Citrus Sinensis ID: 040995

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MERSEDSIKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRTEW
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEcHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MERSEDSIKGLTKLKMLITKLQRGLfsasredvdgksggatvvpkdvkkGHFAVVAEKGGKPKRFVLElgylsnpeFLSLLEQAEQEYGfqqkgilavpcppeelQNVLKYKKRHRRIRTEW
Flexible Loop (DISEMBL)
mersedsikgLTKLKMLITKLQRGLFsasredvdgksggatvvpkdvkKGHFAvvaekggkpkRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILavpcppeelqnvlkykkrhrrirtew
Low Complexity Region (SEG)
MERSEDSIKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRTEW
Disordered region (IsUnstruct)
***********TKLKMLITKLQRGLF***************VVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLK************
Disordered Region (DISOPRED)
****************LITKLQ***************************GHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVL*************
Disordered Region (DISEMBL)
********KGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKK*********
Disordered Region (DISPRO)
****EDSIKGLTKLKMLITKLQRGLFSA*************VVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRH*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERSEDSIKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRTEW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
P33083	90	Auxin-induced protein 6B	no	no	0.524	0.711	0.402	2e-07
P33079	93	Auxin-induced protein 10A	no	no	0.524	0.688	0.432	3e-07
P33082	82	Auxin-induced protein X15	no	no	0.5	0.743	0.421	3e-06
P33081	82	Auxin-induced protein 15A	no	no	0.5	0.743	0.421	4e-06
P33080	92	Auxin-induced protein X10	no	no	0.524	0.695	0.373	1e-05
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.5	0.663	0.390	4e-05

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEE 104
           DV+KG+ AV    G K +RFV+ + YL+ P F  LL QAE+E+G+    G L +PC  + 
Sbjct: 24  DVEKGYLAVYV--GEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDV 81

Query: 105 LQNVLKY 111
            Q++  +
Sbjct: 82  FQHITSF 88

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 3/67 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEE 104
           DV KG+ AV    G K +RF + + YL+ P F  LL QAE+E+G+    G L +PC  EE
Sbjct: 25  DVPKGYAAVYV--GDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 82

Query: 105 LQNVLKY 111
             NV  +
Sbjct: 83  FLNVTAH 89

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
           D  KG+ AV    G K KRFV+ + Y++ P F  LL QAE+E+G+    G L +PC  E 
Sbjct: 16  DAPKGYLAVYV--GEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEV 73

Query: 105 LQNV 108
            Q +
Sbjct: 74  FQRI 77

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
           D  KG+ AV    G K KRFV+ + YL+ P F  LL QAE+E+G+    G L +PC  + 
Sbjct: 16  DAPKGYLAVYV--GEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDV 73

Query: 105 LQNV 108
            Q +
Sbjct: 74  FQCI 77

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
           +V KG+  V    G K +RF++ + YL+ P F  LL QAE+E+G+    G L +PC  +E
Sbjct: 24  EVPKGYLVVYV--GDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDE 81

Query: 105 LQNVLKY 111
              V  +
Sbjct: 82  FLTVTSH 88

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 3/64 (4%)

Query: 46  DVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPEE 104
           D  KG+ AV    G   KRFV+ + +L+ P F  LL QAE+E+G+    G L +PC  + 
Sbjct: 24  DAPKGYLAVYV--GENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDL 81

Query: 105 LQNV 108
            Q++
Sbjct: 82  FQHI 85

Vigna radiata var. radiata (taxid: 3916)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
255556926	129	calmodulin binding protein, putative [Ri	0.959	0.906	0.564	4e-33
224069539	128	SAUR family protein [Populus trichocarpa	0.991	0.945	0.573	1e-29
224140209	125	SAUR family protein [Populus trichocarpa	0.959	0.936	0.56	7e-29
359481402	124	PREDICTED: indole-3-acetic acid-induced	0.901	0.887	0.525	6e-24
225436516	143	PREDICTED: uncharacterized protein LOC10	0.926	0.790	0.441	5e-21
388281862	146	putative auxin-responsive family protein	0.868	0.726	0.495	6e-21
356541940	136	PREDICTED: auxin-induced protein 6B-like	0.893	0.801	0.472	7e-21
449451219	143	PREDICTED: uncharacterized protein LOC10	0.901	0.769	0.470	7e-21
356503722	107	PREDICTED: auxin-induced protein 10A5-li	0.737	0.841	0.557	2e-20
356570764	106	PREDICTED: auxin-induced protein 10A5-li	0.786	0.905	0.5	2e-20

