EEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeE---------------------
Confidence 999988 5432 22223344566677777776 5567778899999987 43321
Q ss_pred cCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCc
Q 040987 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQ 417 (762)
Q Consensus 339 ~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~ 417 (762)
.+......+.++...+++...+ ++ +.|..+| .+++... .......+.++...++|. +.+++.++.
T Consensus 171 ---------~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~g 236 (330)
T 3hxj_A 171 ---------RFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGH 236 (330)
T ss_dssp ---------EEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTE
T ss_pred ---------EEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCe
Confidence 2222233456667777776544 44 7899999 6666543 233335577778887775 555667888
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
+..++. +++.+..+.... ..+..+.+.+++ .|.+++.+|.|..+|. +++........
T Consensus 237 l~~~~~-~g~~~~~~~~~~----------~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~---------- 293 (330)
T 3hxj_A 237 LYAINP-DGTEKWRFKTGK----------RIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETG---------- 293 (330)
T ss_dssp EEEECT-TSCEEEEEECSS----------CCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECS----------
T ss_pred EEEECC-CCCEeEEeeCCC----------CccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcC----------
Confidence 888874 466655554332 223445566565 4667778888999996 56555443321
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
...+.++...++|++.+. + .+|.+++...+..
T Consensus 294 ~~~~~~~~~d~~g~l~~g-t---------~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 294 SWIIATPVIDENGTIYFG-T---------RNGKFYALFNLEH 325 (330)
T ss_dssp SCCCSCCEECTTCCEEEE-C---------TTSCEEEEEC---
T ss_pred CccccceEEcCCCEEEEE-c---------CCCeEEEEecccc
Confidence 233556677778876554 4 6677877765543
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-08 Score=110.37 Aligned_cols=311 Identities=10% Similarity=0.060 Sum_probs=190.5
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC-----------e-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP-----------L-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~-----------v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
+..++.++.++.|+.+|..+|+.+........ + ..+++ ++..+++++.++.+..+|..+|+.+..+
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 44677777889999999999988543222111 0 11122 3567888888999999999999999887
Q ss_pred ccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeeccccc-CCC---------
Q 040987 433 SGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ-PGD--------- 495 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~--------- 495 (762)
....... ...+. ...+. ++ .++++.. +|.|+.+|..+++.+.++........ ...
T Consensus 144 ~~~~~~~------~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~ 215 (668)
T 1kv9_A 144 QTTDPAK------PYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAK 215 (668)
T ss_dssp ECSCTTS------SCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHT
T ss_pred ccCCCCC------cceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccc
Confidence 6532110 01111 11121 33 4555543 58999999999998887754211000 000
Q ss_pred -----------CcceeEEEEEEecCCCeEEEEeeeccc-----------cCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 496 -----------DVTVVVTLVALSQDGSLMSTVDIKLAE-----------EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 496 -----------~~~~~v~~~~~sp~g~~l~~~~~~~~~-----------~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
........++++|+...++.+..+... +.. ..+.|..+|..+++..+..+. .+|
T Consensus 216 ~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l-~~~~v~AlD~~tG~~~W~~~~---~~~ 291 (668)
T 1kv9_A 216 TWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNL-YLSSILAIRPDTGKLAWHYQV---TPG 291 (668)
T ss_dssp TCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCT-TTTEEEEECTTTCCEEEEEES---STT
T ss_pred cCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCce-eeeeEEEEcCCCCceeeEeec---CCC
Confidence 000111246888888888777621000 000 012599999999998887753 222
Q ss_pred CC-------CceEEEEEcCCCC---eEEEEeCCCcEEEEEccccccccccc--CCceeeeeec-----------------
Q 040987 554 RD-------AGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAVG----------------- 604 (762)
Q Consensus 554 ~~-------~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~----------------- 604 (762)
. .......+..+|+ .++.++.+|.++++|..+++.+...+ ...|......
T Consensus 292 -~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~ 370 (668)
T 1kv9_A 292 -DSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEP 370 (668)
T ss_dssp -CCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSC
T ss_pred -ccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCe
Confidence 2 2222223334665 68889999999999999998763322 1112211100
Q ss_pred ----ccC--CCCeEEEEEcCCCcEEEEE------------------------------------c-CCeEEEEeCCCCeE
Q 040987 605 ----SYK--KKAMTAAAFSADGSVLAVA------------------------------------A-ETVITLWDPDRNVL 641 (762)
Q Consensus 605 ----~~~--~~~i~~~~~s~dg~~la~~------------------------------------~-d~~i~iwd~~~~~~ 641 (762)
... ...-..++++|+..++.+. . +|.|..||+.+|+.
T Consensus 371 ~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~ 450 (668)
T 1kv9_A 371 IVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKA 450 (668)
T ss_dssp EEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEE
T ss_pred eEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcE
Confidence 000 0011236788877665541 1 37899999999998
Q ss_pred EEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 642 VAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 642 ~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+-....+ .+.....+...+.+++.++.|+. |+.||.++|++++.+....
T Consensus 451 ~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~--l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 451 AWKVPYP-THWNGGTLSTAGNLVFQGTAAGQ--MHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp EEEEEES-SSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred EEEccCC-CCCcCceeEeCCCEEEEECCccc--chhhhhhcChhheEecCCC
Confidence 8777543 33444456667888999988887 9999999999999997653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-07 Score=88.39 Aligned_cols=250 Identities=10% Similarity=-0.030 Sum_probs=154.4
Q ss_pred CCEEEEEeCCEEEEEEcccceE-----EeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE
Q 040987 85 VKRLLVCTSNTVSIFSTSTGLQ-----ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159 (762)
Q Consensus 85 g~~la~~~~~~i~iwd~~~~~~-----~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~ 159 (762)
|++|..+..+.|+.+|+..... ...+......+.+++|++++. .+.++-..++.|.++|...+.....+
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~------~ly~~d~~~~~I~~~~~~g~~~~~~~ 74 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK------VVYWTDISEPSIGRASLHGGEPTTII 74 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT------EEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCC------EEEEEECCCCEEEEEecCCCCcEEEE
Confidence 4567777767899999865432 112222234678999999763 44455556788999988654321110
Q ss_pred EeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCce
Q 040987 160 DVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQ 239 (762)
Q Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 239 (762)
......+.
T Consensus 75 ------------------------------------------------------------------------~~~~~~p~ 82 (267)
T 1npe_A 75 ------------------------------------------------------------------------RQDLGSPE 82 (267)
T ss_dssp ------------------------------------------------------------------------CTTCCCEE
T ss_pred ------------------------------------------------------------------------ECCCCCcc
Confidence 00113467
Q ss_pred EEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec---CCeEEEEeccCCc
Q 040987 240 VITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV---TGRILIWRGFGDR 314 (762)
Q Consensus 240 ~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---dg~v~vw~~~~~~ 314 (762)
.+++.|++..|..+ ..+.|.++++...... ............++++|++..|..+.. .+.|..+++.+..
T Consensus 83 ~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~-----~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred EEEEEecCCeEEEEECCCCEEEEEEcCCCCEE-----EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 88999987766544 4678999998754321 222222246789999997665555543 3678888875432
Q ss_pred eeecccccccccccccccCCCCcccCCccccceee-eccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCC
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-HWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPR 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~ 392 (762)
. ..+ .........+++++++..|+.+. ..+.|.++|.+.........
T Consensus 158 ~-------------------------------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~ 206 (267)
T 1npe_A 158 R-------------------------------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE 206 (267)
T ss_dssp C-------------------------------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE
T ss_pred c-------------------------------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec
Confidence 1 111 11223467899999877776655 45789999998655433222
Q ss_pred CCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC
Q 040987 393 IGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG 459 (762)
Q Consensus 393 ~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 459 (762)
.......++.. +..++++. ..+.|.++|..+++.+..+..... .....+++.|++.
T Consensus 207 ~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~---------~~p~gi~~~~~~~ 263 (267)
T 1npe_A 207 GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ---------TRLYGITIALSQC 263 (267)
T ss_dssp CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC---------CCCCCEEEECSCC
T ss_pred CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc---------cccceeeecCccC
Confidence 22334566653 45555554 467999999999998888764321 1356788888754
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-05 Score=82.07 Aligned_cols=453 Identities=9% Similarity=-0.004 Sum_probs=254.0
Q ss_pred CEEEEEeCCEEEEEEcccceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccc
Q 040987 86 KRLLVCTSNTVSIFSTSTGLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFS 164 (762)
Q Consensus 86 ~~la~~~~~~i~iwd~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~ 164 (762)
.+|+.+..+.|+..|+++......+. ..-..+..|+|.+.+. .+.++-..++.|..+++........+.
T Consensus 7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~------~lywtD~~~~~I~r~~~~g~~~~~v~~---- 76 (628)
T 4a0p_A 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDN------RIYWTDISLKTISRAFMNGSALEHVVE---- 76 (628)
T ss_dssp CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTT------EEEEEETTTTEEEEEETTSCSCEEEEC----
T ss_pred cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCC------EEEEEECCCCeEEEEECCCCCcEEEEe----
Confidence 47777788999999998765433332 2235688999999774 444555567888888876432211110
Q ss_pred eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEEC
Q 040987 165 IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITIS 244 (762)
Q Consensus 165 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~s 244 (762)
.....+..+++.
T Consensus 77 --------------------------------------------------------------------~g~~~P~GlAvD 88 (628)
T 4a0p_A 77 --------------------------------------------------------------------FGLDYPEGMAVD 88 (628)
T ss_dssp --------------------------------------------------------------------SSCSCCCEEEEE
T ss_pred --------------------------------------------------------------------CCCCCcceEEEE
Confidence 011245677888
Q ss_pred CCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee--cCCeEEEEeccCCceeeccc
Q 040987 245 SSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD--VTGRILIWRGFGDRTFATND 320 (762)
Q Consensus 245 pdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~--~dg~v~vw~~~~~~~~~~~~ 320 (762)
+.+..|..+ ..+.|.+.++...... ............+++.|...+|.... ..+.|...++.+...
T Consensus 89 ~~~~~LY~tD~~~~~I~v~~~dG~~~~-----~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~----- 158 (628)
T 4a0p_A 89 WLGKNLYWADTGTNRIEVSKLDGQHRQ-----VLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER----- 158 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSTTCE-----EEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-----
T ss_pred eCCCEEEEEECCCCEEEEEecCCCcEE-----EEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-----
Confidence 776666543 4578889988765432 22223445678999999655565554 246777777655421
Q ss_pred ccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCCCeEE
Q 040987 321 NKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGSPLLY 399 (762)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~~v~~ 399 (762)
..+-..-.....++++++++.|+.+.. .+.|...|++......+.........
T Consensus 159 --------------------------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~g 212 (628)
T 4a0p_A 159 --------------------------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFG 212 (628)
T ss_dssp --------------------------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEE
T ss_pred --------------------------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceE
Confidence 111123345688999998878777654 47899999876554333333344567
Q ss_pred EEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCC-CC------------CCCCc-ccCceeeEEEe---------
Q 040987 400 FTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKL-PC------------PLPEE-YKGLCRDIAFN--------- 455 (762)
Q Consensus 400 ~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~-~~------------~~~~~-~~~~v~~~~~s--------- 455 (762)
+++.. + .++.+. ..+.|...|..+++....+..... +. ..+.. ..+....+++.
T Consensus 213 lav~~-~-~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~ 290 (628)
T 4a0p_A 213 LTQYQ-D-YIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCG 290 (628)
T ss_dssp EEEET-T-EEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEE
T ss_pred EEEEC-C-EEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEE
Confidence 77654 3 444444 467888888776654433322110 00 00000 01122222221
Q ss_pred --------CCCC-------EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 456 --------HDGG-------LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 456 --------~~~~-------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
+|++ +|+.+ ....|+-..+...... ....... . ...+..++|.+.+..|..++.
T Consensus 291 C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l~~~~~~-~~~l~~~------~-~~~~~~ld~d~~~~~iy~sD~-- 359 (628)
T 4a0p_A 291 CPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVIDEQQSP-DIILPIH------S-LRNVRAIDYDPLDKQLYWIDS-- 359 (628)
T ss_dssp CSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECCCTTCCC-CEECCCT------T-CSCEEEEEEETTTTEEEEEET--
T ss_pred cCCCcEecccCCcCccccceeeee-ccceEEEEecccccCc-eEEEEeh------h-cCCceEEEEecCCCeEEEEec--
Confidence 1211 22222 2233433333221110 0000000 0 234788999998877777763
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEe-ecCCCCCceEEEEEcCCCCeEE-EEeCCCcEEEEEcccccccccccCCce
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIV-YEPHRDAGISAVAFHPNRRAAV-SSSYGGDFKVWICNDELQQKDLQSSGW 598 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~~h~~~~v~~~~~spd~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~ 598 (762)
..+.|+.++.........+.... .... ......+++...++.|. +-+..+.|.+.++..... ..+
T Consensus 360 ------~~~~I~r~~~~g~~~~~v~~~~~~~~~~-~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G~~~-~~l----- 426 (628)
T 4a0p_A 360 ------RQNMIRKAQEDGSQGFTVVVSSVPSQNL-EIQPYDLSIDIYSRYIYWTCEATNVINVTRLDGRSV-GVV----- 426 (628)
T ss_dssp ------TTTEEEEEETTSCSCEEEEC---------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCEE-EEE-----
T ss_pred ------CcceEEEEEcCCCCceEEEEcccccccc-cCCcceEEeeccCCeEEEEcCCCCEEEEEECCCCeE-EEE-----
Confidence 45678888876544322221100 0001 34678999998766554 555667899998864322 221
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc--CC--eEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCe
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA--ET--VITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQ 674 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~--~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~ 674 (762)
.........++++.|...+|.... .. .|...+++...........-...+.+++.++++.|+.+.... +.
T Consensus 427 -----~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~-~~ 500 (628)
T 4a0p_A 427 -----LKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDL-RR 500 (628)
T ss_dssp -----EECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT-TE
T ss_pred -----EeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCC-CE
Confidence 112245688999999444444433 33 677777774433333333334568999999888888876543 24
Q ss_pred EEEEECCCCc
Q 040987 675 LSVWNMSKLS 684 (762)
Q Consensus 675 v~vwd~~~~~ 684 (762)
|...+++...
T Consensus 501 I~~~~~dG~~ 510 (628)
T 4a0p_A 501 IESSDLSGAN 510 (628)
T ss_dssp EEEEETTSCS
T ss_pred EEEEeCCCCc
Confidence 8889985543
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-10 Score=116.29 Aligned_cols=257 Identities=11% Similarity=-0.008 Sum_probs=142.4
Q ss_pred CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 364 DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 364 ~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
++..+++++.|+.|+.||..+|+....... ..+.+..+..++..+++++.|+.++.||..+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~------ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP------ 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc------
Confidence 567899999999999999999998644333 4444444556777888778999999999998887666543210
Q ss_pred cccCcee-eEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc
Q 040987 444 EYKGLCR-DIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE 522 (762)
Q Consensus 444 ~~~~~v~-~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~ 522 (762)
..+. ...+. ++..+++++.++.++.||..+++....+... . ...++|++..+++++
T Consensus 81 ---~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~----------~----~~~~~p~~~~v~~~~----- 137 (369)
T 2hz6_A 81 ---ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA----------F----ADSLSPSTSLLYLGR----- 137 (369)
T ss_dssp ---HHHTTCSCC------CCCCEEEEEEEEECCC------------------------------------EEEEE-----
T ss_pred ---cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC----------C----cccccccCCEEEEEe-----
Confidence 0111 11111 3456778889999999999999887665431 1 234566888888887
Q ss_pred cCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---CeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 523 EGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---RAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 523 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.++.|+.||..+++..+.+... .....+++++. ..+++++.||.++.||..+++..-..
T Consensus 138 ----~dg~v~a~d~~tG~~~W~~~~~--------~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~------ 199 (369)
T 2hz6_A 138 ----TEYTITMYDTKTRELRWNATYF--------DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ------ 199 (369)
T ss_dssp ----EEEEEECCCSSSSSCCCEEEEE--------EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE------
T ss_pred ----cCCEEEEEECCCCCEEEeEecc--------cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe------
Confidence 7899999999999887766421 11223344432 56777889999999999988764332
Q ss_pred eeeecccCCCCe-EEEEEcCCCcEEE---EEcCCeEEEEeCCCCe----EEEEeccccCceeEEEEeC--CCCEEEEEEc
Q 040987 600 CHAVGSYKKKAM-TAAAFSADGSVLA---VAAETVITLWDPDRNV----LVAVIGETLTPIMNMSFVG--SSEYLVATSW 669 (762)
Q Consensus 600 ~~~~~~~~~~~i-~~~~~s~dg~~la---~~~d~~i~iwd~~~~~----~~~~l~~~~~~v~~~~~s~--dg~~l~s~~~ 669 (762)
. ...++ ....++++|...+ ...++.++.+|..+|+ .+-.... ...+. +| .+..|+.++.
T Consensus 200 -~-----~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~-~~~~~----sp~~~~g~lyv~~~ 268 (369)
T 2hz6_A 200 -N-----YASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPF-PKETE----AKSKLTPTLYVGKY 268 (369)
T ss_dssp -E-----CSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCCC-CCHHH----HHHHSEEEECBEEC
T ss_pred -c-----CCCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeecc-Ccccc----ccccccceEEEecc
Confidence 1 12233 3445566765321 1124456666666665 3322221 11111 22 3457888888
Q ss_pred CCCCeEEEEECC
Q 040987 670 GSKPQLSVWNMS 681 (762)
Q Consensus 670 d~~~~v~vwd~~ 681 (762)
||. |+.++..
T Consensus 269 ~G~--l~al~~~ 278 (369)
T 2hz6_A 269 STS--LYASPSM 278 (369)
T ss_dssp SSC--EECCEEE
T ss_pred cCC--EEecCcc
Confidence 887 8888776
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-08 Score=104.54 Aligned_cols=311 Identities=8% Similarity=-0.054 Sum_probs=183.7
Q ss_pred CCEEEEEec-CCeEEEEec-CCCceeccCCCCCC------------eEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEE
Q 040987 365 GAYLYSGGK-EGVLVVWQL-DTGKKKFLPRIGSP------------LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 365 g~~l~s~~~-dg~i~~wd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~ 430 (762)
+..++.++. ++.|+.+|. ++|+.+........ ...+++ ++..+++++.++.+..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 346666666 788999999 89887533222111 011222 35678888889999999999999988
Q ss_pred EEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeeccccc----CCC----
Q 040987 431 SISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ----PGD---- 495 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~---- 495 (762)
......... ...+. ...+. ++ .+++++. ++.|+.+|..+++.+.++........ +..
T Consensus 140 ~~~~~~~~~------~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~ 211 (571)
T 2ad6_A 140 EVEVCDPKV------GSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSAN 211 (571)
T ss_dssp EEECCCGGG------TCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTC
T ss_pred EecCCCCCc------cceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccc
Confidence 765322100 00111 11122 34 4555554 78999999999998887664321100 000
Q ss_pred --------------------CcceeEEEEEEecCCCeEEEEeeecc--------ccCCCceeEEEEEEecCCCceeEEEE
Q 040987 496 --------------------DVTVVVTLVALSQDGSLMSTVDIKLA--------EEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 496 --------------------~~~~~v~~~~~sp~g~~l~~~~~~~~--------~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
........+++.++...+..+..+.. .+.. ..+.|..+|..+++..+..+.
T Consensus 212 ~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~-y~~~v~Ald~~tG~~~W~~~~ 290 (571)
T 2ad6_A 212 PHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNK-WTMTIWGRDLDTGMAKWGYQK 290 (571)
T ss_dssp GGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT-TTTEEEEEETTTCCEEEEEES
T ss_pred ccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCce-eEEEEEEEecCCCcEEEEecC
Confidence 00000123567776666666542100 0000 013699999999998877653
Q ss_pred EeecCCC-------CCceEEEEEcCCCC---eEEEEeCCCcEEEEEcccccccccccC---Cceeeeeec----------
Q 040987 548 IVYEPHR-------DAGISAVAFHPNRR---AAVSSSYGGDFKVWICNDELQQKDLQS---SGWSCHAVG---------- 604 (762)
Q Consensus 548 ~~~~~h~-------~~~v~~~~~spd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~---------- 604 (762)
.+|. ...+ -+...++|+ .++.++.+|.++++|..+++.+-..+. ..|......
T Consensus 291 ---~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~ 366 (571)
T 2ad6_A 291 ---TPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPE 366 (571)
T ss_dssp ---STTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGG
T ss_pred ---CCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccc
Confidence 2220 1111 122234674 577788899999999999887644320 111110000
Q ss_pred -------------cc--CCCCeEEEEEcCCCcEEEEEc--------------------------------------CCeE
Q 040987 605 -------------SY--KKKAMTAAAFSADGSVLAVAA--------------------------------------ETVI 631 (762)
Q Consensus 605 -------------~~--~~~~i~~~~~s~dg~~la~~~--------------------------------------d~~i 631 (762)
.. ....-..++++|+..++.+.. ++.|
T Consensus 367 ~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l 446 (571)
T 2ad6_A 367 FATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQI 446 (571)
T ss_dssp GCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEE
T ss_pred cCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeE
Confidence 00 000013467888877776542 4789
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
..||..+|+.+-..... .++....+...+..++.++.|+. |+.||.++|+++|++....
T Consensus 447 ~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~--l~a~D~~tG~~lw~~~~~~ 505 (571)
T 2ad6_A 447 RAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGY--LKALDNKDGKELWNFKMPS 505 (571)
T ss_dssp EEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSS
T ss_pred EEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCe--EEEEECCCCCEEEEEeCCC
Confidence 99999999988777532 33333334445667888888887 9999999999999998664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-10 Score=116.56 Aligned_cols=229 Identities=10% Similarity=0.031 Sum_probs=127.4
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEV 484 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 484 (762)
++..+++++.++.++.||..+|+.+..+.. . .+.+..+..++..+++++.|+.|+.||..+++.+...
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~-----------~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-D-----------PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-----------CSCCCC-----CCEEECTTTCCEEEC-----CCSEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-C-----------CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeee
Confidence 578899999999999999999999988865 2 2233334567777888889999999999988776554
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
......... ..+ .+. ++..+++++ .++.++.||..+++..+.+.. + . ...++
T Consensus 76 ~~~~~~~~~----~sp----~~~-~~~~v~~g~---------~dg~v~a~D~~tG~~~w~~~~-----~-~----~~~~~ 127 (369)
T 2hz6_A 76 PFTIPELVQ----ASP----CRS-SDGILYMGK---------KQDIWYVIDLLTGEKQQTLSS-----A-F----ADSLS 127 (369)
T ss_dssp SCCHHHHHT----TCS----CC------CCCCE---------EEEEEEEECCC---------------------------
T ss_pred eccCccccc----cCc----eEe-cCCEEEEEe---------CCCEEEEEECCCCcEEEEecC-----C-C----ccccc
Confidence 322110000 000 111 344566666 778999999999988776632 2 1 23556
Q ss_pred CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCCCe
Q 040987 565 PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG---SVLAVAA-ETVITLWDPDRNV 640 (762)
Q Consensus 565 pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~~~ 640 (762)
|++..+++++.|+.|+.||..+++..-... . ......++++++ ..+++++ ||.|+.||..+|+
T Consensus 128 p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-------~------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 128 PSTSLLYLGRTEYTITMYDTKTRELRWNAT-------Y------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp -----EEEEEEEEEEECCCSSSSSCCCEEE-------E------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred ccCCEEEEEecCCEEEEEECCCCCEEEeEe-------c------ccccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 788899999999999999999887654331 0 011223333432 3444555 9999999999999
Q ss_pred EEEEeccccCcee-EEEEeCCCCEE----EEEEcCCCCeEEEEECCCCc----eeeEEEE
Q 040987 641 LVAVIGETLTPIM-NMSFVGSSEYL----VATSWGSKPQLSVWNMSKLS----ISWSYLL 691 (762)
Q Consensus 641 ~~~~l~~~~~~v~-~~~~s~dg~~l----~s~~~d~~~~v~vwd~~~~~----~~~~~~~ 691 (762)
.+-... ...++. ...+++||... +.+ ++. ++.+|..+|+ ++|.+..
T Consensus 195 ~~W~~~-~~~pv~~~~~~~~dg~~~v~~~~~~--~~~--l~~ld~~tG~~~~~~~W~~~~ 249 (369)
T 2hz6_A 195 VLWIQN-YASPVVAFYVWQREGLRKVMHINVA--VET--LRYLTFMSGEVGRITKWKYPF 249 (369)
T ss_dssp EEEEEE-CSSCEEEEEECTTSSCEEECCEEEE--HHH--HHHHHHHHHHHHHHHTSCCCC
T ss_pred EEEEec-CCCceEEEEEecCCceEeccceeec--ccc--eeeeehhcCCcccceeeeecc
Confidence 887765 334443 34555666532 222 333 7778887787 7776653
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.5e-07 Score=86.71 Aligned_cols=256 Identities=10% Similarity=-0.021 Sum_probs=151.9
Q ss_pred CCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe-ecCCeEEEEeccCCceeecccccccc
Q 040987 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 247 g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
|++|..+..+.|+.+++....................+..++|+++++.|..+ ..++.|..++..+....
T Consensus 1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--------- 71 (267)
T 1npe_A 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--------- 71 (267)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------
T ss_pred CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcE---------
Confidence 34666655668999998765431000011222223467899999976655554 45688999998654211
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCC-CCCCeEEEEeC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPR-IGSPLLYFTES 403 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~-~~~~v~~~~~s 403 (762)
............+++++++..|+.+. ..+.|.+++.+......+.. .......++++
T Consensus 72 ---------------------~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd 130 (267)
T 1npe_A 72 ---------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (267)
T ss_dssp ---------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ---------------------EEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEe
Confidence 11111224568899999766666554 45789999987544332222 22467889999
Q ss_pred CCCCeEEEEec---CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCC
Q 040987 404 PDPSLSSISCA---DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDR 479 (762)
Q Consensus 404 ~~~~~l~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~ 479 (762)
|++..|+.+.. .+.|..+++.... ...+.... . .....+++++++..|..+ ...+.|..+|.....
T Consensus 131 ~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~--~-------~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~ 200 (267)
T 1npe_A 131 PVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDN--L-------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (267)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTT--C-------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred eCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECC--C-------CCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCc
Confidence 97776666654 3678888876432 22221111 1 456889999987766554 456789999987532
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
.. .+.. . ......++.. +..|..+.. ..+.|..+|..+++....+.. +. .....
T Consensus 201 ~~-~~~~--~--------~~~P~gi~~d--~~~lyva~~--------~~~~v~~~d~~~g~~~~~i~~----g~-~~~p~ 254 (267)
T 1npe_A 201 RR-KVLE--G--------LQYPFAVTSY--GKNLYYTDW--------KTNSVIAMDLAISKEMDTFHP----HK-QTRLY 254 (267)
T ss_dssp EE-EEEE--C--------CCSEEEEEEE--TTEEEEEET--------TTTEEEEEETTTTEEEEEECC----SS-CCCCC
T ss_pred eE-EEec--C--------CCCceEEEEe--CCEEEEEEC--------CCCeEEEEeCCCCCceEEEcc----cc-ccccc
Confidence 22 1111 1 1123455554 455555542 567899999988876655532 11 12355
Q ss_pred EEEEcCCCC
Q 040987 560 AVAFHPNRR 568 (762)
Q Consensus 560 ~~~~spd~~ 568 (762)
.+++.|++.
T Consensus 255 gi~~~~~~~ 263 (267)
T 1npe_A 255 GITIALSQC 263 (267)
T ss_dssp CEEEECSCC
T ss_pred eeeecCccC
Confidence 677777753
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.4e-07 Score=101.28 Aligned_cols=314 Identities=8% Similarity=-0.009 Sum_probs=183.8
Q ss_pred CCEEEEEec-CCeEEEEec-CCCceeccCCCCCC------------eEEEEeCCCCCe----EEEEecCCcEEEEEcCCc
Q 040987 365 GAYLYSGGK-EGVLVVWQL-DTGKKKFLPRIGSP------------LLYFTESPDPSL----SSISCADNQVHLLKMPSM 426 (762)
Q Consensus 365 g~~l~s~~~-dg~i~~wd~-~~~~~~~~~~~~~~------------v~~~~~s~~~~~----l~~~~~d~~i~i~d~~~~ 426 (762)
+..++.++. ++.|.-+|. ++|+.+........ ...++++|.+.. +++++.++.+..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 346666776 788999999 89887533222111 122445444444 888889999999999999
Q ss_pred eEEEEEccCCCCCCCCCcccCcee-eEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeeccccc----CCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCR-DIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQ----PGD 495 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~----~~~ 495 (762)
+.+.......... ...+. ...+. ++ .+++++ .++.|+.+|..+++.+.++........ +..
T Consensus 142 ~~~W~~~~~~~~~------~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~ 213 (599)
T 1w6s_A 142 ETVWKVENSDIKV------GSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDF 213 (599)
T ss_dssp CEEEEEECCCGGG------TCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTT
T ss_pred CEEEeecCCCCCc------cceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccc
Confidence 9987765322100 00111 11222 34 455554 378999999999998877764322100 000
Q ss_pred -------------------C---c-ce-eEEEEEEecCCCeEEEEeeec-c-------ccCCCceeEEEEEEecCCCcee
Q 040987 496 -------------------D---V-TV-VVTLVALSQDGSLMSTVDIKL-A-------EEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 496 -------------------~---~-~~-~v~~~~~sp~g~~l~~~~~~~-~-------~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
+ . .. .-..+++.++...+..+..+. + .+.. ....|..+|.++++..+
T Consensus 214 ~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~-y~~sv~Ald~~TG~~~W 292 (599)
T 1w6s_A 214 NIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNK-WTMTIFGRDADTGEAKF 292 (599)
T ss_dssp TTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCT-TSSEEEEEETTTCCEEE
T ss_pred ccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCcc-ccceEEEEeCCCCceee
Confidence 0 0 00 001356667777777665210 0 0000 12489999999999888
Q ss_pred EEEEEeecCCCCC-------ceEEEEEc-CCC---CeEEEEeCCCcEEEEEcccccccccccC---Cceeeeeecc----
Q 040987 544 TLSTIVYEPHRDA-------GISAVAFH-PNR---RAAVSSSYGGDFKVWICNDELQQKDLQS---SGWSCHAVGS---- 605 (762)
Q Consensus 544 ~~~~~~~~~h~~~-------~v~~~~~s-pd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~---- 605 (762)
..+. .+| .. ...-+... .+| +.++.++.+|.++++|..+++.+-..+. ..|.......
T Consensus 293 ~~q~---~~~-d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p 368 (599)
T 1w6s_A 293 GYQK---TPH-DEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQP 368 (599)
T ss_dssp EEES---STT-CSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCE
T ss_pred Eeec---CCC-ccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCce
Confidence 7753 223 21 11112222 467 5677788999999999999887654320 1111100000
Q ss_pred ---------------------cCCCCeEEEEEcCCCcEEEEE--------------------------------------
Q 040987 606 ---------------------YKKKAMTAAAFSADGSVLAVA-------------------------------------- 626 (762)
Q Consensus 606 ---------------------~~~~~i~~~~~s~dg~~la~~-------------------------------------- 626 (762)
.....-..++++|+.+++.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~ 448 (599)
T 1w6s_A 369 VRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQN 448 (599)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTT
T ss_pred eeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCccc
Confidence 000111246677776665442
Q ss_pred --cCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 627 --AETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 627 --~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.+|.|..||+.+|+.+-.... ..+...-...-.+.+++.++.|+. |+.||.++|+++|+++....
T Consensus 449 ~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~~~tagg~vf~gt~dg~--l~A~D~~tG~~lW~~~l~~g 515 (599)
T 1w6s_A 449 YEGLGQIKAYNAITGDYKWEKME-RFAVWGGTMATAGDLVFYGTLDGY--LKARDSDTGDLLWKFKIPSG 515 (599)
T ss_dssp TBCCEEEEEECTTTCCEEEEEEE-SSCCCSBCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred CCCcCeEEEEECCCCCEEeEecC-CCCccCcceEecCCEEEEECCCCe--EEEEECCCCCEEEEeeCCCC
Confidence 136789999999988776642 222222223335677888999987 99999999999999987643
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-08 Score=90.22 Aligned_cols=203 Identities=10% Similarity=0.020 Sum_probs=137.5
Q ss_pred eeEEEEecCCCEEEEEec--CCeEEEEecCCCceeccCCCCCC--eEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEE
Q 040987 356 VSVLIFSSDGAYLYSGGK--EGVLVVWQLDTGKKKFLPRIGSP--LLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIR 430 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~ 430 (762)
...+.|++|+...++.+. ++.|.++|+.+++.......+.. ...+++. ++.|+.+. .++.+.++|..+++.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 578999998754444443 57999999999998654332222 2334443 55565554 47899999999999999
Q ss_pred EEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 431 SISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
++.... + ....+++||+.++++..++.|.++|..+.+....+.....+.. -..+..+.|. +|
T Consensus 101 ~i~~g~-~-----------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p-----~~~~nele~~-dg 162 (266)
T 2iwa_A 101 NFTHQM-K-----------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHR-----VIRLNELEYI-NG 162 (266)
T ss_dssp EEECCS-S-----------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TT
T ss_pred EEECCC-C-----------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcc-----cccceeEEEE-CC
Confidence 886431 1 1244667888888777789999999999888887765432110 1236778888 77
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee------cCC-CCCceEEEEEcCCCCeE-EEEeCCCcEEEE
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY------EPH-RDAGISAVAFHPNRRAA-VSSSYGGDFKVW 582 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------~~h-~~~~v~~~~~spd~~~l-~~~~~dg~i~iw 582 (762)
+..+... .++.|.+.|..+++....+..... ..+ .....+.++|+|+++.+ +++...+.+.+.
T Consensus 163 ~lyvn~~---------~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 163 EVWANIW---------QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEET---------TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred EEEEecC---------CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 5554443 567999999999988777653100 001 01356899999998755 455567788888
Q ss_pred Ecccc
Q 040987 583 ICNDE 587 (762)
Q Consensus 583 d~~~~ 587 (762)
++...
T Consensus 234 ~l~~~ 238 (266)
T 2iwa_A 234 KLHLV 238 (266)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 87654
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=5.6e-07 Score=99.13 Aligned_cols=331 Identities=11% Similarity=0.071 Sum_probs=188.4
Q ss_pred CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-cce-eEEEEecCCCEEEE
Q 040987 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-SEV-SVLIFSSDGAYLYS 370 (762)
Q Consensus 293 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v-~~~~~s~~g~~l~s 370 (762)
+..|++++.++.|.-+|..+++.+-......... ...... ..+ ..+++ .+..++.
T Consensus 66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~---------------------~~~~~~~~~~~~~~~~--~~~~v~v 122 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKV---------------------KARTSCCDAVNRGVAL--WGDKVYV 122 (668)
T ss_dssp TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGG---------------------GGGGCTTCSCCCCCEE--EBTEEEE
T ss_pred CCEEEEECCCCeEEEEECCCChhceEECCCCCcc---------------------ccccccccCCccceEE--ECCEEEE
Confidence 4456777778899999988887654221100000 000000 000 11222 2457888
Q ss_pred EecCCeEEEEecCCCceeccCCCCC--CeEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEccCCC-CC
Q 040987 371 GGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISGIKL-PC 439 (762)
Q Consensus 371 ~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~~~-~~ 439 (762)
++.|+.|..+|.++|+.+....... ....+..+| .+..++++.. ++.|..+|..+|+.+..+..... +.
T Consensus 123 ~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~ 202 (668)
T 1kv9_A 123 GTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPA 202 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred EcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCC
Confidence 8889999999999999853222110 000011111 1335555543 48899999999999988754211 10
Q ss_pred CC-CC-------------------cccCceeeEEEeCCCCEEEEeecCce-------------------EEEEEcCCCCc
Q 040987 440 PL-PE-------------------EYKGLCRDIAFNHDGGLVALRAENYC-------------------IHFYSLLDDRG 480 (762)
Q Consensus 440 ~~-~~-------------------~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~i~d~~~~~~ 480 (762)
.. .. ........++++|+...+++++.++. |..+|..+++.
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~ 282 (668)
T 1kv9_A 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL 282 (668)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred ccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce
Confidence 00 00 00011235789998888888887763 99999999998
Q ss_pred eeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe------ec
Q 040987 481 ISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV------YE 551 (762)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~ 551 (762)
....+.......... ...+.....+..+|+ .++.++ .++.++++|..+++.+....... +.
T Consensus 283 ~W~~~~~~~~~wd~~-~~~~~~~~d~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d 352 (668)
T 1kv9_A 283 AWHYQVTPGDSWDFT-ATQQITLAELNIDGKPRKVLMQAP---------KNGFFYVLDRTNGKLISAEKFGKVTWAEKVD 352 (668)
T ss_dssp EEEEESSTTCCSCCC-CCSCEEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCCSEEEEC
T ss_pred eeEeecCCCcccccc-CCCCcEEEEeccCCcEEEEEEEEC---------CCCEEEEEECCCCCEeccccccccccccccc
Confidence 877764321100000 012233333445775 677777 88999999999998764332100 00
Q ss_pred CCCCC------------------------ceEEEEEcCCCCeEEEEe---------------------------------
Q 040987 552 PHRDA------------------------GISAVAFHPNRRAAVSSS--------------------------------- 574 (762)
Q Consensus 552 ~h~~~------------------------~v~~~~~spd~~~l~~~~--------------------------------- 574 (762)
..... .-..++++|+..+++...
T Consensus 353 ~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p 432 (668)
T 1kv9_A 353 LATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVP 432 (668)
T ss_dssp TTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCC
T ss_pred cccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCC
Confidence 00000 011267788766655421
Q ss_pred ---CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccC
Q 040987 575 ---YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLT 650 (762)
Q Consensus 575 ---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~ 650 (762)
.+|.|..||+.+++.+-.. .. ........+...+.++++++ |+.++.||.++|+.+..++....
T Consensus 433 ~~~~~g~l~A~D~~tG~~~W~~-------~~-----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~ 500 (668)
T 1kv9_A 433 AAVVSGALLAWDPVKQKAAWKV-------PY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSG 500 (668)
T ss_dssp GGGCEEEEEEEETTTTEEEEEE-------EE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred CCCccceEEEEeCCCCcEEEEc-------cC-----CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCC
Confidence 2367888999888764333 11 12222334445778888888 99999999999999988865432
Q ss_pred ce-eEEEEeCCCC-EEEEEE
Q 040987 651 PI-MNMSFVGSSE-YLVATS 668 (762)
Q Consensus 651 ~v-~~~~~s~dg~-~l~s~~ 668 (762)
.. .-+.+..+|+ +++.++
T Consensus 501 ~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 501 IVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp CCSCCEEEEETTEEEEEEEE
T ss_pred cccCceEEEECCEEEEEEEe
Confidence 21 2345566777 444444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=0.00012 Score=79.33 Aligned_cols=528 Identities=9% Similarity=-0.024 Sum_probs=276.4
Q ss_pred CCCeEEEEecCCcceeee--ecCcccccCCceeecCCCEEEEEe--CCEEEEEEcccceEEeeecCCccceeEEEEeCCC
Q 040987 51 SSGLCRTAEYPAVNSKMI--RGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126 (762)
Q Consensus 51 ~~g~i~~~~~~~~~~~~~--~~h~~~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~ 126 (762)
..+.|+..++.+...... .+.-..+. +++|.+++..|..+. ++.|..+++..+.....+.........+++.+.+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~-~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEAS-ALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceE-EEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 347888889886543322 12223344 499999887877776 4899999986554433343333567889999876
Q ss_pred CcccceeeeEEeeecCCeEEEEeCCCcceEEEEEec-cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCcc
Q 040987 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVK-FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKK 205 (762)
Q Consensus 127 ~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (762)
. ++.++-...+.|.+.++........+... .....+++ .+... ..|+..
T Consensus 92 ~------~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iav--------dp~~G----~lY~tD------------ 141 (628)
T 4a0p_A 92 K------NLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALAL--------DPAEG----FMYWTE------------ 141 (628)
T ss_dssp T------EEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEE--------ETTTT----EEEEEE------------
T ss_pred C------EEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEE--------ccCCC----eEEEeC------------
Confidence 4 45556666789999998754322222111 23444443 11000 111111
Q ss_pred CCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcC
Q 040987 206 EPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKK 283 (762)
Q Consensus 206 ~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 283 (762)
.+..+.|...+++..... .+...-..+..++++++++.|..+ ..+.|...++..... +........
T Consensus 142 ----~g~~~~I~r~~~dG~~~~--~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~------~v~~~~l~~ 209 (628)
T 4a0p_A 142 ----WGGKPKIDRAAMDGSERT--TLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR------EVIADDLPH 209 (628)
T ss_dssp ----CSSSCEEEEEETTSCSCE--EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC------EEEEECCSC
T ss_pred ----CCCCCEEEEEeCCCCceE--EEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce------EEeeccCCC
Confidence 012446666666443322 233345678999999988887654 467899999876543 223333445
Q ss_pred eEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccc----cccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 284 LTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDN----KMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 284 v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
...+++.. +....+-...+.|...|..+++....... ......+....+ .. ..++ .. ..+....+
T Consensus 210 P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q-~~-----~n~C-~~---~ng~C~~~ 278 (628)
T 4a0p_A 210 PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLDYVMDILVFHSSRQ-SG-----WNEC-AS---SNGHCSHL 278 (628)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCCSCCEEEEECGGGS-CC-----CCTT-TT---TGGGCSSE
T ss_pred ceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEEecCCCCcceeeeeeeccc-cc-----ceEe-cc---CCCCcchh
Confidence 66888765 44444444578888888665543221100 000000000000 00 0000 00 00111112
Q ss_pred EEe-cCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE-EEEccCCC
Q 040987 360 IFS-SDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII-RSISGIKL 437 (762)
Q Consensus 360 ~~s-~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~ 437 (762)
+.. |.+.+-..+ ..|...-.| ...|. .+ ..+|+.+ ....|+-..+...... ..+...
T Consensus 279 C~~~~~~~~~C~C-~~g~~l~~d--------------~~~C~--~~-~~~Ll~s-~~~~i~~i~l~~~~~~~~~l~~~-- 337 (628)
T 4a0p_A 279 CLAVPVGGFVCGC-PAHYSLNAD--------------NRTCS--AP-TTFLLFS-QKSAINRMVIDEQQSPDIILPIH-- 337 (628)
T ss_dssp EEEETTTEEEEEC-STTCEECTT--------------SSCEE--CC-SSEEEEE-ETTEEEEECCCTTCCCCEECCCT--
T ss_pred hhcCCCCCeeEEc-CCCcEeccc--------------CCcCc--cc-cceeeee-ccceEEEEecccccCceEEEEeh--
Confidence 222 212222221 222110000 01111 12 2344443 3455655555432110 011100
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
.-..+..++|.+.+..|..+. ..+.|+.+++........+....... .....+..+++...++.|..+
T Consensus 338 -------~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~----~~~~~p~glAvD~~~~nLY~t 406 (628)
T 4a0p_A 338 -------SLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQ----NLEIQPYDLSIDIYSRYIYWT 406 (628)
T ss_dssp -------TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------CCCEEEEEEETTTTEEEEE
T ss_pred -------hcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccc----cccCCcceEEeeccCCeEEEE
Confidence 014577899999766666553 45778888875433221211100000 002357899999988777665
Q ss_pred eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCC--cEEEEEcccccccccc
Q 040987 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGG--DFKVWICNDELQQKDL 593 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 593 (762)
+. ..+.|.+.++... ....+. ... .....++++.| .|.++.+-.... .|...+++........
T Consensus 407 d~--------~~~~I~v~~~~G~-~~~~l~----~~~-l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~ 472 (628)
T 4a0p_A 407 CE--------ATNVINVTRLDGR-SVGVVL----KGE-QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLF 472 (628)
T ss_dssp ET--------TTTEEEEEETTSC-EEEEEE----ECT-TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEE
T ss_pred cC--------CCCEEEEEECCCC-eEEEEE----eCC-CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEE
Confidence 42 5678999988643 222221 223 45688999999 555555433222 4666666543322211
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS 671 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~ 671 (762)
...-...+.+++.++++.|..+. .+.|...+++................+++... ..|+.+....
T Consensus 473 -----------~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~~~~~~~~~~P~glav~~--~~ly~tD~~~ 539 (628)
T 4a0p_A 473 -----------FSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQPVGLTVFE--NWLYWIDKQQ 539 (628)
T ss_dssp -----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCEEEEEEET--TEEEEEETTT
T ss_pred -----------eccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceEEEEcCCCCCcEEEEEEC--CEEEEEECCC
Confidence 11234678999999888887775 68999999965433222223333456777755 4555555443
Q ss_pred CCeEEEEECCCCceeeEEEEe
Q 040987 672 KPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 672 ~~~v~vwd~~~~~~~~~~~~~ 692 (762)
..|...|..+|+....+...
T Consensus 540 -~~i~~~~k~~G~~~~~i~~~ 559 (628)
T 4a0p_A 540 -QMIEKIDMTGREGRTKVQAR 559 (628)
T ss_dssp -TEEEEEETTSSSCCEEEECC
T ss_pred -CeEEEEECcCCCCcEEEecc
Confidence 24888898888866655543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.95 E-value=8.4e-08 Score=89.03 Aligned_cols=191 Identities=9% Similarity=0.055 Sum_probs=131.9
Q ss_pred eeEEEEecCCCEEEEEecCC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~ 432 (762)
...+.|+ ++.+..+.+.+| .|+.+|+++++.......+.........+++..|+... .++.+.+||..+.+.+.++
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti 123 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSF 123 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEE
Confidence 3678888 676666777665 89999999999865544555554433344566666654 4789999999999999998
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.-.. ....+++|++.|+....++.|.++|..+.+....+.....+.. -..++.+.+. +|+.
T Consensus 124 ~~~~-------------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~-----~~~lNELe~~-~G~l 184 (262)
T 3nol_A 124 NYDG-------------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEE-----LPELNELEWV-DGEI 184 (262)
T ss_dssp ECSS-------------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEE-----CCCEEEEEEE-TTEE
T ss_pred ECCC-------------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcc-----ccccceeEEE-CCEE
Confidence 7532 2234456788888777788899999999998888776532110 1234567776 7765
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC------CCCCceEEEEEcCCCCeEEEEeC
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP------HRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~------h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.+..- .+..|.+.|..+++....+...-+.+ ......+.++|+|+++.|+..+.
T Consensus 185 yan~w---------~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 185 FANVW---------QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEET---------TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEc---------cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 55443 56799999999998877765421111 10235689999998887776663
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2e-07 Score=100.34 Aligned_cols=281 Identities=13% Similarity=0.068 Sum_probs=160.0
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCCC--eEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP--LLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..++.++.|+.+..+|.++|+.+........ -..+.-+| .+..+++++. ++.|..+|..+|+.+..+..
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 45788888899999999999988542221110 00011111 1345555554 78999999999999887764
Q ss_pred CCCCCC---CCC------------------------cccC-ceeeEEEeCCCCEEEEeecC----------------ceE
Q 040987 435 IKLPCP---LPE------------------------EYKG-LCRDIAFNHDGGLVALRAEN----------------YCI 470 (762)
Q Consensus 435 ~~~~~~---~~~------------------------~~~~-~v~~~~~s~~~~~l~~~~~d----------------g~i 470 (762)
...... .+. ...+ ....+++.++...+..++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 321100 000 0000 01246777876777766532 369
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..+|..+++.+...+......-.......++ -+...++|+ .++.++ .++.+.++|..+++.+.....
T Consensus 275 ~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~~w~~~~ 344 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHID---------RNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEEC---------TTSEEEEEETTTCCEEEEEES
T ss_pred EEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeC---------CCcEEEEEECCCCCEEeeecc
Confidence 9999999988777654321000000001112 123335784 566666 778999999999987766532
Q ss_pred Ee-e------cCCCCCce--------------------------EEEEEcCCCCeEEEEeC-------------------
Q 040987 548 IV-Y------EPHRDAGI--------------------------SAVAFHPNRRAAVSSSY------------------- 575 (762)
Q Consensus 548 ~~-~------~~h~~~~v--------------------------~~~~~spd~~~l~~~~~------------------- 575 (762)
.. . ......++ ..++++|+..+++....
T Consensus 345 ~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~ 424 (571)
T 2ad6_A 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFF 424 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCC
T ss_pred cCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcc
Confidence 10 0 00000011 24678888777766542
Q ss_pred ------------------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeC
Q 040987 576 ------------------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDP 636 (762)
Q Consensus 576 ------------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~ 636 (762)
+|.|..||..+++.+-.. .. ...+....+...+..+++++ |+.|+.+|.
T Consensus 425 ~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~-------~~-----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~ 492 (571)
T 2ad6_A 425 VGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTK-------WE-----KFAAWGGTLYTKGGLVWYATLDGYLKALDN 492 (571)
T ss_dssp CCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEE-------EE-----SSCCCSBCEEETTTEEEEECTTSEEEEEET
T ss_pred ccccceeccCccccCCCCCCeEEEEECCCCCEEEEe-------cC-----CCCccceeEEECCCEEEEEcCCCeEEEEEC
Confidence 467888888877654332 11 11122222233456677777 999999999
Q ss_pred CCCeEEEEeccccCc-eeEEEEeCCCCEEEEE
Q 040987 637 DRNVLVAVIGETLTP-IMNMSFVGSSEYLVAT 667 (762)
Q Consensus 637 ~~~~~~~~l~~~~~~-v~~~~~s~dg~~l~s~ 667 (762)
++|+++..+...... -..+.+..+|+.++..
T Consensus 493 ~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~ 524 (571)
T 2ad6_A 493 KDGKELWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred CCCCEEEEEeCCCCcEeeeEEEEECCEEEEEE
Confidence 999999887643221 1234466777755543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=5.5e-07 Score=84.92 Aligned_cols=208 Identities=9% Similarity=-0.076 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCcEEEEeec--CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 283 KLTVLAFHPTQRIVAAGDV--TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
....++|+||+...++.+. ++.|+++|+.+++..... .+..+ .....++
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i----------------------------~l~~~-~fgeGi~ 72 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH----------------------------KMDDS-YFGEGLT 72 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE----------------------------ECCTT-CCEEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE----------------------------ecCCC-cceEEEE
Confidence 4689999998754444433 579999999888655311 11111 1112344
Q ss_pred EecCCCEEEEEe-cCCeEEEEecCCCceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC-
Q 040987 361 FSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL- 437 (762)
Q Consensus 361 ~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~- 437 (762)
+. ++.|+.+. .++.+.++|..+.+.......+ .. ...+++||+.++++..++.+.++|..+.+.+..+.-...
T Consensus 73 ~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~ 148 (266)
T 2iwa_A 73 LL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNG 148 (266)
T ss_dssp EE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred Ee--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCC
Confidence 43 55555544 5689999999998875433222 21 233556888888887888999999999888887764321
Q ss_pred -CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc---cCCCCcceeEEEEEEecCCCeE
Q 040987 438 -PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH---QPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 438 -~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~g~~l 513 (762)
+. ..+..+.|. +++..+....++.|.+.|..+++.+..+....... ............++|+|+++.+
T Consensus 149 ~p~-------~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l 220 (266)
T 2iwa_A 149 HRV-------IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI 220 (266)
T ss_dssp EEC-------CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred ccc-------ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence 11 235678888 77655555567899999999999888887531100 0000002457899999999877
Q ss_pred EEEeeeccccCCCceeEEEEEEecCC
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
.+++. ....+.+.++...
T Consensus 221 fVTgk--------~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 221 FVTGK--------LWPKLFEIKLHLV 238 (266)
T ss_dssp EEEET--------TCSEEEEEEEEEC
T ss_pred EEECC--------CCCeEEEEEEecc
Confidence 66653 5667877777654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.91 E-value=2.1e-07 Score=86.44 Aligned_cols=188 Identities=9% Similarity=0.060 Sum_probs=128.2
Q ss_pred CceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|+ ++.++.+.+.+| .|+.+|+.+++.+.++...... ....+++ ++..|.....
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~---------FgeGit~--~g~~ly~ltw------ 104 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY---------FGEGISD--WKDKIVGLTW------ 104 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC---------CEEEEEE--ETTEEEEEES------
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc---------ceeEEEE--eCCEEEEEEe------
Confidence 355789998 676666666655 8999999999988877653221 1222333 4556655543
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++.+.+||..+.+.+.++.. .++ ...+++|++.|+.+..++.|.++|..+.+....++ . ...
T Consensus 105 --~~~~v~v~D~~t~~~~~ti~~---~~e------G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~-----V-~~~ 167 (262)
T 3nol_A 105 --KNGLGFVWNIRNLRQVRSFNY---DGE------GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT-----V-TAH 167 (262)
T ss_dssp --SSSEEEEEETTTCCEEEEEEC---SSC------CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE-----C-EET
T ss_pred --eCCEEEEEECccCcEEEEEEC---CCC------ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE-----e-ccC
Confidence 678999999999988877753 222 12334577877777667789999999887766552 0 000
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------cCceeEEEEeCCCCEEEEEEcC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------LTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------~~~v~~~~~s~dg~~l~s~~~d 670 (762)
...-..++.+.|. +|++.+..- +..|.+.|.++|+.+..+... ..-.+.++|+|+++.|+.++..
T Consensus 168 g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 168 GEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred CccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 0112445567886 777655554 789999999999998887532 1235889999998888888754
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7.5e-07 Score=95.68 Aligned_cols=276 Identities=11% Similarity=0.029 Sum_probs=156.8
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCC-----CeE-EEEeCCCCCeEEEEe------cCCcEEEEEcCCceEEEEEccC
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGS-----PLL-YFTESPDPSLSSISC------ADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~v~-~~~~s~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
|+.++.|+.|..+|.++|+.+....... .+. ...+ .++ .+++++ .++.|+.+|..+|+.+..+...
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 7888889999999999999853322111 111 1111 134 455554 3789999999999998887643
Q ss_pred CCCCC--------C--C-----------------CcccCce-eeEEEeCCCCEEEEeecC----------------ceEE
Q 040987 436 KLPCP--------L--P-----------------EEYKGLC-RDIAFNHDGGLVALRAEN----------------YCIH 471 (762)
Q Consensus 436 ~~~~~--------~--~-----------------~~~~~~v-~~~~~s~~~~~l~~~~~d----------------g~i~ 471 (762)
..... . + ......+ ..+++.++..+++.++.+ +.|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 21100 0 0 0000001 245777877788877655 3799
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe-cCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS-QDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
.+|..+++....++......-..+....++. +... .+| +.++.++ .++.+.++|..+++.+.....
T Consensus 282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~---------~~G~l~~lD~~tG~~lw~~~~ 351 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPD---------RNGIVYTLDRTDGALVSANKL 351 (599)
T ss_dssp EEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEEC---------TTSEEEEEETTTCCEEEEEES
T ss_pred EEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEEC---------CCcEEEEEECCCCCEeecccc
Confidence 9999999888776543221000000011111 2222 567 4566666 789999999999988766542
Q ss_pred Ee-------ec-CCCCC--------------------------ceEEEEEcCCCCeEEEEe-------------------
Q 040987 548 IV-------YE-PHRDA--------------------------GISAVAFHPNRRAAVSSS------------------- 574 (762)
Q Consensus 548 ~~-------~~-~h~~~--------------------------~v~~~~~spd~~~l~~~~------------------- 574 (762)
.. .. .. .. .-..++++|+..++++..
T Consensus 352 ~~~~~~~~~~~~~~-g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 352 DDTVNVFKSVDLKT-GQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp STTCCSEEEECTTT-CCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cCCcccccccccCC-CceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcc
Confidence 10 00 00 00 012456777766655432
Q ss_pred --------------------CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEE
Q 040987 575 --------------------YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITL 633 (762)
Q Consensus 575 --------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~i 633 (762)
.+|.+..||+.+++.+ |..... .+...-.....+.+++.++ |+.++.
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~-------W~~~~~-----~~~~~g~~~tagg~vf~gt~dg~l~A 498 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYK-------WEKMER-----FAVWGGTMATAGDLVFYGTLDGYLKA 498 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEE-------EEEEES-----SCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEE-------eEecCC-----CCccCcceEecCCEEEEECCCCeEEE
Confidence 2356777777766553 322211 1111111223566777787 999999
Q ss_pred EeCCCCeEEEEeccccCc-eeEEEEeCCCCE-EEEEE
Q 040987 634 WDPDRNVLVAVIGETLTP-IMNMSFVGSSEY-LVATS 668 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~-v~~~~~s~dg~~-l~s~~ 668 (762)
||.++|+++-.++-.... ..-+.+..||+. +++.+
T Consensus 499 ~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~ 535 (599)
T 1w6s_A 499 RDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYY 535 (599)
T ss_dssp EETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred EECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEc
Confidence 999999999877543322 233566678874 44443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=6.7e-07 Score=96.34 Aligned_cols=313 Identities=12% Similarity=0.038 Sum_probs=180.1
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCCCCCe----------EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPL----------LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v----------~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
..++.++.++.|..+|.++|+.+......... ..+++ .+..+++++.++.+..+|..+|+.+......
T Consensus 69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 35555555445999999999885322211110 11122 3567788889999999999999998876543
Q ss_pred CCCCCCCCcccCce-eeEEEeC---CCC-EEEEeec------CceEEEEEcCCCCceeeEEeeccccc------------
Q 040987 436 KLPCPLPEEYKGLC-RDIAFNH---DGG-LVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQ------------ 492 (762)
Q Consensus 436 ~~~~~~~~~~~~~v-~~~~~s~---~~~-~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~------------ 492 (762)
..... ..+ ....+.. +++ .+++++. ++.|+-+|..+++.+...........
T Consensus 147 ~~~~~------~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~ 220 (582)
T 1flg_A 147 DHGAG------YTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD 220 (582)
T ss_dssp CGGGT------CBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred CCCcC------cccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence 21000 011 1112222 233 5666543 78999999999998876543100000
Q ss_pred ------CCC-------------CcceeEEEEEEecCCCeEEEEeeeccc--------cC-------CCceeEEEEEEecC
Q 040987 493 ------PGD-------------DVTVVVTLVALSQDGSLMSTVDIKLAE--------EG-------IGSLVCLKFWVSGT 538 (762)
Q Consensus 493 ------~~~-------------~~~~~v~~~~~sp~g~~l~~~~~~~~~--------~~-------~~~d~~i~iwd~~~ 538 (762)
+.+ .....-..++++|+...+..+..+... .+ ....+.|..+|..+
T Consensus 221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T 300 (582)
T 1flg_A 221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS 300 (582)
T ss_dssp TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence 000 000001245777877777766532100 00 00126899999999
Q ss_pred CCceeEEEEEeecCCCC--------CceEEEEEc-CCCC---eEEEEeCCCcEEEEEcccccccccccCC---ceeeeee
Q 040987 539 QNKEFTLSTIVYEPHRD--------AGISAVAFH-PNRR---AAVSSSYGGDFKVWICNDELQQKDLQSS---GWSCHAV 603 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~--------~~v~~~~~s-pd~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~~~~ 603 (762)
++..+..+. .+| . ..+. +... .+|+ .++.++.+|.++++|..+++.+-..+.. .|.....
T Consensus 301 G~~~W~~q~---~~~-d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~ 375 (582)
T 1flg_A 301 GEVKWFYQH---TPN-DAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHID 375 (582)
T ss_dssp CCEEEEEES---STT-CCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEEC
T ss_pred CCEEEEEeC---CCC-CcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcccccccc
Confidence 999887753 222 1 1111 1221 4674 7888999999999999998876543211 1111000
Q ss_pred -----------------------------cccC--CCCeEEEEEcCCCcEEEEE--------------------------
Q 040987 604 -----------------------------GSYK--KKAMTAAAFSADGSVLAVA-------------------------- 626 (762)
Q Consensus 604 -----------------------------~~~~--~~~i~~~~~s~dg~~la~~-------------------------- 626 (762)
.... ...-..++++|+..++.+.
T Consensus 376 ~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~ 455 (582)
T 1flg_A 376 LKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGF 455 (582)
T ss_dssp TTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred ccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccce
Confidence 0000 0001245677765554432
Q ss_pred -------c-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 627 -------A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 627 -------~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
. +|.|..||+.+|+.+-....+ .++..-.....+.+++.++.|+. ++.||.++|+++|++.....
T Consensus 456 ~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~~~tagglvf~g~~dg~--l~A~D~~tG~~lW~~~~~~g 528 (582)
T 1flg_A 456 RIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGY--FKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred eecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccceEeCCCEEEEECCCCc--EEEEECCCCCEEEEecCCCC
Confidence 1 478999999999887766533 23332222334667888999987 99999999999999988653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.9e-07 Score=85.33 Aligned_cols=188 Identities=11% Similarity=0.051 Sum_probs=129.0
Q ss_pred eEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccC
Q 040987 357 SVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 357 ~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
..+.|+ ++.+..+.+.+|.|+.+|+++++..... .+.........++++.|+.. -.++.+.+||..+++.+.++...
T Consensus 58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~ 135 (268)
T 3nok_A 58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYS 135 (268)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECS
T ss_pred ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCC
Confidence 678887 4566677778889999999999986544 44444442233345555554 35889999999999999998753
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~ 515 (762)
. .-..+ ++|++.|+.+..++.|.++|..+.+....+.....+.. -..++.+.|. +|+..+.
T Consensus 136 ~-----------eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~-----v~~lNeLe~~-dG~lyan 196 (268)
T 3nok_A 136 G-----------EGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP-----VELINELECA-NGVIYAN 196 (268)
T ss_dssp S-----------CCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TTEEEEE
T ss_pred C-----------ceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc-----cccccccEEe-CCEEEEE
Confidence 2 11333 46678888777789999999999998888776543210 1235667776 7765554
Q ss_pred EeeeccccCCCceeEEEEEEecCCCceeEEEEEeec-------CCCCCceEEEEEcCCCCeEEEEe
Q 040987 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE-------PHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 516 ~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-------~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
.- ....|.+.|..+++....+....+. .....-.+.++++|+++.|+..+
T Consensus 197 vw---------~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 197 IW---------HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp ET---------TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EC---------CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 43 5679999999999887776542110 11134668999999877666554
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-07 Score=81.45 Aligned_cols=191 Identities=9% Similarity=0.039 Sum_probs=128.9
Q ss_pred ceeEEEEecCCCEEEEEecC--CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKE--GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~ 431 (762)
-...+.|+. +.+..+.+.+ ..|+.+|+++++.......+.........++++.|+.. -.++.+.+||..+.+.+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~t 100 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRAR 100 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence 355788875 5555666664 48999999999987655545444433333445555554 3588999999999999999
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+.... ....+++|++.|+++..++.|.++|..+.+...++.....+.. -..++.+.+. +|+
T Consensus 101 i~~~~-------------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~-----~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 101 FRYPG-------------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRP-----LDNLNELEWV-NGE 161 (243)
T ss_dssp EECSS-------------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEE-----CCCEEEEEEE-TTE
T ss_pred EeCCC-------------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcc-----cccceeeEEe-CCE
Confidence 87532 2234446777777777788999999999988888776543210 1235566665 676
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC-------CCCCceEEEEEcCCCCeEEEEe
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP-------HRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~-------h~~~~v~~~~~spd~~~l~~~~ 574 (762)
..+..- ....|.+.|..+++....+...-+.+ ....-.+.++++|+++.|+..+
T Consensus 162 lyanvw---------~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVW---------LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEET---------TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEEC---------CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 555443 55689999999998877765421111 1124568999999877666655
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-06 Score=91.99 Aligned_cols=280 Identities=9% Similarity=0.032 Sum_probs=159.0
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCC-----CeE---EEEe-CCCCC-eEEEEec------CCcEEEEEcCCceE
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS-----PLL---YFTE-SPDPS-LSSISCA------DNQVHLLKMPSMEI 428 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~-----~v~---~~~~-s~~~~-~l~~~~~------d~~i~i~d~~~~~~ 428 (762)
+..++.++.++.|..+|.++|+.+....... .+. .+.= ..+|+ .++++.. ++.|..+|..+|+.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 4577788889999999999999853221111 010 1111 11233 5555543 78999999999998
Q ss_pred EEEEccCCCCC--------------CC---C-C-------------cccCceeeEEEeCCCCEEEEeec-----------
Q 040987 429 IRSISGIKLPC--------------PL---P-E-------------EYKGLCRDIAFNHDGGLVALRAE----------- 466 (762)
Q Consensus 429 ~~~~~~~~~~~--------------~~---~-~-------------~~~~~v~~~~~s~~~~~l~~~~~----------- 466 (762)
+.......... .. + + .....-..++++|+..+++++..
T Consensus 197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~ 276 (582)
T 1flg_A 197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART 276 (582)
T ss_dssp EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence 87654321000 00 0 0 00001134678888777777663
Q ss_pred ---------C----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe-cCCC---eEEEEeeeccccCCCcee
Q 040987 467 ---------N----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS-QDGS---LMSTVDIKLAEEGIGSLV 529 (762)
Q Consensus 467 ---------d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~---~l~~~~~~~~~~~~~~d~ 529 (762)
| +.|..+|..+++.....+......-.......++. +... .+|+ .++.++ .++
T Consensus 277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~---------~~G 346 (582)
T 1flg_A 277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHAD---------RNG 346 (582)
T ss_dssp CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEEC---------TTS
T ss_pred cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEEC---------CCc
Confidence 2 58999999999988776543211000000011111 1222 4674 667776 889
Q ss_pred EEEEEEecCCCceeEEEEEe-------e-------------cC--------CCCC-----------ceEEEEEcCCCCeE
Q 040987 530 CLKFWVSGTQNKEFTLSTIV-------Y-------------EP--------HRDA-----------GISAVAFHPNRRAA 570 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~-------~-------------~~--------h~~~-----------~v~~~~~spd~~~l 570 (762)
.++++|..+++.+....... . .+ .... .-..++++|+..++
T Consensus 347 ~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~ 426 (582)
T 1flg_A 347 FFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLF 426 (582)
T ss_dssp EEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCE
T ss_pred eEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEE
Confidence 99999999998776553210 0 00 0000 01135677766655
Q ss_pred EEEe---------------------------------CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc
Q 040987 571 VSSS---------------------------------YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS 617 (762)
Q Consensus 571 ~~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 617 (762)
++.. .+|.|..||+.+++.+-.. .... .+..-...
T Consensus 427 yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~-------~~~~-----~~~~g~~~ 494 (582)
T 1flg_A 427 YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEH-------KEHL-----PLWAGVLA 494 (582)
T ss_dssp EEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEE-------EESS-----CCCSCCEE
T ss_pred EEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEe-------cCCC-----CCcccceE
Confidence 5433 2467888888888764332 2111 11111112
Q ss_pred CCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCce-eEEEEeCCCCEEEE
Q 040987 618 ADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPI-MNMSFVGSSEYLVA 666 (762)
Q Consensus 618 ~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v-~~~~~s~dg~~l~s 666 (762)
..+.++++++ |+.++.||.++|+.+-.++...... .-+.|..||+..++
T Consensus 495 tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 2466777787 9999999999999998886543322 23677788874444
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.78 E-value=5.9e-07 Score=83.30 Aligned_cols=186 Identities=13% Similarity=0.082 Sum_probs=127.2
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.....+.|+. +.++.+.+.+|.|+.+|+.+++.+.++ .... .....+++ +++.|.....
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~---------~FgeGit~--~g~~Ly~ltw-------- 113 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGN---------IFAEGLAS--DGERLYQLTW-------- 113 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTT---------CCEEEEEE--CSSCEEEEES--------
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCC---------cceeEEEE--eCCEEEEEEc--------
Confidence 3457888884 566777778889999999999998887 3321 11223444 4555555543
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.++.+.+||..+.+.+.++.. .++ . ..++ +|++.|+.+..++.|.++|..+.+....++ . .....
T Consensus 114 ~~~~v~V~D~~Tl~~~~ti~~---~~e-G---wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~-----V-~~~g~ 178 (268)
T 3nok_A 114 TEGLLFTWSGMPPQRERTTRY---SGE-G---WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQ-----V-KLRGQ 178 (268)
T ss_dssp SSCEEEEEETTTTEEEEEEEC---SSC-C---CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEE-----C-EETTE
T ss_pred cCCEEEEEECCcCcEEEEEeC---CCc-e---eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEE-----e-CCCCc
Confidence 678999999999988877753 222 1 2333 578888877778899999999887766552 0 00111
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc-------------cCceeEEEEeCCCCEEEEEEc
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET-------------LTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~-------------~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.-..++.+.|. +|++.+... +..|.+.|.++|+.+..+.-. .+-.+.++|+|+++.|+.++.
T Consensus 179 ~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 179 PVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred ccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 12345678887 777655554 789999999999998877532 123688999998777777654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-06 Score=82.98 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=147.5
Q ss_pred cCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEE
Q 040987 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIF 361 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 361 (762)
....+++|+++++++.++..++.|..|+..++............ .. .. .++............+..+++
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~----~~---~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYW----NK----AF---CENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTC----CH----HH---HTTCCCGGGHHHHCCEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccc----cc----cc---cccccchhccccCCCCceEEE
Confidence 35668899999987778888899999987654321100000000 00 00 000000000011235788999
Q ss_pred ec-CCCEEEEEecCCeEEEEecCCCceeccCC-----CCCCeEEEEeCC-CCCeEEEEec-----------------CCc
Q 040987 362 SS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPR-----IGSPLLYFTESP-DPSLSSISCA-----------------DNQ 417 (762)
Q Consensus 362 s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~-~~~~l~~~~~-----------------d~~ 417 (762)
.+ ++ .|+.+...+.|..+|..+++...+.. .......+++.+ +|++.++-.. .+.
T Consensus 88 ~~~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 88 NLQNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp ETTTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred cCCCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 97 55 45555555568888887664422211 113467899999 8876665422 267
Q ss_pred EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCc--eeeEEeecccccCC
Q 040987 418 VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRG--ISEVQVCERNHQPG 494 (762)
Q Consensus 418 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~ 494 (762)
+..||..+++........ .....++++|+++.|.++ +.++.|..|++..... ...+.. .
T Consensus 167 v~~~d~~~~~~~~~~~~~-----------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~----~--- 228 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKEL-----------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK----I--- 228 (322)
T ss_dssp EEEEETTTTEEEEEEEEE-----------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE----C---
T ss_pred EEEEeCCCCEEEEeccCC-----------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe----C---
Confidence 888888776654332221 234679999999866655 5568899999875321 111111 0
Q ss_pred CCcceeEEEEEEecCCCeEEEEeee-ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE
Q 040987 495 DDVTVVVTLVALSQDGSLMSTVDIK-LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS 573 (762)
Q Consensus 495 ~~~~~~v~~~~~sp~g~~l~~~~~~-~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~ 573 (762)
.. ...++++++|++.++.... ......+..+.|..+|.. ++....+... .+.....++++++ .+++++++.
T Consensus 229 ---~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~--~g~~~~~~~~~~~-~~g~L~v~~ 300 (322)
T 2fp8_A 229 ---PN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP--PPFAGEHFEQIQE-HDGLLYIGT 300 (322)
T ss_dssp ---SS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--TTTTTSCCCEEEE-ETTEEEEEC
T ss_pred ---CC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--CCCccccceEEEE-eCCEEEEee
Confidence 22 6778999999876665410 000000014567777764 4433333210 1110134666666 466666665
Q ss_pred eCCCcEEEEEccc
Q 040987 574 SYGGDFKVWICND 586 (762)
Q Consensus 574 ~~dg~i~iwd~~~ 586 (762)
...+.|..+++..
T Consensus 301 ~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 301 LFHGSVGILVYDK 313 (322)
T ss_dssp SSCSEEEEEEC--
T ss_pred cCCCceEEEeccc
Confidence 5677899988753
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5e-06 Score=82.92 Aligned_cols=258 Identities=10% Similarity=0.014 Sum_probs=145.8
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCC----------CCCcccCceeeEEEeC-CCCEEEEe
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP----------LPEEYKGLCRDIAFNH-DGGLVALR 464 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~-~~~~l~~~ 464 (762)
....+++++++++++++..++.|..|+..+++.. .+........ ........+..+++.+ +++ |+++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~ 97 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV 97 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence 3456889999998888888999999998765433 2211000000 0000013467899998 665 4444
Q ss_pred ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeec-cc-------cCCCceeEEEEEE
Q 040987 465 AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKL-AE-------EGIGSLVCLKFWV 535 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~-~~-------~~~~~d~~i~iwd 535 (762)
...+.+..+|..++.. ..+.....+. .......+++.+ +|++.++..... .. ......+.|..||
T Consensus 98 d~~~~i~~~d~~~g~~-~~~~~~~~~~-----~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 98 DCYYHLSVVGSEGGHA-TQLATSVDGV-----PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp ETTTEEEEECTTCEEC-EEEESEETTE-----ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred ECCCCEEEEeCCCCEE-EEecccCCCC-----cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444588888765432 2221111100 023467899999 998766643100 00 0000247788888
Q ss_pred ecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 536 SGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 536 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
..+++....... ......++++|+++.|+.+ ...+.|.+|++...... . ....... .. ...+
T Consensus 172 ~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~-~-----~~~~~~~---~g-P~gi 234 (322)
T 2fp8_A 172 PSTKETTLLLKE-------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKG-T-----AEVLVKI---PN-PGNI 234 (322)
T ss_dssp TTTTEEEEEEEE-------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTT-C-----EEEEEEC---SS-EEEE
T ss_pred CCCCEEEEeccC-------CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCC-c-----cceEEeC---CC-CCCe
Confidence 776643222211 1234579999999866555 45678999998753211 0 0111111 12 6789
Q ss_pred EEcCCCcEEEEEc-----------CCeEEEEeCCCCeEEEEecccc----CceeEEEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 615 AFSADGSVLAVAA-----------ETVITLWDPDRNVLVAVIGETL----TPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 615 ~~s~dg~~la~~~-----------d~~i~iwd~~~~~~~~~l~~~~----~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++.++|++.++.. .+.|..+|.+ ++.+..+.... ..+..+++ .++++.++....+. |..++
T Consensus 235 ~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~--i~~~~ 310 (322)
T 2fp8_A 235 KRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGS--VGILV 310 (322)
T ss_dssp EECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSE--EEEEE
T ss_pred EECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCc--eEEEe
Confidence 9999998665543 2568888875 77776665432 34666776 35554444444444 88888
Q ss_pred CCC
Q 040987 680 MSK 682 (762)
Q Consensus 680 ~~~ 682 (762)
+..
T Consensus 311 ~~~ 313 (322)
T 2fp8_A 311 YDK 313 (322)
T ss_dssp C--
T ss_pred ccc
Confidence 764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.7e-06 Score=79.65 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=126.2
Q ss_pred CceeeEEEeCCCCEEEEeecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 447 GLCRDIAFNHDGGLVALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+.|++ +.++.+.+.. ..|+.+|+.+++...++......+ -..+++ ++..|.....
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f---------geGi~~--~~~~ly~ltw------ 82 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF---------GAGIVA--WRDRLIQLTW------ 82 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC---------EEEEEE--ETTEEEEEES------
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc---------eeEEEE--eCCEEEEEEe------
Confidence 4677899987 4555555554 489999999999888776543211 123333 3555555543
Q ss_pred CCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeec
Q 040987 525 IGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVG 604 (762)
Q Consensus 525 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 604 (762)
.++.+.+||..+.+.+.++.. .++ . ..+ .+|++.|+.+..++.|.++|..+.+....++ .. ..
T Consensus 83 --~~~~v~v~D~~tl~~~~ti~~---~~~---G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~-----V~-~~ 145 (243)
T 3mbr_X 83 --RNHEGFVYDLATLTPRARFRY---PGE---G-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK-----VT-AG 145 (243)
T ss_dssp --SSSEEEEEETTTTEEEEEEEC---SSC---C-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEE-----CE-ET
T ss_pred --eCCEEEEEECCcCcEEEEEeC---CCC---c-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEE-----Ec-cC
Confidence 678999999999988777753 222 1 233 3577777777778899999999887766552 00 00
Q ss_pred ccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------c-CceeEEEEeCCCCEEEEEEcC
Q 040987 605 SYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------L-TPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 605 ~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------~-~~v~~~~~s~dg~~l~s~~~d 670 (762)
...-..++.+.+. +|++.+..- +..|.+.|.++|+.+..+.-. . .-.+.++++|+++.|+..+.-
T Consensus 146 g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 146 GRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp TEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred CcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence 0112355667775 777665554 789999999999998877522 1 235889999988888877653
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-05 Score=78.13 Aligned_cols=236 Identities=11% Similarity=0.025 Sum_probs=139.7
Q ss_pred cceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCceEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSMEIIRS 431 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~~~~~~ 431 (762)
.....++|+++|+.+++-..++.|..||.+.... ...........++++++|+++++....+ .|..++..+++....
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~ 110 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL 110 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence 4567899999998666665778999999876433 2233345688999999999655543332 477778777765433
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCc-eeeEEeecccccCCCCcceeEEEEEEecCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRG-ISEVQVCERNHQPGDDVTVVVTLVALSQDG 510 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g 510 (762)
...... .....++..+++..+++-..++.|+.+|..++.. +............... ......+ +|++
T Consensus 111 ~~~~~~---------~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~-~~~pngi--s~dg 178 (306)
T 2p4o_A 111 LTLPDA---------IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESV-FPAANGL--KRFG 178 (306)
T ss_dssp EECTTC---------SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCC-SCSEEEE--EEET
T ss_pred EeCCCc---------cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCC-CCcCCCc--CcCC
Confidence 321110 2234455556555455544678899999765421 1100000000000000 1223445 8899
Q ss_pred CeEEEEeeeccccCCCceeEEEEEEecC-CCc--eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 511 SLMSTVDIKLAEEGIGSLVCLKFWVSGT-QNK--EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 511 ~~l~~~~~~~~~~~~~~d~~i~iwd~~~-~~~--~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
++|.++.. ..+.|..|++.. +.. ...+.. ......++++++|+++++....+.|.++|.. +
T Consensus 179 ~~lyv~d~--------~~~~I~~~~~~~~g~~~~~~~~~~-------~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G 242 (306)
T 2p4o_A 179 NFLYVSNT--------EKMLLLRIPVDSTDKPGEPEIFVE-------QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-R 242 (306)
T ss_dssp TEEEEEET--------TTTEEEEEEBCTTSCBCCCEEEEE-------SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-C
T ss_pred CEEEEEeC--------CCCEEEEEEeCCCCCCCccEEEec-------cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-C
Confidence 87777753 567999999875 221 111111 1234568999999887777667889999875 3
Q ss_pred cccccccCCceeeeeecccCCCCeEEEEEc---CCCcEEEEEc
Q 040987 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFS---ADGSVLAVAA 627 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s---~dg~~la~~~ 627 (762)
+..... .........++++|. ||++.|.+++
T Consensus 243 ~~~~~~---------~~~~~~~~p~~~a~~g~~~d~~~LyVt~ 276 (306)
T 2p4o_A 243 STTIIA---------QAEQGVIGSTAVAFGQTEGDCTAIYVVT 276 (306)
T ss_dssp CEEEEE---------CGGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred CEEEEe---------ecccccCCceEEEEecccCCCCEEEEEC
Confidence 331110 001123568899998 8988777664
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-05 Score=79.00 Aligned_cols=233 Identities=9% Similarity=0.032 Sum_probs=136.2
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--ceEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN--YCIHF 472 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~i 472 (762)
.....++|+++++++++-..++.|..||.... ....+.. . .....++++++|+++++.... ..|..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~-~----------~~p~gia~~~dG~l~vad~~~~~~~v~~ 99 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATV-E----------GKVSGLAFTSNGDLVATGWNADSIPVVS 99 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEEC-S----------SEEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeC-C----------CCceeEEEcCCCcEEEEeccCCcceEEE
Confidence 45678999999986666557889999988753 3333322 1 467889999999966554332 24777
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-eeEEEEE---
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-EFTLSTI--- 548 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-~~~~~~~--- 548 (762)
+|..+++.. .+..... ......++..+++..+++.. ..+.|.++|..+++. .......
T Consensus 100 ~d~~~g~~~-~~~~~~~--------~~~~~g~~~~~~~~~~v~d~---------~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 100 LVKSDGTVE-TLLTLPD--------AIFLNGITPLSDTQYLTADS---------YRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp EECTTSCEE-EEEECTT--------CSCEEEEEESSSSEEEEEET---------TTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred EcCCCCeEE-EEEeCCC--------ccccCcccccCCCcEEEEEC---------CCCeEEEEeCCCCcEeEEEECCcccc
Confidence 777766532 2211111 11234444555554444432 457888888765421 1100000
Q ss_pred -eecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccc-ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 549 -VYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICND-ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 549 -~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
...+. ....+.+ +||++.|+.+. ..+.|..+++.. +.. ... ..... ......++++++|++.++
T Consensus 162 ~~~~~~-~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~-----~~~~~----~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 162 SNSESV-FPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEP-----EIFVE----QTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp SSTTCC-SCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCC-----EEEEE----SCCCSSEEEBTTCCEEEE
T ss_pred ccccCC-CCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-Ccc-----EEEec----cCCCCCeEECCCCCEEEE
Confidence 00011 1234455 78887665554 567899999875 221 110 00000 134567899999987665
Q ss_pred Ec-CCeEEEEeCCCCeEEE--EeccccCceeEEEEe---CCCCEEEEEEcCC
Q 040987 626 AA-ETVITLWDPDRNVLVA--VIGETLTPIMNMSFV---GSSEYLVATSWGS 671 (762)
Q Consensus 626 ~~-d~~i~iwd~~~~~~~~--~l~~~~~~v~~~~~s---~dg~~l~s~~~d~ 671 (762)
.. .+.|.++|.+ |+... .+........+++|. ||++.|+.++..+
T Consensus 229 ~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 229 THIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp CBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred eCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 55 7899999986 65532 343333558899999 8988888776654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.62 E-value=4.9e-06 Score=91.90 Aligned_cols=292 Identities=10% Similarity=0.063 Sum_probs=158.4
Q ss_pred EEEEcC-CCcEEEEeecCC-----------eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-cc
Q 040987 286 VLAFHP-TQRIVAAGDVTG-----------RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WH 352 (762)
Q Consensus 286 ~~~~sp-~~~~l~~~~~dg-----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h 352 (762)
++++.+ +++.++.|+.+. .+.+||..+++... +..+. .+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----------------------------~~~~~~~~ 241 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----------------------------RTVTVTKH 241 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----------------------------CEEEECSC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe----------------------------CcccCCCC
Confidence 566777 888888886542 57888887664221 11221 12
Q ss_pred ccceeEEEEecCCCEEEEEec-CCeEEEEecCCCceeccCCCCC--CeEEEEeCCCCCeEEEEe-cC-----CcEEEEEc
Q 040987 353 PSEVSVLIFSSDGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIGS--PLLYFTESPDPSLSSISC-AD-----NQVHLLKM 423 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~-~d-----~~i~i~d~ 423 (762)
.....++++..+++.++.|+. +..+.+||..+.+......... .-.+++..++++.++.|+ .+ ..+.+||.
T Consensus 242 ~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 242 DMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp CCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEET
T ss_pred CCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCC
Confidence 223345677889999999884 4689999999887755433322 223455667999999988 33 56999999
Q ss_pred CCceEEEEEccCC-CCCCCCCcccCceeeEEEeCCCCEEEEeecCc---------eEEEEEcCCCCceeeEEeeccc--c
Q 040987 424 PSMEIIRSISGIK-LPCPLPEEYKGLCRDIAFNHDGGLVALRAENY---------CIHFYSLLDDRGISEVQVCERN--H 491 (762)
Q Consensus 424 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------~i~i~d~~~~~~~~~~~~~~~~--~ 491 (762)
.+.+-.. +.... .+..... ....+..+++.++.++.+| .+..||..+..-.......... .
T Consensus 322 ~t~~W~~-~~~~~~~p~~~~~------~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~ 394 (656)
T 1k3i_A 322 SSKTWTS-LPNAKVNPMLTAD------KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGV 394 (656)
T ss_dssp TTTEEEE-ETTSCSGGGCCCC------TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEE
T ss_pred CCCccee-CCCcccccccccc------ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccccccc
Confidence 8765433 21100 0000000 0011224455555555443 5678888776533222111000 0
Q ss_pred cCCCCcceeEEEEEEec-CCCeEEEEeeecccc--CCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 492 QPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEE--GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 492 ~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
.+. ...-.++.|.. +++.++.|+...... ....-..+.+||..+..-...... ..+. ...-.+.+..|+++
T Consensus 395 ~~~---~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~--~mp~-~R~~~~~~~l~~g~ 468 (656)
T 1k3i_A 395 APD---AMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYF-ARTFHTSVVLPDGS 468 (656)
T ss_dssp CCC---CBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSS-CCBSCEEEECTTSC
T ss_pred CCC---CCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccC--CCCC-CcccCCeEECCCCC
Confidence 000 01123444443 777888876321000 000112678888776543221100 0111 22234556778999
Q ss_pred eEEEEeCC-----------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 569 AAVSSSYG-----------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 569 ~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
+++.|+.+ ..+.+||..+.+-. ................+.|||++++.|+
T Consensus 469 i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~---------~~~~~~~~R~~hs~a~ll~dg~v~v~GG 529 (656)
T 1k3i_A 469 TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY---------KQNPNSIVRVYHSISLLLPDGRVFNGGG 529 (656)
T ss_dssp EEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE---------ECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred EEEECCcccCcCcCCCCcccceEEEcCCCCcee---------ecCCCCCccccccHhhcCCCcEEEecCC
Confidence 99999854 46889998765432 2111222223334556679999999987
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-06 Score=94.51 Aligned_cols=286 Identities=9% Similarity=-0.029 Sum_probs=157.8
Q ss_pred EEEEec-CCCEEEEEecCC-----------eEEEEecCCCceeccCC----CCCCeEEEEeCCCCCeEEEEec-CCcEEE
Q 040987 358 VLIFSS-DGAYLYSGGKEG-----------VLVVWQLDTGKKKFLPR----IGSPLLYFTESPDPSLSSISCA-DNQVHL 420 (762)
Q Consensus 358 ~~~~s~-~g~~l~s~~~dg-----------~i~~wd~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d~~i~i 420 (762)
.+++.+ +++.++.|+.+. .+.+||..+++...+.. ......++++..+++.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 556777 888888877532 58899999887644322 1223345677889999999884 458999
Q ss_pred EEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cC-----ceEEEEEcCCCCceeeEEeec-ccccC
Q 040987 421 LKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-EN-----YCIHFYSLLDDRGISEVQVCE-RNHQP 493 (762)
Q Consensus 421 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d-----g~i~i~d~~~~~~~~~~~~~~-~~~~~ 493 (762)
||..+.+-...-.-.. ...-.+++..++++.++.|+ .+ ..+.+||..+++-.. +.... ... .
T Consensus 270 yd~~t~~W~~~~~~~~---------~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~-~~~~~~~p~-~ 338 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQV---------ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPM-L 338 (656)
T ss_dssp EEGGGTEEEECCCCSS---------CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGG-C
T ss_pred ecCcCCceeECCCCCc---------cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee-CCCcccccc-c
Confidence 9998765433211110 01223556677999999988 34 468999998753111 10000 000 0
Q ss_pred CCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee----cCCCCCceEEEEEc-CCCC
Q 040987 494 GDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY----EPHRDAGISAVAFH-PNRR 568 (762)
Q Consensus 494 ~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~----~~h~~~~v~~~~~s-pd~~ 568 (762)
... ....+..+++.++.++.+......+....+..||..+............ ... ...-.++.|. .+++
T Consensus 339 ~~~-----~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~-~~~~~av~~~~~~~~ 412 (656)
T 1k3i_A 339 TAD-----KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD-AMCGNAVMYDAVKGK 412 (656)
T ss_dssp CCC-----TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCC-CBTCEEEEEETTTTE
T ss_pred ccc-----ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCC-CCCCceEeccCCCCe
Confidence 000 0012223455555553110000000235788999987764433322111 001 1123445554 3788
Q ss_pred eEEEEeCCC-----------cEEEEEcccccccccccCCceeeeeecccCCC-CeEEEEEcCCCcEEEEEc-C-------
Q 040987 569 AAVSSSYGG-----------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKK-AMTAAAFSADGSVLAVAA-E------- 628 (762)
Q Consensus 569 ~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~dg~~la~~~-d------- 628 (762)
++++|+.++ .+.+||..+..-. .......+.. .-.+++..|+|+++++|+ +
T Consensus 413 i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~---------~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~ 483 (656)
T 1k3i_A 413 ILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT---------VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFED 483 (656)
T ss_dssp EEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE---------EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred EEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee---------EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCC
Confidence 888887532 5667776654322 1110011122 223556678999999986 3
Q ss_pred ----CeEEEEeCCCCeEEE--EeccccCceeEEEEeCCCCEEEEEEc
Q 040987 629 ----TVITLWDPDRNVLVA--VIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 629 ----~~i~iwd~~~~~~~~--~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
..+.+||..+++... .+...+.......+.+||+.+++||.
