Citrus Sinensis ID: 041006
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SH69 | 487 | 6-phosphogluconate dehydr | yes | no | 0.930 | 0.636 | 0.721 | 1e-144 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.933 | 0.638 | 0.716 | 1e-144 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.951 | 0.590 | 0.701 | 1e-141 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.921 | 0.635 | 0.638 | 1e-124 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | yes | no | 0.930 | 0.610 | 0.637 | 1e-123 | |
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | no | no | 0.927 | 0.635 | 0.618 | 1e-119 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | no | no | 0.909 | 0.631 | 0.627 | 1e-118 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.894 | 0.632 | 0.488 | 2e-84 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.924 | 0.656 | 0.455 | 6e-81 | |
| P37756 | 468 | 6-phosphogluconate dehydr | yes | no | 0.888 | 0.632 | 0.478 | 1e-76 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function desciption |
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Score = 511 bits (1317), Expect = e-144, Method: Compositional matrix adjust.
Identities = 254/352 (72%), Positives = 285/352 (80%), Gaps = 42/352 (11%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG 74
S G AR+GPSLMPGGSF+AY+NI+ IL+KVAAQV+DGPCVTYIGEGGS NFVKMVHNG
Sbjct: 134 SGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNG 193
Query: 75 IEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEG 134
IEYGDMQLISEAY +LK+VGG+SN ELAEIF EWN GELESF+V+IT+DIF+VKDE+G+G
Sbjct: 194 IEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEITSDIFRVKDEFGDG 253
Query: 135 ELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAG 194
ELVDKILDKTGMKGTGKWT+QQAAEL +AA TIA SLDCRYLSGLK+ERE AAKVL+EAG
Sbjct: 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENAAKVLREAG 313
Query: 195 LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIW 254
LK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK WNLNFGELARIW
Sbjct: 314 LKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEKSWNLNFGELARIW 373
Query: 255 KDG----------INKAYQRNPNLASLVMDPEFAREMVQ--------------------- 283
K G I KAYQRNP+LASLV+DPEFA+EMVQ
Sbjct: 374 KGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRVVGLAVSAGISTPG 433
Query: 284 -----------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARQ 324
RRARLP NLVQAQRDLFGAHTYER DRPG++HTEWTKLAR+
Sbjct: 434 MCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARK 485
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Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
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| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
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| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
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| >sp|P37756|6PGD_SHIFL 6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella flexneri GN=gnd PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| 255553267 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.957 | 0.644 | 0.761 | 1e-153 | |
| 255537671 | 495 | 6-phosphogluconate dehydrogenase, putati | 0.957 | 0.644 | 0.756 | 1e-151 | |
| 356513305 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.957 | 0.644 | 0.748 | 1e-149 | |
| 356528974 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.987 | 0.664 | 0.718 | 1e-149 | |
| 449464086 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.957 | 0.644 | 0.731 | 1e-148 | |
| 449522891 | 495 | PREDICTED: 6-phosphogluconate dehydrogen | 0.957 | 0.644 | 0.731 | 1e-148 | |
| 222875454 | 495 | 6-phosphogluconate dehydrogenase [Cucumi | 0.957 | 0.644 | 0.728 | 1e-147 | |
| 225426063 | 494 | PREDICTED: 6-phosphogluconate dehydrogen | 0.954 | 0.643 | 0.733 | 1e-146 | |
| 147798262 | 494 | hypothetical protein VITISV_008240 [Viti | 0.954 | 0.643 | 0.733 | 1e-146 | |
| 224053813 | 494 | predicted protein [Populus trichocarpa] | 0.957 | 0.645 | 0.720 | 1e-146 |
| >gi|255553267|ref|XP_002517676.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223543308|gb|EEF44840.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/361 (76%), Positives = 297/361 (82%), Gaps = 42/361 (11%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG 74
S G AR GPSLMPGGSFEAYNNI+ ILQKVAAQV+DGPCVTYIGEGGS NFVKMVHNG
Sbjct: 135 SGGEEGARFGPSLMPGGSFEAYNNIKDILQKVAAQVEDGPCVTYIGEGGSGNFVKMVHNG 194
Query: 75 IEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEG 134
IEYGDMQLISEAY +LK+VGG+SNAELAEIF EWNKGELESF+++IT+DIF+VKDE+G+G
Sbjct: 195 IEYGDMQLISEAYDVLKNVGGLSNAELAEIFTEWNKGELESFLIEITSDIFRVKDEHGDG 254
Query: 135 ELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAG 194
ELVDKILDKTGMKGTGKWT+QQAAEL +AA TIA SLDCRYLSGLKEERE AA+VLKEAG
Sbjct: 255 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEERESAAQVLKEAG 314
Query: 195 LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIW 254
LK+EV+ V +DKKRLIDDVRQALYASKICSYAQGMNLLR+KS EKGWNLNFGELARIW
Sbjct: 315 LKEEVEAVKSGIDKKRLIDDVRQALYASKICSYAQGMNLLRAKSVEKGWNLNFGELARIW 374
Query: 255 KDG----------INKAYQRNPNLASLVMDPEFAREMVQ--------------------- 283
K G I KAYQRNPNLASLV+DPEFAREMVQ
Sbjct: 375 KGGCIIRAVFLDRIKKAYQRNPNLASLVVDPEFAREMVQRQAAWRRVVGLAISAGISTPG 434
Query: 284 -----------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARQTGAGVGAF 332
RRARLP NLVQAQRDLFGAHTYERIDRPGSFHTEWTKLAR++ AGVGAF
Sbjct: 435 MCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARKSNAGVGAF 494
Query: 333 N 333
N
Sbjct: 495 N 495