>gi|255556926|ref|XP_002519496.1| calmodulin binding protein, putative [Ricinus communis] gi|223541359|gb|EEF42910.1| calmodulin binding protein, putative [Ricinus communis]

 Score =  145 bits (365), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 96/124 (77%), Gaps = 7/124 (5%)

Query: 5   EDSIKGLTKLKMLITKLQRGLF--SASR----EDVDGKSGGATVVPKDVKKGHFAVVAEK 58
           E+S+KGL  LK+ + K+QRGL   SAS+    + +D +   A V+P+DV++GHFA +A K
Sbjct: 7   EESVKGLMMLKLFVRKIQRGLLHSSASKAPNLDTIDEQISAAKVLPEDVRQGHFAAIAVK 66

Query: 59  GGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRI 118
           GG+PKRFVLEL YLS+P F+ LLEQAE+EYGFQQ+G+L++PC PEELQ +L  ++R RR+
Sbjct: 67  GGEPKRFVLELDYLSDPAFMKLLEQAEEEYGFQQQGVLSIPCQPEELQAILGDRRR-RRM 125

Query: 119 RTEW 122
            TEW
Sbjct: 126 STEW 129

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069539|ref|XP_002326368.1| SAUR family protein [Populus trichocarpa] gi|222833561|gb|EEE72038.1| SAUR family protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/129 (57%), Positives = 93/129 (72%), Gaps = 8/129 (6%)

Query: 1   MERSEDSIKGLTKLKMLITKLQRGLF-SASREDVDGKSG------GATVVPKDVKKGHFA 53
           M+  E+S+K    LK+ I KL+R L  SASR     ++G       A +VP DVKKGHFA
Sbjct: 1   MKNMEESLKRAMMLKLFIRKLKRVLLLSASRGANVRETGFDEVMEAAKIVPVDVKKGHFA 60

Query: 54  VVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKK 113
           V A KG +PKRFV++L  LSNP+FLSLLEQA++EYGFQQ+G+LAVPC PEELQ +L+ K+
Sbjct: 61  VTAIKGEEPKRFVVKLDCLSNPDFLSLLEQAKEEYGFQQEGVLAVPCRPEELQMILE-KR 119

Query: 114 RHRRIRTEW 122
           R RR  TEW
Sbjct: 120 RRRRASTEW 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140209|ref|XP_002323477.1| SAUR family protein [Populus trichocarpa] gi|222868107|gb|EEF05238.1| SAUR family protein [Populus trichocarpa]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/125 (56%), Positives = 87/125 (69%), Gaps = 8/125 (6%)

Query: 5   EDSIKGLTKLKMLITKLQRGLF-SASR------EDVDGKSGGATVVPKDVKKGHFAVVAE 57
           E+S+     LK+ I KL+R L  SASR         D       +VP DVKKGHFAV A 
Sbjct: 2   EESLTRAMMLKLFIRKLKRVLLLSASRGANTSEVRFDEVMEATKMVPGDVKKGHFAVTAT 61

Query: 58  KGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRR 117
           KG +PKRF++EL YL+NP+FLSLLEQA++EYGFQQ+G+LAVPC PEELQ +L+  +R RR
Sbjct: 62  KGEEPKRFIVELNYLTNPDFLSLLEQAKEEYGFQQEGVLAVPCRPEELQKILE-NRRKRR 120

Query: 118 IRTEW 122
             TEW
Sbjct: 121 ASTEW 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481402|ref|XP_003632616.1| PREDICTED: indole-3-acetic acid-induced protein ARG7-like [Vitis vinifera]

 Score =  114 bits (285), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 62/118 (52%), Positives = 80/118 (67%), Gaps = 8/118 (6%)

Query: 13  KLKMLITKLQR--GLFSASR----EDV--DGKSGGATVVPKDVKKGHFAVVAEKGGKPKR 64
           KL+  I KLQ    L  + R    +DV  D +   AT+VP DVK+GHFAV A  GG+PKR
Sbjct: 2   KLEHFIRKLQLVLSLVPSKRMVVQDDVEYDEELEAATMVPDDVKEGHFAVWAVMGGEPKR 61