T Consensus 484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 468999998876433 22222222344566799999999985
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=0.00029 Score=69.95 Aligned_cols=282 Identities=11% Similarity=0.113 Sum_probs=149.1
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEE
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLI 360 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 360 (762)
...+.++.|.+++..+++| .+|.| +.....++...... .........+..+.
T Consensus 35 ~~~~~~v~~~~~~~~~~~G-~~g~i-~~s~DgG~tW~~~~--------------------------~~~~~~~~~~~~i~ 86 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLVG-VNATL-METRDGGQTWEPRT--------------------------LVLDHSDYRFNSVS 86 (327)
T ss_dssp SSCEEEEEESSSSCEEEEE-TTTEE-EEESSTTSSCEECC--------------------------CCCSCCCCEEEEEE
T ss_pred CCcEEEEEECCCCcEEEEc-CCCeE-EEeCCCCCCCeECC--------------------------CCCCCCCccEEEEE
Confidence 3478899998877777754 56755 33344443322100 00011233577888
Q ss_pred EecCCCEEEEEecCCeEEEEecCCCce-eccC---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 361 FSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLP---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 361 ~s~~g~~l~s~~~dg~i~~wd~~~~~~-~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
|.+ + .++.++..+.|+. ..+.++. .... .++..+..+.+.+++..++++ .++.+.. ..+.++.-.......
T Consensus 87 ~~~-~-~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~ 161 (327)
T 2xbg_A 87 FQG-N-EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEA 161 (327)
T ss_dssp EET-T-EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSC
T ss_pred ecC-C-eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCC
Confidence 875 3 3444556675544 3333332 2111 233457778877777666555 4554432 222243333332211
Q ss_pred CCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 437 LPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 437 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
...+..+++.+++.+++++...+..+-.|- .+..-..+.. .. ...+..+++.++++.++.+
T Consensus 162 ---------~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~---~~------~~~~~~~~~~~~g~~~~~~ 222 (327)
T 2xbg_A 162 ---------IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR---TT------SRRLHNMGFTPDGRLWMIV 222 (327)
T ss_dssp ---------CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC---CS------SSCEEEEEECTTSCEEEEE
T ss_pred ---------CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC---CC------CCccceeEECCCCCEEEEe
Confidence 146788999999887776644433333332 1222222211 11 3457888999999877665
Q ss_pred eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCC
Q 040987 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS 596 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 596 (762)
.++.+++.+.+.++.-..+.. ....+ ...+.++++.+++..++.+. ++.+ .+..+.++
T Consensus 223 ----------~~G~~~~s~~D~G~tW~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~-------- 280 (327)
T 2xbg_A 223 ----------NGGKIAFSDPDNSENWGELLS-PLRRN-SVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQ-------- 280 (327)
T ss_dssp ----------TTTEEEEEETTEEEEECCCBC-TTSSC-CSCEEEEEESSSSCEEEEES-TTCE-EEESSTTS--------
T ss_pred ----------CCceEEEecCCCCCeeEeccC-CcccC-CcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCc--------
Confidence 446666653221211111110 00012 33588999998877766654 6666 34444443
Q ss_pred ceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 597 GWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
.|............+.++.|.++++++++|.+|.|.-++-
T Consensus 281 tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 281 TWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp SCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred ccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 3333221112235678899987887777777998877653
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.54 E-value=0.00017 Score=72.26 Aligned_cols=245 Identities=11% Similarity=-0.022 Sum_probs=148.6
Q ss_pred EEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCC
Q 040987 399 YFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLD 477 (762)
Q Consensus 399 ~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~ 477 (762)
|.+..++ .+|+.+ ....|+..++........+... ..+..++|++....|... ...+.|+.+++..
T Consensus 38 C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~-----------~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g 104 (349)
T 3v64_C 38 CKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------ENAIALDFHHRRELVFWSDVTLDRILRANLNG 104 (349)
T ss_dssp EEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred ccccccC-ceeEee-cccceEEEeCCCCeeEEeecCC-----------CceEEEEEeccccEEEEEeccCCceEEEecCC
Confidence 3344443 334433 4456888888765544444332 356889999866655544 4668899999876
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
..... +... . ......+++.+.+..|..+.. ..+.|.+.+++.......+ ... ...
T Consensus 105 ~~~~~-~~~~-~--------~~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG~~~~~l~-----~~~-l~~ 160 (349)
T 3v64_C 105 SNVEE-VVST-G--------LESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDGAHRKVLL-----WQS-LEK 160 (349)
T ss_dssp CSCEE-EECS-S--------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEE-----CTT-CSC
T ss_pred CCceE-EEeC-C--------CCCccEEEEecCCCeEEEEcC--------CCCeEEEEcCCCCceEEEE-----eCC-CCC
Confidence 54322 2111 0 223568899987666655542 5678999998765432222 222 346
Q ss_pred eEEEEEcCCCCeEEEEe-CC-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEE
Q 040987 558 ISAVAFHPNRRAAVSSS-YG-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITL 633 (762)
Q Consensus 558 v~~~~~spd~~~l~~~~-~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~i 633 (762)
...++++|.+..|+... .. +.|..+++......... .........++++|++..|..+. .+.|..
T Consensus 161 P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----------~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 161 PRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIER 229 (349)
T ss_dssp EEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred cceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-----------ECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence 78999999666555544 34 67888887654332221 11234568999999888777775 789999
Q ss_pred EeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 634 WDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 634 wd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+|++.......+.........+++. ++ .|+.+.... +.|...+..+|+....+.....
T Consensus 230 ~~~dG~~~~~~~~~~~~~P~giav~-~~-~ly~td~~~-~~V~~~~~~~G~~~~~i~~~~~ 287 (349)
T 3v64_C 230 ANLDGSHRKAVISQGLPHPFAITVF-ED-SLYWTDWHT-KSINSANKFTGKNQEIIRNKLH 287 (349)
T ss_dssp EETTSCSCEEEECSSCSSEEEEEEE-TT-EEEEEETTT-TEEEEEETTTCCSCEEEECSCS
T ss_pred EeCCCCceEEEEeCCCCCceEEEEE-CC-EEEEecCCC-CeEEEEEccCCCccEEeccCCC
Confidence 9988654333343333445678883 33 555554433 2488888778877766654443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00016 Score=72.60 Aligned_cols=254 Identities=8% Similarity=-0.099 Sum_probs=152.5
Q ss_pred eeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEcc
Q 040987 356 VSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~ 434 (762)
..+.+..+++ +|+.+. ...|+..++.......+.........++|++....|+.+. ..+.|..+++........+..
T Consensus 36 ~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred CcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 4455545543 444443 3568888888766655444455688999998776666654 467899999886554333322
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.. .....+++.+.+..| ++-...+.|.+.++..... ..+.. .. ......++++|.+..|
T Consensus 114 ~~----------~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~~l~~-~~--------l~~P~~iavdp~~g~l 173 (349)
T 3v64_C 114 GL----------ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QS--------LEKPRAIALHPMEGTI 173 (349)
T ss_dssp SC----------SCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC-TT--------CSCEEEEEEETTTTEE
T ss_pred CC----------CCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-EEEEe-CC--------CCCcceEEEecCcCeE
Confidence 11 345789999855544 4545667899999865432 22211 11 2347899999977777
Q ss_pred EEEeeeccccCCCce-eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccc
Q 040987 514 STVDIKLAEEGIGSL-VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQK 591 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d-~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~ 591 (762)
..+.. .. +.|..++++........ ... ....+.++++|++..|..+. ..+.|..+|+.......
T Consensus 174 y~td~--------~~~~~I~r~~~dG~~~~~~~-----~~~-~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~ 239 (349)
T 3v64_C 174 YWTDW--------GNTPRIEASSMDGSGRRIIA-----DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKA 239 (349)
T ss_dssp EEEEC--------SSSCEEEEEETTSCSCEESC-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred EEecc--------CCCCEEEEEeCCCCCcEEEE-----ECC-CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEE
Confidence 66653 33 78888888765432211 112 34568999998776666554 45679999987543222
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
.. .........+++ .++.+..+-. .+.|..++..+|+.+..+.........+++
T Consensus 240 ~~-----------~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 294 (349)
T 3v64_C 240 VI-----------SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 294 (349)
T ss_dssp EE-----------CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred EE-----------eCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEE
Confidence 21 112345567777 3444444433 788988887677655555433233334433
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.52 E-value=0.0001 Score=75.10 Aligned_cols=245 Identities=8% Similarity=-0.102 Sum_probs=150.3
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+|+.+. ...|+..++.......+.........++|++.+..|+.+. ..+.|..+++........+....
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~--------- 158 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL--------- 158 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC---------
T ss_pred eeEeec-CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC---------
Confidence 444443 3578888888776655545556688999998766666554 46789999988665444333221
Q ss_pred cCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccC
Q 040987 446 KGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEG 524 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~ 524 (762)
.....+++++.+..| ++-...+.|.+.++..... ..+.. .. ......++++|.+..|..+..
T Consensus 159 -~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~~l~~-~~--------l~~P~giavdp~~g~ly~td~------ 221 (386)
T 3v65_B 159 -ESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-KVLLW-QS--------LEKPRAIALHPMEGTIYWTDW------ 221 (386)
T ss_dssp -SCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-EEEEC-SS--------CSCEEEEEEETTTTEEEEEEC------
T ss_pred -CCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-EEeec-CC--------CCCCcEEEEEcCCCeEEEecc------
Confidence 345789999865544 4445567888888864432 22211 11 245789999998877777653
Q ss_pred CCce-eEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeee
Q 040987 525 IGSL-VCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 525 ~~~d-~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.. +.|..++++........ ... ....+.++++|++..|+.+. ..+.|..+|+.........
T Consensus 222 --~~~~~I~r~~~dG~~~~~~~-----~~~-~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~--------- 284 (386)
T 3v65_B 222 --GNTPRIEASSMDGSGRRIIA-----DTH-LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI--------- 284 (386)
T ss_dssp --SSSCEEEEEETTSCSCEEEE-----CSS-CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE---------
T ss_pred --CCCCEEEEEeCCCCCcEEEE-----ECC-CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE---------
Confidence 33 68888888765433222 112 33568999998766665554 4567989988654322221
Q ss_pred ecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 603 VGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 603 ~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.........+++ .++.++.+-. .+.|..++..+|+.+..+.........+++.
T Consensus 285 --~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~ 338 (386)
T 3v65_B 285 --SQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTL 338 (386)
T ss_dssp --CSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEE
T ss_pred --ECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEccCCCCCceEEEE
Confidence 112345567887 3444444444 7899999977776666665433334445443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.8e-05 Score=87.15 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=76.8
Q ss_pred CeEEEEEc-CCCcEEEEeec-C----CeEEEEeccCC-ceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 283 KLTVLAFH-PTQRIVAAGDV-T----GRILIWRGFGD-RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 283 ~v~~~~~s-p~~~~l~~~~~-d----g~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
.+...+|| |||++||.+.. + ..|+++|+.++ +.+. ..+.. .
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-----------------------------~~~~~---~ 222 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-----------------------------DKVSG---T 222 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-----------------------------CCEEE---E
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-----------------------------ccccC---c
Confidence 57889999 99999886543 2 25999999776 4221 11111 1
Q ss_pred eeEEEEecCCCEEEEEecC-----CeEEEEecCCCcee--cc--CCCCCCeEEEEeCCCCCeEEEEec---CCcEEEEEc
Q 040987 356 VSVLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKK--FL--PRIGSPLLYFTESPDPSLSSISCA---DNQVHLLKM 423 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~--~~--~~~~~~v~~~~~s~~~~~l~~~~~---d~~i~i~d~ 423 (762)
...++|+|||+.|+....+ ..|+++++.++... .+ .........+.|||||++|+.... ...|+++|+
T Consensus 223 ~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~ 302 (751)
T 2xe4_A 223 NGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDL 302 (751)
T ss_dssp CSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEES
T ss_pred eeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 3468899999988877765 36888998876421 11 122334677899999999887663 346888888
Q ss_pred CCc
Q 040987 424 PSM 426 (762)
Q Consensus 424 ~~~ 426 (762)
.++
T Consensus 303 ~~~ 305 (751)
T 2xe4_A 303 RKG 305 (751)
T ss_dssp SSC
T ss_pred CCC
Confidence 765
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00032 Score=69.27 Aligned_cols=236 Identities=8% Similarity=-0.093 Sum_probs=141.4
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCC----ceEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPS----MEIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~----~~~~~~~~~~~~~~~~ 441 (762)
+|+.+.. ..|+..|+.+.+...+.........++|++++..|+.+.. .+.|..+++.. ......+....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~----- 76 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 76 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----
T ss_pred EEEEECC-CeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCC-----
Confidence 3444433 5688999988766554444567889999987766666554 57899999875 22222222111
Q ss_pred CCcccCceeeEEEeCCCCEE-EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHDGGLV-ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++++.+..| ++-...+.|.++++.... ...+... . ......++++|.+..|..+...
T Consensus 77 -----~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~-~~~~~~~-~--------~~~P~~iavdp~~g~ly~~d~~- 140 (316)
T 1ijq_A 77 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-N--------GSKPRAIVVDPVHGFMYWTDWG- 140 (316)
T ss_dssp -----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-T--------TCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc-eEEEEEC-C--------CCCcceEEeCCCCCEEEEEccC-
Confidence 345789999755544 444567889999986433 2222211 1 2347899999977766666521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
..+.|..++++.... ..+. ... -...+.++++|++..|+.+. ..+.|..+|+..........
T Consensus 141 ------~~~~I~~~~~dG~~~-~~~~----~~~-~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~----- 203 (316)
T 1ijq_A 141 ------TPAKIKKGGLNGVDI-YSLV----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 203 (316)
T ss_dssp ------SSCEEEEEETTSCCE-EEEE----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----
T ss_pred ------CCCeEEEEcCCCCCe-EEEE----ECC-CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEee-----
Confidence 226888888765432 2221 122 34678999999877666554 45689999987533221110
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~ 646 (762)
..........+++. ++.++.+-. .+.|..++..+|+.+..+.
T Consensus 204 ----~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 204 ----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp ----CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ----cCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 11112345677774 344444444 7899999988776655554
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.3e-05 Score=79.98 Aligned_cols=253 Identities=8% Similarity=-0.030 Sum_probs=142.8
Q ss_pred ceeEEEEec-CCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecC-C----cEEEEEcCCceE
Q 040987 355 EVSVLIFSS-DGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCAD-N----QVHLLKMPSMEI 428 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-~----~i~i~d~~~~~~ 428 (762)
....++++| ++..|+.+...+.|+.+|++++....+.........++++++|+.|+++... + .+.+++.. +..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~ 216 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGF 216 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTS
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cce
Confidence 457889998 4566777766588999999887765555556678899999999977766542 1 23334432 211
Q ss_pred E--EEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 429 I--RSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 429 ~--~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
. ..+... .....++++| ++.++++-..++.|+.++...+... .+..... ......++
T Consensus 217 ~~~~~l~~~-----------~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~--------~~~P~gia 276 (430)
T 3tc9_A 217 KVITELTKG-----------QNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT-PLFTIQD--------SGWEFHIQ 276 (430)
T ss_dssp CSEEEEEEC-----------SSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE-EEEECSS--------SSCCEEEE
T ss_pred eeeeeeccC-----------CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEEEcCC--------CCcceeEE
Confidence 1 222211 3457889999 6776666667789999998765432 1111111 23467899
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc----eeEEEEE-eecCCC--------CCceE-EEEEc-------
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK----EFTLSTI-VYEPHR--------DAGIS-AVAFH------- 564 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~----~~~~~~~-~~~~h~--------~~~v~-~~~~s------- 564 (762)
|+|+|++|..+.. ..+.|..++...... ...+... -..+.. -..-. .++..
T Consensus 277 ~~pdG~~lyv~d~--------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~ 348 (430)
T 3tc9_A 277 FHPSGNYAYIVVV--------NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS 348 (430)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred EcCCCCEEEEEEC--------CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence 9999997666653 567899988774311 1111110 000000 01122 44543
Q ss_pred -CCCCeEEEEeCCCcEEEEEcccccccccccC-----Cceeee-eecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEe
Q 040987 565 -PNRRAAVSSSYGGDFKVWICNDELQQKDLQS-----SGWSCH-AVGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWD 635 (762)
Q Consensus 565 -pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd 635 (762)
++|.++++-...+.|+.++. ++........ ..+..- ......-.....++++|++..|.++ . +..|+.++
T Consensus 349 D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 427 (430)
T 3tc9_A 349 SDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG 427 (430)
T ss_dssp SCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence 34555555555677888773 3332211100 000000 0000112357899999964455555 3 78888877
Q ss_pred CC
Q 040987 636 PD 637 (762)
Q Consensus 636 ~~ 637 (762)
++
T Consensus 428 ~e 429 (430)
T 3tc9_A 428 YE 429 (430)
T ss_dssp EC
T ss_pred cC
Confidence 54
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.47 E-value=5.4e-05 Score=78.30 Aligned_cols=254 Identities=9% Similarity=-0.018 Sum_probs=144.6
Q ss_pred ceeEEEEecC--CCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC-----cEEEEEcCCce
Q 040987 355 EVSVLIFSSD--GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN-----QVHLLKMPSME 427 (762)
Q Consensus 355 ~v~~~~~s~~--g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~-----~i~i~d~~~~~ 427 (762)
....++|+|+ +..|+.+...+.|+.+|..++....+.........++++++|+ |+++...+ .+..++...+.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~ 218 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF 218 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe
Confidence 3568999984 4456666555889999998888766665566789999999999 55554422 23333322111
Q ss_pred E-EEEEccCCCCCCCCCcccCceeeEEEeC-CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE
Q 040987 428 I-IRSISGIKLPCPLPEEYKGLCRDIAFNH-DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505 (762)
Q Consensus 428 ~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 505 (762)
. ...+... .....++++| ++.++++-..++.|+.+|..++.....+..... ......++
T Consensus 219 ~~~~~~~~~-----------~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~--------~~~~~~ia 279 (433)
T 4hw6_A 219 TERLSLCNA-----------RGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT--------KGSNFHIV 279 (433)
T ss_dssp CCEEEEEEC-----------SSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC--------CSSCEEEE
T ss_pred ecccccccc-----------CCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC--------CCCcccEE
Confidence 0 0111111 3456789999 666665656778899999886654233221111 11224699
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecC--CCc--eeEEEEE-eecCC--------CCCceEEEEE---------
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT--QNK--EFTLSTI-VYEPH--------RDAGISAVAF--------- 563 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~--~~~--~~~~~~~-~~~~h--------~~~~v~~~~~--------- 563 (762)
|+|+|++|..+.. ..+.|+.++... +.. ...+... -..+. .-..-..+++
T Consensus 280 ~dpdG~~LYvad~--------~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 280 WHPTGDWAYIIYN--------GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp ECTTSSEEEEEET--------TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred EeCCCCEEEEEeC--------CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 9999997766653 567899988763 211 1111110 00000 0123567898
Q ss_pred cCCCCeEEEEeCCCcEEEEEcccccccccccCC-----ceeee-eecccCCCCeEEEEEc-CCCcEEEEEc-CCeEEEEe
Q 040987 564 HPNRRAAVSSSYGGDFKVWICNDELQQKDLQSS-----GWSCH-AVGSYKKKAMTAAAFS-ADGSVLAVAA-ETVITLWD 635 (762)
Q Consensus 564 spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~i~~~~~s-~dg~~la~~~-d~~i~iwd 635 (762)
.++|.++++-...+.|+.++. ++......... .+..- ......-.....++++ ++|.++++=. +++|+.++
T Consensus 352 d~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~ 430 (433)
T 4hw6_A 352 EDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIA 430 (433)
T ss_dssp SCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred CCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEe
Confidence 777777777667788988885 33322211000 00000 0000112346789999 5555444434 78888877
Q ss_pred CC
Q 040987 636 PD 637 (762)
Q Consensus 636 ~~ 637 (762)
++
T Consensus 431 ~e 432 (433)
T 4hw6_A 431 PE 432 (433)
T ss_dssp EC
T ss_pred cC
Confidence 64
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.46 E-value=0.0058 Score=71.01 Aligned_cols=443 Identities=12% Similarity=0.091 Sum_probs=224.5
Q ss_pred ceeecCCCEEEEEe----------CCEEEEEEcccceEEeeecCCc-cceeEEEEeCCCCcccceeeeEEeeecCCeEEE
Q 040987 79 PAFSNDVKRLLVCT----------SNTVSIFSTSTGLQISSLEGHK-APVTTVIVVPASTPATKILSYCWTASLDGTIKY 147 (762)
Q Consensus 79 ~~~s~dg~~la~~~----------~~~i~iwd~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~v 147 (762)
..|..+...|+++. .+.|++.+...+..+....... ..|...+... . +++.++ .+.+.+
T Consensus 467 ~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~-~--------~vvva~-g~~l~~ 536 (1158)
T 3ei3_A 467 MGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNS-S--------QVVVAV-GRALYY 536 (1158)
T ss_dssp TTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS-S--------EEEEEE-TTEEEE
T ss_pred ccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC-C--------EEEEEE-CCEEEE
Confidence 34555555555554 3467777766555666665433 3577666443 2 233333 578888
Q ss_pred EeCCCcceE--EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCc-cccEEEEecCCc
Q 040987 148 WDFSVPELL--KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTM-NGRICKCNLTES 224 (762)
Q Consensus 148 Wd~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-d~~i~iwd~~~~ 224 (762)
+++.+++.. ...+....+.++.+.... ....+.. +. +.|+. |++++++++.+.
T Consensus 537 fel~~~~L~~~~~~~l~~evscl~i~~~~-----~~~~~s~-~~------------------aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 537 LQIHPQELRQISHTEMEHEVACLDITPLG-----DSNGLSP-LC------------------AIGLWTDISARILKLPSF 592 (1158)
T ss_dssp EEEETTEEEEEEEEECSSCEEEEECCCCS-----SSTTCCS-EE------------------EEEETTTTEEEEEETTTC
T ss_pred EEeeCCceeeecccCCCCceEEEEeecCC-----CCccccc-EE------------------EEEECCCCEEEEEECCCC
Confidence 888766432 223333467776552210 0111111 11 44565 999999999876
Q ss_pred cccceeeeccCCCceEEEECC--CCCEEEEE-eCCeEEEEEcc--CchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 225 RLAGGVTLAEMKEPQVITISS--SGKYFGIR-KQRKLLIWKVP--DVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 225 ~~~~~~~~~~~~~v~~~~~sp--dg~~la~~-~~~~i~iwd~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
+.+..........+.++.+.. ...+|.++ .||.+.-+.++ +++.. ..+....+ ..++.-..+...+..-+.+
T Consensus 593 ~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~--d~r~~~LG-~~pv~L~~~~~~~~~~V~a 669 (1158)
T 3ei3_A 593 ELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS--DRKKVTLG-TQPTVLRTFRSLSTTNVFA 669 (1158)
T ss_dssp CEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE--EEEEEECC-SSCCEEEEEESSSCEEEEE
T ss_pred CeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc--cceeEEcC-CCceEEEEEeeCCceeEEE
Confidence 666333333333444554432 23455555 68887666554 33332 22222333 2345444454444322222
Q ss_pred ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccce-eEEEEecC--CCEEEEEecCCe
Q 040987 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEV-SVLIFSSD--GAYLYSGGKEGV 376 (762)
Q Consensus 300 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~s~~--g~~l~s~~~dg~ 376 (762)
..+.-..++.-.+.-.+. .+. ...+ ....|+.. ..-++..+ ++.
T Consensus 670 ~s~rp~liy~~~~~l~~s------------------------------~l~--~~~v~~~~~F~se~~~~g~v~~~-~~~ 716 (1158)
T 3ei3_A 670 CSDRPTVIYSSNHKLVFS------------------------------NVN--LKEVNYMCPLNSDGYPDSLALAN-NST 716 (1158)
T ss_dssp ESSSCEEEEESSSSEEEE------------------------------EBS--SSCCCEEEEECCSSSTTEEEEEC-SSC
T ss_pred ECCCCEEEEEcCCceEEe------------------------------ccC--hHHhceEeccCcccCCCcEEEEc-CCc
Confidence 234434444322110000 000 0112 22334321 12344333 345
Q ss_pred EEEEecCCCce--eccCCCCCCeEEEEeCCCCCeEEEEecC---------------------------------------
Q 040987 377 LVVWQLDTGKK--KFLPRIGSPLLYFTESPDPSLSSISCAD--------------------------------------- 415 (762)
Q Consensus 377 i~~wd~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------------------------------------- 415 (762)
+++..++..+. ......+..+..++++|+.+.++++..+
T Consensus 717 LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1158)
T 3ei3_A 717 LTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPH 796 (1158)
T ss_dssp EEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-------
T ss_pred eEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCc
Confidence 77776654322 2233345567777887776665544321
Q ss_pred ----------CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE---eCC-CCEEEEee----------cCceEE
Q 040987 416 ----------NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF---NHD-GGLVALRA----------ENYCIH 471 (762)
Q Consensus 416 ----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~-~~~l~~~~----------~dg~i~ 471 (762)
..++++|..+.+.+..+.-... ..+.+++. ..+ ..++++|+ ..|.|.
T Consensus 797 ~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~n---------E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~ 867 (1158)
T 3ei3_A 797 ETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQN---------EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIV 867 (1158)
T ss_dssp ---CCCEEEEEEEEEEETTTCCEEEEEECCTT---------EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEE
T ss_pred hhhcCCceeeEEEEEEeCCCCeEEEEEeCCCC---------cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEE
Confidence 1355666666555544432221 23444443 222 46788876 348899
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
+|++..+ .+..+....- .+.+++++-- +|++++..+ .++++|++...+... ....
T Consensus 868 vf~v~~~-kL~lv~~~~v--------~g~v~al~~~-~g~Lla~ig-----------~~l~vy~l~~~~~L~-~~~~--- 922 (1158)
T 3ei3_A 868 VFQYSDG-KLQTVAEKEV--------KGAVYSMVEF-NGKLLASIN-----------STVRLYEWTTEKELR-TECN--- 922 (1158)
T ss_dssp EEEEETT-EEEEEEEEEE--------SSCEEEEEEE-TTEEEEEET-----------TEEEEEEECTTSCEE-EEEE---
T ss_pred EEEEECC-EEEEEEEEEc--------CCcCEEEeee-CCEEEEEcC-----------CEEEEEECCCCceEE-EEee---
Confidence 9999743 2222221111 4567776643 455555443 689999998765433 2211
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc--cccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE--LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E 628 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d 628 (762)
+ -..|..+.....+++++.|..-..+.++..+.. +.... .......+++++.|-.++ .++.+. +
T Consensus 923 -~-~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~----------a~D~~~~~vta~~~ld~~-t~l~aD~~ 989 (1158)
T 3ei3_A 923 -H-YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI----------ARDFNPNWMSAVEILDDD-NFLGAENA 989 (1158)
T ss_dssp -E-CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE----------EECCSCBCEEEEEEEETT-EEEEEETT
T ss_pred -c-cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE----------EeecccccEEEEEEEccC-cEEEEcCC
Confidence 1 112332233335778888887777777665432 11111 123456788999987665 555566 8
Q ss_pred CeEEEEeCCC
Q 040987 629 TVITLWDPDR 638 (762)
Q Consensus 629 ~~i~iwd~~~ 638 (762)
|.+.+.....
T Consensus 990 gNl~vl~~~~ 999 (1158)
T 3ei3_A 990 FNLFVCQKDS 999 (1158)
T ss_dssp SEEEEEEECT
T ss_pred CcEEEEecCC
Confidence 9999886543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.8e-05 Score=75.29 Aligned_cols=237 Identities=12% Similarity=-0.014 Sum_probs=145.6
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEe
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
+|+.+ ....|+.+++........+... ..+..++|++.+..|... ...+.|+.+++...... .+..
T Consensus 89 ~l~~~-~~~~I~~i~~~~~~~~~~~~~~-----------~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~ 155 (386)
T 3v65_B 89 VLLFA-NRIDIRQVLPHRSEYTLLLNNL-----------ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVS 155 (386)
T ss_dssp EEEEE-CBSCEEEECTTSCCCEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEEC
T ss_pred eeEee-cCccceeeccCCCcEEEEecCC-----------CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEe
Confidence 34433 4567888888766554444432 457889999865555544 46688999998765422 2211
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
. . ......+++.+.+..|..... ..+.|.+.+++.......+ ... ......++++|.
T Consensus 156 ~-~--------~~~p~glavd~~~g~lY~~d~--------~~~~I~~~~~dg~~~~~l~-----~~~-l~~P~giavdp~ 212 (386)
T 3v65_B 156 T-G--------LESPGGLAVDWVHDKLYWTDS--------GTSRIEVANLDGAHRKVLL-----WQS-LEKPRAIALHPM 212 (386)
T ss_dssp S-S--------CSCCCCEEEETTTTEEEEEET--------TTTEEEECBTTSCSCEEEE-----CSS-CSCEEEEEEETT
T ss_pred C-C--------CCCccEEEEEeCCCeEEEEcC--------CCCeEEEEeCCCCceEEee-----cCC-CCCCcEEEEEcC
Confidence 1 0 123567899987666665542 5568888888755432222 222 346789999997
Q ss_pred CCeEEEEeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEE
Q 040987 567 RRAAVSSSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLV 642 (762)
Q Consensus 567 ~~~l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~ 642 (762)
+..|+.+.. . +.|..+++......... .........++|+|++..|..+. .+.|..+|++.....
T Consensus 213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~-----------~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~ 281 (386)
T 3v65_B 213 EGTIYWTDWGNTPRIEASSMDGSGRRIIA-----------DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRK 281 (386)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCE
T ss_pred CCeEEEeccCCCCEEEEEeCCCCCcEEEE-----------ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeE
Confidence 666655543 3 57888887654332221 11234568999999888777775 789999998865443
Q ss_pred EEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 643 AVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 643 ~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
..+.........+++. .+ .|+.+...+ +.|..++..+|+....+.....
T Consensus 282 ~~~~~~~~~P~giav~-~~-~ly~td~~~-~~V~~~~~~~G~~~~~i~~~~~ 330 (386)
T 3v65_B 282 AVISQGLPHPFAITVF-ED-SLYWTDWHT-KSINSANKFTGKNQEIIRNKLH 330 (386)
T ss_dssp EEECSSCSSEEEEEEE-TT-EEEEEETTT-TEEEEEETTTCCSCEEEECSCS
T ss_pred EEEECCCCCceEEEEE-CC-EEEEeeCCC-CeEEEEECCCCcceEEEccCCC
Confidence 3343333446778883 33 444444333 3499999888887776665443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-05 Score=86.36 Aligned_cols=248 Identities=9% Similarity=-0.008 Sum_probs=135.0
Q ss_pred CeEEEEeC-CCCCeEEEEecC-C----cEEEEEcCCc-eEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 396 PLLYFTES-PDPSLSSISCAD-N----QVHLLKMPSM-EIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 396 ~v~~~~~s-~~~~~l~~~~~d-~----~i~i~d~~~~-~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+...+|| |||++|+.+... | .|+++|+.++ +.+.. +. .....++|+|||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-------------~~~~~~~WspDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-------------GTNGEIVWGPDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-------------EECSCCEECSSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-------------CceeeEEEecCCCEEEEEEEC
Confidence 57789999 999998876542 2 4999999988 53210 11 223578999999988887765
Q ss_pred -----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc-
Q 040987 468 -----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK- 541 (762)
Q Consensus 468 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~- 541 (762)
..|+++++.++.....+...... ......+.|+|||++|+..... .....|.++|+.++..
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~-------~~~~~~~~~SpDg~~l~~~~~~------~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHN-------PLFSAFMYKAADTNTLCIGSQS------PETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCC-------TTCEEEEEECTTSSEEEEEEEC------SSCEEEEEEESSSCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCC-------CceEEEEEECCCCCEEEEEecC------CCCceEEEEECCCCCCC
Confidence 36888888766432222211110 2235678999999999887621 1356889999987632
Q ss_pred e--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC--C--cEEEEEcccc-cccc-cccCCceeeeeecccCCCCeEE
Q 040987 542 E--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG--G--DFKVWICNDE-LQQK-DLQSSGWSCHAVGSYKKKAMTA 613 (762)
Q Consensus 542 ~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d--g--~i~iwd~~~~-~~~~-~~~~~~~~~~~~~~~~~~~i~~ 613 (762)
. ..+ .... .....++.|+.++.+++....+ + .|..+|+.++ .... .+. ......+..
T Consensus 309 ~~~~~l----~~~~-~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~----------~~~~~~l~~ 373 (751)
T 2xe4_A 309 NTLEIV----RPRE-KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVD----------HSEDVFMES 373 (751)
T ss_dssp CCEEES----SCCC-TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEEC----------CCSSEEEEE
T ss_pred ceeEEe----ecCC-CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEEC----------CCCCcEEEE
Confidence 2 222 1222 3445556555444444444443 3 4566666542 1111 111 111123445
Q ss_pred EEEcCCCcEEEE-Ec-CCe--EEEEeC-------CCCeEEEEecccc-CceeEEEE----eCCCCE-EEEEEc-CCCCeE
Q 040987 614 AAFSADGSVLAV-AA-ETV--ITLWDP-------DRNVLVAVIGETL-TPIMNMSF----VGSSEY-LVATSW-GSKPQL 675 (762)
Q Consensus 614 ~~~s~dg~~la~-~~-d~~--i~iwd~-------~~~~~~~~l~~~~-~~v~~~~~----s~dg~~-l~s~~~-d~~~~v 675 (762)
+.+ ++..|+. .. ++. |+++++ .+++....+.-.. ..+..+.+ ++++.. +++.+. .....+
T Consensus 374 ~~~--~~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~ 451 (751)
T 2xe4_A 374 IAV--RSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTW 451 (751)
T ss_dssp EEE--CSSEEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEE
T ss_pred EEE--ECCEEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEE
Confidence 555 4555544 44 664 566675 4444123332111 11233322 446554 444333 222348
Q ss_pred EEEECCCCcee
Q 040987 676 SVWNMSKLSIS 686 (762)
Q Consensus 676 ~vwd~~~~~~~ 686 (762)
..+|+.+++..
T Consensus 452 ~~~d~~~~~~~ 462 (751)
T 2xe4_A 452 FDVSPQDHSRT 462 (751)
T ss_dssp EEECTTTCCEE
T ss_pred EEEECCCCcEE
Confidence 88888887643
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00044 Score=68.29 Aligned_cols=236 Identities=11% Similarity=-0.039 Sum_probs=141.6
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCC---Cceee
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDD---RGISE 483 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~---~~~~~ 483 (762)
+|+.+ ....|+..|+.+.+....+... ..+..++|++++..|..+ ..++.|..+++... .....
T Consensus 3 ~ll~~-~~~~I~~i~~~~~~~~~~~~~~-----------~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~ 70 (316)
T 1ijq_A 3 YLFFT-NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70 (316)
T ss_dssp EEEEE-CBSSEEEEETTSCCCEEEECSC-----------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred EEEEE-CCCeEEEEECCCcceEehhcCC-----------CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEE
Confidence 34444 4567999999887655554432 456889999876555544 45688999998752 22222
Q ss_pred EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE
Q 040987 484 VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF 563 (762)
Q Consensus 484 ~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~ 563 (762)
+.. .. ......+++++.+..|..+.. ..+.|.++++...... .+. ... ......+++
T Consensus 71 ~~~--~~-------~~~p~glavd~~~~~ly~~d~--------~~~~I~~~~~~g~~~~-~~~----~~~-~~~P~~iav 127 (316)
T 1ijq_A 71 VIS--RD-------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRK-TLF----REN-GSKPRAIVV 127 (316)
T ss_dssp EEC--SS-------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEE-EEE----ECT-TCCEEEEEE
T ss_pred EEe--CC-------CCCcCEEEEeecCCeEEEEEC--------CCCEEEEEeCCCCceE-EEE----ECC-CCCcceEEe
Confidence 111 00 123578899986666655542 5678999998754332 221 122 346789999
Q ss_pred cCCCCeEEEEeCC--CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCC
Q 040987 564 HPNRRAAVSSSYG--GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRN 639 (762)
Q Consensus 564 spd~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~ 639 (762)
+|.+..|+.+... +.|...++......... ...-.....+++++++..|..+. .+.|..+|++..
T Consensus 128 dp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~-----------~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 128 DPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp ETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE-----------ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 9976666555443 67888887543322111 11234678999999888877775 689999999854
Q ss_pred eEEEEecc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 640 VLVAVIGE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 640 ~~~~~l~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
........ .......+++.. + .|+.+...+ ++|..++..+|+....+...
T Consensus 197 ~~~~~~~~~~~~~~P~giav~~-~-~ly~~d~~~-~~V~~~~~~~g~~~~~i~~~ 248 (316)
T 1ijq_A 197 NRKTILEDEKRLAHPFSLAVFE-D-KVFWTDIIN-EAIFSANRLTGSDVNLLAEN 248 (316)
T ss_dssp SCEEEEECTTTTSSEEEEEEET-T-EEEEEETTT-TEEEEEETTTCCCCEEEECS
T ss_pred ceEEEeecCCccCCcEEEEEEC-C-EEEEEECCC-CeEEEEeCCCCcceEEEecC
Confidence 32222221 223356777753 4 455444333 35999998888876665443
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00054 Score=64.10 Aligned_cols=206 Identities=8% Similarity=0.043 Sum_probs=129.6
Q ss_pred CceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
..+..++++|++..|+ +...++.|..+|.. ++....+.... ......+++.+++.++++..
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~g~~~vs~E-------- 88 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGDNQFVISDE-------- 88 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECSTTEEEEEET--------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCCCEEEEEEC--------
Confidence 5689999999876555 46677899999997 76666654321 23477889999988766654
Q ss_pred CceeEEEEEEecCCCceeEEEEEee----cCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc---cccccccCCce
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVY----EPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE---LQQKDLQSSGW 598 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~----~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~ 598 (762)
.++.+.++++.............+ ... ......++|+|+++.|.++.......+|.+..- ..........+
T Consensus 89 -~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~-N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~ 166 (255)
T 3qqz_A 89 -RDYAIYVISLTPNSEVKILKKIKIPLQESPT-NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKAL 166 (255)
T ss_dssp -TTTEEEEEEECTTCCEEEEEEEECCCSSCCC-SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHH
T ss_pred -CCCcEEEEEcCCCCeeeeeeeeccccccccc-cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhh
Confidence 667899999877654332222211 123 556799999999987777776656667666521 00010000000
Q ss_pred eeeeecccCCCCeEEEEEcCCCcE-EEEEc-CCeEEEEeCCCCeEEEEecccc---------CceeEEEEeCCCCEEEEE
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSV-LAVAA-ETVITLWDPDRNVLVAVIGETL---------TPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~-la~~~-d~~i~iwd~~~~~~~~~l~~~~---------~~v~~~~~s~dg~~l~s~ 667 (762)
........+.++++.|.... ++... ...+.++|.+ |+.+..+.-.. ..-..++|.++|++.++
T Consensus 167 ----~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv- 240 (255)
T 3qqz_A 167 ----QRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV- 240 (255)
T ss_dssp ----HHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-
T ss_pred ----ccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-
Confidence 01122346789999996554 44454 7899999987 44555442211 24678999999984444
Q ss_pred EcCCCCeEEEEEC
Q 040987 668 SWGSKPQLSVWNM 680 (762)
Q Consensus 668 ~~d~~~~v~vwd~ 680 (762)
++-+. ++.+.-
T Consensus 241 sE~n~--~y~f~~ 251 (255)
T 3qqz_A 241 SEPNR--FYRFTP 251 (255)
T ss_dssp ETTTE--EEEEEC
T ss_pred cCCce--EEEEEe
Confidence 66554 666643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00025 Score=66.39 Aligned_cols=227 Identities=13% Similarity=0.041 Sum_probs=131.6
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEE-EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSI-SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+.+....+..++++|++..|++ ...++.|..+|.. ++.++.+.-.. ......+++.+++.++++.-.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---------~~D~EGIa~~~~g~~~vs~E~~ 90 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---------VKDLETIEYIGDNQFVISDERD 90 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---------CSSEEEEEECSTTEEEEEETTT
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---------CCChHHeEEeCCCEEEEEECCC
Confidence 35566678999999998765554 6667889999998 88887764211 0356789999998876765567
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec-CCCceeEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG-TQNKEFTLS 546 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~-~~~~~~~~~ 546 (762)
+.+.++++.....+........... ..........++++|+++.|.++... ....|..|+-. .......+.
T Consensus 91 ~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~-------~p~~i~~~~g~~~~~~l~i~~ 162 (255)
T 3qqz_A 91 YAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEK-------NPIEVYKVNGLLSSNELHISK 162 (255)
T ss_dssp TEEEEEEECTTCCEEEEEEEECCCS-SCCCSSCCEEEEEETTTTEEEEEEES-------SSEEEEEEESTTCSSCCEEEE
T ss_pred CcEEEEEcCCCCeeeeeeeeccccc-cccccCCcceEEEeCCCCEEEEEECc-------CCceEEEEcccccCCceeeec
Confidence 8899999876654322222211110 01114557999999999887777631 11244445410 111111111
Q ss_pred E--EeecCCCCCceEEEEEcCCCC-eEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEE
Q 040987 547 T--IVYEPHRDAGISAVAFHPNRR-AAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVL 623 (762)
Q Consensus 547 ~--~~~~~h~~~~v~~~~~spd~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~l 623 (762)
. .....+ ...+.+++++|... +++.....+.+.++|.... .+..+.... ........-.....|+|.++|++.
T Consensus 163 ~~~~~~~~~-~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~--g~~~l~~~~~qpEGia~d~~G~ly 238 (255)
T 3qqz_A 163 DKALQRQFT-LDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTK--GSRGLSHNIKQAEGVAMDASGNIY 238 (255)
T ss_dssp CHHHHHTCC-SSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECST--TGGGCSSCCCSEEEEEECTTCCEE
T ss_pred chhhccccc-cCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCC--ccCCcccccCCCCeeEECCCCCEE
Confidence 0 000112 44678999999654 5555555677888887644 332221000 000000012356789999999876
Q ss_pred EEEcCCeEEEEeCC
Q 040987 624 AVAAETVITLWDPD 637 (762)
Q Consensus 624 a~~~d~~i~iwd~~ 637 (762)
+++..+.++++.-.
T Consensus 239 IvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 239 IVSEPNRFYRFTPQ 252 (255)
T ss_dssp EEETTTEEEEEEC-
T ss_pred EEcCCceEEEEEec
Confidence 66555667666543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.0015 Score=64.78 Aligned_cols=276 Identities=11% Similarity=0.007 Sum_probs=149.6
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccC--CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCce
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLP--RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSME 427 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~--~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~ 427 (762)
...+.++.|.+++..++ ++..+.|. ...+.++. .... .....+..+.+.+ +..++ ++..+.|.. ..+.|+
T Consensus 35 ~~~~~~v~~~~~~~~~~-~G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~ 109 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWL-VGVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQ 109 (327)
T ss_dssp SSCEEEEEESSSSCEEE-EETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTS
T ss_pred CCcEEEEEECCCCcEEE-EcCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCC
Confidence 34688899987776666 45567653 33344432 2111 1234678888876 44444 445564433 233344
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
.-..+.... ...+.+..+.+.++++.++.+ .++.|.. ....++.-.... ... ...+..+++.
T Consensus 110 tW~~~~~~~-------~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~---~~~------~~~~~~~~~~ 171 (327)
T 2xbg_A 110 SWSQIPLDP-------KLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALV---QEA------IGVMRNLNRS 171 (327)
T ss_dssp SCEECCCCT-------TCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEE---CSC------CCCEEEEEEC
T ss_pred CceECcccc-------CCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEee---cCC------CcceEEEEEc
Confidence 333322110 001345677777777666554 4554322 122233222221 111 3457889999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+++++++++. .....+-.|- .+..-..+. .+. ...+..+++.++++.++ ++.+|.+++.+...+
T Consensus 172 ~~~~~~~~g~---------~G~~~~S~d~-gG~tW~~~~----~~~-~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G 235 (327)
T 2xbg_A 172 PSGEYVAVSS---------RGSFYSTWEP-GQTAWEPHN----RTT-SRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNS 235 (327)
T ss_dssp TTSCEEEEET---------TSSEEEEECT-TCSSCEEEE----CCS-SSCEEEEEECTTSCEEE-EETTTEEEEEETTEE
T ss_pred CCCcEEEEEC---------CCcEEEEeCC-CCCceeECC----CCC-CCccceeEECCCCCEEE-EeCCceEEEecCCCC
Confidence 9999888774 3233333321 122211121 234 56788999999987654 456787777643323
Q ss_pred cccccccCCceeeeeec-ccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEec---cccCceeEEEEeCCCCE
Q 040987 588 LQQKDLQSSGWSCHAVG-SYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG---ETLTPIMNMSFVGSSEY 663 (762)
Q Consensus 588 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~dg~~ 663 (762)
+.-... ... ......+.++++.+++.+++++.++.| .+..+.|+--..+. .....+.++.|.+++ .
T Consensus 236 ~tW~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~ 305 (327)
T 2xbg_A 236 ENWGEL--------LSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-Q 305 (327)
T ss_dssp EEECCC--------BCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred CeeEec--------cCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-c
Confidence 321111 111 012345889999999998888888877 45555554333333 223568889998655 4
Q ss_pred EEEEEcCCCCeEEEEE
Q 040987 664 LVATSWGSKPQLSVWN 679 (762)
Q Consensus 664 l~s~~~d~~~~v~vwd 679 (762)
++.++.+|. |.-++
T Consensus 306 ~~~~G~~G~--i~~~~ 319 (327)
T 2xbg_A 306 GFILGQKGI--LLRYV 319 (327)
T ss_dssp EEEECSTTE--EEEEC
T ss_pred eEEEcCCce--EEEEc
Confidence 667777875 66554
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00078 Score=68.87 Aligned_cols=248 Identities=8% Similarity=-0.084 Sum_probs=150.0
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~ 441 (762)
+|+.+. ...|+..+++......+......+..++|++.+..|+.+. ..+.|+.+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~----- 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSC-----
T ss_pred eeEEec-cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCC-----
Confidence 444443 4688999998776655555566788999998777766665 4577888888652 1222222111
Q ss_pred CCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++.+. +++.++-...+.|.+.++........+.. . ......++++|.+.+|..+...
T Consensus 159 -----~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~--------~~~P~~iavdp~~g~ly~td~~- 222 (400)
T 3p5b_L 159 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--N--------GSKPRAIVVDPVHGFMYWTDWG- 222 (400)
T ss_dssp -----SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--S--------SCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--C--------CCCcceEEEecccCeEEEEeCC-
Confidence 45678999984 44445555678899999875433222211 1 3347899999977777666521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
..+.|...+++........ ... -...+.++++|++..|+.+. ..+.|..+|+..........
T Consensus 223 ------~~~~I~~~~~dG~~~~~~~-----~~~-l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~----- 285 (400)
T 3p5b_L 223 ------TPAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 285 (400)
T ss_dssp ------SSCCEEEEETTSCSCEEEE-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-----
T ss_pred ------CCCEEEEEeCCCCccEEEE-----ECC-CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-----
Confidence 2367888888765433222 122 34678999998877776664 45679999987543322210
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
..........+++. .+.++.+-. .+.|..+|..+|+.+..+........++...
T Consensus 286 ----~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~~~~~~p~~i~v~ 340 (400)
T 3p5b_L 286 ----DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 340 (400)
T ss_dssp ----CSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEECSCSCEEEEEEE
T ss_pred ----CCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEecCCCCCceEEEE
Confidence 11122344567762 333333434 7889999988887766665444444555443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00031 Score=72.63 Aligned_cols=247 Identities=11% Similarity=0.036 Sum_probs=136.8
Q ss_pred CeEEEEeCC-CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-C----ce
Q 040987 396 PLLYFTESP-DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-N----YC 469 (762)
Q Consensus 396 ~v~~~~~s~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d----g~ 469 (762)
....++++| ++..|+++...+.|+.+|+..+........ . .....+++++++++|+++.. + ..
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-~----------~~P~~ia~d~~G~~lyvad~~~~~~~~~ 206 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-L----------SKVRTICWTHEADSMIITNDQNNNDRPN 206 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-C----------SCEEEEEECTTSSEEEEEECCSCTTSEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-C----------CCcceEEEeCCCCEEEEEeCCCCcccce
Confidence 356788998 466677666658899999987665544432 1 45789999999996666543 1 13
Q ss_pred EEEEEcCCCCce--eeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 470 IHFYSLLDDRGI--SEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 470 i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
+..++.. +... ..+.. ......++++| +|.++++-. ..+.|..++..+..... +.
T Consensus 207 v~~~~~~-g~~~~~~~l~~-----------~~~p~giavdp~~g~lyv~d~---------~~~~V~~~~~~~~~~~~-~~ 264 (430)
T 3tc9_A 207 NYILTRE-SGFKVITELTK-----------GQNCNGAETHPINGELYFNSW---------NAGQVFRYDFTTQETTP-LF 264 (430)
T ss_dssp EEEEEGG-GTSCSEEEEEE-----------CSSCCCEEECTTTCCEEEEET---------TTTEEEEEETTTTEEEE-EE
T ss_pred EEEEeCC-Cceeeeeeecc-----------CCCceEEEEeCCCCEEEEEEC---------CCCEEEEEECCCCcEEE-EE
Confidence 4444433 2222 12211 12256788999 555554443 56789999988654321 11
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccc--ccc--cccc----CCceeeeeecccCCCCeE-EEEE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDE--LQQ--KDLQ----SSGWSCHAVGSYKKKAMT-AAAF 616 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~--~~~--~~~~----~~~~~~~~~~~~~~~~i~-~~~~ 616 (762)
. .+. ...-..++|+|+|++|+.+ ...+.|..++.... ... ..+. ...+.-.......-.... .++.
T Consensus 265 ~---~~~-~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v 340 (430)
T 3tc9_A 265 T---IQD-SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFV 340 (430)
T ss_dssp E---CSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEE
T ss_pred E---cCC-CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEE
Confidence 1 122 2356789999999955544 45678999887642 110 0000 000000000000111223 4555
Q ss_pred c--------CCCcEEEEEc-CCeEEEEeCCCCeEEEEecc----c-------------cCceeEEEEeCCCCEEEEEEcC
Q 040987 617 S--------ADGSVLAVAA-ETVITLWDPDRNVLVAVIGE----T-------------LTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 617 s--------~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~----~-------------~~~v~~~~~s~dg~~l~s~~~d 670 (762)
. ++|.+.++-. .+.|+.++. +|+....... . -..-..++++|++..|+.+...
T Consensus 341 ~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~ 419 (430)
T 3tc9_A 341 KNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE 419 (430)
T ss_dssp ECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred ccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence 3 3455544444 789999994 4654433311 0 1136789999964555555444
Q ss_pred CCCeEEEEECC
Q 040987 671 SKPQLSVWNMS 681 (762)
Q Consensus 671 ~~~~v~vwd~~ 681 (762)
+ .+|+.++++
T Consensus 420 n-~rIr~i~~e 429 (430)
T 3tc9_A 420 N-RRIRKIGYE 429 (430)
T ss_dssp G-TEEEEEEEC
T ss_pred C-CeEEEEccC
Confidence 3 248777654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.33 E-value=0.0011 Score=67.84 Aligned_cols=232 Identities=9% Similarity=-0.056 Sum_probs=143.5
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCC---ceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDR---GISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~---~~~~~~~~~~ 489 (762)
....|+..++........+... ..+..++|++.+..|... ...+.|+.+++.... ....+.. ..
T Consensus 90 ~~~~I~~i~l~~~~~~~~~~~~-----------~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~-~~ 157 (400)
T 3p5b_L 90 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RD 157 (400)
T ss_dssp ETTEEEEECTTSCSCEEEECSC-----------SCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEEC-SS
T ss_pred ccceeEEEccCCcceeEecccc-----------CcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEe-CC
Confidence 5578888888876554444332 467899999866655554 456788888886532 1111111 01
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
......+++.+.+..|..+.. ..+.|.+.+++.......+. .. ......+++.|.+..
T Consensus 158 --------~~~p~glavD~~~~~lY~~d~--------~~~~I~~~~~~g~~~~~l~~-----~~-~~~P~~iavdp~~g~ 215 (400)
T 3p5b_L 158 --------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLFR-----EN-GSKPRAIVVDPVHGF 215 (400)
T ss_dssp --------CSCEEEEEEETTTTEEEEEET--------TTTEEEEECTTTCSEEEEEE-----CS-SCCEEEEEEETTTTE
T ss_pred --------CCCcccEEEEecCCceEEEEC--------CCCeEEEEeCCCCceEEEEe-----CC-CCCcceEEEecccCe
Confidence 335788999986666665542 56789998887654332221 12 345789999997666
Q ss_pred EEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEe
Q 040987 570 AVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 570 l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l 645 (762)
|+.... .+.|...++......... ...-.....|++++++..|..+. .+.|..+|++.......+
T Consensus 216 ly~td~~~~~~I~~~~~dG~~~~~~~-----------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~ 284 (400)
T 3p5b_L 216 MYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 284 (400)
T ss_dssp EEEEECSSSCCEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE
T ss_pred EEEEeCCCCCEEEEEeCCCCccEEEE-----------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE
Confidence 665543 367888888754432222 11235678999999888888775 789999999765433333
Q ss_pred cc--ccCceeEEEEeCCCCEEEEEE-cCCCCeEEEEECCCCceeeEEEEeec
Q 040987 646 GE--TLTPIMNMSFVGSSEYLVATS-WGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 646 ~~--~~~~v~~~~~s~dg~~l~s~~-~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
.. .......+++. +..|+.+. ..+. |..+|..+|+....+.....
T Consensus 285 ~~~~~l~~P~gl~v~--~~~lywtd~~~~~--V~~~~~~~G~~~~~i~~~~~ 332 (400)
T 3p5b_L 285 EDEKRLAHPFSLAVF--EDKVFWTDIINEA--IFSANRLTGSDVNLLAENLL 332 (400)
T ss_dssp ECSSTTSSEEEEEEE--TTEEEEEESSSCS--EEEEESSSCCCCEEEECSCS
T ss_pred eCCCCCCCCEEEEEe--CCEEEEecCCCCe--EEEEEcCCCCceEEEecCCC
Confidence 22 22334567763 33444444 4444 99999888887776664443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00048 Score=71.15 Aligned_cols=247 Identities=9% Similarity=0.030 Sum_probs=136.2
Q ss_pred CeEEEEeCCC--CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ce
Q 040987 396 PLLYFTESPD--PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YC 469 (762)
Q Consensus 396 ~v~~~~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~ 469 (762)
....++++|+ +..|+++...+.|+.++..++........ . .....++++++|+++++.... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-~----------~~P~giavd~dG~lyVad~~~~~~~~g 208 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-I----------GQCADVNFTLNGDMVVVDDQSSDTNTG 208 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-C----------SCEEEEEECTTCCEEEEECCSCTTSEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-C----------CCccEEEECCCCCEEEEcCCCCcccce
Confidence 3567899984 45566665558999999987776554432 1 457899999999944443311 12
Q ss_pred EEEEEcCCCCce-eeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 470 IHFYSLLDDRGI-SEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 470 i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+..++...+... ..+.. ......++++| +|.+.++-. .++.|+.++..++.....+..
T Consensus 209 v~~~~~~~~~~~~~~~~~-----------~~~P~giavd~~~G~lyv~d~---------~~~~V~~~d~~~g~~~~~~~~ 268 (433)
T 4hw6_A 209 IYLFTRASGFTERLSLCN-----------ARGAKTCAVHPQNGKIYYTRY---------HHAMISSYDPATGTLTEEEVM 268 (433)
T ss_dssp EEEECGGGTTCCEEEEEE-----------CSSBCCCEECTTTCCEEECBT---------TCSEEEEECTTTCCEEEEEEE
T ss_pred EEEEECCCCeeccccccc-----------cCCCCEEEEeCCCCeEEEEEC---------CCCEEEEEECCCCeEEEEEec
Confidence 333443222111 11110 12346788999 555444443 567899998886654222221
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccc--ccccc--cc----cCCceeeeeecccCCCCeEEEEE--
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICND--ELQQK--DL----QSSGWSCHAVGSYKKKAMTAAAF-- 616 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~--~~~~~--~~----~~~~~~~~~~~~~~~~~i~~~~~-- 616 (762)
.+. ...-..++|+|++++|+.+ ...+.|+.+++.. +.... .+ ....+.-.......-.....+++
T Consensus 269 ---~~~-~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~ 344 (433)
T 4hw6_A 269 ---MDT-KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK 344 (433)
T ss_dssp ---CSC-CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred ---cCC-CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence 122 2233479999999955554 4567898888753 22110 00 00000000000011234677999
Q ss_pred -------cCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc------------------cCceeEEEEe-CCCCEEEEEEc
Q 040987 617 -------SADGSVLAVAA-ETVITLWDPDRNVLVAVIGET------------------LTPIMNMSFV-GSSEYLVATSW 669 (762)
Q Consensus 617 -------s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~------------------~~~v~~~~~s-~dg~~l~s~~~ 669 (762)
.++|.+.++-. .+.|+.++. +|...... +. -..-..++++ ++|. |+.+..
T Consensus 345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~-lyVaD~ 421 (433)
T 4hw6_A 345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC-FYIGDC 421 (433)
T ss_dssp CGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE-EEEEEG
T ss_pred cccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCE-EEEEeC
Confidence 66776665555 789999986 56544332 21 1225679999 4554 444443
Q ss_pred CCCCeEEEEECC
Q 040987 670 GSKPQLSVWNMS 681 (762)
Q Consensus 670 d~~~~v~vwd~~ 681 (762)
.+ .+|+..+++
T Consensus 422 ~n-~rIr~i~~e 432 (433)
T 4hw6_A 422 DN-HRVRKIAPE 432 (433)
T ss_dssp GG-TEEEEEEEC
T ss_pred CC-CEEEEEecC
Confidence 33 237777654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00082 Score=66.15 Aligned_cols=233 Identities=11% Similarity=0.020 Sum_probs=141.9
Q ss_pred cCCcEEEEEcCCce--EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeeccc
Q 040987 414 ADNQVHLLKMPSME--IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 414 ~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
....|+.+++.... ....+.+. .....++|++.+..|. +-...+.|..+++........+... .
T Consensus 11 ~~~~I~~i~l~~~~~~~~~~~~~~-----------~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~-~- 77 (318)
T 3sov_A 11 NRRDLRLVDATNGKENATIVVGGL-----------EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVS-G- 77 (318)
T ss_dssp CEEEEEEEETTCTTSCCEEEEEEE-----------EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEE-C-
T ss_pred ccCeEEEEECCCCceEEEEEecCC-----------CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcC-C-
Confidence 45678888887652 22222221 3456889998655444 4456688999998765322222111 0
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
......+++.+.+..|..+.. ..+.|.+++++.......+ ... ......+++.|.+..|
T Consensus 78 -------l~~p~glavd~~~g~ly~~d~--------~~~~I~~~~~dG~~~~~l~-----~~~-~~~P~giavdp~~g~l 136 (318)
T 3sov_A 78 -------LLSPDGLACDWLGEKLYWTDS--------ETNRIEVSNLDGSLRKVLF-----WQE-LDQPRAIALDPSSGFM 136 (318)
T ss_dssp -------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSCSCEEEE-----CSS-CSSEEEEEEEGGGTEE
T ss_pred -------CCCccEEEEEcCCCeEEEEEC--------CCCEEEEEECCCCcEEEEE-----eCC-CCCccEEEEeCCCCEE
Confidence 123567899986666655542 5678999998765432221 122 4467899999976666
Q ss_pred EEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEec
Q 040987 571 VSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 571 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~ 646 (762)
+.+.. .+.|...++......... ...-.....++++|++..|..+. .+.|..+|++.......+.
T Consensus 137 y~td~~~~~~I~r~~~dG~~~~~~~-----------~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~ 205 (318)
T 3sov_A 137 YWTDWGEVPKIERAGMDGSSRFIII-----------NSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK 205 (318)
T ss_dssp EEEECSSSCEEEEEETTSCSCEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred EEEecCCCCEEEEEEcCCCCeEEEE-----------ECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec
Confidence 65553 467888887643322211 11234568999999888877775 7899999997543333333
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
+.......+++.. ..|+.+...+ +.|..++..+|+....+.....
T Consensus 206 ~~~~~P~glav~~--~~lywtd~~~-~~V~~~~~~~G~~~~~i~~~~~ 250 (318)
T 3sov_A 206 GSLPHPFALTLFE--DILYWTDWST-HSILACNKYTGEGLREIHSDIF 250 (318)
T ss_dssp SCCSCEEEEEEET--TEEEEEETTT-TEEEEEETTTCCSCEEEECCCS
T ss_pred CCCCCceEEEEeC--CEEEEEecCC-CeEEEEECCCCCceEEEeCCCC
Confidence 2334456777754 3444444332 3599999988988776665543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.25 E-value=0.017 Score=67.09 Aligned_cols=523 Identities=11% Similarity=0.056 Sum_probs=261.3
Q ss_pred eeEEEEecCCCeEEEEecCCc--------ceeeeecCcccccCCceeecC----CCEEEEEe----CCEEEEEEcccc-e
Q 040987 43 SFIFAVARSSGLCRTAEYPAV--------NSKMIRGGRSYVSSPPAFSND----VKRLLVCT----SNTVSIFSTSTG-L 105 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~--------~~~~~~~h~~~v~~~~~~s~d----g~~la~~~----~~~i~iwd~~~~-~ 105 (762)
..++.+|+..|.=.+|.+... +.+.....-++|.. ++.-.. ...|++++ +|.+++..-.-+ +
T Consensus 337 ~g~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~~N~~PI~D-~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~ 415 (1158)
T 3ei3_A 337 NGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVD-MCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIH 415 (1158)
T ss_dssp TTEEEEECSSSCEEEEEECSSCCTTSCCEEEEEEECCCCSEEE-EEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEE
T ss_pred CCEEEEEEecCCcEEEEEecCCCCccceEEeEeeecCcCCcee-EEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEE
Confidence 336777787777777777642 12223444566765 555321 12444444 288888764222 1
Q ss_pred EEe--eecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 106 QIS--SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 106 ~~~--~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
.+. .+. ....++.+....++. .-.||+.+..+.| .|+.+. ++.+..++... .+.
T Consensus 416 ~~~~~~l~-gv~~iWtl~~~~~~~----~~~yLvlS~~~~T-~Vl~i~-~e~veev~~~g----------------f~~- 471 (1158)
T 3ei3_A 416 EHASIDLP-GIKGLWPLRSDPNRE----TDDTLVLSFVGQT-RVLMLN-GEEVEETELMG----------------FVD- 471 (1158)
T ss_dssp EEEEECCC-SCCEEEEECCCSSCS----SCCEEEEEETTEE-EEEEEE-TTEEEEECCTT----------------CCS-
T ss_pred EEEeecCC-CccEEEEEeecCCCC----CCCEEEEECCCCe-EEEEEe-CCccccccccc----------------ccC-
Confidence 222 233 234566665432210 0057777776666 555543 22232222110 000
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEc
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~ 263 (762)
....|+....++...++- ....|++.+...+..+..........|...+.+. .+++.+.++.+.++++
T Consensus 472 ~~~TL~~~~l~~~~ivQV----------t~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~g~~l~~fel 539 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQQLIQI----------TSASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAVGRALYYLQI 539 (1158)
T ss_dssp SSCEEEEEEETTTEEEEE----------ESSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEETTEEEEEEE
T ss_pred CCCcEEEEEcCCCeEEEE----------ecCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEECCEEEEEEe
Confidence 111133333322211111 3345666665544333223223334566666553 4565446788888888
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCC------CcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCC
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPT------QRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (762)
..++.. ...+ ..-...|.|+++.|. ++++|+|.. |++|+|+++.+.+.+..
T Consensus 540 ~~~~L~--~~~~--~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~------------------ 597 (1158)
T 3ei3_A 540 HPQELR--QISH--TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHK------------------ 597 (1158)
T ss_dssp ETTEEE--EEEE--EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEE------------------
T ss_pred eCCcee--eecc--cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEE------------------
Confidence 765432 1111 223567999999863 369999986 99999999975443320
Q ss_pred cccCCccccceeeeccccceeEEEEe--cCCCEEEEEecCCeEEEEec--CCCcee----ccCCCCCCeEEEEeCCCCCe
Q 040987 337 VRDNDDADLCTTWHWHPSEVSVLIFS--SDGAYLYSGGKEGVLVVWQL--DTGKKK----FLPRIGSPLLYFTESPDPSL 408 (762)
Q Consensus 337 ~~~~~~~~~~~~~~~h~~~v~~~~~s--~~g~~l~s~~~dg~i~~wd~--~~~~~~----~~~~~~~~v~~~~~s~~~~~ 408 (762)
..+.. .....++.+. ....+|..|-.||.+..+.+ .+++.. ...+ ..++.-..+...|..
T Consensus 598 ----------~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~ 665 (1158)
T 3ei3_A 598 ----------EMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTT 665 (1158)
T ss_dssp ----------EECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEEEEEESSSCE
T ss_pred ----------EECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEEEEEeeCCce
Confidence 11110 0112223222 23356778888888765544 344442 1111 234443334334444
Q ss_pred EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce-eeEEEeCC--CCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 409 SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC-RDIAFNHD--GGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
-+.+..+....+|..+..-....+.. ..+ ....|+.. ..-++..+ ++.+++..+..........
T Consensus 666 ~V~a~s~rp~liy~~~~~l~~s~l~~------------~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ 732 (1158)
T 3ei3_A 666 NVFACSDRPTVIYSSNHKLVFSNVNL------------KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRT 732 (1158)
T ss_dssp EEEEESSSCEEEEESSSSEEEEEBSS------------SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEE
T ss_pred eEEEECCCCEEEEEcCCceEEeccCh------------HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEE
Confidence 33344455555555432211111211 112 22334332 12344443 4458888876543322222
Q ss_pred eecccccCCCCcceeEEEEEEecCCCeEEEEeeecc---ccC------------------------------------C-
Q 040987 486 VCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA---EEG------------------------------------I- 525 (762)
Q Consensus 486 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~---~~~------------------------------------~- 525 (762)
... ...+..++++|+.+.++.+..+.. .++ .
T Consensus 733 ipL---------~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 803 (1158)
T 3ei3_A 733 VPL---------YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEE 803 (1158)
T ss_dssp EEC---------SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCE
T ss_pred EeC---------CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCc
Confidence 222 456899999998887766553321 000 0
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEE---EcCC-CCeEEEEe----------CCCcEEEEEcccccccc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVA---FHPN-RRAAVSSS----------YGGDFKVWICNDELQQK 591 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~---~spd-~~~l~~~~----------~dg~i~iwd~~~~~~~~ 591 (762)
.....|++.|..+.+....+. +.. ...+.+++ |..+ ..+++.|+ ..|.|.+|++..++...
T Consensus 804 ~~~s~i~lidp~t~~~i~~~~---l~~--nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l 878 (1158)
T 3ei3_A 804 VEVHNLLIIDQHTFEVLHAHQ---FLQ--NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT 878 (1158)
T ss_dssp EEEEEEEEEETTTCCEEEEEE---CCT--TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE
T ss_pred eeeEEEEEEeCCCCeEEEEEe---CCC--CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE
Confidence 023568888887776543332 222 23444444 4333 46788776 24789999997433222
Q ss_pred cccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEE-EeccccCceeEEEEeCCCCEEEEEEcC
Q 040987 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVA-VIGETLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.. .....+.+++++-- +| +|++|-...|++|++...+.+. ... +-..|..+.....+.+++.|..-
T Consensus 879 v~----------~~~v~g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~~~~-~~~~i~~~~l~~~~~~I~vgD~~ 945 (1158)
T 3ei3_A 879 VA----------EKEVKGAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRTECN-HYNNIMALYLKTKGDFILVGDLM 945 (1158)
T ss_dssp EE----------EEEESSCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEEEEE-ECCCSCEEEEEEETTEEEEEESS
T ss_pred EE----------EEEcCCcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEEEee-ccccEEEEEEeccCCEEEEEEhh
Confidence 11 01235678877643 45 5555667899999998765433 221 11223333333346677777655
Q ss_pred CCCeEEEE
Q 040987 671 SKPQLSVW 678 (762)
Q Consensus 671 ~~~~v~vw 678 (762)
.. |.+.
T Consensus 946 ~S--v~~~ 951 (1158)
T 3ei3_A 946 RS--VLLL 951 (1158)
T ss_dssp BC--EEEE
T ss_pred he--EEEE
Confidence 54 5443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00084 Score=69.31 Aligned_cols=262 Identities=9% Similarity=0.002 Sum_probs=144.9
Q ss_pred ceeEEEEec-CCCEEEEEec-CCeEEEEecCCCceeccCCCC----CCeEEEEe-------CCCCCeEEEEecCC-----
Q 040987 355 EVSVLIFSS-DGAYLYSGGK-EGVLVVWQLDTGKKKFLPRIG----SPLLYFTE-------SPDPSLSSISCADN----- 416 (762)
Q Consensus 355 ~v~~~~~s~-~g~~l~s~~~-dg~i~~wd~~~~~~~~~~~~~----~~v~~~~~-------s~~~~~l~~~~~d~----- 416 (762)
....|+|+| +...|+.+.. .+.|++.|++++....+.... .....++| +++|+.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3555555544 467999999988775543322 25789999 99999777776554
Q ss_pred --cEEEEEcCC-ceEE-----EEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeecCceEEEEEcC-------CCCc
Q 040987 417 --QVHLLKMPS-MEII-----RSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAENYCIHFYSLL-------DDRG 480 (762)
Q Consensus 417 --~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~i~d~~-------~~~~ 480 (762)
.+.+++... +... ..+... .....++++|+ +.++++-..++.|..+|+. ++..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-----------~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~ 288 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAY-----------KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGS 288 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEE-----------SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCC
T ss_pred CceEEEEecCCCCceeecccceeeccC-----------CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCcee
Confidence 255665333 1211 112111 23467899995 4555556677889999997 4543
Q ss_pred -----------eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce----eEE
Q 040987 481 -----------ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----FTL 545 (762)
Q Consensus 481 -----------~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----~~~ 545 (762)
...+..... ......++|+|+|++|..+.. ..+.|+.++....... ..+
T Consensus 289 ~tp~~~~~~g~~~~l~~~~~--------~~~p~~ia~~p~G~~lYvaD~--------~~h~I~kid~dg~~~~~~~~~~~ 352 (496)
T 3kya_A 289 WDPIVKNNPNTFKQLFTIAD--------PSWEFQIFIHPTGKYAYFGVI--------NNHYFMRSDYDEIKKEFITPYNF 352 (496)
T ss_dssp CCCBGGGCTTTEEEEEECSS--------SSCCEEEEECTTSSEEEEEET--------TTTEEEEEEEETTTTEECCCEEE
T ss_pred ecccccccccccceeEecCC--------CCCceEEEEcCCCCEEEEEeC--------CCCEEEEEecCCCcceecccEEe
Confidence 112211111 234578999999997666653 6678888776543211 111
Q ss_pred EEE-eecCCC--------CCceE-EEEEc-------CCCCeEEEEeCCCcEEEEEcccccccccccC-C--------cee
Q 040987 546 STI-VYEPHR--------DAGIS-AVAFH-------PNRRAAVSSSYGGDFKVWICNDELQQKDLQS-S--------GWS 599 (762)
Q Consensus 546 ~~~-~~~~h~--------~~~v~-~~~~s-------pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~--------~~~ 599 (762)
... -..+.. -..-. .++.. +++.++++-...+.|+.++. ++......-. . .|.
T Consensus 353 aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v~TiaG~g~~~~~~~~~~~G 431 (496)
T 3kya_A 353 VGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIVSTYAGRGASTSLADGNQWG 431 (496)
T ss_dssp EEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBEEEEEESCTTHHHHHSCSCC
T ss_pred cCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCEEEEecccccccccCccccc
Confidence 110 001110 11233 44554 45666666666778888884 3422211100 0 000
Q ss_pred ee---eecccCCCCeEEEEEcCC-CcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 600 CH---AVGSYKKKAMTAAAFSAD-GSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 600 ~~---~~~~~~~~~i~~~~~s~d-g~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
.. ......-.....++++++ |.++++=. +.+|+.++++.......
T Consensus 432 ~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~~ 481 (496)
T 3kya_A 432 TDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVAG 481 (496)
T ss_dssp CCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC----
T ss_pred cCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccccc
Confidence 00 000111245678999997 55444434 78999999887655443
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0017 Score=72.01 Aligned_cols=234 Identities=9% Similarity=-0.048 Sum_probs=141.5
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE-EeecCceEEEEEcCCCCceeeEEeeccccc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENYCIHFYSLLDDRGISEVQVCERNHQ 492 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 492 (762)
....|+..++........+... ..+..++|++....|+ +-...+.|+.+++................
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~-----------~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~- 469 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD- 469 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSC-----------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-
T ss_pred cccceeEeeccCCcceeeecCC-----------CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC-
Confidence 4567888888765544444332 4667899998555554 44456788888886532100101110100
Q ss_pred CCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE
Q 040987 493 PGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS 572 (762)
Q Consensus 493 ~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~ 572 (762)
......|++.+.++.|..+.. ..+.|.+.++........+ ... ......|++.|.+.+|+.
T Consensus 470 -----l~~P~GLAvD~~~~~LY~tD~--------~~~~I~v~~ldG~~~~~l~-----~~~-l~~P~gIaVDp~~g~LYw 530 (791)
T 3m0c_C 470 -----IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLF-----REN-GSKPRAIVVDPVHGFMYW 530 (791)
T ss_dssp -----CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEEEEE-----ECT-TCCEEEEEEETTTTEEEE
T ss_pred -----CCCcceeeeeecCCcEEEEec--------CCCeEEEEeCCCCeEEEEE-----eCC-CCCcceEEEecCCCCEEE
Confidence 234668999998877776653 6679999998865432222 122 446789999998666665
Q ss_pred EeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEeccc
Q 040987 573 SSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIGET 648 (762)
Q Consensus 573 ~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~~~ 648 (762)
... . +.|.+.++......... ...-.....|++.+.+..|..+. ...|...+++.......+...
T Consensus 531 tD~g~~~~I~~~~~dG~~~~~lv-----------~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~ 599 (791)
T 3m0c_C 531 TDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE 599 (791)
T ss_dssp EECSSSCEEEEEETTSCCEEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred ecCCCCCeEEEEecCCCceEEEE-----------eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC
Confidence 543 2 67888888654433222 12235678999998888877775 689999999765444444321
Q ss_pred --cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 649 --LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 649 --~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
......|++. +.+|+.+.... +.|...|..+|+.+..+...
T Consensus 600 ~~l~~P~glav~--~~~lYwtD~~~-~~I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 600 KRLAHPFSLAVF--EDKVFWTDIIN-EAIFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp TTTSSEEEEEEE--TTEEEEEETTT-TEEEEEETTTCCCCEEEECS
T ss_pred CccCCCCEEEEe--CCEEEEEECCC-CEEEEEeCCCCcceEEeecC
Confidence 2234456664 44666665544 35888888888776665433
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.13 E-value=0.002 Score=63.28 Aligned_cols=234 Identities=12% Similarity=-0.038 Sum_probs=140.1
Q ss_pred EEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEE-EeecCCeEEEEeccCCceeecccccccccc
Q 040987 249 YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVA-AGDVTGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 249 ~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~-~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
+|..+....|+..++...... . .........+..++|++.+..|. +-...+.|..++..+....
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~---~-~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~----------- 70 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKEN---A-TIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV----------- 70 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSC---C-EEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC-----------
T ss_pred EEEEEccCeEEEEECCCCceE---E-EEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce-----------
Confidence 566666788999999876421 0 12222234577899998655555 4445678888887654210
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE-ecCCeEEEEecCCCceecc-CCCCCCeEEEEeCCC
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG-GKEGVLVVWQLDTGKKKFL-PRIGSPLLYFTESPD 405 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~dg~i~~wd~~~~~~~~~-~~~~~~v~~~~~s~~ 405 (762)
...+.........+++.+.+..|+.+ ...+.|.+++++......+ .........+++.|.
T Consensus 71 ------------------~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~ 132 (318)
T 3sov_A 71 ------------------QNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPS 132 (318)
T ss_dssp ------------------CEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGG
T ss_pred ------------------EEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCC
Confidence 01112222346678898755555544 4567899999886544333 234456788999987
Q ss_pred CCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCcee
Q 040987 406 PSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 406 ~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 482 (762)
+..|+.+.. .+.|..+++........+...- .....+++++++..|..+ +..+.|..+|+.... ..
T Consensus 133 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l----------~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~-~~ 201 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI----------YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQ 201 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETTSCSCEEEECSSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred CCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC----------CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCc-eE
Confidence 777776653 4678888876432222222111 356899999977666655 456889999986432 22
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
.+.... ......+++..+ .+..... ..+.|..++..+++....+
T Consensus 202 ~~~~~~---------~~~P~glav~~~--~lywtd~--------~~~~V~~~~~~~G~~~~~i 245 (318)
T 3sov_A 202 AVVKGS---------LPHPFALTLFED--ILYWTDW--------STHSILACNKYTGEGLREI 245 (318)
T ss_dssp EEECSC---------CSCEEEEEEETT--EEEEEET--------TTTEEEEEETTTCCSCEEE
T ss_pred EEecCC---------CCCceEEEEeCC--EEEEEec--------CCCeEEEEECCCCCceEEE
Confidence 222100 233566777533 3333332 6678888998777665444
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=0.0025 Score=65.78 Aligned_cols=258 Identities=7% Similarity=-0.033 Sum_probs=142.2
Q ss_pred CeEEEEeCC-CCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE-------eCCCCEEEEeec
Q 040987 396 PLLYFTESP-DPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF-------NHDGGLVALRAE 466 (762)
Q Consensus 396 ~v~~~~~s~-~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------s~~~~~l~~~~~ 466 (762)
....++++| +...|+++.. .+.|++.|+.++............. .....++| ++++++|+++..
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~-------~~p~~ia~~~~~~~~d~~G~~lyvad~ 212 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPT-------NRIRSIAFNKKIEGYADEAEYMIVAID 212 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSC-------SBEEEEEECCCBTTTBCTTCEEEEEEC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCcccc-------CCCcEEEEeecccccCCCCCEEEEEeC
Confidence 467899998 3555555444 4679999999877766554322111 45789999 999997766654
Q ss_pred Cc-------eEEEEEcCC-CCce-----eeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 467 NY-------CIHFYSLLD-DRGI-----SEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 467 dg-------~i~i~d~~~-~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
.+ .+.+++... +... ..+.. ......++++|++..|..+.. ..+.|..
T Consensus 213 ~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-----------~~~p~giavdp~~g~LYvtd~--------~~g~V~r 273 (496)
T 3kya_A 213 YDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-----------YKQCNGATIHPINGELYFNSY--------EKGQVFR 273 (496)
T ss_dssp CCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-----------ESCCCCEEECTTTCCEEEEET--------TTTEEEE
T ss_pred CCCCcccCceEEEEecCCCCceeecccceeecc-----------CCCceEEEEcCCCCeEEEEEC--------CCCEEEE
Confidence 43 366666443 1211 12211 112457788997666666553 6778999
Q ss_pred EEec-------CCCc-----------eeEEEEEeecCCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEccccc--cc--
Q 040987 534 WVSG-------TQNK-----------EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDEL--QQ-- 590 (762)
Q Consensus 534 wd~~-------~~~~-----------~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~--~~-- 590 (762)
+|+. ++.. ...+. ..+. ...-..++|+|+|++|+.+ +..+.|+.++..... ..
T Consensus 274 ~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~---~~~~-~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~ 349 (496)
T 3kya_A 274 LDLVDYFKTIKNGGSWDPIVKNNPNTFKQLF---TIAD-PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITP 349 (496)
T ss_dssp ECHHHHHHHHHTTCCCCCBGGGCTTTEEEEE---ECSS-SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCC
T ss_pred EecccccccccCceeecccccccccccceeE---ecCC-CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceeccc
Confidence 9998 4543 11221 1222 3456789999999965544 456778887654321 10
Q ss_pred cccc----CCceeeeeecccCCCCeE-EEEEc-------CCCcEEEEEc-CCeEEEEeCCCCeEEEEeccc---------
Q 040987 591 KDLQ----SSGWSCHAVGSYKKKAMT-AAAFS-------ADGSVLAVAA-ETVITLWDPDRNVLVAVIGET--------- 648 (762)
Q Consensus 591 ~~~~----~~~~~~~~~~~~~~~~i~-~~~~s-------~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~--------- 648 (762)
..+. ...+.--......-.... .++.. ++|.+.++=. +.+|+.++ .+|.. .++.+.
T Consensus 350 ~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~ 427 (496)
T 3kya_A 350 YNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADG 427 (496)
T ss_dssp EEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHS
T ss_pred EEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCc
Confidence 0000 000000000000112234 34444 4555544444 89999999 45643 333221
Q ss_pred ---------------cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCcee
Q 040987 649 ---------------LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 649 ---------------~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~ 686 (762)
-..-..|++++++..|+.+...+ .+|+.++++.....
T Consensus 428 ~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N-~rIrki~~~~~~~~ 479 (496)
T 3kya_A 428 NQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVG-HTIRTISMEQEENV 479 (496)
T ss_dssp CSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTT-TEEEEEEECCCC--
T ss_pred cccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCC-CEEEEEECCCCccc
Confidence 11256789998734555555444 25888887764433
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.001 Score=64.65 Aligned_cols=203 Identities=11% Similarity=0.186 Sum_probs=124.3
Q ss_pred CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec----CCCe--EEEEeeeccccCCCc--e
Q 040987 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ----DGSL--MSTVDIKLAEEGIGS--L 528 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----~g~~--l~~~~~~~~~~~~~~--d 528 (762)
...+++.....+-+.+||+ +++.+..+.. ..+..+..-| .|+. ++.++.+ . +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R-------~~~~ 98 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNR-------SEGK 98 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEEC-------STTC
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCC-------CCCC
Confidence 3445555566778999999 7777766532 2345555544 3333 4454432 4 6
Q ss_pred eEEEEEEecCCC-ceeEEEEE--eecCCCCCceEEEEE--cCC-CC-eEEEEeCCCcEEEEEccc-------cccccccc
Q 040987 529 VCLKFWVSGTQN-KEFTLSTI--VYEPHRDAGISAVAF--HPN-RR-AAVSSSYGGDFKVWICND-------ELQQKDLQ 594 (762)
Q Consensus 529 ~~i~iwd~~~~~-~~~~~~~~--~~~~h~~~~v~~~~~--spd-~~-~l~~~~~dg~i~iwd~~~-------~~~~~~~~ 594 (762)
++|.+|++.... ....+... .. +.....+..+++ +|. ++ ++++...+|.+..|++.. .+.+..+.
T Consensus 99 n~l~vf~iDp~~~~l~~i~~~~~pv-~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 99 NTIEIYAIDGKNGTLQSMTDPDHPI-ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CEEEEEEECTTTCCEEECSCTTSCE-ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CeEEEEEECCCCCceeeccccccCc-CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 899999885322 22222100 00 010145566777 774 44 577778889999999843 22222221
Q ss_pred CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCC-----CCeEEEEec-ccc-CceeEEEE--eCCCC-E
Q 040987 595 SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPD-----RNVLVAVIG-ETL-TPIMNMSF--VGSSE-Y 663 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~-----~~~~~~~l~-~~~-~~v~~~~~--s~dg~-~ 663 (762)
....+..|+..+....|.++. +..|..++.+ +++.+..+. ++- ..+..|++ .++++ +
T Consensus 178 ------------lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gy 245 (355)
T 3amr_A 178 ------------MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGY 245 (355)
T ss_dssp ------------CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEE
T ss_pred ------------CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEE
Confidence 235778899999888999997 7667777755 356665552 222 35888888 45666 6
Q ss_pred EEEEEcCCCCeEEEEECC-CCceeeEEEEee
Q 040987 664 LVATSWGSKPQLSVWNMS-KLSISWSYLLHV 693 (762)
Q Consensus 664 l~s~~~d~~~~v~vwd~~-~~~~~~~~~~~~ 693 (762)
|++++... +.+.+||.. +.+.+..|....
T Consensus 246 LivSsQG~-~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 246 LMASSQGN-SSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEEEEGGG-TEEEEEESSTTCCEEEEEEECC
T ss_pred EEEEcCCC-CEEEEEECCCCCcEEEEEEecC
Confidence 66666333 249999997 778887776544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00066 Score=65.92 Aligned_cols=205 Identities=12% Similarity=0.098 Sum_probs=118.5
Q ss_pred CCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC----CCE--EEEee--c--CceEEEEE
Q 040987 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGL--VALRA--E--NYCIHFYS 474 (762)
Q Consensus 405 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~--l~~~~--~--dg~i~i~d 474 (762)
...+++.....+.+.+||+ +|+.++.+.. +.+..+.+-|+ |+. ++.++ . +++|.+|+
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~------------g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~ 105 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC------------SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC------------CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEE
Confidence 3455665667789999999 7888888764 34555555552 332 33333 3 57899997
Q ss_pred cCC-CCceeeEEeecccccCCCCcceeEEEEEE--ecC-CC-eEEEEeeeccccCCCceeEEEEEEecC---CCceeEEE
Q 040987 475 LLD-DRGISEVQVCERNHQPGDDVTVVVTLVAL--SQD-GS-LMSTVDIKLAEEGIGSLVCLKFWVSGT---QNKEFTLS 546 (762)
Q Consensus 475 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~---~~~~~~~~ 546 (762)
+.. ...+..+.... .+.......+..+++ +|. ++ ++++.. .++.+..|++.. +....++.
T Consensus 106 iDp~~~~l~~i~~~~---~pv~t~~~~pyGlcly~~~~~g~~yafV~~---------k~G~~~q~~l~~~~~g~~~~~lV 173 (355)
T 3amr_A 106 IDGKNGTLQSMTDPD---HPIATAINEVYGFTLYHSQKTGKYYAMVTG---------KEGEFEQYELKADKNGYISGKKV 173 (355)
T ss_dssp ECTTTCCEEECSCTT---SCEECCCSSCCCEEEEECTTTCCEEEEEEC---------SSSEEEEEEEEECTTSCEEEEEE
T ss_pred ECCCCCceeeccccc---cCcCCCCCCeeEEEEEecCCCCcEEEEEEC---------CCCeEEEEEEEeCCCCcccceEE
Confidence 732 22233321100 000000134566777 774 54 455554 678999998843 22222221
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccc-----ccccccCCceeeeeecccCCCCeEEEEE--cCC
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL-----QQKDLQSSGWSCHAVGSYKKKAMTAAAF--SAD 619 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~d 619 (762)
... .- ...+..++..+....|+.+-++.-|..++..... .+... ....-...+..|++ .++
T Consensus 174 R~f--~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~---------~~g~l~aDvEGLai~~~~~ 241 (355)
T 3amr_A 174 RAF--KM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA---------DGRHLTRDIEGLTIYYAAD 241 (355)
T ss_dssp EEE--EC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB---------SSSSBCSCEEEEEEEECGG
T ss_pred EEe--cC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe---------cCCccccCcceEEEEecCC
Confidence 111 11 4578889999988899999988666666644221 11111 01122346788888 566
Q ss_pred Cc-EEEEEc--CCeEEEEeCC-CCeEEEEec
Q 040987 620 GS-VLAVAA--ETVITLWDPD-RNVLVAVIG 646 (762)
Q Consensus 620 g~-~la~~~--d~~i~iwd~~-~~~~~~~l~ 646 (762)
|+ +|++++ +.+..+||.+ +.+.+..+.
T Consensus 242 g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 242 GKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp GCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 66 666665 8899999997 667777664
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0026 Score=70.58 Aligned_cols=235 Identities=7% Similarity=-0.124 Sum_probs=141.9
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCc----eEEEEEccCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSM----EIIRSISGIKLPCPL 441 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~----~~~~~~~~~~~~~~~ 441 (762)
+|+.+ ....|+..++.......+......+..+++.+....|+.+. ..+.|+.+++... .....+....