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537671|ref|XP_002509902.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223549801|gb|EEF51289.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|356513305|ref|XP_003525354.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356528974|ref|XP_003533072.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449464086|ref|XP_004149760.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449522891|ref|XP_004168459.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|222875454|gb|ACM68927.1| 6-phosphogluconate dehydrogenase [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|225426063|ref|XP_002275970.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147798262|emb|CAN63456.1| hypothetical protein VITISV_008240 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224053813|ref|XP_002297992.1| predicted protein [Populus trichocarpa] gi|222845250|gb|EEE82797.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.843 | 0.577 | 0.721 | 4.9e-127 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.816 | 0.558 | 0.734 | 1.7e-126 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.843 | 0.523 | 0.714 | 7.2e-124 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.810 | 0.531 | 0.630 | 8.1e-108 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.798 | 0.554 | 0.636 | 3.5e-105 | |
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.810 | 0.555 | 0.625 | 2.2e-89 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.804 | 0.571 | 0.475 | 1.6e-75 | |
| UNIPROTKB|P37756 | 468 | gnd "6-phosphogluconate dehydr | 0.765 | 0.544 | 0.489 | 1.2e-71 | |
| UNIPROTKB|P00349 | 483 | PGD "6-phosphogluconate dehydr | 0.807 | 0.556 | 0.451 | 1.6e-71 | |
| MGI|MGI:97553 | 483 | Pgd "phosphogluconate dehydrog | 0.792 | 0.546 | 0.468 | 4.2e-71 |
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1069 (381.4 bits), Expect = 4.9e-127, Sum P(2) = 4.9e-127
Identities = 212/294 (72%), Positives = 240/294 (81%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG 74
S G AR+GPSLMPGGSF+AY+NI+ IL+KVAAQV+DGPCVTYIGEGGS NFVKMVHNG
Sbjct: 134 SGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPCVTYIGEGGSGNFVKMVHNG 193
Query: 75 IEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEG 134
IEYGDMQLISEAY +LK+VGG+SN ELAEIF EWN GELESF+V+IT+DIF+VKDE+G+G
Sbjct: 194 IEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEITSDIFRVKDEFGDG 253
Query: 135 ELVDKILDKTGMKGTGKWXXXXXXXXXXXXXXXXGSLDCRYLSGLKEEREEAAKVLKEAG 194
ELVDKILDKTGMKGTGKW SLDCRYLSGLK+ERE AAKVL+EAG
Sbjct: 254 ELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENAAKVLREAG 313
Query: 195 LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIW 254
LK+E+ + +DKKRL+DDVRQALYASKICSYAQGMNLLR+KS EK WNLNFGELARIW
Sbjct: 314 LKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEKSWNLNFGELARIW 373
Query: 255 KDG----------INKAYQRNPNLASLVMDPEFAREMVQRRA---RLPGNLVQA 295
K G I KAYQRNP+LASLV+DPEFA+EMVQR+A R+ G V A
Sbjct: 374 KGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRVVGLAVSA 427
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| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
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| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P37756 gnd "6-phosphogluconate dehydrogenase, decarboxylating" [Shigella flexneri (taxid:623)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P00349 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Ovis aries (taxid:9940)] | Back alignment and assigned GO terms |
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| MGI|MGI:97553 Pgd "phosphogluconate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7215 | 0.9309 | 0.6365 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.6376 | 0.9309 | 0.6102 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.766 |
| 4th Layer | 1.1.1.44 | 0.824 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | grail3.0008041101 | phosphogluconate dehydrogenase (decarboxylating) (EC-1.1.1.44) (495 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | estExt_Genewise1_v1.C_LG_XIX0814 | • | • | • | 0.920 | ||||||
 | estExt_fgenesh4_pg.C_LG_I2289 | • | • | • | 0.916 | ||||||
 | fgenesh4_pg.C_LG_XII000285 | • | • | • | 0.914 | ||||||
 | eugene3.00150082 | • | • | • | 0.913 | ||||||
 | grail3.0006058601 | • | • | • | 0.909 | ||||||
 | estExt_Genewise1_v1.C_1290095 | • | • | 0.908 | |||||||
 | gw1.XIII.1456.1 | • | • | 0.901 | |||||||
 | gw1.70.218.1 | • | • | 0.900 | |||||||
 | grail3.0176001401 | • | 0.899 | ||||||||
 | fgenesh4_pg.C_LG_XI001338 | • | 0.899 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 333 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 1e-164 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 1e-155 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 1e-142 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 1e-137 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 1e-137 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 3e-26 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 3e-22 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 8e-22 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 8e-19 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 3e-05 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 0.001 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
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Score = 590 bits (1522), Expect = 0.0
Identities = 249/361 (68%), Positives = 276/361 (76%), Gaps = 43/361 (11%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNG 74