Query: 65  FVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRTEW 122
           F+++L YL+NP FL LLEQAE+EYGF+QKG LAVPC PEELQ +L+ ++    +   W
Sbjct: 62  FIVDLCYLTNPAFLRLLEQAEEEYGFEQKGTLAVPCQPEELQKILQPRREPTAMARRW 119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436516|ref|XP_002273603.1| PREDICTED: uncharacterized protein LOC100244862 [Vitis vinifera] gi|297734930|emb|CBI17164.3| unnamed protein product [Vitis vinifera]

 Score =  104 bits (260), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 74/120 (61%), Gaps = 7/120 (5%)

Query: 10  GLTKLKMLITKLQRGLF----SASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRF 65
           G+ KLK+++ KLQ+ L     SA   D       +T VP DVK+GHFAV+A    +PKRF
Sbjct: 14  GIVKLKIVVEKLQKSLLLGRKSACENDEFKDVSDSTYVPADVKEGHFAVIAVDDDEPKRF 73

Query: 66  VLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLK---YKKRHRRIRTEW 122
           V+ L +L++P FL LLEQA +EYGF  +G L +PC P EL+++L     K+R   +   W
Sbjct: 74  VVPLNFLTHPTFLKLLEQAAEEYGFDHEGALTIPCRPSELESILAEQWQKERDSSVGVPW 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388281862|dbj|BAM15889.1| putative auxin-responsive family protein, partial [Pyrus pyrifolia var. culta]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 11/117 (9%)

Query: 9   KGLTKLKMLITKL-QRGL----------FSASREDVDGKSGGATVVPKDVKKGHFAVVAE 57
           +GL  L++LI KL  +GL                D + +S    VVP+DVK GHFAV A 
Sbjct: 18  RGLLMLRLLIGKLVHKGLSILASRGLHGHHHRHNDFNVESEATMVVPQDVKDGHFAVFAV 77

Query: 58  KGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKR 114
           KG + +RFV++L  LSNPEFL LLE+A++EYGF QKG LAVPC P ELQ +L+  +R
Sbjct: 78  KGNEAERFVVKLESLSNPEFLRLLEEAKEEYGFDQKGALAVPCRPRELQKILQSCRR 134

Source: Pyrus pyrifolia var. culta

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541940|ref|XP_003539430.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 8   IKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKP-KRFV 66
           + G+ K K ++ KLQ+ L    R      S  ++ VP+DVK+GHFAV+AE GG+  KRFV
Sbjct: 17  VGGIVKFKFVVEKLQKRLILLGRNKEGCDSSNSSYVPEDVKEGHFAVIAEGGGEEQKRFV 76

Query: 67  LELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHR 116
           L L  L+NP FL LLEQAE+EYGF  +G + +PC P EL+ +L   + H+
Sbjct: 77  LPLSCLTNPTFLKLLEQAEEEYGFDHEGAVTIPCRPCELERILLAHQWHQ 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451219|ref|XP_004143359.1| PREDICTED: uncharacterized protein LOC101223047 [Cucumis sativus]

 Score =  104 bits (259), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 7/117 (5%)

Query: 11  LTKLKMLITKLQRGLF-----SASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRF 65
           L KL+++I  LQ+ L       +  E    +   A  VPKDV++GHF V A  G + KRF
Sbjct: 18  LMKLRLVIALLQKSLSPLLSKESRHESFYEEFEAAATVPKDVEEGHFVVFAVDGDERKRF 77

Query: 66  VLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRTEW 122
           V+ L +LSNPEFL LLE A++EYGFQQKG L VPC PEELQ +++ +++ +    EW
Sbjct: 78  VINLEFLSNPEFLRLLELAKEEYGFQQKGALTVPCRPEELQKIVEERRKQK--NGEW 132

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503722|ref|XP_003520653.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 69/95 (72%), Gaps = 5/95 (5%)

Query: 18  ITKLQRG---LFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSN 74
           + KLQ+    LF  S ED       AT+VP+DV +GHFAV+A KG + +RFV++L YL++
Sbjct: 6   VKKLQKSVSLLFVHSNED--QLEAAATLVPEDVMEGHFAVLAIKGEETRRFVVKLDYLAD 63

Query: 75  PEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVL 109
           P F+ LL QA +EYGF+QKG LAVPC P+ELQNVL
Sbjct: 64  PMFMELLNQAREEYGFKQKGALAVPCRPQELQNVL 98

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570764|ref|XP_003553554.1| PREDICTED: auxin-induced protein 10A5-like [Glycine max]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/96 (50%), Positives = 68/96 (70%)