T Consensus 397 ~Ll~a-n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l----- 470 (791)
T 3m0c_C 397 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI----- 470 (791)
T ss_dssp EEEEE-CBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSC-----
T ss_pred ccccc-cccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-----
Confidence 34443 33568888887766655555556788999998666666554 4567888888752 2222232111
Q ss_pred CCcccCceeeEEEeCCCCEEEE-eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeec
Q 040987 442 PEEYKGLCRDIAFNHDGGLVAL-RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~ 520 (762)
.....+++.+.++.|+. -...+.|.+.++.... ...+... . ......|++.|.+.+|..+...
T Consensus 471 -----~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~-~--------l~~P~gIaVDp~~g~LYwtD~g- 534 (791)
T 3m0c_C 471 -----QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-N--------GSKPRAIVVDPVHGFMYWTDWG- 534 (791)
T ss_dssp -----SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-T--------TCCEEEEEEETTTTEEEEEECS-
T ss_pred -----CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeC-C--------CCCcceEEEecCCCCEEEecCC-
Confidence 45678999987755554 4566899999987543 2222211 1 2347899999987777766521
Q ss_pred cccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 521 ~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
....|...++........+ ... ......|++++.+..|+.+. ..+.|...++..........
T Consensus 535 ------~~~~I~~~~~dG~~~~~lv-----~~~-l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~----- 597 (791)
T 3m0c_C 535 ------TPAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE----- 597 (791)
T ss_dssp ------SSCEEEEEETTSCCEEEEE-----CSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-----
T ss_pred ------CCCeEEEEecCCCceEEEE-----eCC-CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-----
Confidence 2368888888755433222 222 34678999998776666654 45678888886544332221
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEec
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l~ 646 (762)
....-....+|++ ++..|..+. .+.|...|..+|+.+..+.
T Consensus 598 ----~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 598 ----DEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp ----CTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred ----CCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence 1111223446666 334565554 7889989887776655553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.015 Score=57.68 Aligned_cols=279 Identities=8% Similarity=0.059 Sum_probs=168.7
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..+|.+.|+..+........ ..-+.-.+|..+.++.-. ...+.|+|+++...++.+.-.. .|.--.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi--~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-----------~VvfWk 112 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DVTFWK 112 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC--CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-----------CCCEEE
T ss_pred CCeEEEEECCCCCcceeccc--ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-----------CceEEE
Confidence 34799999988665322222 223455688888887764 7899999999988888766433 333344
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
|-.+ +.|+..+. ..|+-|++........ +.....-. ...|.....+++.++++..+...... .-.|.+.
T Consensus 113 Wis~-~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~------~~QIInY~~d~~~kW~~l~GI~~~~~--~v~G~mQ 182 (494)
T 1bpo_A 113 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLA------GCQIINYRTDAKQKWLLLTGISAQQN--RVVGAMQ 182 (494)
T ss_dssp EEET-TEEEEECS-SEEEEEESSSSCCCEEEEECCGGGT------TCEEEEEEECTTSSEEEEEEEEEETT--EEEEEEE
T ss_pred ecCC-CeEEEEcC-CeeEEecccCCCCchhheecchhcc------cceEEEEEECCCCCeEEEEeecccCC--cccceEE
Confidence 4433 34555544 4699999976433332 22221111 56788999999999998776432222 1468999
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEcCC---CCeEEEEeCC---CcEEEEEcccc-cccccccCCceeeeeecc
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN---RRAAVSSSYG---GDFKVWICNDE-LQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd---~~~l~~~~~d---g~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 605 (762)
+|..+..... ..+|| ......+.+..+ ..+++.+... +.+.|.++... .....+............
T Consensus 183 LYS~er~~sQ------~ieGh-aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe 255 (494)
T 1bpo_A 183 LYSVDRKVSQ------PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (494)
T ss_dssp EEESTTCCEE------EECCS-EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTT
T ss_pred Eeeccccccc------hheee-eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcc
Confidence 9998865321 13677 433333333211 1245555443 68999998643 111122111111111122
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
...+-..++..|+.-..+..-+ -|.|++||++++.++..-+-...+|.-.+-..+..=++.....|. |.--.++...
T Consensus 256 ~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~Gq--Vl~v~v~e~~ 333 (494)
T 1bpo_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ--VLSVCVEEEN 333 (494)
T ss_dssp STTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCE--EEEEEECTTT
T ss_pred cccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCce--EEEEEEcccc
Confidence 3345566888888878887777 899999999999998877666666666555555555555555554 6555555544
Q ss_pred e
Q 040987 685 I 685 (762)
Q Consensus 685 ~ 685 (762)
+
T Consensus 334 i 334 (494)
T 1bpo_A 334 I 334 (494)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.038 Score=62.07 Aligned_cols=381 Identities=10% Similarity=0.010 Sum_probs=202.0
Q ss_pred CceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec-----cCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 237 EPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH-----HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
.|.++....+|.+.++.. +.+..++..+++.. ..... ....|.++...+++..|-.|+. +.+..++..
T Consensus 147 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~-----~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~ 219 (758)
T 3ott_A 147 TIYSIIRTKDNQIYVGTY-NGLCRYIPSNGKFE-----GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPS 219 (758)
T ss_dssp CEEEEEECTTCCEEEEET-TEEEEEETTTTEEE-----EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETT
T ss_pred eEEEEEEcCCCCEEEEeC-CCHhhCccCCCceE-----EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCC
Confidence 466777777888776554 56778887765432 11111 1234888888877765555554 458888875
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~ 391 (762)
+++... ...+ ....|.++....+|...+ |+. +-+.+++..+++.....
T Consensus 220 ~~~~~~----------------------------~~~l--~~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~ 267 (758)
T 3ott_A 220 TGQIKQ----------------------------TEAF--HNNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHII 267 (758)
T ss_dssp TTEEEE----------------------------EEEE--EEEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEEC
T ss_pred CCeEEe----------------------------ccCC--CCCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEE
Confidence 543211 0111 123578888777776554 444 45888888776543221
Q ss_pred C--------CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEE
Q 040987 392 R--------IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL 463 (762)
Q Consensus 392 ~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 463 (762)
. ....|.++....+|.+-+ |+..| +.++.... ....+...... .......|.++.-..+|.+.+
T Consensus 268 ~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~~--~~~~~~~~~~~---~~~~~~~v~~i~~D~~g~lWi- 339 (758)
T 3ott_A 268 HDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYNS--ALQFIPISQIT---GTGDGNQFYSLFRDSKGFYWF- 339 (758)
T ss_dssp CCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCCC---CEEEEHHHHS---CSCCCCBEEEEEECTTCCEEE-
T ss_pred cCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccCC--ceeEEecccCC---CCCCCceEEEEEEcCCCCEEE-
Confidence 1 123588888887776544 54555 55443321 11111100000 000114678888888877554
Q ss_pred eecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee
Q 040987 464 RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF 543 (762)
Q Consensus 464 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~ 543 (762)
|+.+| +..++..++.... +...........-....|.++.-.++|++-+.. . +-+..||..+++...
T Consensus 340 Gt~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt----------~-~GL~~~~~~~~~~~~ 406 (758)
T 3ott_A 340 GGANG-LIRFTDPAGERHD-AIWYRMGDKTYPLSHNRIRHIYEDKEQQLWIAT----------D-GSINRYDYATRQFIH 406 (758)
T ss_dssp EETTE-EEEESCTTSSCCC-CEEECTTCSSSCCSCSCEEEEEECTTSCEEEEE----------T-TEEEEEETTTTEEEE
T ss_pred eeCCc-ceeecccccccce-eEEeccCCcCCCCCCCceEEEEECCCCCEEEEe----------C-CcHhhcCcCCCcEEE
Confidence 45555 6667665432111 110000000000013458888888888755533 2 358888887664321
Q ss_pred EEEEEeecC-CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccc--ccccCCceeeeeecccCCCCeEEEEEcCCC
Q 040987 544 TLSTIVYEP-HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQ--KDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620 (762)
Q Consensus 544 ~~~~~~~~~-h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg 620 (762)
+......+ .....|.++...++|++.+ |+..+-+.++|..+.... ..+.. ..............|.++...++|
T Consensus 407 -~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g 483 (758)
T 3ott_A 407 -YNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIA-EQNYSVHNGLSGMFINQIIPDNEG 483 (758)
T ss_dssp -EEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEEC-SEEECGGGTCSCSCEEEEEECTTS
T ss_pred -eecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceec-ccccccccccccceeeeEEEcCCC
Confidence 11100000 0134688888887776544 665556888886531100 00000 000000001123468899999999
Q ss_pred cEEEE-EcCCeEEEEeCCCCeEEEEecc---ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 621 SVLAV-AAETVITLWDPDRNVLVAVIGE---TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 621 ~~la~-~~d~~i~iwd~~~~~~~~~l~~---~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
++-+. ++.+-|..+|..+++....... ....+.++....+|.+.+. +..| |..+|..+++
T Consensus 484 ~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G---l~~~~~~~~~ 547 (758)
T 3ott_A 484 NVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG---VMRINPKDES 547 (758)
T ss_dssp CEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE---EEEECC--CC
T ss_pred CEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc---eEEEecCCCc
Confidence 87653 4455688899988765543211 1235778888888876654 4555 8888876654
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0014 Score=65.71 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=48.8
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee--eeeccCcCeEEEEEcCC---CcEEEEeec-C-----C
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK--ITLHHTKKLTVLAFHPT---QRIVAAGDV-T-----G 303 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~~~-d-----g 303 (762)
-.....++|.|||+++++...+.|.+++ +++.. .+.. ...........++|+|+ +..|.++.. . +
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~--~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLS--TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEE--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCcc--EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 4567899999999988887789999998 33321 1111 11223457899999998 555554433 2 5
Q ss_pred eEEEEeccC
Q 040987 304 RILIWRGFG 312 (762)
Q Consensus 304 ~v~vw~~~~ 312 (762)
.|..++...
T Consensus 106 ~v~r~~~~~ 114 (352)
T 2ism_A 106 QVVRLRHLG 114 (352)
T ss_dssp EEEEEEECS
T ss_pred EEEEEEeCC
Confidence 677777654
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.051 Score=60.99 Aligned_cols=370 Identities=8% Similarity=0.008 Sum_probs=198.9
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~ 314 (762)
...|.++....+|.+.+++ +..+..||..+.... .........|.++.. .+|. |..++.+ .+..++..+++
T Consensus 62 ~~~i~~i~~d~~g~lWigT-~~Gl~~yd~~~~~f~-----~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~ 132 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGT-DNGILVYNYRADRYE-----QPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRK 132 (758)
T ss_dssp SSCEEEEEEETTTEEEEEE-TTEEEEEETTTTEEC-----CCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCC
T ss_pred CceEEEEEEcCCCcEEEEe-CCCeEEEeCCCCEEE-----CcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCe
Confidence 3467888877777655544 556889998876542 111112335777654 3554 5555555 57888875543
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC--C
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP--R 392 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~--~ 392 (762)
... ... ..-.-....|.++....+|...+ ++.. -+..++..+++..... .
T Consensus 133 ~~~-~~~-------------------------~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~ 184 (758)
T 3ott_A 133 LTS-FDT-------------------------RRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPV 184 (758)
T ss_dssp EEE-ECH-------------------------HHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEEECCCC
T ss_pred EEE-ecc-------------------------CCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceEEecCCC
Confidence 211 000 00000123577887777776555 4443 5778887776543221 1
Q ss_pred ----CCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 393 ----IGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 393 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
....|.++....++..|.+++. +.+..++..+++.... .... ...|.++....+|.+.+ |+.+|
T Consensus 185 ~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~-~~l~---------~~~i~~i~~d~~g~lWi-gT~~G 252 (758)
T 3ott_A 185 HSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQT-EAFH---------NNSIKSLALDGNGDLLA-GTDNG 252 (758)
T ss_dssp CTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEE-EEEE---------EEEEEEEEECTTCCEEE-EETTE
T ss_pred ccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEec-cCCC---------CCeEEEEEEcCCCCEEE-EeCCc
Confidence 1224788888777776666664 5688899877654322 1111 14678888888877554 44554
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
+.+++..+... ..+..... .+..-....|.++....+|.+-+... .| +.++... . ........
T Consensus 253 -l~~~~~~~~~~-~~~~~~~~--~~~~l~~~~i~~i~~D~~g~lWiGT~----------~G-l~~~~~~-~-~~~~~~~~ 315 (758)
T 3ott_A 253 -LYVYHNDTTPL-QHIIHDSR--NIQSLTNNIIWNIFADQEHNIWLGTD----------YG-ISLSRYN-S-ALQFIPIS 315 (758)
T ss_dssp -EEEECCTTSCC-EEECCCTT--CTTSCSCSCEEEEEECTTCCEEEEES----------SS-EEEECCC-C--CEEEEHH
T ss_pred -eeEEecCCCcE-EEEEcCCC--CcCcCCcCeEEEEEEcCCCCEEEEeC----------Cc-ccccccC-C-ceeEEecc
Confidence 88888766532 11111100 00011145688888888887555442 24 3333221 1 11111000
Q ss_pred e--ecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccc--cccCCceeeeeecccCCCCeEEEEEcCCCcEEE
Q 040987 549 V--YEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK--DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA 624 (762)
Q Consensus 549 ~--~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la 624 (762)
. .... ...|.++.-..+|.+.+. +.+| +..++..++.... ..... ..........|.++.-..+|++-+
T Consensus 316 ~~~~~~~-~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lWi 388 (758)
T 3ott_A 316 QITGTGD-GNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYRMG----DKTYPLSHNRIRHIYEDKEQQLWI 388 (758)
T ss_dssp HHSCSCC-CCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEECTT----CSSSCCSCSCEEEEEECTTSCEEE
T ss_pred cCCCCCC-CceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEeccC----CcCCCCCCCceEEEEECCCCCEEE
Confidence 0 0011 346888888888876554 4555 6566654432111 00000 000011235688888888887554
Q ss_pred EEcCCeEEEEeCCCCeEEEEe--cc----ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 625 VAAETVITLWDPDRNVLVAVI--GE----TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 625 ~~~d~~i~iwd~~~~~~~~~l--~~----~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
|+++-+..||..+++..... .. ....|.++...++|.+.+ ++..+- |..+|..
T Consensus 389 -gt~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~G--l~~~~~~ 447 (758)
T 3ott_A 389 -ATDGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGG--IFVVDKH 447 (758)
T ss_dssp -EETTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSC--EEEEEHH
T ss_pred -EeCCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCc--eEEEccc
Confidence 44668999999887654322 11 123478888777776544 554433 8888854
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.85 E-value=6.4e-05 Score=82.92 Aligned_cols=241 Identities=8% Similarity=-0.117 Sum_probs=137.3
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCc
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGL 448 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~ 448 (762)
...|+..++.+.+...+......+..++|++.+..|+.+.. .+.|+.+++... .....+... -..
T Consensus 385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~----------~~~ 454 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----------IQA 454 (699)
T ss_dssp TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC----------C--
T ss_pred ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC----------CCC
Confidence 35788888887776555544556778899987777776643 568888888751 111111100 023
Q ss_pred eeeEEEeCCCC-EEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 449 CRDIAFNHDGG-LVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 449 v~~~~~s~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
...+++.+.+. ++++-...+.|.++++..... ..+... . ......++++|.+.+|+.+... .
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~-~~l~~~-~--------~~~P~giavDp~~g~ly~td~~-------~ 517 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KTLFRE-Q--------GSKPRAIVVDPVHGFMYWTDWG-------T 517 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE-EEECCC-S--------SCCCCCEECCSSSSCCEECCCS-------S
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCce-EEEEeC-C--------CCCcceEEEccCCCcEEEcccC-------C
Confidence 46788886544 444445667899999865432 222110 0 1235678999977766665421 2
Q ss_pred eeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCceeeeeeccc
Q 040987 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 606 (762)
.+.|..+++........+ ... ....+.|+|+|++..|+.+. ..+.|..+++.......... ...
T Consensus 518 ~~~I~~~~~dG~~~~~l~-----~~~-l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~---------~~~ 582 (699)
T 1n7d_A 518 PAKIKKGGLNGVDIYSLV-----TEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE---------DEK 582 (699)
T ss_dssp SCCEEBCCSSSCCCCEES-----CSS-CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC---------CSS
T ss_pred CCeEEEEeCCCCCeeEEE-----eCC-CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe---------cCC
Confidence 267777777654322211 111 23456799999866655554 55689999987543322221 001
Q ss_pred CCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCCCeEEEEeccccCceeEEEEe
Q 040987 607 KKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDRNVLVAVIGETLTPIMNMSFV 658 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s 658 (762)
.......|++..+ .|+.. . .+.|..++..+|+.+..+.........+++.
T Consensus 583 ~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~i~~~~~~P~~i~v~ 634 (699)
T 1n7d_A 583 RLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLF 634 (699)
T ss_dssp SCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEECCCTTCSSCCCCCBC
T ss_pred cCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEEeecCCCCCcEEEEe
Confidence 1123344555443 44444 3 7899999999998887775433334444443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0067 Score=60.62 Aligned_cols=246 Identities=12% Similarity=0.074 Sum_probs=125.1
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeee--eeeccCcCeEEEEEcCC---CcEEEEeec----C---
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRK--ITLHHTKKLTVLAFHPT---QRIVAAGDV----T--- 302 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~---~~~l~~~~~----d--- 302 (762)
-.....++|.|||+++++..++.|.+++. +++ . .+.. ...........++++|+ +..|.++.. +
T Consensus 28 l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~--~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-K--LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-E--EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-e--EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 45678999999999888877899999973 333 1 1111 11223456889999997 445544432 3
Q ss_pred -CeEEEEeccCCc-eeecccccccccccccccCCCCcccCCccccceeee-ccccceeEEEEecCCCEEEEEec------
Q 040987 303 -GRILIWRGFGDR-TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEVSVLIFSSDGAYLYSGGK------ 373 (762)
Q Consensus 303 -g~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~------ 373 (762)
+.|..|+..... .+.... ..+..+. ........++|.|||.+.++.+.
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~-----------------------~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVK-----------------------TLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRL 160 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEE-----------------------EEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGG
T ss_pred ceEEEEEEECCCCcCcCccE-----------------------EEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCcc
Confidence 567777765431 000000 0001111 11112457999999987666442
Q ss_pred -------CCeEEEEecCCCc---------eeccCCCCCCeEEEEeCC-CCCeEEEEecCC---cEEEEEcCCceEEE---
Q 040987 374 -------EGVLVVWQLDTGK---------KKFLPRIGSPLLYFTESP-DPSLSSISCADN---QVHLLKMPSMEIIR--- 430 (762)
Q Consensus 374 -------dg~i~~wd~~~~~---------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~d~---~i~i~d~~~~~~~~--- 430 (762)
.|.|..++.+..- .+....+ .....++|+| +|.++++-...+ .|.+.. .+....
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~ 237 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPL 237 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTT
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCc
Confidence 2456666655320 1111222 2345788998 555444322211 133222 111000
Q ss_pred -----EEccCCCCCCCCCcccCceeeEEEe-------CCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 431 -----SISGIKLPCPLPEEYKGLCRDIAFN-------HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 431 -----~~~~~~~~~~~~~~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
...+...+.............++|. .+|++++.....+.|...++................ .
T Consensus 238 ~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~------~ 311 (354)
T 3a9g_A 238 ATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV------F 311 (354)
T ss_dssp CCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT------S
T ss_pred ccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC------C
Confidence 0000000000000011356778883 567666666667788888887532222111111110 3
Q ss_pred eeEEEEEEecCCCeEEEE
Q 040987 499 VVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~ 516 (762)
..+..+++.|||.+.++.
T Consensus 312 ~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 312 GRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CCEEEEEECTTSCEEEEE
T ss_pred CCeeEEEECCCCcEEEEE
Confidence 468899999999766655
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0083 Score=57.76 Aligned_cols=222 Identities=10% Similarity=0.054 Sum_probs=125.8
Q ss_pred CeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEE---eCCCCEEEEeec----
Q 040987 396 PLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAF---NHDGGLVALRAE---- 466 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~---- 466 (762)
-..++.|.+....++.++ ..+.|..|+...+..... +.+.. ..-.....+..+.+ .|+++++++...
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s----~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGAS----SNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTC----CSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCcc----ccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 345688877666666665 689999999986544333 22100 00000124578999 688777775431
Q ss_pred ---------CceEEEEEcC---CCCceeeEEeeccccc--CC-CCcceeEEEEEEecCCCeEEEEeeeccccCCCce-eE
Q 040987 467 ---------NYCIHFYSLL---DDRGISEVQVCERNHQ--PG-DDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL-VC 530 (762)
Q Consensus 467 ---------dg~i~i~d~~---~~~~~~~~~~~~~~~~--~~-~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d-~~ 530 (762)
+..|..||+. +++.+........... .. .........++..++|+..++.+ .. +.
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s---------~~~~~ 160 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA---------LGMPA 160 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE---------ESSCE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC---------CCCCe
Confidence 5779999999 7777665543211000 00 00024588999999999999887 33 55
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeee-cc-cCC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV-GS-YKK 608 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~-~~~ 608 (762)
|...+.+... ...+.............+.++++|+|+.|++....|.+..+|+...... .++ ... .. ...
T Consensus 161 I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~------~~~~G~~~~~ 232 (334)
T 2p9w_A 161 IARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEP------VKINGDFGTL 232 (334)
T ss_dssp EEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEE------CEESSCCCCC
T ss_pred EEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eec------ccccCCcccc
Confidence 5555555432 2211110001111334679999999998888877999999998832110 010 000 00 011
Q ss_pred CCeEEE-EEcCCCcEEEEEc--CCeEEEEeCCC
Q 040987 609 KAMTAA-AFSADGSVLAVAA--ETVITLWDPDR 638 (762)
Q Consensus 609 ~~i~~~-~~s~dg~~la~~~--d~~i~iwd~~~ 638 (762)
.....| ..-.+|+.|+++. .+.+.+.+.+.
T Consensus 233 ~~~dgilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 233 SGTEKIVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp TTEEEEEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred cCcccccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 223333 3335788866554 66666666554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0083 Score=59.23 Aligned_cols=219 Identities=11% Similarity=0.036 Sum_probs=124.4
Q ss_pred ceeeEEEeCCCCEEEEe------------ecCceEEEEEcCCCC-ceeeEEeecccccCCCCcceeEEEEEEec--CCC-
Q 040987 448 LCRDIAFNHDGGLVALR------------AENYCIHFYSLLDDR-GISEVQVCERNHQPGDDVTVVVTLVALSQ--DGS- 511 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~------------~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~- 511 (762)
...++++.|+|..++++ ..+|.|.++|..+.. ...++....... +........+.+.+ ++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~---~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTL---DISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSC---CGGGCCEEEEEEEECTTCCE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCC---CcCceeeeeeEEEECCCCcE
Confidence 34677788877554444 168999999987432 223333221001 00134566777766 454
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---C------------
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---G------------ 576 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---d------------ 576 (762)
+|.++... ..+..|.+|+++.......+... +.+.+-...+.+++.++|.+.++... |
T Consensus 128 ~L~Vvnh~------~~~s~ielf~~d~~~~~~~~~~~-~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~ 200 (355)
T 3sre_A 128 YLLVVNHP------GSSSTVEVFKFQEEEKSLLHLKT-IRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 200 (355)
T ss_dssp EEEEEECS------TTCCEEEEEEEETTTTEEEEEEE-ECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTC
T ss_pred EEEEEECC------CCCCeEEEEEEECCCCEEEEEec-cccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccC
Confidence 44444321 13578999998876544433322 23333567899999999998776541 1
Q ss_pred CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCC-CeE--EEEeccccCc
Q 040987 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDR-NVL--VAVIGETLTP 651 (762)
Q Consensus 577 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~-~~~--~~~l~~~~~~ 651 (762)
..=++|.+..++..... ..-...+.++||||++.|.++. .+.|..|+++. ++. ...+. ..+.
T Consensus 201 ~~g~vyr~d~~~~~~~~------------~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~-~~g~ 267 (355)
T 3sre_A 201 AWSFVTYYSPNDVRVVA------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTL 267 (355)
T ss_dssp CCEEEEEECTTCCEEEE------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSE
T ss_pred CccEEEEEECCeEEEee------------cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe-CCCC
Confidence 12234433332211111 1124567899999999888875 78999999863 322 22332 2344
Q ss_pred eeEEEEeC-CCCEEEEEEcCCCCeEEEEECC--CCceeeEEE
Q 040987 652 IMNMSFVG-SSEYLVATSWGSKPQLSVWNMS--KLSISWSYL 690 (762)
Q Consensus 652 v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~--~~~~~~~~~ 690 (762)
.-.+++.+ +|.+.+++..++. +|..|+-+ .++.+.++.
T Consensus 268 PDGi~vD~e~G~lwva~~~~g~-~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 268 VDNISVDPVTGDLWVGCHPNGM-RIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEEECTTTCCEEEEEESCHH-HHHSCCTTSCCCEEEEEEE
T ss_pred CceEEEeCCCCcEEEEecCCce-EEEEECCCCCCCCEEEEEE
Confidence 67899999 5998887776651 24444433 244444444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.016 Score=57.98 Aligned_cols=253 Identities=11% Similarity=-0.008 Sum_probs=124.2
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC---CCEEEEeec-C----
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD---GGLVALRAE-N---- 467 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~-d---- 467 (762)
....++|.|+|++++ +...+.|.+++ .++. ..+.... . ..........++++|+ +..|.++.. .
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~-~~~~~~~--v--~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRL-STYAELS--V--YHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEE-EEEEECC--C--CCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCc-cEeecce--E--eecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 467899999998544 55679999998 3432 2111110 0 0001246789999998 555554443 2
Q ss_pred -ceEEEEEcCCCCceeeEEeeccccc--CCCCcceeEEEEEEecCCCeEEEEeeecc----ccCCCceeEEEEEEecCC-
Q 040987 468 -YCIHFYSLLDDRGISEVQVCERNHQ--PGDDVTVVVTLVALSQDGSLMSTVDIKLA----EEGIGSLVCLKFWVSGTQ- 539 (762)
Q Consensus 468 -g~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~~~~----~~~~~~d~~i~iwd~~~~- 539 (762)
+.|..++...+. +........... ... ......++|.|||.+.++.+.... .+.....+.|.-++.+..
T Consensus 104 ~~~v~r~~~~~~~-~~~~~~l~~~~p~~~~~--~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~ 180 (352)
T 2ism_A 104 RNQVVRLRHLGER-GVLDRVVLDGIPARPHG--LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEP 180 (352)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEEEECCCTTC--CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSB
T ss_pred ccEEEEEEeCCCC-cCceEEEEEeCCCCCCC--CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCC
Confidence 678888876442 111111111000 001 112358999999976666431100 000002256666665531
Q ss_pred -----------CceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCCCcE------EEEEcccccccccc------cC
Q 040987 540 -----------NKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYGGDF------KVWICNDELQQKDL------QS 595 (762)
Q Consensus 540 -----------~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~dg~i------~iwd~~~~~~~~~~------~~ 595 (762)
.....+. .++ . ....++|+| ++.++++-.....+ .|.-+..+....-. ..
T Consensus 181 p~~npf~~~~~~~~~i~a----~G~-r-np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~ 254 (352)
T 2ism_A 181 APGNPFLGRRGARPEVYS----LGH-R-NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGND 254 (352)
T ss_dssp CTTCTTTTCTTSCTTEEE----ECC-S-EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCC
T ss_pred CCCCcccCCCCCCccEEE----EcC-C-CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCC
Confidence 0111111 233 2 356789999 66655554333321 23333322210000 00
Q ss_pred Cce-eeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCe-------EEEEeccccCceeEEEEeCCCCEEEE
Q 040987 596 SGW-SCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNV-------LVAVIGETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 596 ~~~-~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~-------~~~~l~~~~~~v~~~~~s~dg~~l~s 666 (762)
... .+.... .+......++| .+|.++++.. .+.|...+++... ....+ .....+..+++.|||.+.++
T Consensus 255 ~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 255 PRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp TTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEE
T ss_pred CCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-ccCCCeeEEEECCCCcEEEE
Confidence 000 000011 12234567888 5676655554 7788888776432 12222 22356899999999987776
Q ss_pred EE
Q 040987 667 TS 668 (762)
Q Consensus 667 ~~ 668 (762)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 64
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.021 Score=56.94 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=39.1
Q ss_pred cceeEEEEe-------cCCCEEEEEecCCeEEEEecCCC-ce----eccCCCCCCeEEEEeCCCCCeEEEE
Q 040987 354 SEVSVLIFS-------SDGAYLYSGGKEGVLVVWQLDTG-KK----KFLPRIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 354 ~~v~~~~~s-------~~g~~l~s~~~dg~i~~wd~~~~-~~----~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (762)
.....++|. .+|+++++.-..+.|...+++.. +. ..+......+..+++.|||.++++.
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~ 329 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST 329 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence 356778883 56767766666678888888753 22 1222234578999999999766654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00019 Score=79.17 Aligned_cols=230 Identities=9% Similarity=-0.051 Sum_probs=130.9
Q ss_pred cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCC---CceeeEEeecc
Q 040987 414 ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDD---RGISEVQVCER 489 (762)
Q Consensus 414 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~---~~~~~~~~~~~ 489 (762)
..+.|+..++.+.+....+... ..+..++|++.+..|+.+. ..+.|+.+++... .....+.. .
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~-----------~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~--~ 450 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS--R 450 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCC-----------TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC--S
T ss_pred CccceEEEeCCCCcceeeeccC-----------cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe--C
Confidence 4467888888765544333222 3557899998776666553 4578888888651 11111100 0
Q ss_pred cccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe
Q 040987 490 NHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569 (762)
Q Consensus 490 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~ 569 (762)
. ......+++.+.+..|+.+.. ..+.|.++++........+ ... ......++++|.+.+
T Consensus 451 ~-------~~~P~glavD~~~g~LY~tD~--------~~~~I~v~d~dg~~~~~l~-----~~~-~~~P~giavDp~~g~ 509 (699)
T 1n7d_A 451 D-------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLF-----REQ-GSKPRAIVVDPVHGF 509 (699)
T ss_dssp C-------C--CCCEECCCSSSBCEECCT--------TTSCEEEEBSSSCCEEEEC-----CCS-SCCCCCEECCSSSSC
T ss_pred C-------CCCcceEEEEeeCCcEEEEec--------cCCeEEEEecCCCceEEEE-----eCC-CCCcceEEEccCCCc
Confidence 0 123456888866555555432 5578888888765432221 111 234567899997665
Q ss_pred EEEEeC-C-CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEe
Q 040987 570 AVSSSY-G-GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 570 l~~~~~-d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l 645 (762)
|+.+.. . +.|.++++......... .......+.|+|+|++..|..+. .+.|..+++........+
T Consensus 510 ly~td~~~~~~I~~~~~dG~~~~~l~-----------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~ 578 (699)
T 1n7d_A 510 MYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL 578 (699)
T ss_dssp CEECCCSSSCCEEBCCSSSCCCCEES-----------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEEC
T ss_pred EEEcccCCCCeEEEEeCCCCCeeEEE-----------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEE
Confidence 555443 2 67887777643322211 11224556899999877776664 789999999754333333
Q ss_pred cc--ccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEE
Q 040987 646 GE--TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 646 ~~--~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
.. .......|++..+ .++++....+. |..++..+|+.+..+..
T Consensus 579 ~~~~~~~~P~glavd~~-~lywtd~~~~~--V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 579 EDEKRLAHPFSLAVFED-KVFWTDIINEA--IFSANRLTGSDVNLLAE 623 (699)
T ss_dssp CCSSSCSSCCCCEEETT-EEEEECSTTTC--EEEEETTTEEEEECCCT
T ss_pred ecCCcCCCceEeEEECC-EEEEEeCCCCe--EEEEEccCCCceEEeec
Confidence 21 1222345666554 33334433444 99999888877665543
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.04 Score=53.30 Aligned_cols=245 Identities=12% Similarity=0.018 Sum_probs=140.0
Q ss_pred ECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC--------------CeE
Q 040987 243 ISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT--------------GRI 305 (762)
Q Consensus 243 ~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d--------------g~v 305 (762)
|+++|..|..+. ++.|...+.+..... ++... .+--+++++.+|+..... ..|
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~-----~l~~~-----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~I 90 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIH-----KLSND-----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSL 90 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCE-----EEEEE-----EEEEEEECSSEEEEEEECC------CCSSCCSEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCE-----EccCC-----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeE
Confidence 346788887553 677777777665532 22211 134567899988877543 356
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe----cCCeEEEEe
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG----KEGVLVVWQ 381 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~dg~i~~wd 381 (762)
+..++.+.+. ..+... ....|++++++|+... ....|+..+
T Consensus 91 y~i~~dg~~~-------------------------------~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~ 135 (302)
T 3s25_A 91 CRIKRNGHGS-------------------------------TVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIR 135 (302)
T ss_dssp EEEETTSCCC-------------------------------EEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred EEEeCCCCcc-------------------------------eEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence 6666655431 111111 1236788899988775 345677778
Q ss_pred cCCCceeccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCE
Q 040987 382 LDTGKKKFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGL 460 (762)
Q Consensus 382 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 460 (762)
++......+..+.. ..++++++.|+..+. ...|.+.++..+.....+.+. . ...+.|++.+
T Consensus 136 ~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~-------------~-~~~~~P~g~~ 197 (302)
T 3s25_A 136 IDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN-------------C-YKPVVLDDTN 197 (302)
T ss_dssp TTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC-------------E-EEEEEEETTE
T ss_pred CCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC-------------c-cceeeecCCE
Confidence 77655554444432 456788988887765 567888888776554444321 1 2346699998
Q ss_pred EEEeecC--ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecC
Q 040987 461 VALRAEN--YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGT 538 (762)
Q Consensus 461 l~~~~~d--g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~ 538 (762)
|+....+ ..|..-++..... ..+. ...+ ..|+|++++|..+... ....|..-+++.
T Consensus 198 iy~t~~~~~~~I~~~~ldG~~~-~~Lt------------~~~~--~~~~~~g~~Iy~~~~~-------~~~~i~~~~~DG 255 (302)
T 3s25_A 198 VYYMDVNRDNAIVHVNINNPNP-VVLT------------EANI--EHYNVYGSLIFYQRGG-------DNPALCVVKNDG 255 (302)
T ss_dssp EEEEEGGGTTEEEEECSSSCCC-EECS------------CSCE--EEEEEETTEEEEEECS-------SSCEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEECCCCCe-EEEe------------CCCc--ceEEECCCEEEEEECC-------CCcEEEEEECCC
Confidence 8877644 3566666655432 1211 1122 3488899988876421 346777777766
Q ss_pred CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEE
Q 040987 539 QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWI 583 (762)
Q Consensus 539 ~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd 583 (762)
.... .+. ...+. .+++.+.+|+.... .+.|...+
T Consensus 256 ~~r~-~l~--------~~~~~--~i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 256 TGFK-ELA--------KGEFC--NINVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp CCCE-EEE--------ESCEE--EEEECSSEEEEEETTTCCEEEEE
T ss_pred CccE-Eee--------CCccc--eEEEeCCEEEEEECCCCeEEEEE
Confidence 5432 222 11233 34445666666553 24444333
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.055 Score=53.68 Aligned_cols=235 Identities=11% Similarity=0.175 Sum_probs=144.8
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
....|.|.|+..+..+...... --+.-.+|..+.||.-....+.|+|+++.+.. +... ....|.-=.|-.
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~----AdsAIMnP~~~iiALrag~~lQiFnle~K~kl-----ks~~-~~e~VvfWkWis 115 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAHT-MTDDVTFWKWIS 115 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECC----CSEEEECSSSSCEEEEETTEEEEEETTTTEEE-----EEEE-CSSCCCEEEEEE
T ss_pred CCCeEEEEECCCCCcceecccc----cceeeeCCCCcEEEEecCCeEEEEchHHhhhh-----ccee-cCCCceEEEecC
Confidence 4448999999887766222222 23556789999998777999999999988743 2222 233555556654
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc----cceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----SEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~ 367 (762)
+. .|+.-+ +..|+-|++.+.. .+.+.+..|. ..|..-..+++.++
T Consensus 116 ~~-~l~lVT-~taVyHWsi~~~s-----------------------------~P~kvFdR~~~L~~~QIInY~~d~~~kW 164 (494)
T 1bpo_A 116 LN-TVALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (494)
T ss_dssp TT-EEEEEC-SSEEEEEESSSSC-----------------------------CCEEEEECCGGGTTCEEEEEEECTTSSE
T ss_pred CC-eEEEEc-CCeeEEecccCCC-----------------------------CchhheecchhcccceEEEEEECCCCCe
Confidence 44 344443 5579999986532 2233443332 35666677888888
Q ss_pred EEEEec-------CCeEEEEecCCCceeccCCCCCCeEEEEeCCCC---CeEEEEec---CCcEEEEEcCCc-eEEEEEc
Q 040987 368 LYSGGK-------EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP---SLSSISCA---DNQVHLLKMPSM-EIIRSIS 433 (762)
Q Consensus 368 l~s~~~-------dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~---d~~i~i~d~~~~-~~~~~~~ 433 (762)
++..+- .|.+.+|..+.+..+.+.+|......+.+..+. +.+..+.. .+.++|.++... .--..+.
T Consensus 165 ~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~ 244 (494)
T 1bpo_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (494)
T ss_dssp EEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCC
T ss_pred EEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCcc
Confidence 775442 378999999988877777776544444433221 23333333 267888887532 0000110
Q ss_pred cCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 434 GIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 434 ~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.....+. .++...+...++.+++.-..+...+.-|.+++||+.++..+..-...
T Consensus 245 kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs 299 (494)
T 1bpo_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 299 (494)
T ss_dssp CEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence 0000000 11222355678889998888999999999999999999887765543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.043 Score=54.15 Aligned_cols=195 Identities=12% Similarity=0.071 Sum_probs=114.1
Q ss_pred eeeccccceeEEEEecCCCEEEEEe------------cCCeEEEEecCC--Cceec--cCC-----CCCCeEEEEeCC--
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYSGG------------KEGVLVVWQLDT--GKKKF--LPR-----IGSPLLYFTESP-- 404 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s~~------------~dg~i~~wd~~~--~~~~~--~~~-----~~~~v~~~~~s~-- 404 (762)
.+.+-......+...|+|..+++++ .+|.|.++|.++ ++... ... ..-....+.+.+
T Consensus 44 ~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~ 123 (355)
T 3sre_A 44 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDD 123 (355)
T ss_dssp ECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECT
T ss_pred EeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECC
Confidence 3333233456677888875555441 689999999874 33322 221 123566677644
Q ss_pred CCC-eEEEEec---CCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-----------
Q 040987 405 DPS-LSSISCA---DNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA----------- 465 (762)
Q Consensus 405 ~~~-~l~~~~~---d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------- 465 (762)
++. +|+++.. +..+.+|++... ..+..+.+.. . ....++++.++|++.++..
T Consensus 124 dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~--~-------~~pND~~v~~~G~fyvt~~~~ftd~~~~~~ 194 (355)
T 3sre_A 124 DNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL--L-------PSVNDIVAVGPEHFYATNDHYFIDPYLKSW 194 (355)
T ss_dssp TCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT--C-------SSEEEEEEEETTEEEEEESCSCSSHHHHHH
T ss_pred CCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCC--C-------CCCceEEEeCCCCEEecCCcEeCCcccccc
Confidence 454 3444432 456777776542 2233444322 1 5678999999998777653
Q ss_pred ------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 466 ------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 466 ------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
..|.|+.+|. ++ ...+... -...+.++|+||++.|..+.. ..+.|..|++...
T Consensus 195 e~~~~~~~g~vyr~d~--~~-~~~~~~~----------l~~pNGia~spDg~~lYvadt--------~~~~I~~~~~~~~ 253 (355)
T 3sre_A 195 EMHLGLAWSFVTYYSP--ND-VRVVAEG----------FDFANGINISPDGKYVYIAEL--------LAHKIHVYEKHAN 253 (355)
T ss_dssp HHHTTCCCEEEEEECT--TC-CEEEEEE----------ESSEEEEEECTTSSEEEEEEG--------GGTEEEEEEECTT
T ss_pred hhhccCCccEEEEEEC--Ce-EEEeecC----------CcccCcceECCCCCEEEEEeC--------CCCeEEEEEECCC
Confidence 1255666655 22 2222111 234789999999998888763 5679999999753
Q ss_pred CceeEEEEEeecCCCCCceEEEEEcC-CCCeEEEEeCC
Q 040987 540 NKEFTLSTIVYEPHRDAGISAVAFHP-NRRAAVSSSYG 576 (762)
Q Consensus 540 ~~~~~~~~~~~~~h~~~~v~~~~~sp-d~~~l~~~~~d 576 (762)
........ + .. .+..-.+++.+ +|++.+++..+
T Consensus 254 g~l~~~~~--~-~~-~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 254 WTLTPLRV--L-SF-DTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp SCEEEEEE--E-EC-SSEEEEEEECTTTCCEEEEEESC
T ss_pred CcEecCEE--E-eC-CCCCceEEEeCCCCcEEEEecCC
Confidence 33222221 1 12 34567889998 58887766544
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.044 Score=53.02 Aligned_cols=215 Identities=11% Similarity=0.057 Sum_probs=124.5
Q ss_pred CCCCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC--------------
Q 040987 404 PDPSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-------------- 467 (762)
Q Consensus 404 ~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------------- 467 (762)
.++..|+.... ++.|...+..... ...+.. . .+--+++++.+|..+...
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~------------~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~ 87 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN------------D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDR 87 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE------------E--EEEEEEECSSEEEEEEECC------CCSSCCS
T ss_pred EeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC------------C--ceeeEEEcCCEEEEEECCCCcccccceeccCC
Confidence 46666666542 4556666654333 333322 1 234568889988887653
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
..|+..++...+.. .+. .. ....|++++++|+..... ......|...++...... .+.
T Consensus 88 ~~Iy~i~~dg~~~~-~l~------------~~--~~~~~s~~g~~Iy~~~~~-----~~~~~~Iy~~~~dGs~~~-~lt- 145 (302)
T 3s25_A 88 NSLCRIKRNGHGST-VLD------------PD--PCIYASLIGNYIYYLHYD-----TQTATSLYRIRIDGEEKK-KIK- 145 (302)
T ss_dssp EEEEEEETTSCCCE-EEE------------CS--CEEEEEEETTEEEEEEES-----SSSCEEEEEEETTSCCCE-EEE-
T ss_pred CeEEEEeCCCCcce-Eee------------cC--CccEEEEeCCEEEEEeec-----CCCCceEEEEECCCCCeE-EEe-
Confidence 46777777665422 111 11 123788899998877510 004567777777754432 231
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeC-CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSY-GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
.+ .+ .+++|+++.|+..+. ...|.+.++.++....... +... ..++|++++|+..
T Consensus 146 ----~~---~~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--------------~~~~-~~~~P~g~~iy~t 201 (302)
T 3s25_A 146 ----NH---YL--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--------------CNCY-KPVVLDDTNVYYM 201 (302)
T ss_dssp ----SS---CC--CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--------------SCEE-EEEEEETTEEEEE
T ss_pred ----CC---Cc--eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--------------CCcc-ceeeecCCEEEEE
Confidence 12 22 457888998887765 5678888887665433321 1222 3466999999876
Q ss_pred c---CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 627 A---ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 627 ~---d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
. ...|..-+++.... ..|.. ..+ ..|+|++++|..++..+...|..-+++...
T Consensus 202 ~~~~~~~I~~~~ldG~~~-~~Lt~--~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~ 257 (302)
T 3s25_A 202 DVNRDNAIVHVNINNPNP-VVLTE--ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG 257 (302)
T ss_dssp EGGGTTEEEEECSSSCCC-EECSC--SCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred EcCCCcEEEEEECCCCCe-EEEeC--CCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence 5 24787778876653 34432 223 448888999987754333346666766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.064 Score=52.65 Aligned_cols=255 Identities=11% Similarity=0.018 Sum_probs=124.1
Q ss_pred ccCCCceEEEECCCCCEEEEEe-CCeEEEEEccCchhhhheee---eeeeccCcCeEEEEEcCC---CcEEEEe---ecC
Q 040987 233 AEMKEPQVITISSSGKYFGIRK-QRKLLIWKVPDVEAERVVMR---KITLHHTKKLTVLAFHPT---QRIVAAG---DVT 302 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~~-~~~i~iwd~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~---~~~l~~~---~~d 302 (762)
..-...+.++|.|||+++++.. .+.|++++..+++.. .+. ............|+|+|+ +.+|... ..+
T Consensus 29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~--~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT--ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe--eecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 3355778999999999888876 899999986655432 111 122234567899999996 3344432 234
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccc-cceeee-ccccceeEEEEecCCCEEEEEec-------
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDAD-LCTTWH-WHPSEVSVLIFSSDGAYLYSGGK------- 373 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~h~~~v~~~~~s~~g~~l~s~~~------- 373 (762)
+.|.-|.......-. . ...+.+ .+..+. .....-..+.|.|||.+.++.+.
T Consensus 107 ~~v~R~~~~~~~~~~-----------------~---~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~ 166 (347)
T 3das_A 107 NRIVRMLYDEKKPSG-----------------E---QLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLS 166 (347)
T ss_dssp EEEEEEEBCTTSCTT-----------------C---CBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGT
T ss_pred CEEEEEEeCCCCccc-----------------c---cCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccc
Confidence 555555554321000 0 000000 011111 11123457999999987777542
Q ss_pred ------CCeEEEEecCCCc---------eeccCCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEE--EEccC
Q 040987 374 ------EGVLVVWQLDTGK---------KKFLPRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIR--SISGI 435 (762)
Q Consensus 374 ------dg~i~~wd~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~--~~~~~ 435 (762)
.|.|.-.+.+..- .+....+. ....++|+|+|.+.++-. .++.-.|-.+..+.... ...+.
T Consensus 167 qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~ 245 (347)
T 3das_A 167 QDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGK 245 (347)
T ss_dssp TCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSS
T ss_pred cCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCC
Confidence 2455555554320 11222222 345688888776554421 12211222222211000 00000
Q ss_pred C--CCCCCCC----cccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 436 K--LPCPLPE----EYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 436 ~--~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
. .....+. .+......++|. ++..+......+.|....+.......+......+ ....+..++..||
T Consensus 246 ~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~------~~gR~~dv~~~pD 318 (347)
T 3das_A 246 GGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEG------EYGRLRTVAPAGG 318 (347)
T ss_dssp CCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTT------TSSCEEEEEEEET
T ss_pred CCCccccCCcEecCCCCCCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecC------CCCCccEEEECCC
Confidence 0 0000000 001234566665 3555555555566666666544321111111111 1457999999999
Q ss_pred CCeEEEEe
Q 040987 510 GSLMSTVD 517 (762)
Q Consensus 510 g~~l~~~~ 517 (762)
|.++++.+
T Consensus 319 G~lyv~td 326 (347)
T 3das_A 319 DKLWLVTS 326 (347)
T ss_dssp TEEEEEEC
T ss_pred CcEEEEEc
Confidence 98777765
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.085 Score=52.59 Aligned_cols=243 Identities=12% Similarity=0.071 Sum_probs=122.8
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---c----CCCCCCeEEEEeCCC---CCeEEEEec--------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---L----PRIGSPLLYFTESPD---PSLSSISCA-------- 414 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~----~~~~~~v~~~~~s~~---~~~l~~~~~-------- 414 (762)
-.....++|.|+|+.|+.+...|.|++++........ + .........++++|+ +..|+++..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 4456899999999834455567999999854321111 1 112345789999996 555554432
Q ss_pred CCcEEEEEcCCc--e--EEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-------------CceEEEEEcC
Q 040987 415 DNQVHLLKMPSM--E--IIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-------------NYCIHFYSLL 476 (762)
Q Consensus 415 d~~i~i~d~~~~--~--~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~i~d~~ 476 (762)
...|..++.... . ..+. +..... ..... .....++|.|||.+.++.+. .|.|.-++..
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~--~~~~~--h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d 172 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPK--LSTGN--HFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ 172 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSC--CBSSS--CCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCC--CCCCc--ccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence 235666666532 1 1111 222110 00000 22467999999976555433 2456666654
Q ss_pred CCC------------ceeeEEeecccccCCCCcceeEEEEEEec-CCCeEEEEeeeccccCCCceeEEEEEEecCCCc--
Q 040987 477 DDR------------GISEVQVCERNHQPGDDVTVVVTLVALSQ-DGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-- 541 (762)
Q Consensus 477 ~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-- 541 (762)
..- ....+... ......++|+| +|+++++-. . .++.=.|.-+..+..
T Consensus 173 G~~p~~npf~~~~~~~~~i~a~G----------~rnp~gl~~d~~~g~l~~~d~-g-------~~~~dei~~i~~G~nyG 234 (353)
T 2g8s_A 173 GEIPDDNPFIKESGVRAEIWSYG----------IRNPQGMAMNPWSNALWLNEH-G-------PRGGDEINIPQKGKNYG 234 (353)
T ss_dssp SCCCTTCTTTTSTTSCTTEEEEC----------CSEEEEEEEETTTTEEEEEEE-C-------SBSCEEEECCCTTCBCC
T ss_pred CCCCCCCCCcCCCCCCccEEEEc----------CcCccceEEECCCCCEEEEec-C-------CCCCcEEeEeccCCcCC
Confidence 320 01111111 23478899999 565554432 1 111111111111100
Q ss_pred ------------------------eeEEEEEeecCCCCCceEEEEEcC-------CCCeEEEEeCCCcEEEEEccccccc
Q 040987 542 ------------------------EFTLSTIVYEPHRDAGISAVAFHP-------NRRAAVSSSYGGDFKVWICNDELQQ 590 (762)
Q Consensus 542 ------------------------~~~~~~~~~~~h~~~~v~~~~~sp-------d~~~l~~~~~dg~i~iwd~~~~~~~ 590 (762)
........+.+ ......++|.. +|+++++.-..+.|...++..++..
T Consensus 235 wp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 235 WPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKD--SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT 312 (353)
T ss_dssp TTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESS--CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE
T ss_pred CCCccCCCCCCCCccCcccCCCCCCccCCeEEeCC--CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe
Confidence 00000011122 23566777764 4666666656677777777654322
Q ss_pred ccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 591 KDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
... .........+..+++.|||.+.++..
T Consensus 313 ~~~--------~~~~~~~~rp~~v~~~pdG~lyv~td 341 (353)
T 2g8s_A 313 EDG--------RILTDRGQRIRDVRTGPDGYLYVLTD 341 (353)
T ss_dssp EEE--------EESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred eeE--------EcccCCCCceeEEEECCCCcEEEEEe
Confidence 111 11112235788999999998766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.1 Score=51.22 Aligned_cols=250 Identities=16% Similarity=0.036 Sum_probs=127.1
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc-------CCCCCCeEEEEeCCC---CCeEEEE-e--
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL-------PRIGSPLLYFTESPD---PSLSSIS-C-- 413 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~-------~~~~~~v~~~~~s~~---~~~l~~~-~-- 413 (762)
..+...-...+.++|.|||+.+++-...|.|++++..+++...+ .........++++|+ +..|++. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 34444455678999999998777665589999998766654221 122456889999996 3444443 2
Q ss_pred cCCcEEEEEcCCce--------EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec-------------CceEEE
Q 040987 414 ADNQVHLLKMPSME--------IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE-------------NYCIHF 472 (762)
Q Consensus 414 ~d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------------dg~i~i 472 (762)
.++.|.-|....+. ....+..... .. ......++|.|||.+.++.+. .|.|.-
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~----~~--~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlR 178 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK----GV--IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILR 178 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC----CS--SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEE
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC----CC--CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEE
Confidence 34556666554311 1111111110 00 123467999999987776542 244444
Q ss_pred EEcCCCCcee-----eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce-----
Q 040987 473 YSLLDDRGIS-----EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE----- 542 (762)
Q Consensus 473 ~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~----- 542 (762)
++... +... .......+ -.....++|+|+|.+.++-.. .++.-.|.-+..+...
T Consensus 179 i~~dG-~ip~~nPf~~~~i~a~G-------~RNp~Gla~dp~G~L~~~d~g--------~~~~deln~i~~G~nyGwP~~ 242 (347)
T 3das_A 179 MTPDG-EPAPGNPFPGSPVYSYG-------HRNVQGLAWDDKQRLFASEFG--------QDTWDELNAIKPGDNYGWPEA 242 (347)
T ss_dssp ECTTS-SBCTTCSSTTCCEEEBC-------CSBCCEEEECTTCCEEEEECC--------SSSCEEEEEECTTCBCCTTTC
T ss_pred EeCCC-CccCCCCCCCCeEEeeC-------CCCcceEEECCCCCEEEEecC--------CCCCceeeEEcCCCEecCCcc
Confidence 44432 1000 00001111 123567899998876655431 2211122222222110
Q ss_pred --------eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEE
Q 040987 543 --------FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA 614 (762)
Q Consensus 543 --------~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 614 (762)
.......+.++ ......++|. +|.+++..-..+.|....+......... ..........+..+
T Consensus 243 ~g~~~~~~~~~P~~~~~~~-~~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~-------e~~l~~~~gR~~dv 313 (347)
T 3das_A 243 EGKGGGSGFHDPVAQWSTD-EASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADP-------QAFLEGEYGRLRTV 313 (347)
T ss_dssp CSSCCCTTCCCCSEEECTT-TCCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCC-------EEESTTTSSCEEEE
T ss_pred cCCCCCccccCCcEecCCC-CCCCcceEEE-cCceeeccccCCEEEEEEecCCceecce-------EEeecCCCCCccEE
Confidence 00000111122 2345667776 4555555545556666666544321110 11122334688999
Q ss_pred EEcCCCcEEEEEc
Q 040987 615 AFSADGSVLAVAA 627 (762)
Q Consensus 615 ~~s~dg~~la~~~ 627 (762)
+..|||.++++.+
T Consensus 314 ~~~pDG~lyv~td 326 (347)
T 3das_A 314 APAGGDKLWLVTS 326 (347)
T ss_dssp EEEETTEEEEEEC
T ss_pred EECCCCcEEEEEc
Confidence 9999998776654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.052 Score=54.15 Aligned_cols=249 Identities=12% Similarity=0.041 Sum_probs=122.9
Q ss_pred CCCceEEEECCCCC-EEEEEeCCeEEEEEccCchhhh-heeeeeeeccCcCeEEEEEcCC---CcEEEEee-c-------
Q 040987 235 MKEPQVITISSSGK-YFGIRKQRKLLIWKVPDVEAER-VVMRKITLHHTKKLTVLAFHPT---QRIVAAGD-V------- 301 (762)
Q Consensus 235 ~~~v~~~~~spdg~-~la~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~~~v~~~~~sp~---~~~l~~~~-~------- 301 (762)
-.....++|.|||+ ++++...+.|++++........ ................++|+|+ +.+|.... .
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 34678999999999 8877778999999854321100 0000111223456789999996 44454442 2
Q ss_pred CCeEEEEeccCCc-eeecccccccccccccccCCCCcccCCccccceee-----eccccceeEEEEecCCCEEEEEec--
Q 040987 302 TGRILIWRGFGDR-TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTW-----HWHPSEVSVLIFSSDGAYLYSGGK-- 373 (762)
Q Consensus 302 dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~s~~g~~l~s~~~-- 373 (762)
...|..++..... .+.... ..+..+ ..|. -..++|.|||.+.++.+.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~-----------------------~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~ 151 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFR-----------------------TVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENN 151 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEE-----------------------EEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTT
T ss_pred eeEEEEEEECCCCCCCCceE-----------------------EEEEECCCCCCCccc--CccEEECCCCcEEEEECCCC
Confidence 2345555554321 110000 000111 1132 356999999966555433
Q ss_pred -----------CCeEEEEecCCCce--------------eccCCCCCCeEEEEeCCCCCeEEEEecCC--cEEEEEcCCc
Q 040987 374 -----------EGVLVVWQLDTGKK--------------KFLPRIGSPLLYFTESPDPSLSSISCADN--QVHLLKMPSM 426 (762)
Q Consensus 374 -----------dg~i~~wd~~~~~~--------------~~~~~~~~~v~~~~~s~~~~~l~~~~~d~--~i~i~d~~~~ 426 (762)
.|.|.-++.+..-. +....+ .....++|.|+...|+++.... .=.|.-+..+
T Consensus 152 ~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G 230 (353)
T 2g8s_A 152 QRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKG 230 (353)
T ss_dssp CGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTT
T ss_pred CCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccC
Confidence 24677777654210 111111 2367788998433444443321 1122222221
Q ss_pred eEEE--------EEccC---------CCCCCCCC---cccCceeeEEEeC-------CCCEEEEeecCceEEEEEcCCCC
Q 040987 427 EIIR--------SISGI---------KLPCPLPE---EYKGLCRDIAFNH-------DGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 427 ~~~~--------~~~~~---------~~~~~~~~---~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
.... .+.+. ......+. .+......++|.. ++++++.....+.|...++..++
T Consensus 231 ~nyGwp~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~ 310 (353)
T 2g8s_A 231 KNYGWPLATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDK 310 (353)
T ss_dssp CBCCTTTBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTE
T ss_pred CcCCCCCccCCCCCCCCccCcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCe
Confidence 1100 00000 00000000 0113456677764 46666666677788888877543
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
....... ... ....+..+++.|||.++++.
T Consensus 311 ~~~~~~~-~~~------~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 311 VTEDGRI-LTD------RGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEEEE-SGG------GCCCEEEEEECTTSCEEEEE
T ss_pred EeeeEEc-ccC------CCCceeEEEECCCCcEEEEE
Confidence 2222111 111 03468999999999876654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.041 Score=53.61 Aligned_cols=240 Identities=8% Similarity=0.024 Sum_probs=121.0
Q ss_pred CCCeEEEEe-cC-----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEE
Q 040987 405 DPSLSSISC-AD-----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFY 473 (762)
Q Consensus 405 ~~~~l~~~~-~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~ 473 (762)
++..++.|+ .+ ..+.+||..+.+-.. +.... . ......+...+++.++.|+.+ ..+.+|
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p--~-------~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~ 83 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSIT--R-------KRRYVASVSLHDRIYVIGGYDGRSRLSSVECL 83 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCS--S-------CCBSCEEEEETTEEEEECCBCSSCBCCCEEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCC--h-------hhccccEEEECCEEEEEcCCCCCccCceEEEE
Confidence 445555555 22 368889988765332 22111 0 111112223456777777754 468999
Q ss_pred EcCCCCc--eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 474 SLLDDRG--ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 474 d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
|..+.+. -..+..... + ......+. -+++.++.++.. +......+.+||+.+.+-.. +.. .
T Consensus 84 d~~~~~~~~W~~~~~~p~---~----r~~~~~~~--~~~~lyv~GG~~----~~~~~~~~~~~d~~~~~W~~-~~~---~ 146 (301)
T 2vpj_A 84 DYTADEDGVWYSVAPMNV---R----RGLAGATT--LGDMIYVSGGFD----GSRRHTSMERYDPNIDQWSM-LGD---M 146 (301)
T ss_dssp ETTCCTTCCCEEECCCSS---C----CBSCEEEE--ETTEEEEECCBC----SSCBCCEEEEEETTTTEEEE-EEE---C
T ss_pred ECCCCCCCeeEECCCCCC---C----ccceeEEE--ECCEEEEEcccC----CCcccceEEEEcCCCCeEEE-CCC---C
Confidence 9987651 111111100 0 11111122 267777777632 11123578899987764322 111 1
Q ss_pred CCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 552 PHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
+.....-..+.+ ++++++.|+.+ ..+.+||+.+.+-. ..............+. -++++++.|
T Consensus 147 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~i~v~G 213 (301)
T 2vpj_A 147 QTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT---------NVTPMATKRSGAGVAL--LNDHIYVVG 213 (301)
T ss_dssp SSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE---------EECCCSSCCBSCEEEE--ETTEEEEEC
T ss_pred CCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE---------eCCCCCcccccceEEE--ECCEEEEEe
Confidence 110112222222 67788887754 35888888765432 2211111112222223 267777777
Q ss_pred c-C-----CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 627 A-E-----TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 627 ~-d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
+ + ..+.+||+.+.+-...-..........+..-++++++.++.++. ..+.+||+++.+
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 5 3 46899999987654332111112222222337788888876642 247889988765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.15 Score=49.00 Aligned_cols=167 Identities=8% Similarity=0.005 Sum_probs=104.2
Q ss_pred CCceEEEECCCCCEE-EEE-eCCeEEEEEccCchhhhheeeeeeecc-------CcCeEEEEE---cCCCcEEEEee---
Q 040987 236 KEPQVITISSSGKYF-GIR-KQRKLLIWKVPDVEAERVVMRKITLHH-------TKKLTVLAF---HPTQRIVAAGD--- 300 (762)
Q Consensus 236 ~~v~~~~~spdg~~l-a~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~v~~~~~---sp~~~~l~~~~--- 300 (762)
....+++|.+....+ ++. ..++|..|+...+... ...... ...+..+.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~-----~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF-----NVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE-----EECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE-----EEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 345678998755555 444 5899999998755432 111111 113578999 68888777543
Q ss_pred ----------cCCeEEEEecc---CCceeecccccccccccccccCCCCcccCCccccceeeec-cccceeEEEEecCCC
Q 040987 301 ----------VTGRILIWRGF---GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGA 366 (762)
Q Consensus 301 ----------~dg~v~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~ 366 (762)
.+..|..+|+. +++......-.... ...+...+ -......++..++|+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~------------------~~~~~~~g~~~~~~nDvavD~~Gn 149 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQ------------------DEFEKKAGKRPFGVVQSAQDRDGN 149 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHH------------------HHHHHHHSSCCEEEEEEEECTTSC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccc------------------ccccccccccccCCceeEECCCCC
Confidence 25779999987 44432210000000 00000000 112478899999999
Q ss_pred EEEEEecC-CeEEEEecCCCceecc------CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC
Q 040987 367 YLYSGGKE-GVLVVWQLDTGKKKFL------PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425 (762)
Q Consensus 367 ~l~s~~~d-g~i~~wd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~ 425 (762)
..++++.. +.|...+.+....... .........|++.|+|+.|++....+.+..+|+..
T Consensus 150 aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 99988888 8888888765433211 11122367899999999999887799999999884
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.11 Score=50.71 Aligned_cols=236 Identities=7% Similarity=-0.048 Sum_probs=119.9
Q ss_pred EEEEEec--CCeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCCC
Q 040987 367 YLYSGGK--EGVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 367 ~l~s~~~--dg~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
.++.|+. ...+.+||..+.+...+...+. ....+. .+++.++.|+.+ ..+.+||..+.+-...-. ...
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~-~p~ 90 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG-PPT 90 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC-CSS
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC-CCc
Confidence 4445554 3578999999887755433322 122222 366677777654 578899998865433211 110
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
......+..-+++.++.|+.+ ..+.+||..+.+-.. +... ..+. ..... ..-+++
T Consensus 91 ---------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~---p~~r----~~~~~--~~~~~~ 151 (306)
T 3ii7_A 91 ---------PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT-KPSM---LTQR----CSHGM--VEANGL 151 (306)
T ss_dssp ---------CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE-ECCC---SSCC----BSCEE--EEETTE
T ss_pred ---------cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe-CCCC---cCCc----ceeEE--EEECCE
Confidence 111111222367777887765 468899988764211 1111 0010 11111 123677
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEccc
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICND 586 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~ 586 (762)
.++.++.............+.+||+.+.+-.. +.. .+.....-..+.+ ++++++.|+.+ ..+.+||+.+
T Consensus 152 iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~---~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~ 225 (306)
T 3ii7_A 152 IYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-LCP---MIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL 225 (306)
T ss_dssp EEEECCEESCTTTCEECCCEEEEETTTTEEEE-ECC---CSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred EEEECCCCCCCCcccccceEEEeCCCCCeEEE-CCC---ccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence 77777632110000004568889988764221 111 1110111122222 66777777653 3588888876
Q ss_pred ccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-----CeEEEEeCCCCeE
Q 040987 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-----TVITLWDPDRNVL 641 (762)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-----~~i~iwd~~~~~~ 641 (762)
.+-. ..............+.+ ++++++.|+ + ..+.+||..+.+-
T Consensus 226 ~~W~---------~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 226 NEWK---------MVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKW 275 (306)
T ss_dssp TEEE---------ECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEE
T ss_pred CcEE---------ECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeE
Confidence 5432 22112222222233333 777877776 3 5789999988743
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.29 Score=50.29 Aligned_cols=299 Identities=9% Similarity=0.005 Sum_probs=164.1
Q ss_pred EEEEecCCeEEEEecCCCceeccCC-C-------------------------CCCe--EEEEeC---CCCCeEEEEec-C
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPR-I-------------------------GSPL--LYFTES---PDPSLSSISCA-D 415 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~-~-------------------------~~~v--~~~~~s---~~~~~l~~~~~-d 415 (762)
+.||+..|+|+++-+-+++...... . .+.. ..+++. .||++|++-.. +
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5677788888888877766522110 0 0111 122331 36788887764 5
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe--CCCCEEEEeecC-------ceE------------EEEE
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN--HDGGLVALRAEN-------YCI------------HFYS 474 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~d-------g~i------------~i~d 474 (762)
..|-..+++..++-+.+.-... ..+..+.|- |+..+++.+++. |.. ...|
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn~---------~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPNV---------QAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTTC---------SCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred cceEEEECCcEeeceeEeCCCC---------cCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 5788889998888777654332 466777776 677788777642 221 0111
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecccc------CCCcee-------------------
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEE------GIGSLV------------------- 529 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~------~~~~d~------------------- 529 (762)
..+.+....+.. ..........++|++.++.+.+.... ......
T Consensus 224 ~~tm~v~~Qv~v-----------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~ 292 (638)
T 3sbq_A 224 AETMEMAFQVIV-----------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDF 292 (638)
T ss_dssp TTTCSEEEEEEE-----------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCC
T ss_pred CCccEEEEEEEc-----------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCe
Confidence 111111111111 11122345577788887776431000 000111
Q ss_pred ------EEEEEEecC----CCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccC-Cc
Q 040987 530 ------CLKFWVSGT----QNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQS-SG 597 (762)
Q Consensus 530 ------~i~iwd~~~----~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~ 597 (762)
.+.+.|.+. +.....+-.. ......+.++|||++++.++ .+.++.++|+..-.....-.. ..
T Consensus 293 ~~~~g~gv~ViD~~~~~~~~~~~~~~iP~------pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~ 366 (638)
T 3sbq_A 293 ITLGDSKTPVLDGRKKDGKDSKFTRYVPV------PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADP 366 (638)
T ss_dssp BCCTTCCCCEEECSCBTTBCCSSEEEEEE------SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCG
T ss_pred EEECCCCeeEEccccccccCCceEEEEeC------CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCc
Confidence 355555554 2221111111 23344688999999988776 467899999975322110000 00
Q ss_pred eeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC----------eEEEEeccccCceeEEEE------eCC
Q 040987 598 WSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN----------VLVAVIGETLTPIMNMSF------VGS 660 (762)
Q Consensus 598 ~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~----------~~~~~l~~~~~~v~~~~~------s~d 660 (762)
-.+......-.......+|.++|....+-. |..|..|++... ..+..+..|-.+ -.+.- .||
T Consensus 367 ~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~d 445 (638)
T 3sbq_A 367 RDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEAD 445 (638)
T ss_dssp GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCC
T ss_pred ccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCC
Confidence 000000111345677899999994444445 999999998753 456666666543 33433 579
Q ss_pred CCEEEEEE---cCCC--------CeEEEEECCCCceeeEEEEee
Q 040987 661 SEYLVATS---WGSK--------PQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 661 g~~l~s~~---~d~~--------~~v~vwd~~~~~~~~~~~~~~ 693 (762)
|++|++.. .|.- -.-.+.|+...++...+..+.
T Consensus 446 Gk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~D~P~ 489 (638)
T 3sbq_A 446 GKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVHDGPT 489 (638)
T ss_dssp SCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEEEEEE
T ss_pred ccEEEEecccccccCcCCCCCCCCcceeEecCCCceEEEecCCC
Confidence 99999985 3432 124788887777666555554
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.089 Score=51.30 Aligned_cols=237 Identities=10% Similarity=0.009 Sum_probs=119.3
Q ss_pred CCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----ceEEEEEcCCCC
Q 040987 406 PSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN----YCIHFYSLLDDR 479 (762)
Q Consensus 406 ~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~i~d~~~~~ 479 (762)
+.+++.|+. ...+.+||..+.+-... .... . ......+..-+++.++.|+.+ ..+.+||..+.+
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~-~~~p--~-------~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~ 81 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDI-RCPF--E-------KRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDS 81 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEEC-CCCS--C-------CCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTE
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecC-CCCC--c-------ccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCe
Confidence 344555554 35789999987654322 1111 0 111112222366777787754 678899988764
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGIS 559 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~ 559 (762)
-.. +..... + ......+ .-+++.++.|+.+. +......+.+||..+.+-.. +.. .+.....-.
T Consensus 82 W~~-~~~~p~---~----r~~~~~~--~~~~~iyv~GG~~~---~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~~ 144 (306)
T 3ii7_A 82 WYS-KLGPPT---P----RDSLAAC--AAEGKIYTSGGSEV---GNSALYLFECYDTRTESWHT-KPS---MLTQRCSHG 144 (306)
T ss_dssp EEE-EECCSS---C----CBSCEEE--EETTEEEEECCBBT---TBSCCCCEEEEETTTTEEEE-ECC---CSSCCBSCE
T ss_pred EEE-CCCCCc---c----ccceeEE--EECCEEEEECCCCC---CCcEeeeEEEEeCCCCceEe-CCC---CcCCcceeE
Confidence 221 111110 0 1111111 22677777776320 11123568889988764322 111 111011112
Q ss_pred EEEEcCCCCeEEEEeC---------CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-
Q 040987 560 AVAFHPNRRAAVSSSY---------GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E- 628 (762)
Q Consensus 560 ~~~~spd~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d- 628 (762)
.+.+ ++++++.|+. -..+.+||..+..- ............-..+.+ ++++++.|+ +
T Consensus 145 ~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W---------~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 211 (306)
T 3ii7_A 145 MVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW---------TELCPMIEARKNHGLVFV--KDKIFAVGGQNG 211 (306)
T ss_dssp EEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEE---------EEECCCSSCCBSCEEEEE--TTEEEEECCEET
T ss_pred EEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeE---------EECCCccchhhcceEEEE--CCEEEEEeCCCC
Confidence 2222 6677777763 34588888876533 222211111122222222 677777775 2
Q ss_pred ----CeEEEEeCCCCeEEEE--eccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 629 ----TVITLWDPDRNVLVAV--IGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 629 ----~~i~iwd~~~~~~~~~--l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
..+.+||..+.+-... +.........+.+ ++++++.++.++. ..+.+||..+.+
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 4689999998754332 2222222222223 7788888886532 348889988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.088 Score=60.60 Aligned_cols=233 Identities=12% Similarity=0.175 Sum_probs=138.5
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
....|.|.|+..+..+......- -+.-.+|..+.||.-....+.|||+.+.... +.. ....+|.-=.|-.
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~A----dsAIMnP~~~iiALrag~~lQiFnl~~k~kl-----ks~-~~~e~VvfWkWis 115 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISA----DSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAH-TMTDDVTFWKWIS 115 (1630)
T ss_pred CCceEEEEECCCCCCcccccccc----hhhccCCCcceEEEecCCeEEEeehHHhhhh-----ccc-ccCCCceEEEecC
Confidence 34488999998877652222222 2345678889998777899999999988754 222 1234566666664
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc----ccceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH----PSEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~s~~g~~ 367 (762)
+.. |+..+ +..|.-|++.+.. .+.+.+..| ...|..-..+++.++
T Consensus 116 ~~~-l~lVT-~~aVyHW~~~~~s-----------------------------~P~k~fdR~~~L~~~QIinY~~d~~~kW 164 (1630)
T 1xi4_A 116 LNT-VALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 164 (1630)
T ss_pred CCe-eEEEc-CCeEEEeccCCCC-----------------------------ccHHHHhcchhcccCeeEEeeeCCCCCe
Confidence 443 44332 4579999996532 223333333 345666677888888
Q ss_pred EEEEe-------cCCeEEEEecCCCceeccCCCCCCeEEEEeC--CC-CCeEEEEec---CCcEEEEEcCCc-eEEEEEc
Q 040987 368 LYSGG-------KEGVLVVWQLDTGKKKFLPRIGSPLLYFTES--PD-PSLSSISCA---DNQVHLLKMPSM-EIIRSIS 433 (762)
Q Consensus 368 l~s~~-------~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s--~~-~~~l~~~~~---d~~i~i~d~~~~-~~~~~~~ 433 (762)
++..| -.|.+.+|..+.+..+.+.+|......+... +. ...+..+.. .+.++|.++... .-...+.
T Consensus 165 ~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~ 244 (1630)
T 1xi4_A 165 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 244 (1630)
T ss_pred EEEEeeccCCCcccceeeeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCc
Confidence 77544 2478999999887766666655443333331 11 122222221 267888887542 1001111
Q ss_pred cCCCCCC-CCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEE
Q 040987 434 GIKLPCP-LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485 (762)
Q Consensus 434 ~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 485 (762)
.....+. .++.......++..++.-..+...+.-|.+.+||+.++..+..-.
T Consensus 245 kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 245 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred cccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 1111111 111223445678888877788888999999999999998776544
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.05 Score=54.00 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=97.1
Q ss_pred EEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeec-ccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 453 AFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCE-RNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 453 ~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
....+|..++++ .++.||.-++.....-+.+.... .. -..+..+..+|+|++||..+ +..|
T Consensus 27 ~~~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~-------f~~i~qlvlSpsG~lLAl~g----------~~~V 88 (452)
T 3pbp_A 27 FSSQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLV-------LDDTFHVISSTSGDLLCLFN----------DNEI 88 (452)
T ss_dssp EEETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCC-------CCTTCEEEECTTSSEEEEEC----------SSEE
T ss_pred EEEcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccc-------cCceeEEEECCCCCEEEEec----------CCeE
Confidence 344566666655 45778888887554333333221 00 12467799999999999984 5688
Q ss_pred EEEEecCCCc-e--------eEEEEEeecCC---CCCceEEEEEcCC---CCeEEEEeCCCcEEEEEccccccccc-ccC
Q 040987 532 KFWVSGTQNK-E--------FTLSTIVYEPH---RDAGISAVAFHPN---RRAAVSSSYGGDFKVWICNDELQQKD-LQS 595 (762)
Q Consensus 532 ~iwd~~~~~~-~--------~~~~~~~~~~h---~~~~v~~~~~spd---~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~ 595 (762)
.|-.+..+.. . .........+- ....|..+.|+|- +..|++-..|+.|++||+........ +..
T Consensus 89 ~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k 168 (452)
T 3pbp_A 89 FVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNK 168 (452)
T ss_dssp EEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESC
T ss_pred EEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhc
Confidence 8888773321 0 01111111110 1467999999995 55899999999999999986322111 110
Q ss_pred CceeeeeecccCCCCeEEEEEcCCCcEEEE--Ec-CCeEEEE
Q 040987 596 SGWSCHAVGSYKKKAMTAAAFSADGSVLAV--AA-ETVITLW 634 (762)
Q Consensus 596 ~~~~~~~~~~~~~~~i~~~~~s~dg~~la~--~~-d~~i~iw 634 (762)
... ..........|.+++|+++|-.|.+ .+ +|.|+-.
T Consensus 169 -~~~-~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 169 -PNN-SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp -CCS-EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred -ccc-ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 000 0112234478899999998765555 44 6777643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.11 Score=50.39 Aligned_cols=228 Identities=11% Similarity=0.081 Sum_probs=111.3
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCCceeeEEeeccc
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDRGISEVQVCERN 490 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~ 490 (762)
..+..||..+.+-.. +.....+ . .. .+++ .-+++.++.|+.+ ..+.+||..+.+-.. +....
T Consensus 30 ~~~~~~d~~~~~W~~-~~~~p~~----r---~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p-- 96 (302)
T 2xn4_A 30 RSVECYDFKEERWHQ-VAELPSR----R---CR-AGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMR-- 96 (302)
T ss_dssp CCEEEEETTTTEEEE-ECCCSSC----C---BS-CEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCS--
T ss_pred CcEEEEcCcCCcEeE-cccCCcc----c---cc-ceEE-EECCEEEEEeCcCCCccccceEEECCCCCceee-CCCCC--
Confidence 357888888765332 2211100 0 11 1222 2367777777754 358889987653211 11110
Q ss_pred ccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeE
Q 040987 491 HQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAA 570 (762)
Q Consensus 491 ~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l 570 (762)
.+ ......+ .-+++.++.|+.. +......+.+||+.+.+-.. +.. .+.....-..+.+ +++++
T Consensus 97 -~~----r~~~~~~--~~~~~iyv~GG~~----~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~~~~~~--~~~iy 159 (302)
T 2xn4_A 97 -DR----RSTLGAA--VLNGLLYAVGGFD----GSTGLSSVEAYNIKSNEWFH-VAP---MNTRRSSVGVGVV--GGLLY 159 (302)
T ss_dssp -SC----CBSCEEE--EETTEEEEEEEEC----SSCEEEEEEEEETTTTEEEE-ECC---CSSCCBSCEEEEE--TTEEE
T ss_pred -cc----ccceEEE--EECCEEEEEcCCC----CCccCceEEEEeCCCCeEee-cCC---CCCcccCceEEEE--CCEEE
Confidence 00 1111111 2267777777632 11123568888887654322 111 1110112222222 56777
Q ss_pred EEEeCC-------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-C-----CeEEEEeCC
Q 040987 571 VSSSYG-------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-E-----TVITLWDPD 637 (762)
Q Consensus 571 ~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d-----~~i~iwd~~ 637 (762)
+.|+.+ ..+.+||+.+.+-. ..............+. -++++++.|+ + ..+.+||..
T Consensus 160 v~GG~~~~~~~~~~~~~~yd~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~ 228 (302)
T 2xn4_A 160 AVGGYDVASRQCLSTVECYNATTNEWT---------YIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPT 228 (302)
T ss_dssp EECCEETTTTEECCCEEEEETTTTEEE---------EECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETT
T ss_pred EEeCCCCCCCccccEEEEEeCCCCcEE---------ECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCC
Confidence 777643 35888888765332 2211111122222222 2677878775 3 469999999
Q ss_pred CCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 638 RNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 638 ~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
+.+-...-.........-+..-++++++.++.++. ..+.+||+++.+
T Consensus 229 ~~~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 229 TNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCEeeCCCCCCccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 87544322111111111222336788888876542 238888887753
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.49 Score=48.79 Aligned_cols=107 Identities=14% Similarity=0.184 Sum_probs=62.5
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec---cCC------CCCCeEEEEeCCC---CCeEEEEec------
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF---LPR------IGSPLLYFTESPD---PSLSSISCA------ 414 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~---~~~------~~~~v~~~~~s~~---~~~l~~~~~------ 414 (762)
-...+.|+|.|+|+.+++-...+.|++++..+++... +.. ....+..++++|+ +..|+++..
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877765444579888866555421 111 2456789999996 555555432
Q ss_pred -------CCcEEEEEcCCc--eE---EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee
Q 040987 415 -------DNQVHLLKMPSM--EI---IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA 465 (762)
Q Consensus 415 -------d~~i~i~d~~~~--~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 465 (762)
...|..++.... .. ...+..... ........++|.|||.+.++.+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~------~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPS------SKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECC------CSSCCEEEEEECTTSCEEEEEC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCC------CCCCCCCeEeECCCCeEEEEEC
Confidence 234555655321 11 111211110 0013468899999998777654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.053 Score=53.83 Aligned_cols=149 Identities=14% Similarity=0.222 Sum_probs=92.7
Q ss_pred ccccEEEEecCCccccceeeec---cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhh--------hheeeeeeec-
Q 040987 212 MNGRICKCNLTESRLAGGVTLA---EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAE--------RVVMRKITLH- 279 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~--------~~~~~~~~~~- 279 (762)
.++.||.-++..+..-+..... ....+..+..+|+|++||..++..|.|-.++.+... ..+.+....+
T Consensus 39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~ 118 (452)
T 3pbp_A 39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE 118 (452)
T ss_dssp ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence 4567777777754422222222 133688999999999999999999999999843211 1122222222
Q ss_pred ----cCcCeEEEEEcCC---CcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 280 ----HTKKLTVLAFHPT---QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 280 ----~~~~v~~~~~sp~---~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
...+|..+.|+|- +..|++-..|+.|++||+........ ... .......+...
T Consensus 119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~---~L~-----------------k~~~~fg~d~~ 178 (452)
T 3pbp_A 119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI---VLN-----------------KPNNSFGLDAR 178 (452)
T ss_dssp CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE---EES-----------------CCCSEEESCSS
T ss_pred cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc---chh-----------------ccccccCCCcc
Confidence 2567999999994 45888888999999999975221100 000 00000122233
Q ss_pred ccceeEEEEecCCCEEEEEe--cCCeEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGG--KEGVLVVW 380 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~--~dg~i~~w 380 (762)
...|.+++|.+++=.|+... +.|.|+-.
T Consensus 179 ~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 179 VNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 46788999998876666644 66777654
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.15 Score=49.69 Aligned_cols=240 Identities=8% Similarity=0.047 Sum_probs=118.0
Q ss_pred CCCCeEEEEec----CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----C-----ceE
Q 040987 404 PDPSLSSISCA----DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----N-----YCI 470 (762)
Q Consensus 404 ~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-----g~i 470 (762)
-++..++.|+. -..+.+||..+.+-... .....+ . .. .+++ .-+++.++.|+. + ..+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~----r---~~-~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~ 92 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVP----R---SG-LAGC-VVGGLLYAVGGRNNSPDGNTDSSAL 92 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSC----C---BS-CEEE-EETTEEEEECCEEEETTEEEECCCE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcc----c---cc-ceEE-EECCEEEEECCCcCCCCCCeecceE
Confidence 34555555553 24688899887654332 111100 0 11 1222 236677777775 2 358
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEee
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVY 550 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 550 (762)
.+||..+.+-.. +.... .+ ......+. -+++.++.|+.... .....+.+||..+.+-... ..
T Consensus 93 ~~~d~~~~~W~~-~~~~p---~~----r~~~~~~~--~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~~~-~~--- 154 (308)
T 1zgk_A 93 DCYNPMTNQWSP-CAPMS---VP----RNRIGVGV--IDGHIYAVGGSHGC----IHHNSVERYEPERDEWHLV-AP--- 154 (308)
T ss_dssp EEEETTTTEEEE-CCCCS---SC----CBTCEEEE--ETTEEEEECCEETT----EECCCEEEEETTTTEEEEC-CC---
T ss_pred EEECCCCCeEeE-CCCCC---cC----ccccEEEE--ECCEEEEEcCCCCC----cccccEEEECCCCCeEeEC-CC---
Confidence 889987653211 11000 00 11111122 26777777763210 0124688888876542211 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEEEeCC-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEE
Q 040987 551 EPHRDAGISAVAFHPNRRAAVSSSYG-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV 625 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~ 625 (762)
.+.....-..+.+ ++++++.|+.+ ..+.+||+.+.+-... ............+.+ ++++++.
T Consensus 155 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---------~~~p~~r~~~~~~~~--~~~iyv~ 221 (308)
T 1zgk_A 155 MLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI---------TAMNTIRSGAGVCVL--HNCIYAA 221 (308)
T ss_dssp CSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC---------CCCSSCCBSCEEEEE--TTEEEEE
T ss_pred CCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC---------CCCCCccccceEEEE--CCEEEEE
Confidence 1110112222333 67777777754 4588888876543222 111111222223333 6777777
Q ss_pred Ec-C-----CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 626 AA-E-----TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 626 ~~-d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
|+ + ..+.+||+.+.+-...-..........+..-++++++.++.++. ..+.+||+++.+
T Consensus 222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 75 3 56999999987654322111111111122236788888876542 247888887754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.13 Score=50.05 Aligned_cols=217 Identities=11% Similarity=0.027 Sum_probs=110.1
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCch---hhhheeeeeeeccCcCe
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVE---AERVVMRKITLHHTKKL 284 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~---~~~~~~~~~~~~~~~~v 284 (762)
..+.+||+.+++-...........-.+++ .-++++++.| .+ ..+.+||..+.+ .. .... ........
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~--~~~~-~p~~r~~~ 106 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASV-SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWY--SVAP-MNVRRGLA 106 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCE--EECC-CSSCCBSC
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEE-EECCEEEEEcCCCCCccCceEEEEECCCCCCCeeE--ECCC-CCCCccce
Confidence 47888888877644211111111112222 2355555544 22 568999988876 32 1111 11111122
Q ss_pred EEEEEcCCCcEEEEeecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEE
Q 040987 285 TVLAFHPTQRIVAAGDVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVL 359 (762)
Q Consensus 285 ~~~~~sp~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 359 (762)
..+.+ +++.++.|+.+ ..+.+||..+.+-.. +..+...... .++
T Consensus 107 ~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~----------------------------~~~~p~~r~~-~~~ 155 (301)
T 2vpj_A 107 GATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM----------------------------LGDMQTAREG-AGL 155 (301)
T ss_dssp EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE----------------------------EEECSSCCBS-CEE
T ss_pred eEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE----------------------------CCCCCCCccc-ceE
Confidence 22222 67777777654 357888876654322 0111100111 112
Q ss_pred EEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecC-----CcEEEEEcCCc
Q 040987 360 IFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCAD-----NQVHLLKMPSM 426 (762)
Q Consensus 360 ~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~ 426 (762)
+. .+++.++.|+.+ ..+.+||..+.+...+.....+ ...+.+ +++.++.|+.+ ..+.+||+.+.
T Consensus 156 ~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 156 VV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp EE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 22 266777777654 4588999988877544333221 222222 56777777653 46899999876
Q ss_pred eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 427 EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
+-... ..... ......+..-+++.++.|+.+ ..+.+||+.+.
T Consensus 233 ~W~~~-~~~p~---------~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 233 SWTTV-TSMTT---------PRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEEE-CCCSS---------CCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cEEEC-CCCCC---------cccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 54332 21110 111111222367777777755 46788888765
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.27 Score=48.05 Aligned_cols=232 Identities=8% Similarity=-0.055 Sum_probs=112.5
Q ss_pred CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----C-------ceEEEEEcCCCCceeeE
Q 040987 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----N-------YCIHFYSLLDDRGISEV 484 (762)
Q Consensus 416 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----d-------g~i~i~d~~~~~~~~~~ 484 (762)
..+..||..+.+-.. .....+. ......+...+++.++.|+. + ..+..||..+.+-. .+
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~-~~ 82 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQV-------PKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL-GM 82 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCS-------CSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE-EC
T ss_pred CceEEECCCCCeEec--CCCCCCC-------CccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE-EC
Confidence 679999999876432 1111010 11222333457778888874 1 23778888765421 11
Q ss_pred EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc
Q 040987 485 QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH 564 (762)
Q Consensus 485 ~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s 564 (762)
.... .......+..-+++.++.|+..... +......+.+||..+.+-.. +.. .+.....- +++.
T Consensus 83 ~~~p---------~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~d~~~~~W~~-~~~---~p~~r~~~-~~~~- 146 (315)
T 4asc_A 83 PPLP---------SPRCLFGLGEALNSIYVVGGREIKD-GERCLDSVMCYDRLSFKWGE-SDP---LPYVVYGH-TVLS- 146 (315)
T ss_dssp CCBS---------SCEESCEEEEETTEEEEECCEESST-TCCBCCCEEEEETTTTEEEE-CCC---CSSCCBSC-EEEE-
T ss_pred CCCC---------cchhceeEEEECCEEEEEeCCcCCC-CCcccceEEEECCCCCcEeE-CCC---CCCcccce-eEEE-
Confidence 1100 0011111112266777777642111 11133568889988764221 111 11101111 2222
Q ss_pred CCCCeEEEEeC-C-----CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC-----eEE
Q 040987 565 PNRRAAVSSSY-G-----GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET-----VIT 632 (762)
Q Consensus 565 pd~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~-----~i~ 632 (762)
-++++++.|+. + ..+.+||..+.+-. ...........-..+. -++++++.|+ ++ .+.