S G AR+GPSLMPGGSFEAY NI+ IL+KVAAQVDDGPCVTYIG GG+ NFVKMVHNG
Sbjct: 134 SGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNG 193
Query: 75 IEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEG 134
IEYGDMQLISEAY +LK VGG+SN ELAE+F EWNKGELESF+++ITADIF VKD+ G+G
Sbjct: 194 IEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDG 253
Query: 135 ELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAG 194
LVDKILDKTGMKGTGKWT+QQAAEL +AA TIA SLD RYLSGLKEER AAKV KEAG
Sbjct: 254 YLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAG 313
Query: 195 LKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARIW 254
L+D + VDKK+LIDDVRQALYASKICSYAQGMNL+R+KS EKGWNLN GELARIW
Sbjct: 314 LEDILSADSG-VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIW 372
Query: 255 KDG----------INKAYQRNPNLASLVMDPEFAREMVQ--------------------- 283
K G I KAY RNP+LASL++DPEFA+EMV+
Sbjct: 373 KGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAINAGISTPG 432
Query: 284 -----------RRARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKLARQTGAGVGAF 332
RRARLP NLVQAQRD FGAHTYER+DRPGSFHTEWTKLAR++ G
Sbjct: 433 MSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLARKSKIITGRT 492
Query: 333 N 333
Sbjct: 493 A 493
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Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
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| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
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| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
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| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
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| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
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| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
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| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
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| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.96 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.94 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.93 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.93 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.92 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.92 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.91 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.91 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.91 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.89 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.88 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.85 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.85 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.85 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.84 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.84 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.4 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.39 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.37 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.23 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.18 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.78 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.77 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 98.72 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.68 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.65 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.53 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.5 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.34 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.05 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.03 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.86 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.55 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 97.51 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 97.29 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.25 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 97.24 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 97.16 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 96.9 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.8 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.49 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 96.2 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.11 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 95.7 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 94.43 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 93.84 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 93.26 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 93.05 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 91.7 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.51 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 85.47 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.95 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 83.9 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.79 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-101 Score=732.37 Aligned_cols=312 Identities=56% Similarity=0.910 Sum_probs=301.4
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccCCCCCceEEeCCCChhhHHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQL 82 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~a 82 (333)
.++|+.||+++||||++||++||||||||++++|+.|+|+|++|++|++|+|||.|+|+.|+|||||||||+|+|+.||.