Query: 14  LKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLS 73
           L+  + +LQ+ L S    + D      T+VP+DV +GHFAV+A KG   +RF+++L YL+
Sbjct: 2   LRSCLKQLQKNLSSFVHSNEDQVLEAVTLVPEDVMEGHFAVLAIKGEDTRRFIVKLDYLT 61

Query: 74  NPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVL 109
           +P F+ LL QA +EYGF+QKG LAVPC P+ELQN+L
Sbjct: 62  DPMFMELLNQAREEYGFKQKGALAVPCRPQELQNIL 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2085104	113	AT3G09870 "AT3G09870" [Arabido	0.803	0.867	0.460	3.1e-19
TAIR|locus:505006276	124	AT2G28085 "AT2G28085" [Arabido	0.885	0.870	0.437	5.3e-17
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.811	0.521	0.346	4.5e-11
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.557	0.561	0.434	5.8e-11
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.606	0.544	0.413	1.2e-10
TAIR|locus:2013074	117	AT1G19830 "AT1G19830" [Arabido	0.696	0.726	0.397	2.5e-10
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.909	0.693	0.330	2.5e-10
TAIR|locus:2116865	106	AT4G34780 "AT4G34780" [Arabido	0.622	0.716	0.410	4.1e-10
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.885	0.701	0.327	6.6e-10
TAIR|locus:2141786	105	AT4G38860 "AT4G38860" [Arabido	0.680	0.790	0.395	6.6e-10

TAIR|locus:2085104 AT3G09870 "AT3G09870" [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 47/102 (46%), Positives = 71/102 (69%)

Query:    11 LTKLKM--LITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLE 68
             + KL++  L T+  + + +    + +G +  A+++P DVK+GH AV+A KG + KRFVLE
Sbjct:     9 MRKLQICCLFTRFSKRVGNYCEFEEEGNA--ASMIPSDVKEGHVAVIAVKGERIKRFVLE 66

Query:    69 LGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLK 110
             L  L+ PEFL LLEQA +E+GFQ +G L +PC PEE+Q +L+
Sbjct:    67 LEELNKPEFLRLLEQAREEFGFQPRGPLTIPCQPEEVQKILQ 108

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:505006276 AT2G28085 "AT2G28085" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 49/112 (43%), Positives = 71/112 (63%)

Query:     1 MERSEDSIKGLTKLKMLITKL-QRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKG 59
             +E  +  + G+ KLK ++ +L Q   FS++++    +  G   VPKDVK+GHFAV+A  G
Sbjct:     9 IESPKKKMGGIVKLKNVVERLVQIKGFSSAKKPCP-EEYGRDCVPKDVKEGHFAVIAVDG 67

Query:    60 -GKP-KRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVL 109
               +P +RFV+ L +L +P F  LLEQAE+EYGF   G L VPC P  L+ +L
Sbjct:    68 YHEPTQRFVVPLMFLEHPMFRKLLEQAEEEYGFYHDGALMVPCRPSHLRMIL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/101 (34%), Positives = 54/101 (53%)

Query:    10 GLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLEL 69
             G   + M+   + + L      D D ++  +   P DV KG+ AV    G + +RF++  
Sbjct:    42 GKQAVAMISPAINKRLLDVKNGDSDEETCQSPEPPHDVPKGNLAVYV--GPELRRFIIPT 99

Query:    70 GYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLK 110
              YLS+  F  LLE+AE+E+GF Q G L +PC  E  + +LK
Sbjct:   100 SYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETFKYLLK 140

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query:    41 TVVPKDVKKGHFAV-VAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVP 99
             +V  KDV KG  A+ V  +G + +RF++ + Y ++P F+ LL++AE EYGF QKG + +P
Sbjct:    18 SVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIP 77

Query:   100 CPPEELQNV 108
             C  EE + V
Sbjct:    78 CHVEEFRYV 86

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 31/75 (41%), Positives = 46/75 (61%)

Query:    45 KDVKKGHFAV-VAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPE 103
             KDV KG  A+ V  K  + +RFV+ + Y ++P F+ LL +AE+EYGF+QKG + +PC  E
Sbjct:    28 KDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVE 87

Query:   104 ELQNVLKYKKRHRRI 118
               + V     R R +
Sbjct:    88 VFRYVQDMINRERSL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2013074 AT1G19830 "AT1G19830" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 37/93 (39%), Positives = 51/93 (54%)