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK---------ELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEE---------ECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEE---------ECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 36677778776 2 36888988765332 2211111112222222 2677877776 32 688
Q ss_pred EEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCC------C------CeEEEEECCCCc
Q 040987 633 LWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGS------K------PQLSVWNMSKLS 684 (762)
Q Consensus 633 iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~------~------~~v~vwd~~~~~ 684 (762)
+||..+.+-...-..........+..-++++++.++.++ . ..+.+||+++.+
T Consensus 216 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 216 VYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCCCeEEECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 999998754433221111111122223678888887642 0 126677776653
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.27 Score=48.10 Aligned_cols=179 Identities=9% Similarity=0.037 Sum_probs=93.4
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-----C-------CeEEEEEccCchhhhheeeeeeeccC
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-----Q-------RKLLIWKVPDVEAERVVMRKITLHHT 281 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-----~-------~~i~iwd~~~~~~~~~~~~~~~~~~~ 281 (762)
..+.+||..+++-...............+...++++++.|. + ..+.+||..+.+-. ...... ...
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~p-~~r 89 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GMPPLP-SPR 89 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--ECCCBS-SCE
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--ECCCCC-cch
Confidence 57889999888754211111223344444556777776443 1 23778888876542 111111 111
Q ss_pred cCeEEEEEcCCCcEEEEeecC--------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 282 KKLTVLAFHPTQRIVAAGDVT--------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 282 ~~v~~~~~sp~~~~l~~~~~d--------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
..-..+.+ +++.++.|+.+ ..+.+||..+++-... ..+....
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~----------------------------~~~p~~r 139 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGES----------------------------DPLPYVV 139 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEEC----------------------------CCCSSCC
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeEC----------------------------CCCCCcc
Confidence 11112222 66777777643 3588888866542210 1111111
Q ss_pred cceeEEEEecCCCEEEEEec-C-----CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecCC-----cEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK-E-----GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCADN-----QVH 419 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~-d-----g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d~-----~i~ 419 (762)
.. .+++ ..+++.++.|+. + ..+.+||..+.+.......+.+ ...+. -+++.++.|+.++ .+.
T Consensus 140 ~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~ 215 (315)
T 4asc_A 140 YG-HTVL-SHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV--HDGRIIVAAGVTDTGLTSSAE 215 (315)
T ss_dssp BS-CEEE-EETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEEEEECSSSEEEEEE
T ss_pred cc-eeEE-EECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE--ECCEEEEEeccCCCCccceEE
Confidence 11 1122 236667777765 2 4689999998877554433221 12222 2667777777654 588
Q ss_pred EEEcCCceEE
Q 040987 420 LLKMPSMEII 429 (762)
Q Consensus 420 i~d~~~~~~~ 429 (762)
+||..+.+-.
T Consensus 216 ~yd~~~~~W~ 225 (315)
T 4asc_A 216 VYSITDNKWA 225 (315)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 8999876443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.18 Score=58.20 Aligned_cols=280 Identities=8% Similarity=0.048 Sum_probs=152.4
Q ss_pred CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEE
Q 040987 374 EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIA 453 (762)
Q Consensus 374 dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 453 (762)
..+|.+.|+..+...... +-..-+.-.+|..+.++.- ....+.|+|+.+...++.+.-.. .|.--.
T Consensus 47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALr-ag~~lQiFnl~~k~klks~~~~e-----------~VvfWk 112 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALK-AGKTLQIFNIEMKSKMKAHTMTD-----------DVTFWK 112 (1630)
T ss_pred CceEEEEECCCCCCcccc--cccchhhccCCCcceEEEe-cCCeEEEeehHHhhhhcccccCC-----------CceEEE
Confidence 347899999886653221 1222345567888777766 47799999999876666554322 333334
Q ss_pred EeCCCCEEEEeecCceEEEEEcCCCCceee-EEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEE
Q 040987 454 FNHDGGLVALRAENYCIHFYSLLDDRGISE-VQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532 (762)
Q Consensus 454 ~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~ 532 (762)
|-.+ +.|+..+. ..|+-|++.....+.. +... .... ...|.....+++.++++..+...... .-.|.+.
T Consensus 113 Wis~-~~l~lVT~-~aVyHW~~~~~s~P~k~fdR~----~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~--~v~G~mQ 182 (1630)
T 1xi4_A 113 WISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRH----SSLA--GCQIINYRTDAKQKWLLLTGISAQQN--RVVGAMQ 182 (1630)
T ss_pred ecCC-CeeEEEcC-CeEEEeccCCCCccHHHHhcc----hhcc--cCeeEEeeeCCCCCeEEEEeeccCCC--cccceee
Confidence 4433 34544443 4599999965332211 1111 0010 45688888999999998877432222 2468899
Q ss_pred EEEecCCCceeEEEEEeecCCCCCceEEEEEc---CCCCeEEEEeC---CCcEEEEEcccc-cccccccCCceeeeeecc
Q 040987 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH---PNRRAAVSSSY---GGDFKVWICNDE-LQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 533 iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s---pd~~~l~~~~~---dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~ 605 (762)
+|..+..... ...|| .+....+... +....++.+.. .+.+.|.++... .....+............
T Consensus 183 LyS~er~~sQ------~iegh-a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~ 255 (1630)
T 1xi4_A 183 LYSVDRKVSQ------PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPE 255 (1630)
T ss_pred eeecccccch------hhhHh-HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcc
Confidence 9988765321 12455 3333332221 11223333332 267889888553 111111100000111111
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
...+-..++..|+.-..+..-+ -|.|++||+.+|.++..-+-...+|.-.+-.....-++.....|. |.--.++...
T Consensus 256 ~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~--vl~v~v~~~~ 333 (1630)
T 1xi4_A 256 AQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ--VLSVCVEEEN 333 (1630)
T ss_pred cccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCce--EEEEEEccch
Confidence 2234445777888777777777 899999999999887655544444544443333233333334443 5555554444
Q ss_pred ee
Q 040987 685 IS 686 (762)
Q Consensus 685 ~~ 686 (762)
++
T Consensus 334 iv 335 (1630)
T 1xi4_A 334 II 335 (1630)
T ss_pred hh
Confidence 33
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.29 Score=47.60 Aligned_cols=218 Identities=11% Similarity=0.071 Sum_probs=109.1
Q ss_pred cccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-e----C-----CeEEEEEccCchhhhheeeeeeeccCc
Q 040987 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-K----Q-----RKLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 213 d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~----~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
-..+.+||..+++-...........-.+++. -++++++.| . + ..+.+||..+.+.. ..... .....
T Consensus 38 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~-p~~r~ 113 (308)
T 1zgk_A 38 LSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS--PCAPM-SVPRN 113 (308)
T ss_dssp CCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE--ECCCC-SSCCB
T ss_pred cceEEEEcCCCCeEeECCCCCcccccceEEE-ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe--ECCCC-CcCcc
Confidence 3468888888776542111111111122222 255555543 2 1 46888998876643 11111 11111
Q ss_pred CeEEEEEcCCCcEEEEeecC-----CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 283 KLTVLAFHPTQRIVAAGDVT-----GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
....+.+ +++.++.|+.+ ..+.+||..+.+-... ..+......-.
T Consensus 114 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----------------------------~~~p~~r~~~~ 163 (308)
T 1zgk_A 114 RIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV----------------------------APMLTRRIGVG 163 (308)
T ss_dssp TCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC----------------------------CCCSSCCBSCE
T ss_pred ccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC----------------------------CCCCccccceE
Confidence 2222223 67777777644 3577888766543221 01110111111
Q ss_pred EEEEecCCCEEEEEecC-----CeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC-----CcEEEEEcC
Q 040987 358 VLIFSSDGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD-----NQVHLLKMP 424 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~ 424 (762)
.+.+ +++.++.|+.+ ..+.+||..+.+......... ....+.+ +++.++.|+.+ ..+.+||+.
T Consensus 164 ~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 239 (308)
T 1zgk_A 164 VAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVE 239 (308)
T ss_dssp EEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETT
T ss_pred EEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCC
Confidence 2222 66677777654 458999998887654433222 1222333 66777777654 568999998
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCC
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDD 478 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~ 478 (762)
+.+-.. +.....+ ..-.+++. -+++.++.|+.+ ..+.+||+.+.
T Consensus 240 ~~~W~~-~~~~p~~--------r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 240 TETWTF-VAPMKHR--------RSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TTEEEE-CCCCSSC--------CBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCcEEE-CCCCCCC--------ccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 765432 2211100 01112222 366777777644 45778888765
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.12 Score=50.40 Aligned_cols=207 Identities=10% Similarity=0.006 Sum_probs=102.9
Q ss_pred CeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeE---EEeCCCCEEEEe-ecCceEEEEEcCCCCcee
Q 040987 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI---AFNHDGGLVALR-AENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 407 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 482 (762)
..+++++.||.|+-+|..+|+....+..... ..+... ....++..++.. +.||.|+.++..++....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~---------~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENF---------QPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGS---------CCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCcc---------CCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 4678889999999999999999999876410 000000 000133334343 689999999988774433
Q ss_pred eEEeecccccCCCCcceeEEE---EEE-e----cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCC
Q 040987 483 EVQVCERNHQPGDDVTVVVTL---VAL-S----QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHR 554 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~---~~~-s----p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~ 554 (762)
.+....... ..++.. ... . ..+..+.+++ .++.+...|+.+++.++.+......++.
T Consensus 82 ~~~~~~lv~------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs---------~~g~l~ald~~tG~~~W~~~~~~~~~~~ 146 (339)
T 2be1_A 82 PLSIRQLVS------TSPLHLKTNIVVNDSGKIVEDEKVYTGS---------MRTIMYTINMLNGEIISAFGPGSKNGYF 146 (339)
T ss_dssp EEEHHHHHT------TCSEEEECC----------CCEEEEECE---------EEEEEEEEETTTCCEEEEESTTCBCC--
T ss_pred eecccccee------ccccccCCCceeecccccccCCEEEEEe---------cCCEEEEEECCCCcEEEEEecCCCcccc
Confidence 322211000 111110 000 0 1455677777 7899999999999998887431000000
Q ss_pred C-CceEEEEEc-----CCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCe-EEEEEcCCCcEEEEEc
Q 040987 555 D-AGISAVAFH-----PNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAM-TAAAFSADGSVLAVAA 627 (762)
Q Consensus 555 ~-~~v~~~~~s-----pd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~dg~~la~~~ 627 (762)
. ....|.... -.+..++.+..+..+.+.+ ++++ .-...-..|... .....+ ..-..+.|+.++++..
T Consensus 147 ~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~----~~~~~~~~~~~~s~Dg~~~~~~~ 220 (339)
T 2be1_A 147 GSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQN----VLDVPLALQNTFSKDGMCIAPFR 220 (339)
T ss_dssp ------------------CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECC----TTTHHHHTTCSSCSSSCCEEEET
T ss_pred cccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eEEEeccccccc----ccccccccccccccCCcEEEECC
Confidence 0 000111110 1234566666666666655 3332 111100000000 000000 0001124577765445
Q ss_pred CCeEEEEeCCCCeEEE
Q 040987 628 ETVITLWDPDRNVLVA 643 (762)
Q Consensus 628 d~~i~iwd~~~~~~~~ 643 (762)
||.|.-+|..+|+.+-
T Consensus 221 dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 221 DKSLLASDLDFRIARW 236 (339)
T ss_dssp TTEEEEECSTTCCEEE
T ss_pred CCEEEEEECCCCcEEE
Confidence 8888888888887664
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.24 Score=48.00 Aligned_cols=217 Identities=11% Similarity=0.114 Sum_probs=107.7
Q ss_pred ccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC-----CeEEEEEccCchhhhheeeeeeeccCcCeEEE
Q 040987 214 GRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ-----RKLLIWKVPDVEAERVVMRKITLHHTKKLTVL 287 (762)
Q Consensus 214 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~ 287 (762)
..+..||+.+.+-...........-.+++. -++++++.| .+ ..+.+||..+.+.. .... .......-..+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~--~~~~-~p~~r~~~~~~ 105 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-MAGLVFAVGGFNGSLRVRTVDSYDPVKDQWT--SVAN-MRDRRSTLGAA 105 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEESCBCSSSBCCCEEEEETTTTEEE--EECC-CSSCCBSCEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-ECCEEEEEeCcCCCccccceEEECCCCCcee--eCCC-CCccccceEEE
Confidence 457888887765431111111111112222 255555544 22 46888998876643 1111 11111112222
Q ss_pred EEcCCCcEEEEeecCC-----eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 288 AFHPTQRIVAAGDVTG-----RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+ +++.++.|+.++ .+.+||..+.+-... ..+...... .+++.
T Consensus 106 ~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~----------------------------~~~p~~r~~-~~~~~- 153 (302)
T 2xn4_A 106 VL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHV----------------------------APMNTRRSS-VGVGV- 153 (302)
T ss_dssp EE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEE----------------------------CCCSSCCBS-CEEEE-
T ss_pred EE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeec----------------------------CCCCCcccC-ceEEE-
Confidence 22 677777777553 577788766543221 011101111 11222
Q ss_pred cCCCEEEEEecC-------CeEEEEecCCCceeccCCCCC---CeEEEEeCCCCCeEEEEecC-----CcEEEEEcCCce
Q 040987 363 SDGAYLYSGGKE-------GVLVVWQLDTGKKKFLPRIGS---PLLYFTESPDPSLSSISCAD-----NQVHLLKMPSME 427 (762)
Q Consensus 363 ~~g~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~ 427 (762)
-+++.++.|+.+ ..+.+||..+.+......... ....+. -+++.++.|+.+ +.+.+||..+.+
T Consensus 154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 256666666542 358899998887654433222 122222 256777777654 468999998765
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEEcCCC
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYSLLDD 478 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 478 (762)
-.. +..... ......+..-+++.++.|+.++ .+.+||+.+.
T Consensus 232 W~~-~~~~~~---------~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 232 WRQ-VADMNM---------CRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEE-ECCCSS---------CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred Eee-CCCCCC---------ccccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 433 221111 1111112223677778877553 4888888765
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.48 Score=47.22 Aligned_cols=63 Identities=13% Similarity=0.001 Sum_probs=37.0
Q ss_pred CCCEEEEEecC-CeEEEEecCC--CceeccCCCC-C---CeEEEEeCCCCCeEEEEec-C---------CcEEEEEcCCc
Q 040987 364 DGAYLYSGGKE-GVLVVWQLDT--GKKKFLPRIG-S---PLLYFTESPDPSLSSISCA-D---------NQVHLLKMPSM 426 (762)
Q Consensus 364 ~g~~l~s~~~d-g~i~~wd~~~--~~~~~~~~~~-~---~v~~~~~s~~~~~l~~~~~-d---------~~i~i~d~~~~ 426 (762)
+++.++.|+.+ ..+.++|..+ .+...+...+ . ....+. -++++++.|+. + +.+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF--IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE--ETTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE--ECCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66666666643 5688999874 4554443332 1 122222 25677777665 2 46889999876
Q ss_pred eE
Q 040987 427 EI 428 (762)
Q Consensus 427 ~~ 428 (762)
+-
T Consensus 97 ~W 98 (357)
T 2uvk_A 97 SW 98 (357)
T ss_dssp EE
T ss_pred cE
Confidence 53
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.18 Score=45.03 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=79.8
Q ss_pred CCceEEEECCCCCEEEEEeCCeEEEEEccCchhhh--heeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCC
Q 040987 236 KEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAER--VVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGD 313 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~ 313 (762)
..+..++|+|+|.+.|+ .++.+.-.+..+.+... ..-.++-..--....++.|.|+|.+.++ .||.|+-++..+.
T Consensus 41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCS
T ss_pred ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcC
Confidence 36779999999998888 88887666655432210 0000111101112478999999987776 5698887764221
Q ss_pred ceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce------
Q 040987 314 RTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK------ 387 (762)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~------ 387 (762)
..- .-.. .-...-.+--..+..+.|.|+|.+.+.. |+.++-+..-++..
T Consensus 118 ~~~----~Wl~-------------------~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~ 172 (236)
T 1tl2_A 118 DTD----NWIA-------------------RATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLAR 172 (236)
T ss_dssp TTC----CHHH-------------------HSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHH
T ss_pred CCC----ceec-------------------cccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccc
Confidence 100 0000 0001111122467899999999766555 77765443322211
Q ss_pred -eccC-CCCCCeEEEEeCCCCCeEEEE
Q 040987 388 -KFLP-RIGSPLLYFTESPDPSLSSIS 412 (762)
Q Consensus 388 -~~~~-~~~~~v~~~~~s~~~~~l~~~ 412 (762)
..+. ..-.....+.|.+++.+.++.
T Consensus 173 ~~~~g~~g~~~yr~l~f~~~G~l~~v~ 199 (236)
T 1tl2_A 173 ATKIGQGGWDTFKFLFFSSVGTLFGVQ 199 (236)
T ss_dssp CEEEESSSGGGEEEEEECTTSCEEEEE
T ss_pred cceeccCCcceEEEEEECCCCcEEEEe
Confidence 0011 111233445678887776665
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.18 Score=45.06 Aligned_cols=93 Identities=11% Similarity=0.008 Sum_probs=56.8
Q ss_pred eEEEEecCCCeEEEEecCCcc------eeeeecC--cccccCCceeecCCCEEEEEeCCEEEEEEcccceE------Eee
Q 040987 44 FIFAVARSSGLCRTAEYPAVN------SKMIRGG--RSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQ------ISS 109 (762)
Q Consensus 44 ~~~a~~~~~g~i~~~~~~~~~------~~~~~~h--~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~------~~~ 109 (762)
+++++ ..| +++.=..+... +....|+ =..+.. ++|+|||.+.|. .+|.+.-.+..++.. -..
T Consensus 6 ~l~~v-~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~-laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~ 81 (236)
T 1tl2_A 6 MLRGV-YQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKF-LFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKK 81 (236)
T ss_dssp CEEEE-ETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSE-EEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEE
T ss_pred EEEEE-eCC-cEEecCCCCCcccchhhhccccCcccccccee-EEECCCccEEEE-eCCeEEEECCCCCCcccccccccE
Confidence 34444 445 76666666544 2233444 257776 999999998888 778877777655221 111
Q ss_pred ec--CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeC
Q 040987 110 LE--GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF 150 (762)
Q Consensus 110 l~--~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~ 150 (762)
+- +-.. -.++.|.|+| .+.++ .||.|.-|+-
T Consensus 82 IG~~Gw~~-F~a~~fD~~G-------~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 82 IGNGGWNQ-FQFLFFDPNG-------YLYAV--SKDKLYKASP 114 (236)
T ss_dssp EECSCGGG-CSEEEECTTS-------CEEEE--ETTEEEEESC
T ss_pred eccccccc-ceEEEECCCC-------CEEEe--CCCEEEEeCC
Confidence 11 1112 4889999999 34344 5688877764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.93 Score=44.21 Aligned_cols=177 Identities=9% Similarity=0.078 Sum_probs=90.5
Q ss_pred cEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe-----CC-------eEEEEEccCchhhhheeeeeeeccCc
Q 040987 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK-----QR-------KLLIWKVPDVEAERVVMRKITLHHTK 282 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~-----~~-------~i~iwd~~~~~~~~~~~~~~~~~~~~ 282 (762)
.+..||..+++-...............+...++++++.|. ++ .+.+||..+.+-. ...... ....
T Consensus 25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~~~~p-~~r~ 101 (318)
T 2woz_A 25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV--GLPPLP-SARC 101 (318)
T ss_dssp EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE--ECSCBS-SCBC
T ss_pred ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE--ECCCCC-cccc
Confidence 3788999888765321111122333444556777776553 11 2777888776543 111111 1111
Q ss_pred CeEEEEEcCCCcEEEEeecC-------CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccc
Q 040987 283 KLTVLAFHPTQRIVAAGDVT-------GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSE 355 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 355 (762)
....+.+ +++.++.|+.+ ..+.+||..+.+-.... .......+|.
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~------------------------~~p~~r~~~~-- 153 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK------------------------NLPIKVYGHN-- 153 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC------------------------CCSSCEESCE--
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC------------------------CCCCcccccE--
Confidence 1122222 67777777754 35778887665432210 0001111221
Q ss_pred eeEEEEecCCCEEEEEecC------CeEEEEecCCCceeccCCCCCC---eEEEEeCCCCCeEEEEecC-----CcEEEE
Q 040987 356 VSVLIFSSDGAYLYSGGKE------GVLVVWQLDTGKKKFLPRIGSP---LLYFTESPDPSLSSISCAD-----NQVHLL 421 (762)
Q Consensus 356 v~~~~~s~~g~~l~s~~~d------g~i~~wd~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~d-----~~i~i~ 421 (762)
++. .+++.++.|+.+ ..+.+||..+.+.........+ ...+. -+++.++.|+.+ ..+.+|
T Consensus 154 ---~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~y 227 (318)
T 2woz_A 154 ---VIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAF 227 (318)
T ss_dssp ---EEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEE
T ss_pred ---EEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEE
Confidence 222 466676777642 3589999998876544332221 12222 256777777643 357788
Q ss_pred EcCCceE
Q 040987 422 KMPSMEI 428 (762)
Q Consensus 422 d~~~~~~ 428 (762)
|+.+.+-
T Consensus 228 d~~~~~W 234 (318)
T 2woz_A 228 DLKTNKW 234 (318)
T ss_dssp ETTTCCE
T ss_pred ECCCCeE
Confidence 9887543
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.81 Score=44.60 Aligned_cols=110 Identities=9% Similarity=0.070 Sum_probs=64.9
Q ss_pred eeEEeeecCCeEEEEeCCCcceEEEEEec--cceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCC
Q 040987 134 SYCWTASLDGTIKYWDFSVPELLKTIDVK--FSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNT 211 (762)
Q Consensus 134 ~~l~s~s~d~~i~vWd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 211 (762)
.+++.++.||.|.-.|..+|+.+-+++.. .++....- +....+. .+.+ +..+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~------~~~~~~~---~~~v-----------------v~p~ 64 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQE------PSRLETY---ETLI-----------------IEPF 64 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCC------SCTTTSS---EEEE-----------------ECCS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecC------CccccCC---cEEE-----------------EEEC
Confidence 46778999999999999999999988765 23332210 0000000 0111 1125
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEE------------CCCCCEEEEEeCCeEEEEEccCchhh
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITI------------SSSGKYFGIRKQRKLLIWKVPDVEAE 269 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~------------spdg~~la~~~~~~i~iwd~~~~~~~ 269 (762)
.||.|..++..+|..........--...-+.. +.+|..++.+.++.+...|+.+|+..
T Consensus 65 ~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~ 134 (339)
T 2be1_A 65 GDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEII 134 (339)
T ss_dssp TTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEE
Confidence 78999999988885442111111001111111 24666667778999999999999864
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.52 E-value=1.6 Score=45.00 Aligned_cols=126 Identities=7% Similarity=-0.034 Sum_probs=64.9
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---CCeEEEEeeecccc
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEE 523 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~ 523 (762)
.....++|.|+|+++++-...+.|++++..++.. ..+........ ..........++|+|+ +..|.+........
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~-~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVN-DADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCC-CTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCcccc-ccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3557999999998776654445788888655432 22221111110 0001345789999996 55555443210000
Q ss_pred CC----CceeEEEEEEecCCCce----eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 524 GI----GSLVCLKFWVSGTQNKE----FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 524 ~~----~~d~~i~iwd~~~~~~~----~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
.. .....|.-|+....... ..+-....... ......++|.|||.+.++.+.
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEECC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEECC
Confidence 00 01346666666543211 11111011111 125789999999988777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.45 E-value=1.1 Score=44.50 Aligned_cols=148 Identities=9% Similarity=0.035 Sum_probs=69.8
Q ss_pred CeEEEEecCCCceeccCCCCC--Ce-EEEEeCCCCCeEEEEec------CCcEEEEEc--CCceEEEEEccCCCCCCCCC
Q 040987 375 GVLVVWQLDTGKKKFLPRIGS--PL-LYFTESPDPSLSSISCA------DNQVHLLKM--PSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~--~v-~~~~~s~~~~~l~~~~~------d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~ 443 (762)
..+.+||..+.+......... .. .+++. -+++.++.|+. ...+..||+ .+.+ ...+.....+.
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~-W~~~~~~~~~~---- 241 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLK-WNKLAPVSSPD---- 241 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CE-EEECCCSSTTT----
T ss_pred ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCc-EEecCCCCCCc----
Confidence 478999998887654332221 11 22222 25666666653 345777877 3332 22222111000
Q ss_pred cccCceeeEEEeCCCCEEEEeecC----------------------ceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAEN----------------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~d----------------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
......+...++++++.|+.+ ..+.+||+.+.+-.. +...... ..
T Consensus 242 ---~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~-------r~-- 308 (357)
T 2uvk_A 242 ---GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK-SGELSQG-------RA-- 308 (357)
T ss_dssp ---CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE-EEECSSC-------CB--
T ss_pred ---ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee-CCCCCCC-------cc--
Confidence 111222334466777777642 257889987654322 1111110 11
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT 544 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~ 544 (762)
...+..-+++.++.|+.+.... .-..+.++++++++....
T Consensus 309 ~~~~~~~~~~i~v~GG~~~~~~---~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 309 YGVSLPWNNSLLIIGGETAGGK---AVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp SSEEEEETTEEEEEEEECGGGC---EEEEEEEEEC-CCSCEEE
T ss_pred cceeEEeCCEEEEEeeeCCCCC---EeeeEEEEEEcCcEeEee
Confidence 1122335778888887431100 125677778887776543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=95.00 E-value=3.9 Score=42.26 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=139.5
Q ss_pred EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC---------------CcccCcee--eEEEe---CCCCEEEEee-cC
Q 040987 409 SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP---------------EEYKGLCR--DIAFN---HDGGLVALRA-EN 467 (762)
Q Consensus 409 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~---------------~~~~~~v~--~~~~s---~~~~~l~~~~-~d 467 (762)
+.+|+..|.++|+-+.+++.+..+.........- ....+... .+.+. .||++|+.-. .+
T Consensus 73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan 152 (638)
T 3sbq_A 73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN 152 (638)
T ss_dssp EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence 5677789999999999999998875443221100 00011112 22332 2677777765 34
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe--cCCCeEEEEeee-ccccC--C-------CceeEEEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS--QDGSLMSTVDIK-LAEEG--I-------GSLVCLKFWV 535 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~g~~l~~~~~~-~~~~~--~-------~~d~~i~iwd 535 (762)
..|...++...+.-..+.... ...+..+.|- |+-.|++.++.. .|... . +.-+.....|
T Consensus 153 ~RvAri~l~~~~~d~Ii~iPn---------~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 153 SRVARIRLDIMKCDKMITVPN---------VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp TEEEEEETTTTEEEEEEECTT---------CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred cceEEEECCcEeeceeEeCCC---------CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 567777777665443333221 3456777775 677777776633 11111 0 0112222233
Q ss_pred ecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC---------------cEEEEEcccccccc------ccc
Q 040987 536 SGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG---------------DFKVWICNDELQQK------DLQ 594 (762)
Q Consensus 536 ~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg---------------~i~iwd~~~~~~~~------~~~ 594 (762)
.++-+..+++.. .+....+...++|++.++.+.+. -+.++|+..-+... .+.
T Consensus 224 ~~tm~v~~Qv~v-------~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 224 AETMEMAFQVIV-------DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp TTTCSEEEEEEE-------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred CCccEEEEEEEc-------CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 333333333221 22344566788899888877542 26666664211110 000
Q ss_pred CCceeeeeecc-------------cCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCC------e-------EEEEec
Q 040987 595 SSGWSCHAVGS-------------YKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRN------V-------LVAVIG 646 (762)
Q Consensus 595 ~~~~~~~~~~~-------------~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~------~-------~~~~l~ 646 (762)
.+.... .... .-......+..+|||+++++++ +.++.++|++.- + .....+
T Consensus 297 g~gv~V-iD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e 375 (638)
T 3sbq_A 297 DSKTPV-LDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE 375 (638)
T ss_dssp TCCCCE-EECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB
T ss_pred CCCeeE-EccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc
Confidence 000000 0000 0123345688999999999987 899999998742 1 133333
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCC
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKL 683 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~ 683 (762)
.- -.-...+|.++|.-..|.--|.. |.-|+++..
T Consensus 376 ~G-lGPlHt~Fd~~G~aYTtlfidSq--vvkWni~~a 409 (638)
T 3sbq_A 376 LG-LGPLHTTFDGRGNAYTTLFIDSQ--VVKWNMEEA 409 (638)
T ss_dssp CC-SCEEEEEECSSSEEEEEETTTTE--EEEEEHHHH
T ss_pred CC-CcccEEEECCCCceEeeeeecce--EEEEeccHH
Confidence 22 23567999999955555557776 999999864
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=94.58 E-value=3.6 Score=39.90 Aligned_cols=106 Identities=13% Similarity=0.151 Sum_probs=58.9
Q ss_pred CCCEEEEEecC-------CeEEEEecCCCceeccCCCCCCeEE-EEeCCCCCeEEEEec------CCcEEEEEcCCceEE
Q 040987 364 DGAYLYSGGKE-------GVLVVWQLDTGKKKFLPRIGSPLLY-FTESPDPSLSSISCA------DNQVHLLKMPSMEII 429 (762)
Q Consensus 364 ~g~~l~s~~~d-------g~i~~wd~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~------d~~i~i~d~~~~~~~ 429 (762)
+++.++.|+.+ ..+.+||..+.+.......+.+... .+...+++.++.|+. ...+.+||..+.+-.
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~ 188 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK 188 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE
Confidence 56677777653 3588899988877654433322111 111246677777654 245899999876543
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-----ceEEEEEcCCCC
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-----YCIHFYSLLDDR 479 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i~d~~~~~ 479 (762)
.. .....+ ..-.+++. -+++.++.|+.+ ..+.+||+.+.+
T Consensus 189 ~~-~~~p~~--------r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 189 DL-APMKTP--------RSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp EE-CCCSSC--------CBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred EC-CCCCCC--------cccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 32 211100 01112222 366777777643 457889987764
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=3.6 Score=45.14 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=108.2
Q ss_pred cCCCEEEEEecC----CeEEEEecCCCceeccC-C-----CC---CCeEEEEeCCCCCeEEEEecC------CcEEEEEc
Q 040987 363 SDGAYLYSGGKE----GVLVVWQLDTGKKKFLP-R-----IG---SPLLYFTESPDPSLSSISCAD------NQVHLLKM 423 (762)
Q Consensus 363 ~~g~~l~s~~~d----g~i~~wd~~~~~~~~~~-~-----~~---~~v~~~~~s~~~~~l~~~~~d------~~i~i~d~ 423 (762)
.++..++.|+.+ ..+.+||..+++..... . .. ..-..+.+..+++.++.|+.+ +.+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 466777777753 46889999888765443 2 11 122233333277777777653 35889998
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc--eEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY--CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
.+.+-... .....+ ..-.+++...+++.++.|+.++ .+.+||..+..-. .... .+..+.. ....
T Consensus 476 ~t~~W~~~-~~~p~~--------R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~--~~~~-~g~~p~~--r~~~ 541 (695)
T 2zwa_A 476 KTREWSMI-KSLSHT--------RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK--DVTP-KDEFFQN--SLVS 541 (695)
T ss_dssp TTTEEEEC-CCCSBC--------CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE--ECCC-SSGGGGS--CCBS
T ss_pred CCCcEEEC-CCCCCC--------cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE--EccC-CCCCCCc--ccce
Confidence 87543322 111100 1112333334788888887654 6899998875321 1110 0000000 1112
Q ss_pred EEEEEecC-CCeEEEEeeeccccCCCceeEEEEEEecCCCc-----eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 502 TLVALSQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK-----EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 502 ~~~~~sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~-----~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
..+.+..+ ++.++.|+... ++......+.+||+.+..- -..+... ... ...-.+++...++++++.|+.
T Consensus 542 ~a~v~~~~~~~iyv~GG~~~--~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~-~R~~~~~~~~~~~~iyv~GG~ 616 (695)
T 2zwa_A 542 AGLEFDPVSKQGIILGGGFM--DQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLF-QRYGSQIKYITPRKLLIVGGT 616 (695)
T ss_dssp CEEEEETTTTEEEEECCBCT--TSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGG-CCBSCEEEEEETTEEEEECCB
T ss_pred eEEEEeCCCCEEEEECCcCC--CCCeeeCcEEEEEccCCccccceEEEEcCCC--CCC-CcccceEEEeCCCEEEEECCc
Confidence 33455555 66777776310 0001236799999998762 1111110 011 111122333334778888874
Q ss_pred C--------CcEEEEEcccccc
Q 040987 576 G--------GDFKVWICNDELQ 589 (762)
Q Consensus 576 d--------g~i~iwd~~~~~~ 589 (762)
+ ..+.+||+.+..-
T Consensus 617 ~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 617 SPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp CSSCCCCTTTSEEEEETTTTEE
T ss_pred cCCCCCCCCCeEEEEECCCCeE
Confidence 3 4588999876643
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=9.6 Score=41.74 Aligned_cols=196 Identities=9% Similarity=0.026 Sum_probs=102.2
Q ss_pred CCCCEEEEEe-----CCeEEEEEccCchhhhheee-ee----eeccCcCeEEEEEcC-CCcEEEEeecCC------eEEE
Q 040987 245 SSGKYFGIRK-----QRKLLIWKVPDVEAERVVMR-KI----TLHHTKKLTVLAFHP-TQRIVAAGDVTG------RILI 307 (762)
Q Consensus 245 pdg~~la~~~-----~~~i~iwd~~~~~~~~~~~~-~~----~~~~~~~v~~~~~sp-~~~~l~~~~~dg------~v~v 307 (762)
-++.+++.|. -..+.+||..+.+.. ... .. ....... .+++..+ +++.++.|+.++ .+.+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~--~~~~~~p~~~~p~~R~~-hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~ 472 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKID--MKNIEVSSSEVPVARMC-HTFTTISRNNQLLLIGGRKAPHQGLSDNWI 472 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEE--EEECCCCCSCCCCCCBS-CEEEEETTTTEEEEECCBSSTTCBCCCCEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEE--EeccCCCCCCCCccccc-eEEEEEccCCEEEEEcCCCCCCCccccEEE
Confidence 4566665443 246888998877643 111 00 0111112 2333333 777788877543 4778
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCC--eEEEEecCCC
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEG--VLVVWQLDTG 385 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg--~i~~wd~~~~ 385 (762)
||..+.+.... ..+.... .-.+++...+++.++.|+.++ .+.+||..+.
T Consensus 473 yd~~t~~W~~~----------------------------~~~p~~R-~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~ 523 (695)
T 2zwa_A 473 FDMKTREWSMI----------------------------KSLSHTR-FRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE 523 (695)
T ss_dssp EETTTTEEEEC----------------------------CCCSBCC-BSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred EeCCCCcEEEC----------------------------CCCCCCc-ccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence 88766532221 1111101 111223323778888887654 6899999988
Q ss_pred ceeccCC------CCCCeEEEEeCCC-CCeEEEEec--C-----CcEEEEEcCCceE-----EEEEccCCCCCCCCCccc
Q 040987 386 KKKFLPR------IGSPLLYFTESPD-PSLSSISCA--D-----NQVHLLKMPSMEI-----IRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 386 ~~~~~~~------~~~~v~~~~~s~~-~~~l~~~~~--d-----~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~ 446 (762)
....... ......++.+..+ ++.++.|+. + +.+.+||+.+..- ...+..... . .
T Consensus 524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~-~-----~- 596 (695)
T 2zwa_A 524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL-F-----Q- 596 (695)
T ss_dssp EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG-G-----C-
T ss_pred ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC-C-----C-
Confidence 7754432 1122233555554 667777765 2 4588999988761 222221100 0 0
Q ss_pred CceeeEEEeCCCCEEEEeecC--------ceEEEEEcCCCC
Q 040987 447 GLCRDIAFNHDGGLVALRAEN--------YCIHFYSLLDDR 479 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~d--------g~i~i~d~~~~~ 479 (762)
..-.+++...+++.++.|+.+ ..+.+||+.+.+
T Consensus 597 R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 597 RYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp CBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred cccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 111233334447777777742 458888887653
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=91.33 E-value=19 Score=39.26 Aligned_cols=240 Identities=6% Similarity=-0.010 Sum_probs=119.5
Q ss_pred EEEE-EcCCCcEEEEe-----ecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-----
Q 040987 285 TVLA-FHPTQRIVAAG-----DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----- 353 (762)
Q Consensus 285 ~~~~-~sp~~~~l~~~-----~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----- 353 (762)
..+. ++|++++++.+ +.-..++++|+.+++.+... +. -....
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~--------------------------~~-~~~k~~~~~~ 184 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNG--------------------------FE-PITNSGKLLE 184 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTC--------------------------SC-CBCTTCCBCC
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCC--------------------------cc-cccccccccc
Confidence 4455 89999988764 22347999999888655311 00 00000
Q ss_pred cceeEEEEecCCCEEEEE----------ecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCCCe-----EEEEec
Q 040987 354 SEVSVLIFSSDGAYLYSG----------GKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDPSL-----SSISCA 414 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~----------~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~~~-----l~~~~~ 414 (762)
.....++|..+...+++. +....|+.|.+.+... ++.......-.....++++++ ++..+.
T Consensus 185 ~~~~~~~W~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 264 (711)
T 4hvt_A 185 GKFTYPTWINKDTIIFNLVLHKNEITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANK 264 (711)
T ss_dssp EETCCEEEEETTEEEECCCCSTTCBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEES
T ss_pred cccceeeEECCCEEEEEeCCCCCCcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEec
Confidence 011234666333333321 1225688888776532 222222222334556677663 333221
Q ss_pred ---CCcEEEEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe----------ecCceEEEEEcCCCC
Q 040987 415 ---DNQVHLLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR----------AENYCIHFYSLLDDR 479 (762)
Q Consensus 415 ---d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----------~~dg~i~i~d~~~~~ 479 (762)
...+++.+... ++.. .+.... . ..+....++.+++.. ...+.|...++.+..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~-~l~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 331 (711)
T 4hvt_A 265 DFYNYDNYILDTKYKNLKLQ-KINMPS----------D--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLL 331 (711)
T ss_dssp SSSCEEEEEEECSSSSCEEE-ECCSCT----------T--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGG
T ss_pred ccCceeEEEEcCCCCCCcce-EeecCC----------c--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCccc
Confidence 23466666553 3322 222111 1 122344455555533 135678888887642
Q ss_pred -------ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC-ceeE-EEEEee
Q 040987 480 -------GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN-KEFT-LSTIVY 550 (762)
Q Consensus 480 -------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~-~~~~-~~~~~~ 550 (762)
....+..... ...+..+.+..+ .++++...+ ....+.++++.++. .... +.
T Consensus 332 ~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~-~l~~~~~~~-------~~~~l~~~~~~~g~~~~~~~i~---- 391 (711)
T 4hvt_A 332 KTESDKTSLKILFTPTA--------NEVFNFISTTKD-RVFLATYDN-------VVAKVVTFTLENEQWTKPVVLK---- 391 (711)
T ss_dssp SCGGGCTTCEEEECCCT--------TEEEEEEEECSS-CEEEEEEET-------TEEEEEEECEETTEECCCEEEC----
T ss_pred ccccccccceEEECCCC--------CCeEEEEEEECC-EEEEEEEEC-------CEEEEEEEECCCCceEEEeccC----
Confidence 1112111111 456888888876 444444421 44578888877663 1222 11
Q ss_pred cCCCCCceEEEEEcCCCCeEEE-EeC---CCcEEEEEcc
Q 040987 551 EPHRDAGISAVAFHPNRRAAVS-SSY---GGDFKVWICN 585 (762)
Q Consensus 551 ~~h~~~~v~~~~~spd~~~l~~-~~~---dg~i~iwd~~ 585 (762)
.+. .+.+.....++++..++. .+. -+.+..+|+.
T Consensus 392 lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 392 LPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred CCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 121 345666777777765443 332 3567777775
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=85.96 E-value=33 Score=35.09 Aligned_cols=56 Identities=21% Similarity=0.243 Sum_probs=36.2
Q ss_pred CCceEEEECCCCC--EEEEEeCCeEEEEEccCchhhhheeee----eee----ccCcCeEEEEEcCC
Q 040987 236 KEPQVITISSSGK--YFGIRKQRKLLIWKVPDVEAERVVMRK----ITL----HHTKKLTVLAFHPT 292 (762)
Q Consensus 236 ~~v~~~~~spdg~--~la~~~~~~i~iwd~~~~~~~~~~~~~----~~~----~~~~~v~~~~~sp~ 292 (762)
...+.|+|.|||. ++++-..|.|++++....... ..+.. ... ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~-~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFK-EPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCS-SCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeee-eeecCCcceeccCccccCCCcceeeEeCCC
Confidence 4678999999995 778888899999975432110 01111 111 12467889999996
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=83.78 E-value=29 Score=32.65 Aligned_cols=222 Identities=14% Similarity=0.060 Sum_probs=112.0
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEc
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~ 475 (762)
.|..++.... ..++. . +|.++.|-......+. .+......|..++...+. .++. . ||.|+.|-.
T Consensus 25 ~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg----------~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~ 88 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLT----------MPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGG 88 (282)
T ss_dssp SCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTS----------CCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEEC
T ss_pred CCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCC----------CCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeC
Confidence 5666665433 22333 4 8999999765421110 011111355666655432 3333 4 899999976
Q ss_pred CCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCC
Q 040987 476 LDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRD 555 (762)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~ 555 (762)
.....+.. ... . ...|..++...+...+++ . +.|+.|-......... . ... .
T Consensus 89 n~~Gqlg~---P~~-~------~~~v~~ia~G~~hs~al~-~-----------G~v~~wG~n~~gqlg~-~----~~~-~ 140 (282)
T 3qhy_B 89 NEDGQTTV---PAE-A------RSGVDAIAAGAWASYALK-D-----------GKVIAWGDDSDGQTTV-P----AEA-Q 140 (282)
T ss_dssp CTTSTTCC---CGG-G------SSSEEEEEEETTEEEEEE-T-----------TEEEEEECCTTSTTSC-C----GGG-G
T ss_pred CCCCCCCC---Ccc-c------CCCeEEEECcCCEEEEEe-C-----------CeEEEecCCCCCcCCC-C----ccC-C
Confidence 54332211 000 0 234666666555444444 3 5777776554322110 0 111 3
Q ss_pred CceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEe
Q 040987 556 AGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd 635 (762)
..|..++...+. .+.-. ||.++.|-........... .....|..++...+- .++. .||.|+.|-
T Consensus 141 ~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~p~-----------~~~~~v~~i~~G~~h-s~al-~~G~v~~wG 204 (282)
T 3qhy_B 141 SGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTVPA-----------EAQSGVDDVAGGIFH-SLAL-KDGKVIAWG 204 (282)
T ss_dssp SSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSCCG-----------GGGSSEEEEEECSSE-EEEE-ETTEEEEEE
T ss_pred CCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCCce-----------ecCCCeEEEEecCCE-EEEE-ECCeEEEEE
Confidence 467777665433 22233 7899999766533322110 113457777665443 3444 689999997
Q ss_pred CCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 636 PDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 636 ~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
....-.+..-......|..++-..+.. ++.. ||. |+.|--..
T Consensus 205 ~n~~gqlg~p~~~~~~v~~i~~G~~h~-~al~--~g~--v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPTEALSGVSAIASGEWYS-LALK--NGK--VIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCGGGGSSCCEEEECSSCE-EEEE--TTE--EEEESTTC
T ss_pred CCCCCCCCCCcccCCCceEEEcCCCEE-EEEE--CCE--EEEecCCC
Confidence 654322221111223466776555432 3333 776 99996544
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=83.60 E-value=36 Score=33.56 Aligned_cols=184 Identities=13% Similarity=0.102 Sum_probs=99.4
Q ss_pred eEEEEEcCCC--CceeeEEeecccccCCCCcceeEEEEEEe---cC----CCeEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 469 CIHFYSLLDD--RGISEVQVCERNHQPGDDVTVVVTLVALS---QD----GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 469 ~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---p~----g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
.|.+||+.++ +.+.++........+ ...+..+++. |+ +.++..++. ....|.++|+.++
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~----~S~l~di~VD~~~~~~~c~~~~aYItD~--------~~~gLIVydl~~~ 191 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEK----PTYFGGFAVDVANPKGDCSETFVYITNF--------LRGALFIYDHKKQ 191 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCC----GGGEEEEEEEESCTTTTSCSEEEEEEET--------TTTEEEEEETTTT
T ss_pred eEEEEECCCCCceeEEEEECCHHhccc----CCccceEEEecccCCCCCCccEEEEEcC--------CCCcEEEEECCCC
Confidence 5778888888 777776654332211 3457788887 22 334444432 4578999999987
Q ss_pred CceeEEEE---------EeecCCC---CCceEEEEEcCC----CCeEEEEeCCCcEEEEEcccccccccccCCceeeeee
Q 040987 540 NKEFTLST---------IVYEPHR---DAGISAVAFHPN----RRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAV 603 (762)
Q Consensus 540 ~~~~~~~~---------~~~~~h~---~~~v~~~~~spd----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 603 (762)
+..+.+.. ....|.. ...+..++++|+ ++.|......+ -++|.+.+..+........... .
T Consensus 192 ~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~--~ 268 (381)
T 3q6k_A 192 DSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPEL--L 268 (381)
T ss_dssp EEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEE--E
T ss_pred cEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEE--e
Confidence 65443321 0111110 247889999998 78888777655 3566665433221110001111 1
Q ss_pred cc-cCCCCeEEEEEc-CCCcEEEEEc-CCeEEEEeCCC-C---eEEEEec-c-ccCceeEEEEeCCCCEEEEE
Q 040987 604 GS-YKKKAMTAAAFS-ADGSVLAVAA-ETVITLWDPDR-N---VLVAVIG-E-TLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 604 ~~-~~~~~i~~~~~s-~dg~~la~~~-d~~i~iwd~~~-~---~~~~~l~-~-~~~~v~~~~~s~dg~~l~s~ 667 (762)
+. +....-..+++. .+|.++++-- ...|..|+..+ . +-...+. . .-.....+.+.++|.+.+.+
T Consensus 269 G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 269 GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 11 111333456775 5665555544 79999999886 1 1122221 1 11225667776666555544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=80.10 E-value=56 Score=33.40 Aligned_cols=116 Identities=14% Similarity=0.021 Sum_probs=59.8
Q ss_pred CeEEEEeCCCCC-eEEEEecCCcEEEEEcCCce---EEEEEccCCCCCCCCCcccCceeeEEEeCC----CCEEEEeecC
Q 040987 396 PLLYFTESPDPS-LSSISCADNQVHLLKMPSME---IIRSISGIKLPCPLPEEYKGLCRDIAFNHD----GGLVALRAEN 467 (762)
Q Consensus 396 ~v~~~~~s~~~~-~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~~l~~~~~d 467 (762)
....|+|.|||. .|+++...|.|++++..... .+..+..... .......+.....++++|+ +.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~-~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQ-SGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBC-CCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceec-cCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 357899999996 56666788999999754221 1111111000 0000011356788999996 4333332221
Q ss_pred ------------ceEEEEEcCCC--C-----ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 468 ------------YCIHFYSLLDD--R-----GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 468 ------------g~i~i~d~~~~--~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..|.-|.+..+ . ....+..... ... ......|+|.|||.+.++.+
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~---~~~--~H~g~~l~fgpDG~LYv~~G 157 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAE---LHR--KHLGGQLLFGPDGFLYIILG 157 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEE---SSS--SSCEEEEEECTTSCEEEEEC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCC---CCC--cccCCcEeECCCCcEEEEeC
Confidence 24545665432 1 1111111110 111 22367999999998777665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 762 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-12 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-07 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 2e-06 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 1e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 8e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-07 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 2e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-08 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 8e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 4e-07 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 6e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-06 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 4e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.002 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 5e-04 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 2e-05 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 3e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.002 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 5e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.004 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 65.6 bits (158), Expect = 8e-12
Identities = 49/366 (13%), Positives = 107/366 (29%), Gaps = 39/366 (10%)
Query: 335 PGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF----- 389
P + D +L + H S V + FS+DG YL +G V+++ G
Sbjct: 45 PALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDD 102
Query: 390 LPRIGSPLLYFTESPDPSLSSISCA----DNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445
P T S S I D + I + + + +
Sbjct: 103 SAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH 162
Query: 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA 505
+ + + G + + + + + L + + + + + A
Sbjct: 163 EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAA 222
Query: 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHP 565
S D + V + +G + H+D+ + +V F
Sbjct: 223 GSLDRA-----------------VRVWDSETGFLVERLDSENESGTGHKDS-VYSVVFTR 264
Query: 566 NRRAAVSSSYGGDFKVW-ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLA 624
+ ++ VS S K+W + N + + +C K + + A + + +
Sbjct: 265 DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 324
Query: 625 VAAET-VITLWDPDRNVLVAVIGE------TLTPIMNMSFVGSSEYLVATSWGSKPQLSV 677
++ + WD + ++ ++ S S K +
Sbjct: 325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCK--ARI 382
Query: 678 WNMSKL 683
W K+
Sbjct: 383 WKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.3 bits (134), Expect = 5e-09
Identities = 45/404 (11%), Positives = 105/404 (25%), Gaps = 37/404 (9%)
Query: 236 KEPQVITISSSGKYFGIRKQRKLLIWKV---PDVEAERVVMRKITLHHTKKLTVLAFHPT 292
K + + +++ + + P + E V +L HT + + F
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73
Query: 293 QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352
+A G ++R A + N + + ++
Sbjct: 74 GEYLATGC-NKTTQVYRVSDGSLVARLSDDSAAN------------KDPENLNTSSSPSS 120
Query: 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSIS 412
+ + FS DG +L +G ++ ++ +W ++ S
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWD---------IENRKIVMILQGHEQDIYSLDY 171
Query: 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHF 472
+ + G+ DG +A + + +
Sbjct: 172 FPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231
Query: 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLK 532
+ D V+ + ++ G V V ++DG + + + +
Sbjct: 232 W---DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS---LDRSVKLWNLQN 285
Query: 533 FWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592
+ + V + +VA N +S S W D+
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW---DKKSGNP 342
Query: 593 LQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE-TVITLWD 635
L H ++ + +V A + +W
Sbjct: 343 LLM--LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 40/313 (12%), Positives = 84/313 (26%), Gaps = 44/313 (14%)
Query: 80 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTV-IVVPASTPATKILSYCWT 138
FSND + L + T ++ S G ++ L A + +S+P++ +
Sbjct: 69 KFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVC 128
Query: 139 ASLDGTIK----YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVE 194
S DG ++ + + S +K +V
Sbjct: 129 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 188
Query: 195 DTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK 254
T + +A G S + +
Sbjct: 189 IWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAG---------------SLDRAVRVWD 233
Query: 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314
+ + D E E H + + F + V +G + + +W
Sbjct: 234 SETGFLVERLDSENESGT------GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN----- 282
Query: 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE 374
+ N + + + T+ H V + + + Y+ SG K+
Sbjct: 283 -------------LQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329
Query: 375 GVLVVWQLDTGKK 387
++ W +G
Sbjct: 330 RGVLFWDKKSGNP 342
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
A + + + +L + V + +G + L+GH+ V +V V S+ + + T
Sbjct: 315 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE-YNVFAT 373
Query: 139 ASLDGTIKYWDF 150
S D + W +
Sbjct: 374 GSGDCKARIWKY 385
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.5 bits (150), Expect = 4e-11
Identities = 40/369 (10%), Positives = 102/369 (27%), Gaps = 62/369 (16%)
Query: 106 QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSI 165
+ +L GH++PVT VI P S +AS D TIK WD+ + +T
Sbjct: 9 EKYALSGHRSPVTRVIFHPVF-------SVMVSASEDATIKVWDYETGDFERT----LKG 57
Query: 166 FSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESR 225
+ + + + + + D + + ++ N
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN----- 112
Query: 226 LAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLT 285
+++ S Q + H + +
Sbjct: 113 -----------GDHIVSASRDKTIKMWEVQTGYCVKTFT--------------GHREWVR 147
Query: 286 VLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADL 345
++ + ++A+ + +W + L + + ++
Sbjct: 148 MVRPNQDGTLIASCSNDQTVRVWV--------VATKECKAELREHRHVVECISWAPESSY 199
Query: 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESP 404
+ SE G +L SG ++ + +W + TG L + +
Sbjct: 200 SSISEATGSETKK--SGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257
Query: 405 DPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464
D + + + +++++ ++ + F+ V
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTLNA----------HEHFVTSLDFHKTAPYVVTG 307
Query: 465 AENYCIHFY 473
+ + + +
Sbjct: 308 SVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.1 bits (144), Expect = 3e-10
Identities = 37/328 (11%), Positives = 84/328 (25%), Gaps = 28/328 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411
H S V+ +IF + + S ++ + VW +TG D
Sbjct: 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------FERTLKGHTDSVQDIS 66
Query: 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471
++ M I + ++ +G + + + I
Sbjct: 67 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126
Query: 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531
+ + + + + + S D ++ V L
Sbjct: 127 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV-----ATKECKAEL 181
Query: 532 KFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591
+ + + + G +S S K+W + +
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 592 DLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPDRNVLVAVIGETLT 650
L V F + G + A+ + +WD + +
Sbjct: 242 TLVGHDNWVRGV-----------LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH 290
Query: 651 PIMNMSFVGSSEYLVATSWGSKPQLSVW 678
+ ++ F ++ Y+V S + VW
Sbjct: 291 FVTSLDFHKTAPYVVTGSVDQT--VKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 57.4 bits (137), Expect = 2e-09
Identities = 48/376 (12%), Positives = 107/376 (28%), Gaps = 83/376 (22%)
Query: 275 KITLH-HTKKLTVLAFHPTQRIVAAGDVTGRILIW-----------RGFGDRTFATNDNK 322
K L H +T + FHP ++ + I +W +G D + +
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 323 MNLNLMNNEEERPGVRDNDDADLCTTWHW-HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381
L + + + C H VS + +G ++ S ++ + +W+
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 382 LDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCP 440
+ TG + + D +L + D V + + + E +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE------ 183
Query: 441 LPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVV 500
++ + I++ + ++ S
Sbjct: 184 ----HRHVVECISWAPESSYSSISEATGSETKKSGKPGP--------------------- 218
Query: 501 VTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA 560
L++ S+D + +K W T TL D +
Sbjct: 219 -FLLSGSRDKT-------------------IKMWDVSTGMCLMTLVG------HDNWVRG 252
Query: 561 VAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG 620
V FH + +S + +VW D ++ C + + +T+ F
Sbjct: 253 VLFHSGGKFILSCADDKTLRVW---------DYKN--KRCMKTLNAHEHFVTSLDFHKTA 301
Query: 621 SVLAVAAE-TVITLWD 635
+ + + +W+
Sbjct: 302 PYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 1e-07
Identities = 37/343 (10%), Positives = 78/343 (22%), Gaps = 53/343 (15%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
F ++ + T+ ++ TG +L+GH V + + +
Sbjct: 24 IFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTI 83
Query: 139 ASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRE 198
D ++ +
Sbjct: 84 KLWDFQGFECIRTMH---------------------------GHDHNVSSVSIMPNGDHI 116
Query: 199 TTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKL 258
+ S K + + C T R + + + S+
Sbjct: 117 VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQT---------- 166
Query: 259 LIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFAT 318
+V V + H + +++ P + + TG G +
Sbjct: 167 --VRVWVVATKECKAELR--EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS 222
Query: 319 NDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLV 378
+ + D T H + V ++F S G ++ S + L
Sbjct: 223 GSRDKTIKMW----------DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272
Query: 379 VWQLDTGKK-KFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420
VW + K L + D V +
Sbjct: 273 VWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (107), Expect = 1e-05
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 68 IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
+ G ++V F + K +L C T+ ++ + +L H+ VT++ +
Sbjct: 243 LVGHDNWVRGV-LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 301
Query: 127 TPATKILSYCWTASLDGTIKYWD 149
Y T S+D T+K W+
Sbjct: 302 -------PYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.7 bits (148), Expect = 9e-11
Identities = 45/333 (13%), Positives = 92/333 (27%), Gaps = 43/333 (12%)
Query: 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS 407
T H +++ + + +D L S ++G L++W T K ++
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK----------VHAIPLRSSW 99
Query: 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467
+ + + A + ++ I + + + + R +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC------RFLD 153
Query: 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527
S D + T V ++L+ D L +
Sbjct: 154 DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGA---------C 204
Query: 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587
K W T H I+A+ F PN A + S +++ +
Sbjct: 205 DASAKLWDVREGMCRQTF-----TGHESD-INAICFFPNGNAFATGSDDATCRLFDLRAD 258
Query: 588 LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPDRNVLVAVIG 646
+T+ +FS G +L + +WD + V+
Sbjct: 259 ---------QELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA 309
Query: 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWN 679
+ + + SW S L +WN
Sbjct: 310 GHDNRVSCLGVTDDGMAVATGSWDSF--LKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.5 bits (132), Expect = 8e-09
Identities = 36/326 (11%), Positives = 72/326 (22%), Gaps = 51/326 (15%)
Query: 109 SLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTID-----VKF 163
+L GH A + + S +AS DG + WD + I V
Sbjct: 50 TLRGHLAKIYAMHWGTDS-------RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 164 SIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTE 223
++ + + L H +
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 224 SRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLI--------WKVPDVEAERVVMRK 275
+ ++ T + L K+ DV +
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--Q 220
Query: 276 ITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335
H + + F P A G ++ D+
Sbjct: 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM------------------ 262
Query: 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK-KFLPRIG 394
+ ++ + FS G L +G + VW + L
Sbjct: 263 ----------TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD 312
Query: 395 SPLLYFTESPDPSLSSISCADNQVHL 420
+ + + D + D+ + +
Sbjct: 313 NRVSCLGVTDDGMAVATGSWDSFLKI 338
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.5 bits (119), Expect = 4e-07
Identities = 36/337 (10%), Positives = 89/337 (26%), Gaps = 49/337 (14%)
Query: 262 KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDN 321
+ V ++ R+ H K+ + + R++ + G+++IW +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL 95
Query: 322 K----------MNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371
+ + N + + + S +L
Sbjct: 96 RSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
Query: 372 GKE------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS 425
+ + ++ + +PD L D L +
Sbjct: 156 QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 426 MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQ 485
++ +G ++ I F +G A +++ +
Sbjct: 216 GMCRQTFTG----------HESDINAICFFPNGNAFATGSDDATCRLFD--------LRA 257
Query: 486 VCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545
E D++ +T V+ S+ G L+ W + ++ L
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAG---------YDDFNCNVWDALKADRAGVL 308
Query: 546 STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582
H + +S + + A + S+ K+W
Sbjct: 309 -----AGHDNR-VSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 4e-07
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT 138
+FS + LL +++ + L GH V+ + V T
Sbjct: 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDG-------MAVAT 329
Query: 139 ASLDGTIKYWD 149
S D +K W+
Sbjct: 330 GSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 50.1 bits (118), Expect = 5e-07
Identities = 43/366 (11%), Positives = 104/366 (28%), Gaps = 44/366 (12%)
Query: 24 SKLKAIKIHILIERKPRSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSN 83
+ + +K I RK + + + + ++ + + +RG + + + +
Sbjct: 9 QEAEQLKNQIRDARKACADATLSQI--TNNIDPVGRIQMRTRRTLRGHLAKIYAM-HWGT 65
Query: 84 DVKRLLVCTSN-TVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142
D + L+ + + + I+ + T ++ ++ + V T P+ + +
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKS 202
+ + V L S + + + + T
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 203 HKKEPRPNTMNGRICKCNLTES----RLAGGVTLAEMKEPQ----VITISSSGKYFGIRK 254
S + G+ + I +G F
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245
Query: 255 QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314
++ D+ A++ +M + +T ++F + R++ AG +W
Sbjct: 246 DDA--TCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW------ 297
Query: 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE 374
D AD H + VS L + DG + +G +
Sbjct: 298 ------------------------DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 375 GVLVVW 380
L +W
Sbjct: 334 SFLKIW 339
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 57.5 bits (137), Expect = 2e-09
Identities = 40/371 (10%), Positives = 85/371 (22%), Gaps = 46/371 (12%)
Query: 70 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTP- 128
R YV+ P F+ + G I ++G P +V +
Sbjct: 13 ARRVYVNDPAHFAAV---------TQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFI 61
Query: 129 --ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
A+ + S ++ +D I++ + +V P + P
Sbjct: 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTY----PWMTSLTPDG 117
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
+ + +
Sbjct: 118 KTLLFYQFSPAPAVGVV------DLEGKAFKRMLDV----PDCYHIFPTAPDTFFMHCRD 167
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
G + + E + A+ + TG+I
Sbjct: 168 GSL--------AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
+ D +H + + +
Sbjct: 220 QI--------DLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD 271
Query: 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPD--PSLSSISCADNQVHLLKMP 424
+VV TG++ +G + S D P L ++S D +++
Sbjct: 272 EWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE 331
Query: 425 SMEIIRSISGI 435
S E +RS++ +
Sbjct: 332 SGEELRSVNQL 342
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.9 bits (130), Expect = 1e-08
Identities = 30/304 (9%), Positives = 65/304 (21%), Gaps = 16/304 (5%)
Query: 80 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTA 139
+ ++ C +V + H T P+ YC +
Sbjct: 24 GNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGY-------YCASG 76
Query: 140 SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRET 199
+ G ++ WD + + + + S + + + V
Sbjct: 77 DVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 136
Query: 200 TKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLL 259
T + + MN K + ++G S + +
Sbjct: 137 TSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR 196
Query: 260 IWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATN 319
+ A I L++ T + + A+
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 320 DNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVV 379
+ + N + T E L L S G +
Sbjct: 257 SADKTIKIWNVATLKV---------EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 380 WQLD 383
+
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 38.7 bits (88), Expect = 0.002
Identities = 28/302 (9%), Positives = 66/302 (21%), Gaps = 33/302 (10%)
Query: 337 VRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396
+ H + +V S G Y SG G + +W
Sbjct: 42 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT----- 96
Query: 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456
P ++++ E + + +
Sbjct: 97 --TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDF 154
Query: 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516
+ ++ + + + V +
Sbjct: 155 KPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR--------------YNPD 200
Query: 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576
A G + L V GT+ F ++ H + + + P+ S+S
Sbjct: 201 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASAD 259
Query: 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWD 635
K+W ++ ++ + + L + I +
Sbjct: 260 KTIKIW---------NV-ATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN 309
Query: 636 PD 637
P+
Sbjct: 310 PE 311
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 54.0 bits (128), Expect = 3e-08
Identities = 42/330 (12%), Positives = 79/330 (23%), Gaps = 27/330 (8%)
Query: 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCW 137
PA + ++V N + + ++ S ++ P +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMM---APDNRTA--YV 56
Query: 138 TASLDGTIKYWDFSVPELLKTI-------DVKFSIFSMVIPSLLRQPAQSDEKPPKLFAY 190
+ G I D + +V S++S I ++ + +L +
Sbjct: 57 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116
Query: 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF 250
V+ R S + + R A +L +GKY
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176
Query: 251 GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVL--AFHPTQRIVAAGDVTGRILIW 308
R K + H + F ++ A D+ L
Sbjct: 177 VALPLRNW-NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVR-DNDDADLCTTWHW----------HPSEVS 357
+T + + +
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 295
Query: 358 VLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387
+ F G LY GG L V+ DT +K
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.3 bits (103), Expect = 4e-05
Identities = 33/334 (9%), Positives = 75/334 (22%), Gaps = 53/334 (15%)
Query: 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLSSISCA-D 415
+ Y+ L V + + K + +PD + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 416 NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSL 475
++ + + + + + +P E A + DG V
Sbjct: 62 GDIYGIDLDTCKNTFHAN----LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY 117
Query: 476 LDDRGISEVQVCERNHQ----PGDDVTVVVTLVALSQDGSLMSTVD----IKLAEEGIGS 527
+ EV + + V L+ + DGSL + +
Sbjct: 118 VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTV 177
Query: 528 LVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISA-----VAFHPNRRAAVSSSYGGDFKVW 582
+ L+ W + + + F +++ ++ +
Sbjct: 178 ALPLRNWNRKGYSAPDV--LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV 235
Query: 583 ICNDELQQKDLQSSGWSCHAVGSYKKKAMTAA---------------------------- 614
+ + G K
Sbjct: 236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYY 295
Query: 615 --AFSADGSVLAVAAET-VITLWDPDRNVLVAVI 645
AF G L + + +++PD V I
Sbjct: 296 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNI 329
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 39.0 bits (89), Expect = 0.002
Identities = 7/82 (8%), Positives = 18/82 (21%), Gaps = 8/82 (9%)
Query: 80 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTA 139
S + N ++ + I + V +
Sbjct: 258 LRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGD-------KLYLG 309
Query: 140 SLDGTIKYWDFSVPELLKTIDV 161
+ ++ E +K I +
Sbjct: 310 GTFNDLAVFNPDTLEKVKNIKL 331
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.2 bits (123), Expect = 1e-07
Identities = 46/371 (12%), Positives = 85/371 (22%), Gaps = 80/371 (21%)
Query: 80 AFSNDVKRLLVCTSN-TVSIFSTSTG--LQISSLEGHKAPVTTVIVVPASTPATKILSYC 136
A++ D ++ +C +N V I+ S +Q+ L+ H VT V P S +
Sbjct: 14 AWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------NRI 66
Query: 137 WTASLDGTIK--------------------------------------------YWDFSV 152
T D F
Sbjct: 67 VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126
Query: 153 PELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTM 212
+ SL P + + P P
Sbjct: 127 ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGS 186
Query: 213 NGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVV 272
+ S G V S + + ++ +
Sbjct: 187 KMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS-------HDSTVCLADA-----DKKM 234
Query: 273 MRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRILIW---------RGFGDRTFATNDNK 322
T L + F +VAAG D + + G D ++
Sbjct: 235 AVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 294
Query: 323 MNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY----LYSGGKEGVLV 378
+ ++ + A H + VS + S G + G +G +
Sbjct: 295 LTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMS 354
Query: 379 VWQLDTGKKKF 389
+W + + +
Sbjct: 355 IWDVRSLESAL 365
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.5 bits (116), Expect = 8e-07
Identities = 31/332 (9%), Positives = 77/332 (23%), Gaps = 25/332 (7%)
Query: 350 HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI---GSPLLYFTESPDP 406
+ +S ++ D + + +++ K + + + +PD
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466
+ D ++ + P + R + + + A+ +
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWK--------PTLVILRINRAARCVRWAPNEKKFAVGSG 115
Query: 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526
+ I + + ++ + L GS ++ I
Sbjct: 116 SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK--CRIFSAYIK 173
Query: 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586
+ F + V F N S+ + +
Sbjct: 174 EVEERPAPTPWGSKMPFGELMFESSSSCGW-VHGVCFSANGSRVAWVSHDSTVCLADADK 232
Query: 587 ELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIG 646
A + + + A F + S++A + L+ D G
Sbjct: 233 -----------KMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFG 281
Query: 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVW 678
L S G + + K
Sbjct: 282 GRLDVPKQSSQRGLTARERFQNLDKKASSEGS 313
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 8e-04
Identities = 37/372 (9%), Positives = 87/372 (23%), Gaps = 58/372 (15%)
Query: 241 ITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299
+ I ++ I+ + + V H ++T + + P +
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIY---EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 300 DVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR------------------DND 341
+W G T P + +ND
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 342 DADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFT 401
S V L + + L +G + ++ + + P
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP-------- 181
Query: 402 ESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461
+ + L S + G+ +A+ V
Sbjct: 182 --------TPWGSKMPFGELMFESSSSCGWVHGVCFSAN--------GSRVAWVSHDSTV 225
Query: 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQP----GDDVTVVVTLVALSQDGSLMSTVD 517
L + + +L + D V+ T + + S +D
Sbjct: 226 CLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLD 285
Query: 518 IKLAEEGIGSLVCLKFW---VSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV--- 571
+ G +F + + H+++ +S ++ +A
Sbjct: 286 VPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS-VSQISVLSGGKAKCSQF 344
Query: 572 -SSSYGGDFKVW 582
++ G +W
Sbjct: 345 CTTGMDGGMSIW 356
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.5 bits (90), Expect = 0.001
Identities = 9/103 (8%), Positives = 28/103 (27%), Gaps = 28/103 (27%)
Query: 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR 338
+ ++ A++ + +A + I+ +
Sbjct: 5 FLVEPISCHAWNKDRTQIAICPNNHEVHIYE----------------------------K 36
Query: 339 DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381
+ H +V+ + ++ D + + G + VW
Sbjct: 37 SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.6 bits (119), Expect = 4e-07
Identities = 49/351 (13%), Positives = 83/351 (23%), Gaps = 26/351 (7%)
Query: 70 GGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129
G + S ++ + + QI++L H V V + +
Sbjct: 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTL-NHGEVVCAVTISNPT--- 63
Query: 130 TKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFA 189
+ +T G +K WD S S + Q +
Sbjct: 64 ----RHVYTGG-KGCVKVWDIS---------------HPGNKSPVSQLDCLNRDNYIRSC 103
Query: 190 YLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKY 249
L + + + + A + + S
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG 163
Query: 250 FGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309
+ KL T R GR L
Sbjct: 164 NIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW--DLREGRQLQQH 221
Query: 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY 369
F + F+ L E + + H H S V L F+ G +
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281
Query: 370 SGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420
S GK+ +L W+ G F + S +L S D D + +
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 34/360 (9%), Positives = 83/360 (23%), Gaps = 73/360 (20%)
Query: 277 TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPG 336
TL+H + + + R V G G + +W ++ + + P
Sbjct: 47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVW-----------------DISHPGNKSP- 87
Query: 337 VRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSP 396
+ + DG L GG+ L +W
Sbjct: 88 -------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIW---------------- 124
Query: 397 LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456
+ ++ + + L + + + + + H
Sbjct: 125 --DLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH 182
Query: 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516
G + N ++ D + + E D T + + G +
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL--- 239
Query: 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576
+ S + ++ + ++ F + VS+
Sbjct: 240 -------------AVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 577 GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE-TVITLWD 635
W + S + + S D + + T+++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSS------------VLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.9 bits (112), Expect = 3e-06
Identities = 26/314 (8%), Positives = 62/314 (19%), Gaps = 47/314 (14%)
Query: 80 AFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE-----GHKAPVTTVIVVP------ASTP 128
SN + + V ++ S S + + + ++P
Sbjct: 58 TISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE 117
Query: 129 ATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLF 188
A+ + + A S P S S +
Sbjct: 118 ASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177
Query: 189 AYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGK 248
+ D + T + + + +G+
Sbjct: 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGE 237
Query: 249 YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308
+ + + + + + H + L F + + + W
Sbjct: 238 WLAVGMESSNVEVLHVNKP-----DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAW 292
Query: 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYL 368
S V S D Y+
Sbjct: 293 ------------------------------RTPYGASIFQSK-ESSSVLSCDISVDDKYI 321
Query: 369 YSGGKEGVLVVWQL 382
+G + V+++
Sbjct: 322 VTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.6 bits (88), Expect = 0.002
Identities = 27/288 (9%), Positives = 67/288 (23%), Gaps = 14/288 (4%)
Query: 231 TLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290
TL + +TIS+ ++ + + +W + + V + L+ +
Sbjct: 47 TLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL 106
Query: 291 PTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH 350
P + G + IW + + P +
Sbjct: 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166
Query: 351 WHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG---KKKFLPRIGSPLLYFTESPDPS 407
L+ G + + +L TG +
Sbjct: 167 VWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQ 226
Query: 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467
+ S+ L + + K ++ + F + G ++
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286
Query: 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515
++ + + + V +S D + T
Sbjct: 287 NLLNAWRTPYGA-----SIFQSKESSS------VLSCDISVDDKYIVT 323
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.9 bits (117), Expect = 6e-07
Identities = 35/356 (9%), Positives = 93/356 (26%), Gaps = 17/356 (4%)
Query: 68 IRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPAS 126
+RG + V + + ++ + ++ + + L GH V +
Sbjct: 8 LRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL----KY 61
Query: 127 TPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPK 186
++S ++ + + ++ S +
Sbjct: 62 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121
Query: 187 LFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSS 246
++ +E++ E + + N + G + I S
Sbjct: 122 VWKL-----PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
G Y + K + + T++ ++ ++ I G ++
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236
Query: 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGA 366
+ + D +D + H + ++ F
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYS-RKFSYHHTNLSAITTFYVSDN 295
Query: 367 YLYSGGKEGVLVVWQLDTGK--KKFLPRIGSPLLYFTESPDPSLSSISCADNQVHL 420
L SG E ++ L +GK + + + ++++ D Q L
Sbjct: 296 ILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVE-KDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 2e-06
Identities = 37/352 (10%), Positives = 80/352 (22%), Gaps = 19/352 (5%)
Query: 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPD 405
TT H + V + + Y+ +G + ++ V+ K L + +
Sbjct: 6 TTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG 64
Query: 406 PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVAL-- 463
L S S L + I + +
Sbjct: 65 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124
Query: 464 ------RAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517
++ H Y L+ V V + GS +T+
Sbjct: 125 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 184
Query: 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-------SAVAFHPNRRAA 570
+ + + D I + + A
Sbjct: 185 VWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 244
Query: 571 VSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETV 630
+ K + + + F ++L +E
Sbjct: 245 LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 304
Query: 631 ITLWDPDRNVLVAVIGETLT-PIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681
+++ LV I +++F G + + A + L + + S
Sbjct: 305 FNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILDFS 355
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 49.0 bits (115), Expect = 1e-06
Identities = 34/305 (11%), Positives = 68/305 (22%), Gaps = 26/305 (8%)
Query: 350 HWHPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTE------ 402
V + + G Y + K LV L TG+ + +P
Sbjct: 30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89
Query: 403 SPDPS-LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461
SPD L+ + L E +A+ DG +
Sbjct: 90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKL 149
Query: 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521
+ + +Q E DV G + +
Sbjct: 150 YGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLA--VWNQHESSGVMATPFYTARK 207
Query: 522 EEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKV 581
+ + + + ++ S RA + + +
Sbjct: 208 DIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNV---LES 264
Query: 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-AETVITLWDPDRNV 640
+ K + + S DGS + + A + +D +
Sbjct: 265 FDLEKNASIKRVPLPHSY------------YSVNVSTDGSTVWLGGALGDLAAYDAETLE 312
Query: 641 LVAVI 645
+
Sbjct: 313 KKGQV 317
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 33/321 (10%), Positives = 75/321 (23%), Gaps = 27/321 (8%)
Query: 86 KRLLVCTS--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG 143
+ ++ + + + + T + A T ++ + P +I T +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMV--APGGRIAYA--TVNKSE 56
Query: 144 TIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203
++ D E L ID+ L A S + V +
Sbjct: 57 SLVKIDLVTGETLGRIDLSTP---EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113
Query: 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263
+ R + A ++ + + +
Sbjct: 114 PTRVALYDAETLSRRKAFEAPRQITMLAWAR-DGSKLYGLGRDLHVMDPEAGTLVEDKPI 172
Query: 264 PDVEAERVVMRKI-------TLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTF 316
EAE + +L
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232
Query: 317 ATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW----------HPSEVSVLIFSSDGA 366
M++ + R ++ ++ P + S+DG+
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGS 292
Query: 367 YLYSGGKEGVLVVWQLDTGKK 387
++ GG G L + +T +K
Sbjct: 293 TVWLGGALGDLAAYDAETLEK 313
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 1e-06
Identities = 54/370 (14%), Positives = 97/370 (26%), Gaps = 57/370 (15%)
Query: 100 STSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159
L+GH V T + + + S D T+K W + L+T+
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCG--------NRIVSGSDDNTLKVWSAVTGKCLRTL 53
Query: 160 D-----VKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214
V S I + + +T ++G
Sbjct: 54 VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSG 113
Query: 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMR 274
G M + + ++ KV D E E +
Sbjct: 114 SRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV-KVWDPETETCL-- 170
Query: 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEER 334
HT ++ L F V +G + I +W
Sbjct: 171 HTLQGHTNRVYSLQFDGIH--VVSGSLDTSIRVW-------------------------- 202
Query: 335 PGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIG 394
D + + T H S S + + L SG + + +W + TG+ +
Sbjct: 203 ----DVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGP 256
Query: 395 SP--LLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDI 452
+ + + S D V L + + E IR+ L G+ I
Sbjct: 257 NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN-----LVTLESGGSGGVVWRI 311
Query: 453 AFNHDGGLVA 462
++ + A
Sbjct: 312 RASNTKLVCA 321
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 4e-05
Identities = 35/342 (10%), Positives = 74/342 (21%), Gaps = 34/342 (9%)
Query: 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVV 123
K+++G +V + R++ + NT+ ++S TG + +L GH V + +
Sbjct: 9 PKVLKGHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR 66
Query: 124 PASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183
+ + + + E
Sbjct: 67 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIET 126
Query: 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITI 243
L + + + + + + TL
Sbjct: 127 GQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL--HTLQGHTNRVYSLQ 184
Query: 244 SSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303
+ +W V I + I+ +G+
Sbjct: 185 FDGIHVVSGSLDTSIRVWDVET-------GNCIHTLTGHQSLTSGMELKDNILVSGNADS 237
Query: 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW------------ 351
+ IW + T + +D T W
Sbjct: 238 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Query: 352 ------HPSEVSVLIFSSDGAYLYSGGKEG----VLVVWQLD 383
V + S+ G + G L+V D
Sbjct: 298 TLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 46.0 bits (107), Expect = 1e-05
Identities = 27/335 (8%), Positives = 73/335 (21%), Gaps = 34/335 (10%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS 409
P + + D + G L ++ TGK + + + +
Sbjct: 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFA 100
Query: 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYC 469
++ ++ + + + + +
Sbjct: 101 VVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160
Query: 470 IHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLV 529
IH Y ++ R I + L LS
Sbjct: 161 IHVYD-MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSL------------------ 201
Query: 530 CLKFWVSGTQNKEFTLSTIVYE-PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDEL 588
N F + + + P + P + + Y + +
Sbjct: 202 -DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSS--- 257
Query: 589 QQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE-TVITLWDPDRNVLVAVIGE 647
++ + + + A E V+ +D + V
Sbjct: 258 -PINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN- 315
Query: 648 TLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSK 682
+ ++ + ++ K + + + K
Sbjct: 316 ---NLTDLRLSADRKTVMVRKDDGK--IYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 0.002
Identities = 19/145 (13%), Positives = 42/145 (28%), Gaps = 5/145 (3%)
Query: 289 FHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT 348
F + + G + + ++ D D +
Sbjct: 214 FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIP 271
Query: 349 WHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL 408
SV + AY ++GVL+ + + T K + + + L S D
Sbjct: 272 LESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---VTEVKNNLTDLRLSADRKT 328
Query: 409 SSISCADNQVHLLKMPSMEIIRSIS 433
+ D +++ + E R++
Sbjct: 329 VMVRKDDGKIYTFPLEKPEDERTVE 353
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 2e-05
Identities = 37/305 (12%), Positives = 87/305 (28%), Gaps = 32/305 (10%)
Query: 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS 407
+ H ++ L S+DG L+S EG + W + TG + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH------ATMITG 60
Query: 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467
+ + S D + SG+ + + +A + DG +
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 468 ----------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511
Y +L +D+ V + V+ V +
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV 571
+++V + + + + + F L+ A ++ V++ P+
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 572 SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAE-TV 630
+ S VW ++ + + + + + + A + +
Sbjct: 241 TGSLDNSVIVW---------NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSN 291
Query: 631 ITLWD 635
I W+
Sbjct: 292 IKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 5e-04
Identities = 31/297 (10%), Positives = 66/297 (22%), Gaps = 31/297 (10%)
Query: 110 LEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDV--KFSIFS 167
GH +T + ++A +G I WD S + I
Sbjct: 8 RYGHNKAITALSSSADG-------KTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60
Query: 168 MVIPSLLRQPAQSDEKPPKLFAYLSVE------DTRETTKSHKKEPRPNTMNGRICKCNL 221
+ S S + K+ + + + + C
Sbjct: 61 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120
Query: 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHT 281
+ + G ++ S + + V + V K +H
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180
Query: 282 KKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVR--- 338
+ +V + +VA I TN + + P
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240
Query: 339 -------------DNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL 382
+ H + + + S G++ + W +
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 45.3 bits (107), Expect = 2e-05
Identities = 21/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 546 STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605
+ ++ D + + A S+ Y + V + + D V +
Sbjct: 166 MDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDL--AGTMRNDRDW-----VVVFN 218
Query: 606 YKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV 665
++ AA G+ + V + + I P ++ +Y +
Sbjct: 219 VER----IAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHG-LNTSPDGKYFI 273
Query: 666 ATSWGSKPQLSVWNMSKL 683
A S P +SV + KL
Sbjct: 274 ANGKLS-PTVSVIAIDKL 290
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 44.9 bits (105), Expect = 3e-05
Identities = 34/334 (10%), Positives = 83/334 (24%), Gaps = 34/334 (10%)
Query: 79 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSY 135
D+ L T + +++ + + ++ A + + + + + Y
Sbjct: 24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRM-----SASGR---Y 75
Query: 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFA-----Y 190
D I D E K ++K I + + S + E +
Sbjct: 76 LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES---SKFKGYEDRYTIAGAYWPPQ 132
Query: 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEM----KEPQVITISSS 246
++ D R T++ + + + E KE + + +
Sbjct: 133 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY 192
Query: 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRIL 306
+ + D + +T + + +R+ A DV
Sbjct: 193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH 252
Query: 307 IWRG----FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362
RG + + + ++ P +
Sbjct: 253 PGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTH 312
Query: 363 SDGAYLY-------SGGKEGVLVVWQLDTGKKKF 389
++LY + V+ L K+
Sbjct: 313 PKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKY 346
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 1e-04
Identities = 28/358 (7%), Positives = 84/358 (23%), Gaps = 50/358 (13%)
Query: 273 MRKITLH--HTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNN 330
M+ + + ++ + P++ ++ G + +++
Sbjct: 1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYK--------------------- 39
Query: 331 EEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQLDTGKKKF 389
+ + F + +Y G +G ++ L
Sbjct: 40 ------FDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ 93
Query: 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449
L + A I + K
Sbjct: 94 ALTNNEANLGICRICKYGDDKLIAASWDGL--IEVIDPRNYGDGVIAVKNLNSNNTKVKN 151
Query: 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509
+ + + + + N + ++ L + DV ++
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYAC 211
Query: 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA 569
S+ V ++ ++ K + + + Y + ++ F P +
Sbjct: 212 SSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN------SIEFSPRHKF 265
Query: 570 AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627
++ G W LQ + + + + + ++L +A
Sbjct: 266 LYTAGSDGIISCW----NLQTRKKIKNFAKFNED--------SVVKIACSDNILCLAT 311
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 6e-04
Identities = 31/327 (9%), Positives = 80/327 (24%), Gaps = 28/327 (8%)
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI 411
+S + + L +G L V++ D K LL P L
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV------DLLQSLRYKHP-LLCC 62
Query: 412 SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIH 471
+ DN + + +++ +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDG 122
Query: 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531
++D R + + +N + + L+ ++ +
Sbjct: 123 LIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNS----------QV 172
Query: 532 KFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQK 591
+++ + TI + + SS G V +D+
Sbjct: 173 QWFRLPLCEDDNG--TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
Query: 592 DLQSS----GWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET-VITLWDPD-RNVLVAVI 645
+ + + + + FS L A +I+ W+ R +
Sbjct: 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290
Query: 646 GETLTPIMNMSFVGSSEYLVATSWGSK 672
++ ++ + ++ +
Sbjct: 291 KFNEDSVVKIACSDN---ILCLATSDD 314
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.002
Identities = 31/335 (9%), Positives = 85/335 (25%), Gaps = 45/335 (13%)
Query: 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI------- 159
+ + K ++ + ++P+ S S DG++ + F + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSK-------SLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYK 56
Query: 160 ----DVKFS------------IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSH 203
F ++ L+ P+ + + K
Sbjct: 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLI 116
Query: 204 KKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263
+ + + ++ T+ ++ + + W
Sbjct: 117 AASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFR 176
Query: 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKM 323
+ + + + + V Q A + GR+ + + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 324 NLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLD 383
V+ + FS +LY+ G +G++ W L
Sbjct: 237 AFRCHRLNL---------------KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ 281
Query: 384 TGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQV 418
T KK + + ++ ++ +D+
Sbjct: 282 TRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTF 316
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (95), Expect = 3e-04
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 83 NDVKRLLVCTS-NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141
D ++ + T+ ++ +T + K + V +T +I+S SL
Sbjct: 261 LDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS----LSL 316
Query: 142 DGTIKYWD 149
DGT+ +++
Sbjct: 317 DGTLNFYE 324
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 4e-04
Identities = 35/300 (11%), Positives = 82/300 (27%), Gaps = 34/300 (11%)
Query: 348 TWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPS 407
T H ++ L + L SG +G ++ W + + I S S
Sbjct: 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVS----LDNSKAQE 59
Query: 408 LSSISCADNQVHLLKMPSMEI------------IRSISGIKLPCPLPEEYKGLCRDIAFN 455
SSIS D ++ + + + G
Sbjct: 60 YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL 119
Query: 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMST 515
+ G ++NY + + ++ E + + + +++S + ++
Sbjct: 120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAA 179
Query: 516 VDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY 575
D+ L+ T F S I + A A + S
Sbjct: 180 GDVMGKILLY----DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSL 235
Query: 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWD 635
+ ++ ++ + K + + ++++ A+ I W+
Sbjct: 236 DTNIFIY---------SVKRPM-KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.001
Identities = 33/291 (11%), Positives = 75/291 (25%), Gaps = 29/291 (9%)
Query: 107 ISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIF 166
+ ++ GH +T + V + + S DG I W S + +
Sbjct: 6 LKTISGHNKGITALTV-----------NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN 54
Query: 167 S--------MVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICK 218
S +L E + + D ++ +
Sbjct: 55 SKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDII 114
Query: 219 CNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITL 278
++ + V+L++ + ++ + F + K P + +
Sbjct: 115 KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE 174
Query: 279 HHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP-GV 337
+ V+ + + T R + K E+ G
Sbjct: 175 TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS 234
Query: 338 RDN--------DDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380
D + + H V+ L++ + L S G + + W
Sbjct: 235 LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRW 284
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.9 bits (95), Expect = 5e-04
Identities = 29/248 (11%), Positives = 67/248 (27%), Gaps = 36/248 (14%)
Query: 79 PAFSNDVKRLLVCT---SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSY 135
D++ L T + +++ ST + L+ A + + + + + Y
Sbjct: 24 QMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRL-----SASGR---Y 75
Query: 136 CWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195
+ DG + D + E ++K + R S + +
Sbjct: 76 LFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-------RSIETSKMEGW---------E 119
Query: 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAE---MKEPQVITISSSGKYF-- 250
+ P+ M+G + +S E I S F
Sbjct: 120 DKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 251 GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG 310
+++ K+L+ D+ + + + L + R L+
Sbjct: 180 NVKETGKILLVDYTDLNNLKTT----EISAERFLHDGGLDGSHRYFITAANARNKLVVID 235
Query: 311 FGDRTFAT 318
+
Sbjct: 236 TKEGKLVA 243
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 38.6 bits (89), Expect = 0.002
Identities = 40/263 (15%), Positives = 79/263 (30%), Gaps = 36/263 (13%)
Query: 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI--GSPLLYFTESPDPS--- 407
V + S+ G YL+ G++G + + L + + I GS S
Sbjct: 61 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120
Query: 408 --LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD--IAFNHDGG--LV 461
+ + Q ++ ++E + I + +EY R I +H +V
Sbjct: 121 KYAIAGAYWPPQYVIMDGETLEPKK-IQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179
Query: 462 ALRAENYCIHF-YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKL 520
++ + Y+ L++ +E+ H G D + + A +
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARN---------- 229
Query: 521 AEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580
K V T+ + G A HP ++S+ GD
Sbjct: 230 -----------KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278
Query: 581 VWICNDELQQKDLQSSGWSCHAV 603
V + + + W
Sbjct: 279 VAL--IGTDPEGHPDNAWKILDS 299
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.002
Identities = 45/316 (14%), Positives = 87/316 (27%), Gaps = 23/316 (7%)
Query: 80 AFSNDVKRLLVCTS-NTVSIFSTSTG------LQISSLEGHKAPVTTVIVVPASTPATKI 132
+ N + C+ + ++ + S HK+ + V V+ A
Sbjct: 21 SACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78
Query: 133 LSYCWTASLDGTIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFAY 190
L T S G + ++ + + K + + + S + L
Sbjct: 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 138
Query: 191 LSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYF 250
L D + TT K P + N + T L G V ++ S +
Sbjct: 139 LVATDVKGTTYIWKFHPFADESNSLTLNWSPT-LELQGTVESPMTPSQFATSVDISER-- 195
Query: 251 GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG 310
L+ + + + + + + + + I + L+
Sbjct: 196 ------GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 249
Query: 311 FGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYS 370
+F E + H S V L F+ G L S
Sbjct: 250 HDSNSF---GCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306
Query: 371 GGKEGVLVVWQLDTGK 386
G +G L W + T +
Sbjct: 307 AGWDGKLRFWDVKTKE 322
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 39.0 bits (89), Expect = 0.002
Identities = 29/297 (9%), Positives = 67/297 (22%), Gaps = 36/297 (12%)
Query: 352 HPSEVSVLIFSSDGAYLY-SGGKEGVLVVWQLDTGKKKFL----PRIGSPLLYFTESPDP 406
P +V ++ S D YLY E ++ +++ + L + +
Sbjct: 35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQG 94
Query: 407 SLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE 466
+ + + + + + + +
Sbjct: 95 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL------K 148
Query: 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526
I +++ DD + E G +V + E
Sbjct: 149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVF--------HPNEQYAYCVNELNSS 200
Query: 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICND 586
V G TL + + + P+ R +
Sbjct: 201 VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 260
Query: 587 E----LQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAET--VITLWDPD 637
E L ++ Q + G L A + I++++
Sbjct: 261 EDGSVLSKEGFQPTETQPRGF-----------NVDHSGKYLIAAGQKSHHISVYEIV 306
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 0.002
Identities = 30/269 (11%), Positives = 61/269 (22%), Gaps = 32/269 (11%)
Query: 138 TASLDGTIKYWDFSVPELLKTIDV-KFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDT 196
+ D TIK WD + E + + S+ + + SD
Sbjct: 30 SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLN 89
Query: 197 RETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQR 256
+ + + ++ +V+ + +
Sbjct: 90 TLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK 149
Query: 257 KLLIW------KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRG 310
++ KV + V + K + R+V +G I +W
Sbjct: 150 YIVSASGDRTIKVWNTSTCEFVRT----LNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI 205
Query: 311 FGDRTFATNDNKMNLNLMN-------------------NEEERPGVRDNDDADLCTTWHW 351
+ L + R T
Sbjct: 206 ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265
Query: 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVW 380
H V L F D + S + +++W
Sbjct: 266 HSGRVFRLQF--DEFQIVSSSHDDTILIW 292
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 38.0 bits (87), Expect = 0.004
Identities = 38/371 (10%), Positives = 78/371 (21%), Gaps = 63/371 (16%)
Query: 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT--------- 92
RS I A +G A + S + + +
Sbjct: 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKG 92
Query: 93 --SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVP---ASTPATKILSYCWTASLDGTIKY 147
++ V +F T L I+ +E AP +V + ++ L +
Sbjct: 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLF--FLFGSSAAAG 150
Query: 148 WDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEP 207
+ + + +
Sbjct: 151 LSVPGASDDQLTKSASC------------FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198
Query: 208 RPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVE 267
T A+ Q + G L D+
Sbjct: 199 AGIVG---------------AQCTGAQNCSSQAAQANYPGMLVWAVASSIL----QGDIP 239
Query: 268 AERVVMRKITLHHTKKLTVLAFHPT-QRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLN 326
A M+ + F ++VA T I+I R+ +
Sbjct: 240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS-- 297
Query: 327 LMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY--SGGKEGVLVVWQLDT 384
+ + +I + DGA + VL ++ +
Sbjct: 298 ----------SVTASVGQTSGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346
Query: 385 GKKKFLPRIGS 395
+ + +
Sbjct: 347 DQDQSSVELDK 357
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 762 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.96 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.9 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.86 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.84 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.83 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.72 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.68 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.65 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.64 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.47 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.45 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.41 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.37 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.34 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.33 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.17 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.14 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 99.11 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.07 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 99.06 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.05 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.05 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.97 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.96 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.92 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.84 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.82 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.54 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.21 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 98.16 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 98.12 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 98.09 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 98.06 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 98.02 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 98.01 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.94 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.9 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.89 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.88 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.88 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.83 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.66 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.66 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.61 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.61 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.52 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.38 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 97.23 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.16 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 96.32 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.21 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.43 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.89 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 93.95 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.09 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 91.74 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 89.31 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 88.03 | |
| d1tl2a_ | 235 | Tachylectin-2 {Japanese horseshoe crab (Tachypleus | 87.76 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 86.46 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 85.69 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.9 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-38 Score=316.89 Aligned_cols=284 Identities=14% Similarity=0.194 Sum_probs=240.3
Q ss_pred CcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeC
Q 040987 71 GRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDF 150 (762)
Q Consensus 71 h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~ 150 (762)
+++.+.. ++++|+|+.||++.++.|.+||+++++..+.+.+|...|++++|+|+| .+||+|+.|++|+|||+
T Consensus 16 ~r~~~~~-~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g-------~~latg~~dg~i~iwd~ 87 (311)
T d1nr0a1 16 ARGTAVV-LGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSG-------YYCASGDVHGNVRIWDT 87 (311)
T ss_dssp CTTCCCC-CEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEES
T ss_pred CCCCeEE-EEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCC-------CeEeccccCceEeeeee
Confidence 3445554 999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred CCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCcccccee
Q 040987 151 SVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGV 230 (762)
Q Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~ 230 (762)
.+++..... .