T Consensus 117 ~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQl 196 (473)
T COG0362 117 SEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQL 196 (473)
T ss_pred HhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcCC
Q 041006 83 ISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLI 162 (333)
Q Consensus 83 ~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~Gv 162 (333)
++|+|.+++..+||+.++|++||+.||.|.+.|||.+|+.++|+.+|+....+++|.|+|.+.||||++|++..|.++||
T Consensus 197 IaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGv 276 (473)
T COG0362 197 IAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGV 276 (473)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCC
Confidence 99999999988999999999999999999999999999999999998655569999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCC
Q 041006 163 AALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242 (333)
Q Consensus 163 plP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~~ 242 (333)
|+|.|.+|+++||+|++|++|..++++|.+|.. ....|++.|++++|+|||+|||+||||||++++++|++++
T Consensus 277 P~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-------~~~~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~g 349 (473)
T COG0362 277 PLTLITEAVFARYLSSLKDERVAASKVLAGPKL-------GEPGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYG 349 (473)
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999987754 2367999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh----------------------------
Q 041006 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR---------------------------- 284 (333)
Q Consensus 243 w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~---------------------------- 284 (333)
|++|+++||+|||+| |++||++||++.|||++|+|++.++++
T Consensus 350 W~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~pyF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~ 429 (473)
T COG0362 350 WDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYY 429 (473)
T ss_pred CCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 999999999999999 899999999999999999999999988
Q ss_pred ----ccCcchhHHHHHhhhhcCccccccCCCCcccccccCC
Q 041006 285 ----RARLPGNLVQAQRDLFGAHTYERIDRPGSFHTEWTKL 321 (333)
Q Consensus 285 ----~~~lp~~liqaqRd~FGaH~~~r~d~~~~~h~~w~~~ 321 (333)
+++||+|||||||||||||||+|+|++|.||++|++.
T Consensus 430 Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~ 470 (473)
T COG0362 430 DSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGG 470 (473)
T ss_pred HHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCC
Confidence 9999999999999999999999999999999999864
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 333 | ||||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 2e-79 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 2e-79 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-74 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 9e-74 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 2e-73 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 2e-73 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 2e-73 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 2e-73 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 2e-73 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 6e-71 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 6e-71 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-64 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 5e-30 |
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 473 bits (1219), Expect = e-167
Identities = 159/358 (44%), Positives = 210/358 (58%), Gaps = 51/358 (14%)
Query: 15 SPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQVDDG-PCVTYIGEGGSSNFVKMVHN 73
S G AR+GPSLMPGG+ EA+ +I+ I Q +AA+V G PC ++G+ G+ +FVKMVHN
Sbjct: 128 SGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHFVKMVHN 187
Query: 74 GIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGE 133
GIEYGDMQLI EAY+L+K V G+ + E+A+ F+EWNK EL+SF+++ITA I K +D G+
Sbjct: 188 GIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGK 247
Query: 134 GELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEA 193
L+ KI D G KGTGKWT A E + I ++ R LS LK+ER +A+K LK
Sbjct: 248 -HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGP 306
Query: 194 GLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKGWNLNFGELARI 253
QN+ DKK ++D+R+ALYASKI SYAQG LLR + E GW LN+G +A +
Sbjct: 307 ------QNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALM 360
Query: 254 WKDG----------INKAYQRNPNLASLVMDPEFA----------REMVQ---------- 283
W+ G I A+ RNP L +L++D F R +
Sbjct: 361 WRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQAGIPMP 420
Query: 284 ------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWTKLARQTGAG 328
R A LP NL+QAQRD FGAHTYE + +PG F HT WT +
Sbjct: 421 CFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGSVSSS 478
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.96 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.95 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.93 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.93 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.92 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.92 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.9 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.86 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.85 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.84 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.83 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.83 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.82 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.82 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.77 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.76 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.65 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.65 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.63 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.61 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.6 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.56 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.56 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.55 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.54 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.23 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.83 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.81 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.71 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.69 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.69 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.48 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.37 