Query:     8 IKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVL 67
             IK + K    + K Q   ++ + E  DG S     +P DV KGHF V    GG   R+VL
Sbjct:    15 IKQILKRCSSLGKKQSSEYNDTHEH-DGDS-----LPLDVPKGHFVVYV--GGNRVRYVL 66

Query:    68 ELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPC 100
              + +L+ PEF  LL+QAE+E+GF     L +PC
Sbjct:    67 PISFLTRPEFQLLLQQAEEEFGFDHNMGLTIPC 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 38/115 (33%), Positives = 60/115 (52%)

Query:     3 RSEDSIKGLTKLKMLITK-LQRGLFSASREDVDGKSG-GATVVPKDVKKGHFAVVAEKGG 60
             +S+D   G  K   +I+  + + L      D D ++   +   P DV KG+ AV    G 
Sbjct:    33 KSDDGELGARKHTAIISPVINKRLLDLKTCDSDEETTCQSPEPPPDVPKGYLAVYV--GP 90

Query:    61 KPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRH 115
             + +RF++   +LS+  F  LLE+AE+EYGF   G L +PC  E  + +LK  + H
Sbjct:    91 ELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETFKYLLKCIENH 145

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2116865 AT4G34780 "AT4G34780" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 32/78 (41%), Positives = 49/78 (62%)

Query:    46 DVKKGHFAV-VAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQ-QKGILAVPCPPE 103
             +V+KGHFAV V E   + KRFV+ + YL++P F +LL +AE E+G   Q+  L +PC  +
Sbjct:    27 NVRKGHFAVYVGEDEMETKRFVVPISYLNHPLFQALLRKAEDEFGTDHQRTYLTIPCAKD 86

Query:   104 ELQNVLKYKKRHRRIRTE 121
                ++    KR++ I TE
Sbjct:    87 VFLDITSRLKRNKFISTE 104

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 37/113 (32%), Positives = 56/113 (49%)

Query:    10 GLTKLKML--ITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVL 67
             GL K   +  I +L R +    R+     S  +  VP DV  GH AV    G   +RFV+
Sbjct:     4 GLGKCSKIRHIVRL-RQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYV--GSSCRRFVV 60

Query:    68 ELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRHRRIRT 120
                YL++P   +LL QAE+E+GF  +G L +PC     +  +++  R    R+
Sbjct:    61 RATYLNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRS 113

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2141786 AT4G38860 "AT4G38860" [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
 Identities = 36/91 (39%), Positives = 54/91 (59%)

Query:    11 LTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELG 70
             LT+  ML   L+R   S  ++    + G    +P DV KGHF V    G K  R+++ + 
Sbjct:     9 LTQTAMLKQILKR-CSSLGKKQCYDEEG----LPLDVPKGHFPVYV--GEKRTRYIVPIS 61

Query:    71 YLSNPEFLSLLEQAEQEYGFQQK-GILAVPC 100
             +L++PEFL LL+QAE+E+GF+   G L +PC
Sbjct:    62 FLTHPEFLILLQQAEEEFGFRHDMGGLTIPC 92

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023240001 SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (258 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	3e-22
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-13
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-08
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-06

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score = 83.5 bits (207), Expect = 3e-22
 Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)

Query: 35  GKSGGATVVPKDVKKGHFAV-VAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK 93
            +   +     DV KGHFAV V E+    +RFV+ + YL++P F  LL++AE+E+GF Q 
Sbjct: 23  SRGSSSKSSSADVPKGHFAVYVGEET---RRFVVPISYLNHPLFQELLDRAEEEFGFDQD 79

Query: 94  GILAVPCPPEELQNVLK 110
           G L +PC     +++L 
Sbjct: 80  GGLTIPCDVVVFEHLLW 96

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)

Query: 44  PKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQKGILAVPC 100
           P DV KGHF V    G    R+++ + +L++PEF SLL+QAE+E+GF     L +PC
Sbjct: 37  PLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPC 91

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 49.0 bits (116), Expect = 1e-08
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 27  SASREDVDGKSGGATVVPKD--VKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQA 84
           S S  + +G S  ++       V KGH AV   +  + KRFV+ + YL++P F   L +A
Sbjct: 17  SQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRA 76

Query: 85  EQEYGFQQK-GILAVPCPPEELQNVLKYKKRH 115
           E+E GF    G L +PC  E   +++   + H
Sbjct: 77  EEECGFHHSMGGLTIPCREESFLHLITSHQLH 108