T Consensus 88 ~~~~~~~~~----------------------------------------------------------------------~ 97 (311)
T d1nr0a1 88 TQTTHILKT----------------------------------------------------------------------T 97 (311)
T ss_dssp SSTTCCEEE----------------------------------------------------------------------E
T ss_pred ecccccccc----------------------------------------------------------------------c
Confidence 887643221 2
Q ss_pred eeccCCCceEEEECCCCCEEEEEe---CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE-EEEeecCCeEE
Q 040987 231 TLAEMKEPQVITISSSGKYFGIRK---QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI-VAAGDVTGRIL 306 (762)
Q Consensus 231 ~~~~~~~v~~~~~spdg~~la~~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~dg~v~ 306 (762)
...|...|.+++|+|++++|+++. +..+++|++++++.. ..+.+|...|.+++|+|++++ |++|+.||.|+
T Consensus 98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~-----~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~ 172 (311)
T d1nr0a1 98 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN-----GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVA 172 (311)
T ss_dssp EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBC-----BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEE
T ss_pred cccccCcccccccccccccccccccccccccccccccccccc-----ccccccccccccccccccceeeecccccccccc
Confidence 234677899999999999998653 456899999988765 566789999999999999985 78899999999
Q ss_pred EEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 307 IWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 307 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
+||+++.+ ....+..|...|.++.|+|++++|++++.|+.|++||..++.
T Consensus 173 i~d~~~~~------------------------------~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~ 222 (311)
T d1nr0a1 173 IFEGPPFK------------------------------FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT 222 (311)
T ss_dssp EEETTTBE------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cccccccc------------------------------cccccccccccccccccCcccccccccccccccccccccccc
Confidence 99997664 335677899999999999999999999999999999998876
Q ss_pred eec--------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 387 KKF--------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 387 ~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
... ...|...|.+++|+|++++|++++.|+.|++||++++++++++..+.. .....+.+.+++
T Consensus 223 ~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~---------~~~~~~~~~~~~ 293 (311)
T d1nr0a1 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR---------IEDQQLGIIWTK 293 (311)
T ss_dssp EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSS---------GGGCEEEEEECS
T ss_pred ccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCC---------ccceEEEEEecC
Confidence 532 234678899999999999999999999999999999999999876652 122334455566
Q ss_pred CEEEEeecCceEEEEEcC
Q 040987 459 GLVALRAENYCIHFYSLL 476 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~ 476 (762)
..|++++.||.|++||++
T Consensus 294 ~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 294 QALVSISANGFINFVNPE 311 (311)
T ss_dssp SCEEEEETTCCEEEEETT
T ss_pred CEEEEEECCCEEEEEeCC
Confidence 789999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-38 Score=318.85 Aligned_cols=282 Identities=14% Similarity=0.190 Sum_probs=244.3
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee------ccCCCCCCeEEEEeCCCCCeEEEEecCCcEE
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK------FLPRIGSPLLYFTESPDPSLSSISCADNQVH 419 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~------~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~ 419 (762)
+..+ .|...|.+++|+|+|++|++|+ ||.|++||+.++... ....|...|.+++|+|++++|++++.|+.|+
T Consensus 45 ~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~ 122 (337)
T d1gxra_ 45 INTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred EEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence 3444 6999999999999999999987 799999999876532 2346778899999999999999999999999
Q ss_pred EEEcCC--ceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 420 LLKMPS--MEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 420 i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
+||+.. .+....+..|. ..+..++|+|++.++++++.++.+++|++.+++...... .|
T Consensus 123 iwd~~~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~----~~------ 182 (337)
T d1gxra_ 123 IWDLAAPTPRIKAELTSSA----------PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ----GH------ 182 (337)
T ss_dssp EEECCCC--EEEEEEECSS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC----CC------
T ss_pred ccccccccccccccccccc----------ccccccccccccccccccccccccccccccccccccccc----cc------
Confidence 999875 45556666665 678999999999999999999999999999876544332 22
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...+.+++|++++..+++++ .++.+++||+++++....+ .| ...|.+++|+|++++|++++.|+
T Consensus 183 ~~~v~~l~~s~~~~~~~~~~---------~d~~v~i~d~~~~~~~~~~------~~-~~~i~~l~~~~~~~~l~~~~~d~ 246 (337)
T d1gxra_ 183 TDGASCIDISNDGTKLWTGG---------LDNTVRSWDLREGRQLQQH------DF-TSQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEE------EC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccccc---------ccccccccccccceeeccc------cc-ccceEEEEEcccccccceecccc
Confidence 66799999999999999998 8899999999988765544 35 78999999999999999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMS 656 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~ 656 (762)
.+++||+.++...... .|...|++++|+|+|++|++++ |+.|++||+.+++++..+. |...|.+++
T Consensus 247 ~i~i~d~~~~~~~~~~------------~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~ 313 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQLH------------LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCD 313 (337)
T ss_dssp CEEEEETTSSCEEEEC------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEE
T ss_pred cccccccccccccccc------------ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEE
Confidence 9999999887654433 5788999999999999999998 9999999999999988875 778999999
Q ss_pred EeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 657 FVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 657 ~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|+||+++|++++.|+. |+|||+
T Consensus 314 ~s~d~~~l~t~s~D~~--I~vWdl 335 (337)
T d1gxra_ 314 ISVDDKYIVTGSGDKK--ATVYEV 335 (337)
T ss_dssp ECTTSCEEEEEETTSC--EEEEEE
T ss_pred EeCCCCEEEEEeCCCe--EEEEEE
Confidence 9999999999999998 999996
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.1e-38 Score=317.16 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=249.1
Q ss_pred eeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 230 VTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 230 ~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
....|...|.+++|+|+|++||++.|+.|+|||+.+.............+|.+.|.+++|+||+++|++|+.||.|++||
T Consensus 46 ~~~~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd 125 (337)
T d1gxra_ 46 NTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD 125 (337)
T ss_dssp EEECCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred EECCCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccc
Confidence 34478999999999999999999989999999998776542233334457899999999999999999999999999999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK- 388 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~- 388 (762)
+..... .....+..|...+..++|+|++.++++++.|+.|++|++.+++..
T Consensus 126 ~~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~ 177 (337)
T d1gxra_ 126 LAAPTP----------------------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVR 177 (337)
T ss_dssp CCCC------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred cccccc----------------------------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 865432 234567789999999999999999999999999999999998875
Q ss_pred ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc
Q 040987 389 FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY 468 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 468 (762)
....+...+.+++|++++..+++++.++.+++||+++++.+..+. +. +.|.+++|+|+++++++++.|+
T Consensus 178 ~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~----------~~i~~l~~~~~~~~l~~~~~d~ 246 (337)
T d1gxra_ 178 QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FT----------SQIFSLGYCPTGEWLAVGMESS 246 (337)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS----------SCEEEEEECTTSSEEEEEETTS
T ss_pred cccccccccccccccccccccccccccccccccccccceeecccc-cc----------cceEEEEEcccccccceecccc
Confidence 456678899999999999999999999999999999998887764 22 6889999999999999999999
Q ss_pred eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE
Q 040987 469 CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI 548 (762)
Q Consensus 469 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~ 548 (762)
.+++||+.++..... ..| ...|.+++|+|++++|++++ .|+.|++||..+++....+
T Consensus 247 ~i~i~d~~~~~~~~~-----~~~------~~~i~~v~~s~~g~~l~s~s---------~Dg~i~iwd~~~~~~~~~~--- 303 (337)
T d1gxra_ 247 NVEVLHVNKPDKYQL-----HLH------ESCVLSLKFAYCGKWFVSTG---------KDNLLNAWRTPYGASIFQS--- 303 (337)
T ss_dssp CEEEEETTSSCEEEE-----CCC------SSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTCCEEEEE---
T ss_pred ccccccccccccccc-----ccc------ccccceEEECCCCCEEEEEe---------CCCeEEEEECCCCCEEEEc---
Confidence 999999988764322 122 67799999999999999999 8899999999998876554
Q ss_pred eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 549 VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 549 ~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.| ...|.+++|+|++++|++++.||+|+|||+
T Consensus 304 ---~~-~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 304 ---KE-SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---EC-SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---cC-CCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 36 789999999999999999999999999997
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7e-38 Score=325.05 Aligned_cols=326 Identities=14% Similarity=0.201 Sum_probs=258.8
Q ss_pred EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 297 AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 297 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
+.+..++.+.+|+....+.+. ..+....+|.+.|++++|+|||++|++|+ |+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~--------------------------~~l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~ 84 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREID--------------------------VELHKSLDHTSVVCCVKFSNDGEYLATGC-NKT 84 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEE--------------------------EEEEEEEECSSCCCEEEECTTSSEEEEEC-BSC
T ss_pred cccCCCCcEEEeCCCCCccee--------------------------eeeEeeCCCCCcEEEEEECCCCCEEEEEe-CCe
Confidence 456678889999976554332 11233346999999999999999999986 899
Q ss_pred EEEEecCCCceec-------------------cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCC
Q 040987 377 LVVWQLDTGKKKF-------------------LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKL 437 (762)
Q Consensus 377 i~~wd~~~~~~~~-------------------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~ 437 (762)
|++||+.+++... ...+...|.+++|+|++++|++++.|+.|++|+...++.+..+.+|.
T Consensus 85 i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~- 163 (388)
T d1erja_ 85 TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE- 163 (388)
T ss_dssp EEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS-
T ss_pred EEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccccccc-
Confidence 9999999877532 12345679999999999999999999999999999999999998877
Q ss_pred CCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEe
Q 040987 438 PCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVD 517 (762)
Q Consensus 438 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~ 517 (762)
..|.++++++++..+++++.++.+++||..+.......... ...+....+.+++++|++++
T Consensus 164 ---------~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~ 224 (388)
T d1erja_ 164 ---------QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE----------DGVTTVAVSPGDGKYIAAGS 224 (388)
T ss_dssp ---------SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS----------SCEEEEEECSTTCCEEEEEE
T ss_pred ---------ccccccccccccccccccccceeeeeeeccccccccccccc----------cccccccccCCCCCeEEEEc
Confidence 78999999999999999999999999999887654443321 23344444455889999998
Q ss_pred eeccccCCCceeEEEEEEecCCCceeEEEEE--eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccccc-
Q 040987 518 IKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI--VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQ- 594 (762)
Q Consensus 518 ~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~- 594 (762)
.|+.|++|+..++.....+... ...+| ...|.+++|+|++++|++++.|+.|++||+.++.......
T Consensus 225 ---------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 294 (388)
T d1erja_ 225 ---------LDRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294 (388)
T ss_dssp ---------TTSCEEEEETTTCCEEEEEC------CCC-SSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------
T ss_pred ---------CCCeEEEeecccCccceeeccccccccCC-CCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccc
Confidence 8899999999988876655432 23567 8899999999999999999999999999998776554332
Q ss_pred CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE------eCCCCEEEEE
Q 040987 595 SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF------VGSSEYLVAT 667 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~------s~dg~~l~s~ 667 (762)
.....+......|...|++++|+|+|++|++|+ ||.|++||+.+++++..+.+|.+.|.++++ +||+++|+|+
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~ 374 (388)
T d1erja_ 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATG 374 (388)
T ss_dssp ----CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred ccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEE
Confidence 122234444556889999999999999999998 999999999999999999999999999875 6789999999
Q ss_pred EcCCCCeEEEEECC
Q 040987 668 SWGSKPQLSVWNMS 681 (762)
Q Consensus 668 ~~d~~~~v~vwd~~ 681 (762)
+.||. |++|+++
T Consensus 375 s~Dg~--I~iW~~~ 386 (388)
T d1erja_ 375 SGDCK--ARIWKYK 386 (388)
T ss_dssp ETTSE--EEEEEEE
T ss_pred eCCCE--EEEEeee
Confidence 99998 9999985
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.1e-38 Score=315.64 Aligned_cols=305 Identities=15% Similarity=0.242 Sum_probs=262.4
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
..+.+|.+.|++++|+|++++|++|+.||.|++||+.+++ ++..+.+|..
T Consensus 11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~------------------------------~~~~~~~h~~ 60 (317)
T d1vyhc1 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD------------------------------FERTLKGHTD 60 (317)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC------------------------------CCEEECCCSS
T ss_pred EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC------------------------------EEEEEeCCCC
Confidence 5678999999999999999999999999999999997663 4567889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|.+++|+|++.+++++..++.+..|+....+.. ....+...+.++.++++++.+++++.|+.+++||+.+++....+.
T Consensus 61 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 140 (317)
T d1vyhc1 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 140 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEc
Confidence 9999999999999999999999999998887764 466778899999999999999999999999999999999999998
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
++. ..+.+++|+|++++|++++.|+.|++|+..+++....+... ...+.+++|+|++...
T Consensus 141 ~~~----------~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~----------~~~i~~~~~~~~~~~~ 200 (317)
T d1vyhc1 141 GHR----------EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH----------RHVVECISWAPESSYS 200 (317)
T ss_dssp CCS----------SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC----------SSCEEEEEECCSCGGG
T ss_pred cCC----------CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC----------CCCceEEEEeeccccc
Confidence 877 67899999999999999999999999999988766554322 5668889998887554
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.... ........+..++.++++++.|+.|++||+.+++....+
T Consensus 201 ~~~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~ 243 (317)
T d1vyhc1 201 SISE-------------------------------------ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 243 (317)
T ss_dssp GGGG-------------------------------------CCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeec-------------------------------------cccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence 3332 111122334456788999999999999999988766544
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
..|...|.+++|+|++++|++++ ||.|++||+.+++++..+.+|.++|++++|+||+++|++++.||.
T Consensus 244 -----------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~ 312 (317)
T d1vyhc1 244 -----------VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312 (317)
T ss_dssp -----------ECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred -----------eCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe
Confidence 36789999999999999999998 999999999999999999999999999999999999999999998
Q ss_pred CeEEEEE
Q 040987 673 PQLSVWN 679 (762)
Q Consensus 673 ~~v~vwd 679 (762)
|++||
T Consensus 313 --i~iWd 317 (317)
T d1vyhc1 313 --VKVWE 317 (317)
T ss_dssp --EEEEC
T ss_pred --EEEeC
Confidence 99997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.7e-37 Score=304.77 Aligned_cols=294 Identities=18% Similarity=0.190 Sum_probs=244.0
Q ss_pred eccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEecc
Q 040987 232 LAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~ 311 (762)
..+.+.+..++++|+|+.||.+.++.+.+|++.+.+.. ..+.+|...|++++|+|+|++||+|+.||.|++||+.
T Consensus 14 ~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~-----~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~ 88 (311)
T d1nr0a1 14 RTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDT-----EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTT 88 (311)
T ss_dssp CCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCC-----EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESS
T ss_pred CCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCcee-----EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeee
Confidence 34556677899999999999989999999999988765 6678999999999999999999999999999999997
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC--CeEEEEecCCCcee-
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE--GVLVVWQLDTGKKK- 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d--g~i~~wd~~~~~~~- 388 (762)
+.... ....+..|...|.+++|+|++++|++++.+ ..+++|++++++..
T Consensus 89 ~~~~~----------------------------~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~ 140 (311)
T d1nr0a1 89 QTTHI----------------------------LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140 (311)
T ss_dssp STTCC----------------------------EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCB
T ss_pred ccccc----------------------------cccccccccCccccccccccccccccccccccccccccccccccccc
Confidence 66432 124577899999999999999999998864 56999999988774
Q ss_pred ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC
Q 040987 389 FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN 467 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 467 (762)
.+..|...|.+++|+|++++ +++++.|+.|++||+++++....+..|. ..|.+++|+|+++++++++.|
T Consensus 141 ~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~----------~~i~~v~~~p~~~~l~~~~~d 210 (311)
T d1nr0a1 141 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT----------KFVHSVRYNPDGSLFASTGGD 210 (311)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCS----------SCEEEEEECTTSSEEEEEETT
T ss_pred cccccccccccccccccceeeeccccccccccccccccccccccccccc----------ccccccccCcccccccccccc
Confidence 45667889999999999986 7788899999999999999999998877 789999999999999999999
Q ss_pred ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 468 YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 468 g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
+.+++||..++.....+.... .....|...|.+++|+|++++|++++ .|+.|++||+++++....+..
T Consensus 211 ~~v~~~d~~~~~~~~~~~~~~---~~~~~h~~~V~~~~~s~~~~~l~tgs---------~Dg~v~iwd~~t~~~~~~l~~ 278 (311)
T d1nr0a1 211 GTIVLYNGVDGTKTGVFEDDS---LKNVAHSGSVFGLTWSPDGTKIASAS---------ADKTIKIWNVATLKVEKTIPV 278 (311)
T ss_dssp SCEEEEETTTCCEEEECBCTT---SSSCSSSSCEEEEEECTTSSEEEEEE---------TTSEEEEEETTTTEEEEEEEC
T ss_pred ccccccccccccccccccccc---cccccccccccccccCCCCCEEEEEe---------CCCeEEEEECCCCcEEEEEEC
Confidence 999999999887665543221 12233477899999999999999999 889999999999887666532
Q ss_pred EeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcc
Q 040987 548 IVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICN 585 (762)
Q Consensus 548 ~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~ 585 (762)
|.......+.+.+++..|++++.||.|++||.+
T Consensus 279 -----~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 279 -----GTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp -----CSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred -----CCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 212222333444456689999999999999974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.6e-37 Score=318.83 Aligned_cols=310 Identities=15% Similarity=0.207 Sum_probs=248.5
Q ss_pred EecCCCeEEEEecCCcce-----eeeecCcccccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeec-----------
Q 040987 48 VARSSGLCRTAEYPAVNS-----KMIRGGRSYVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLE----------- 111 (762)
Q Consensus 48 ~~~~~g~i~~~~~~~~~~-----~~~~~h~~~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~----------- 111 (762)
.+..++.+.+|+...... ....+|++.|.| ++|||||++||+|+|+.|+|||+.+++.+.++.
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~-l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~ 111 (388)
T d1erja_ 33 KKQTNDYYILYNPALPREIDVELHKSLDHTSVVCC-VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPEN 111 (388)
T ss_dssp EEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCE-EEECTTSSEEEEECBSCEEEEETTTCCEEEEECC----------
T ss_pred ccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEE-EEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccc
Confidence 355678888998664322 233579999998 999999999999999999999999999887765
Q ss_pred -------CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCC
Q 040987 112 -------GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKP 184 (762)
Q Consensus 112 -------~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 184 (762)
+|...|++++|+|++ .+|++|+.|++|++||...++.+..+.
T Consensus 112 ~~~~~~~~~~~~V~~l~~s~~~-------~~l~s~~~dg~v~i~~~~~~~~~~~~~------------------------ 160 (388)
T d1erja_ 112 LNTSSSPSSDLYIRSVCFSPDG-------KFLATGAEDRLIRIWDIENRKIVMILQ------------------------ 160 (388)
T ss_dssp -------CCCCBEEEEEECTTS-------SEEEEEETTSCEEEEETTTTEEEEEEC------------------------
T ss_pred cccccccCCCCCEEEEEECCCC-------Ccceecccccccccccccccccccccc------------------------
Confidence 456779999999999 789999999999999999887665432
Q ss_pred CceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEc
Q 040987 185 PKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKV 263 (762)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~ 263 (762)
+|...|.++++++++..++. +.++.+++||.
T Consensus 161 ------------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~ 192 (388)
T d1erja_ 161 ------------------------------------------------GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 192 (388)
T ss_dssp ------------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ------------------------------------------------cccccccccccccccccccccccceeeeeeec
Confidence 35677888999999998875 57899999999
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD 342 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (762)
.+.... ... .+.....++.+++ ++++|++++.||.|++|+..++.......
T Consensus 193 ~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~---------------------- 244 (388)
T d1erja_ 193 RTGQCS-----LTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD---------------------- 244 (388)
T ss_dssp TTTEEE-----EEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC----------------------
T ss_pred cccccc-----ccc-ccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeec----------------------
Confidence 987653 333 3344455555555 88999999999999999998775443110
Q ss_pred cccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-------------ccCCCCCCeEEEEeCCCCCeE
Q 040987 343 ADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-------------FLPRIGSPLLYFTESPDPSLS 409 (762)
Q Consensus 343 ~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~l 409 (762)
.......+|...|.+++|+|++++|++++.|+.|++||+.++... ....|...|.+++|+|++++|
T Consensus 245 -~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 323 (388)
T d1erja_ 245 -SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 323 (388)
T ss_dssp -------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEE
T ss_pred -cccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEE
Confidence 112344578999999999999999999999999999999876532 234567789999999999999
Q ss_pred EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE------eCCCCEEEEeecCceEEEEEcC
Q 040987 410 SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF------NHDGGLVALRAENYCIHFYSLL 476 (762)
Q Consensus 410 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~------s~~~~~l~~~~~dg~i~i~d~~ 476 (762)
++++.||.|++||+.+++++..+.+|. +.|.++++ +|++++|++++.||+|++|+++
T Consensus 324 ~sg~~dg~i~vwd~~~~~~~~~l~~H~----------~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 324 LSGSKDRGVLFWDKKSGNPLLMLQGHR----------NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCS----------SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEeCCCEEEEEECCCCcEEEEEeCCC----------CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 999999999999999999999999987 67777764 6789999999999999999984
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.8e-37 Score=307.89 Aligned_cols=292 Identities=15% Similarity=0.220 Sum_probs=252.5
Q ss_pred EecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeE
Q 040987 58 AEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYC 136 (762)
Q Consensus 58 ~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l 136 (762)
|.-...+...+.||++.|.+ ++|+|++++||+|+ |++|+|||++++++++++.+|...|.+++|+|++ .++
T Consensus 3 w~p~~~~~~~L~GH~~~I~~-l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~-------~~~ 74 (317)
T d1vyhc1 3 WIPRPPEKYALSGHRSPVTR-VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG-------KLL 74 (317)
T ss_dssp CCCCSSCSCEEECCSSCEEE-EEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTS-------SEE
T ss_pred cCCCCCccEEEcCCCCCeEE-EEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccc-------ccc
Confidence 54334455678999999998 99999999999999 7999999999999999999999999999999999 688
Q ss_pred EeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccE
Q 040987 137 WTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRI 216 (762)
Q Consensus 137 ~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i 216 (762)
++++.++++.+|+....+....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------------- 96 (317)
T d1vyhc1 75 ASCSADMTIKLWDFQGFECIRT---------------------------------------------------------- 96 (317)
T ss_dssp EEEETTSCCCEEETTSSCEEEC----------------------------------------------------------
T ss_pred cccccccccccccccccccccc----------------------------------------------------------
Confidence 8999999999999877654332
Q ss_pred EEEecCCccccceeeeccCCCceEEEECCCCCEEEE-EeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE
Q 040987 217 CKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGI-RKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI 295 (762)
Q Consensus 217 ~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 295 (762)
...|...+.++.|+|+++.+++ +.|+.+.+||+.+++.. ..+..|...+.+++|+|++++
T Consensus 97 --------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 157 (317)
T d1vyhc1 97 --------------MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV-----KTFTGHREWVRMVRPNQDGTL 157 (317)
T ss_dssp --------------CCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEE-----EEEECCSSCEEEEEECTTSSE
T ss_pred --------------cccccccceeeeccCCCceEEeeccCcceeEeecccceee-----eEEccCCCcceeeecccCCCE
Confidence 2335667788899999999985 57899999999988754 667789999999999999999
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEec------------
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSS------------ 363 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~------------ 363 (762)
|++++.|+.|++|+...++.. ..+.+|...+.++.|+|
T Consensus 158 l~~~~~d~~v~~~~~~~~~~~------------------------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 207 (317)
T d1vyhc1 158 IASCSNDQTVRVWVVATKECK------------------------------AELREHRHVVECISWAPESSYSSISEATG 207 (317)
T ss_dssp EEEEETTSCEEEEETTTCCEE------------------------------EEECCCSSCEEEEEECCSCGGGGGGGCCS
T ss_pred EEEEeCCCeEEEEeeccceee------------------------------EEEecCCCCceEEEEeeccccceeecccc
Confidence 999999999999999776533 34455555666666554
Q ss_pred --------CCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 364 --------DGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 364 --------~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
++..+++++.|+.|++||..+++.. .+..|...|.+++++|++++|++++.||.|++||+.+++++..+.+
T Consensus 208 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred ceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence 3457899999999999999998875 4567888999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
|. +.|.+++|+|++++|++++.||.|++||
T Consensus 288 h~----------~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 288 HE----------HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CS----------SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CC----------CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 87 7899999999999999999999999997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=7.2e-36 Score=303.45 Aligned_cols=291 Identities=13% Similarity=0.187 Sum_probs=246.3
Q ss_pred cceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeec
Q 040987 63 VNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASL 141 (762)
Q Consensus 63 ~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~ 141 (762)
..+.++.||++.|.+ ++|+||+++||+|+ ||.|+|||+.+++.++++.+|...|.+++|+|++ .++++++.
T Consensus 46 ~~~~tL~GH~~~I~~-l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~-------~~l~~~~~ 117 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYA-MHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG-------NYVACGGL 117 (340)
T ss_dssp CEEEEECCCSSCEEE-EEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTS-------SEEEEEET
T ss_pred eeeEEECCCCCCEEE-EEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccc-------eeeeeecc
Confidence 345678999999998 99999999999999 7999999999999999999999999999999999 78999999
Q ss_pred CCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 142 DGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 142 d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
|+++++|+...........
T Consensus 118 d~~i~~~~~~~~~~~~~~~------------------------------------------------------------- 136 (340)
T d1tbga_ 118 DNICSIYNLKTREGNVRVS------------------------------------------------------------- 136 (340)
T ss_dssp TCCEEEEESSSSCSCCCEE-------------------------------------------------------------
T ss_pred cceeecccccccccccccc-------------------------------------------------------------
Confidence 9999999987643221110
Q ss_pred CCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec
Q 040987 222 TESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV 301 (762)
Q Consensus 222 ~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~ 301 (762)
....+|...........+........+.....+........ .....+...+....+.+++.++++++.
T Consensus 137 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (340)
T d1tbga_ 137 -------RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQT-----TTFTGHTGDVMSLSLAPDTRLFVSGAC 204 (340)
T ss_dssp -------EEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEE-----EEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred -------eeccccccccccccccccccccccccccccccccccccccc-----ccccccceeEeeeccccccceeEEeec
Confidence 11122333334444444444455667888888888776543 555677888999999999999999999
Q ss_pred CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEe
Q 040987 302 TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 302 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd 381 (762)
|+.|++||+.+++ ++..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 205 d~~v~i~d~~~~~------------------------------~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~ 254 (340)
T d1tbga_ 205 DASAKLWDVREGM------------------------------CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD 254 (340)
T ss_dssp TTEEEEEETTTTE------------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CceEEEEECCCCc------------------------------EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 9999999997664 3467888999999999999999999999999999999
Q ss_pred cCCCceec---cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 382 LDTGKKKF---LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 382 ~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
+....... ...+...+.+++|+|++++|++++.||.|++||+.+++.+..+.+|. +.|.+++|+|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~----------~~V~~l~~s~d~ 324 (340)
T d1tbga_ 255 LRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD----------NRVSCLGVTDDG 324 (340)
T ss_dssp TTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS----------SCEEEEEECTTS
T ss_pred ecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC----------CCEEEEEEeCCC
Confidence 99887643 34556689999999999999999999999999999999999999987 789999999999
Q ss_pred CEEEEeecCceEEEEE
Q 040987 459 GLVALRAENYCIHFYS 474 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d 474 (762)
++|++++.||.|++||
T Consensus 325 ~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 325 MAVATGSWDSFLKIWN 340 (340)
T ss_dssp SCEEEEETTSCEEEEC
T ss_pred CEEEEEccCCEEEEeC
Confidence 9999999999999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.9e-36 Score=298.10 Aligned_cols=288 Identities=15% Similarity=0.172 Sum_probs=229.8
Q ss_pred eeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 65 SKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 65 ~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
.+.+.||.+.|.+ ++|||||++||+|+ |+.|+|||++++++++.+. +|...|++++|+|++ . +++++.|
T Consensus 5 ~~~~~GH~~~V~~-l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g-------~-~~~~~~d 75 (299)
T d1nr0a2 5 DQVRYGHNKAITA-LSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG-------D-LFTVSWD 75 (299)
T ss_dssp EEEECCCSSCEEE-EEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTS-------C-EEEEETT
T ss_pred ceEcCCCCCCcEE-EEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccc-------e-eecccce
Confidence 4678999999998 99999999999999 7999999999999998884 799999999999999 3 3467789
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
+++++|+........
T Consensus 76 ~~v~~~~~~~~~~~~----------------------------------------------------------------- 90 (299)
T d1nr0a2 76 DHLKVVPAGGSGVDS----------------------------------------------------------------- 90 (299)
T ss_dssp TEEEEECSSSSSSCT-----------------------------------------------------------------
T ss_pred eeEEEeccCCccccc-----------------------------------------------------------------
Confidence 999999976432100
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
.......+...+.+++|+|+|++++++.++.+.+|+..... .. .....+.+++|+|++++|++|+.|
T Consensus 91 ----~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~-------~~--~~~~~~~~~~~s~~~~~l~~g~~d 157 (299)
T d1nr0a2 91 ----SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLT-------EV--PISYNSSCVALSNDKQFVAVGGQD 157 (299)
T ss_dssp ----TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEE-------EE--ECSSCEEEEEECTTSCEEEEEETT
T ss_pred ----ccccccccccccccccccccccccccccccccccccccccc-------cc--cccccccccccccccccccccccc
Confidence 00122335667789999999999999999999999954322 22 234568899999999999999999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~ 382 (762)
|.|++||+.+++... .....|...|.+++|+|++++|++++.|+.|++||+
T Consensus 158 g~i~~~d~~~~~~~~-----------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~ 208 (299)
T d1nr0a2 158 SKVHVYKLSGASVSE-----------------------------VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 208 (299)
T ss_dssp SEEEEEEEETTEEEE-----------------------------EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred ccccccccccccccc-----------------------------cccccccccccccccccccccccccccccccccccc
Confidence 999999987664322 234568899999999999999999999999999999
Q ss_pred CCCcee----ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 383 DTGKKK----FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 383 ~~~~~~----~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
.++... ....|...|.+++|+|++++|++++.|+.|++||+.++.....+..... +...+..+. .+++
T Consensus 209 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~v~~~~-~~~~ 280 (299)
T d1nr0a2 209 ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH-------AMSSVNSVI-WLNE 280 (299)
T ss_dssp GGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS-------TTSCEEEEE-EEET
T ss_pred cccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC-------CCCcEEEEE-ECCC
Confidence 887653 2445778999999999999999999999999999987643332221111 114455554 4567
Q ss_pred CEEEEeecCceEEEEEcC
Q 040987 459 GLVALRAENYCIHFYSLL 476 (762)
Q Consensus 459 ~~l~~~~~dg~i~i~d~~ 476 (762)
++|++++.|+.|++||+.
T Consensus 281 ~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 281 TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TEEEEEETTSCEEEEECC
T ss_pred CEEEEEeCCCEEEEEecc
Confidence 899999999999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-35 Score=304.12 Aligned_cols=314 Identities=18% Similarity=0.166 Sum_probs=238.7
Q ss_pred cccccCCceeecCCCEEEEEe-CCEEEEEEcccce--EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEE
Q 040987 72 RSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGL--QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYW 148 (762)
Q Consensus 72 ~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vW 148 (762)
.++|+| ++|||||++||+++ ++.|+|||+++++ ++..|++|.++|++++|+|++ ++|+|++.|++|+||
T Consensus 7 ~~pIt~-~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~-------~~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 7 VEPISC-HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-------NRIVTCGTDRNAYVW 78 (371)
T ss_dssp SSCCCE-EEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-------TEEEEEETTSCEEEE
T ss_pred CCCeEE-EEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCC-------CEEEEEECCCeEEEE
Confidence 477998 99999999999998 6999999998775 678899999999999999999 689999999999999
Q ss_pred eCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccc
Q 040987 149 DFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAG 228 (762)
Q Consensus 149 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~ 228 (762)
|+.++.....+
T Consensus 79 d~~~~~~~~~~--------------------------------------------------------------------- 89 (371)
T d1k8kc_ 79 TLKGRTWKPTL--------------------------------------------------------------------- 89 (371)
T ss_dssp EEETTEEEEEE---------------------------------------------------------------------
T ss_pred eeccccccccc---------------------------------------------------------------------
Confidence 99876544332
Q ss_pred eeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEE
Q 040987 229 GVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILI 307 (762)
Q Consensus 229 ~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~v 307 (762)
...+|...|.+++|+|++++|+++ .++.+++|++...... .........|...|.+++|+|++++|++|+.|+.|++
T Consensus 90 -~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~-~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v 167 (371)
T d1k8kc_ 90 -VILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW-WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI 167 (371)
T ss_dssp -ECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE-EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred -ccccccccccccccccccccceeecccCcceeeeeeccccc-ccccccccccccccccccccccccceeccccCcEEEE
Confidence 223466788999999999999855 7899999998876542 1223445678899999999999999999999999999
Q ss_pred EeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce
Q 040987 308 WRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK 387 (762)
Q Consensus 308 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~ 387 (762)
|+............. ................+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus 168 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 168 FSAYIKEVEERPAPT------------PWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp EECCCTTTSCCCCCB------------TTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EeeccCccccccccc------------cccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc
Confidence 998654321110000 00011122345566778999999999999999999999999999999999887
Q ss_pred e-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCC------------------------------
Q 040987 388 K-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIK------------------------------ 436 (762)
Q Consensus 388 ~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------------------ 436 (762)
. .+..+..+|.+++|+|+++++++| .|+.+++|..........+....
T Consensus 236 ~~~~~~~~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (371)
T d1k8kc_ 236 VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSA 314 (371)
T ss_dssp EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC------
T ss_pred eeeeecccccceeeeecCCCCEEEEE-cCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccc
Confidence 5 456677899999999999888766 57766665543321111111100
Q ss_pred -CCCCCCCcccCceeeEEEeCCC----CEEEEeecCceEEEEEcCC
Q 040987 437 -LPCPLPEEYKGLCRDIAFNHDG----GLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 437 -~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~i~d~~~ 477 (762)
........|.+.|.++++.+.+ ..+++++.||.|++||+++
T Consensus 315 ~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 315 AAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360 (371)
T ss_dssp ---CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence 0011223477889999998854 3589999999999999864
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.7e-35 Score=295.39 Aligned_cols=289 Identities=17% Similarity=0.250 Sum_probs=244.6
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLK 422 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d 422 (762)
+..++++||.+.|++++|+|++++|++|+.||+|++||+.+++.. .+..|...|.+++|+|+++++++++.|+.+.+|+
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~ 125 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeeccc
Confidence 456789999999999999999999999999999999999998875 4567888999999999999999999999999999
Q ss_pred cCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcc
Q 040987 423 MPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVT 498 (762)
Q Consensus 423 ~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 498 (762)
.... .....+.++. ..... .....+..+.....+.....+.............. .
T Consensus 126 ~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 184 (340)
T d1tbga_ 126 LKTREGNVRVSRELAGHT----------GYLSC-CRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH----------T 184 (340)
T ss_dssp SSSSCSCCCEEEEECCCS----------SCEEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC----------S
T ss_pred ccccccccccceeccccc----------ccccc-ccccccccccccccccccccccccccccccccccc----------c
Confidence 7653 3455555554 33333 33444566777888888888888765443333221 5
Q ss_pred eeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc
Q 040987 499 VVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD 578 (762)
Q Consensus 499 ~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~ 578 (762)
..+....+.+.+.+++++. .++.|++||+.+++....+ .+| ...|++++|+|++++|++++.|+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~---------~d~~v~i~d~~~~~~~~~~-----~~h-~~~i~~v~~~p~~~~l~s~s~d~~ 249 (340)
T d1tbga_ 185 GDVMSLSLAPDTRLFVSGA---------CDASAKLWDVREGMCRQTF-----TGH-ESDINAICFFPNGNAFATGSDDAT 249 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE---------TTTEEEEEETTTTEEEEEE-----CCC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred eeEeeeccccccceeEEee---------cCceEEEEECCCCcEEEEE-----eCC-CCCeEEEEECCCCCEEEEEeCCCe
Confidence 5688899999999999998 8899999999988766554 578 889999999999999999999999
Q ss_pred EEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEE
Q 040987 579 FKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSF 657 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~ 657 (762)
|++||+.......... ...+...|++++|+|++++|++|+ ||.|++||+.+++++..+.+|.++|++++|
T Consensus 250 i~~~~~~~~~~~~~~~---------~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~ 320 (340)
T d1tbga_ 250 CRLFDLRADQELMTYS---------HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320 (340)
T ss_dssp EEEEETTTTEEEEEEC---------CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE
T ss_pred EEEEeecccccccccc---------cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 9999998776554331 234667899999999999999998 999999999999999999999999999999
Q ss_pred eCCCCEEEEEEcCCCCeEEEEE
Q 040987 658 VGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 658 s~dg~~l~s~~~d~~~~v~vwd 679 (762)
+||+++|++++.||. |++||
T Consensus 321 s~d~~~l~s~s~Dg~--v~iWd 340 (340)
T d1tbga_ 321 TDDGMAVATGSWDSF--LKIWN 340 (340)
T ss_dssp CTTSSCEEEEETTSC--EEEEC
T ss_pred eCCCCEEEEEccCCE--EEEeC
Confidence 999999999999998 99997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.8e-35 Score=296.75 Aligned_cols=346 Identities=12% Similarity=0.154 Sum_probs=246.6
Q ss_pred ceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecC
Q 040987 64 NSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLD 142 (762)
Q Consensus 64 ~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d 142 (762)
++.+++||.+.|.. ++++||++||+|+ |++|+|||+.++++++++.+|.+.|++++|+|++ +|++++.|
T Consensus 4 ~~~tL~GH~~~vit--c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~--------~l~s~s~D 73 (355)
T d1nexb2 4 QRTTLRGHMTSVIT--CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG--------ILVSGSTD 73 (355)
T ss_dssp EEEEEECCSSSCEE--EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT--------EEEEEETT
T ss_pred CcEEECCcCCCcEE--EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC--------EEEEEecc
Confidence 56789999998753 2556789999999 7999999999999999999999999999999975 67899999
Q ss_pred CeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecC
Q 040987 143 GTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLT 222 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~ 222 (762)
++|++|++...++........
T Consensus 74 ~~i~iw~~~~~~~~~~~~~~~----------------------------------------------------------- 94 (355)
T d1nexb2 74 RTVRVWDIKKGCCTHVFEGHN----------------------------------------------------------- 94 (355)
T ss_dssp CCEEEEETTTTEEEEEECCCS-----------------------------------------------------------
T ss_pred ccccccccccccccccccccc-----------------------------------------------------------
Confidence 999999998876654432111
Q ss_pred CccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC
Q 040987 223 ESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT 302 (762)
Q Consensus 223 ~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 302 (762)
+........++++++++++++.|
T Consensus 95 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~d 117 (355)
T d1nexb2 95 ---------------------------------------------------------STVRCLDIVEYKNIKYIVTGSRD 117 (355)
T ss_dssp ---------------------------------------------------------SCEEEEEEEEETTEEEEEEEETT
T ss_pred ---------------------------------------------------------ccccccccccccccceeeeecCC
Confidence 00112223344555555555555
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEec
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQL 382 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~ 382 (762)
+.|++|++................... ...............|...+. .+.++++.++++..|+.+++||+
T Consensus 118 ~~i~iw~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~ 188 (355)
T d1nexb2 118 NTLHVWKLPKESSVPDHGEEHDYPLVF-------HTPEENPYFVGVLRGHMASVR--TVSGHGNIVVSGSYDNTLIVWDV 188 (355)
T ss_dssp SEEEEEECCC-----------CCCEEE-------SCTTTCTTEEEEEECCSSCEE--EEEEETTEEEEEETTSCEEEEET
T ss_pred CcEEEEEccCCceeccccccceeccce-------eccccccceeeeeeecccccc--ccccccceeeeecccceeeeeec
Confidence 555555554433221110000000000 000001112233344555554 44567889999999999999999
Q ss_pred CCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEE
Q 040987 383 DTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLV 461 (762)
Q Consensus 383 ~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 461 (762)
.+++... ...+...+.++.+++++..+++++.|+.|++||..++..+..+.+|. ..|.++++++ ++|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~----------~~v~~~~~~~--~~l 256 (355)
T d1nexb2 189 AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHT----------ALVGLLRLSD--KFL 256 (355)
T ss_dssp TTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCS----------SCCCEEEECS--SEE
T ss_pred ccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccccc----------cccccccccc--cee
Confidence 9888754 45567789999999999999999999999999999999999999887 6778888864 689
Q ss_pred EEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE-EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCC
Q 040987 462 ALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT-LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN 540 (762)
Q Consensus 462 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~ 540 (762)
++++.||.|++||+.+........ ...+. ...+++++++++++ .|+.|++||+++++
T Consensus 257 ~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~g----------~d~~i~vwd~~tg~ 314 (355)
T d1nexb2 257 VSAAADGSIRGWDANDYSRKFSYH------------HTNLSAITTFYVSDNILVSG----------SENQFNIYNLRSGK 314 (355)
T ss_dssp EEECTTSEEEEEETTTCCEEEEEE------------CTTCCCCCEEEECSSEEEEE----------ETTEEEEEETTTCC
T ss_pred eeeecccccccccccccceecccc------------cCCceEEEEEcCCCCEEEEE----------eCCEEEEEECCCCC
Confidence 999999999999998775433221 11233 34567788877766 56799999999988
Q ss_pred ceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 541 KEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 541 ~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.+... ..+| ...|.+++|+|+ .++++++.||.++||.+
T Consensus 315 ~~~~~----~~~~-~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 315 LVHAN----ILKD-ADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp BCCSC----TTTT-CSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEE----ecCC-CCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 76432 2578 889999999987 57888899999776654
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-35 Score=293.79 Aligned_cols=295 Identities=13% Similarity=0.103 Sum_probs=234.3
Q ss_pred ceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCC
Q 040987 104 GLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEK 183 (762)
Q Consensus 104 ~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 183 (762)
|++.+.+.||...|++++|+|++ ++|+||+.|++|++||+.++++++.+
T Consensus 2 g~~~~~~~GH~~~V~~l~~s~dg-------~~l~s~s~Dg~v~vWd~~~~~~~~~~------------------------ 50 (299)
T d1nr0a2 2 GSIDQVRYGHNKAITALSSSADG-------KTLFSADAEGHINSWDISTGISNRVF------------------------ 50 (299)
T ss_dssp TEEEEEECCCSSCEEEEEECTTS-------SEEEEEETTSCEEEEETTTCCEEECS------------------------
T ss_pred CccceEcCCCCCCcEEEEECCCC-------CEEEEEcCCCeEEEEECCCCcEEEEE------------------------
Confidence 67889999999999999999999 78999999999999999988765432
Q ss_pred CCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEc
Q 040987 184 PPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKV 263 (762)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~ 263 (762)
...|...|.+++|+|+|++++++.|+.+++|+.
T Consensus 51 -----------------------------------------------~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~ 83 (299)
T d1nr0a2 51 -----------------------------------------------PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPA 83 (299)
T ss_dssp -----------------------------------------------SCSCSSCEEEEEECTTSCEEEEETTTEEEEECS
T ss_pred -----------------------------------------------cCCCCCcEEEEEeeccceeecccceeeEEEecc
Confidence 234677889999999999999999999999998
Q ss_pred cCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCcc
Q 040987 264 PDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDA 343 (762)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (762)
...... ........+...+.+++|+|+++.+++++ ++.+.+|+.....
T Consensus 84 ~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~~----------------------------- 131 (299)
T d1nr0a2 84 GGSGVD--SSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKLT----------------------------- 131 (299)
T ss_dssp SSSSSC--TTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEEE-----------------------------
T ss_pred CCcccc--ccccccccccccccccccccccccccccc-ccccccccccccc-----------------------------
Confidence 765433 22244556788899999999999777664 6689999853211
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.. .....+.+++|+|++++|++++.|+.|++||+++++.. ....|...|.+++|+|++++|++++.++.|++|
T Consensus 132 ---~~--~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~ 206 (299)
T d1nr0a2 132 ---EV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPY 206 (299)
T ss_dssp ---EE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred ---cc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 12345788999999999999999999999999887753 345678899999999999999999999999999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeE
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVV 501 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 501 (762)
|+.++.......... .|...|.+++|+|++++|++++.||.|++||+.++......... .+ +...+
T Consensus 207 ~~~~~~~~~~~~~~~-------~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~--~~-----~~~~v 272 (299)
T d1nr0a2 207 SVANNFELAHTNSWT-------FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG--AH-----AMSSV 272 (299)
T ss_dssp EGGGTTEESCCCCCC-------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT--SS-----TTSCE
T ss_pred ccccccccccccccc-------ccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec--CC-----CCCcE
Confidence 998766554332211 13378999999999999999999999999999887654333221 11 14456
Q ss_pred EEEEEecCCCeEEEEeeeccccCCCceeEEEEEEec
Q 040987 502 TLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSG 537 (762)
Q Consensus 502 ~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~ 537 (762)
.++.+ +++++|++++ .|+.|++||+.
T Consensus 273 ~~~~~-~~~~~l~s~s---------~D~~i~iWdl~ 298 (299)
T d1nr0a2 273 NSVIW-LNETTIVSAG---------QDSNIKFWNVP 298 (299)
T ss_dssp EEEEE-EETTEEEEEE---------TTSCEEEEECC
T ss_pred EEEEE-CCCCEEEEEe---------CCCEEEEEecc
Confidence 66654 5678899998 89999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.2e-35 Score=301.17 Aligned_cols=291 Identities=10% Similarity=0.085 Sum_probs=235.3
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII 429 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~ 429 (762)
..+|++++|+|||++|++++.|+.|++||..+++. ..+.+|..+|.+++|+|++++|++++.|+.|++||+.++...
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~ 86 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK 86 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence 46799999999999999999999999999988764 235678999999999999999999999999999999887655
Q ss_pred EEE--ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe
Q 040987 430 RSI--SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS 507 (762)
Q Consensus 430 ~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 507 (762)
..+ .++. ..+.+++|+|+++.+++++.|+.+++|++...............| ...|.+++|+
T Consensus 87 ~~~~~~~~~----------~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~------~~~v~~v~~~ 150 (371)
T d1k8kc_ 87 PTLVILRIN----------RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------RSTVLSLDWH 150 (371)
T ss_dssp EEEECCCCS----------SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------CSCEEEEEEC
T ss_pred ccccccccc----------ccccccccccccccceeecccCcceeeeeeccccccccccccccc------cccccccccc
Confidence 443 4444 689999999999999999999999999998877665555544444 6779999999
Q ss_pred cCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE-------------EEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 508 QDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT-------------LSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 508 p~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
|++++|++++ .|+.+++|+......... .......+| ...|.+++|+|++++|++++
T Consensus 151 p~~~~l~s~s---------~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~g~~l~s~~ 220 (371)
T d1k8kc_ 151 PNSVLLAAGS---------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS-CGWVHGVCFSANGSRVAWVS 220 (371)
T ss_dssp TTSSEEEEEE---------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC-SSCEEEEEECSSSSEEEEEE
T ss_pred ccccceeccc---------cCcEEEEEeeccCccccccccccccccccceeeeeeccCc-cCcEEEEEeecccccccccc
Confidence 9999999999 899999999875432110 011123567 88999999999999999999
Q ss_pred CCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC--CCeEEEE--------
Q 040987 575 YGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD--RNVLVAV-------- 644 (762)
Q Consensus 575 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~--~~~~~~~-------- 644 (762)
.|+.|++||+.++.....+ ..|..+|.+++|+||+++|++|.|+.+++|..+ .+.....
T Consensus 221 ~d~~i~iwd~~~~~~~~~~-----------~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (371)
T d1k8kc_ 221 HDSTVCLADADKKMAVATL-----------ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQ 289 (371)
T ss_dssp TTTEEEEEEGGGTTEEEEE-----------ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred cCCcceEEeeecccceeee-----------ecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccc
Confidence 9999999999887665544 357889999999999999999888776665432 2221100
Q ss_pred -------------------------------eccccCceeEEEEeCCC----CEEEEEEcCCCCeEEEEECCC
Q 040987 645 -------------------------------IGETLTPIMNMSFVGSS----EYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 645 -------------------------------l~~~~~~v~~~~~s~dg----~~l~s~~~d~~~~v~vwd~~~ 682 (762)
...|.+.|+++++.+++ ..++|+|.||. |++||+++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~--v~iW~~~~ 360 (371)
T d1k8kc_ 290 SSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG--MSIWDVRS 360 (371)
T ss_dssp ------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE--EEEEEHHH
T ss_pred cccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe--EEEEeCCc
Confidence 01378889999998854 36899999998 99999865
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=8e-35 Score=297.43 Aligned_cols=332 Identities=16% Similarity=0.204 Sum_probs=251.7
Q ss_pred eeeeeeccCcCe-EEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 273 MRKITLHHTKKL-TVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 273 ~~~~~~~~~~~v-~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
.+..+.+|...| +|++| ++++||+|+.||.|++||+.+++ ++..+.+
T Consensus 4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~------------------------------~~~~l~~ 51 (355)
T d1nexb2 4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKK------------------------------FLLQLSG 51 (355)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTE------------------------------EEEEEEC
T ss_pred CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCc------------------------------EEEEEEC
Confidence 346678998886 55555 67899999999999999997764 4568899
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC---CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP---RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI 428 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~ 428 (762)
|.+.|.+++|+|+ .+|++++.|++|++|+....+..... ..........+++++..+++++.|+.|++||+.+...
T Consensus 52 H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~ 130 (355)
T d1nexb2 52 HDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130 (355)
T ss_dssp CSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC---
T ss_pred CCCCEEEEEEcCC-CEEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce
Confidence 9999999999986 58999999999999999988764322 2233455667789999999999999999999987655
Q ss_pred EEEEccCCCCCC---CCCc--------ccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCc
Q 040987 429 IRSISGIKLPCP---LPEE--------YKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDV 497 (762)
Q Consensus 429 ~~~~~~~~~~~~---~~~~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 497 (762)
............ .... .........+.+++++++.+..|+.+++||+.+++.+......
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~---------- 200 (355)
T d1nexb2 131 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH---------- 200 (355)
T ss_dssp --------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC----------
T ss_pred eccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecc----------
Confidence 433221110000 0000 0001122355677889999999999999999987655443321
Q ss_pred ceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 498 TVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 498 ~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
...+.++.|+|+++++++++ .|+.|++||..++.....+ .+| ...|.++++++ ++|++++.||
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~-----~~h-~~~v~~~~~~~--~~l~~~~~dg 263 (355)
T d1nexb2 201 TDRIYSTIYDHERKRCISAS---------MDTTIRIWDLENGELMYTL-----QGH-TALVGLLRLSD--KFLVSAAADG 263 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEE---------TTSCEEEEETTTCCEEEEE-----CCC-SSCCCEEEECS--SEEEEECTTS
T ss_pred ccccccccccccceeeeccc---------ccceEEeeecccccccccc-----ccc-ccccccccccc--ceeeeeeccc
Confidence 55688999999999999999 8899999999998776655 678 88999999974 6999999999
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEE-EEEcCCCcEEEEEcCCeEEEEeCCCCeEEE-EeccccCceeEE
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTA-AAFSADGSVLAVAAETVITLWDPDRNVLVA-VIGETLTPIMNM 655 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~s~dg~~la~~~d~~i~iwd~~~~~~~~-~l~~~~~~v~~~ 655 (762)
.|++||+.+....... |...+.+ ..+++++++|++|+|+.|+|||+++++++. .+.+|.++|.++
T Consensus 264 ~i~iwd~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v 330 (355)
T d1nexb2 264 SIRGWDANDYSRKFSY-------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330 (355)
T ss_dssp EEEEEETTTCCEEEEE-------------ECTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEE
T ss_pred ccccccccccceeccc-------------ccCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEE
Confidence 9999999876543322 3444444 456889999888889999999999999885 567899999999
Q ss_pred EEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 656 SFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 656 ~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
+|+|+ .++++++.||. ++||.+
T Consensus 331 ~~~~~-~~~~~~s~dg~--~~l~~~ 352 (355)
T d1nexb2 331 NFKGK-TLVAAVEKDGQ--SFLEIL 352 (355)
T ss_dssp EEETT-EEEEEEESSSC--EEEEEE
T ss_pred EEcCC-eEEEEEECCCc--EEEEEE
Confidence 99997 57888899998 776643
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7e-33 Score=281.21 Aligned_cols=322 Identities=15% Similarity=0.200 Sum_probs=251.8
Q ss_pred eeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccc
Q 040987 275 KITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS 354 (762)
Q Consensus 275 ~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 354 (762)
+.+.+|.+.|.+ +++++|++||+|+.||.|+|||+.+++ ++..+.+|..
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~------------------------------~~~~~~~h~~ 58 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGK------------------------------CLRTLVGHTG 58 (342)
T ss_dssp EEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCC------------------------------EEEECCCCSS
T ss_pred EEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCC------------------------------EEEEEeCCCC
Confidence 678899999865 467789999999999999999997764 4467889999
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC-CCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEc
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.|.+++|+++ +|++++.|+.+++|+.......... .....+..... ....+..+..++.+.+|+..+++....+.
T Consensus 59 ~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~ 134 (342)
T d2ovrb2 59 GVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL--HEKRVVSGSRDATLRVWDIETGQCLHVLM 134 (342)
T ss_dssp CEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEESSSCCEEEEEE
T ss_pred CEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeec--ccccccccccceeEEEeecccccceeeee
Confidence 9999999874 8999999999999999887765433 33334444433 34577788899999999999988877766
Q ss_pred cCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 434 GIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 434 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
... .......+....++.++.++.+++||......+..+.. | . .....+++++.++
T Consensus 135 ~~~------------~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~----~------~--~~~~~~~~~~~~l 190 (342)
T d2ovrb2 135 GHV------------AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG----H------T--NRVYSLQFDGIHV 190 (342)
T ss_dssp CCS------------SCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC----C------S--SCEEEEEECSSEE
T ss_pred ccc------------ccceeeccccceeeeecCCCeEEEeecccceeeEEEcC----c------c--cccccccCCCCEE
Confidence 543 12344556677899999999999999987765544322 1 2 2344566789999
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
++++ .|+.|++||++.++....+ .+| ...+.++++++ ++|++++.|+.|++||+...+....+
T Consensus 191 ~s~~---------~dg~i~~~d~~~~~~~~~~-----~~~-~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~ 253 (342)
T d2ovrb2 191 VSGS---------LDTSIRVWDVETGNCIHTL-----TGH-QSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTL 253 (342)
T ss_dssp EEEE---------TTSCEEEEETTTCCEEEEE-----CCC-CSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred EEEe---------CCCeEEEeecccceeeeEe-----ccc-ccceeEEecCC--CEEEEEcCCCEEEEEecccccccccc
Confidence 9999 8999999999988766554 577 77888877764 69999999999999999877655443
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEec-----cccCceeEEEEeCCCCEEEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIG-----ETLTPIMNMSFVGSSEYLVAT 667 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~-----~~~~~v~~~~~s~dg~~l~s~ 667 (762)
. ....|...+.++.+ +++++++|+ ||.|++||+++++++..+. +|...|++++|+|++.+|+++
T Consensus 254 ~--------~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g 323 (342)
T d2ovrb2 254 Q--------GPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 323 (342)
T ss_dssp C--------STTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred c--------ccceeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEE
Confidence 1 12235566666666 456999998 9999999999999988763 577789999999999999999
Q ss_pred EcCCC--CeEEEEECCC
Q 040987 668 SWGSK--PQLSVWNMSK 682 (762)
Q Consensus 668 ~~d~~--~~v~vwd~~~ 682 (762)
+.||+ ..|++||.+.
T Consensus 324 ~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 324 SRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CSSSSSCCEEEEEECCC
T ss_pred eCCCCCeeEEEEEeCCC
Confidence 99983 3589999863
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.8e-32 Score=274.97 Aligned_cols=334 Identities=15% Similarity=0.177 Sum_probs=254.4
Q ss_pred EEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCc
Q 040987 99 FSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPA 178 (762)
Q Consensus 99 wd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 178 (762)
|+..+.++.+.|+||.+.|.+ +++++| .+||||+.|++|+|||+.++++++++.
T Consensus 1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g-------~~l~sgs~Dg~i~vWd~~~~~~~~~~~------------------ 54 (342)
T d2ovrb2 1 WRRGELKSPKVLKGHDDHVIT-CLQFCG-------NRIVSGSDDNTLKVWSAVTGKCLRTLV------------------ 54 (342)
T ss_dssp HHHSCCCCCEEEECSTTSCEE-EEEEET-------TEEEEEETTSCEEEEETTTCCEEEECC------------------
T ss_pred CCCCCCCcCEEECCcCCceEE-EEEECC-------CEEEEEeCCCeEEEEECCCCCEEEEEe------------------
Confidence 566667788899999999865 467788 688999999999999999998776554
Q ss_pred ccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE-EEeCCe
Q 040987 179 QSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG-IRKQRK 257 (762)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la-~~~~~~ 257 (762)
+|...|.+++|+|+ +|+ ++.|+.
T Consensus 55 ------------------------------------------------------~h~~~V~~v~~~~~--~l~s~s~D~~ 78 (342)
T d2ovrb2 55 ------------------------------------------------------GHTGGVWSSQMRDN--IIISGSTDRT 78 (342)
T ss_dssp ------------------------------------------------------CCSSCEEEEEEETT--EEEEEETTSC
T ss_pred ------------------------------------------------------CCCCCEEEEEeCCC--ccccceeccc
Confidence 35667778888875 666 557999
Q ss_pred EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCc
Q 040987 258 LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGV 337 (762)
Q Consensus 258 i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (762)
+++|+....... .....+...+...... ...++.+..|+.+.+|+..+++...
T Consensus 79 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~-------------------- 131 (342)
T d2ovrb2 79 LKVWNAETGECI-----HTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLH-------------------- 131 (342)
T ss_dssp EEEEETTTTEEE-----EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEE--------------------
T ss_pred ccccccccccce-----ecccccceeEeeeecc--cccccccccceeEEEeeccccccee--------------------
Confidence 999999877643 3333445555555544 4467788899999999987764332
Q ss_pred ccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec-cCCCCCCeEEEEeCCCCCeEEEEecCC
Q 040987 338 RDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPDPSLSSISCADN 416 (762)
Q Consensus 338 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~ 416 (762)
.+..+.. ......+....++.++.|+.+++||....+... +..+...+..+ ++++.++++++.|+
T Consensus 132 ----------~~~~~~~--~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~~~dg 197 (342)
T d2ovrb2 132 ----------VLMGHVA--AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLDT 197 (342)
T ss_dssp ----------EEECCSS--CEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--EECSSEEEEEETTS
T ss_pred ----------eeecccc--cceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--cCCCCEEEEEeCCC
Confidence 2222222 223445566788999999999999998877643 44555555444 45788999999999
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.|++||++.++.+..+.+|. ..+.+++++ +++|++++.|+.|++||+...+....+... . .
T Consensus 198 ~i~~~d~~~~~~~~~~~~~~----------~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~-~------~ 258 (342)
T d2ovrb2 198 SIRVWDVETGNCIHTLTGHQ----------SLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGP-N------K 258 (342)
T ss_dssp CEEEEETTTCCEEEEECCCC----------SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECST-T------S
T ss_pred eEEEeecccceeeeEecccc----------cceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccc-c------e
Confidence 99999999999999998877 567776665 469999999999999999887665444321 1 1
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG 576 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d 576 (762)
|...+.++.+ +++++++++ .|+.|++||+++++.+..+......+| ...|++++|+|++.+|++|+.|
T Consensus 259 ~~~~~~~~~~--~~~~~~s~s---------~Dg~i~iwd~~tg~~i~~~~~~~~~~~-~~~v~~v~~s~~~~~la~g~~d 326 (342)
T d2ovrb2 259 HQSAVTCLQF--NKNFVITSS---------DDGTVKLWDLKTGEFIRNLVTLESGGS-GGVVWRIRASNTKLVCAVGSRN 326 (342)
T ss_dssp CSSCEEEEEE--CSSEEEEEE---------TTSEEEEEETTTCCEEEEEEECTTGGG-TCEEEEEEECSSEEEEEEECSS
T ss_pred eeeceeeccc--CCCeeEEEc---------CCCEEEEEECCCCCEEEEEecccCCCC-CCCEEEEEECCCCCEEEEEeCC
Confidence 2455666655 567999998 899999999999998887765444567 7889999999999999999999
Q ss_pred Cc----EEEEEccc
Q 040987 577 GD----FKVWICND 586 (762)
Q Consensus 577 g~----i~iwd~~~ 586 (762)
|+ |++||++.
T Consensus 327 Gt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 327 GTEETKLLVLDFDV 340 (342)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCeeEEEEEeCCC
Confidence 86 99999863
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=7.5e-32 Score=270.89 Aligned_cols=290 Identities=13% Similarity=0.159 Sum_probs=221.9
Q ss_pred cccCCceeecCCCEEEEEeCCE--EEEEEcccc--eEEeeecCCc-cceeEEEEeC--CCCcccceeeeEEeeecCCeEE
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNT--VSIFSTSTG--LQISSLEGHK-APVTTVIVVP--ASTPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~--i~iwd~~~~--~~~~~l~~h~-~~V~~v~~s~--~~~~~~~l~~~l~s~s~d~~i~ 146 (762)
.+++ ++|+|+|+.||++++.. |+.||.... ..+..+.+|. ..|++++|+| ++ .+|+||+.||+|+
T Consensus 19 ~~t~-l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g-------~~lasgs~Dg~i~ 90 (325)
T d1pgua1 19 FTTH-LSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS-------QYLCSGDESGKVI 90 (325)
T ss_dssp CCCC-CEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTC-------CEEEEEETTSEEE
T ss_pred CeEE-EEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCC-------CEEEEEeCCCCEE
Confidence 4555 99999999999998654 455654433 4567788875 6799999998 45 5889999999999
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
|||+..++....+..+..
T Consensus 91 iWd~~~~~~~~~~~~~~~-------------------------------------------------------------- 108 (325)
T d1pgua1 91 VWGWTFDKESNSVEVNVK-------------------------------------------------------------- 108 (325)
T ss_dssp EEEEEEEGGGTEEEEEEE--------------------------------------------------------------
T ss_pred EeeecCCcceeeeecccc--------------------------------------------------------------
Confidence 999887665444332210
Q ss_pred cceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcE-EEEeecC
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRI-VAAGDVT 302 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~-l~~~~~d 302 (762)
.....|.+.|.+++|+|++++|+++ .++.+.+|+..+++.. ..+.+|...|.+++|+|++++ +++++.|
T Consensus 109 --~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~~d 181 (325)
T d1pgua1 109 --SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSL-----GEVSGHSQRINACHLKQSRPMRSMTVGDD 181 (325)
T ss_dssp --EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEE-----EECCSCSSCEEEEEECSSSSCEEEEEETT
T ss_pred --cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccc-----eeeeecccccccccccccccceEEEeecc
Confidence 1233467889999999999999754 3678999999988754 566789999999999998875 6789999
Q ss_pred CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC-CCEEEEEecCCeEEEEe
Q 040987 303 GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD-GAYLYSGGKEGVLVVWQ 381 (762)
Q Consensus 303 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~dg~i~~wd 381 (762)
+.+++|+....+... .......|...|.+++|+|+ +.+|++++.|+.|++||
T Consensus 182 ~~v~~~d~~~~~~~~---------------------------~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd 234 (325)
T d1pgua1 182 GSVVFYQGPPFKFSA---------------------------SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD 234 (325)
T ss_dssp TEEEEEETTTBEEEE---------------------------EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred cccccccccccccce---------------------------ecccccCCCCccEEeeeccccceeccccccccceeeee
Confidence 999999986654332 12345678889999999996 68899999999999999
Q ss_pred cCCCceec-cCCCCCCeEEEEeC---CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC
Q 040987 382 LDTGKKKF-LPRIGSPLLYFTES---PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD 457 (762)
Q Consensus 382 ~~~~~~~~-~~~~~~~v~~~~~s---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 457 (762)
+++++... +..|..++..+.|+ +++++|++++.|+.|+|||+++++++..+..+... ..+..+++.+.
T Consensus 235 ~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 306 (325)
T d1pgua1 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ--------LGNQQVGVVAT 306 (325)
T ss_dssp TTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC--------GGGCEEEEEEE
T ss_pred eccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCc--------ccCeEEEEEEC
Confidence 99998753 44455555444443 68999999999999999999999999988776532 23334444432
Q ss_pred -CCEEEEeecCceEEEEEc
Q 040987 458 -GGLVALRAENYCIHFYSL 475 (762)
Q Consensus 458 -~~~l~~~~~dg~i~i~d~ 475 (762)
+.+|++++.||.|++||+
T Consensus 307 ~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 307 GNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ETTEEEEEETTSCEEEEET
T ss_pred CCCEEEEEECCCEEEEEEC
Confidence 347899999999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=2.1e-30 Score=260.25 Aligned_cols=300 Identities=13% Similarity=0.168 Sum_probs=220.0
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeecc-CcCeEEEEEcC--CCcEEEEeecCCeEEEEecc
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHH-TKKLTVLAFHP--TQRIVAAGDVTGRILIWRGF 311 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp--~~~~l~~~~~dg~v~vw~~~ 311 (762)
...+.+++|+|+|+.||.+.+..+.++.+.......... ....+| ...|++++|+| ++++||+|+.||+|++||+.
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~-~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~ 95 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPV-VQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWT 95 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSE-EEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccce-EEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeec
Confidence 345678999999999998776665555544333221122 333455 56899999998 66899999999999999986
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec--CCeEEEEecCCCcee-
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK--EGVLVVWQLDTGKKK- 388 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--dg~i~~wd~~~~~~~- 388 (762)
.++..... .......+..|.++|.+++|+++++++++++. ++.+.+|+.++++..
T Consensus 96 ~~~~~~~~----------------------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 96 FDKESNSV----------------------EVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp EEGGGTEE----------------------EEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCcceeee----------------------ecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccce
Confidence 55322110 00112345668889999999999999987764 577999999988875
Q ss_pred ccCCCCCCeEEEEeCCCCCe-EEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-CCEEEEeec
Q 040987 389 FLPRIGSPLLYFTESPDPSL-SSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-GGLVALRAE 466 (762)
Q Consensus 389 ~~~~~~~~v~~~~~s~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 466 (762)
.+..|...+.+++|+|++.+ +++++.|+.+++||...++....+..+.. +...|.+++|+|+ +.++++++.
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~-------~~~~v~~v~~~pd~~~~l~s~~~ 226 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK-------QGSFVRDVEFSPDSGEFVITVGS 226 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC-------TTCCEEEEEECSTTCCEEEEEET
T ss_pred eeeecccccccccccccccceEEEeecccccccccccccccceecccccC-------CCCccEEeeeccccceecccccc
Confidence 45668889999999999876 66788999999999999888777665442 3378999999996 688999999
Q ss_pred CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 467 NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 467 dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
|+.|++||+++++.+..+......+ ...+.++.+ |||++|++++ .|+.|++||+++++.+..+.
T Consensus 227 d~~i~iwd~~~~~~~~~l~~~~~~v------~~~~~s~~~-~dg~~l~s~s---------~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 227 DRKISCFDGKSGEFLKYIEDDQEPV------QGGIFALSW-LDSQKFATVG---------ADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp TCCEEEEETTTCCEEEECCBTTBCC------CSCEEEEEE-SSSSEEEEEE---------TTSEEEEEETTTTEEEEEEE
T ss_pred ccceeeeeecccccccccccccccc------ccceeeeec-cCCCEEEEEe---------CCCeEEEEECCCCCEEEEEE
Confidence 9999999999887766554321111 222344433 6899999999 89999999999987665543
Q ss_pred EEeecCCCCCceEEEEEcCC-CCeEEEEeCCCcEEEEEc
Q 040987 547 TIVYEPHRDAGISAVAFHPN-RRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd-~~~l~~~~~dg~i~iwd~ 584 (762)
...| ...+..+++.+. +.+|++++.||.|++||+
T Consensus 291 ---~~~~-~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 291 ---LDKQ-QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp ---CCTT-CGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred ---ecCC-cccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 2334 333444444432 347899999999999996
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=7.6e-31 Score=268.46 Aligned_cols=317 Identities=7% Similarity=-0.026 Sum_probs=234.3
Q ss_pred ceeec-CCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC--eEEEEeCCCcce
Q 040987 79 PAFSN-DVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG--TIKYWDFSVPEL 155 (762)
Q Consensus 79 ~~~s~-dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~--~i~vWd~~~~~~ 155 (762)
..||| ||+++|+++++.|+|||++++..++. +|...|.+++|+||| ++|++++.+. .|++||+.+++.
T Consensus 8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg-------~~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDT-------KVAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEECGGGCEEEEETTEEEEECTTSSBEEEC--SCCSCEEEEEECSSS-------EEEEEEEETTEEEEEEEETTTCCE
T ss_pred ccccCCCCCEEEEEECCeEEEEECCCCcEEEc--cCCCCEEEEEECCCC-------CEEEEEEcCCCCEEEEEECCCCcE
Confidence 67999 99999999999999999988877663 699999999999999 6777666553 678888765442
Q ss_pred EEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccC
Q 040987 156 LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEM 235 (762)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~ 235 (762)
T Consensus 79 -------------------------------------------------------------------------------- 78 (360)
T d1k32a3 79 -------------------------------------------------------------------------------- 78 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 236 KEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 236 ~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.....|...|.+++|+||+++|++++.++.+++|++.+++.
T Consensus 79 ---------------------------------------~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 119 (360)
T d1k32a3 79 ---------------------------------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119 (360)
T ss_dssp ---------------------------------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred ---------------------------------------EEeeCCCceEEeeeecccccccceeccccccccccccccce
Confidence 12235677889999999999999999999999999877643
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe----------cCCeEEEEecCCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG----------KEGVLVVWQLDTG 385 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----------~dg~i~~wd~~~~ 385 (762)
...+..|...+.+++|+|||++|+.+. .++.+++||..++
T Consensus 120 ------------------------------~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~ 169 (360)
T d1k32a3 120 ------------------------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 169 (360)
T ss_dssp ------------------------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred ------------------------------eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccC
Confidence 356677888899999999999998653 3457999999999
Q ss_pred ceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEE-------EEEccCCCCCCCCCcccCceeeEEEeCCC
Q 040987 386 KKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEII-------RSISGIKLPCPLPEEYKGLCRDIAFNHDG 458 (762)
Q Consensus 386 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 458 (762)
+......+...+..++|+|||++|++++.++.+.+|+....... ..+..+. ..+..+.+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~s~~~ 239 (360)
T d1k32a3 170 KIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP----------GSPNPTKLVPRS 239 (360)
T ss_dssp EEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST----------TCCCGGGCCCGG
T ss_pred ceeeecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc----------CccccceECCCc
Confidence 88888888888999999999999999999999999997654322 2222222 344556677777
Q ss_pred CEEEEeecC-----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC---CCeEEEEeeeccccCCCceeE
Q 040987 459 GLVALRAEN-----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD---GSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 459 ~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---g~~l~~~~~~~~~~~~~~d~~ 530 (762)
..++.+..+ ..+..++...+.. ..+... ...+..+.+.+. +.++++++ .++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 299 (360)
T d1k32a3 240 MTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPL----------ESSILIYSVPVHGEFAAYYQGAP---------EKGV 299 (360)
T ss_dssp GSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEEC----------SSEEEEEECCCCCSHHHHHHCCC---------CCEE
T ss_pred CcccccceeecccccceeecccCcCce-eEeeec----------CCCceEEEEEecCCCeeEEEecC---------CCCE
Confidence 666554332 1233333333221 111111 222333444333 34556665 7899
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccc
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
+++||+.+++.. . | .+.|.+++|||||++|++++.||.|++||++.++....+
T Consensus 300 i~~~d~~~~~~~-~--------~-~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~~~ 352 (360)
T d1k32a3 300 LLKYDVKTRKVT-E--------V-KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTV 352 (360)
T ss_dssp EEEEETTTCCEE-E--------E-EEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCEEC
T ss_pred EEEEECCCCeEE-E--------e-cCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcceEE
Confidence 999999886532 1 2 456899999999999999999999999999988766554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.9e-30 Score=256.15 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=217.4
Q ss_pred ccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEc
Q 040987 344 DLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKM 423 (762)
Q Consensus 344 ~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~ 423 (762)
++++++++|..+|++++|+| |++|+.||+|++||+.++. ..|...|.++.+++++ .+++++.|+.+++|+.
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~----~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~ 74 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGI 74 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE----CCCCSCEEEEECCSTT-CCEEEETTTEEEETTE
T ss_pred ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC----CCCCCCEEEEEecCCC-eEEEEeeccccccccc
Confidence 56789999999999999987 9999999999999988654 4678899999998765 5688889999999987
Q ss_pred CCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 424 PSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
...+ +. ..+..+++++++..++++ .++.+.+|+..++.....+... . ..
T Consensus 75 ~~~~----~~-------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~--~~ 123 (287)
T d1pgua2 75 TKHE----FG-------------SQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSVRLN-----------S--PG 123 (287)
T ss_dssp EEEE----CS-------------SCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEEECS-----------S--CE
T ss_pred cccc----cc-------------cceeeeeeccCCceEEEe-ecccceeeeccceeeeeecccc-----------c--ee
Confidence 5321 11 355778888888777765 4556889999888766655331 1 23
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
.++++++..+++++. .++.+++|++........+ ...| ...+++++|+|++++|++++.||.|++||
T Consensus 124 ~~~~~~~~~~~v~~~--------~~~~v~~~~~~~~~~~~~~----~~~~-~~~v~~~~~s~~~~~l~~g~~dg~i~i~d 190 (287)
T d1pgua2 124 SAVSLSQNYVAVGLE--------EGNTIQVFKLSDLEVSFDL----KTPL-RAKPSYISISPSETYIAAGDVMGKILLYD 190 (287)
T ss_dssp EEEEECSSEEEEEET--------TTSCEEEEETTEEEEEEEC----SSCC-SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeeeccCcceeeecc--------ccceeeeeeccccceeeee----eecc-CCceeEEEeccCcccccccccccccccee
Confidence 467888888888872 3457999998755443332 2346 77899999999999999999999999999
Q ss_pred cccccccccccCCceeeeeecccCCCCeEEEEEcCC----------CcEEEEEc-CCeEEEEeCCC-CeEEEEeccccCc
Q 040987 584 CNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSAD----------GSVLAVAA-ETVITLWDPDR-NVLVAVIGETLTP 651 (762)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~d----------g~~la~~~-d~~i~iwd~~~-~~~~~~l~~~~~~ 651 (762)
+.++...... ...|...|.+++|+|+ +.+|++|+ |++|+|||+++ ++++..+.+|...
T Consensus 191 ~~~~~~~~~~----------~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~ 260 (287)
T d1pgua2 191 LQSREVKTSR----------WAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG 260 (287)
T ss_dssp TTTTEEEECC----------SCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC
T ss_pred eccccccccc----------ccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC
Confidence 9887654332 3468899999999875 46899998 99999999976 5678888899999
Q ss_pred eeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 652 IMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 652 v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
|++++|+|++ .|++++.|+. |++|++
T Consensus 261 V~~v~~~~~~-~l~s~g~D~~--v~iW~i 286 (287)
T d1pgua2 261 VNNLLWETPS-TLVSSGADAC--IKRWNV 286 (287)
T ss_dssp EEEEEEEETT-EEEEEETTSC--EEEEEE
T ss_pred eEEEEECCCC-EEEEEECCCe--EEEEEE
Confidence 9999999986 6899999998 999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.3e-30 Score=265.02 Aligned_cols=307 Identities=11% Similarity=0.075 Sum_probs=214.2
Q ss_pred eeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-------ccCCCCCCeEEEE------eCC-CCCeEEEE
Q 040987 347 TTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-------FLPRIGSPLLYFT------ESP-DPSLSSIS 412 (762)
Q Consensus 347 ~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-------~~~~~~~~v~~~~------~s~-~~~~l~~~ 412 (762)
...++|...|.++++++ +++++++.|++|++||..+.+.. ....+...+..+. .+. ++.+++++
T Consensus 8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 85 (393)
T d1sq9a_ 8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 85 (393)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence 45678999999999864 69999999999999998765431 1122232322222 121 33567788
Q ss_pred ecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCC-----CCEEEEeecCceEEEEEcCCCCc-------
Q 040987 413 CADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHD-----GGLVALRAENYCIHFYSLLDDRG------- 480 (762)
Q Consensus 413 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~i~d~~~~~~------- 480 (762)
+.||.+++|++........+..+.........+...+..+++.++ +.++++++.||.+++|++.....
T Consensus 86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~ 165 (393)
T d1sq9a_ 86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL 165 (393)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence 899999999976432211111111111111223356677788775 46789999999999999853321
Q ss_pred ----eeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE-eecCCCC
Q 040987 481 ----ISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI-VYEPHRD 555 (762)
Q Consensus 481 ----~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~h~~ 555 (762)
...+..... ....+...+.+++|+|++ +||+++ .|++|++||+.+++....+... .+.+| .
T Consensus 166 ~~~~~~~~~~~~~---~~~~~~~~~~~v~~s~dg-~lasgs---------~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~ 231 (393)
T d1sq9a_ 166 NWSPTLELQGTVE---SPMTPSQFATSVDISERG-LIATGF---------NNGTVQISELSTLRPLYNFESQHSMINN-S 231 (393)
T ss_dssp CCCCEEEEEEEEC---CSSSSCCCCCEEEECTTS-EEEEEC---------TTSEEEEEETTTTEEEEEEECCC---CC-C
T ss_pred eeccceeccccee---cccCCCCcEEEEEECCCC-EEEEEe---------CCCcEEEEeecccccccccccccccccc-c
Confidence 111111111 111224568899999998 888998 8999999999998876665432 34678 8
Q ss_pred CceEEEEEcCCCCeEEEEeCCCc---EEEEEccccccccccc--CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC
Q 040987 556 AGISAVAFHPNRRAAVSSSYGGD---FKVWICNDELQQKDLQ--SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET 629 (762)
Q Consensus 556 ~~v~~~~~spd~~~l~~~~~dg~---i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~ 629 (762)
..|++++|+|||++|++++.|++ |++||+.++.....+. ...........+|...|++++|+|||++|++++ |+
T Consensus 232 ~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~ 311 (393)
T d1sq9a_ 232 NSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDG 311 (393)
T ss_dssp CCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTS
T ss_pred ceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCC
Confidence 99999999999999999999875 8999999887766553 112223334457999999999999999999999 99
Q ss_pred eEEEEeCCCCeEEEEeccccCcee----EEEEeCCCCEEEEEEc
Q 040987 630 VITLWDPDRNVLVAVIGETLTPIM----NMSFVGSSEYLVATSW 669 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~~~~~v~----~~~~s~dg~~l~s~~~ 669 (762)
+|+|||+++++++.++++|.+.|. .++|+|++..+++++.
T Consensus 312 ~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~ 355 (393)
T d1sq9a_ 312 KLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGV 355 (393)
T ss_dssp EEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCE
T ss_pred EEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEccc
Confidence 999999999999999999988765 4778888887765543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=6.3e-31 Score=269.08 Aligned_cols=325 Identities=10% Similarity=0.070 Sum_probs=242.3
Q ss_pred EEEEcC-CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecC
Q 040987 286 VLAFHP-TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSD 364 (762)
Q Consensus 286 ~~~~sp-~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 364 (762)
.-.||| ||+++|+++ +|.|++||+.++... .+ +|...|.+++|+||
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~-------------------------------~~-~~~~~v~~~~~spD 53 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-------------------------------KV-PEPLRIRYVRRGGD 53 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-------------------------------EC-SCCSCEEEEEECSS
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEE-------------------------------Ec-cCCCCEEEEEECCC
Confidence 457999 999999886 579999999776432 22 58889999999999
Q ss_pred CCEEEEEecC--CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 365 GAYLYSGGKE--GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 365 g~~l~s~~~d--g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
|++|++++.+ ..|++||.++++...+..+...+.+++|+|||++|++++.++.+++|++.+++....+..+.
T Consensus 54 g~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 127 (360)
T d1k32a3 54 TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE------ 127 (360)
T ss_dssp SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS------
T ss_pred CCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccc------
Confidence 9999887755 37999999999999899999999999999999999999999999999999999988888776
Q ss_pred CcccCceeeEEEeCCCCEEEEee----------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRA----------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
..+.+++|+|||++|+.+. .++.+++||+.+++...... + ...+..++|+|||++
T Consensus 128 ----~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~-----~------~~~~~~~~~spdg~~ 192 (360)
T d1k32a3 128 ----AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT-----E------NSHDYAPAFDADSKN 192 (360)
T ss_dssp ----SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC-----S------SSBEEEEEECTTSCE
T ss_pred ----ccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc-----c------ccccccccccCCCCE
Confidence 6778999999999998654 44679999998764332211 1 455788999999999
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEE--EEEeecCCCCCceEEEEEcCCCCeEEEEeCCCc-----EEEEEcc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL--STIVYEPHRDAGISAVAFHPNRRAAVSSSYGGD-----FKVWICN 585 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~--~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~-----i~iwd~~ 585 (762)
|++++ .++.+.+|+.......... .......| ...+..+.|++++..++++..+.. +..++..
T Consensus 193 l~~~s---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (360)
T d1k32a3 193 LYYLS---------YRSLDPSPDRVVLNFSFEVVSKPFVIPLI-PGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 262 (360)
T ss_dssp EEEEE---------SCCCCCEECSSSSCEECCSCBEEEEEESS-TTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred EEEEe---------CCCceEcccccccceeeccccceEEEecc-cCccccceECCCcCcccccceeecccccceeecccC
Confidence 99998 7888999987654332110 00111234 445556677888877766544321 2233333
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCC---cEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADG---SVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSS 661 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg---~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg 661 (762)
.+..... ..+...+..+.+.+.+ .+++.++ ++.|++||+++++.. .|.+.|.+++|||||
T Consensus 263 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG 326 (360)
T d1k32a3 263 PGDYRMI------------IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADR 326 (360)
T ss_dssp CBCEEEE------------EECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTS
T ss_pred cCceeEe------------eecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCC
Confidence 2222111 1233444555554444 4566666 899999999987653 344569999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
++|++++.||. |++||+++++...++...
T Consensus 327 ~~l~~~~~Dg~--i~v~d~~~~~~~~~~~~d 355 (360)
T d1k32a3 327 KTVMVRKDDGK--IYTFPLEKPEDERTVETD 355 (360)
T ss_dssp CEEEEEETTSC--EEEEESSCTTSCEECCCC
T ss_pred CEEEEEECCCe--EEEEECCCCCcceEEEec
Confidence 99999999998 999999999887655443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.9e-29 Score=250.80 Aligned_cols=310 Identities=10% Similarity=0.037 Sum_probs=233.5
Q ss_pred cceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCce----eccCCCCCCeEEEEeCCCC-CeEEEEecCCcEE
Q 040987 345 LCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKK----KFLPRIGSPLLYFTESPDP-SLSSISCADNQVH 419 (762)
Q Consensus 345 ~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~----~~~~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~ 419 (762)
.++..++|.+.|++++|+|++++|++++.||+|++||++++.. .....|..+|.+++|+|++ .+|++++.|+.|+
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~ 82 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence 4567889999999999999999999999999999999977643 2344688999999999864 5788999999999
Q ss_pred EEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcce
Q 040987 420 LLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTV 499 (762)
Q Consensus 420 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (762)
+|+............+.. .......+.++...+++++.++.+++||++..............+.. ..
T Consensus 83 ~w~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~----~~ 149 (342)
T d1yfqa_ 83 KVDLIGSPSFQALTNNEA---------NLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT----KV 149 (342)
T ss_dssp EECSSSSSSEEECBSCCC---------CSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS----SS
T ss_pred eeeccccccccccccccc---------ccccccccccccccccccccccccceeeccccccceeeecccccccc----cc
Confidence 999998777666654442 23345566778889999999999999999776555444433222211 23
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEc-CCCCeEEEEeCCCc
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFH-PNRRAAVSSSYGGD 578 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~s-pd~~~l~~~~~dg~ 578 (762)
....+.+.+++..+++++ .++.|++|++............ ..+ ...+.+..+. +++..+++++.||.
T Consensus 150 ~~~~~~~~~~~~~~~~~~---------~d~~i~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~s~dg~ 217 (342)
T d1yfqa_ 150 KNKIFTMDTNSSRLIVGM---------NNSQVQWFRLPLCEDDNGTIEE--SGL-KYQIRDVALLPKEQEGYACSSIDGR 217 (342)
T ss_dssp CCCEEEEEECSSEEEEEE---------STTEEEEEESSCCTTCCCEEEE--CSC-SSCEEEEEECSGGGCEEEEEETTSE
T ss_pred eeeeeeeeccCCceeeec---------CCCcEEEEecccCcccceeeee--ccc-ccceeeeEeecCCCCEEEeecCCCe
Confidence 345667888999999998 8899999999887765444332 233 4455555554 46788999999999
Q ss_pred EEEEEccccccccccc-CCcee---eeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 579 FKVWICNDELQQKDLQ-SSGWS---CHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 579 i~iwd~~~~~~~~~~~-~~~~~---~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
+.+|+........... ..... .......|...+++++|+|++++||+|+ ||.|++||+++++++..+..+ ..+.
T Consensus 218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~ 296 (342)
T d1yfqa_ 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDS 296 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSE
T ss_pred EEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCE
Confidence 9999987654433321 00111 1112235667899999999999999998 999999999999999888643 3456
Q ss_pred EEEEeCCCCEEEEEEcCCCCeEEEEECCC
Q 040987 654 NMSFVGSSEYLVATSWGSKPQLSVWNMSK 682 (762)
Q Consensus 654 ~~~~s~dg~~l~s~~~d~~~~v~vwd~~~ 682 (762)
.++|+|+|++|++++.|+. +++|....
T Consensus 297 ~~~~s~~~~~l~~a~sdd~--~~~~~~~~ 323 (342)
T d1yfqa_ 297 VVKIACSDNILCLATSDDT--FKTNAAID 323 (342)
T ss_dssp EEEEEECSSEEEEEEECTH--HHHCSSSC
T ss_pred EEEEEeCCCEEEEEEcCCc--EEEeeeeC
Confidence 7889999999999998886 77776543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=7.4e-28 Score=237.83 Aligned_cols=271 Identities=16% Similarity=0.251 Sum_probs=212.7
Q ss_pred eecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEE
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIK 146 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~ 146 (762)
..+|...|.| +++||++||+|+ ||+|+|||+++++++++|.+|.+.|++++| ++ ++|+||+.|++|+
T Consensus 11 ~~~~~~~V~c---~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~-------~~l~s~s~D~~i~ 78 (293)
T d1p22a2 11 RSETSKGVYC---LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DE-------RVIITGSSDSTVR 78 (293)
T ss_dssp CCSSCCCEEE---EECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CS-------SEEEEEETTSCEE
T ss_pred cCCCCCCEEE---EEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--cc-------ceeeccccccccc
Confidence 4567778876 567899999999 799999999999999999999999999887 56 6889999999999
Q ss_pred EEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccc
Q 040987 147 YWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRL 226 (762)
Q Consensus 147 vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~ 226 (762)
+|++..+...........
T Consensus 79 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 96 (293)
T d1p22a2 79 VWDVNTGEMLNTLIHHCE-------------------------------------------------------------- 96 (293)
T ss_dssp EEESSSCCEEEEECCCCS--------------------------------------------------------------
T ss_pred cccccccccccccccccc--------------------------------------------------------------
Confidence 999998876655432210
Q ss_pred cceeeeccCCCceEEEECCCCCEE-EEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeE
Q 040987 227 AGGVTLAEMKEPQVITISSSGKYF-GIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRI 305 (762)
Q Consensus 227 ~~~~~~~~~~~v~~~~~spdg~~l-a~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v 305 (762)
....+.+....+ .+..++.+.+|+....... ........|...+..+.+.++ .+++++.|+.|
T Consensus 97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~~~s~d~~i 160 (293)
T d1p22a2 97 ------------AVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI--TLRRVLVGHRAAVNVVDFDDK--YIVSASGDRTI 160 (293)
T ss_dssp ------------CEEEEECCTTEEEEEETTSCEEEEECSSSSCC--EEEEEECCCSSCEEEEEEETT--EEEEEETTSEE
T ss_pred ------------ccccccccccceeecccccceeEeeccccccc--cccccccccccccccceeccc--ccccccCCCce
Confidence 111222333344 4667899999998877654 344556678888888887654 67888999999
Q ss_pred EEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCC
Q 040987 306 LIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTG 385 (762)
Q Consensus 306 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~ 385 (762)
++||..+.+. +..+.+|...+..+.++ +..+++++.|+.|++||+++.
T Consensus 161 ~~~d~~~~~~------------------------------~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~ 208 (293)
T d1p22a2 161 KVWNTSTCEF------------------------------VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG 208 (293)
T ss_dssp EEEETTTCCE------------------------------EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC
T ss_pred eeecCCCCcE------------------------------EEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc
Confidence 9999976643 45677788888777765 568999999999999999998
Q ss_pred ceec-cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC---------ceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 386 KKKF-LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS---------MEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 386 ~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
+... ...+...+.. +++++.+|++++.||.|++||+.. ...+..+.+|. +.|.+++|+
T Consensus 209 ~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~----------~~V~~v~~d 276 (293)
T d1p22a2 209 ACLRVLEGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHS----------GRVFRLQFD 276 (293)
T ss_dssp CEEEEECCCSSCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCS----------SCCCCEEEC
T ss_pred eeeeeecccceeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCC----------CCEEEEEEc
Confidence 8754 3445555554 557889999999999999999753 34677788877 778888884
Q ss_pred CCCCEEEEeecCceEEEEE
Q 040987 456 HDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d 474 (762)
+++|++++.||+|++||
T Consensus 277 --~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 277 --EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp --SSCEEECCSSSEEEEEC
T ss_pred --CCEEEEEecCCEEEEeC
Confidence 67899999999999997
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.5e-29 Score=245.01 Aligned_cols=271 Identities=15% Similarity=0.213 Sum_probs=212.7
Q ss_pred eeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 273 MRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 273 ~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
+.+.+.+|..+|++++|+| |++|+.||+|++||+.+ ...+|
T Consensus 5 ~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~-----------------------------------~~~~h 45 (287)
T d1pgua2 5 VLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSS-----------------------------------MHQDH 45 (287)
T ss_dssp EEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTE-----------------------------------EECCC
T ss_pred eeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCC-----------------------------------CCCCC
Confidence 4467889999999999987 99999999999999743 23568
Q ss_pred ccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSI 432 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 432 (762)
...|.++.+++++ .+++++.|+++++|++...+ ....+..+.+++++..++++ .++.+.+|+..+++....+
T Consensus 46 ~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 117 (287)
T d1pgua2 46 SNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE------FGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDIIKSV 117 (287)
T ss_dssp CSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE------CSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCEEEEE
T ss_pred CCCEEEEEecCCC-eEEEEeeccccccccccccc------cccceeeeeeccCCceEEEe-ecccceeeeccceeeeeec
Confidence 8999999998764 68899999999999986543 33457788888888777765 6678999999999888887
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
.... ...++++++..+++++.++ .+++|++........+ ... +...+++++|+|+++
T Consensus 118 ~~~~-------------~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~---~~~------~~~~v~~~~~s~~~~ 175 (287)
T d1pgua2 118 RLNS-------------PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL---KTP------LRAKPSYISISPSET 175 (287)
T ss_dssp ECSS-------------CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC---SSC------CSSCEEEEEECTTSS
T ss_pred cccc-------------eeeeeeccCcceeeeccccceeeeeeccccceeeee---eec------cCCceeEEEeccCcc
Confidence 6433 3457788888888888775 7999998654322221 111 156799999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC----------CCeEEEEeCCCcEEE
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN----------RRAAVSSSYGGDFKV 581 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd----------~~~l~~~~~dg~i~i 581 (762)
+|++++ .++.|++||+.++..... .+.+| ...|.+++|+|+ +.++++|+.|++|++
T Consensus 176 ~l~~g~---------~dg~i~i~d~~~~~~~~~----~~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~i 241 (287)
T d1pgua2 176 YIAAGD---------VMGKILLYDLQSREVKTS----RWAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFI 241 (287)
T ss_dssp EEEEEE---------TTSCEEEEETTTTEEEEC----CSCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEE
T ss_pred cccccc---------ccccccceeecccccccc----ccccc-ccccceeeecccccccccccCCCCeeEeecCCCeEEE
Confidence 999999 889999999988765432 23678 889999999875 468999999999999
Q ss_pred EEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeC
Q 040987 582 WICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDP 636 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~ 636 (762)
||+..+.... ....+|...|++++|+|+++++.++.|+.|++|++
T Consensus 242 w~~~~~~~~~----------~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 242 YSVKRPMKII----------KALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV 286 (287)
T ss_dssp EESSCTTCCE----------EETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred EECCCCCeEE----------EEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence 9997643222 22457899999999999986444444999999986
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=8.7e-29 Score=257.30 Aligned_cols=371 Identities=10% Similarity=-0.007 Sum_probs=255.5
Q ss_pred eEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 135 YCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 135 ~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
++++.+.|++|.|||..++++++.+..+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g---------------------------------------------------- 61 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG---------------------------------------------------- 61 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS----------------------------------------------------
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC----------------------------------------------------
Confidence 4678889999999999999988877533
Q ss_pred cEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC
Q 040987 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ 293 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 293 (762)
..+..++|||||++++++ .|+.+.+||+.+++............|.+.+.+.+|+|||
T Consensus 62 ---------------------~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG 120 (432)
T d1qksa2 62 ---------------------YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120 (432)
T ss_dssp ---------------------SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTT
T ss_pred ---------------------CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCC
Confidence 235678999999999854 6899999999987753111112233566677778889999
Q ss_pred cEE-EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe
Q 040987 294 RIV-AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG 372 (762)
Q Consensus 294 ~~l-~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 372 (762)
++| ++++.++.|++||..+++.. ..+..|...+....+.++++.
T Consensus 121 ~~l~vs~~~~~~v~i~d~~t~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~----- 165 (432)
T d1qksa2 121 KYAIAGAYWPPQYVIMDGETLEPK------------------------------KIQSTRGMTYDEQEYHPEPRV----- 165 (432)
T ss_dssp TEEEEEEEETTEEEEEETTTCCEE------------------------------EEEECCEECTTTCCEESCCCE-----
T ss_pred CEEEEEcCCCCeEEEEeCccccce------------------------------eeeccCCccccceeccCCCce-----
Confidence 986 67788999999999877543 344444443333344444332
Q ss_pred cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEE-EecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 373 KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSI-SCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 373 ~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
..+.++|+|..+++ ...++.+.+|+..+++......-.. ...+..
T Consensus 166 -------------------------~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~---------g~~~~~ 211 (432)
T d1qksa2 166 -------------------------AAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA---------ERFLHD 211 (432)
T ss_dssp -------------------------EEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC---------CSSEEE
T ss_pred -------------------------eEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcc---------cCcccc
Confidence 33556777766544 3446778888877765443322111 145688
Q ss_pred EEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 452 IAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
++|+|||+++++++. ++.+.++|..+.+....+........ ........+...+...++... .++.
T Consensus 212 ~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~g~~~~~~~l--------g~~~ 278 (432)
T d1qksa2 212 GGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPH-----PGRGANFVHPTFGPVWATSHM--------GDDS 278 (432)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBC-----CTTCEEEEETTTEEEEEEEBS--------SSSE
T ss_pred ceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccc-----cCcccceecCCCCceeccccc--------CCce
Confidence 999999998877765 46899999988776665544322111 222333444444555554432 5778
Q ss_pred EEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCC
Q 040987 531 LKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKA 610 (762)
Q Consensus 531 i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (762)
+.+|+...... ..| ...+....++|++..+++++.++..++|+...... +...
T Consensus 279 v~~~~~~~~~~---------~~~-~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~-----------------~~~~ 331 (432)
T d1qksa2 279 VALIGTDPEGH---------PDN-AWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP-----------------EAEI 331 (432)
T ss_dssp EEEEECCTTTC---------TTT-BTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS-----------------SHHH
T ss_pred EEecccccccc---------ccc-ccEEEEEEEcCCCCeEEEEecCCccceeecccCCC-----------------CCCe
Confidence 99998765532 345 66888999999999999999999999998754322 2222
Q ss_pred eEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc---CCCCeEEEEECCCCcee
Q 040987 611 MTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW---GSKPQLSVWNMSKLSIS 686 (762)
Q Consensus 611 i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~---d~~~~v~vwd~~~~~~~ 686 (762)
..++++ ||++.+++++ |+.+++|++.++.. +..|...+.+++|||||++|++... +..+.|+|||..++++.
T Consensus 332 ~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~ 407 (432)
T d1qksa2 332 SGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407 (432)
T ss_dssp HTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred eeEEEE-EechhhcccccCCceEecccccccc---cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEE
Confidence 334555 9999999998 99999999876633 3356678999999999998866642 11234999999999987
Q ss_pred eEEEE
Q 040987 687 WSYLL 691 (762)
Q Consensus 687 ~~~~~ 691 (762)
..+..
T Consensus 408 ~~i~~ 412 (432)
T d1qksa2 408 HVIKD 412 (432)
T ss_dssp EEECC
T ss_pred eEecC
Confidence 76644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-28 Score=248.24 Aligned_cols=312 Identities=8% Similarity=0.047 Sum_probs=226.5
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP 353 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 353 (762)
.++..+|.+.|++++|+|++++||+|+.||+|+|||+..+.... .+....+|.
T Consensus 4 v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~---------------------------~~~~~~~h~ 56 (342)
T d1yfqa_ 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---------------------------DLLQSLRYK 56 (342)
T ss_dssp EECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE---------------------------EEEEEEECS
T ss_pred EEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce---------------------------EEEEecCCC
Confidence 36778999999999999999999999999999999987653221 123344699
Q ss_pred cceeEEEEecCC-CEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE--
Q 040987 354 SEVSVLIFSSDG-AYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI-- 428 (762)
Q Consensus 354 ~~v~~~~~s~~g-~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~-- 428 (762)
.+|.+++|+|++ .+|++|+.|+.|++|+...+..... ...........+.++...+++++.++.+++||++.+..
T Consensus 57 ~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~ 136 (342)
T d1yfqa_ 57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBC
T ss_pred CCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccce
Confidence 999999999864 5799999999999999988776432 23333445566677888999999999999999865332
Q ss_pred --EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEE-
Q 040987 429 --IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA- 505 (762)
Q Consensus 429 --~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 505 (762)
......+.. ........+.+++..+++++.|+.|++||+............... .....+..
T Consensus 137 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 201 (342)
T d1yfqa_ 137 IAVKNLNSNNT--------KVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL-------KYQIRDVAL 201 (342)
T ss_dssp EEEEESCSSSS--------SSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC-------SSCEEEEEE
T ss_pred eeecccccccc--------cceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc-------ccceeeeEe
Confidence 222222221 123456678888999999999999999999887765544433221 22344444
Q ss_pred EecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee------EEEE----EeecCCCCCceEEEEEcCCCCeEEEEeC
Q 040987 506 LSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF------TLST----IVYEPHRDAGISAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 506 ~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~------~~~~----~~~~~h~~~~v~~~~~spd~~~l~~~~~ 575 (762)
+..++..+++++ .++.+.+|+........ .+.. ....+| ...+++++|+|++++||+|+.
T Consensus 202 ~~~~~~~~~~~s---------~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~ 271 (342)
T d1yfqa_ 202 LPKEQEGYACSS---------IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGS 271 (342)
T ss_dssp CSGGGCEEEEEE---------TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEET
T ss_pred ecCCCCEEEeec---------CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcc-cccceeEEecCCccEEEEECC
Confidence 455778888888 88999999987543321 1110 011345 667899999999999999999
Q ss_pred CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCcee
Q 040987 576 GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIM 653 (762)
Q Consensus 576 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~ 653 (762)
||.|++||+.+++.+..+. +...+..++|+|+|+++++++ |+.+++|..... .+..|...|.
T Consensus 272 Dg~v~vWD~~~~~~l~~~~------------~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~----~~~~~~~~i~ 334 (342)
T d1yfqa_ 272 DGIISCWNLQTRKKIKNFA------------KFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ----TIELNASSIY 334 (342)
T ss_dssp TSCEEEEETTTTEEEEECC------------CCSSSEEEEEEECSSEEEEEEECTHHHHCSSSCT----TSCCCCCEEE
T ss_pred CCEEEEEECCCCcEEEEec------------CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCC----CccCCCCeEE
Confidence 9999999999988766552 234556788999999999987 888888865432 2334554454
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=6.6e-28 Score=250.62 Aligned_cols=370 Identities=12% Similarity=0.022 Sum_probs=263.6
Q ss_pred ceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceE-----EeeecCCcc
Q 040987 42 RSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQ-----ISSLEGHKA 115 (762)
Q Consensus 42 ~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~-----~~~l~~h~~ 115 (762)
+..++++.+.+|.|.+||..+++.+........+.. ++|||||++|++++ |+.|.+||+.+++. +....+|.+
T Consensus 31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~-v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~ 109 (432)
T d1qksa2 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHI-SRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 109 (432)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeE-EEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence 356678899999999999999877755333346776 99999999999998 79999999988763 333456778
Q ss_pred ceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeee
Q 040987 116 PVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVED 195 (762)
Q Consensus 116 ~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (762)
.+.+.+|+|||+ .++++++.+++|++||..++++++.+..+.....
T Consensus 110 ~~~s~~~SpDG~------~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~---------------------------- 155 (432)
T d1qksa2 110 IETSKMEGWEDK------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYD---------------------------- 155 (432)
T ss_dssp EEECCSTTCTTT------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTT----------------------------
T ss_pred eEEecccCCCCC------EEEEEcCCCCeEEEEeCccccceeeeccCCcccc----------------------------
Confidence 888889999994 3457889999999999999999988765431000
Q ss_pred ccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhhee
Q 040987 196 TRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVM 273 (762)
Q Consensus 196 ~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~ 273 (762)
.....+.+....+.++|||+.++++ .++.+.+|+..+.+..
T Consensus 156 ---------------------------------~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~---- 198 (432)
T d1qksa2 156 ---------------------------------EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL---- 198 (432)
T ss_dssp ---------------------------------TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE----
T ss_pred ---------------------------------ceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcc----
Confidence 1112234566788999999988644 5789999999887643
Q ss_pred eeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecc
Q 040987 274 RKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWH 352 (762)
Q Consensus 274 ~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 352 (762)
......+...+..++|+|||+++++++. ++.+.+++..+.+...... ......|
T Consensus 199 ~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~-------------------------~g~~~~~ 253 (432)
T d1qksa2 199 KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED-------------------------TGGQTPH 253 (432)
T ss_dssp EEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE-------------------------CSSSSBC
T ss_pred eEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEec-------------------------cCccccc
Confidence 1222345667899999999998877765 5688999987765443110 0011123
Q ss_pred ccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEE
Q 040987 353 PSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRS 431 (762)
Q Consensus 353 ~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 431 (762)
........+...+....+.. .++.+.+|+..... ...+...+....++|++..+++++.++..++|+..+...
T Consensus 254 ~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~---~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~--- 327 (432)
T d1qksa2 254 PGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG---HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP--- 327 (432)
T ss_dssp CTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS---
T ss_pred cCcccceecCCCCceecccccCCceEEeccccccc---ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCC---
Confidence 33344444444444444433 36789999866543 344566788999999999999999999999998764321
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS 511 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~ 511 (762)
+. ....++++ ||++.+++++.|+.+++|++.++..+. . +...+.+++|||||+
T Consensus 328 ---~~----------~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~-------~------~~~~v~~~~fS~DG~ 380 (432)
T d1qksa2 328 ---EA----------EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT-------E------GQPRVVQGEFNKDGT 380 (432)
T ss_dssp ---SH----------HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC-------S------SCCEEEEEEECTTSS
T ss_pred ---CC----------CeeeEEEE-EechhhcccccCCceEecccccccccC-------C------CCCcEEEeEECCCCC
Confidence 11 23345555 999999999999999999986542221 1 145688999999999
Q ss_pred eEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 512 LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 512 ~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
+++.+... +...++.|.|||..+.+....+
T Consensus 381 ~v~~S~~~----~~~~~g~i~i~D~~T~k~~~~i 410 (432)
T d1qksa2 381 EVWFSVWN----GKDQESALVVVDDKTLELKHVI 410 (432)
T ss_dssp EEEEEEEC----CTTSCCEEEEEETTTTEEEEEE
T ss_pred EEEEEEec----CCCCCCcEEEEECCCceEEeEe
Confidence 98766421 1115689999999999775554
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=2.6e-28 Score=254.80 Aligned_cols=346 Identities=9% Similarity=-0.016 Sum_probs=238.4
Q ss_pred CcceeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe-CCEEEEEEcccceEEe-----eecCC
Q 040987 40 RSRSFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT-SNTVSIFSTSTGLQIS-----SLEGH 113 (762)
Q Consensus 40 ~~~~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~-----~l~~h 113 (762)
+.+..+++++..||.|++||..+++.+....+...+.. ++|||||++|++++ |+.|++||+++++... ...+|
T Consensus 29 d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~-vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~ 107 (426)
T d1hzua2 29 DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHI-SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA 107 (426)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEE-EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE
T ss_pred CCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeE-EEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC
Confidence 34566778888999999999999887654333356776 99999999999998 7999999999987433 33467
Q ss_pred ccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc-ceEEEeecccccCCcccCCCCCceEEEEE
Q 040987 114 KAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF-SIFSMVIPSLLRQPAQSDEKPPKLFAYLS 192 (762)
Q Consensus 114 ~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (762)
...+.+++|+|||+ .+++++..++++++||..+++++..+..+. .+..+.+ .+++.. .....
T Consensus 108 ~~~~~s~~~spDG~------~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~---~~i~~ 170 (426)
T d1hzua2 108 RSVESSKFKGYEDR------YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY--------HPEPRV---AAIIA 170 (426)
T ss_dssp EEEEECCSTTCTTT------EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE--------ESCCCE---EEEEE
T ss_pred cceEEeeeecCCCC------EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceee--------cCCCce---eEEEE
Confidence 78888899999994 334666789999999999999998887665 3222222 011110 11111
Q ss_pred eeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhh
Q 040987 193 VEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAER 270 (762)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~ 270 (762)
..+..... .+....+.+.+++...+.........+...+..++|+|+++++.++ .+..+.+++..+++..
T Consensus 171 s~d~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~- 242 (426)
T d1hzua2 171 SHEHPEFI-------VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLS- 242 (426)
T ss_dssp CSSSSEEE-------EEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEE-
T ss_pred CCCCCEEE-------EecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEE-
Confidence 00000000 1123445666777766665545566778889999999999998755 5678999999988754
Q ss_pred heeeeeeeccCcCeEEEEEcCCCc-EE--EEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccce
Q 040987 271 VVMRKITLHHTKKLTVLAFHPTQR-IV--AAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCT 347 (762)
Q Consensus 271 ~~~~~~~~~~~~~v~~~~~sp~~~-~l--~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (762)
.. .....+........+.+.+. .+ +..+.|+.+.+|+...... ....++...
T Consensus 243 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~-----------------------~~~~~~~~~ 297 (426)
T d1hzua2 243 -AL-VDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH-----------------------PQYAWKKVA 297 (426)
T ss_dssp -EE-EECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC-----------------------TTTBTSEEE
T ss_pred -EE-eccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc-----------------------ccccceEeE
Confidence 11 11111222223333333222 22 2345678888888644321 112335667
Q ss_pred eeeccccceeEEEEecCCCEEEE-------EecCCeEEEEecCCCceec----------cCCCCCCeEEEEeCCCCCeEE
Q 040987 348 TWHWHPSEVSVLIFSSDGAYLYS-------GGKEGVLVVWQLDTGKKKF----------LPRIGSPLLYFTESPDPSLSS 410 (762)
Q Consensus 348 ~~~~h~~~v~~~~~s~~g~~l~s-------~~~dg~i~~wd~~~~~~~~----------~~~~~~~v~~~~~s~~~~~l~ 410 (762)
.+.+|...+..++|+||+++|++ ++.+++|++||+++++... +..+...+..++|||||++++
T Consensus 298 ~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~ 377 (426)
T d1hzua2 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377 (426)
T ss_dssp EEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred EEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence 88999999999999999999994 4567899999999887531 235566799999999999886
Q ss_pred EEe-----cCCcEEEEEcCCceEEEEEccCC
Q 040987 411 ISC-----ADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 411 ~~~-----~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
++. .++.|+|||..+++....+.++.
T Consensus 378 vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 378 FSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp EEECCCTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred EEEecCCCCCCeEEEEECCCCeEEEEECCCC
Confidence 542 47789999999999999988754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.6e-27 Score=230.07 Aligned_cols=275 Identities=16% Similarity=0.268 Sum_probs=217.1
Q ss_pred ceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcC
Q 040987 346 CTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMP 424 (762)
Q Consensus 346 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~ 424 (762)
+.....|...|+|++ +||++|++|+.||+|++||+.+++.. .+..|...|.+++| ++++|++++.|+.+++|++.
T Consensus 8 i~~~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~ 83 (293)
T d1p22a2 8 IHCRSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN 83 (293)
T ss_dssp EECCCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred EeccCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence 345567888898865 47999999999999999999999875 46678899999886 67899999999999999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLV 504 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 504 (762)
.+.......... .....+.+....++++..++.+.+|+............. ..+ ...+..+
T Consensus 84 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~v~~~ 144 (293)
T d1p22a2 84 TGEMLNTLIHHC------------EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL-VGH------RAAVNVV 144 (293)
T ss_dssp SCCEEEEECCCC------------SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE-CCC------SSCEEEE
T ss_pred cccccccccccc------------cccccccccccceeecccccceeEeeccccccccccccc-ccc------ccccccc
Confidence 988777765533 234456667778999999999999999877654443332 112 4556666
Q ss_pred EEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEc
Q 040987 505 ALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWIC 584 (762)
Q Consensus 505 ~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~ 584 (762)
.+. ...+++++ .|+.+++||..+.+....+ .++ ...+..+.++ +.++++++.|+.|++||+
T Consensus 145 ~~~--~~~~~~~s---------~d~~i~~~d~~~~~~~~~~-----~~~-~~~v~~~~~~--~~~l~~~~~dg~i~i~d~ 205 (293)
T d1p22a2 145 DFD--DKYIVSAS---------GDRTIKVWNTSTCEFVRTL-----NGH-KRGIACLQYR--DRLVVSGSSDNTIRLWDI 205 (293)
T ss_dssp EEE--TTEEEEEE---------TTSEEEEEETTTCCEEEEE-----ECC-SSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred eec--cccccccc---------CCCceeeecCCCCcEEEEE-----ccc-ccccccccCC--CCeEEEecCCCEEEEEec
Confidence 655 45677777 8899999999998876655 456 6677777665 568999999999999999
Q ss_pred ccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC---------CeEEEEeccccCceeE
Q 040987 585 NDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR---------NVLVAVIGETLTPIMN 654 (762)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~---------~~~~~~l~~~~~~v~~ 654 (762)
.+....... ..+...+. .+++++.+|++++ ||.|++||+.+ ..++..+.+|.++|++
T Consensus 206 ~~~~~~~~~-----------~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~ 272 (293)
T d1p22a2 206 ECGACLRVL-----------EGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 272 (293)
T ss_dssp TTCCEEEEE-----------CCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCC
T ss_pred ccceeeeee-----------cccceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEE
Confidence 887765544 24555555 4567889999998 99999999743 3577888999999999
Q ss_pred EEEeCCCCEEEEEEcCCCCeEEEEE
Q 040987 655 MSFVGSSEYLVATSWGSKPQLSVWN 679 (762)
Q Consensus 655 ~~~s~dg~~l~s~~~d~~~~v~vwd 679 (762)
++| |+++|+|+|.||. |++||
T Consensus 273 v~~--d~~~l~s~s~Dg~--i~iWD 293 (293)
T d1p22a2 273 LQF--DEFQIVSSSHDDT--ILIWD 293 (293)
T ss_dssp EEE--CSSCEEECCSSSE--EEEEC
T ss_pred EEE--cCCEEEEEecCCE--EEEeC
Confidence 999 5679999999998 99997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.2e-27 Score=243.04 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=199.5
Q ss_pred cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceE------EEEEccCCCCCCCCCcccCceeeEE---EeC----
Q 040987 390 LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEI------IRSISGIKLPCPLPEEYKGLCRDIA---FNH---- 456 (762)
Q Consensus 390 ~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~---~s~---- 456 (762)
...|...|.++++++ +++++++.|+.|++||..+.+. ......+. ..+..+. ..+
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 77 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK----------SGLHHVDVLQAIERDAF 77 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCT----------TCEEEEEEEEEEETTTE
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeecc----------CCceEeeeEeeeccCCC
Confidence 457889999999864 6899999999999999765321 11111222 1111111 111
Q ss_pred CCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC-----CCeEEEEeeeccccCCCceeEE
Q 040987 457 DGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD-----GSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 457 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-----g~~l~~~~~~~~~~~~~~d~~i 531 (762)
++.++++++.||.+++|++.....................+...+..+++.++ +.++++++ .|+.+
T Consensus 78 ~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~dg~i 148 (393)
T d1sq9a_ 78 ELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD---------VKGTT 148 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE---------TTSCE
T ss_pred CCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc---------CCCcE
Confidence 23467889999999999987665444333222111111223455777888775 46788887 88999
Q ss_pred EEEEecCCCc-----------eeEEEEE--eecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCce
Q 040987 532 KFWVSGTQNK-----------EFTLSTI--VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGW 598 (762)
Q Consensus 532 ~iwd~~~~~~-----------~~~~~~~--~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 598 (762)
++|++..... ...+... ....+ ...+.+++|+|++ +||+|+.|++|++||+.+++....++
T Consensus 149 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~---- 222 (393)
T d1sq9a_ 149 YIWKFHPFADESNSLTLNWSPTLELQGTVESPMTP-SQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFE---- 222 (393)
T ss_dssp EEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSS-CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEE----
T ss_pred EEEEeecCCcccceeeeeeccceecccceecccCC-CCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccc----
Confidence 9999864321 1111111 11233 5668999999997 88999999999999999887665442
Q ss_pred eeeeecccCCCCeEEEEEcCCCcEEEEEc-CC---eEEEEeCCCCeEEEEec-------------cccCceeEEEEeCCC
Q 040987 599 SCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET---VITLWDPDRNVLVAVIG-------------ETLTPIMNMSFVGSS 661 (762)
Q Consensus 599 ~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~---~i~iwd~~~~~~~~~l~-------------~~~~~v~~~~~s~dg 661 (762)
+.....+|...|++++|+|||++|++|+ |+ .|++||+++++++..+. +|.+.|++++|+||+
T Consensus 223 -~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~ 301 (393)
T d1sq9a_ 223 -SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG 301 (393)
T ss_dssp -CCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS
T ss_pred -cccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCC
Confidence 3344567899999999999999999998 65 59999999998887764 799999999999999
Q ss_pred CEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 662 EYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 662 ~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
++|+|++.|+. |++||+++|+++..+..|.+
T Consensus 302 ~~l~S~s~D~~--v~vWd~~~g~~~~~l~gH~~ 332 (393)
T d1sq9a_ 302 ETLCSAGWDGK--LRFWDVKTKERITTLNMHCD 332 (393)
T ss_dssp SEEEEEETTSE--EEEEETTTTEEEEEEECCGG
T ss_pred CeeEEECCCCE--EEEEECCCCCEEEEECCcCC
Confidence 99999999998 99999999999999988865
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=4.5e-26 Score=237.72 Aligned_cols=349 Identities=10% Similarity=-0.008 Sum_probs=239.8
Q ss_pred EEcCCCc--EEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCC
Q 040987 288 AFHPTQR--IVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDG 365 (762)
Q Consensus 288 ~~sp~~~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 365 (762)
.++.|.+ ++++.+.||.|++||+.+++.+ ..+..|. .+..++|+|||
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~------------------------------~~l~~g~-~~~~vafSPDG 73 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIV------------------------------KVIDTGY-AVHISRMSASG 73 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEE------------------------------EEEECCS-SEEEEEECTTS
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEE------------------------------EEEeCCC-CeeEEEECCCC
Confidence 3445433 5677888999999999887543 5666664 58999999999
Q ss_pred CEEEEEecCCeEEEEecCCCceecc------CCCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFL------PRIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~------~~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
++|++++.|+++++||+.+++.... ..+...+.+++|+|||+++++++ .++.+.+||..++.+...+..+...
T Consensus 74 k~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~ 153 (426)
T d1hzua2 74 RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153 (426)
T ss_dssp CEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEEC
T ss_pred CEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCC
Confidence 9999999999999999999875321 22334456677889999876654 6899999999999998888766533
Q ss_pred CCCC-CcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEE
Q 040987 439 CPLP-EEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTV 516 (762)
Q Consensus 439 ~~~~-~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~ 516 (762)
.... ..+.+....+.+++++..++.... .+.+.+++.............. ...+..++|+|++++++++
T Consensus 154 ~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~g~~~~~a 224 (426)
T d1hzua2 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---------APFLADGGWDSSHRYFMTA 224 (426)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEEC---------CSSEEEEEECTTSCEEEEE
T ss_pred ccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEecc---------CCccEeeeECCCCcEEEee
Confidence 2111 112234556677777776665543 3566666666554332221111 4558899999999999888
Q ss_pred eeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCC-eEE--EEeCCCcEEEEEcccccccccc
Q 040987 517 DIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRR-AAV--SSSYGGDFKVWICNDELQQKDL 593 (762)
Q Consensus 517 ~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~-~l~--~~~~dg~i~iwd~~~~~~~~~~ 593 (762)
.. .+..+.+++..+++....... ..+ ........+.+++. .+. ..+.|+.+.+|+........
T Consensus 225 ~~--------~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~-- 290 (426)
T d1hzua2 225 AN--------NSNKVAVIDSKDRRLSALVDV---GKT-PHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ-- 290 (426)
T ss_dssp ET--------TCSEEEEEETTTTEEEEEEEC---SSC-CCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT--
T ss_pred ee--------cccceeeeecccccEEEEecc---CCc-ccccceeeeecCCCCceEEeccCCCceEEEeecccccccc--
Confidence 74 677899999998877655432 111 22222333333322 222 23357778888776543221
Q ss_pred cCCceeeeeecccCCCCeEEEEEcCCCcEEEE-------Ec-CCeEEEEeCCCCeEEEEe---------ccccCceeEEE
Q 040987 594 QSSGWSCHAVGSYKKKAMTAAAFSADGSVLAV-------AA-ETVITLWDPDRNVLVAVI---------GETLTPIMNMS 656 (762)
Q Consensus 594 ~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~-------~~-d~~i~iwd~~~~~~~~~l---------~~~~~~v~~~~ 656 (762)
..|.+.....+|...+..++|+|||++|++ +. |++|+|||++++++...+ ..|...|.+++
T Consensus 291 --~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~ 368 (426)
T d1hzua2 291 --YAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPE 368 (426)
T ss_dssp --TBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEE
T ss_pred --ccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEE
Confidence 244555666788999999999999999995 33 789999999998765543 23556699999
Q ss_pred EeCCCCEEEEEE---cCCCCeEEEEECCCCceeeEEEEe
Q 040987 657 FVGSSEYLVATS---WGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 657 ~s~dg~~l~s~~---~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
|||||++++.+. .+..+.|+|||.+++++...+..+
T Consensus 369 fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~ 407 (426)
T d1hzua2 369 YNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDP 407 (426)
T ss_dssp ECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred ECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEECCC
Confidence 999999875432 222234999999999988766543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=1.4e-23 Score=208.02 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=215.1
Q ss_pred EEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE-EEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccC
Q 040987 369 YSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS-ISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKG 447 (762)
Q Consensus 369 ~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (762)
++.+.+++|.+||+++++.......+..+..++|+|||++|+ ++..++.|.+||+.+++.+..+..+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~----------- 74 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS----------- 74 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-----------
T ss_pred EEECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccc-----------
Confidence 356688999999999999876666667789999999999885 45578999999999999999887654
Q ss_pred ceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCC
Q 040987 448 LCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIG 526 (762)
Q Consensus 448 ~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~ 526 (762)
.+..+++++++..+++. ..++.+.+|+..+++....+.. ......++|+|+++.++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~dg~~~~~~~~-------- 135 (301)
T d1l0qa2 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----------GKSPLGLALSPDGKKLYVTNN-------- 135 (301)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSSEEEEEECTTSSEEEEEET--------
T ss_pred cccccccccccccccccccccceeeecccccceeeeeccc-----------cccceEEEeecCCCeeeeeec--------
Confidence 46789999999876554 5667899999998876665543 344788999999998877653
Q ss_pred ceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC-CcEEEEEcccccccccccCCceeeeeecc
Q 040987 527 SLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG-GDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 527 ~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
.+..+.+|+..+......+. + ...+..++++|+++.+++++.+ +.+.+|+...........
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 197 (301)
T d1l0qa2 136 GDKTVSVINTVTKAVINTVS------V-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----------- 197 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEE------C-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-----------
T ss_pred cccceeeeeccccceeeecc------c-CCCceEEEeeccccceeeecccccccccccccceeeeeccc-----------
Confidence 67889999999887766553 2 4467889999999988888765 556677776655444331
Q ss_pred cCCCCeEEEEEcCCCcEEEEEc----CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEE-EEEcCCCCeEEEEEC
Q 040987 606 YKKKAMTAAAFSADGSVLAVAA----ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLV-ATSWGSKPQLSVWNM 680 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~la~~~----d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~-s~~~d~~~~v~vwd~ 680 (762)
....+..++|+++++.++++. ++.|++||+.+++++..+..+ ..+.+++|+|||++|+ +++.|+. |++||+
T Consensus 198 -~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~-~~~~~va~spdg~~l~va~~~~~~--i~v~D~ 273 (301)
T d1l0qa2 198 -VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKVYVALSFCNT--VSVIDT 273 (301)
T ss_dssp -CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTE--EEEEET
T ss_pred -ccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCC-CCEEEEEEeCCCCEEEEEECCCCe--EEEEEC
Confidence 345677899999999887653 478999999999999888644 4579999999999874 6666776 999999
Q ss_pred CCCceeeEEEE
Q 040987 681 SKLSISWSYLL 691 (762)
Q Consensus 681 ~~~~~~~~~~~ 691 (762)
++++++..+..
T Consensus 274 ~t~~~~~~~~v 284 (301)
T d1l0qa2 274 ATNTITATMAV 284 (301)
T ss_dssp TTTEEEEEEEC
T ss_pred CCCeEEEEEeC
Confidence 99999887654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=7e-23 Score=202.78 Aligned_cols=274 Identities=15% Similarity=0.130 Sum_probs=212.6
Q ss_pred eeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEe--CCEEEEEEcccceEEeeecCCccceeEE
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCT--SNTVSIFSTSTGLQISSLEGHKAPVTTV 120 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~--~~~i~iwd~~~~~~~~~l~~h~~~V~~v 120 (762)
+..+++++.++.|.+||..+++.+........+.. ++|||||++|++++ ++.|.+||+++++.++++..|.. +..+
T Consensus 2 ~~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~-va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~ 79 (301)
T d1l0qa2 2 TFAYIANSESDNISVIDVTSNKVTATIPVGSNPMG-AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGV 79 (301)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEE-EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEE
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEEECCCCceE-EEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-cccc
Confidence 34666788999999999999887655454455665 99999999886554 59999999999999999988765 6899
Q ss_pred EEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccC
Q 040987 121 IVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETT 200 (762)
Q Consensus 121 ~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (762)
+|++++. .+++++..++.+.+|+..+++....+..+
T Consensus 80 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 115 (301)
T d1l0qa2 80 AVSPDGK------QVYVTNMASSTLSVIDTTSNTVAGTVKTG-------------------------------------- 115 (301)
T ss_dssp EECTTSS------EEEEEETTTTEEEEEETTTTEEEEEEECS--------------------------------------
T ss_pred ccccccc------cccccccccceeeecccccceeeeecccc--------------------------------------
Confidence 9999995 45667778899999999998877665422
Q ss_pred cCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeee
Q 040987 201 KSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITL 278 (762)
Q Consensus 201 ~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~ 278 (762)
..+.+++|+|||+.++.+ .++.+.+|+..+.... .. .
T Consensus 116 -----------------------------------~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~ 154 (301)
T d1l0qa2 116 -----------------------------------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI-----NT-V 154 (301)
T ss_dssp -----------------------------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE-----EE-E
T ss_pred -----------------------------------ccceEEEeecCCCeeeeeeccccceeeeecccccee-----ee-c
Confidence 334567899999988644 5788999999988753 22 2
Q ss_pred ccCcCeEEEEEcCCCcEEEEeecC-CeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeecccccee
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDVT-GRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS 357 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 357 (762)
.+...+..++++|+++.++++..+ +.+.+|+....+.. ..+. ....+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~-~~~~~~ 203 (301)
T d1l0qa2 155 SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI------------------------------DTVK-VEAAPS 203 (301)
T ss_dssp ECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE------------------------------EEEE-CSSEEE
T ss_pred ccCCCceEEEeeccccceeeecccccccccccccceeee------------------------------eccc-ccCCcc
Confidence 345568899999999988877665 56777776544322 2222 334567
Q ss_pred EEEEecCCCEEEEEec---CCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEE-EEecCCcEEEEEcCCceEEEEEc
Q 040987 358 VLIFSSDGAYLYSGGK---EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSS-ISCADNQVHLLKMPSMEIIRSIS 433 (762)
Q Consensus 358 ~~~~s~~g~~l~s~~~---dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~ 433 (762)
.++|+++++.++.+.. ++.|++||..+++..........+..++|+|||++|+ ++..++.|.+||+.+++.+.++.
T Consensus 204 ~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred eeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 8999999998876643 3689999999998876555667789999999999875 55678999999999999988875
Q ss_pred c
Q 040987 434 G 434 (762)
Q Consensus 434 ~ 434 (762)
.
T Consensus 284 v 284 (301)
T d1l0qa2 284 V 284 (301)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=5.9e-24 Score=215.31 Aligned_cols=291 Identities=11% Similarity=-0.037 Sum_probs=213.6
Q ss_pred EEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEE-ecCCcEEEEEcCCceEEEEEccC
Q 040987 359 LIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSIS-CADNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 359 ~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~ 435 (762)
++|++++++|++++.+++|.+||+++++.... ..+...+.+++|+|||++++++ ..++.|.+||+.+++.+..+...
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~ 81 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS 81 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence 46889999999999999999999999988643 3345567899999999987655 46889999999999998877643
Q ss_pred CCCCCCCCcccCceeeEEEeCCCCEEEEee------------cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 436 KLPCPLPEEYKGLCRDIAFNHDGGLVALRA------------ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 436 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
.... .....+..++|+|||++++++. .++.+.+|+..+++....+..... ...+..
T Consensus 82 ~~~~----~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~ 149 (346)
T d1jmxb_ 82 SVPG----EVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--------PRQVYL 149 (346)
T ss_dssp CSTT----EEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--------CSSCCC
T ss_pred cccc----ccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec--------cCceEE
Confidence 3211 1112456899999999988775 356788899888766554433222 223455
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEE------------
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAV------------ 571 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~------------ 571 (762)
+.++++++.++.+. .+.+|+..+++....+.. ......+.++|++..+.
T Consensus 150 ~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (346)
T d1jmxb_ 150 MRAADDGSLYVAGP------------DIYKMDVKTGKYTVALPL-------RNWNRKGYSAPDVLYFWPHQSPRHEFSML 210 (346)
T ss_dssp EEECTTSCEEEESS------------SEEEECTTTCCEEEEECS-------TTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred EEecCCCEEEEeCC------------cceEEEccCCCEEEEEec-------CCCccceEEeccccEEEEEecCCCceEee
Confidence 66777877766543 578899888776555421 22334445555554332
Q ss_pred --------------EEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCC
Q 040987 572 --------------SSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPD 637 (762)
Q Consensus 572 --------------~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~ 637 (762)
++..++.+.+||..++...... ...+...+..+.+++++.+++...++.|.+||..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~ 280 (346)
T d1jmxb_ 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE----------FADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLK 280 (346)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEE----------EEECSSCEEEEEECSSCTTEEEEEESEEEEEETT
T ss_pred eeeeeeccCceeEeeccCCceEEEEECCCCceEEEE----------eecccceeEEEEEeCCCCEEEEecCCeEEEEECC
Confidence 2233345666666655433222 2345678889999999999988887889999999
Q ss_pred CCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEee
Q 040987 638 RNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHV 693 (762)
Q Consensus 638 ~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~ 693 (762)
+++.+..+. +...+.+++|||||++|++++.|+. |++||+++++.+..+..+.
T Consensus 281 ~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~--v~v~D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 281 QRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND--LAVFNPDTLEKVKNIKLPG 333 (346)
T ss_dssp TTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE--EEEEETTTTEEEEEEECSS
T ss_pred CCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc--EEEEECccCCEEEEEECCC
Confidence 999998876 4567999999999999999999987 9999999999999888775
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.91 E-value=3.6e-22 Score=201.99 Aligned_cols=308 Identities=12% Similarity=0.052 Sum_probs=213.2
Q ss_pred ceeecCCCEEEEEe-CCEEEEEEcccceEEeeec-CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceE
Q 040987 79 PAFSNDVKRLLVCT-SNTVSIFSTSTGLQISSLE-GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELL 156 (762)
Q Consensus 79 ~~~s~dg~~la~~~-~~~i~iwd~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~ 156 (762)
++|+++++||++++ +++|.|||++++++++++. .|...+.+++|+|||+ .++++++.++.|++||+.+++.+
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~------~l~v~~~~~~~v~~~d~~t~~~~ 75 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNR------TAYVLNNHYGDIYGIDLDTCKNT 75 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSS------EEEEEETTTTEEEEEETTTTEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCC------EEEEEECCCCcEEEEeCccCeee
Confidence 78999999999999 7999999999999999987 4667789999999994 33467778999999999999988
Q ss_pred EEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCC
Q 040987 157 KTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMK 236 (762)
Q Consensus 157 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~ 236 (762)
..+....... .+..
T Consensus 76 ~~~~~~~~~~------------------------------------------------------------------~~~~ 89 (346)
T d1jmxb_ 76 FHANLSSVPG------------------------------------------------------------------EVGR 89 (346)
T ss_dssp EEEESCCSTT------------------------------------------------------------------EEEE
T ss_pred eeeccccccc------------------------------------------------------------------ccCC
Confidence 7765321100 0112
Q ss_pred CceEEEECCCCCEEEEE-------------eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCC
Q 040987 237 EPQVITISSSGKYFGIR-------------KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTG 303 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~-------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg 303 (762)
.+..++|+|||++++++ .+..+.+|+..+++.. .... .......+..+.+++++..++++ +
T Consensus 90 ~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~ 163 (346)
T d1jmxb_ 90 SMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA--KPVR-TFPMPRQVYLMRAADDGSLYVAG---P 163 (346)
T ss_dssp CSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB--CCSE-EEECCSSCCCEEECTTSCEEEES---S
T ss_pred ceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee--eEEE-eeeccCceEEEEecCCCEEEEeC---C
Confidence 35578999999988643 2677899999887754 1111 11223456677788888766553 4
Q ss_pred eEEEEeccCCceeeccccc--ccccccccccCCCCcccCCccccceeeecccccee----EEEEecCCCEEEEEecCCeE
Q 040987 304 RILIWRGFGDRTFATNDNK--MNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVS----VLIFSSDGAYLYSGGKEGVL 377 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~----~~~~s~~g~~l~s~~~dg~i 377 (762)
.+.+|+..+++........ .....+.+. +............+. ...+.+....++++..+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (346)
T d1jmxb_ 164 DIYKMDVKTGKYTVALPLRNWNRKGYSAPD-----------VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGY 232 (346)
T ss_dssp SEEEECTTTCCEEEEECSTTCCCTTBCCCB-----------CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEE
T ss_pred cceEEEccCCCEEEEEecCCCccceEEecc-----------ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceE
Confidence 5899998877655432111 111111111 111111111111111 12223344556666777889
Q ss_pred EEEecCCCcee--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe
Q 040987 378 VVWQLDTGKKK--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN 455 (762)
Q Consensus 378 ~~wd~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 455 (762)
.+||..++... ....+...+..+.+++++.+++... ++.+.+||..+++.+..+... ..+.+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~-----------~~~~~va~s 300 (346)
T d1jmxb_ 233 LSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD-----------HTYYCVAFD 300 (346)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-----------SCCCEEEEC
T ss_pred EEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec-CCeEEEEECCCCcEEEEEcCC-----------CCEEEEEEc
Confidence 99999988764 3445667888999999998888764 568999999999988887642 457899999
Q ss_pred CCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 456 HDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 456 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
|||++|++++.|+.|++||..+++.+.++...
T Consensus 301 ~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~p 332 (346)
T d1jmxb_ 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 332 (346)
T ss_dssp SSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred CCCCEEEEEeCCCcEEEEECccCCEEEEEECC
Confidence 99999999999999999999999888877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=5e-22 Score=200.06 Aligned_cols=298 Identities=12% Similarity=0.052 Sum_probs=210.4
Q ss_pred CEEEEEe-CCEEEEEEcccceEEeeecC--CccceeEEEEeCCCCcccceeeeE-EeeecCCeEEEEeCCCcceEEEEEe
Q 040987 86 KRLLVCT-SNTVSIFSTSTGLQISSLEG--HKAPVTTVIVVPASTPATKILSYC-WTASLDGTIKYWDFSVPELLKTIDV 161 (762)
Q Consensus 86 ~~la~~~-~~~i~iwd~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~~l~~~l-~s~s~d~~i~vWd~~~~~~~~~~~~ 161 (762)
+||++++ |++|.|||++++++++++.. +...+.+++|+||| +++ ++++.++.|.+||+.+++.+..+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg-------~~l~v~~~~~~~v~v~D~~t~~~~~~~~~ 74 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGG-------RIAYATVNKSESLVKIDLVTGETLGRIDL 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTS-------SEEEEEETTTTEEEEEETTTCCEEEEEEC
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCC-------CEEEEEECCCCeEEEEECCCCcEEEEEec
Confidence 5888988 79999999999999998864 44568899999999 454 5778899999999999999887765
Q ss_pred ccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEE
Q 040987 162 KFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVI 241 (762)
Q Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 241 (762)
+..... ...+..+
T Consensus 75 ~~~~~~-------------------------------------------------------------------~~~~~~v 87 (337)
T d1pbyb_ 75 STPEER-------------------------------------------------------------------VKSLFGA 87 (337)
T ss_dssp CBTTEE-------------------------------------------------------------------EECTTCE
T ss_pred CCCccc-------------------------------------------------------------------ccceeeE
Confidence 432111 1234568
Q ss_pred EECCCCCEEEEE-------------eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEE
Q 040987 242 TISSSGKYFGIR-------------KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIW 308 (762)
Q Consensus 242 ~~spdg~~la~~-------------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw 308 (762)
+|+||+++++++ .+..+.+||..+++.. ... .+...+..++|+|||+++++++.+ +.+|
T Consensus 88 ~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~-~~~~~~~~~~~s~dg~~l~~~~~~--~~~~ 159 (337)
T d1pbyb_ 88 ALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRR-----KAF-EAPRQITMLAWARDGSKLYGLGRD--LHVM 159 (337)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEE-----EEE-ECCSSCCCEEECTTSSCEEEESSS--EEEE
T ss_pred EEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEE-----Eec-cccCCceEEEEcCCCCEEEEEcCC--ccee
Confidence 999999998744 2467899999988753 333 345678899999999999988654 7789
Q ss_pred eccCCceeecccccccccccccccCCCCcccCCccccceeeecccc--ceeEEEEecCCCEEEEEecCCeEEEEecCCCc
Q 040987 309 RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPS--EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGK 386 (762)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~ 386 (762)
|..+++............ ......+.........+.. .........+.........++.+.+|+..++.
T Consensus 160 d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (337)
T d1pbyb_ 160 DPEAGTLVEDKPIQSWEA---------ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230 (337)
T ss_dssp ETTTTEEEEEECSTTTTT---------TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC
T ss_pred eeecCcEEEEeecCCccc---------cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc
Confidence 988776543221110000 0000000000111111111 11122222333334445556789999999887
Q ss_pred eec--cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 387 KKF--LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 387 ~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
... ...+...+..+.+++++.+++.. ++.+++||+.+++.+..+... ..+.+++|+|||++|+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~-----------~~~~~~~~s~dG~~l~v~ 297 (337)
T d1pbyb_ 231 MAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-----------HSYYSVNVSTDGSTVWLG 297 (337)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-----------SCCCEEEECTTSCEEEEE
T ss_pred EEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCC-----------CCEEEEEECCCCCEEEEE
Confidence 643 44566778889999999988765 589999999999998887542 467899999999999999
Q ss_pred ecCceEEEEEcCCCCceeeEEee
Q 040987 465 AENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
+.++.|++||..+.+.+.++...
T Consensus 298 ~~~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 298 GALGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp SBSSEEEEEETTTCCEEEEEECG
T ss_pred eCCCcEEEEECCCCcEEEEEECC
Confidence 99999999999999888877654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=7e-23 Score=206.43 Aligned_cols=281 Identities=11% Similarity=0.034 Sum_probs=207.2
Q ss_pred CEEEEEecCCeEEEEecCCCceec---cCCCCCCeEEEEeCCCCCeEE-EEecCCcEEEEEcCCceEEEEEccCCCCCCC
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKF---LPRIGSPLLYFTESPDPSLSS-ISCADNQVHLLKMPSMEIIRSISGIKLPCPL 441 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 441 (762)
+++++++.|++|.+||+++++... ...+...+..++|+|||++++ +++.++.|.+||+.+++.+..+..+....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~-- 79 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE-- 79 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence 479999999999999999998754 233455678899999999875 45678999999999999998876654211
Q ss_pred CCcccCceeeEEEeCCCCEEEEeec------------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecC
Q 040987 442 PEEYKGLCRDIAFNHDGGLVALRAE------------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQD 509 (762)
Q Consensus 442 ~~~~~~~v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 509 (762)
+...+..++|+|++++++++.. +..+.+||..+++....+.. ...+..++|+||
T Consensus 80 ---~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----------~~~~~~~~~s~d 145 (337)
T d1pbyb_ 80 ---RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-----------PRQITMLAWARD 145 (337)
T ss_dssp ---EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-----------CSSCCCEEECTT
T ss_pred ---cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc-----------cCCceEEEEcCC
Confidence 1134568999999999988763 46788899988876665543 234678899999
Q ss_pred CCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCe--------------------
Q 040987 510 GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRA-------------------- 569 (762)
Q Consensus 510 g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~-------------------- 569 (762)
|+++++++ . .+.+||..+++....+.. + .......++|++..
T Consensus 146 g~~l~~~~---------~--~~~~~d~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (337)
T d1pbyb_ 146 GSKLYGLG---------R--DLHVMDPEAGTLVEDKPI-----Q--SWEAETYAQPDVLAVWNQHESSGVMATPFYTARK 207 (337)
T ss_dssp SSCEEEES---------S--SEEEEETTTTEEEEEECS-----T--TTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBT
T ss_pred CCEEEEEc---------C--CcceeeeecCcEEEEeec-----C--CccccceecCCcceeeccccccceeeeeeeeeee
Confidence 99999987 3 367899888766554421 1 01111122222221
Q ss_pred ----EEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEe
Q 040987 570 ----AVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVI 645 (762)
Q Consensus 570 ----l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l 645 (762)
......++.+.+|+..++...... ...+...+..+.++|++.+++.+ ++.|++||+.+++.+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~ 276 (337)
T d1pbyb_ 208 DIDPADPTAYRTGLLTMDLETGEMAMRE----------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRV 276 (337)
T ss_dssp TSCTTSGGGEEEEEEEEETTTCCEEEEE----------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEE
T ss_pred ccceeeecccCccEEEEEcCCCcEEEEE----------ecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEE
Confidence 111122345777887766543221 22456778889999999988755 689999999999999888
Q ss_pred ccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 646 GETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 646 ~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
. +...+.+++|+|||++|++++.|+. |++||+++++.+..+..+..
T Consensus 277 ~-~~~~~~~~~~s~dG~~l~v~~~~~~--i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 277 P-LPHSYYSVNVSTDGSTVWLGGALGD--LAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp E-CSSCCCEEEECTTSCEEEEESBSSE--EEEEETTTCCEEEEEECGGG
T ss_pred c-CCCCEEEEEECCCCCEEEEEeCCCc--EEEEECCCCcEEEEEECCCC
Confidence 5 5677899999999999999999988 99999999999988877654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=2e-19 Score=183.77 Aligned_cols=322 Identities=13% Similarity=-0.021 Sum_probs=215.1
Q ss_pred eecCcccccCCceeecCCCEEEEEe------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeee-
Q 040987 68 IRGGRSYVSSPPAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTAS- 140 (762)
Q Consensus 68 ~~~h~~~v~~~~~~s~dg~~la~~~------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s- 140 (762)
...+..++.. +++||||+.++... .+.|.|||.++++.+.++..+... .++|+||| ++|++++
T Consensus 16 ~~~~~~p~~~-~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG-------~~l~va~~ 85 (373)
T d2madh_ 16 AGAADGPTND-EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSG-------SEFALAST 85 (373)
T ss_pred cccCCCCccc-cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCC-------CEEEEEee
Confidence 3467788887 99999999988763 268999999999999999877654 79999999 5665653
Q ss_pred ---------cCCeEEEEeCCCcceEEEEEeccc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCC
Q 040987 141 ---------LDGTIKYWDFSVPELLKTIDVKFS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPN 210 (762)
Q Consensus 141 ---------~d~~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 210 (762)
.++.|.+||..+++.+..+..+.. ...... .+..+++.+.+..... ...
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~-------------~~~~~~~s~dg~~~~v--------~~~ 144 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGP-------------YSWMNANTPNNADLLF--------FQF 144 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEecc-------------CCCcEEEEeCCCcEEE--------EEE
Confidence 468899999999999988876652 222211 0111333332222111 122
Q ss_pred CccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEE--EEeCCeEEEEEccCchhhhheeeeee-eccCcCeEEE
Q 040987 211 TMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFG--IRKQRKLLIWKVPDVEAERVVMRKIT-LHHTKKLTVL 287 (762)
Q Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la--~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~ 287 (762)
..++.+.+|+....+.. .+...+.++.++|+|+.+. .+.++.+.+|+...++.......... .........+
T Consensus 145 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (373)
T d2madh_ 145 AAGPAVGLVVQGGSSDD-----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPA 219 (373)
T ss_pred cCCCceEEeeccCCeEE-----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeE
Confidence 34567788887776544 3444577899999998764 45799999999988775411111111 1222234455
Q ss_pred EEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCE
Q 040987 288 AFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAY 367 (762)
Q Consensus 288 ~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 367 (762)
.+++++.++ ..+.++.+.+|+..+..... ...+..+........+.|.+..
T Consensus 220 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~ 270 (373)
T d2madh_ 220 QANKSGRIV-WPVYSGKILQADISAAGATN----------------------------KAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EECCCceEE-EecCCceEEEEEcCCCeEEE----------------------------EEeeccccCcEEeeeeccCcce
Confidence 667666554 55578899999987654322 1223334444455555555555
Q ss_pred EEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccC
Q 040987 368 LYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKG 447 (762)
Q Consensus 368 l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (762)
.+..+.|+.... .+..++..++....++.+.+||..+++.+..+... .
T Consensus 271 ~~~~~~d~~~~~---------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~-----------~ 318 (373)
T d2madh_ 271 QVAYLKSSDGIY---------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-----------H 318 (373)
T ss_pred eeEEecCCCeEE---------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEecCC-----------C
Confidence 555554443222 12345566677778889999999999988887543 4
Q ss_pred ceeeEEEeCCCCE--EEEeecCceEEEEEcCCCCceeeEEe
Q 040987 448 LCRDIAFNHDGGL--VALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 448 ~v~~~~~s~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.+..++|+|||+. +++++.|+.|++||+.+++.+..+..
T Consensus 319 ~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 319 DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence 6789999999984 46788999999999999998877653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=8.2e-19 Score=179.06 Aligned_cols=327 Identities=9% Similarity=-0.049 Sum_probs=216.7
Q ss_pred eccCCCceEEEECCCCCEEEEE------eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee-----
Q 040987 232 LAEMKEPQVITISSSGKYFGIR------KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD----- 300 (762)
Q Consensus 232 ~~~~~~v~~~~~spdg~~la~~------~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~----- 300 (762)
..+.+++..++++|||+.+++. ..+.+.+||..+++.. .....+. ...++|+|||++|++++
T Consensus 17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~-----~~~~~~~--~~~~a~SpDG~~l~va~~~~~~ 89 (373)
T d2madh_ 17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSIL-----GHVNGGF--LPNPVAAHSGSEFALASTSFSR 89 (373)
T ss_pred ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEE-----EEEeCCC--CccEEEcCCCCEEEEEeecCCc
Confidence 3467788999999999998753 3467999999998854 3333333 33799999999998864
Q ss_pred -----cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc-------cceeEEEEecCCCEE
Q 040987 301 -----VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP-------SEVSVLIFSSDGAYL 368 (762)
Q Consensus 301 -----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~s~~g~~l 368 (762)
.++.|.+||..+++.... +..+. .....+.|+++++.+
T Consensus 90 ~~~~~~~~~v~v~D~~t~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~ 139 (373)
T d2madh_ 90 IAKGKRTDYVEVFDPVTFLPIAD------------------------------IELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred ccccccceEEEEEECCCCcEEEE------------------------------EecCCcceeEeccCCCcEEEEeCCCcE
Confidence 357899999988765431 11111 122457899999877
Q ss_pred EEEe--cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeE-EEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 369 YSGG--KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLS-SISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 369 ~s~~--~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+... .++.+.+|+....+.... .....++.++|+|+.+ ++.+.|+.+.+|+...+............. ..
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~----~~ 212 (373)
T d2madh_ 140 LFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTA----AQ 212 (373)
T ss_pred EEEEEcCCCceEEeeccCCeEEEE---eccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeecccc----Cc
Confidence 6654 356788999887765432 2335678899998765 567789999999999888777655433111 00
Q ss_pred cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 446 KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
........+++++.+ +..+.++.+.+|+............... ........+.|.+...+..+
T Consensus 213 ~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-------- 275 (373)
T d2madh_ 213 NLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDAL--------SGGRKADTWRPGGWQQVAYL-------- 275 (373)
T ss_pred cceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccc--------cCcEEeeeeccCcceeeEEe--------
Confidence 122344556666654 4556788899999877643222211111 11222333333322222221
Q ss_pred CceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGS 605 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 605 (762)
...-....+.+++..++....++.+.+||..+++....+.
T Consensus 276 -----------------------------~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~----------- 315 (373)
T d2madh_ 276 -----------------------------KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS----------- 315 (373)
T ss_pred -----------------------------cCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec-----------
Confidence 0011122334455666777778899999999988776653
Q ss_pred cCCCCeEEEEEcCCCcE--EEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCC
Q 040987 606 YKKKAMTAAAFSADGSV--LAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGS 660 (762)
Q Consensus 606 ~~~~~i~~~~~s~dg~~--la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~d 660 (762)
+...+..++|+|||+. +++++ |+.|++||+.+++.+..+.++......+++.++
T Consensus 316 -~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 316 -LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred -CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 5677899999999985 34555 999999999999999999888777777777654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.2e-19 Score=182.11 Aligned_cols=299 Identities=15% Similarity=0.139 Sum_probs=199.1
Q ss_pred EEEEEecCCeEEEEecCCCce---eccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKK---KFLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
.+++++.+++|++|++..... .....++..+..++|+|||++|++++. ++.|.+|++........+..+...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~---- 81 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---- 81 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC----
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc----
Confidence 346677899999999875432 344567788999999999999976654 789999999865332222221110
Q ss_pred CcccCceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeecc
Q 040987 443 EEYKGLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLA 521 (762)
Q Consensus 443 ~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~ 521 (762)
...+..++|+|||++|++++. ++.+.+|+............... ...+.++.++|++++++.++.
T Consensus 82 ---~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--------~~~~~~v~~s~d~~~~~~~~~--- 147 (333)
T d1ri6a_ 82 ---PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG--------LDGCHSANISPDNRTLWVPAL--- 147 (333)
T ss_dssp ---SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC--------CTTBCCCEECTTSSEEEEEEG---
T ss_pred ---CCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCC--------CccceEEEeeecceeeecccc---
Confidence 145678999999999998874 67899999877655444333222 344678899999999988874
Q ss_pred ccCCCceeEEEEEEecCCCceeEEEEE-eecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccccccccCCcee
Q 040987 522 EEGIGSLVCLKFWVSGTQNKEFTLSTI-VYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 522 ~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
.+..+.+|+............. ..... ......++|++++.+++... ..+...+|+........... ....
T Consensus 148 -----~~~~i~~~~~~~~~~~~~~~~~~~~~~~-g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 220 (333)
T d1ri6a_ 148 -----KQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QTLD 220 (333)
T ss_dssp -----GGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-EEEE
T ss_pred -----ccceeeEEEeccCCcceeeeceeeeeec-CCCccEEEEeccceeEEeeccccCceEEEeecccccceeee-eeee
Confidence 5678999999877654433322 12233 45678899999999887665 44567788765433221110 0000
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEEEEe---ccccCceeEEEEeCCCCEEEEEEcCCCCe
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLVAVI---GETLTPIMNMSFVGSSEYLVATSWGSKPQ 674 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~~~l---~~~~~~v~~~~~s~dg~~l~s~~~d~~~~ 674 (762)
..............+++++|+++++... ++.+.+|++........+ ..+...+.+++|+|||++|++++.+. +.
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~-~~ 299 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-HH 299 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-CE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC-Ce
Confidence 0001112345567889999999887765 789999988765332222 22334577899999999998887553 24
Q ss_pred EEEE--ECCCCceeeEEEE
Q 040987 675 LSVW--NMSKLSISWSYLL 691 (762)
Q Consensus 675 v~vw--d~~~~~~~~~~~~ 691 (762)
|++| |.++|++...-..
T Consensus 300 v~v~~id~~tG~l~~~~~~ 318 (333)
T d1ri6a_ 300 ISVYEIVGEQGLLHEKGRY 318 (333)
T ss_dssp EEEEEEETTTTEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEec
Confidence 9998 5567766544333
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5.3e-18 Score=169.86 Aligned_cols=257 Identities=10% Similarity=0.081 Sum_probs=174.1
Q ss_pred ccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec-CCeEEEEe
Q 040987 233 AEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV-TGRILIWR 309 (762)
Q Consensus 233 ~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vw~ 309 (762)
.+.+.+..++|||||++|+++ .++.|.+|++...... ........+...+..++|+|||++|++++. ++.|.+|+
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~--~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~ 111 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGA--LTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR 111 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCC--EEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCc--EEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence 456788999999999999644 4899999999876543 111222234556788999999999998875 67899998
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC-CeEEEEecCCCcee
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKK 388 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~ 388 (762)
........ ......+...+.++.++|++++++.++.+ ..+.+|+.......
T Consensus 112 ~~~~~~~~----------------------------~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~ 163 (333)
T d1ri6a_ 112 LEDGLPVG----------------------------VVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL 163 (333)
T ss_dssp EETTEEEE----------------------------EEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred ccccccee----------------------------cccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence 76554322 12334466678889999999998887754 67999998765431
Q ss_pred -------ccCCCCCCeEEEEeCCCCCeEEEEec-CCcEEEEEcCCc----eEEEEEccCCCCCCCCCcccCceeeEEEeC
Q 040987 389 -------FLPRIGSPLLYFTESPDPSLSSISCA-DNQVHLLKMPSM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNH 456 (762)
Q Consensus 389 -------~~~~~~~~v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 456 (762)
...........++|++++..++.... .+...+++.... ............ .........+++++
T Consensus 164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~s~ 239 (333)
T d1ri6a_ 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN----FSDTRWAADIHITP 239 (333)
T ss_dssp EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT----CCSCCCEEEEEECT
T ss_pred eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecC----CCccccceeEEEec
Confidence 12334456788999999998876654 556777776442 122222211110 01124567789999
Q ss_pred CCCEEEEe-ecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 457 DGGLVALR-AENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 457 ~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
++++++.. ..++.+.+|++............... ...+..++|+|||++|++++. .++.|++|+
T Consensus 240 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~p~~~a~spDGk~l~va~~--------~~~~v~v~~ 304 (333)
T d1ri6a_ 240 DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT-------ETQPRGFNVDHSGKYLIAAGQ--------KSHHISVYE 304 (333)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC-------SSSCCCEEECTTSSEEEEECT--------TTCEEEEEE
T ss_pred ccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC-------CCCeeEEEEeCCCCEEEEEEC--------CCCeEEEEE
Confidence 99976665 45678999998776555444332111 234678999999999887762 568999997
Q ss_pred ecC
Q 040987 536 SGT 538 (762)
Q Consensus 536 ~~~ 538 (762)
++.
T Consensus 305 id~ 307 (333)
T d1ri6a_ 305 IVG 307 (333)
T ss_dssp EET
T ss_pred EEC
Confidence 654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=2.4e-19 Score=181.68 Aligned_cols=300 Identities=12% Similarity=0.072 Sum_probs=199.5
Q ss_pred ceeecCCCEEEEEe------CCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEe----------eecC
Q 040987 79 PAFSNDVKRLLVCT------SNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWT----------ASLD 142 (762)
Q Consensus 79 ~~~s~dg~~la~~~------~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s----------~s~d 142 (762)
.+.+|||+++++.. .+.|.|||..+++++.++..+.. ..++||||| ++|+. ++.|
T Consensus 7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~--~~~a~SpDg-------~~l~v~~~~~~~~~~g~~d 77 (355)
T d2bbkh_ 7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL--PNPVVADDG-------SFIAHASTVFSRIARGERT 77 (355)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS--CEEEECTTS-------SCEEEEEEEEEETTEEEEE
T ss_pred EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCC--CceEEcCCC-------CEEEEEeCCCccccccCCC
Confidence 56799999998764 25799999999999999976544 479999999 34443 3458
Q ss_pred CeEEEEeCCCcceEEEEEeccc-eEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEec
Q 040987 143 GTIKYWDFSVPELLKTIDVKFS-IFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNL 221 (762)
Q Consensus 143 ~~i~vWd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~ 221 (762)
+.|++||..+++.+..+..+.. .... ...+..++|.+.+..... +..+.+..+.+|+.
T Consensus 78 ~~v~v~D~~t~~~~~~~~~~~~~~~~~-------------~~~~~~~~~s~dg~~~~v--------~~~~~~~~~~~~~~ 136 (355)
T d2bbkh_ 78 DYVEVFDPVTLLPTADIELPDAPRFLV-------------GTYPWMTSLTPDGKTLLF--------YQFSPAPAVGVVDL 136 (355)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCB-------------SCCGGGEEECTTSSEEEE--------EECSSSCEEEEEET
T ss_pred CEEEEEECCCCCEEEEEecCCcceeec-------------CCCCceEEEecCCCeeEE--------ecCCCCceeeeeec
Confidence 8999999999999988875531 1111 001111222221111111 23456778999999
Q ss_pred CCccccceeeecc------CCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCC
Q 040987 222 TESRLAGGVTLAE------MKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQ 293 (762)
Q Consensus 222 ~~~~~~~~~~~~~------~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 293 (762)
.+++.+....... ......+.+++|++.+... .++.+.+++...... .+...+....+++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 206 (355)
T d2bbkh_ 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP----------EDEFLINHPAYSQKA 206 (355)
T ss_dssp TTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC----------TTSCBCSCCEEETTT
T ss_pred CCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc----------eecceeeeccccCCC
Confidence 9998874332221 2345567888888887654 456666666655432 233445566788888
Q ss_pred cEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEec
Q 040987 294 RIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGK 373 (762)
Q Consensus 294 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 373 (762)
..++.++.++.+++|++..+............ ...............+++++++..++....
T Consensus 207 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~ 268 (355)
T d2bbkh_ 207 GRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT------------------EAERADGWRPGGWQQVAYHRALDRIYLLVD 268 (355)
T ss_dssp TEEEEEBTTSEEEEEECTTSSCEECCCEESSC------------------HHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred CeEEEecCCCeEEEEecCCCcEEEEeccCCcc------------------cceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence 88999999999999999776532211000000 000000111223456889999998877654
Q ss_pred C----------CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCe--EEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 374 E----------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSL--SSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 374 d----------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
+ ..|.+||..+++..........+.+++|+|||+. ++++..++.|++||.++++.++++.++.
T Consensus 269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCC
T ss_pred cCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcC
Confidence 3 4699999999988765556667889999999984 4455668999999999999999987653
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.83 E-value=2.1e-19 Score=182.20 Aligned_cols=301 Identities=11% Similarity=-0.022 Sum_probs=204.3
Q ss_pred EEecCCCEEEEEe-----cCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEe----------cCCcEEEEEcC
Q 040987 360 IFSSDGAYLYSGG-----KEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISC----------ADNQVHLLKMP 424 (762)
Q Consensus 360 ~~s~~g~~l~s~~-----~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~d~~i~i~d~~ 424 (762)
+.+|||++++... .+.+|.+||..+++....... +....++|||||++|++.+ .++.|++||..
T Consensus 8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~-g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~ 86 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-GFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV 86 (355)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE-CSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC-CCCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECC
Confidence 5579999987653 346799999999987543322 2233699999999988754 36789999999
Q ss_pred CceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee--cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEE
Q 040987 425 SMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA--ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 502 (762)
+++....+..+..... ........++|+|++++++++. .+..+.+|+..+++.+..+......... ......
T Consensus 87 t~~~~~~~~~~~~~~~---~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 160 (355)
T d2bbkh_ 87 TLLPTADIELPDAPRF---LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF---PTAPDT 160 (355)
T ss_dssp TCCEEEEEEETTCCCC---CBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEE---EEETTE
T ss_pred CCCEEEEEecCCccee---ecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEe---ecCCcc
Confidence 9999888765442211 0112346789999999888764 4578999999998776665432111000 012234
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVW 582 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iw 582 (762)
.+.+++|++.++.... .++.+.+++...... .+ ...+....+++++..++.++.++.+++|
T Consensus 161 ~~~~~~dg~~~~v~~~--------~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 221 (355)
T d2bbkh_ 161 FFMHCRDGSLAKVAFG--------TEGTPEITHTEVFHP----------ED-EFLINHPAYSQKAGRLVWPTYTGKIHQI 221 (355)
T ss_dssp EEEEETTSCEEEEECC--------SSSCCEEEECCCCSC----------TT-SCBCSCCEEETTTTEEEEEBTTSEEEEE
T ss_pred eEEEcCCCCEEEEEec--------CCCeEEEEecccccc----------ee-cceeeeccccCCCCeEEEecCCCeEEEE
Confidence 5677888887766542 445566666554432 22 3345566788888899999999999999
Q ss_pred EcccccccccccCCceeee----eecccCCCCeEEEEEcCCCcEEEEEc-C----------CeEEEEeCCCCeEEEEecc
Q 040987 583 ICNDELQQKDLQSSGWSCH----AVGSYKKKAMTAAAFSADGSVLAVAA-E----------TVITLWDPDRNVLVAVIGE 647 (762)
Q Consensus 583 d~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~s~dg~~la~~~-d----------~~i~iwd~~~~~~~~~l~~ 647 (762)
++..+....... .... ............+++++++..++... + ..|.+||..+++.+..+..
T Consensus 222 ~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~ 298 (355)
T d2bbkh_ 222 DLSSGDAKFLPA---VEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM 298 (355)
T ss_dssp ECTTSSCEECCC---EESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred ecCCCcEEEEec---cCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC
Confidence 998775432211 0000 00000112334689999999887653 2 4799999999999888863
Q ss_pred ccCceeEEEEeCCCCE--EEEEEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 648 TLTPIMNMSFVGSSEY--LVATSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 648 ~~~~v~~~~~s~dg~~--l~s~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
...+.+++|+|||+. +++++.|+. |++||+++++++.++...
T Consensus 299 -~~~~~~~a~spDG~~~l~v~~~~d~~--i~v~D~~tg~~~~~i~~~ 342 (355)
T d2bbkh_ 299 -GHEIDSINVSQDEKPLLYALSTGDKT--LYIHDAESGEELRSVNQL 342 (355)
T ss_dssp -EEEECEEEECCSSSCEEEEEETTTTE--EEEEETTTCCEEEEECCC
T ss_pred -CCCEEEEEEcCCCCeEEEEEECCCCE--EEEEECCCCCEEEEEeCc
Confidence 456889999999984 455566776 999999999998877543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.75 E-value=2.6e-16 Score=165.48 Aligned_cols=383 Identities=8% Similarity=-0.042 Sum_probs=221.9
Q ss_pred eEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeec---------CCeEEEEe
Q 040987 239 QVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDV---------TGRILIWR 309 (762)
Q Consensus 239 ~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---------dg~v~vw~ 309 (762)
..+.|.+|++++. ..++.+.+||+.+++.........+..|...|.++.|||||++|+.++. ++.+.+||
T Consensus 20 ~~~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d 98 (470)
T d2bgra1 20 YSLRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD 98 (470)
T ss_dssp CCCEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred cCCEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence 3578999998765 4678899999999986411111223345678999999999999998743 57789999
Q ss_pred ccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceec
Q 040987 310 GFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKF 389 (762)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~ 389 (762)
+.+++. ..+..|...+..+.|||||++|+... ++.+++|+..+++...
T Consensus 99 ~~~~~~-------------------------------~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~ 146 (470)
T d2bgra1 99 LNKRQL-------------------------------ITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR 146 (470)
T ss_dssp TTTTEE-------------------------------CCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred CCCCcc-------------------------------cccccCCccccccccccCcceeeEee-cccceEEECCCCceee
Confidence 987642 45667888899999999999999864 6789999999887654
Q ss_pred cCCC-------------------CCCeEEEEeCCCCCeEEEEecCCc-EEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 390 LPRI-------------------GSPLLYFTESPDPSLSSISCADNQ-VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 390 ~~~~-------------------~~~v~~~~~s~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
+... .+....+.|||||++|++...|.. +..+.+.. ...... .....
T Consensus 147 ~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~-------~~~~~~------~~~~~ 213 (470)
T d2bgra1 147 ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSF-------YSDESL------QYPKT 213 (470)
T ss_dssp CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEE-------CCSTTC------SSCEE
T ss_pred eeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEe-------eccCCC------CCCee
Confidence 3221 123455789999999998865533 44443321 000000 00112
Q ss_pred eeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccc-cCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCce
Q 040987 450 RDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNH-QPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSL 528 (762)
Q Consensus 450 ~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d 528 (762)
..+.+...+. ...+..+.+|++..+............. .........+..+.|.++++.++....+ ....
T Consensus 214 ~~~~~~~~g~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r-----~~~~ 284 (470)
T d2bgra1 214 VRVPYPKAGA----VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRR-----IQNY 284 (470)
T ss_dssp EEEECCBTTS----CCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEES-----STTE
T ss_pred eeeccccccc----cCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeec-----cCCc
Confidence 2222222221 1233467889987765433221111000 0000114567889999999877665321 1123
Q ss_pred eEEEEEEecC--CCceeEEE----EEe----ecCCCCCceEEEEEcCCC--CeEEEEeCCCcEEEE--Eccccccccccc
Q 040987 529 VCLKFWVSGT--QNKEFTLS----TIV----YEPHRDAGISAVAFHPNR--RAAVSSSYGGDFKVW--ICNDELQQKDLQ 594 (762)
Q Consensus 529 ~~i~iwd~~~--~~~~~~~~----~~~----~~~h~~~~v~~~~~spd~--~~l~~~~~dg~i~iw--d~~~~~~~~~~~ 594 (762)
..+.+++... +....... ... ...+ ... ...+.+++ .+++.+..||...|| +...+......
T Consensus 285 ~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~-~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt- 360 (470)
T d2bgra1 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRF-RPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFIT- 360 (470)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSS-SCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESC-
T ss_pred eEEEEEEecCCCCcEEEEEEEeeeeeeccceeecc-cCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCceeeec-
Confidence 4455665543 32211100 000 0111 111 23344443 345566677765555 54444333222
Q ss_pred CCceeeeeecccCCCCeEEEEEcCCCcEE-EEEc--C---C--eEEEEeCCCCeEEEEe----ccccCceeEEEEeCCCC
Q 040987 595 SSGWSCHAVGSYKKKAMTAAAFSADGSVL-AVAA--E---T--VITLWDPDRNVLVAVI----GETLTPIMNMSFVGSSE 662 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l-a~~~--d---~--~i~iwd~~~~~~~~~l----~~~~~~v~~~~~s~dg~ 662 (762)
.+...|..+ ++++++.+ ++++ + + .|+-.++..+.....+ .+|...+.+++|||||+
T Consensus 361 -----------~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgk 428 (470)
T d2bgra1 361 -----------KGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAK 428 (470)
T ss_dssp -----------CSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSS
T ss_pred -----------cCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCC
Confidence 234556655 44455544 3333 2 2 2444455554433333 46778899999999999
Q ss_pred EEEE-EEcCCCCeEEEEECCCCceeeEEEEe
Q 040987 663 YLVA-TSWGSKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 663 ~l~s-~~~d~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
+++. ++..+.-.+.+|+..+|+.+..++..
T Consensus 429 y~~~~~s~~~~P~~~l~~~~~g~~v~~le~n 459 (470)
T d2bgra1 429 YYQLRCSGPGLPLYTLHSSVNDKGLRVLEDN 459 (470)
T ss_dssp EEEEEECSBSSCEEEEEETTTTEEEEEEECC
T ss_pred EEEEEecCCCCCeEEEEECCCCCEEEEEecc
Confidence 9774 33333334899999999999887643
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.74 E-value=4e-16 Score=164.08 Aligned_cols=365 Identities=12% Similarity=0.047 Sum_probs=202.4
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeee-----cCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSL-----EGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l-----~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
+.|.+|++++. -.++.+.+||+++++....+ ..|...|.++.||||| ++|+.++. ..++|..
T Consensus 22 ~~W~~d~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg-------~~i~~~~~--~~~~~r~--- 88 (470)
T d2bgra1 22 LRWISDHEYLY-KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG-------QFILLEYN--YVKQWRH--- 88 (470)
T ss_dssp CEECSSSEEEE-ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTS-------SEEEEEEE--EEECSSS---
T ss_pred CEeCCCCEEEE-EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCC-------CEEEEEEC--Ccceeee---
Confidence 88999998765 34788999999999876544 4566889999999999 56666653 2233331
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+.++.+.+||+++++.. .+..
T Consensus 89 ---------------------------------------------------------s~~~~~~l~d~~~~~~~--~l~~ 109 (470)
T d2bgra1 89 ---------------------------------------------------------SYTASYDIYDLNKRQLI--TEER 109 (470)
T ss_dssp ---------------------------------------------------------CEEEEEEEEETTTTEEC--CSSC
T ss_pred ---------------------------------------------------------ccCceEEEEECCCCccc--cccc
Confidence 23456667777776654 4566
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeec------------------cCcCeEEEEEcCCCcE
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLH------------------HTKKLTVLAFHPTQRI 295 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~------------------~~~~v~~~~~sp~~~~ 295 (762)
+...+..+.|||||+.||...++.+.+|+..+++.. +.... ..+....+.|||||++
T Consensus 110 ~~~~~~~~~~SPDG~~ia~~~~~~l~~~~~~~g~~~-----~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ 184 (470)
T d2bgra1 110 IPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSY-----RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTF 184 (470)
T ss_dssp CCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCE-----ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSE
T ss_pred CCccccccccccCcceeeEeecccceEEECCCCcee-----eeeeccCCCcccccccceeeeeeecCCccccEECCCCCc
Confidence 778889999999999999999999999999988753 11111 2233466889999999
Q ss_pred EEEeecCCe-EEEEeccCCceeecccccccccccccccC-----CCCcccCCccccce-----------eeeccccceeE
Q 040987 296 VAAGDVTGR-ILIWRGFGDRTFATNDNKMNLNLMNNEEE-----RPGVRDNDDADLCT-----------TWHWHPSEVSV 358 (762)
Q Consensus 296 l~~~~~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~h~~~v~~ 358 (762)
||+...|.. +..|.+....................... ...+.......... ........+..
T Consensus 185 ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (470)
T d2bgra1 185 LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCD 264 (470)
T ss_dssp EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEE
T ss_pred cceeEecCCcCceEEEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEE
Confidence 999876543 55554321100000000000000000000 00000000000000 01112234567
Q ss_pred EEEecCCCEEEEEe-cC---Ce--EEEEecCCCceeccC--------------CCCCCeEEEEeCCCC--CeEEEEecCC
Q 040987 359 LIFSSDGAYLYSGG-KE---GV--LVVWQLDTGKKKFLP--------------RIGSPLLYFTESPDP--SLSSISCADN 416 (762)
Q Consensus 359 ~~~s~~g~~l~s~~-~d---g~--i~~wd~~~~~~~~~~--------------~~~~~v~~~~~s~~~--~~l~~~~~d~ 416 (762)
+.|.++++.++... .. .. +..+|..++....+. .+.. ....+.+++ ..++.+..+|
T Consensus 265 ~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~s~~dg 342 (470)
T d2bgra1 265 VTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRP--SEPHFTLDGNSFYKIISNEEG 342 (470)
T ss_dssp EEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSC--CCCEECTTSSEEEEEEECTTS
T ss_pred EEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccC--CCceeeecCCCcEEEEeccCc
Confidence 88999887665432 21 12 344455555542211 0111 123344443 3455566677
Q ss_pred cEEEE--EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE-EeecCc------eEEEEEcCCCCceeeEEee
Q 040987 417 QVHLL--KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA-LRAENY------CIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 417 ~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg------~i~i~d~~~~~~~~~~~~~ 487 (762)
..++| +...+.......+ . ..|..+ ++++++.+. +++.++ .|+-.++..+.....+...
T Consensus 343 ~~~ly~~~~~g~~~~~lt~g-~----------~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~ 410 (470)
T d2bgra1 343 YRHICYFQIDKKDCTFITKG-T----------WEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCE 410 (470)
T ss_dssp CEEEEEEETTCSCCEESCCS-S----------SCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTT
T ss_pred CceeEEEeccCCceeeeccC-C----------eeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEeccc
Confidence 65554 5554444333332 2 345554 444555543 333222 2444455544433332221
Q ss_pred cccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 488 ERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 488 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
...+ ...+..++|||||++++..... ...-.+.+|+..+++.+..+.