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 47  VKKGHFAV-VAEK-GGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQK-GILAVPCPPE 103
           V KGH AV V E+   + KRFV+ + +L++P F   L +AE+E+GF    G L +PC  E
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	91.81
PRK02899	197	adaptor protein; Provisional	84.9

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=3.5e-38  Score=225.44  Aligned_cols=97  Identities=30%  Similarity=0.554  Sum_probs=85.2

Q ss_pred             hhhhchHHHHHHHHHhhccccCCCCCCCCCCCCCCCcCCCCCCCCeEEEEeecCCceeeEEEeecccccHHHHHHHHHHH
Q 040995            6 DSIKGLTKLKMLITKLQRGLFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAE   85 (122)
Q Consensus         6 ~ki~~~~kLk~~~kKwq~~~~~~~~~~~~~~~~~~~~~~~~v~kG~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~ae   85 (122)
                      +||+++++||+|+|||.+.+..   ++..     ....|.++|+|||||||  |++++||+||++|||||+|++||++||
T Consensus         7 ~ki~~~~~~kq~l~r~~s~~~~---~~~~-----~~~~~~~vpkG~~aVyV--G~~~~RfvVp~~~L~hP~F~~LL~~ae   76 (104)
T PLN03090          7 NKLTQTAMLKQILKRCSSLGKK---QGYD-----EDGLPLDVPKGHFPVYV--GENRSRYIVPISFLTHPEFQSLLQQAE   76 (104)
T ss_pred             cchhHHHHHHHHHHHHHHhccc---CCcc-----cccCCCCCCCCcEEEEE--CCCCEEEEEEHHHcCCHHHHHHHHHHH
Confidence            6899999999999999877221   1111     12367789999999999  778999999999999999999999999


Q ss_pred             HhcCCCCCCceEecCCHHHHHHHHHHH
Q 040995           86 QEYGFQQKGILAVPCPPEELQNVLKYK  112 (122)
Q Consensus        86 eEfG~~~~G~l~iPC~~~~Fe~vl~~~  112 (122)
                      |||||+|+|+|+|||+++.|+++++++
T Consensus        77 eEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         77 EEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             HHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999999997

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.7e-35  Score=207.44  Aligned_cols=94  Identities=37%  Similarity=0.572  Sum_probs=75.9

Q ss_pred             HHHHHHHHhhcc-ccCCCCCCCCCCCCCCCcCCCCCCCCeEEEEeecCCceeeEEEeecccccHHHHHHHHHHHHhcCCC
Q 040995           13 KLKMLITKLQRG-LFSASREDVDGKSGGATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQ   91 (122)
Q Consensus        13 kLk~~~kKwq~~-~~~~~~~~~~~~~~~~~~~~~~v~kG~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~   91 (122)
                      +....++||++. ...++..+.+.     +....++|+|||||||  |++++||+||++|||||+|++||++|||||||+
T Consensus         6 k~~~~~~k~~~~~~~~~~~~~~~~-----~~~~~~vp~G~~~VyV--G~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~   78 (100)
T PF02519_consen    6 KSLASAKKWQSRARSKSSSSSSSR-----SSSESDVPKGHFAVYV--GEERRRFVVPVSYLNHPLFQELLEQAEEEFGFD   78 (100)
T ss_pred             HHHHHHHhhhhhhhhccccccccc-----ccccCCCCCCeEEEEe--CccceEEEechHHcCchhHHHHHHHHhhhcCcC
Confidence            334445677766 33333322211     1223789999999999  779999999999999999999999999999999


Q ss_pred             CCCceEecCCHHHHHHHHHHHH
Q 040995           92 QKGILAVPCPPEELQNVLKYKK  113 (122)
Q Consensus        92 ~~G~l~iPC~~~~Fe~vl~~~~  113 (122)
                      ++|+|+|||+++.|+++|++++
T Consensus        79 ~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   79 QDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCcEEeeCCHHHHHHHHHHhC
Confidence            9999999999999999999874

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1e-33  Score=202.41  Aligned_cols=69  Identities=35%  Similarity=0.669  Sum_probs=63.2