T Consensus 411 ~~~~------~~~~~s~~fSpdgky~~~~~s~------~~~P~~~l~~~~~g~~v~~le 457 (470)
T d2bgra1 411 LNPE------RCQYYSVSFSKEAKYYQLRCSG------PGLPLYTLHSSVNDKGLRVLE 457 (470)
T ss_dssp TSTT------TBCBEEEEECTTSSEEEEEECS------BSSCEEEEEETTTTEEEEEEE
T ss_pred ccCC------CCCEEEEEECCCCCEEEEEecC------CCCCeEEEEECCCCCEEEEEe
Confidence 2222 5678999999999998854411 033468889888887776663
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.72 E-value=2.1e-17 Score=164.85 Aligned_cols=352 Identities=11% Similarity=0.017 Sum_probs=219.4
Q ss_pred EEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCc------cccceeeeccccceeEEEEecCCCEEE
Q 040987 296 VAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDD------ADLCTTWHWHPSEVSVLIFSSDGAYLY 369 (762)
Q Consensus 296 l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~s~~g~~l~ 369 (762)
+++++.+|.|++|++.+++.+... ..|++............ ......-..|........++|||++|+
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~I------pVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lf 87 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRI------PVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLF 87 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEE------CSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEE
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEE------EeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEE
Confidence 557788999999999888776533 12333322211111000 011111233445555666689999987
Q ss_pred EEe-cCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeEEEEe-cCCc------------------EEEEEcCCce
Q 040987 370 SGG-KEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLSSISC-ADNQ------------------VHLLKMPSME 427 (762)
Q Consensus 370 s~~-~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~-~d~~------------------i~i~d~~~~~ 427 (762)
... .+.+|.++|+++++.... .........++|+|+|+.+++.. .+.. +..+|..+.+
T Consensus 88 V~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 88 INDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred EEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 665 568999999999987543 34567899999999998543332 2222 3557888777
Q ss_pred EEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC-ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEE
Q 040987 428 IIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN-YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVAL 506 (762)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 506 (762)
...++... +....++++|||+++++.+.+ ..+..++..+......+... .....+++
T Consensus 168 v~~qI~v~-----------~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-----------n~p~~~~~ 225 (441)
T d1qnia2 168 VAWQVIVD-----------GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-----------NVERIAAA 225 (441)
T ss_dssp EEEEEEES-----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-----------EHHHHHHH
T ss_pred eeEEEecC-----------CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeC-----------CccceEEE
Confidence 77666543 356789999999999887755 33444454444444333322 11233456
Q ss_pred ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEE-EeCCCcEEEEEcc
Q 040987 507 SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVS-SSYGGDFKVWICN 585 (762)
Q Consensus 507 sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~-~~~dg~i~iwd~~ 585 (762)
+|+|+++..+ .++.+.+++.........+.. ......+.++|||+++++ +..+++|.+||+.
T Consensus 226 ~~dGk~~~v~----------~~~v~vvd~~~~~~v~~~IPv-------gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 226 VKAGNFKTIG----------DSKVPVVDGRGESEFTRYIPV-------PKNPHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp HHTTCCBCCT----------TCCCCEEECSSSCSSEEEECC-------BSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred ecCCCEEEeC----------CCCcEEEEcccCCceEEEEeC-------CCCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence 8899988765 456777777666666555532 224457999999998755 5678999999997
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCC----------CeEEEEe-----cccc
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDR----------NVLVAVI-----GETL 649 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~----------~~~~~~l-----~~~~ 649 (762)
.......-......+........-.....+|+++|..+.+.. |..|..|++.. ...+..+ .||.
T Consensus 289 k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~ 368 (441)
T d1qnia2 289 KLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN 368 (441)
T ss_dssp GHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE
T ss_pred hhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCC
Confidence 644321111000011111111233456679999998888887 99999999742 1233333 4777
Q ss_pred CceeEEEEeCCCCEEEEE---EcCCC--------CeEEEEECCCCceeeEEEEe
Q 040987 650 TPIMNMSFVGSSEYLVAT---SWGSK--------PQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 650 ~~v~~~~~s~dg~~l~s~---~~d~~--------~~v~vwd~~~~~~~~~~~~~ 692 (762)
..+.+.+|+|||++|+++ |.|.- -.-.+.|+...++...+..+
T Consensus 369 ~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~~~ 422 (441)
T d1qnia2 369 HASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHDGP 422 (441)
T ss_dssp EETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred ccccccccCCCCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEecCC
Confidence 778888899999999999 55542 12466777655554444443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.68 E-value=1.7e-15 Score=153.44 Aligned_cols=295 Identities=10% Similarity=0.004 Sum_probs=186.4
Q ss_pred CcccccCCceeecCCCEE--EEEe--C--CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEee-----
Q 040987 71 GRSYVSSPPAFSNDVKRL--LVCT--S--NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTA----- 139 (762)
Q Consensus 71 h~~~v~~~~~~s~dg~~l--a~~~--~--~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~----- 139 (762)
+.+.... ++.++|++.. +... + ..|.+||..+++.+.++.++... .++|+||| ++|+.+
T Consensus 18 ~~g~~~~-~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg-------~~i~~~~~~~~ 87 (368)
T d1mdah_ 18 SDGSSCD-HGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSG-------SDFALASTSFA 87 (368)
T ss_dssp CCCCCBC-CCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTS-------SCEEEEEEEET
T ss_pred cCCCccc-cccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCC-------CEEEEEcccCc
Confidence 3444443 7788888864 3322 2 46888899999999998877664 58999999 455543
Q ss_pred -----ecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccc
Q 040987 140 -----SLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNG 214 (762)
Q Consensus 140 -----s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~ 214 (762)
+.|++|++||..+++++..+..+...
T Consensus 88 ~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~------------------------------------------------- 118 (368)
T d1mdah_ 88 RSAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------------------------------------- 118 (368)
T ss_dssp TTTSSSEEEEEEEECTTTCCEEEEEEETTSC-------------------------------------------------
T ss_pred cccccccCCeEEEEECCCCcEeeeecCCccc-------------------------------------------------
Confidence 35778899998888887776543210
Q ss_pred cEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC-
Q 040987 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP- 291 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp- 291 (762)
..........++|+|||++|+++ .++.+.+||+.+++.. .....+.... +.|
T Consensus 119 ----------------~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~-----~~~~~~~~~~----~~~~ 173 (368)
T d1mdah_ 119 ----------------RFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFH----IHPG 173 (368)
T ss_dssp ----------------SCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEE-----EEEECSSCCC----CEEE
T ss_pred ----------------eecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEe-----EEeeccCcce----EccC
Confidence 00012234568999999999855 4799999999998754 2222222211 112
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
....++..+.||.+.++++......... .....+..+...+....+.+++..+.+.
T Consensus 174 ~~~~~v~~~~Dg~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (368)
T d1mdah_ 174 AAATHYLGSCPASLAASDLAAAPAAAGI------------------------VGAQCTGAQNCSSQAAQANYPGMLVWAV 229 (368)
T ss_dssp ETTEEECCCCTTSCEEEECCSSCCCCEE------------------------CCCCSCTTSCBCSCCEEETTTTEEEECB
T ss_pred CCceEEEEcCCCCEEEEEecCCceeeee------------------------eecccccccccceeecccccCcEEEEec
Confidence 2335556667787777776544221100 0001222233444556677777555443
Q ss_pred ecCCeEEEEecCCCceeccCC-------------CCCCeEEEEeCCCCCeEEEEecC---------CcEEEEEcCCceEE
Q 040987 372 GKEGVLVVWQLDTGKKKFLPR-------------IGSPLLYFTESPDPSLSSISCAD---------NQVHLLKMPSMEII 429 (762)
Q Consensus 372 ~~dg~i~~wd~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d---------~~i~i~d~~~~~~~ 429 (762)
.+.+++++...+....... .......+++++++..+++...+ ..+.+||..+++.+
T Consensus 230 --~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~ 307 (368)
T d1mdah_ 230 --ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS 307 (368)
T ss_dssp --SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred --CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence 3456666655544321111 11223457888998887765432 25899999999888
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCE--EEEeecCceEEEEEcCCCCceeeEEe
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGL--VALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
..+... ..+.+++|+|||+. ++++..++.|++||..+++.+.++..
T Consensus 308 ~~~~~~-----------~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~ 355 (368)
T d1mdah_ 308 GPISNG-----------HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL 355 (368)
T ss_dssp ECCEEE-----------EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred EEecCC-----------CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence 776532 46788999999974 45566789999999999987776653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=4.5e-15 Score=150.33 Aligned_cols=293 Identities=10% Similarity=-0.098 Sum_probs=178.1
Q ss_pred CcceeEEE-EecCCCe--EEEEecCCcceeee-ecCcccccCCceeecCCCEEEEEe-----------CCEEEEEEcccc
Q 040987 40 RSRSFIFA-VARSSGL--CRTAEYPAVNSKMI-RGGRSYVSSPPAFSNDVKRLLVCT-----------SNTVSIFSTSTG 104 (762)
Q Consensus 40 ~~~~~~~a-~~~~~g~--i~~~~~~~~~~~~~-~~h~~~v~~~~~~s~dg~~la~~~-----------~~~i~iwd~~~~ 104 (762)
..+..+++ ..+.+|. +.++|..+++.+.. .++... . ++|||||++|++.+ ++.|.+||..++
T Consensus 30 ~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~-~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~ 106 (368)
T d1mdah_ 30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--L-AVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF 106 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--E-EEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC
T ss_pred CCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--c-ceECCCCCEEEEEcccCccccccccCCeEEEEECCCC
Confidence 33444444 3455555 56668887776543 444433 3 88999999999875 357999999999
Q ss_pred eEEeeecCCcc-------ceeEEEEeCCCCcccceeeeEEeee-cCCeEEEEeCCCcceEEEEEeccceEEEeecccccC
Q 040987 105 LQISSLEGHKA-------PVTTVIVVPASTPATKILSYCWTAS-LDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQ 176 (762)
Q Consensus 105 ~~~~~l~~h~~-------~V~~v~~s~~~~~~~~l~~~l~s~s-~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~ 176 (762)
+++..+..|.. ....++|+||| ++|+.+. .++++.+||+.+++.+..+..+.....
T Consensus 107 ~~~~~i~~p~~~~~~~g~~p~~~a~SpDG-------k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--------- 170 (368)
T d1mdah_ 107 LPIADIELPDAPRFSVGPRVHIIGNCASS-------ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--------- 170 (368)
T ss_dssp CEEEEEEETTSCSCCBSCCTTSEEECTTS-------SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC---------
T ss_pred cEeeeecCCccceecccCCccceEECCCC-------CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE---------
Confidence 99988764432 23468999999 4555554 679999999999998887764321100
Q ss_pred CcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE-eC
Q 040987 177 PAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR-KQ 255 (762)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~-~~ 255 (762)
.+.+....+++++||+.+... .+
T Consensus 171 --------------------------------------------------------~~~~~~~~v~~~~Dg~~~~~~~~~ 194 (368)
T d1mdah_ 171 --------------------------------------------------------HPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp --------------------------------------------------------EEEETTEEECCCCTTSCEEEECCS
T ss_pred --------------------------------------------------------ccCCCceEEEEcCCCCEEEEEecC
Confidence 001122334455555544322 22
Q ss_pred CeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCC
Q 040987 256 RKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERP 335 (762)
Q Consensus 256 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (762)
+....|.... .....+...+....+.+++..+.+. .+.+.+++...+...........
T Consensus 195 ~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~----------- 252 (368)
T d1mdah_ 195 APAAAGIVGA---------QCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGN----------- 252 (368)
T ss_dssp SCCCCEECCC---------CSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSS-----------
T ss_pred Cceeeeeeec---------ccccccccceeecccccCcEEEEec--CCCEEEEeecCCceEEEeecccc-----------
Confidence 2222221111 1122334455567778887665543 45566777655433221100000
Q ss_pred CcccCCccccceeeeccccceeEEEEecCCCEEEEEecC---------CeEEEEecCCCceeccCCCCCCeEEEEeCCCC
Q 040987 336 GVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE---------GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP 406 (762)
Q Consensus 336 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d---------g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~ 406 (762)
.... ............+++++++..++....+ ..|.+||..+++..........+..++|+|||
T Consensus 253 -----~~~~--~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG 325 (368)
T d1mdah_ 253 -----ESGR--KADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDG 325 (368)
T ss_dssp -----CTHH--HHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSS
T ss_pred -----ccee--eeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCC
Confidence 0000 0000112223457889998887765322 36999999999987666666778899999999
Q ss_pred Ce--EEEEecCCcEEEEEcCCceEEEEEccCC
Q 040987 407 SL--SSISCADNQVHLLKMPSMEIIRSISGIK 436 (762)
Q Consensus 407 ~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 436 (762)
+. ++++..++.|++||..+++.+..+....
T Consensus 326 ~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 326 ASDNYANSAGTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp SCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred CEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence 74 3455568899999999999999887543
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.64 E-value=4.5e-17 Score=162.40 Aligned_cols=297 Identities=11% Similarity=0.001 Sum_probs=185.1
Q ss_pred ccCcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeee-ccccce
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH-WHPSEV 356 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 356 (762)
.|........++|||++|++.. .++.|.++|+.+.+... .+. .+...+
T Consensus 69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~------------------------------ii~iP~g~gp 118 (441)
T d1qnia2 69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDK------------------------------ITHIPNVQAI 118 (441)
T ss_dssp BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE------------------------------EEECTTCCCE
T ss_pred ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEee------------------------------EEecCCCCCc
Confidence 3444555666789999997654 57899999998775432 222 345678
Q ss_pred eEEEEecCCCE--EEEEecCC-----------------eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC-
Q 040987 357 SVLIFSSDGAY--LYSGGKEG-----------------VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN- 416 (762)
Q Consensus 357 ~~~~~s~~g~~--l~s~~~dg-----------------~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~- 416 (762)
..++|+|+|+. ++..+.+. .+..+|..+.+.............+.++|||+++++.+.+.
T Consensus 119 hgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse 198 (441)
T d1qnia2 119 HGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSE 198 (441)
T ss_dssp EEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTT
T ss_pred cceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCC
Confidence 89999999984 44333321 23557777777655444556678899999999999887653
Q ss_pred cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 417 QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 417 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
.+..++..+......+... .....++++|+|+++..+ .++.+.+++....+.+..++..
T Consensus 199 ~~~~id~~t~~~~d~i~v~-----------n~p~~~~~~~dGk~~~v~-~~~v~vvd~~~~~~v~~~IPvg--------- 257 (441)
T d1qnia2 199 RAVDLAGTMRNDRDWVVVF-----------NVERIAAAVKAGNFKTIG-DSKVPVVDGRGESEFTRYIPVP--------- 257 (441)
T ss_dssp CCSSHHHHTCSSBCEEEEE-----------EHHHHHHHHHTTCCBCCT-TCCCCEEECSSSCSSEEEECCB---------
T ss_pred ceEEEeccCcceEEEEEeC-----------CccceEEEecCCCEEEeC-CCCcEEEEcccCCceEEEEeCC---------
Confidence 3333333332222211111 122345667899977654 4567777777666666665442
Q ss_pred cceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCc--------eeEEEEEeecCCCCCceEEEEEcCCCC
Q 040987 497 VTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNK--------EFTLSTIVYEPHRDAGISAVAFHPNRR 568 (762)
Q Consensus 497 ~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~h~~~~v~~~~~spd~~ 568 (762)
.....++++|||+++++++. .+++|.+||+++... ...+.. +....-.....+|+++|.
T Consensus 258 --ksPhGv~vSPDGkyl~~~~~--------~~~tvsv~d~~k~~~~~~~~~~~~~~~~~---~~~~glgplh~~fd~~g~ 324 (441)
T d1qnia2 258 --KNPHGLNTSPDGKYFIANGK--------LSPTVSVIAIDKLDDLFEDKIELRDTIVA---EPELGLGPLHTTFDGRGN 324 (441)
T ss_dssp --SSCCCEEECTTSCEEEEECT--------TSSBEEEEEGGGHHHHTTTSSCGGGGEEE---CCBCCSCEEEEEECSSSE
T ss_pred --CCccCceECCCCCEEEEeCC--------cCCcEEEEEeehhhhHhhccCCcceEEEe---ecccccCcccceecCCce
Confidence 22457899999999887763 788999999875321 011111 110012334568999999
Q ss_pred eEEEEeCCCcEEEEEccccccccccc--CCcee--eeeecccCCCCeEEEEEcCCCcEEEEEc----CC----------e
Q 040987 569 AAVSSSYGGDFKVWICNDELQQKDLQ--SSGWS--CHAVGSYKKKAMTAAAFSADGSVLAVAA----ET----------V 630 (762)
Q Consensus 569 ~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~--~~~~~~~~~~~i~~~~~s~dg~~la~~~----d~----------~ 630 (762)
.+.+...|..|..|++........-. ...+. ...-..+|...+.+.+++|||+||++++ |. .
T Consensus 325 ~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~~~g~~~~~~ 404 (441)
T d1qnia2 325 AYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFLPVGPLHPEN 404 (441)
T ss_dssp EEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSCCCSSSCCEE
T ss_pred EEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCcCCCCCCCcc
Confidence 88888899999999986332111100 00111 0011235666677788999999999994 42 3
Q ss_pred EEEEeCCCC
Q 040987 631 ITLWDPDRN 639 (762)
Q Consensus 631 i~iwd~~~~ 639 (762)
-++.|+...
T Consensus 405 ~q~~~i~~~ 413 (441)
T d1qnia2 405 DQLIDISGE 413 (441)
T ss_dssp EEEEECSSS
T ss_pred ceeEEecCC
Confidence 467777643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.47 E-value=4.2e-11 Score=119.52 Aligned_cols=294 Identities=11% Similarity=0.049 Sum_probs=169.2
Q ss_pred EEEEec--CCeEEEE--ecCCCceec----cCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC-ceEEEEEccCCCC
Q 040987 368 LYSGGK--EGVLVVW--QLDTGKKKF----LPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS-MEIIRSISGIKLP 438 (762)
Q Consensus 368 l~s~~~--dg~i~~w--d~~~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~ 438 (762)
|+.|+. .+.|+.+ |.++++... .......+..++++++++.|+++.. +.+..|.+.. +....... +..
T Consensus 5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~-~~~- 81 (365)
T d1jofa_ 5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEAS-HPI- 81 (365)
T ss_dssp EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEE-EEC-
T ss_pred EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEee-ecC-
Confidence 445542 3456544 444444321 2233445667999999999988754 5677776654 22322221 110
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEE--ee-cCceEEEEEcCCCCceee-------------EEeecccccCCCCcceeEE
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVAL--RA-ENYCIHFYSLLDDRGISE-------------VQVCERNHQPGDDVTVVVT 502 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~--~~-~dg~i~i~d~~~~~~~~~-------------~~~~~~~~~~~~~~~~~v~ 502 (762)
......++++++++.+.+ +. ..+.+..+.+........ .....+.. ...+.
T Consensus 82 -------~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~------~~h~h 148 (365)
T d1jofa_ 82 -------GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE------NTGIH 148 (365)
T ss_dssp -------CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT------TCCEE
T ss_pred -------CCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCC------CCcce
Confidence 034467788888885433 22 235555554432211111 11111111 23478
Q ss_pred EEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEE
Q 040987 503 LVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKV 581 (762)
Q Consensus 503 ~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~i 581 (762)
+++|+|||+++++++. ....|.+|+.................. ....+.++|+|+++++.+.. .+++|.+
T Consensus 149 ~v~~sPdG~~l~v~d~--------g~d~v~~~~~~~~g~~~~~~~~~~~~~-g~gPr~i~f~pdg~~~yv~~e~~~~V~v 219 (365)
T d1jofa_ 149 GMVFDPTETYLYSADL--------TANKLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHPTGNYLYALMEAGNRICE 219 (365)
T ss_dssp EEEECTTSSEEEEEET--------TTTEEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred EEEECCCCCEEEEeeC--------CCCEEEEEEccCCCceeeccceeecCC-CCceEEEEECCCCceEEEeccCCCEEEE
Confidence 9999999999998873 456889998776554443333322333 56788999999999886665 5688999
Q ss_pred EEcccccccccccCCceeee--------eecccCCCCeEEEEEcCCCcEEEEEc--C-----CeEEEEeCCCC-eEEE--
Q 040987 582 WICNDELQQKDLQSSGWSCH--------AVGSYKKKAMTAAAFSADGSVLAVAA--E-----TVITLWDPDRN-VLVA-- 643 (762)
Q Consensus 582 wd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~~~~s~dg~~la~~~--d-----~~i~iwd~~~~-~~~~-- 643 (762)
|++..+.............. ............+.++|||++|+++. + ..|..|++... ....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~ 299 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQL 299 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEE
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEe
Confidence 99976654322110000000 00011223456789999999998874 3 34777877643 2111
Q ss_pred Ee---ccccCceeEEEEeC-CCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 644 VI---GETLTPIMNMSFVG-SSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 644 ~l---~~~~~~v~~~~~s~-dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
.+ ......-.+++++| +|++|+.+..+. +.|.+|+++...+..
T Consensus 300 ~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s-~~v~v~~~~~~~l~~ 346 (365)
T d1jofa_ 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQE-GWLEIYRWKDEFLHR 346 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSS-CEEEEEEEETTEEEE
T ss_pred EeeEEEcCCCCccEEEecCCCCCEEEEEeCCC-CeEEEEEEeCCcCcE
Confidence 11 11223357799998 899998886553 359999887665443
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.45 E-value=2.2e-10 Score=114.21 Aligned_cols=174 Identities=9% Similarity=-0.041 Sum_probs=110.5
Q ss_pred CceeeEEEeCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCC
Q 040987 447 GLCRDIAFNHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGI 525 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~ 525 (762)
..+.++.|+|||++++++.. ...|.+|+......+.......... .......++|+|+++++.+...
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~-----~g~gPr~i~f~pdg~~~yv~~e------- 212 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-----PGDHPRWVAMHPTGNYLYALME------- 212 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-----TTCCEEEEEECTTSSEEEEEET-------
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecC-----CCCceEEEEECCCCceEEEecc-------
Confidence 35689999999998888753 4578888876544333222211100 1356899999999999877763
Q ss_pred CceeEEEEEEecCCCceeEEE--EEeec------------CCCCCceEEEEEcCCCCeEEEEeC-C-----CcEEEEEcc
Q 040987 526 GSLVCLKFWVSGTQNKEFTLS--TIVYE------------PHRDAGISAVAFHPNRRAAVSSSY-G-----GDFKVWICN 585 (762)
Q Consensus 526 ~~d~~i~iwd~~~~~~~~~~~--~~~~~------------~h~~~~v~~~~~spd~~~l~~~~~-d-----g~i~iwd~~ 585 (762)
.+++|.+|++.......... ..... .+ ......+.++|||++|+++.. + +.|..|++.
T Consensus 213 -~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~ 290 (365)
T d1jofa_ 213 -AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKG-LYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp -TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSB-SEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred -CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccc-cCCccceEECCCCCEEEEEcccCCCccceEEEEEEec
Confidence 67899999998765432221 11110 11 223567899999999887743 1 237777765
Q ss_pred cccccccccCCceeeeeecccCCCCeEEEEEcC-CCcEEEEEc--CCeEEEEeCCCC
Q 040987 586 DELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSA-DGSVLAVAA--ETVITLWDPDRN 639 (762)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-dg~~la~~~--d~~i~iwd~~~~ 639 (762)
........ .+.............++++| +|++|++++ ++.|.+|+++..
T Consensus 291 ~~g~~~~~-----~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 291 DCGSIEKQ-----LFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCEEEE-----EEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCceeeE-----eEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 43222111 01111122345567799998 899998886 799999987654
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.4e-10 Score=109.09 Aligned_cols=234 Identities=12% Similarity=0.077 Sum_probs=152.4
Q ss_pred eEEEEecCCcceeeeecCcccccCCceeecCCCEEEEEeC----CEEEEEEcccceEEeeecCCccceeEEEEeCCCCcc
Q 040987 54 LCRTAEYPAVNSKMIRGGRSYVSSPPAFSNDVKRLLVCTS----NTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPA 129 (762)
Q Consensus 54 ~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~dg~~la~~~~----~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~ 129 (762)
.|.+.|....+...+..+...+.. .+|||||++||+..+ ..+.+.+..++.. ..+..+.+.+....|+|+|+
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~~~~s-P~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~-- 95 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQPLMS-PAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGS-- 95 (269)
T ss_dssp EEEEEETTSCSCEEEEEESSCEEE-EEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSS--
T ss_pred EEEEEcCCCCCcEEEecCCCceee-eEECCCCCEEEEEEeeccCcceeeeecccCce-eEEeeeecccccceecCCCC--
Confidence 578889998888888888888886 999999999999873 4677888766554 44556778889999999995
Q ss_pred cceeeeEEeeecCCeEEEEeCCCcceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCC
Q 040987 130 TKILSYCWTASLDGTIKYWDFSVPELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRP 209 (762)
Q Consensus 130 ~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (762)
.+++....++...++.........
T Consensus 96 ----~i~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 119 (269)
T d2hqsa1 96 ----KLAFALSKTGSLNLYVMDLASGQI---------------------------------------------------- 119 (269)
T ss_dssp ----EEEEEECTTSSCEEEEEETTTCCE----------------------------------------------------
T ss_pred ----eeeEeeecCCccceeecccccccc----------------------------------------------------
Confidence 333333333332222211111000
Q ss_pred CCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE--eC--CeEEEEEccCchhhhheeeeeeeccCcCeE
Q 040987 210 NTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR--KQ--RKLLIWKVPDVEAERVVMRKITLHHTKKLT 285 (762)
Q Consensus 210 g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~--~~--~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~ 285 (762)
..............++++++.+... .+ ..|.+.++..+.. .....+.....
T Consensus 120 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~------~~~~~~~~~~~ 174 (269)
T d2hqsa1 120 -------------------RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP------QRITWEGSQNQ 174 (269)
T ss_dssp -------------------EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC------EECCCSSSEEE
T ss_pred -------------------eeeeeccccccccccccccccceecccccCCceEeeeecccccc------eeeeccccccc
Confidence 0111112223345677777766532 23 3566667666554 23345566778
Q ss_pred EEEEcCCCcEEEEeecC-CeEEEE--eccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 286 VLAFHPTQRIVAAGDVT-GRILIW--RGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 286 ~~~~sp~~~~l~~~~~d-g~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
...|+|+++.++..+.+ +...+| +..++. ..+..+........|+
T Consensus 175 ~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~--------------------------------~~~~~~~~~~~~p~~S 222 (269)
T d2hqsa1 175 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG--------------------------------VQVLSSTFLDETPSLA 222 (269)
T ss_dssp EEEECTTSSEEEEEEECSSCEEEEEEETTTCC--------------------------------EEECCCSSSCEEEEEC
T ss_pred ccccccccceeEEEeecCCceeeeEeeccccc--------------------------------ceEeecCccccceEEC
Confidence 88999999988876554 344444 433221 1222344556778999
Q ss_pred cCCCEEEEEecC---CeEEEEecCCCceeccCCCCCCeEEEEeCC
Q 040987 363 SDGAYLYSGGKE---GVLVVWQLDTGKKKFLPRIGSPLLYFTESP 404 (762)
Q Consensus 363 ~~g~~l~s~~~d---g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~ 404 (762)
|||+.|+..+.. ..|++++++.+....+......+...+|||
T Consensus 223 PDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP 267 (269)
T d2hqsa1 223 PNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSP 267 (269)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECC
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCC
Confidence 999999866543 578999999988888877778888899998
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-09 Score=112.54 Aligned_cols=377 Identities=11% Similarity=0.081 Sum_probs=214.5
Q ss_pred EEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee---------cCCeEEEEecc
Q 040987 241 ITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD---------VTGRILIWRGF 311 (762)
Q Consensus 241 ~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~---------~dg~v~vw~~~ 311 (762)
..|.+|+.++....++.|.+||+.+++.. .+........-.+....||||+++++... ..+.+.++|+.
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~ 99 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP 99 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEE--EEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence 35788888776667889999999887753 11111112234677889999999988763 35778899987
Q ss_pred CCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC
Q 040987 312 GDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~ 391 (762)
++.... +.........+....|||||+.||... ++.|++.+..++....+.
T Consensus 100 ~~~~~~----------------------------l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt 150 (465)
T d1xfda1 100 HGDPQS----------------------------LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVV 150 (465)
T ss_dssp SCCCEE----------------------------CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEE
T ss_pred CCceee----------------------------ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEe
Confidence 765322 111122334456688999999999876 578999888777654332
Q ss_pred CC--CCC-----------------eEEEEeCCCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceee
Q 040987 392 RI--GSP-----------------LLYFTESPDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRD 451 (762)
Q Consensus 392 ~~--~~~-----------------v~~~~~s~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 451 (762)
.. ... -..+-|||||++|+.... +..+..+.+... .+... ..+..
T Consensus 151 ~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~------~~~~~---------p~~~~ 215 (465)
T d1xfda1 151 STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTY------TGSIY---------PTVKP 215 (465)
T ss_dssp CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCC------SSSSS---------CCCEE
T ss_pred cccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccc------ccccc---------ceeee
Confidence 21 111 246779999999998754 334444433210 00000 11222
Q ss_pred EEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEE
Q 040987 452 IAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCL 531 (762)
Q Consensus 452 ~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i 531 (762)
+.+..-|.. .....+.++|+.++......... ... ......+..+.|+|++++++....+ ......+
T Consensus 216 ~~Yp~~G~~----np~~~l~v~d~~~~~~~~~~~~~-~~~---~~~~~y~~~~~W~~d~~~~~~~~nR-----~q~~~~i 282 (465)
T d1xfda1 216 YHYPKAGSE----NPSISLHVIGLNGPTHDLEMMPP-DDP---RMREYYITMVKWATSTKVAVTWLNR-----AQNVSIL 282 (465)
T ss_dssp EECCBTTSC----CCEEEEEEEESSSSCCCEECCCC-CCG---GGSSEEEEEEEESSSSEEEEEEEET-----TSCEEEE
T ss_pred eeccccCCC----CCceeEEEEecCCCcEEEEEecc-CcC---ccccceeeeeEEcCCCeEEEEEEcc-----ccccceE
Confidence 332222211 01135788888766433221111 000 0114457889999999877765432 1144578
Q ss_pred EEEEecCCCceeEEEEEeecCCCCCce----EEEEEcCCCCeEEE--Ee-CCC--cEEEEEccc------ccccccccCC
Q 040987 532 KFWVSGTQNKEFTLSTIVYEPHRDAGI----SAVAFHPNRRAAVS--SS-YGG--DFKVWICND------ELQQKDLQSS 596 (762)
Q Consensus 532 ~iwd~~~~~~~~~~~~~~~~~h~~~~v----~~~~~spd~~~l~~--~~-~dg--~i~iwd~~~------~~~~~~~~~~ 596 (762)
.++|..+++....... .. ...| ....|+|||+.++. .+ .+| .++...+.. +.....+
T Consensus 283 ~~~d~~tg~~~~~~~e----~~-~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~L--- 354 (465)
T d1xfda1 283 TLCDATTGVCTKKHED----ES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI--- 354 (465)
T ss_dssp EEEETTTCCEEEEEEE----EC-SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS---
T ss_pred EEEcCCCCcEEEEEEE----cC-CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEe---
Confidence 8899998876544332 11 2222 34689999986543 22 232 344444322 1111122
Q ss_pred ceeeeeecccCCCCeEE-EEEcCCCcEEE-EEc-C--C--eEEEEeCCCCeEEEEec---cccCceeEEEEeCCCCEEEE
Q 040987 597 GWSCHAVGSYKKKAMTA-AAFSADGSVLA-VAA-E--T--VITLWDPDRNVLVAVIG---ETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 597 ~~~~~~~~~~~~~~i~~-~~~s~dg~~la-~~~-d--~--~i~iwd~~~~~~~~~l~---~~~~~v~~~~~s~dg~~l~s 666 (762)
....-.|.. +.|.++++.|. ++. + + .++-.++..+.....+. .......++.||||+++++-
T Consensus 355 --------T~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~ 426 (465)
T d1xfda1 355 --------TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLL 426 (465)
T ss_dssp --------CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred --------ccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEE
Confidence 112334455 46888887764 343 2 2 34444555443322221 23445779999999999885
Q ss_pred EEcC-CCCeEEEEECCCCceeeEEEEe
Q 040987 667 TSWG-SKPQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 667 ~~~d-~~~~v~vwd~~~~~~~~~~~~~ 692 (762)
.... +...+.+++..+++.+..++..
T Consensus 427 ~~s~~~~P~~~~~~~~~~~~~~~Le~N 453 (465)
T d1xfda1 427 KCEGPGVPMVTVHNTTDKKKMFDLETN 453 (465)
T ss_dssp ECCSSSSCCEEEEETTTCCEEEEEECC
T ss_pred EeecCCCCeEEEEECCCCCEEEEEcCC
Confidence 5432 2224899999999988776543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=4.7e-10 Score=115.23 Aligned_cols=381 Identities=11% Similarity=0.025 Sum_probs=203.4
Q ss_pred ceeecCCCEEEEEeCCEEEEEEcccceEEeeecC---CccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcce
Q 040987 79 PAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEG---HKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPEL 155 (762)
Q Consensus 79 ~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~---h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~ 155 (762)
..|.+|+.++....+|.|.+||+++++....+.. ..-.+....||||+ ++++.... ..++|.-
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~-------~~vl~~~~--~~~~~r~----- 87 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDR-------EYALFSYN--VEPIYQH----- 87 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTS-------SEEEEEES--CCCCSSS-----
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCC-------CeEEEEEc--ccceeEe-----
Confidence 5688898887665678999999998875443433 23467888999999 44443321 1112211
Q ss_pred EEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccce-eeecc
Q 040987 156 LKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGG-VTLAE 234 (762)
Q Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~-~~~~~ 234 (762)
+..+.+.++|+.++....- .....
T Consensus 88 -------------------------------------------------------s~~~~~~i~d~~~~~~~~l~~~~~~ 112 (465)
T d1xfda1 88 -------------------------------------------------------SYTGYYVLSKIPHGDPQSLDPPEVS 112 (465)
T ss_dssp -------------------------------------------------------CCCSEEEEEESSSCCCEECCCTTCC
T ss_pred -------------------------------------------------------eccccEEEEEccCCceeeccCccCC
Confidence 1223444555554443311 11122
Q ss_pred CCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcC-----------------eEEEEEcCCCcEEE
Q 040987 235 MKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKK-----------------LTVLAFHPTQRIVA 297 (762)
Q Consensus 235 ~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~sp~~~~l~ 297 (762)
...+....|||||+.||...++.|.+.+..+++.. +....+..+. -.++.|||||++||
T Consensus 113 ~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~----~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ia 188 (465)
T d1xfda1 113 NAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAI----RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (465)
T ss_dssp SCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCE----EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred ccccceeeeccCCceEEEEecceEEEEecCCCceE----EEecccCcceeeccccchhhhhhhccccceEEECCCCCeEE
Confidence 34456678999999999888999999988776543 1111122111 24778999999999
Q ss_pred Eeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCe
Q 040987 298 AGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGV 376 (762)
Q Consensus 298 ~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~ 376 (762)
.... +..|..+.+.... ......+..+.+..-|..- ....
T Consensus 189 f~~~D~s~V~~~~~~~~~-----------------------------------~~~~p~~~~~~Yp~~G~~n----p~~~ 229 (465)
T d1xfda1 189 YAAINDSRVPIMELPTYT-----------------------------------GSIYPTVKPYHYPKAGSEN----PSIS 229 (465)
T ss_dssp EEEEECTTSCEEEECCCS-----------------------------------SSSSCCCEEEECCBTTSCC----CEEE
T ss_pred EEEecccccceeeccccc-----------------------------------ccccceeeeeeccccCCCC----Ccee
Confidence 8753 3445444432110 0000112222222112110 1125
Q ss_pred EEEEecCCCceec--cCC-----CCCCeEEEEeCCCCCeEEEEecC----CcEEEEEcCCceEEEEEccCCCCCCCCCcc
Q 040987 377 LVVWQLDTGKKKF--LPR-----IGSPLLYFTESPDPSLSSISCAD----NQVHLLKMPSMEIIRSISGIKLPCPLPEEY 445 (762)
Q Consensus 377 i~~wd~~~~~~~~--~~~-----~~~~v~~~~~s~~~~~l~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 445 (762)
+.++|++++.... ... ...-+..+.|+++++.++..... ..+.++|..+++....+...... ..
T Consensus 230 l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~--wv--- 304 (465)
T d1xfda1 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEA--WL--- 304 (465)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSS--CC---
T ss_pred EEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCc--eE---
Confidence 7778887665421 111 12236778999999876665432 25888999998876665433210 00
Q ss_pred cCceeeEEEeCCCCEEEEe--e-cC--ceEEEEEcCC------CCceeeEEeecccccCCCCcceeEEEE-EEecCCCeE
Q 040987 446 KGLCRDIAFNHDGGLVALR--A-EN--YCIHFYSLLD------DRGISEVQVCERNHQPGDDVTVVVTLV-ALSQDGSLM 513 (762)
Q Consensus 446 ~~~v~~~~~s~~~~~l~~~--~-~d--g~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~sp~g~~l 513 (762)
+..-....|++||+.++.. + .+ +.++.+++.. +.....+.. . .-.|..+ .|+++++.+
T Consensus 305 ~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~--G--------~w~V~~i~~~d~~~~~v 374 (465)
T d1xfda1 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS--G--------DWDVTKILAYDEKGNKI 374 (465)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC--S--------SSCEEEEEEEETTTTEE
T ss_pred eccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEecc--C--------CceEEEEEEEcCCCCEE
Confidence 0011346899999865431 1 22 2344443321 111111110 0 3345554 689988877
Q ss_pred EEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCC---CcEEEEEccccccc
Q 040987 514 STVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYG---GDFKVWICNDELQQ 590 (762)
Q Consensus 514 ~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~d---g~i~iwd~~~~~~~ 590 (762)
...+.. +. .....+.-.++........+.+. ... .....++.|||++++++..... -.+.+++..+++.+
T Consensus 375 yF~a~~---~~-p~~~hly~v~l~g~~~~~~lt~~--~~~-~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~ 447 (465)
T d1xfda1 375 YFLSTE---DL-PRRRQLYSANTVGNFNRQCLSCD--LVE-NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKM 447 (465)
T ss_dssp EEEESS---SC-TTCCEEEEECSSTTCCCBCSSTT--SSS-SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEE
T ss_pred EEEEeC---CC-CCceEEEEEECCCCCcceeeccc--cCC-CCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEE
Confidence 654421 00 12334444455544333222110 122 3456789999999998855433 34667776666555
Q ss_pred ccc
Q 040987 591 KDL 593 (762)
Q Consensus 591 ~~~ 593 (762)
..+
T Consensus 448 ~~L 450 (465)
T d1xfda1 448 FDL 450 (465)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.7e-09 Score=103.05 Aligned_cols=234 Identities=12% Similarity=0.046 Sum_probs=150.7
Q ss_pred cEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEe----CCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEc
Q 040987 215 RICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRK----QRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFH 290 (762)
Q Consensus 215 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~----~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s 290 (762)
.|.+.|.+..... .+..+...+...+|||||+.||... ...+.+.+..++.. .....+.+......|+
T Consensus 20 ~l~i~d~dG~~~~--~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~s 91 (269)
T d2hqsa1 20 ELRVSDYDGYNQF--VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV------RQVASFPRHNGAPAFS 91 (269)
T ss_dssp EEEEEETTSCSCE--EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE------EEEECCSSCEEEEEEC
T ss_pred EEEEEcCCCCCcE--EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCce------eEEeeeecccccceec
Confidence 6888887644443 4555677889999999999999542 34577777776654 3455677888999999
Q ss_pred CCCcEEEEeec-CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEE
Q 040987 291 PTQRIVAAGDV-TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLY 369 (762)
Q Consensus 291 p~~~~l~~~~~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 369 (762)
|+|+.++.... ++...++....... ................++++++.++
T Consensus 92 pdg~~i~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (269)
T d2hqsa1 92 PDGSKLAFALSKTGSLNLYVMDLASG-----------------------------QIRQVTDGRSNNTEPTWFPDSQNLA 142 (269)
T ss_dssp TTSSEEEEEECTTSSCEEEEEETTTC-----------------------------CEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeeeEeeecCCccceeecccccc-----------------------------cceeeeeccccccccccccccccce
Confidence 99998886543 33333332211110 0111222333344556777776655
Q ss_pred EEe-cCC--eEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCC---cEEEEEcCCceEEEEEccCCCCCCCCC
Q 040987 370 SGG-KEG--VLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADN---QVHLLKMPSMEIIRSISGIKLPCPLPE 443 (762)
Q Consensus 370 s~~-~dg--~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~ 443 (762)
..+ .++ .|.+.++..+................|+|+++.++..+.++ .+.+.+...+... .+. ..
T Consensus 143 ~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~------- 213 (269)
T d2hqsa1 143 FTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-ST------- 213 (269)
T ss_dssp EEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC-CS-------
T ss_pred ecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCceeeeEeecccccce-Eee-cC-------
Confidence 544 333 57777888877766666677788899999999988876654 4555565554432 222 22
Q ss_pred cccCceeeEEEeCCCCEEEEeecC---ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEec
Q 040987 444 EYKGLCRDIAFNHDGGLVALRAEN---YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQ 508 (762)
Q Consensus 444 ~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 508 (762)
.......|+|||+.|+..+.. ..|+++++..+.. ..+... ...+...+|||
T Consensus 214 ---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~----------~g~~~~p~WSP 267 (269)
T d2hqsa1 214 ---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPAT----------DGQVKFPAWSP 267 (269)
T ss_dssp ---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCS----------SSEEEEEEECC
T ss_pred ---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCC----------CCcEEeEEeCC
Confidence 455678999999999876643 5788999976543 222221 45577888988
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=5.6e-09 Score=100.96 Aligned_cols=239 Identities=15% Similarity=0.079 Sum_probs=155.2
Q ss_pred CeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEe
Q 040987 283 KLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFS 362 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 362 (762)
.+..++++|||+++++...+++|..|+..+.. ..+......+.+++|+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~--------------------------------~~~~~~~~~~~gla~~ 76 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--------------------------------QIHATVEGKVSGLAFT 76 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCE--------------------------------EEEEECSSEEEEEEEC
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE--------------------------------EEEEcCCCCcceEEEc
Confidence 57789999999999998889999888865432 2333455678999999
Q ss_pred cCCCEEEEEecCCeEEEEecCCCce--e--ccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCC
Q 040987 363 SDGAYLYSGGKEGVLVVWQLDTGKK--K--FLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLP 438 (762)
Q Consensus 363 ~~g~~l~s~~~dg~i~~wd~~~~~~--~--~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 438 (762)
+||+++++...++.+..++...... . ...........+++.++++++++...++.+..++...+............
T Consensus 77 ~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 156 (302)
T d2p4oa1 77 SNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLA 156 (302)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccc
Confidence 9999888887888888887654332 2 22234456788999999998888878889999998876544333222111
Q ss_pred CCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEee
Q 040987 439 CPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDI 518 (762)
Q Consensus 439 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~ 518 (762)
.............+.++.+ .++++.+..+.|+.++............... ......++++++|+++++..
T Consensus 157 ~~~~~~~~~~~ngi~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--------~~~pdgia~d~dG~l~va~~- 226 (302)
T d2p4oa1 157 RSNSESVFPAANGLKRFGN-FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--------QTNIDDFAFDVEGNLYGATH- 226 (302)
T ss_dssp CSSTTCCSCSEEEEEEETT-EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--------SCCCSSEEEBTTCCEEEECB-
T ss_pred eeeccCcccccccccccCC-ceeeecCCCCeEEeccccccccccccccccC--------CCCCcceEECCCCCEEEEEc-
Confidence 1111111123455666543 3455556778899898876544333222111 22345799999999777765
Q ss_pred eccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEE---cCCCCeEEEEeCC
Q 040987 519 KLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAF---HPNRRAAVSSSYG 576 (762)
Q Consensus 519 ~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~---spd~~~l~~~~~d 576 (762)
.++.|..++...... .+.. .... -...++++| ++|++.|+.++..
T Consensus 227 --------~~~~V~~i~p~G~~~--~~~~--~~~~-~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 227 --------IYNSVVRIAPDRSTT--IIAQ--AEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --------TTCCEEEECTTCCEE--EEEC--GGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --------CCCcEEEECCCCCEE--EEEe--cCCC-CCCceEEEEcCCCCCCCEEEEECCC
Confidence 667788887654321 1111 0112 346789999 6788888766543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.17 E-value=2.8e-09 Score=103.17 Aligned_cols=239 Identities=10% Similarity=0.048 Sum_probs=155.4
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCC--ceEEEEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPS--MEIIRSI 432 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~ 432 (762)
.+..++++|||+++++...+++|+.|+.. ++...+......+.++++++||+++++...++.+..++... +......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 107 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL 107 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence 47789999999999998889999999866 44545556667899999999999988888888888887654 2222222
Q ss_pred ccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCe
Q 040987 433 SGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSL 512 (762)
Q Consensus 433 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~ 512 (762)
.... ......+++.++++++++.+.++.+..++...+.........................+.++ +..
T Consensus 108 ~~~~---------~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~ 176 (302)
T d2p4oa1 108 TLPD---------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNF 176 (302)
T ss_dssp ECTT---------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTE
T ss_pred ccCC---------ccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCc
Confidence 1111 14578899999999988888888999888876643222111101000001112334555554 444
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEccccccccc
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKD 592 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~ 592 (762)
+..+.. ..+.|..++............. .. ......++++++|+++++...++.|..++.........
T Consensus 177 l~~~~~--------~~~~i~~~~~~~~~~~~~~~~~---~~-~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~ 244 (302)
T d2p4oa1 177 LYVSNT--------EKMLLLRIPVDSTDKPGEPEIF---VE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIA 244 (302)
T ss_dssp EEEEET--------TTTEEEEEEBCTTSCBCCCEEE---EE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEE
T ss_pred eeeecC--------CCCeEEeccccccccccccccc---cC-CCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEE
Confidence 444432 6678888888765443322211 11 23456799999999888888888999988764332111
Q ss_pred ccCCceeeeeecccCCCCeEEEEE---cCCCcEEEEEc
Q 040987 593 LQSSGWSCHAVGSYKKKAMTAAAF---SADGSVLAVAA 627 (762)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~i~~~~~---s~dg~~la~~~ 627 (762)
. ....-...++++| ++|++.|.+++
T Consensus 245 ~----------~~~~~~~pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 245 Q----------AEQGVIGSTAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp C----------GGGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred e----------cCCCCCCceEEEEcCCCCCCCEEEEEC
Confidence 1 1123456789999 77888887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.14 E-value=6.8e-08 Score=93.25 Aligned_cols=253 Identities=10% Similarity=0.006 Sum_probs=156.8
Q ss_pred ccCcCeEEEEEcCCCcEEEEeec-------CCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeec
Q 040987 279 HHTKKLTVLAFHPTQRIVAAGDV-------TGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHW 351 (762)
Q Consensus 279 ~~~~~v~~~~~sp~~~~l~~~~~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (762)
..-.....++|.|+|++.++... +|.|..||..++....... .....
T Consensus 15 ~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~--------------------------~~~~~ 68 (314)
T d1pjxa_ 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK--------------------------PEVNG 68 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC--------------------------CEETT
T ss_pred cCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEEC--------------------------Ccccc
Confidence 33445778999999997765322 4678888887664321000 00111
Q ss_pred cccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccCCC-C----CCeEEEEeCCCCCeEEEEec------------
Q 040987 352 HPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLPRI-G----SPLLYFTESPDPSLSSISCA------------ 414 (762)
Q Consensus 352 h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~~~-~----~~v~~~~~s~~~~~l~~~~~------------ 414 (762)
.......++|.++++.++++.....+...+.+.+........ . .....+++.++|++.++-..
T Consensus 69 ~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~ 148 (314)
T d1pjxa_ 69 YGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSM 148 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTT
T ss_pred CCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccccccee
Confidence 122356899999999888888777899999876654332221 1 13567899999987776321
Q ss_pred ---CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-----EEEEeecCceEEEEEcCCCCceeeEEe
Q 040987 415 ---DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-----LVALRAENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 415 ---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~i~d~~~~~~~~~~~~ 486 (762)
.|.+..++.. ++........ .....++|+|++. ++++-+..+.|+.||+.....+.....
T Consensus 149 ~~~~G~v~~~~~d-g~~~~~~~~~-----------~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~ 216 (314)
T d1pjxa_ 149 QEKFGSIYCFTTD-GQMIQVDTAF-----------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKV 216 (314)
T ss_dssp SSSCEEEEEECTT-SCEEEEEEEE-----------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEE
T ss_pred ccCCceEEEEeec-CceeEeeCCc-----------ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeE
Confidence 1234444433 3333333221 2346789999764 444556778899998865443332211
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
..... .........+++.++|++.++.. ..+.|.+||.+++.....+.. . ....++++|.||
T Consensus 217 ~~~~~---~~~~~~pdGiavD~~GnlyVa~~---------~~g~I~~~dp~~g~~~~~i~~-----p-~~~~t~~afg~d 278 (314)
T d1pjxa_ 217 WGHIP---GTHEGGADGMDFDEDNNLLVANW---------GSSHIEVFGPDGGQPKMRIRC-----P-FEKPSNLHFKPQ 278 (314)
T ss_dssp EEECC---CCSSCEEEEEEEBTTCCEEEEEE---------TTTEEEEECTTCBSCSEEEEC-----S-SSCEEEEEECTT
T ss_pred EEEcc---ccccccceeeEEecCCcEEEEEc---------CCCEEEEEeCCCCEEEEEEEC-----C-CCCEEEEEEeCC
Confidence 11000 00023467899999999877765 678999999887766554432 2 346789999999
Q ss_pred CCe-EEEEeCCCcEEEEEcccc
Q 040987 567 RRA-AVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 567 ~~~-l~~~~~dg~i~iwd~~~~ 587 (762)
++. +++.+.++.|...++...
T Consensus 279 ~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 279 TKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SSEEEEEETTTTEEEEEECSSC
T ss_pred CCEEEEEECCCCcEEEEECCCC
Confidence 974 455666788888877543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.11 E-value=9.2e-08 Score=92.73 Aligned_cols=243 Identities=9% Similarity=0.027 Sum_probs=149.2
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec----CceEE
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE----NYCIH 471 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~ 471 (762)
.+..++|.++|++.++-...+.|..|+..+++....+.... .....+++++||+++++... .+.+.
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~----------~~p~gla~~~dG~l~va~~~~~~~~~~i~ 110 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK----------ANPAAIKIHKDGRLFVCYLGDFKSTGGIF 110 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS----------SSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC----------CCeeEEEECCCCCEEEEecCCCccceeEE
Confidence 35678999999876666678889999888766555554333 45688999999987776543 23455
Q ss_pred EEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeec
Q 040987 472 FYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYE 551 (762)
Q Consensus 472 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 551 (762)
..+............... ......+++.++|++.++..... .....+.+..++...... ..+..
T Consensus 111 ~~~~~~~~~~~~~~~~~~--------~~~~nd~~~d~~G~l~vtd~~~~---~~~~~g~v~~~~~dg~~~-~~~~~---- 174 (319)
T d2dg1a1 111 AATENGDNLQDIIEDLST--------AYCIDDMVFDSKGGFYFTDFRGY---STNPLGGVYYVSPDFRTV-TPIIQ---- 174 (319)
T ss_dssp EECTTSCSCEEEECSSSS--------CCCEEEEEECTTSCEEEEECCCB---TTBCCEEEEEECTTSCCE-EEEEE----
T ss_pred EEcCCCceeeeeccCCCc--------ccCCcceeEEeccceeecccccc---cccCcceeEEEeccccee-EEEee----
Confidence 555554433222211111 34578899999998776643110 001234555555544332 22211
Q ss_pred CCCCCceEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CC
Q 040987 552 PHRDAGISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ET 629 (762)
Q Consensus 552 ~h~~~~v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~ 629 (762)
. -...+.++|+||++.|..+ +..+.|+.|++.......... ................|++.++|++.++.. .+
T Consensus 175 -~-~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~---~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g 249 (319)
T d2dg1a1 175 -N-ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPF---GATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG 249 (319)
T ss_dssp -E-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEE---EEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred -c-cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccc---cceeeeccCCccceeeeeEcCCCCEEEEEcCCC
Confidence 1 2345789999999866544 567889999986432211110 000000111123356899999999766665 89
Q ss_pred eEEEEeCCCCeEEEEecc------ccCceeEEEEeCCCCEEEEEEcC
Q 040987 630 VITLWDPDRNVLVAVIGE------TLTPIMNMSFVGSSEYLVATSWG 670 (762)
Q Consensus 630 ~i~iwd~~~~~~~~~l~~------~~~~v~~~~~s~dg~~l~s~~~d 670 (762)
.|.+||. .|+.+..+.. +...+.+++|.+++..+++...|
T Consensus 250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 9999996 5888777643 33357899999988877776654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.07 E-value=2.2e-08 Score=94.21 Aligned_cols=236 Identities=9% Similarity=-0.030 Sum_probs=148.1
Q ss_pred CCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEE-EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEE
Q 040987 395 SPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRS-ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHF 472 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 472 (762)
.....++++++|+..++.. ..+.+..++......... ..+. .....++++++++.+++....+.+++
T Consensus 14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~p~gvav~~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-----------YQPQGLAVDGAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-----------CSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-----------cCceEEEEcCCCCEEEeeeeeceeee
Confidence 3468899999999766654 345666666554322221 1111 34578999999998877777777776
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
++..+......... ......+++.++++++++-. ....+..++.......... ..
T Consensus 83 ~~~~~~~~~~~~~~-----------~~~p~~iavd~~g~i~v~d~---------~~~~~~~~~~~~~~~~~~~-----~~ 137 (260)
T d1rwia_ 83 AAGSNNQTVLPFDG-----------LNYPEGLAVDTQGAVYVADR---------GNNRVVKLAAGSKTQTVLP-----FT 137 (260)
T ss_dssp CTTCSCCEECCCCS-----------CCSEEEEEECTTCCEEEEEG---------GGTEEEEECTTCSSCEECC-----CC
T ss_pred eeeccceeeeeeee-----------eeecccccccccceeEeecc---------ccccccccccccceeeeee-----ec
Confidence 65544432211110 23468899999998777654 4556666666554322211 11
Q ss_pred CCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeE
Q 040987 553 HRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVI 631 (762)
Q Consensus 553 h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i 631 (762)
. .....+++++|+++++++...++.|..+|.......... .........+++.++|+++++.. .+.|
T Consensus 138 ~-~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~-----------~~~~~~p~gi~~d~~g~l~vsd~~~~~i 205 (260)
T d1rwia_ 138 G-LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-----------FTDITAPWGIAVDEAGTVYVTEHNTNQV 205 (260)
T ss_dssp S-CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-----------CSSCCSEEEEEECTTCCEEEEETTTTEE
T ss_pred c-cCCcceeeecCCCCEeeeccccccccccccccceeeeee-----------ccccCCCccceeeeeeeeeeeecCCCEE
Confidence 1 234568999999998888888888999988765433221 12235568899999999887776 7889
Q ss_pred EEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEEC
Q 040987 632 TLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNM 680 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~ 680 (762)
..++...................++++++|.++++-..++. |+..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~r--I~~i~~ 252 (260)
T d1rwia_ 206 VKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDR--VVKLTS 252 (260)
T ss_dssp EEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTE--EEEECC
T ss_pred EEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCE--EEEEeC
Confidence 98887655332222223345678999999987666555443 665543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=99.06 E-value=2.8e-07 Score=88.87 Aligned_cols=248 Identities=11% Similarity=0.073 Sum_probs=156.1
Q ss_pred cceeEEEEecCCCEEEEEec-------CCeEEEEecCCCceeccCC-----CCCCeEEEEeCCCCCeEEEEecCCcEEEE
Q 040987 354 SEVSVLIFSSDGAYLYSGGK-------EGVLVVWQLDTGKKKFLPR-----IGSPLLYFTESPDPSLSSISCADNQVHLL 421 (762)
Q Consensus 354 ~~v~~~~~s~~g~~l~s~~~-------dg~i~~wd~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~i~ 421 (762)
.....++|.++|+..++... +++|..||..++....... .......+++.++++.++++...+.+..+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~ 97 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVV 97 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEE
Confidence 34567899999987765432 4679999998887643221 12346789999999988888877888888
Q ss_pred EcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec---------------CceEEEEEcCCCCceeeEEe
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE---------------NYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------------dg~i~i~d~~~~~~~~~~~~ 486 (762)
+....... .+....... .-.....+++.++|++.++-.. .|.|+.++.. ++ ...+..
T Consensus 98 ~~~g~~~~-~~~~~~~g~-----~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~-~~~~~~ 169 (314)
T d1pjxa_ 98 QTDGTFEE-IAKKDSEGR-----RMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ-MIQVDT 169 (314)
T ss_dssp ETTSCEEE-CCSBCTTSC-----BCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SC-EEEEEE
T ss_pred eCCCcEEE-EEecccccc-----ccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-Cc-eeEeeC
Confidence 87754322 221111000 0023577999999988776422 2345555432 22 222211
Q ss_pred ecccccCCCCcceeEEEEEEecCCC----eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE-eecCCCCCceEEE
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGS----LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI-VYEPHRDAGISAV 561 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~----~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~h~~~~v~~~ 561 (762)
. ......++|+|++. .|.++.. ..+.|..|++.....+...... .+.+........+
T Consensus 170 ~----------~~~pNGi~~~~d~d~~~~~lyv~d~--------~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGi 231 (314)
T d1pjxa_ 170 A----------FQFPNGIAVRHMNDGRPYQLIVAET--------PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM 231 (314)
T ss_dssp E----------ESSEEEEEEEECTTSCEEEEEEEET--------TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred C----------cceeeeeEECCCCCcceeEEEEEee--------cccceEEeeccCccccceeeEEEEccccccccceee
Confidence 1 12356889999875 4555432 6678988888755433222111 1111112345689
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE-c-CCeEEEEeCCC
Q 040987 562 AFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA-A-ETVITLWDPDR 638 (762)
Q Consensus 562 ~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~-~-d~~i~iwd~~~ 638 (762)
++..+|++.++....+.|.+||.+.+.....+. ......++++|.||++.|.+. + +++|...++..
T Consensus 232 avD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~-----------~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 232 DFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-----------CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-----------CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEE-----------CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 999999988888778899999988776544331 234678899999999865554 4 78888888754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=2.5e-07 Score=87.76 Aligned_cols=246 Identities=8% Similarity=0.110 Sum_probs=160.3
Q ss_pred CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCC-EEEEe-ecCceEEEE
Q 040987 396 PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGG-LVALR-AENYCIHFY 473 (762)
Q Consensus 396 ~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~-~~dg~i~i~ 473 (762)
....++++++|+.+++-..++.|++||.+ ++.+..+....... ........+++.++.. .+++. +.++.|..+
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~ 98 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRD----SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY 98 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSST----TCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCc----ccccccccccccccccccceeccCCccccccc
Confidence 35789999999977776677889999966 67776664322111 0112334566666543 33333 344577777
Q ss_pred EcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCC
Q 040987 474 SLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPH 553 (762)
Q Consensus 474 d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h 553 (762)
+.. +.....+... . ......+++.++|+++++.. ..+.+.+++... +....+. ...+
T Consensus 99 ~~~-g~~~~~~~~~---~------~~~p~~~avd~~G~i~v~~~---------~~~~~~~~~~~g-~~~~~~g---~~~~ 155 (279)
T d1q7fa_ 99 NQY-GQFVRKFGAT---I------LQHPRGVTVDNKGRIIVVEC---------KVMRVIIFDQNG-NVLHKFG---CSKH 155 (279)
T ss_dssp CTT-SCEEEEECTT---T------CSCEEEEEECTTSCEEEEET---------TTTEEEEECTTS-CEEEEEE---CTTT
T ss_pred ccc-ccceeecCCC---c------ccccceeccccCCcEEEEee---------ccceeeEeccCC-ceeeccc---cccc
Confidence 753 3333332111 0 34577899999999887765 556777777553 3333332 2344
Q ss_pred CCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeE
Q 040987 554 RDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVI 631 (762)
Q Consensus 554 ~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i 631 (762)
......+++.++++.+++....+.|++||..... ...+. ..+.......+++.++|+++++-. ++.|
T Consensus 156 -~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~-~~~~g---------~~g~~~~P~giavD~~G~i~Vad~~~~~~v 224 (279)
T d1q7fa_ 156 -LEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY-LRQIG---------GEGITNYPIGVGINSNGEILIADNHNNFNL 224 (279)
T ss_dssp -CSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE-EEEES---------CTTTSCSEEEEEECTTCCEEEEECSSSCEE
T ss_pred -ccccceeeeccceeEEeeeccccceeeeecCCce-eeeec---------ccccccCCcccccccCCeEEEEECCCCcEE
Confidence 5678889999999998888888999999976432 22220 123345678999999999777654 5689
Q ss_pred EEEeCCCCeEEEEeccc--cCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCc
Q 040987 632 TLWDPDRNVLVAVIGET--LTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLS 684 (762)
Q Consensus 632 ~iwd~~~~~~~~~l~~~--~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~ 684 (762)
.+|+. +|+.+..+... ......+++.+||.+++ ++.+.. |++|......
T Consensus 225 ~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~--v~~fr~~~~~ 275 (279)
T d1q7fa_ 225 TIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYR--LYIYRYVQLA 275 (279)
T ss_dssp EEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTE--EEEEECSCCC
T ss_pred EEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCe--EEEEEeeeec
Confidence 99995 48777776432 23478899999997554 556665 9999987654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.05 E-value=1.5e-07 Score=88.37 Aligned_cols=194 Identities=10% Similarity=0.052 Sum_probs=125.5
Q ss_pred CceEEEECCCCCEEEEEeCCe-EEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCce
Q 040987 237 EPQVITISSSGKYFGIRKQRK-LLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRT 315 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~~~~-i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~ 315 (762)
.+..++++++|+++++...+. +++++..+... ............+++.++++++++-..+..+..++..+...
T Consensus 58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~------~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~ 131 (260)
T d1rwia_ 58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT------VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ 131 (260)
T ss_dssp SCCCEEECTTCCEEEEETTTEEEEECTTCSCCE------ECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC
T ss_pred CceEEEEcCCCCEEEeeeeeceeeeeeecccee------eeeeeeeeecccccccccceeEeecccccccccccccccee
Confidence 356789999999877765444 44443333221 12222335678999999998777766666777777544321
Q ss_pred eecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceeccC-CCC
Q 040987 316 FATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFLP-RIG 394 (762)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~~-~~~ 394 (762)
.. ... ........++++++|+.+++...++.|..++.+........ ..-
T Consensus 132 ~~-----------------------------~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~ 181 (260)
T d1rwia_ 132 TV-----------------------------LPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI 181 (260)
T ss_dssp EE-----------------------------CCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC
T ss_pred ee-----------------------------eee-cccCCcceeeecCCCCEeeeccccccccccccccceeeeeecccc
Confidence 11 001 11234567899999998888788889999998876554332 334
Q ss_pred CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEE
Q 040987 395 SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYS 474 (762)
Q Consensus 395 ~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 474 (762)
.....+++.++|+++++....+.|..++...... ..+.... . .....++++++|+++++-..++.|+.++
T Consensus 182 ~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~--~-------~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 182 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTG--L-------NTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECCCCS--C-------CCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred CCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEccCC--C-------CCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 5678899999998877776778888887664322 2221111 0 3567899999998777766777777665
Q ss_pred cC
Q 040987 475 LL 476 (762)
Q Consensus 475 ~~ 476 (762)
..
T Consensus 252 ~~ 253 (260)
T d1rwia_ 252 SL 253 (260)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.97 E-value=7.8e-07 Score=84.26 Aligned_cols=180 Identities=12% Similarity=0.163 Sum_probs=120.1
Q ss_pred eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceeecccccccccccccccC
Q 040987 254 KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEE 333 (762)
Q Consensus 254 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (762)
.++.|..++...... .............+++.++|+.+++....+.+.+++.....
T Consensus 91 ~~~~i~~~~~~g~~~-----~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~------------------- 146 (279)
T d1q7fa_ 91 PTHQIQIYNQYGQFV-----RKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV------------------- 146 (279)
T ss_dssp GGCEEEEECTTSCEE-----EEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-------------------
T ss_pred Cccccccccccccce-----eecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-------------------
Confidence 345666666543221 12323445567889999999988877777788888764331
Q ss_pred CCCcccCCccccceee--eccccceeEEEEecCCCEEEEEecCCeEEEEecCCCceecc--CCCCCCeEEEEeCCCCCeE
Q 040987 334 RPGVRDNDDADLCTTW--HWHPSEVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKKFL--PRIGSPLLYFTESPDPSLS 409 (762)
Q Consensus 334 ~~~~~~~~~~~~~~~~--~~h~~~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~~~--~~~~~~v~~~~~s~~~~~l 409 (762)
+..+ ..+......+++.++++.+++....+.|++||........+ .........+++.++|+.+
T Consensus 147 ------------~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~ 214 (279)
T d1q7fa_ 147 ------------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEIL 214 (279)
T ss_dssp ------------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEE
T ss_pred ------------eecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeecccccccCCcccccccCCeEE
Confidence 1111 23455677889999998888888889999999764433222 2233457889999999976
Q ss_pred EEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCC
Q 040987 410 SISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDR 479 (762)
Q Consensus 410 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~ 479 (762)
++-.. ++.|.+|+. +|+.+..+..... ......+++.|||.+++ +..++.|++|......
T Consensus 215 Vad~~~~~~v~~f~~-~G~~~~~~~~~~~--------~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 215 IADNHNNFNLTIFTQ-DGQLISALESKVK--------HAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp EEECSSSCEEEEECT-TSCEEEEEEESSC--------CSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred EEECCCCcEEEEECC-CCCEEEEEeCCCC--------CCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence 66443 346889885 4777777654321 13568899999997554 5678899999987653
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.96 E-value=1.3e-06 Score=84.37 Aligned_cols=238 Identities=12% Similarity=0.049 Sum_probs=150.3
Q ss_pred ceeEEEEecCCCEEEEEecCCeEEEEecCCCcee-ccCCCCCCeEEEEeCCCCCeEEEEec----CCcEEEEEcCCceEE
Q 040987 355 EVSVLIFSSDGAYLYSGGKEGVLVVWQLDTGKKK-FLPRIGSPLLYFTESPDPSLSSISCA----DNQVHLLKMPSMEII 429 (762)
Q Consensus 355 ~v~~~~~s~~g~~l~s~~~dg~i~~wd~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~----d~~i~i~d~~~~~~~ 429 (762)
.+..++|.++|++.++-...+.|+.|+.++++.. ...........+++++||+++++... .+.+...+.......
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~ 120 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ 120 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceee
Confidence 4568999999987666667889999998877653 33445567889999999988876543 234555555555444
Q ss_pred EEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeec------CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEE
Q 040987 430 RSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAE------NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTL 503 (762)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 503 (762)
........ ......+++.++|++.++... .+.+..++.... .+..+... -.....
T Consensus 121 ~~~~~~~~--------~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~----------~~~pnG 181 (319)
T d2dg1a1 121 DIIEDLST--------AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN----------ISVANG 181 (319)
T ss_dssp EEECSSSS--------CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE----------ESSEEE
T ss_pred eeccCCCc--------ccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeec----------cceeee
Confidence 44332211 135678999999987665432 234555554432 22222211 223578
Q ss_pred EEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCcee-EEEEE--eecCCCCCceEEEEEcCCCCeEEEEeCCCcEE
Q 040987 504 VALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEF-TLSTI--VYEPHRDAGISAVAFHPNRRAAVSSSYGGDFK 580 (762)
Q Consensus 504 ~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~-~~~~~--~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~ 580 (762)
++|+||++.|..+.. ..+.|..|++....... ..... ..... ......+++.++|++.++....+.|.
T Consensus 182 ia~s~dg~~lyvad~--------~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~-~~~PdGl~vD~~G~l~Va~~~~g~V~ 252 (319)
T d2dg1a1 182 IALSTDEKVLWVTET--------TANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVL 252 (319)
T ss_dssp EEECTTSSEEEEEEG--------GGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred eeeccccceEEEecc--------cCCceEEEEEcCCCceeccccceeeeccCC-ccceeeeeEcCCCCEEEEEcCCCEEE
Confidence 999999997766653 66799999987543221 11111 11111 23356799999999888888889999
Q ss_pred EEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEE
Q 040987 581 VWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVA 626 (762)
Q Consensus 581 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~ 626 (762)
+||. .++.+..+. .......+...+++++|.+++..+++.
T Consensus 253 ~~~p-~G~~l~~i~-----~P~~~~~~~~~~~~~~~~~~~~~~~~t 292 (319)
T d2dg1a1 253 VFNK-RGYPIGQIL-----IPGRDEGHMLRSTHPQFIPGTNQLIIC 292 (319)
T ss_dssp EECT-TSCEEEEEE-----CTTGGGTCSCBCCEEEECTTSCEEEEE
T ss_pred EECC-CCcEEEEEe-----CCCcCCCcCceeeeEEEeCCCCEEEEE
Confidence 9996 455444331 111111334567899999988766554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.92 E-value=5.7e-08 Score=92.75 Aligned_cols=71 Identities=7% Similarity=0.118 Sum_probs=51.8
Q ss_pred ceeecC--CCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCC-----eEEEEeCC
Q 040987 79 PAFSND--VKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDG-----TIKYWDFS 151 (762)
Q Consensus 79 ~~~s~d--g~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~-----~i~vWd~~ 151 (762)
+..||| |+.+|+..++.|.+.|+.+++. +.|..+.+.+...+|||||+ .+.++...++ .|.+.+..
T Consensus 4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SPDG~------~iaf~~~~~~~~~~~~i~~~~~~ 76 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFPDGR------KIAIRVMRGSSLNTADLYFYNGE 76 (281)
T ss_dssp CCEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECTTSS------EEEEEEEESTTCCEEEEEEEETT
T ss_pred cccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECCCCC------EEEEEEeeCCCCCceEEEEEEec
Confidence 568999 9999999999999999988775 45777778899999999995 2223332222 35666666
Q ss_pred CcceE
Q 040987 152 VPELL 156 (762)
Q Consensus 152 ~~~~~ 156 (762)
+++..
T Consensus 77 ~g~~~ 81 (281)
T d1k32a2 77 NGEIK 81 (281)
T ss_dssp TTEEE
T ss_pred CCceE
Confidence 66543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.84 E-value=2.1e-07 Score=88.61 Aligned_cols=242 Identities=13% Similarity=0.075 Sum_probs=133.2
Q ss_pred EeCCC--CCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC------ceEEE
Q 040987 401 TESPD--PSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN------YCIHF 472 (762)
Q Consensus 401 ~~s~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~i 472 (762)
..+|| |+.++.. .++.|.++|+.+++..+ +.... +.....+|||||+.||..... ..|.+
T Consensus 5 ~~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~-Lt~~~----------~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~ 72 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-CCDDLWEHDLKSGSTRK-IVSNL----------GVINNARFFPDGRKIAIRVMRGSSLNTADLYF 72 (281)
T ss_dssp CEEEEEETTEEEEE-ETTEEEEEETTTCCEEE-EECSS----------SEEEEEEECTTSSEEEEEEEESTTCCEEEEEE
T ss_pred ccCCCCCCCEEEEE-eCCcEEEEECCCCCEEE-EecCC----------CcccCEEECCCCCEEEEEEeeCCCCCceEEEE
Confidence 35788 9998876 56689999999887654 44333 567889999999999876432 25777
Q ss_pred EEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecC
Q 040987 473 YSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEP 552 (762)
Q Consensus 473 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 552 (762)
++..+++... +....... ..........+|+|||+.|+...... .......+...+.........
T Consensus 73 ~~~~~g~~~~-lt~~~~~~---~~~~~~~~~~~~spdg~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------- 137 (281)
T d1k32a2 73 YNGENGEIKR-ITYFSGKS---TGRRMFTDVAGFDPDGNLIISTDAMQ---PFSSMTCLYRVENDGINFVPL-------- 137 (281)
T ss_dssp EETTTTEEEE-CCCCCEEE---ETTEECSEEEEECTTCCEEEEECTTS---SSTTCCEEEEEEGGGTEEEEC--------
T ss_pred EEecCCceEE-eeecCCCc---cCccccccccccCCCCCEEEEEEccC---CCccceeeeeecCCCceeEEe--------
Confidence 7877664322 11100000 00023356788999999998865211 111233455555554432111
Q ss_pred CCCCceEEEEEcCCCCeEEEEeCCC-----------cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCc
Q 040987 553 HRDAGISAVAFHPNRRAAVSSSYGG-----------DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGS 621 (762)
Q Consensus 553 h~~~~v~~~~~spd~~~l~~~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~ 621 (762)
+ ........+.+++..++....+. ............... ...........++++..
T Consensus 138 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 204 (281)
T d1k32a2 138 N-LGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI------------VDMSTHVSSPVIVGHRI 204 (281)
T ss_dssp C-SCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE------------ECCSSCCEEEEEETTEE
T ss_pred c-CCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccccceeec------------cCCccccceeeeecccc
Confidence 1 22223333333333333332211 111111111111111 11234445566666643
Q ss_pred EEEEEc--CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceee
Q 040987 622 VLAVAA--ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISW 687 (762)
Q Consensus 622 ~la~~~--d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~ 687 (762)
+..... ...|+++|+++++... +..+. ......|||||+.|+... ++. |+++|+++++...
T Consensus 205 ~~~~~~~~~~~l~~~d~~g~~~~~-lt~~~-~~~~~~~SpDG~~I~f~~-~~~--l~~~d~~~g~~~~ 267 (281)
T d1k32a2 205 YFITDIDGFGQIYSTDLDGKDLRK-HTSFT-DYYPRHLNTDGRRILFSK-GGS--IYIFNPDTEKIEK 267 (281)
T ss_dssp EEEECTTSSCEEEEEETTSCSCEE-CCCCC-SSCEEEEEESSSCEEEEE-TTE--EEEECTTTCCEEE
T ss_pred ceecccccccceEEEeCCCCceEE-eecCC-CcccccCcCCCCEEEEEe-CCE--EEEEECCCCCEEE
Confidence 333322 4678899998776543 32222 223356999999998855 454 9999999988664
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.82 E-value=6.6e-06 Score=78.10 Aligned_cols=234 Identities=10% Similarity=-0.019 Sum_probs=145.3
Q ss_pred EEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCC
Q 040987 399 YFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLD 477 (762)
Q Consensus 399 ~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~ 477 (762)
...|.+....|+... ..+.|..||..+++.. .+... ..+.++++.++|.++++ +.+| +..+|..+
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~~~-----------~~~~~i~~~~dg~l~va-~~~g-l~~~d~~t 87 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-VHALP-----------FMGSALAKISDSKQLIA-SDDG-LFLRDTAT 87 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECS-----------SCEEEEEEEETTEEEEE-ETTE-EEEEETTT
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEECC-----------CCcEEEEEecCCCEEEE-EeCc-cEEeeccc
Confidence 456666444444433 5678999998887653 22211 45678999999876665 4554 88999988
Q ss_pred CCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCc
Q 040987 478 DRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAG 557 (762)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~ 557 (762)
++... +..... ......+..+.+.|+|++.++.... .. ..+.-.+|.+..++....... -..
T Consensus 88 g~~~~-l~~~~~-----~~~~~~~nd~~vd~~G~iw~~~~~~---~~--~~~~g~l~~~~~g~~~~~~~~-------~~~ 149 (295)
T d2ghsa1 88 GVLTL-HAELES-----DLPGNRSNDGRMHPSGALWIGTMGR---KA--ETGAGSIYHVAKGKVTKLFAD-------ISI 149 (295)
T ss_dssp CCEEE-EECSST-----TCTTEEEEEEEECTTSCEEEEEEET---TC--CTTCEEEEEEETTEEEEEEEE-------ESS
T ss_pred ceeeE-Eeeeec-----CCCcccceeeEECCCCCEEEEeccc---cc--cccceeEeeecCCcEEEEeec-------cCC
Confidence 76432 211111 1114578999999999977665421 11 122345566666543332221 234
Q ss_pred eEEEEEcCCCCeEEEE-eCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEe
Q 040987 558 ISAVAFHPNRRAAVSS-SYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWD 635 (762)
Q Consensus 558 v~~~~~spd~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd 635 (762)
-+.++|+++++.+..+ +..+.|+.|++.........+ . ...............+++..+|++.++.- .+.|..||
T Consensus 150 ~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~--~-~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d 226 (295)
T d2ghsa1 150 PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK--A-EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD 226 (295)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC--C-EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC
T ss_pred cceeeecCCCceEEEeecccceeeEeeecccccccccc--e-EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec
Confidence 5789999999866554 456788888875432221110 0 01111223345678899999998766654 88999999
Q ss_pred CCCCeEEEEeccccCceeEEEEe-CCCCEEEEEE
Q 040987 636 PDRNVLVAVIGETLTPIMNMSFV-GSSEYLVATS 668 (762)
Q Consensus 636 ~~~~~~~~~l~~~~~~v~~~~~s-~dg~~l~s~~ 668 (762)
. +|+.+..+.-....+++++|- +|.+.|+..+
T Consensus 227 p-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 227 T-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp T-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEE
T ss_pred C-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEE
Confidence 6 588888887666679999997 5766665543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.54 E-value=5.2e-05 Score=71.71 Aligned_cols=220 Identities=14% Similarity=0.033 Sum_probs=143.2
Q ss_pred EEEECCCCCEEE-EE-eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCceee
Q 040987 240 VITISSSGKYFG-IR-KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDRTFA 317 (762)
Q Consensus 240 ~~~~spdg~~la-~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~~~~ 317 (762)
...|.+....|. +. ..+.|..||..+++.. .......+.++++.++|+++++ +.+ .+.++|..+++...
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-------~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~ 92 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGRKT-------VHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL 92 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-------EEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCeEE-------EEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeE
Confidence 456777555554 43 5788999999887642 2233457889999999987765 444 58899987764321
Q ss_pred cccccccccccccccCCCCcccCCccccceeee--ccccceeEEEEecCCCEEEEEecC----CeEEEEecCCCceeccC
Q 040987 318 TNDNKMNLNLMNNEEERPGVRDNDDADLCTTWH--WHPSEVSVLIFSSDGAYLYSGGKE----GVLVVWQLDTGKKKFLP 391 (762)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~~g~~l~s~~~d----g~i~~wd~~~~~~~~~~ 391 (762)
. .... .....++.+.+.|+|+..++.... +.-.+|.+..++...+.
T Consensus 93 l----------------------------~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~ 144 (295)
T d2ghsa1 93 H----------------------------AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF 144 (295)
T ss_dssp E----------------------------ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE
T ss_pred E----------------------------eeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe
Confidence 0 0010 112357788999999876654322 34456666666654443
Q ss_pred CCCCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCc------eE--EEEEccCCCCCCCCCcccCceeeEEEeCCCCEEE
Q 040987 392 RIGSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSM------EI--IRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVA 462 (762)
Q Consensus 392 ~~~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~------~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 462 (762)
..-.....++|+++++.++.+. ..+.|..|++... +. ...+.+.. +....+++..+|++.+
T Consensus 145 ~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~----------g~pdG~~vD~~GnlWv 214 (295)
T d2ghsa1 145 ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK----------GGMDGSVCDAEGHIWN 214 (295)
T ss_dssp EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS----------SEEEEEEECTTSCEEE
T ss_pred eccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCccc----------ccccceEEcCCCCEEe
Confidence 3334567899999998776654 4678888887531 11 11112211 5678899999999888
Q ss_pred EeecCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEe-cCCCeEEEEe
Q 040987 463 LRAENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALS-QDGSLMSTVD 517 (762)
Q Consensus 463 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~~~~ 517 (762)
+....+.|..||. .++.+..+... ...+++++|- ||.+.|.+.+
T Consensus 215 a~~~~g~V~~~dp-~G~~~~~i~lP----------~~~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 215 ARWGEGAVDRYDT-DGNHIARYEVP----------GKQTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEETTTEEEEECT-TCCEEEEEECS----------CSBEEEEEEESTTSCEEEEEE
T ss_pred eeeCCCceEEecC-CCcEeeEecCC----------CCceEEEEEeCCCCCEEEEEE
Confidence 7777889999995 57777776553 2358999996 6776665554
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.21 E-value=0.00054 Score=65.24 Aligned_cols=261 Identities=8% Similarity=-0.012 Sum_probs=151.0
Q ss_pred CCCCeEEEEec-CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeC--CCCEEEEeecC-------------
Q 040987 404 PDPSLSSISCA-DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNH--DGGLVALRAEN------------- 467 (762)
Q Consensus 404 ~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~d------------- 467 (762)
+||+++++... ++.|.+.|+++.+..+.+..... ..+..+...+ +..+++..++.
T Consensus 97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---------~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d 167 (459)
T d1fwxa2 97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---------KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED 167 (459)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---------CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred cceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---------CCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence 48899888764 67899999999998776544321 3445555544 45567665542
Q ss_pred -----ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc------cCCCceeEE-----
Q 040987 468 -----YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE------EGIGSLVCL----- 531 (762)
Q Consensus 468 -----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~------~~~~~d~~i----- 531 (762)
+.+..+|..+.+....+.. ......++++++|+++++.+.+... -.......+
T Consensus 168 ~~~y~~~~t~ID~~tm~V~~QV~V-----------~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~ 236 (459)
T d1fwxa2 168 VANYVNVFTAVDADKWEVAWQVLV-----------SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNI 236 (459)
T ss_dssp GG-EEEEEEEEETTTTEEEEEEEE-----------SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEH
T ss_pred hhhcceEEEEEecCCceEEEEeee-----------CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEech
Confidence 3366788887776666554 2335678999999999988743100 000011223
Q ss_pred ------------------EEEEecCC---CceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEcccccc
Q 040987 532 ------------------KFWVSGTQ---NKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDELQ 589 (762)
Q Consensus 532 ------------------~iwd~~~~---~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~~ 589 (762)
.+-|.... .....+.. ......+.++|||+++++++ .+.++.|+|++.-..
T Consensus 237 ~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-------pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~ 309 (459)
T d1fwxa2 237 AEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 309 (459)
T ss_dssp HHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred HHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-------CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhh
Confidence 33343321 11111211 22344689999999988766 578999999974332
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCC----------eEEEEeccccCceeEE---
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRN----------VLVAVIGETLTPIMNM--- 655 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~----------~~~~~l~~~~~~v~~~--- 655 (762)
........-.+.............-+|...|.-..+-. |..|.-|++... ..+..+.-|-.+ -.+
T Consensus 310 ~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~-gh~~~~ 388 (459)
T d1fwxa2 310 VFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP-GHLKTV 388 (459)
T ss_dssp HHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE-EEEEET
T ss_pred hhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCC-CCCccC
Confidence 21100000011111112345566789988885444445 999999998532 445555544332 222
Q ss_pred ---EEeCCCCEEEEEEc---CCC--------CeEEEEECCCCceeeEEEEe
Q 040987 656 ---SFVGSSEYLVATSW---GSK--------PQLSVWNMSKLSISWSYLLH 692 (762)
Q Consensus 656 ---~~s~dg~~l~s~~~---d~~--------~~v~vwd~~~~~~~~~~~~~ 692 (762)
...|||++|++... |+- -.-.+.|+...++......+
T Consensus 389 ~g~t~~~dgk~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p 439 (459)
T d1fwxa2 389 MGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP 439 (459)
T ss_dssp TTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred cCCcCCCCCCEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEeccC
Confidence 24679999999863 331 02457777666554444444
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.16 E-value=0.0025 Score=58.27 Aligned_cols=238 Identities=11% Similarity=-0.041 Sum_probs=145.0
Q ss_pred CCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe-ecCCeEEEEeccCCceeecccccccc
Q 040987 247 GKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG-DVTGRILIWRGFGDRTFATNDNKMNL 325 (762)
Q Consensus 247 g~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~-~~dg~v~vw~~~~~~~~~~~~~~~~~ 325 (762)
|.+|..+..+.|+-.+++...............+...+.+++|.+..++|... ..++.|+..++.+....
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~--------- 71 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPT--------- 71 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCE---------
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcE---------
Confidence 45777777788888888765433222333344455568889999877777665 34677888887654321
Q ss_pred cccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccC-CCCCCeEEEEeC
Q 040987 326 NLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLP-RIGSPLLYFTES 403 (762)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~-~~~~~v~~~~~s 403 (762)
..+......+..+++..-+..|+.+. ..+.|.+.+++......+. ........+++.
T Consensus 72 ---------------------~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vd 130 (263)
T d1npea_ 72 ---------------------TIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTD 130 (263)
T ss_dssp ---------------------EEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE
T ss_pred ---------------------EEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEe
Confidence 12222234578899987666776554 4578999998876654332 223568899999
Q ss_pred CCCCeEEEEecC-Cc--EEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCC
Q 040987 404 PDPSLSSISCAD-NQ--VHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDR 479 (762)
Q Consensus 404 ~~~~~l~~~~~d-~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~ 479 (762)
|...+++..... +. |...++............- ....++++++.++.|..+ ...+.|...++....
T Consensus 131 p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~----------~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 131 PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL----------GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (263)
T ss_dssp TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred cccCcEEEeecCCCCcEEEEecCCCCCceeeeeecc----------cccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence 987777765432 23 4444555433322222211 456789999888777655 456789988886543
Q ss_pred ceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 480 GISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
. ..+... ......+++. +.+|...+. ..+.|...|..+++....+
T Consensus 201 ~-~~v~~~----------~~~P~~lav~--~~~lYwtd~--------~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 201 R-RKVLEG----------LQYPFAVTSY--GKNLYYTDW--------KTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp E-EEEEEC----------CCSEEEEEEE--TTEEEEEET--------TTTEEEEEETTTTEEEEEE
T ss_pred e-EEEECC----------CCCcEEEEEE--CCEEEEEEC--------CCCEEEEEECCCCccceEE
Confidence 2 222111 1123566665 455555542 5678888888877654433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=98.12 E-value=0.0014 Score=64.42 Aligned_cols=303 Identities=9% Similarity=0.007 Sum_probs=153.1
Q ss_pred CeEEEEEcCCCcEEEEeecC-----C------eEEEEeccCCceeecccccccccccccccCCCCcccCCcccccee-ee
Q 040987 283 KLTVLAFHPTQRIVAAGDVT-----G------RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTT-WH 350 (762)
Q Consensus 283 ~v~~~~~sp~~~~l~~~~~d-----g------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 350 (762)
.+.......+|+.++.|+.+ + .+.+||..+++... ... ..
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----------------------------~~~~~~ 72 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----------------------------RTVTVT 72 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----------------------------CEEEEC
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEee----------------------------cCCCCC
Confidence 33444555688888877642 1 36789987764321 111 11
Q ss_pred ccccceeEEEEecCCCEEEEEecC-CeEEEEecCCCceeccCCCCC--CeEEEEeCCCCCeEEEEecC------CcEEEE
Q 040987 351 WHPSEVSVLIFSSDGAYLYSGGKE-GVLVVWQLDTGKKKFLPRIGS--PLLYFTESPDPSLSSISCAD------NQVHLL 421 (762)
Q Consensus 351 ~h~~~v~~~~~s~~g~~l~s~~~d-g~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~d------~~i~i~ 421 (762)
.|.......++.++|+.++.|+.+ ..+.+||..+........... .-...+..+||+.++.++.. ..+.+|
T Consensus 73 ~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 73 KHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp SCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred CcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeee
Confidence 222233456788999999888765 579999999887754433322 23456677899999888653 368999
Q ss_pred EcCCceEEEEEccCCCCCCCCCcc-----cCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEeecccccCCCC
Q 040987 422 KMPSMEIIRSISGIKLPCPLPEEY-----KGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVCERNHQPGDD 496 (762)
Q Consensus 422 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~ 496 (762)
|..+.+-.. +............+ ...-..+...++++.+..+...+.+.+++..+.......... ........