Q ss_pred             CCCCCCCCeEEEEeecCC--ceeeEEEeecccccHHHHHHHHHHHHhcCCCC-CCceEecCCHHHHHHHHHH
Q 040995           43 VPKDVKKGHFAVVAEKGG--KPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEELQNVLKY  111 (122)
Q Consensus        43 ~~~~v~kG~~~VyV~~G~--e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~~-~G~l~iPC~~~~Fe~vl~~  111 (122)
                      .+.+|||||||||||+++  +++|||||+.|||||+|++||++|||||||+| +|+|+|||+++.|+++|..
T Consensus        31 ~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         31 SSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             ccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            556899999999997642  57999999999999999999999999999998 6999999999999999864

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.2e-33  Score=200.78  Aligned_cols=71  Identities=35%  Similarity=0.620  Sum_probs=65.7

Q ss_pred             cCCCCCCCCeEEEEeecCCceeeEEEeecccccHHHHHHHHHHHHhcCCCC-CCceEecCCHHHHHHHHHHH
Q 040995           42 VVPKDVKKGHFAVVAEKGGKPKRFVLELGYLSNPEFLSLLEQAEQEYGFQQ-KGILAVPCPPEELQNVLKYK  112 (122)
Q Consensus        42 ~~~~~v~kG~~~VyV~~G~e~~RfvVpv~yL~~P~F~~LL~~aeeEfG~~~-~G~l~iPC~~~~Fe~vl~~~  112 (122)
                      +.+.++|+||||||||+++|++||+||++|||||+|++||++|||||||++ +|+|+|||+++.|+++|...
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            456789999999999776689999999999999999999999999999997 69999999999999999864

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=91.81  E-value=0.21  Score=33.45  Aligned_cols=53  Identities=17%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             eeEEEeecccc-cH--HHHHHHHHHHHhcCCCCCCceEecCCHHHHHHHHHHHHhC
Q 040995           63 KRFVLELGYLS-NP--EFLSLLEQAEQEYGFQQKGILAVPCPPEELQNVLKYKKRH  115 (122)
Q Consensus        63 ~RfvVpv~yL~-~P--~F~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~vl~~~~~~  115 (122)
                      ++|.++.+-|. +|  .|..|++.......-+.+|.+-|-+++..|++||..++.+
T Consensus         8 ~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    8 TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            89999999888 44  7888888652222224579999999999999999999983

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=84.90  E-value=0.86  Score=35.65  Aligned_cols=25  Identities=32%  Similarity=0.655  Sum_probs=21.8

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCceEe
Q 040995           74 NPEFLSLLEQAEQEYGFQQKGILAV   98 (122)
Q Consensus        74 ~P~F~~LL~~aeeEfG~~~~G~l~i   98 (122)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3578888999999999999999975

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 9e-07
 Identities = 24/113 (21%), Positives = 39/113 (34%), Gaps = 15/113 (13%)

Query: 17  LITKLQRGLFSASRED---VDGKSG-GATVVPKDVKKGHFAVVAEKGGKPKRFVLELGYL 72
              KL++ L          +DG  G G T V  DV   +  V  +   K   F L L   
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKI--FWLNLKNC 192

Query: 73  SNPEFL-----SLLEQAEQEYGFQQKGILAVPCPPEELQNVLKY---KKRHRR 117
           ++PE +      LL Q +  +  +      +      +Q  L+     K +  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	80.76

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=80.76  E-value=5.2  Score=25.60  Aligned_cols=62  Identities=16%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             EEEEeecCCceeeEEEeeccc--ccHHHHHHHHHHHHhcCCCCCCceEec-CCHHHHHHHHHHHHhCcc
Q 040995           52 FAVVAEKGGKPKRFVLELGYL--SNPEFLSLLEQAEQEYGFQQKGILAVP-CPPEELQNVLKYKKRHRR  117 (122)
Q Consensus        52 ~~VyV~~G~e~~RfvVpv~yL--~~P~F~~LL~~aeeEfG~~~~G~l~iP-C~~~~Fe~vl~~~~~~~~  117 (122)
                      +.+.|++|++.++|-+.-..|  ..|.|+.++...-.|-   . ..|.+| .+++.|+.+|..+-.++.
T Consensus        11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~---~-~~i~l~~~~~~~f~~~l~~iYt~~~   75 (109)
T 2vkp_A           11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEV---K-SEIHIPDVEPAAFLILLKYMYSDEI   75 (109)
T ss_dssp             EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC---------C-CEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred             EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccC---C-CeEEeCCCCHHHHHHHHHHHcCCCc
Confidence            345565555568888888887  6899999997644332   2 678897 799999999998887764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00