T Consensus 153 d~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 230 (387)
T d1k3ia3 153 SPSSKTWTS-LPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQ-SNRGVAPD 230 (387)
T ss_dssp ETTTTEEEE-ETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECE-ETTEECCC
T ss_pred cCCCCceee-cCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccc-cCcccCcc
Confidence 998765432 22111100000000 011122334557777777777788888887765432211111 00000000
Q ss_pred cceeEEEEEE-ecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeE-EEEEeecCCCCCceEEEEEcCCCCeEEEEe
Q 040987 497 VTVVVTLVAL-SQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFT-LSTIVYEPHRDAGISAVAFHPNRRAAVSSS 574 (762)
Q Consensus 497 ~~~~v~~~~~-sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~h~~~~v~~~~~spd~~~l~~~~ 574 (762)
...-.++.+ ..+++.++.++....... .......+.+......... .......++ ...-.+.+..+||+++++|+
T Consensus 231 -~~~~~~~~~~~~~g~v~v~GG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~r~~~~~~~~~dg~i~v~GG 307 (387)
T d1k3ia3 231 -AMCGNAVMYDAVKGKILTFGGSPDYQDS-DATTNAHIITLGEPGTSPNTVFASNGLYF-ARTFHTSVVLPDGSTFITGG 307 (387)
T ss_dssp -CBTCEEEEEETTTTEEEEECCBSSSSSS-BCCCCEEEEECCSTTSCCEEEECTTCCSS-CCBSCEEEECTTSCEEEECC
T ss_pred -cccccEEEeeccCCceEEEEeccCCCCC-cccceeecccccccccCCCceeecccccc-ccccceeeeccCCeEEEECC
Confidence 001122222 346777777763211110 0112333333332211111 100000111 22233556678999999988
Q ss_pred CC-----------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc
Q 040987 575 YG-----------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA 627 (762)
Q Consensus 575 ~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~ 627 (762)
.+ .++.+||..+.+- ............-....+.+||+.++.|+
T Consensus 308 ~~~~~~~~~~~~~~~ve~Ydp~~~~W---------~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG 362 (387)
T d1k3ia3 308 QRRGIPFEDSTPVFTPEIYVPEQDTF---------YKQNPNSIVRVYHSISLLLPDGRVFNGGG 362 (387)
T ss_dssp BSBCCTTCCCSBCCCCEEEEGGGTEE---------EECCCCSSCCCTTEEEEECTTSCEEEEEC
T ss_pred cccCccCCCCcEeceEEEEECCCCeE---------EECCCCCCcccceEEEEECCCCEEEEEeC
Confidence 53 1477898876542 22211111111112344679999999886
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=98.09 E-value=0.0015 Score=67.73 Aligned_cols=300 Identities=9% Similarity=-0.032 Sum_probs=156.0
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCC--CeEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
+.+++.++.|+.|.-.|.++|+......... .-..+.-+| .+..++++.. .|.|+-+|..+|+++.++..
T Consensus 121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t 200 (596)
T d1w6sa_ 121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (596)
T ss_dssp CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeec
Confidence 3468888889999999999998754321110 000011111 1334555433 48899999999999988753
Q ss_pred CCCCC----------C-----------------CCCcccC-ceeeEEEeCCCCEEEEeec----------------CceE
Q 040987 435 IKLPC----------P-----------------LPEEYKG-LCRDIAFNHDGGLVALRAE----------------NYCI 470 (762)
Q Consensus 435 ~~~~~----------~-----------------~~~~~~~-~v~~~~~s~~~~~l~~~~~----------------dg~i 470 (762)
..... . ....... .-..+++.+...++..+.. ...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~si 280 (596)
T d1w6sa_ 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTI 280 (596)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred cCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccc
Confidence 32100 0 0000001 1234567777666666532 2457
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEE-EecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVA-LSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLS 546 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~ 546 (762)
.-.|+.+++....++......-..+. .....-+. ...+|+ .++... .++.+.++|..+++.+...+
T Consensus 281 vAlD~~TG~~~W~~Q~~~~D~Wd~d~-~~~~~l~d~~~~~G~~~~~v~~~~---------k~G~~~vlDr~tG~~i~~~~ 350 (596)
T d1w6sa_ 281 FGRDADTGEAKFGYQKTPHDEWDYAG-VNVMMLSEQKDKDGKARKLLTHPD---------RNGIVYTLDRTDGALVSANK 350 (596)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCC-CCCCEEEEEECTTSCEEEEEEEEC---------TTSEEEEEETTTCCEEEEEE
T ss_pred cccccccccccccccceeccccCCcc-ccceeeeeccccccccccceeccc---------cccceeeecCCCCceeeecc
Confidence 78899999887766654332211111 11111122 123443 455555 77889999999887664332
Q ss_pred EEeecCCCCCc-------------------------------------eEEEEEcCCCCeEEEEeCCCcEEEEEcccccc
Q 040987 547 TIVYEPHRDAG-------------------------------------ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQ 589 (762)
Q Consensus 547 ~~~~~~h~~~~-------------------------------------v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~ 589 (762)
.. .. ... -...+++|+..+++....+.. ..|.......
T Consensus 351 ~~---~~-~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~-~~~~~~~~~~ 425 (596)
T d1w6sa_ 351 LD---DT-VNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHIC-MDWEPFMLPY 425 (596)
T ss_dssp SS---TT-CCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEE-EEEEECCCCC
T ss_pred cc---cc-ccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccc-cccccccccc
Confidence 10 00 000 012344454444444433211 1111110000
Q ss_pred cccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEc
Q 040987 590 QKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSW 669 (762)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~ 669 (762)
.. .......-......|.+.......-|.|.-||+.+|+.+-... +..+..+-..+-.|.+++.++.
T Consensus 426 ~~------------g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~-~~~~~~gg~lsTagglVF~G~~ 492 (596)
T d1w6sa_ 426 KA------------GQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKM-ERFAVWGGTMATAGDLVFYGTL 492 (596)
T ss_dssp CT------------TSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEE-ESSCCCSBCEEETTTEEEEECT
T ss_pred cc------------cccccccccccccCcccCcccCCCcceEEEEeCCCCceecccC-CCCCCccceeEecCCEEEEECC
Confidence 00 0000011112222232211111113689999999998876653 2333333334446778888999
Q ss_pred CCCCeEEEEECCCCceeeEEEEeec
Q 040987 670 GSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 670 d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
||. ++.+|.++|+++|++.....
T Consensus 493 Dg~--l~A~Da~TGe~LW~~~~~~~ 515 (596)
T d1w6sa_ 493 DGY--LKARDSDTGDLLWKFKIPSG 515 (596)
T ss_dssp TSE--EEEEETTTCCEEEEEECSSC
T ss_pred CCe--EEEEECCCCcEeeEEECCCC
Confidence 988 99999999999999988754
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.06 E-value=0.00057 Score=65.08 Aligned_cols=197 Identities=11% Similarity=0.013 Sum_probs=123.4
Q ss_pred EEEEe---cCCCEEEEEe-cCCeEEEEecCCCceec--cCCCCCCeEEEEeCC--CCCeEEEEecC--------------
Q 040987 358 VLIFS---SDGAYLYSGG-KEGVLVVWQLDTGKKKF--LPRIGSPLLYFTESP--DPSLSSISCAD-------------- 415 (762)
Q Consensus 358 ~~~~s---~~g~~l~s~~-~dg~i~~wd~~~~~~~~--~~~~~~~v~~~~~s~--~~~~l~~~~~d-------------- 415 (762)
.+++. +||++++... .+..|.+.|+++.+... .......+..+...+ +-.+++..+..
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 45554 4889888776 56889999999988744 334445667666654 44566665442
Q ss_pred ----CcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc---------------eEE-----
Q 040987 416 ----NQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY---------------CIH----- 471 (762)
Q Consensus 416 ----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---------------~i~----- 471 (762)
+.+.++|..+++....+... +....+.++++|+++++.+.+. .+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V~-----------g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~ 237 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLVS-----------GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA 237 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEES-----------SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred hhcceEEEEEecCCceEEEEeeeC-----------CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence 23677899998887776542 3456899999999988876331 122
Q ss_pred ------------------EEEcCCC---CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeE
Q 040987 472 ------------------FYSLLDD---RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVC 530 (762)
Q Consensus 472 ------------------i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~ 530 (762)
+.|.... ..+..++. ......+.++|||+++++++. .+.+
T Consensus 238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-----------pKsPHGV~vSPDGKyi~VaGK--------Ls~t 298 (459)
T d1fwxa2 238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-----------ANNPHGCNMAPDKKHLCVAGK--------LSPT 298 (459)
T ss_dssp HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-----------ESSCCCEEECTTSSEEEEECT--------TSSB
T ss_pred HhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-----------CCCCCceEECCCCCEEEEeCC--------cCCc
Confidence 3333211 11111222 122457899999999999874 7889
Q ss_pred EEEEEecCCCc--------eeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccc
Q 040987 531 LKFWVSGTQNK--------EFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDE 587 (762)
Q Consensus 531 i~iwd~~~~~~--------~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~ 587 (762)
+.++|++.-.. ...+... ... .-.-..-+|+..|....+---|..|.-|++...
T Consensus 299 VSViD~~Ki~~~~~~~~~~~~~~~~e--~el-glgPLht~fd~~g~aytslfids~v~kw~~~~~ 360 (459)
T d1fwxa2 299 VTVLDVTRFDAVFYENADPRSAVVAE--PEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDA 360 (459)
T ss_dssp EEEEEGGGHHHHHHSCC-GGGGEEEC--CBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHH
T ss_pred EEEEEehhhhhhhcccCCccccEEee--ccc-CcCccccccCCCceEEEEeeccceEEEEecchh
Confidence 99999863211 1111100 011 223345688888865556668999999999654
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.02 E-value=0.0016 Score=67.25 Aligned_cols=299 Identities=11% Similarity=-0.023 Sum_probs=156.0
Q ss_pred CEEEEEecCCeEEEEecCCCceeccCCC-----CCCeEEEEeCCCCCeEEEEe------cCCcEEEEEcCCceEEEEEcc
Q 040987 366 AYLYSGGKEGVLVVWQLDTGKKKFLPRI-----GSPLLYFTESPDPSLSSISC------ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 366 ~~l~s~~~dg~i~~wd~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~ 434 (762)
..++.++.|+.+.-.|.++|+....... ...++..-.-.++ .++++. ..|.|.-+|+.+|+.+..+..
T Consensus 116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 194 (571)
T d2ad6a1 116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence 4677788899999999999987432211 1111110001123 344443 267899999999999987654
Q ss_pred CCCCCC---------------------------CCCcccCce-eeEEEeCCCCEEEEeec----------------CceE
Q 040987 435 IKLPCP---------------------------LPEEYKGLC-RDIAFNHDGGLVALRAE----------------NYCI 470 (762)
Q Consensus 435 ~~~~~~---------------------------~~~~~~~~v-~~~~~s~~~~~l~~~~~----------------dg~i 470 (762)
...+.. ......+.+ ...++.++...+..+.. ...+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~sv 274 (571)
T d2ad6a1 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccce
Confidence 321000 000000112 24577777776665543 2467
Q ss_pred EEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEE
Q 040987 471 HFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLST 547 (762)
Q Consensus 471 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~ 547 (762)
.-.|..+++.....+......-..+. ........+..+++ .++..+ .++.+.++|..+++.+.....
T Consensus 275 vAld~~TG~~~W~~q~~~~D~Wd~D~-~~~~~l~~~~~~g~~~~~v~~~~---------k~G~l~vlDr~tG~~i~~~~~ 344 (571)
T d2ad6a1 275 WGRDLDTGMAKWGYQKTPHDEWDFAG-VNQMVLTDQPVNGKMTPLLSHID---------RNGILYTLNRENGNLIVAEKV 344 (571)
T ss_dssp EEEETTTCCEEEEEESSTTCSSCCCC-CCCCEEEEEEETTEEEEEEEEEC---------TTSEEEEEETTTCCEEEEEES
T ss_pred eeeeccchhheecccccCcccccccc-ccccceeeeeccCccccceeecc---------ccceEEEEecCCCcEeeeecc
Confidence 88899999887766654332211111 11122222333554 334444 778999999988886543221
Q ss_pred Ee-------------------------------ecCCCCCc--eEEEEEcCCCCeEEEEeCCCcEEEEEccccccccccc
Q 040987 548 IV-------------------------------YEPHRDAG--ISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQ 594 (762)
Q Consensus 548 ~~-------------------------------~~~h~~~~--v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 594 (762)
.. ..++..+. -...+++|+..+++....+....+..........
T Consensus 345 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~--- 421 (571)
T d2ad6a1 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAG--- 421 (571)
T ss_dssp STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT---
T ss_pred CCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCC---
Confidence 00 00000000 0124566666666665544322221111000000
Q ss_pred CCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCC
Q 040987 595 SSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKP 673 (762)
Q Consensus 595 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~ 673 (762)
.......+...+..... ... .|.|.-+|+.+|+.+-..... .+..+-..+-.+.++++++.|+.
T Consensus 422 ------------~~~~~~~~~~~~~~~~~-~~~~~G~l~AiD~~TG~~~W~~~~~-~~~~~g~l~TagglVf~G~~dg~- 486 (571)
T d2ad6a1 422 ------------QFFVGATLAMYPGPNGP-TKKEMGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGY- 486 (571)
T ss_dssp ------------SCCCCEEEEEEECTTST-TSCCCEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSE-
T ss_pred ------------ccccccceeeccccCCc-ccCCcccEEEeccCCCceeeEcCCC-CCCCcceeEecCCEEEEECCCCe-
Confidence 00001111111111000 011 478999999999887665422 22222122324567888999988
Q ss_pred eEEEEECCCCceeeEEEEeec
Q 040987 674 QLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 674 ~v~vwd~~~~~~~~~~~~~~~ 694 (762)
++.+|.++|+++|++.....
T Consensus 487 -l~A~Da~tGe~lW~~~l~~~ 506 (571)
T d2ad6a1 487 -LKALDNKDGKELWNFKMPSG 506 (571)
T ss_dssp -EEEEETTTCCEEEEEECSSC
T ss_pred -EEEEECCCCcEEEEEECCCC
Confidence 99999999999999998865
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=0.0045 Score=55.51 Aligned_cols=235 Identities=12% Similarity=0.190 Sum_probs=142.9
Q ss_pred ccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcC
Q 040987 212 MNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHP 291 (762)
Q Consensus 212 ~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 291 (762)
....+.+.|+..+........ .-.+.-.+|..+.||.-....+.++|+++.+.. +.. ....+|.-=.|-.
T Consensus 43 ~~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALrag~~LQiFnletK~kl-----ks~-~~~e~VvfWkWis 112 (327)
T d1utca2 43 EQAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKAGKTLQIFNIEMKSKM-----KAH-TMTDDVTFWKWIS 112 (327)
T ss_dssp TEEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEETTEEEEEETTTTEEE-----EEE-ECSSCCCEEEESS
T ss_pred CCceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEecCCeEEEEehhHhhhh-----ceE-EcCCCcEEEEecC
Confidence 345788888887665422222 223456679999999777889999999998753 222 2334676667775
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccc----cceeEEEEecCCCE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHP----SEVSVLIFSSDGAY 367 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~~~~s~~g~~ 367 (762)
+. .|+.-+ +..|+=|++++.. ++.+.+..|. ..|..-..+++.++
T Consensus 113 ~~-~L~lVT-~taVYHW~~~g~s-----------------------------~P~k~fdR~~~L~~~QIInY~~d~~~kW 161 (327)
T d1utca2 113 LN-TVALVT-DNAVYHWSMEGES-----------------------------QPVKMFDRHSSLAGCQIINYRTDAKQKW 161 (327)
T ss_dssp SS-EEEEEC-SSEEEEEESSSSC-----------------------------CCEEEEECCGGGTTCEEEEEEECTTSCE
T ss_pred CC-EEEEEc-CCceEEEcccCCC-----------------------------CchhhhhhcccccCceEEEEEECCCCCE
Confidence 55 455443 4579999985532 1233444333 34666677788888
Q ss_pred EEEEe---c----CCeEEEEecCCCceeccCCCCCCeEEEEeCCCC---CeEEEEe---cCCcEEEEEcCCceE-EEEEc
Q 040987 368 LYSGG---K----EGVLVVWQLDTGKKKFLPRIGSPLLYFTESPDP---SLSSISC---ADNQVHLLKMPSMEI-IRSIS 433 (762)
Q Consensus 368 l~s~~---~----dg~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~---~d~~i~i~d~~~~~~-~~~~~ 433 (762)
++..+ . .|.+.+|..+.+..+.+.+|......+.+..+. +.++.+. ..+.+++.++..... -..+.
T Consensus 162 ~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~ 241 (327)
T d1utca2 162 LLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFP 241 (327)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCC
T ss_pred EEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCc
Confidence 77543 1 377899999988777777665444444332211 2233322 225677877754210 00000
Q ss_pred cCCCCC-CCCCcccCceeeEEEeCCCCEEEEeecCceEEEEEcCCCCceeeEEee
Q 040987 434 GIKLPC-PLPEEYKGLCRDIAFNHDGGLVALRAENYCIHFYSLLDDRGISEVQVC 487 (762)
Q Consensus 434 ~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 487 (762)
.....+ -.++...+...++.+++.-..+...+.-|.+++||+.++..+..-...
T Consensus 242 kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs 296 (327)
T d1utca2 242 KKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS 296 (327)
T ss_dssp CEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred ceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecC
Confidence 000000 012222355678888988888999999999999999999877665543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.96 E-value=0.0058 Score=54.78 Aligned_cols=267 Identities=8% Similarity=0.058 Sum_probs=160.9
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
.++.+.|+..+........ ...+.-.+|..+.|+.-+ ...+.++|+++.+.++.+.-.. .|.--.|
T Consensus 45 ~~VvIidl~n~~~~~Rrpi--~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e-----------~VvfWkW 110 (327)
T d1utca2 45 AQVVIIDMNDPSNPIRRPI--SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-----------DVTFWKW 110 (327)
T ss_dssp EEEEEEETTSTTSCEEEEC--CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-----------CCCEEEE
T ss_pred ceEEEEECCCCCcceeccc--chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC-----------CcEEEEe
Confidence 5788999887654222111 223455678888888765 6689999999998888876443 4444455
Q ss_pred eCCCCEEEEeecCceEEEEEcCCCCceeeE-EeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEE
Q 040987 455 NHDGGLVALRAENYCIHFYSLLDDRGISEV-QVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKF 533 (762)
Q Consensus 455 s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~i 533 (762)
-.+ +.|+..+. ..|+-|++........+ ..... . ....|-....++++++++..+......+ -.|.+.+
T Consensus 111 is~-~~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~-L-----~~~QIInY~~d~~~kW~~l~GI~~~~~~--i~G~mQL 180 (327)
T d1utca2 111 ISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS-L-----AGCQIINYRTDAKQKWLLLTGISAQQNR--VVGAMQL 180 (327)
T ss_dssp SSS-SEEEEECS-SEEEEEESSSSCCCEEEEECCGG-G-----TTCEEEEEEECTTSCEEEEEEEEEETTE--EEEEEEE
T ss_pred cCC-CEEEEEcC-CceEEEcccCCCCchhhhhhccc-c-----cCceEEEEEECCCCCEEEEEeEecCCCc--eeEEEEE
Confidence 444 45555544 45999999654433222 22111 1 1567889999999999988775433322 5689999
Q ss_pred EEecCCCceeEEEEEeecCCCCCceEEEEEcCCC---CeEEEEe---CCCcEEEEEcccccc-cccccCCceeeeeeccc
Q 040987 534 WVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNR---RAAVSSS---YGGDFKVWICNDELQ-QKDLQSSGWSCHAVGSY 606 (762)
Q Consensus 534 wd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~---~~l~~~~---~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~ 606 (762)
|..+.... . ..+|| .+....+.+.-+. +.++.+. ..+.+.|.++..... ...+.............
T Consensus 181 YS~er~~s-Q-----~ieGh-aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea 253 (327)
T d1utca2 181 YSVDRKVS-Q-----PIEGH-AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA 253 (327)
T ss_dssp EETTTTEE-E-----EECCS-EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTC
T ss_pred EEeccCcC-c-----cccce-eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccc
Confidence 99886532 1 23677 4333333332211 2333332 235788888876432 22221111111111223
Q ss_pred CCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC
Q 040987 607 KKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK 672 (762)
Q Consensus 607 ~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~ 672 (762)
..+-..++..|+.-..+..-+ -|.|++||++++.++..-+-..++|.-.+-..+..=++....+|.
T Consensus 254 ~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~Gq 320 (327)
T d1utca2 254 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQ 320 (327)
T ss_dssp TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSE
T ss_pred cCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCe
Confidence 345566888888777887777 899999999999998776655666665555555445555555553
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.94 E-value=0.0027 Score=62.40 Aligned_cols=297 Identities=10% Similarity=0.007 Sum_probs=150.3
Q ss_pred CceEEEECCCCCEEEEEe-C-----C------eEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-C
Q 040987 237 EPQVITISSSGKYFGIRK-Q-----R------KLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT-G 303 (762)
Q Consensus 237 ~v~~~~~spdg~~la~~~-~-----~------~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g 303 (762)
.+...+...||+.++.+. + + .+.+||..+++.. ........+.......++.+++++++.|+.+ .
T Consensus 21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~--~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS--DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK 98 (387)
T ss_dssp CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC--CCEEEECSCCCSSCEEEECTTSCEEEECSSSTT
T ss_pred ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe--ecCCCCCCcccceeEEEEecCCcEEEeecCCCc
Confidence 444555667888887542 1 1 3779999988754 2212223343334566888999999988665 5
Q ss_pred eEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEecC------CeE
Q 040987 304 RILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGGKE------GVL 377 (762)
Q Consensus 304 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~d------g~i 377 (762)
.+.+||..+...... ..+... ..-..++..+||+.++.++.+ ..+
T Consensus 99 ~~~~yd~~~~~w~~~----------------------------~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v 149 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPG----------------------------PDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNG 149 (387)
T ss_dssp CEEEEEGGGTEEEEC----------------------------CCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCE
T ss_pred ceeEecCccCccccc----------------------------cccccc-ccccceeeecCCceeeecccccccccccee
Confidence 899999876643221 111111 112356677899998888753 358
Q ss_pred EEEecCCCceeccCCCCC---------------CeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCC
Q 040987 378 VVWQLDTGKKKFLPRIGS---------------PLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLP 442 (762)
Q Consensus 378 ~~wd~~~~~~~~~~~~~~---------------~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 442 (762)
.+||..+.+...+..... .-..+...++|+.+..+...+.+.+++..+.................
T Consensus 150 ~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (387)
T d1k3ia3 150 EVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAP 229 (387)
T ss_dssp EEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECC
T ss_pred eeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCc
Confidence 999998876543222110 01112233566666666666677777777654432211100000000
Q ss_pred CcccCceeeEEE-eCCCCEEEEeecCc--------eEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeE
Q 040987 443 EEYKGLCRDIAF-NHDGGLVALRAENY--------CIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLM 513 (762)
Q Consensus 443 ~~~~~~v~~~~~-s~~~~~l~~~~~dg--------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l 513 (762)
.. ..-.++.+ ..+++.++.++... ...+.+............... ..+. ...-.+.+..+||+.+
T Consensus 230 ~~--~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~---~r~~~~~~~~~dg~i~ 303 (387)
T d1k3ia3 230 DA--MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN-GLYF---ARTFHTSVVLPDGSTF 303 (387)
T ss_dssp CC--BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT-CCSS---CCBSCEEEECTTSCEE
T ss_pred cc--ccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc-cccc---ccccceeeeccCCeEE
Confidence 00 01112222 23566777776321 233333332211111111000 0000 1112345666899999
Q ss_pred EEEeeecccc--CCCceeEEEEEEecCCCceeEEEEEeecCCCCCce-EEEEEcCCCCeEEEEeC
Q 040987 514 STVDIKLAEE--GIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGI-SAVAFHPNRRAAVSSSY 575 (762)
Q Consensus 514 ~~~~~~~~~~--~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v-~~~~~spd~~~l~~~~~ 575 (762)
++++...... .......+.+||.++.+-.. +.. .+. ...- ....+.+||+.++.|+.
T Consensus 304 v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~~---~~~-~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 304 ITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNP---NSI-VRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp EECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCC---CSS-CCCTTEEEEECTTSCEEEEECC
T ss_pred EECCcccCccCCCCcEeceEEEEECCCCeEEE-CCC---CCC-cccceEEEEECCCCEEEEEeCC
Confidence 9887431111 00122367899988764211 111 111 1111 23446799999999884
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.90 E-value=0.0018 Score=66.78 Aligned_cols=313 Identities=9% Similarity=0.033 Sum_probs=176.5
Q ss_pred EEEEEecCCeEEEEecCCCceeccCCCC-----------CCe-EEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEcc
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPRIG-----------SPL-LYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~~~-----------~~v-~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 434 (762)
.|+.++.++.|.-.|.++|+.+...... ..+ ..++. .+..++.+..++.+.-.|..+|+.+..+..
T Consensus 68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~ 145 (560)
T d1kv9a2 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT 145 (560)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence 5666777889999999999875421110 000 01111 245678888999999999999999887754
Q ss_pred CCCCCCCCCcccCceeeEEEeCCCCEEEEee------cCceEEEEEcCCCCceeeEEeecccccCC-C------------
Q 040987 435 IKLPCPLPEEYKGLCRDIAFNHDGGLVALRA------ENYCIHFYSLLDDRGISEVQVCERNHQPG-D------------ 495 (762)
Q Consensus 435 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~------------ 495 (762)
...... ..+...-.-.++ .++++. ..|.|.-+|.++++.+.++.......... .
T Consensus 146 ~~~~~~------~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~ 218 (560)
T d1kv9a2 146 TDPAKP------YSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ 218 (560)
T ss_dssp SCTTSS------CBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred cCcccc------eeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccc
Confidence 321110 011110001122 333332 24789999999999988876543211000 0
Q ss_pred --C-----ccee-EEEEEEecCCCeEEEEeeeccc-------c--C-CCceeEEEEEEecCCCceeEEEEEeecCCC---
Q 040987 496 --D-----VTVV-VTLVALSQDGSLMSTVDIKLAE-------E--G-IGSLVCLKFWVSGTQNKEFTLSTIVYEPHR--- 554 (762)
Q Consensus 496 --~-----~~~~-v~~~~~sp~g~~l~~~~~~~~~-------~--~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~--- 554 (762)
. .... =..+++.+...++..+...... . + ......|.-.|.++++.....+. ..|.
T Consensus 219 ~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~---~~~D~wd 295 (560)
T d1kv9a2 219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQV---TPGDSWD 295 (560)
T ss_dssp SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES---STTCCSC
T ss_pred ccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEec---ccccccc
Confidence 0 0001 1235667777766654422100 0 0 00134677779999988776653 2220
Q ss_pred ---CCceEEEEEcCCC---CeEEEEeCCCcEEEEEccccccccccc--CCceeeeee---------------------cc
Q 040987 555 ---DAGISAVAFHPNR---RAAVSSSYGGDFKVWICNDELQQKDLQ--SSGWSCHAV---------------------GS 605 (762)
Q Consensus 555 ---~~~v~~~~~spd~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~---------------------~~ 605 (762)
.....-+....++ +.++.++.+|.+.++|..+++.+...+ ...|..... ..
T Consensus 296 ~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p 375 (560)
T d1kv9a2 296 FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWP 375 (560)
T ss_dssp CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESS
T ss_pred ccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccccccccccceeeee
Confidence 0111112222234 356678888999999999888764332 001110000 00
Q ss_pred cC--CCCeEEEEEcCCCcEEEEEc-------------------------------------CCeEEEEeCCCCeEEEEec
Q 040987 606 YK--KKAMTAAAFSADGSVLAVAA-------------------------------------ETVITLWDPDRNVLVAVIG 646 (762)
Q Consensus 606 ~~--~~~i~~~~~s~dg~~la~~~-------------------------------------d~~i~iwd~~~~~~~~~l~ 646 (762)
.. ...-...+++|+..++.+.. .|.+.-||+.+|+.+-...
T Consensus 376 ~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~ 455 (560)
T d1kv9a2 376 SPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP 455 (560)
T ss_dssp CTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE
T ss_pred ccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeecc
Confidence 00 01112456677776665432 1467889999998887664
Q ss_pred cccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 647 ETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
. ..+..+-..+-.|.+++.++.||. ++.+|.++|+++|++.....
T Consensus 456 ~-~~~~~gg~l~TagglVF~G~~dg~--l~A~Da~tGe~LW~~~l~~~ 500 (560)
T d1kv9a2 456 Y-PTHWNGGTLSTAGNLVFQGTAAGQ--MHAYSADKGEALWQFEAQSG 500 (560)
T ss_dssp E-SSSCCCCEEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred C-CCCCCCceeEECCCEEEEECCCCc--EEEEECCCCcEeEEEECCCC
Confidence 2 223333233445678888989987 99999999999999998765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=0.0084 Score=54.63 Aligned_cols=235 Identities=9% Similarity=-0.034 Sum_probs=140.3
Q ss_pred CCEEEEEeCCEEEEEEcccce-----EEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEE
Q 040987 85 VKRLLVCTSNTVSIFSTSTGL-----QISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTI 159 (762)
Q Consensus 85 g~~la~~~~~~i~iwd~~~~~-----~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~ 159 (762)
|.+|..+..+.|+-.+++... ....+..+...+.+++|.+..+ .+..+-..++.|+..++..+.....+
T Consensus 1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~------~iywsd~~~~~I~~~~l~g~~~~~v~ 74 (263)
T d1npea_ 1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDK------VVYWTDISEPSIGRASLHGGEPTTII 74 (263)
T ss_dssp CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTT------EEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCC------EEEEEECCCCeEEEEEcccCCcEEEE
Confidence 567888888888888875433 1223444556688899998874 33344445566777666544322211
Q ss_pred EeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCce
Q 040987 160 DVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQ 239 (762)
Q Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~ 239 (762)
. .....+.
T Consensus 75 ~------------------------------------------------------------------------~~~~~p~ 82 (263)
T d1npea_ 75 R------------------------------------------------------------------------QDLGSPE 82 (263)
T ss_dssp C------------------------------------------------------------------------TTCCCEE
T ss_pred E------------------------------------------------------------------------ecccccc
Confidence 1 1123456
Q ss_pred EEEECCCCCEEEEE--eCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEeecC-CeEEEE--eccCCc
Q 040987 240 VITISSSGKYFGIR--KQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGDVT-GRILIW--RGFGDR 314 (762)
Q Consensus 240 ~~~~spdg~~la~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d-g~v~vw--~~~~~~ 314 (762)
.+++..-++.|..+ ..+.|.+.++...... ............+++.|...+|...... +..+|+ ++.+..
T Consensus 83 ~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~-----~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~ 157 (263)
T d1npea_ 83 GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR-----VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (263)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCE-----EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred EEEEeccCCeEEEeccCCCEEEEEecCCceEE-----EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence 67777666666533 4678888888766532 2333334678899999977776654322 223344 443321
Q ss_pred eeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceeccCCC
Q 040987 315 TFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKFLPRI 393 (762)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~~~~~ 393 (762)
.. ......-.....+++.+.++.|+.+. ..+.|...+++......+...
T Consensus 158 ~~------------------------------~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~ 207 (263)
T d1npea_ 158 RR------------------------------ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEG 207 (263)
T ss_dssp CE------------------------------EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEEC
T ss_pred ce------------------------------eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECC
Confidence 11 11112223557899998888887664 457899999887655433222
Q ss_pred CCCeEEEEeCCCCCeEEEEe-cCCcEEEEEcCCceEEEEEcc
Q 040987 394 GSPLLYFTESPDPSLSSISC-ADNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 394 ~~~v~~~~~s~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~ 434 (762)
......+++. +..|+... ..+.|...|..+++....+..
T Consensus 208 ~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~ 247 (263)
T d1npea_ 208 LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP 247 (263)
T ss_dssp CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC
T ss_pred CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECC
Confidence 2334567764 45555554 567899999998888777643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.88 E-value=0.0035 Score=64.90 Aligned_cols=305 Identities=11% Similarity=0.043 Sum_probs=158.2
Q ss_pred EEEEEecCCeEEEEecCCCceeccCC---CCCCeEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEccC
Q 040987 367 YLYSGGKEGVLVVWQLDTGKKKFLPR---IGSPLLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISGI 435 (762)
Q Consensus 367 ~l~s~~~dg~i~~wd~~~~~~~~~~~---~~~~v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~ 435 (762)
.++.++.|+.+.-.|.++|+...... ....-..+.-.| -+..++++.. .|.|..+|..+|+.+..+...
T Consensus 130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~ 209 (573)
T d1kb0a2 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (573)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeec
Confidence 56677788888888999888753211 111100111111 1233444332 467999999999999887543
Q ss_pred CCCCCCCC---------------------cccCce-eeEEEeCCCCEEEEeec-------------------CceEEEEE
Q 040987 436 KLPCPLPE---------------------EYKGLC-RDIAFNHDGGLVALRAE-------------------NYCIHFYS 474 (762)
Q Consensus 436 ~~~~~~~~---------------------~~~~~v-~~~~~s~~~~~l~~~~~-------------------dg~i~i~d 474 (762)
......+. ...+.+ ...++.++...+..... ...|.-.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld 289 (573)
T d1kb0a2 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD 289 (573)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEec
Confidence 32211100 000111 23566776666654331 12566778
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCC---CeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe--
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDG---SLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-- 549 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 549 (762)
..+++.....+......-..+. ...........++ ..++.++ .++.+.++|..+++.+.......
T Consensus 290 ~~tG~~~W~~q~~~~d~wd~d~-~~~~~l~~~~~~g~~~~~v~~~~---------k~G~l~~lDr~tGe~~~~~~~~~~~ 359 (573)
T d1kb0a2 290 PDTGKYKWHYQETPGDNWDYTS-TQPMILADIKIAGKPRKVILHAP---------KNGFFFVLDRTNGKFISAKNFVPVN 359 (573)
T ss_dssp TTTCCEEEEEESSTTCCSCCCC-CSCCEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCS
T ss_pred ccchheeecccccCcccccccc-cceeeecceecCCCceeeeeecc---------ccceeEEeccccccccccccccccc
Confidence 8888766554432221111111 1112222233333 2344454 78899999999998766543210
Q ss_pred ----ec-----------------------CCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeee
Q 040987 550 ----YE-----------------------PHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHA 602 (762)
Q Consensus 550 ----~~-----------------------~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 602 (762)
.. .+....-...+++|+..+++....+....++.....+......
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~-------- 431 (573)
T d1kb0a2 360 WASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGP-------- 431 (573)
T ss_dssp SEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCT--------
T ss_pred cccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCC--------
Confidence 00 0000011234677777777766666555555443322211110
Q ss_pred ecccC-CCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECC
Q 040987 603 VGSYK-KKAMTAAAFSADGSVLAVAAETVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMS 681 (762)
Q Consensus 603 ~~~~~-~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~ 681 (762)
.... ........+ +++.-.....-|.+.-||+.+|+.+-..+.. .+...-..+-.|.+|++++.|+. ++.+|.+
T Consensus 432 -~~~~~g~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~-~p~~gg~lstagglVF~G~~dg~--l~A~Da~ 506 (573)
T d1kb0a2 432 -GKPQSGTGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV-SPWNGGTLTTAGNVVFQGTADGR--LVAYHAA 506 (573)
T ss_dssp -TSTTGGGTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES-SSCCCCEEEETTTEEEEECTTSE--EEEEETT
T ss_pred -Cccccccccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC-CCCCCceEEEcCCEEEEECCCCe--EEEEECC
Confidence 0000 000000000 0000000000268999999999988777533 23222233446778888999987 9999999
Q ss_pred CCceeeEEEEeec
Q 040987 682 KLSISWSYLLHVE 694 (762)
Q Consensus 682 ~~~~~~~~~~~~~ 694 (762)
+|+.+|++.....
T Consensus 507 TGe~LW~~~~~~~ 519 (573)
T d1kb0a2 507 TGEKLWEAPTGTG 519 (573)
T ss_dssp TCCEEEEEECSSC
T ss_pred CCcEeEEEECCCC
Confidence 9999999998764
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.88 E-value=0.0083 Score=61.69 Aligned_cols=285 Identities=13% Similarity=0.080 Sum_probs=150.6
Q ss_pred CCEEEEEecCCeEEEEecCCCceeccCCCCC--CeEEEEeCC--CCCeEEEEec------CCcEEEEEcCCceEEEEEcc
Q 040987 365 GAYLYSGGKEGVLVVWQLDTGKKKFLPRIGS--PLLYFTESP--DPSLSSISCA------DNQVHLLKMPSMEIIRSISG 434 (762)
Q Consensus 365 g~~l~s~~~dg~i~~wd~~~~~~~~~~~~~~--~v~~~~~s~--~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~ 434 (762)
+..++.+..++.|.-.|..+|+......... ....+.-+| .+..++++.. .|.|.-+|.++|+.+..+..
T Consensus 117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t 196 (560)
T d1kv9a2 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (560)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence 3467778888999999999988753222111 001111111 1223333322 36799999999999988764
Q ss_pred CCCCCCCCCc--------------------ccCce-eeEEEeCCCCEEEEeec-------------------CceEEEEE
Q 040987 435 IKLPCPLPEE--------------------YKGLC-RDIAFNHDGGLVALRAE-------------------NYCIHFYS 474 (762)
Q Consensus 435 ~~~~~~~~~~--------------------~~~~v-~~~~~s~~~~~l~~~~~-------------------dg~i~i~d 474 (762)
.......+.. ....+ ..+++.+...++..+.. ...|.-.|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld 276 (560)
T d1kv9a2 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (560)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence 3221110000 00111 23677777776665431 23577788
Q ss_pred cCCCCceeeEEeecccccCCCCcceeEEEEEEecCCC---eEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEe--
Q 040987 475 LLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGS---LMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIV-- 549 (762)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~-- 549 (762)
+.+++.....+......-..+. .....-+.+..+++ .++.+. .++.+.++|..+++.+.......
T Consensus 277 ~~tG~~~W~~Q~~~~D~wd~d~-~~~~~l~~~~~~g~~~~~v~~~~---------k~G~~~~lDr~tG~~i~~~~~~~~~ 346 (560)
T d1kv9a2 277 PDTGKLAWHYQVTPGDSWDFTA-TQQITLAELNIDGKPRKVLMQAP---------KNGFFYVLDRTNGKLISAEKFGKVT 346 (560)
T ss_dssp TTTCCEEEEEESSTTCCSCCCC-CSCEEEEEEEETTEEEEEEEECC---------TTSEEEEEETTTCCEEEEEESSCCC
T ss_pred CCccceeEEEeccccccccccc-cceeeeeeeecCCceeeeeeecC---------ccceEEEEecCCCcccccccccccc
Confidence 8888877666543332211111 11122222333443 444455 78899999999988765443100
Q ss_pred -----e---------------------cCCCCC--ceEEEEEcCCCCeEEEEeCC-------------------------
Q 040987 550 -----Y---------------------EPHRDA--GISAVAFHPNRRAAVSSSYG------------------------- 576 (762)
Q Consensus 550 -----~---------------------~~h~~~--~v~~~~~spd~~~l~~~~~d------------------------- 576 (762)
. .+...+ .-...+++|+..+++....+
T Consensus 347 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (560)
T d1kv9a2 347 WAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFA 426 (560)
T ss_dssp SEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGG
T ss_pred cccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcc
Confidence 0 000000 01235567776666654422
Q ss_pred -----------CcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc-CCeEEEEeCCCCeEEEE
Q 040987 577 -----------GDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA-ETVITLWDPDRNVLVAV 644 (762)
Q Consensus 577 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~-d~~i~iwd~~~~~~~~~ 644 (762)
|.+.-||+.+++.+-.. .. .....+-.++-.|.+++.|+ ||.++.+|.++|+.+-.
T Consensus 427 ~~~~~p~~~~~G~l~A~D~~tGk~~W~~-------~~-----~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~ 494 (560)
T d1kv9a2 427 DATDVPAAVVSGALLAWDPVKQKAAWKV-------PY-----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ 494 (560)
T ss_dssp GCCCCCGGGCEEEEEEEETTTTEEEEEE-------EE-----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cccCCCCcccccceEEEeCCCCeEeeec-------cC-----CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence 23555566655543322 11 11111112233566888888 99999999999999987
Q ss_pred eccccCc-eeEEEEeCCCC-EEEEEEcCC
Q 040987 645 IGETLTP-IMNMSFVGSSE-YLVATSWGS 671 (762)
Q Consensus 645 l~~~~~~-v~~~~~s~dg~-~l~s~~~d~ 671 (762)
.+-.... -.-+.|..||+ +|+..+..|
T Consensus 495 ~~l~~~~~~~P~ty~~dGkqyv~v~aG~g 523 (560)
T d1kv9a2 495 FEAQSGIVAAPMTFELAGRQYVAIMAGWG 523 (560)
T ss_dssp EECSSCCCSCCEEEEETTEEEEEEEECCC
T ss_pred EECCCCccccCEEEEECCEEEEEEEeCCC
Confidence 7543221 12256667886 555554433
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.83 E-value=0.017 Score=57.14 Aligned_cols=258 Identities=11% Similarity=0.069 Sum_probs=138.2
Q ss_pred eEEEEeCCCCCeEEEEec-CC----cEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecC----
Q 040987 397 LLYFTESPDPSLSSISCA-DN----QVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAEN---- 467 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---- 467 (762)
+...++|||+++++.+-. +| .++++|+.+++.+...-.. .....++|++|++.|+....+
T Consensus 127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~-----------~~~~~~~W~~D~~~~~Y~~~~~~~~ 195 (430)
T d1qfma1 127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-----------VKFSCMAWTHDGKGMFYNAYPQQDG 195 (430)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-----------ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc-----------ccccceEEcCCCCEEEEEEeccccC
Confidence 445678999999987643 33 6999999999876532111 122578999999988765422
Q ss_pred ------------ceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEE
Q 040987 468 ------------YCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWV 535 (762)
Q Consensus 468 ------------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd 535 (762)
..+..+.+.+......+....... ...+..+..++++++++..... +......+.+.+
T Consensus 196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~------~~~~~~~~~s~d~~~l~i~~~~----~~~~~~~~~~~d 265 (430)
T d1qfma1 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE------PKWMGGAELSDDGRYVLLSIRE----GCDPVNRLWYCD 265 (430)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC------TTCEEEEEECTTSCEEEEEEEC----SSSSCCEEEEEE
T ss_pred cccccccccCCcceEEEEECCCCccccccccccccC------CceEEeeeccCCcceeeEEeec----cCCccEEEEEee
Confidence 257777777664433333222111 3346778889999998765421 100122344555
Q ss_pred ecCCCcee----EEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---CCcEEEEEcccccccccccCCceeeeeecccCC
Q 040987 536 SGTQNKEF----TLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKK 608 (762)
Q Consensus 536 ~~~~~~~~----~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (762)
........ .... ..... ..... ..-+.++.+++.... ++.|...++...... .|... ...+.
T Consensus 266 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~------~w~~v--i~~~~ 334 (430)
T d1qfma1 266 LQQESNGITGILKWVK-LIDNF-EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES------KWKVL--VPEHE 334 (430)
T ss_dssp GGGSSSSSCSSCCCEE-EECSS-SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGG------GCEEE--ECCCS
T ss_pred CCCcccccccccceeE-eeccc-ccceE-EEecCCceeecccCcccccceeEEecCCCCccc------cceEE--ecccC
Confidence 54322110 0000 01111 22222 222223334443332 245555566543321 22221 12234
Q ss_pred CCeEEEEEcCCCcEEEEE-c-C--CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEE--EEcCCCCeEEEEECCC
Q 040987 609 KAMTAAAFSADGSVLAVA-A-E--TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVA--TSWGSKPQLSVWNMSK 682 (762)
Q Consensus 609 ~~i~~~~~s~dg~~la~~-~-d--~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s--~~~d~~~~v~vwd~~~ 682 (762)
..+..-.++..+.+|+.. . + ..|++++..+++.........+.+..+...++...+.. .|.-...++.-+|+.+
T Consensus 335 ~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 335 KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (430)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred cceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence 445444444445566554 3 4 46899999988776655444455666655565554443 3333334599999999
Q ss_pred Ccee
Q 040987 683 LSIS 686 (762)
Q Consensus 683 ~~~~ 686 (762)
+++.
T Consensus 415 ~~~~ 418 (430)
T d1qfma1 415 EELE 418 (430)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.66 E-value=0.037 Score=57.02 Aligned_cols=63 Identities=10% Similarity=0.116 Sum_probs=49.7
Q ss_pred CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCCCeEEEEECCCCceeeEEEEeec
Q 040987 629 TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSKPQLSVWNMSKLSISWSYLLHVE 694 (762)
Q Consensus 629 ~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~~~v~vwd~~~~~~~~~~~~~~~ 694 (762)
|.|.-+|+.+|+.+-....+ .++..-..+-.|.++++++.|+. ++.+|.+||+++|++.....
T Consensus 466 G~l~AiD~~TG~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~--l~A~Da~TGe~LW~~~~~~~ 528 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGY--FKAFDAKSGKELWKFQTGSG 528 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES-SCCCSCCEEETTTEEEEECTTSE--EEEEETTTCCEEEEEECSSC
T ss_pred CeEEEEcCCCCcEEeecCCC-CCCccceeEEcCCeEEEeCCCCe--EEEEECCCCcEeEEEECCCC
Confidence 67888999999888777543 33333334456778888999987 99999999999999998765
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.02 Score=52.09 Aligned_cols=237 Identities=11% Similarity=-0.045 Sum_probs=140.2
Q ss_pred EEEEEeCCeEEEEEccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEee-cCCeEEEEeccCCceeecccccccccc
Q 040987 249 YFGIRKQRKLLIWKVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAGD-VTGRILIWRGFGDRTFATNDNKMNLNL 327 (762)
Q Consensus 249 ~la~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~-~dg~v~vw~~~~~~~~~~~~~~~~~~~ 327 (762)
+|..+....|+..++.+.+.. ........+.+++|.+..+.|.... .++.|.-.++.+.....
T Consensus 3 fLl~s~~~~I~~~~l~~~~~~------~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~---------- 66 (266)
T d1ijqa1 3 YLFFTNRHEVRKMTLDRSEYT------SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---------- 66 (266)
T ss_dssp EEEEECBSSEEEEETTSCCCE------EEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------
T ss_pred EEEEECCCeEEEEECCCCcce------eeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc----------
Confidence 566666677888999876543 2234556788999999887777654 45666666654321110
Q ss_pred cccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEEe-cCCeEEEEecCCCceec-cCCCCCCeEEEEeCCC
Q 040987 328 MNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSGG-KEGVLVVWQLDTGKKKF-LPRIGSPLLYFTESPD 405 (762)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~dg~i~~wd~~~~~~~~-~~~~~~~v~~~~~s~~ 405 (762)
.....+......+..+++.+-++.|+.+. ..+.|.+.+++...... ..........+++.|.
T Consensus 67 ----------------~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~ 130 (266)
T d1ijqa1 67 ----------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV 130 (266)
T ss_dssp -----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT
T ss_pred ----------------ceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc
Confidence 01112222334567889987676676654 45789999998776543 3334456788999887
Q ss_pred CCeEEEEec--CCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe-ecCceEEEEEcCCCCcee
Q 040987 406 PSLSSISCA--DNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR-AENYCIHFYSLLDDRGIS 482 (762)
Q Consensus 406 ~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~i~d~~~~~~~~ 482 (762)
..+++.... .+.|...++............- ....++++++.++.|..+ ...+.|...++......
T Consensus 131 ~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~----------~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~- 199 (266)
T d1ijqa1 131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENI----------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK- 199 (266)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCEEEEECSSC----------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred cCeEEEeccCCCcceeEeccCCCceeccccccc----------ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE-
Confidence 666665543 3456666766443333332211 456889999987776665 45678999998654332
Q ss_pred eEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEE
Q 040987 483 EVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTL 545 (762)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~ 545 (762)
.+..... . ......+++. +.+|..++. .++.|...+..++.....+
T Consensus 200 ~~~~~~~-~------~~~p~~lav~--~~~ly~td~--------~~~~I~~~~~~~g~~~~~~ 245 (266)
T d1ijqa1 200 TILEDEK-R------LAHPFSLAVF--EDKVFWTDI--------INEAIFSANRLTGSDVNLL 245 (266)
T ss_dssp EEEECTT-T------TSSEEEEEEE--TTEEEEEET--------TTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCC-c------ccccEEEEEE--CCEEEEEEC--------CCCeEEEEECCCCcceEEE
Confidence 2221111 0 1234566665 345555442 5567777777776654443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.024 Score=51.61 Aligned_cols=237 Identities=9% Similarity=-0.044 Sum_probs=138.9
Q ss_pred eEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEee-cCceEEEEEcCCCCceeeEEe
Q 040987 408 LSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRA-ENYCIHFYSLLDDRGISEVQV 486 (762)
Q Consensus 408 ~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~ 486 (762)
+|+.+ ....|+.+++.+.+....+.+. ..+.+++|++..+.|.... ..+.|.-.++...........
T Consensus 3 fLl~s-~~~~I~~~~l~~~~~~~~~~~~-----------~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~ 70 (266)
T d1ijqa1 3 YLFFT-NRHEVRKMTLDRSEYTSLIPNL-----------RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT 70 (266)
T ss_dssp EEEEE-CBSSEEEEETTSCCCEEEECSC-----------SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEE
T ss_pred EEEEE-CCCeEEEEECCCCcceeeeCCC-----------CceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEE
Confidence 34444 3456888898876554444332 4567899998877776653 456677666643221111111
Q ss_pred ecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCC
Q 040987 487 CERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 487 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd 566 (762)
..... ...+..+++.+-+..|..+.. ..+.|.+.++........+. .. ......++++|.
T Consensus 71 ~~~~~------~~~p~glAvD~~~~~lY~~d~--------~~~~I~v~~~~g~~~~~~~~-----~~-~~~P~~l~vd~~ 130 (266)
T d1ijqa1 71 VISRD------IQAPDGLAVDWIHSNIYWTDS--------VLGTVSVADTKGVKRKTLFR-----EN-GSKPRAIVVDPV 130 (266)
T ss_dssp EECSS------CSCCCEEEEETTTTEEEEEET--------TTTEEEEEETTSSSEEEEEE-----CT-TCCEEEEEEETT
T ss_pred EEeCC------CCCcceEEEeeccceEEEEec--------CCCEEEeEecCCceEEEEEc-----CC-CCCcceEEEEcc
Confidence 10000 234667899987777777653 56789999988765433332 22 446788999997
Q ss_pred CCeEEEEeC--CCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCeEE
Q 040987 567 RRAAVSSSY--GGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNVLV 642 (762)
Q Consensus 567 ~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~~~ 642 (762)
..+|..... .+.|.-.++......... ...-...+.+++.+.++.|..+. .+.|...++......
T Consensus 131 ~g~ly~~~~~~~~~I~r~~~dGs~~~~l~-----------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~ 199 (266)
T d1ijqa1 131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLV-----------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK 199 (266)
T ss_dssp TTEEEEEECSSSCEEEEEETTSCCEEEEE-----------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred cCeEEEeccCCCcceeEeccCCCceeccc-----------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEE
Confidence 666655443 345666666544332221 11235568899999888877764 789999999765433
Q ss_pred EEeccc--cCceeEEEEeCCCCEEEEEE-cCCCCeEEEEECCCCceeeEEEE
Q 040987 643 AVIGET--LTPIMNMSFVGSSEYLVATS-WGSKPQLSVWNMSKLSISWSYLL 691 (762)
Q Consensus 643 ~~l~~~--~~~v~~~~~s~dg~~l~s~~-~d~~~~v~vwd~~~~~~~~~~~~ 691 (762)
..+... .....++++. +.+|..+. .++ .|...+..+|+....+..
T Consensus 200 ~~~~~~~~~~~p~~lav~--~~~ly~td~~~~--~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 200 TILEDEKRLAHPFSLAVF--EDKVFWTDIINE--AIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp EEEECTTTTSSEEEEEEE--TTEEEEEETTTT--EEEEEETTTCCCCEEEEC
T ss_pred EEEeCCCcccccEEEEEE--CCEEEEEECCCC--eEEEEECCCCcceEEEEc
Confidence 333222 2234567766 34555554 334 488888888876544433
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.61 E-value=0.0058 Score=62.99 Aligned_cols=80 Identities=15% Similarity=0.108 Sum_probs=51.8
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
|.|.-+|+.+++.+.......+..+-.++-.+.++++++.|+.++.+|.++|+.+.++.-... ..-.-+.|
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~---------~~a~P~ty 514 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSG---------GIGSPMTY 514 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---------CCSCCEEE
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCC---------ceecceEE
Confidence 567888888888754333332222212223466788899999999999999999988865431 12233666
Q ss_pred eCCCC-EEEE
Q 040987 455 NHDGG-LVAL 463 (762)
Q Consensus 455 s~~~~-~l~~ 463 (762)
..||+ ++++
T Consensus 515 ~~dGkqYi~v 524 (571)
T d2ad6a1 515 SFKGKQYIGS 524 (571)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 77886 4444
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.52 E-value=0.022 Score=58.74 Aligned_cols=80 Identities=14% Similarity=0.091 Sum_probs=53.5
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
|.|.-||+.+++.........+...-.++..|.+++.++.||.++.+|.++|+.+.++.-... ..-.-+.|
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~---------~~a~P~tY 523 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG---------AIGYPMTY 523 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC---------CCSCCEEE
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC---------cccCCeEE
Confidence 578888999888754333333332222334577888899999999999999999998865432 11233566
Q ss_pred eCCCCE-EEE
Q 040987 455 NHDGGL-VAL 463 (762)
Q Consensus 455 s~~~~~-l~~ 463 (762)
..||+. +++
T Consensus 524 ~~dGkQYvav 533 (596)
T d1w6sa_ 524 THKGTQYVAI 533 (596)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 667763 443
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.38 E-value=0.057 Score=55.38 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=52.2
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
|.+.-||+.+++.+.......+...-..+-.|.++++++.|+.++.+|.++|+.+.++.-.... .-.-+.|
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~---------~~~P~ty 527 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGV---------VAAPSTY 527 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC---------CSCCEEE
T ss_pred ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCc---------cccCEEE
Confidence 4677788888887644333332222223346778888999999999999999999988754321 1122566
Q ss_pred eCCCC-EEEE
Q 040987 455 NHDGG-LVAL 463 (762)
Q Consensus 455 s~~~~-~l~~ 463 (762)
..+|+ ++++
T Consensus 528 ~~~GkQYv~v 537 (573)
T d1kb0a2 528 MVDGRQYVSV 537 (573)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 66787 4443
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.23 E-value=0.053 Score=51.10 Aligned_cols=196 Identities=11% Similarity=0.036 Sum_probs=110.2
Q ss_pred eeeEEEeCCCCEEEEeec------------CceEEEEEcCCCCcee-eEEeecccccCCCCcceeEEEEEE--ecCCC-e
Q 040987 449 CRDIAFNHDGGLVALRAE------------NYCIHFYSLLDDRGIS-EVQVCERNHQPGDDVTVVVTLVAL--SQDGS-L 512 (762)
Q Consensus 449 v~~~~~s~~~~~l~~~~~------------dg~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~--sp~g~-~ 512 (762)
..+++..|+|..+++++. .|.|.++|+.+..... .+......... .......+.+ .++|+ +
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~---~~f~PhGi~l~~~~dg~~~ 113 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDI---SSFNPHGISTFIDDDNTVY 113 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCG---GGCCEEEEEEEECTTCCEE
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCC---cceeccceeEEEcCCCcEE
Confidence 456788888877666532 4889999997654332 22222111000 0112333333 45666 3
Q ss_pred EEEEeeeccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeC---------------CC
Q 040987 513 MSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSY---------------GG 577 (762)
Q Consensus 513 l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~---------------dg 577 (762)
|++... .+...+|.+|++...............+. ....+++++..++.+++|-.. -+
T Consensus 114 L~vvnH------~~~~~~ieif~~~~~~~~l~~~~~v~~~~-~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 114 LLVVNH------PGSSSTVEVFKFQEEEKSLLHLKTIRHKL-LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp EEEEEC------STTCCEEEEEEEETTTTEEEEEEEECCTT-CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred EEEEec------cCCCceeEEEEEeCCCCeEEEEeecCCcc-ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 444431 01456899999876654333332222333 556889999999988887421 12
Q ss_pred cEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEcCCCcEEEEEc--CCeEEEEeCCCCe---EEEEeccccCce
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFSADGSVLAVAA--ETVITLWDPDRNV---LVAVIGETLTPI 652 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~dg~~la~~~--d~~i~iwd~~~~~---~~~~l~~~~~~v 652 (762)
...+|..+.+...... ..-...+.++++||+++|.++. .++|++|++.... ...... -....
T Consensus 187 ~g~v~~~~~~~~~~~~------------~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~p 253 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVA------------EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLV 253 (340)
T ss_dssp CEEEEEECSSCEEEEE------------EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEE
T ss_pred ceeEEEEcCCceEEEc------------CCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCC
Confidence 3344444443322111 1234678999999999998885 8999999987543 222222 22335
Q ss_pred eEEEEeC-CCCEEEEE
Q 040987 653 MNMSFVG-SSEYLVAT 667 (762)
Q Consensus 653 ~~~~~s~-dg~~l~s~ 667 (762)
-.+.+.+ +|.+.+.+
T Consensus 254 DNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 254 DNISVDPVTGDLWVGC 269 (340)
T ss_dssp EEEEECTTTCCEEEEE
T ss_pred CccEEecCCCEEEEEE
Confidence 6678876 45544444
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.16 E-value=0.18 Score=51.69 Aligned_cols=80 Identities=15% Similarity=0.102 Sum_probs=55.7
Q ss_pred CeEEEEecCCCceeccCCCCCCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEE
Q 040987 375 GVLVVWQLDTGKKKFLPRIGSPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAF 454 (762)
Q Consensus 375 g~i~~wd~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 454 (762)
|.|.-+|+.+++.+.......++..-.++..+.++++++.|+.++.+|.++|+.+.++.-.... .-.-+.|
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~---------~~~P~ty 536 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI---------VSPPITW 536 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC---------CSCCEEE
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc---------cccCEEE
Confidence 6788899999988654444443333233456778888999999999999999999998754421 1223677
Q ss_pred eCCCC-EEEE
Q 040987 455 NHDGG-LVAL 463 (762)
Q Consensus 455 s~~~~-~l~~ 463 (762)
..+|+ ++++
T Consensus 537 ~~~G~qYv~i 546 (582)
T d1flga_ 537 EQDGEQYLGV 546 (582)
T ss_dssp EETTEEEEEE
T ss_pred EECCEEEEEE
Confidence 78886 4444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.32 E-value=0.55 Score=45.73 Aligned_cols=97 Identities=9% Similarity=0.075 Sum_probs=55.2
Q ss_pred CCeEEEEecCCCce---e-ccCCCCCCeEEEEeCCCCCeEEEEe-cCC--cEEEEEcCCceEEEEEccCCCCCCCCCccc
Q 040987 374 EGVLVVWQLDTGKK---K-FLPRIGSPLLYFTESPDPSLSSISC-ADN--QVHLLKMPSMEIIRSISGIKLPCPLPEEYK 446 (762)
Q Consensus 374 dg~i~~wd~~~~~~---~-~~~~~~~~v~~~~~s~~~~~l~~~~-~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 446 (762)
++.|...++..... . .++.+...+..-.++..+.+|+... .++ .|++++..++..........
T Consensus 310 ~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~---------- 379 (430)
T d1qfma1 310 NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV---------- 379 (430)
T ss_dssp TCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS----------
T ss_pred cceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC----------
Confidence 35677777665433 2 2333444454444444445555543 444 58889998877655543322
Q ss_pred CceeeEEEeCCCCEEEEeec----CceEEEEEcCCCCc
Q 040987 447 GLCRDIAFNHDGGLVALRAE----NYCIHFYSLLDDRG 480 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~----dg~i~i~d~~~~~~ 480 (762)
+.+..+...++...+..... -.+++-+|+.+++.
T Consensus 380 ~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 380 GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 45555555555555544433 26889999988764
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.21 E-value=0.44 Score=44.50 Aligned_cols=175 Identities=10% Similarity=0.005 Sum_probs=92.1
Q ss_pred eEEEEeCCCCCeEEEEec------------CCcEEEEEcCCceEE-EE--EccCCCCCCCCCcccCceeeEEE--eCCCC
Q 040987 397 LLYFTESPDPSLSSISCA------------DNQVHLLKMPSMEII-RS--ISGIKLPCPLPEEYKGLCRDIAF--NHDGG 459 (762)
Q Consensus 397 v~~~~~s~~~~~l~~~~~------------d~~i~i~d~~~~~~~-~~--~~~~~~~~~~~~~~~~~v~~~~~--s~~~~ 459 (762)
...++..|+|..+++++. .|.+.++|+.+.+.. .. +.+.... ...-....+.+ .++++
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~-----~~~f~PhGi~l~~~~dg~ 111 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLD-----ISSFNPHGISTFIDDDNT 111 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSC-----GGGCCEEEEEEEECTTCC
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCC-----CcceeccceeEEEcCCCc
Confidence 345666777766665432 478999998764321 11 1211100 00012233333 45665
Q ss_pred -EEEEee---cCceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccc------cCCCcee
Q 040987 460 -LVALRA---ENYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAE------EGIGSLV 529 (762)
Q Consensus 460 -~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~------~~~~~d~ 529 (762)
+|++.. ...+|.+|++...........+.... ......++++..+|.++++-...... +......
T Consensus 112 ~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~-----~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~ 186 (340)
T d1v04a_ 112 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-----LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA 186 (340)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-----TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred EEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCc-----cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence 344443 34678888886554333332222111 13457899999999988884311000 0000112
Q ss_pred EEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEe-CCCcEEEEEccccc
Q 040987 530 CLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSS-YGGDFKVWICNDEL 588 (762)
Q Consensus 530 ~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~-~dg~i~iwd~~~~~ 588 (762)
...+|....+........ -..-+.++++||+++|+.+. ..+.|++|++....
T Consensus 187 ~g~v~~~~~~~~~~~~~~-------l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 187 WSFVTYYSPNDVRVVAEG-------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp CEEEEEECSSCEEEEEEE-------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ceeEEEEcCCceEEEcCC-------CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 334454444443222211 23568899999998776654 56789999987543
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.43 E-value=1 Score=41.77 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=111.4
Q ss_pred CCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCceeeEEEe------CCCCEEEEeecC----ceEEEE
Q 040987 404 PDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLCRDIAFN------HDGGLVALRAEN----YCIHFY 473 (762)
Q Consensus 404 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s------~~~~~l~~~~~d----g~i~i~ 473 (762)
|+..+++.....+.+++||+. |+.+..+.. +.+..+..- ....-+++++.. ..|.+|
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~------------Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~ 104 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHT------------GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIY 104 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETT-CCEEEECCS------------SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEE
T ss_pred cCccEEEEEcCcCCEEEEcCC-CcEEEeccc------------CCcCccccccccccCCcceEEEEEeCCcCcceeEEEE
Confidence 344566666666779999996 777777643 344444332 222235555532 368788
Q ss_pred EcCCCC-ceeeEEeecccccCCCCcceeEEEEEE--ecC-CCeEEEEeeeccccCCCceeEEEEEEecCCC---ceeEEE
Q 040987 474 SLLDDR-GISEVQVCERNHQPGDDVTVVVTLVAL--SQD-GSLMSTVDIKLAEEGIGSLVCLKFWVSGTQN---KEFTLS 546 (762)
Q Consensus 474 d~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~--sp~-g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~---~~~~~~ 546 (762)
.+.... .+..+... ..+.......+..+++ ++. |.+.+.... .++.+..|.+.... ....+.
T Consensus 105 ~id~~~~~l~~~~~~---~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~--------k~G~v~q~~l~~~~~g~v~~~lv 173 (353)
T d1h6la_ 105 AIDGKNGTLQSITDP---NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG--------KEGEFEQYELNADKNGYISGKKV 173 (353)
T ss_dssp EEETTTTEEEECSCS---SSCEECSSSSCCCEEEEECTTTCCEEEEEEC--------SSSEEEEEEEEECTTSSEEEEEE
T ss_pred EecCccccccccccc---ccccccccCcceEEEEEecCCCCeEEEEEEc--------CCceEEEEEEEcCCCCceeeEee
Confidence 775322 12111110 0000000123556666 664 554444432 67888888774322 212111
Q ss_pred EEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCceeeeeecccCCCCeEEEEEc--CCCc-EE
Q 040987 547 TIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWSCHAVGSYKKKAMTAAAFS--ADGS-VL 623 (762)
Q Consensus 547 ~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~dg~-~l 623 (762)
. .+ .- ...+..+++.+....|..+-++..++.++.......... .............+..++.- +++. ||
T Consensus 174 r-~f-~~-~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~----~i~~~~g~~l~~D~EGlaiy~~~~~~Gyl 246 (353)
T d1h6la_ 174 R-AF-KM-NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGT----VIDRADGRHLTPDIEGLTIYYAADGKGYL 246 (353)
T ss_dssp E-EE-EC-SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCE----EEEECSSSSCCSCEEEEEEEECGGGCEEE
T ss_pred e-cc-CC-CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccce----eeecccCccccCCccccEEEEcCCCCeEE
Confidence 1 11 12 457889999999889999888766655555322111000 00001111235667777653 3333 66
Q ss_pred EEEc--CCeEEEEeCCCC-eEEEEe
Q 040987 624 AVAA--ETVITLWDPDRN-VLVAVI 645 (762)
Q Consensus 624 a~~~--d~~i~iwd~~~~-~~~~~l 645 (762)
++++ +++..|||..+. +.+..+
T Consensus 247 ivSsQG~n~f~vydr~~~~~~~g~F 271 (353)
T d1h6la_ 247 LASSQGNSSYAIYERQGQNKYVADF 271 (353)
T ss_dssp EEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred EEEcCCCCeEEEEecCCCccccceE
Confidence 5554 899999999874 566554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.89 E-value=1.5 Score=40.64 Aligned_cols=120 Identities=12% Similarity=0.136 Sum_probs=73.0
Q ss_pred CeEEEEe--CCC-CC-eEEEEecCCcEEEEEcC---Cc----eEEEEEccCCCCCCCCCcccCceeeEEEeCCCCEEEEe
Q 040987 396 PLLYFTE--SPD-PS-LSSISCADNQVHLLKMP---SM----EIIRSISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALR 464 (762)
Q Consensus 396 ~v~~~~~--s~~-~~-~l~~~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 464 (762)
.+..+|+ ++. |. ++++...+|.+..|.+. .+ +.++.+... ..+..+.+......|..+
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~-----------~q~EGCVvDde~~~Lyis 197 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN-----------SQTEGMAADDEYGSLYIA 197 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS-----------SCEEEEEEETTTTEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC-----------CccceEEEeCCCCcEEEe
Confidence 3555665 664 44 34555668888888763 22 344444432 467899999999999999
Q ss_pred ecCceEEEEEcCCCCc--eeeEEeecccccCCCCcceeEEEEEEec--CCC-eEEEEeeeccccCCCceeEEEEEEecCC
Q 040987 465 AENYCIHFYSLLDDRG--ISEVQVCERNHQPGDDVTVVVTLVALSQ--DGS-LMSTVDIKLAEEGIGSLVCLKFWVSGTQ 539 (762)
Q Consensus 465 ~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~g~-~l~~~~~~~~~~~~~~d~~i~iwd~~~~ 539 (762)
-++.-++.++...... ...+...... .....+..+++-. ++. +|++++. ++++..+||..+.
T Consensus 198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~-----~l~~D~EGlaiy~~~~~~GylivSsQ--------G~n~f~vydr~~~ 264 (353)
T d1h6la_ 198 EEDEAIWKFSAEPDGGSNGTVIDRADGR-----HLTPDIEGLTIYYAADGKGYLLASSQ--------GNSSYAIYERQGQ 264 (353)
T ss_dssp ETTTEEEEEESSTTSCSCCEEEEECSSS-----SCCSCEEEEEEEECGGGCEEEEEEEG--------GGTEEEEEESSTT
T ss_pred cCccceEEEEeccCCCccceeeecccCc-----cccCCccccEEEEcCCCCeEEEEEcC--------CCCeEEEEecCCC
Confidence 8887777777653221 1111111111 1145677777543 333 6666664 7889999999864
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=93.95 E-value=0.7 Score=45.14 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=38.2
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCceeEEEEE---eecCCCCCceEEEEEcCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKEFTLSTI---VYEPHRDAGISAVAFHPN 566 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~---~~~~h~~~~v~~~~~spd 566 (762)
...+|+|.|||+++++-- ..|.|++++..++.... +... ....+.......++|+|+
T Consensus 28 ~P~~la~~pdg~llVter---------~~G~i~~v~~~~g~~~~-i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 28 KPHALLWGPDNQIWLTER---------ATGKILRVNPESGSVKT-VFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp SEEEEEECTTSCEEEEET---------TTCEEEEECTTTCCEEE-EEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CceEEEEeCCCeEEEEEe---------cCCEEEEEECCCCcEee-cccCCccccccCCCCceeeEEeCCC
Confidence 478999999999888763 35889998877665432 2211 111222457789999995
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=4.7 Score=37.53 Aligned_cols=187 Identities=7% Similarity=-0.062 Sum_probs=102.9
Q ss_pred CceeeEEEeCCCCEEEEeecCceEEEEEcCCC-------CceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeee
Q 040987 447 GLCRDIAFNHDGGLVALRAENYCIHFYSLLDD-------RGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIK 519 (762)
Q Consensus 447 ~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~ 519 (762)
....-+++++...+++.++.++ +.+..+..- .....+..... -..|..++|+.| .++...
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~--------ip~v~~vafs~d--~l~v~~-- 103 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKE--------IPDVIFVCFHGD--QVLVST-- 103 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEE--------CTTEEEEEEETT--EEEEEE--
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccC--------CCCeEEEEeeCC--EEEEEe--
Confidence 4567789999888888887775 667653211 00001100000 224788999755 455543
Q ss_pred ccccCCCceeEEEEEEecCCCceeEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEEcccccccccccCCcee
Q 040987 520 LAEEGIGSLVCLKFWVSGTQNKEFTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWICNDELQQKDLQSSGWS 599 (762)
Q Consensus 520 ~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 599 (762)
++.+..++............ - ...+.++.++|. .++....++.+.++++..+....... ...
T Consensus 104 --------~~~l~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~--~v~ 165 (381)
T d1xipa_ 104 --------RNALYSLDLEELSEFRTVTS-----F-EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ--NVT 165 (381)
T ss_dssp --------SSEEEEEESSSTTCEEEEEE-----C-SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE--SEE
T ss_pred --------CCCEEEEEeecccccccccc-----c-cccccceecCCc--eeEEEecCCCEEEEEeccCccccccC--Ccc
Confidence 34677788776554433322 1 456788888775 56666778999999998875433221 000
Q ss_pred eeeecccCCCCeEEEEEcCCCcEEEEEcCCeEEEE-eCCCCeEEEEeccccCceeEEEEeCCCCEEEEEE
Q 040987 600 CHAVGSYKKKAMTAAAFSADGSVLAVAAETVITLW-DPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATS 668 (762)
Q Consensus 600 ~~~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iw-d~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~ 668 (762)
+. .-...+.+++|++.|+.++++.++...+- ++.....+.........|.++.|-.+..++++-+
T Consensus 166 ~~----~~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~ 231 (381)
T d1xipa_ 166 SF----DVTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 231 (381)
T ss_dssp EE----EECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred eE----EecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence 10 01355777888887777776653322221 1111100000011233578888888777766553
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.74 E-value=5.2 Score=37.25 Aligned_cols=142 Identities=10% Similarity=0.006 Sum_probs=85.7
Q ss_pred cccCCceeecCCCEEEEEeCCEEEEEEcccceEEeeecCCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCc
Q 040987 74 YVSSPPAFSNDVKRLLVCTSNTVSIFSTSTGLQISSLEGHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVP 153 (762)
Q Consensus 74 ~v~~~~~~s~dg~~la~~~~~~i~iwd~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~ 153 (762)
.|.. ++|+.| .|+...++.+..++..+-........-..++..+.+.|.. ++....++.+-++++.++
T Consensus 88 ~v~~-vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~---------~~l~~~~~~~~~~~l~~~ 155 (381)
T d1xipa_ 88 DVIF-VCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT---------LVILNSVNDLSALDLRTK 155 (381)
T ss_dssp TEEE-EEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE---------EEEEETTSEEEEEETTTC
T ss_pred CeEE-EEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCCce---------eEEEecCCCEEEEEeccC
Confidence 4666 888755 5777777888888876544333333345567888887764 224555788999999887
Q ss_pred ceEEEEEeccceEEEeecccccCCcccCCCCCceEEEEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeec
Q 040987 154 ELLKTIDVKFSIFSMVIPSLLRQPAQSDEKPPKLFAYLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLA 233 (762)
Q Consensus 154 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~ 233 (762)
+..... ..+.+..+
T Consensus 156 ~~~~~~---~~v~~~~~--------------------------------------------------------------- 169 (381)
T d1xipa_ 156 STKQLA---QNVTSFDV--------------------------------------------------------------- 169 (381)
T ss_dssp CEEEEE---ESEEEEEE---------------------------------------------------------------
T ss_pred cccccc---CCcceEEe---------------------------------------------------------------
Confidence 643221 12222211
Q ss_pred cCCCceEEEECCCCCEEEEEeCCeEEEE-EccCchhhhheeeeeeeccCcCeEEEEEcCCCcEEEEe
Q 040987 234 EMKEPQVITISSSGKYFGIRKQRKLLIW-KVPDVEAERVVMRKITLHHTKKLTVLAFHPTQRIVAAG 299 (762)
Q Consensus 234 ~~~~v~~~~~spdg~~la~~~~~~i~iw-d~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 299 (762)
.+.+.+++|++.|+.++++.++...+- ++...... .........|.++.|-.+..++++-
T Consensus 170 -~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~-----~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 170 -TNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSEL-----EELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp -CSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHH-----HTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred -cCCceEEEEeCCcEEEEEeCCCceeeccCCCCcccc-----CCCcCCCcceeEEEEecCceEEEEE
Confidence 345778999999998887755544332 22222211 1111234568899999877766654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=3 Score=37.24 Aligned_cols=66 Identities=8% Similarity=0.071 Sum_probs=38.7
Q ss_pred CCcEEEEEc-C-----CeEEEEeCCCCeEEEEeccccCceeEEEEeCCCCEEEEEEcCCC---CeEEEEECCCCc
Q 040987 619 DGSVLAVAA-E-----TVITLWDPDRNVLVAVIGETLTPIMNMSFVGSSEYLVATSWGSK---PQLSVWNMSKLS 684 (762)
Q Consensus 619 dg~~la~~~-d-----~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~dg~~l~s~~~d~~---~~v~vwd~~~~~ 684 (762)
++++++.|+ + .....+|..+.+....-.........-+..-++++++.++.++. ..|.+||+.+.+
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 456666654 2 46788888887654432222222222223347888888876553 247889988764
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=8.2 Score=34.09 Aligned_cols=104 Identities=10% Similarity=0.010 Sum_probs=52.3
Q ss_pred CCCEEEEEecC-----CeEEEEecCCCceeccCCCCCC--eEEEEeCCCCCeEEEEecC-----CcEEEEEcCCceEEEE
Q 040987 364 DGAYLYSGGKE-----GVLVVWQLDTGKKKFLPRIGSP--LLYFTESPDPSLSSISCAD-----NQVHLLKMPSMEIIRS 431 (762)
Q Consensus 364 ~g~~l~s~~~d-----g~i~~wd~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 431 (762)
++..++.++.+ ..+..||..+.+.......... ..+... .+++.++.++.+ .....+|..+.+....
T Consensus 148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~ 226 (288)
T d1zgka1 148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 226 (288)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred eecceEecCcccccccceEEEeeccccccccccccccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecc
Confidence 34455555543 4578888887765433322211 112222 234555555433 3567788776554332
Q ss_pred EccCCCCCCCCCcccCceeeEEEeCCCCEEEEeecCc-----eEEEEEcCCC
Q 040987 432 ISGIKLPCPLPEEYKGLCRDIAFNHDGGLVALRAENY-----CIHFYSLLDD 478 (762)
Q Consensus 432 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~i~d~~~~ 478 (762)
-.... ......+...++++++.|+.++ .+.+||+.++
T Consensus 227 ~~~p~----------~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 227 APMKH----------RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp CCCSS----------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred cCccC----------cccceEEEEECCEEEEEecCCCCeecceEEEEECCCC
Confidence 11111 1111122233678888876543 4788888765
|
| >d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 5-bladed beta-propeller superfamily: Tachylectin-2 family: Tachylectin-2 domain: Tachylectin-2 species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]
Probab=87.76 E-value=5.9 Score=32.08 Aligned_cols=144 Identities=14% Similarity=0.127 Sum_probs=81.1
Q ss_pred eEEEEEEecCCCeEEEEeeeccccCCCceeEEEEEEecCCCce--eEEEEEeecCCCCCceEEEEEcCCCCeEEEEeCCC
Q 040987 500 VVTLVALSQDGSLMSTVDIKLAEEGIGSLVCLKFWVSGTQNKE--FTLSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGG 577 (762)
Q Consensus 500 ~v~~~~~sp~g~~l~~~~~~~~~~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg 577 (762)
.+.-++|||+|++.++-. +.++.=.+.+.... ....+.+-.+- =+...-+.|+|.|-+.++. ++
T Consensus 41 n~~~i~fsP~G~LyaVr~-----------~~lY~Gp~~s~~nq~wf~~atrIG~gg-Wn~FkflffdP~G~LyaVt--~~ 106 (235)
T d1tl2a_ 41 NFKFLFLSPGGELYGVLN-----------DKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAVS--KD 106 (235)
T ss_dssp TCSEEEECTTSCEEEEET-----------TEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEEE--TT
T ss_pred ceeEEEECCCCcEEEEEC-----------CeEEECCCCCcchHHHHHhhhhcccCc-ccceEEEEECCCceEEEec--Cc
Confidence 356799999999998874 34444333332211 11111111222 2345668899998766655 35
Q ss_pred cEEEEEcccccccccccCCceeee--eecccCCCCeEEEEEcCCCcEEEEEcCCeEEEEeCCCC---------eEEEEec
Q 040987 578 DFKVWICNDELQQKDLQSSGWSCH--AVGSYKKKAMTAAAFSADGSVLAVAAETVITLWDPDRN---------VLVAVIG 646 (762)
Q Consensus 578 ~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~s~dg~~la~~~d~~i~iwd~~~~---------~~~~~l~ 646 (762)
.+|.-...... ...|... .+....=..+..+-|.|+|.+-++.+| .++-+....+ +.+. +
T Consensus 107 --~LYr~~pPtn~----~q~W~g~a~~vG~~gw~df~~lFFdP~G~LYaV~~~-~l~k~~pP~~~~d~WL~~st~ig--r 177 (235)
T d1tl2a_ 107 --KLYKASPPQSD----TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVHGQ-QFYKALPPVSNQDNWLARATKIG--Q 177 (235)
T ss_dssp --EEEEESCCCST----TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEETT-EEEEECCCSSTTCCHHHHCEEEE--S
T ss_pred --ceecCCcCccc----chhhhhhhhhhccCCcCceeEEEECCCceEEEEECC-cEEEcCCCCCCCchhhhhhhhhc--c
Confidence 44543221111 1122211 123334456778999999999988666 4666654332 2332 3
Q ss_pred cccCceeEEEEeCCCCEEEE
Q 040987 647 ETLTPIMNMSFVGSSEYLVA 666 (762)
Q Consensus 647 ~~~~~v~~~~~s~dg~~l~s 666 (762)
++-....-+.|+|||.+-..
T Consensus 178 ~~w~~~~fi~Fs~dG~L~~v 197 (235)
T d1tl2a_ 178 GGWDTFKFLFFSSVGTLFGV 197 (235)
T ss_dssp SSGGGEEEEEECTTSCEEEE
T ss_pred CcccCceEEEECCCCcEEEE
Confidence 56666778999999876655
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.46 E-value=7.7 Score=32.04 Aligned_cols=222 Identities=14% Similarity=0.115 Sum_probs=114.5
Q ss_pred eeEEEEecCCCeEEEEecCCcceeeeecCcccccCCceeecC----CCEEEEEeC-------CEEEEEEcccceEEeeec
Q 040987 43 SFIFAVARSSGLCRTAEYPAVNSKMIRGGRSYVSSPPAFSND----VKRLLVCTS-------NTVSIFSTSTGLQISSLE 111 (762)
Q Consensus 43 ~~~~a~~~~~g~i~~~~~~~~~~~~~~~h~~~v~~~~~~s~d----g~~la~~~~-------~~i~iwd~~~~~~~~~l~ 111 (762)
.+++.++.+.|.+.++-+..++.+.+.. .+ ++++++ -.++..+-| ..|.+-+++....-..+.
T Consensus 26 d~ll~~~~seG~vni~~l~g~~~vkLtk--eP----I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~ 99 (313)
T d2hu7a1 26 DKLLVVGFSEGSVNAYLYDGGETVKLNR--EP----INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLE 99 (313)
T ss_dssp TEEEEEEEETTEEEEEEESSSSCEECCS--SC----CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECT
T ss_pred CcEEEEEeccceEEEEEEeCCEEEEEec--cc----ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEec
Confidence 5578888889999999988877766533 22 333332 234444432 244444543212222233
Q ss_pred CCccceeEEEEeCCCCcccceeeeEEeeecCCeEEEEeCCCcceEEEEEecc--ceEEEeecccccCCcccCCCCCceEE
Q 040987 112 GHKAPVTTVIVVPASTPATKILSYCWTASLDGTIKYWDFSVPELLKTIDVKF--SIFSMVIPSLLRQPAQSDEKPPKLFA 189 (762)
Q Consensus 112 ~h~~~V~~v~~s~~~~~~~~l~~~l~s~s~d~~i~vWd~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~ 189 (762)
.. .+|.-+...-|++ +.+++|+......+|-++.|++.+-..... -|+.+. +.-+--+.
T Consensus 100 sp-k~vRI~S~~yddk------~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~------------~d~I~G~g 160 (313)
T d2hu7a1 100 AV-KPMRILSGVDTGE------AVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR------------GDLIAGLG 160 (313)
T ss_dssp TS-CSBEEEEEEECSS------CEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE------------TTEEEEEE
T ss_pred CC-ceEEEEEeeecCc------eEEEecccCCceEEEEEeCCceeeeccCCCcceEEecc------------CCeEEEEe
Confidence 22 2244444444554 578899888889999998887654333221 222221 00000011
Q ss_pred EEEeeeccccCcCCccCCCCCCccccEEEEecCCccccceeeeccCCCceEEEECCCCCEEEEE---eCCeEEEEEccCc
Q 040987 190 YLSVEDTRETTKSHKKEPRPNTMNGRICKCNLTESRLAGGVTLAEMKEPQVITISSSGKYFGIR---KQRKLLIWKVPDV 266 (762)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~d~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~spdg~~la~~---~~~~i~iwd~~~~ 266 (762)
+...+....- ++--..|.+++++... +.++...++++.+..+-- ......-+|+.++
T Consensus 161 ~~~g~~~sfF--------~adl~SG~lri~tpke------------GS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~ 220 (313)
T d2hu7a1 161 FFGGGRVSLF--------TSNLSSGGLRVFDSGE------------GSFSSASISPGMKVTAGLETAREARLVTVDPRDG 220 (313)
T ss_dssp EEETTEEEEE--------EEETTTEEEEEECCSS------------EEEEEEEECTTSCEEEEEEESSCEEEEEECTTTC
T ss_pred eecCCcceEE--------EEecccCCEEEecCCC------------CcccceeEccCceeeeccCCCCceEEEEEecccC
Confidence 1110000000 1111245555555444 445566777877774321 1223334577755
Q ss_pred hhhhhe--eeeeeeccCcCeEEEEEcCCCcEEEEeecCCeEEEEe
Q 040987 267 EAERVV--MRKITLHHTKKLTVLAFHPTQRIVAAGDVTGRILIWR 309 (762)
Q Consensus 267 ~~~~~~--~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vw~ 309 (762)
+..... -+.+..-..-.|+-+-+.|++++++.+-.||.-+++.
T Consensus 221 ~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 221 SVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp CEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred ceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence 533000 0011112233566677999999989999999999986
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=85.69 E-value=8.4 Score=31.79 Aligned_cols=236 Identities=14% Similarity=0.113 Sum_probs=113.4
Q ss_pred CCcEEEEeecCCeEEEEeccCCceeecccccccccccccccCCCCcccCCccccceeeeccccceeEEEEecCCCEEEEE
Q 040987 292 TQRIVAAGDVTGRILIWRGFGDRTFATNDNKMNLNLMNNEEERPGVRDNDDADLCTTWHWHPSEVSVLIFSSDGAYLYSG 371 (762)
Q Consensus 292 ~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 371 (762)
+.+.|+++...|.+.++-+.+++........... ....|. .+--+-|-.| +.-|
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~~vkLtkePI~~----------------------~~~Pk~-~ldfi~f~RD---V~kG 78 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGETVKLNREPINS----------------------VLDPHY-GVGRVILVRD---VSKG 78 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSSCEECCSSCCSE----------------------ECEECT-TBSEEEEEEE---CSTT
T ss_pred CCcEEEEEeccceEEEEEEeCCEEEEEecccccC----------------------cCCCcc-CcceEEEEee---hhcC
Confidence 4557888888999999988887655422111110 111111 1111122111 0001
Q ss_pred ecCCeEEEEecCC-CceeccCCCC-CCeEEEEeCCCCCeEEEEecCCcEEEEEcCCceEEEEEccCCCCCCCCCcccCce
Q 040987 372 GKEGVLVVWQLDT-GKKKFLPRIG-SPLLYFTESPDPSLSSISCADNQVHLLKMPSMEIIRSISGIKLPCPLPEEYKGLC 449 (762)
Q Consensus 372 ~~dg~i~~wd~~~-~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v 449 (762)
-.-..|+.-++.. |+...+.... -.|.+++.. |.+..++|+..+...+|-++.|++.+...-..... ..+.....|
T Consensus 79 kE~Hai~~~Nlk~~GEE~~i~spk~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsF-VtDI~~d~I 156 (313)
T d2hu7a1 79 AEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGF-VSDIRGDLI 156 (313)
T ss_dssp SCCEEEEEEETTSTTCEEECTTSCSBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEE-EEEEETTEE
T ss_pred cceeeEEEEccCCCCeeeEecCCceEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcce-EEeccCCeE
Confidence 1223456666653 3332222222 345555542 34556677778888888888776544332211000 000000122
Q ss_pred eeEEE-eCCCCEEEEeec-CceEEEEEcCCCCceeeEEeecccccCCCCcceeEEEEEEecCCCeEEEEeeeccccCCCc
Q 040987 450 RDIAF-NHDGGLVALRAE-NYCIHFYSLLDDRGISEVQVCERNHQPGDDVTVVVTLVALSQDGSLMSTVDIKLAEEGIGS 527 (762)
Q Consensus 450 ~~~~~-s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~~~~~~~~~~ 527 (762)
..+.+ .+..+-++++.- .|.+++++.. .+.++.....++.+. ++.- ...+.
T Consensus 157 ~G~g~~~g~~~sfF~adl~SG~lri~tpk---------------------eGS~~~ay~~~gnKV-~sdy-----Et~gE 209 (313)
T d2hu7a1 157 AGLGFFGGGRVSLFTSNLSSGGLRVFDSG---------------------EGSFSSASISPGMKV-TAGL-----ETARE 209 (313)
T ss_dssp EEEEEEETTEEEEEEEETTTEEEEEECCS---------------------SEEEEEEEECTTSCE-EEEE-----EESSC
T ss_pred EEEeeecCCcceEEEEecccCCEEEecCC---------------------CCcccceeEccCcee-eecc-----CCCCc
Confidence 22222 222222333333 5556666543 455666677777666 3332 11112
Q ss_pred eeEEEEEEecCCCceeE-EEEEeecCCCCCceEEEEEcCCCCeEEEEeCCCcEEEEE
Q 040987 528 LVCLKFWVSGTQNKEFT-LSTIVYEPHRDAGISAVAFHPNRRAAVSSSYGGDFKVWI 583 (762)
Q Consensus 528 d~~i~iwd~~~~~~~~~-~~~~~~~~h~~~~v~~~~~spd~~~l~~~~~dg~i~iwd 583 (762)
..-| -+|+++++.... ++..-+.......|+=+-+.|++++++.+-.||.-++|.
T Consensus 210 sywi-t~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~ 265 (313)
T d2hu7a1 210 ARLV-TVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI 265 (313)
T ss_dssp EEEE-EECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE
T ss_pred eEEE-EEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee
Confidence 2334 457766543211 110000001033566667999999999999999988886
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.90 E-value=17 Score=34.67 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=27.3
Q ss_pred CcCeEEEEEcCCCcEEEEeecCCeEEEEeccCCc
Q 040987 281 TKKLTVLAFHPTQRIVAAGDVTGRILIWRGFGDR 314 (762)
Q Consensus 281 ~~~v~~~~~sp~~~~l~~~~~dg~v~vw~~~~~~ 314 (762)
-...++|+|.||+++|++--.+|.|++++..++.
T Consensus 26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence 4577899999999988776457999999876654
|