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 98.27 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.25 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.17 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.12 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.11 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 98.09 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.97 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 97.95 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.79 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 97.74 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 97.68 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.46 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 96.56 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.31 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 97.21 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.15 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 97.05 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 96.94 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 96.64 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 96.59 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 96.36 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 96.34 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 96.25 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 95.9 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 95.86 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.82 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.72 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 95.55 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 94.86 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 94.84 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 94.75 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 94.36 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 94.11 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.85 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 93.19 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 92.83 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 92.82 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 91.79 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 91.49 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 90.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 86.07 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.79 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 84.77 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 84.72 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 80.79 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 80.59 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-84 Score=649.87 Aligned_cols=318 Identities=47% Similarity=0.792 Sum_probs=293.7
Q ss_pred ccCCccEEecccCCCHHHHhcCCeecccCCHHHHHHHHHHHHHHhccC-CCCCceEEeCCCChhhHHHHHHHHHHHHHHH
Q 041006 3 PVRRVCLISAWGSPGARKARHGPSLMPGGSFEAYNNIQGILQKVAAQV-DDGPCVTYIGEGGSSNFVKMVHNGIEYGDMQ 81 (333)
Q Consensus 3 ~~~G~~~ldapVSGg~~gA~~G~sim~GG~~~a~~~v~pvL~~i~~~~-~~~p~v~~~G~~GaG~~vKlv~N~l~~a~m~ 81 (333)
+++|++|+|+|||||+.+|++|++||+||+++++++++|+|+++++++ ++.||+.|+|+.|+||++||+||++++++|+
T Consensus 118 ~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~ 197 (484)
T 4gwg_A 118 KAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQ 197 (484)
T ss_dssp HHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHH
T ss_pred HhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHHHhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHHhhcccCchHHHHHHHHHcC
Q 041006 82 LISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELL 161 (333)
Q Consensus 82 a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d~~~~k~~~~~~v~~A~~~G 161 (333)
+++|++.|+++..|+|++++.++|+.|+.|.+.|||.+++.+++..+|+ .+.++++.+.|.+.||++++|++++|.++|
T Consensus 198 ~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~l~~~D~-~g~~~ld~i~d~~~~kgtG~wt~~~A~~~g 276 (484)
T 4gwg_A 198 LICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKFQDT-DGKHLLPKIRDSAGQKGTGKWTAISALEYG 276 (484)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCCCCCSSCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhcCCc-cCCccHHHHhccccCcchHHHHHHHHHHcC
Confidence 9999999999449999999999999999999999999999999987774 466899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHHHHHhHHHHHHHHHhccCCC
Q 041006 162 IAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEK 241 (333)
Q Consensus 162 vplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~~i~syaQG~~ll~~as~~~ 241 (333)
||+|++++|+++|++|++|++|..++++|.+|... .+..|+++|++++|+|+|||||+||+|||++|+++|++|
T Consensus 277 vp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~------~~~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~ 350 (484)
T 4gwg_A 277 VPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF------QFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEF 350 (484)
T ss_dssp CCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998766421 344688999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh---------------------------
Q 041006 242 GWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR--------------------------- 284 (333)
Q Consensus 242 ~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~--------------------------- 284 (333)
+|++|+++|++|||+| |++||++||+|+|||++|+|.+.++++
T Consensus 351 ~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y 430 (484)
T 4gwg_A 351 GWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSF 430 (484)
T ss_dssp TCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999 899999999999999999999999998
Q ss_pred -----ccCcchhHHHHHhhhhcCccccccCCCCc-ccccccCCCCccCC
Q 041006 285 -----RARLPGNLVQAQRDLFGAHTYERIDRPGS-FHTEWTKLARQTGA 327 (333)
Q Consensus 285 -----~~~lp~~liqaqRd~FGaH~~~r~d~~~~-~h~~w~~~~~~~~~ 327 (333)
+++||+|||||||||||+|||+|+|+||. ||++|++.+++..+
T Consensus 431 ~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~~~~~~~ 479 (484)
T 4gwg_A 431 YDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGGTVSS 479 (484)
T ss_dssp HHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC--------
T ss_pred HHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCCCCCccc
Confidence 89999999999999999999999999995 89999975555444
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 333 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-95 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 5e-87 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 4e-07 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 1e-06 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 283 bits (725), Expect = 1e-95
Identities = 132/300 (44%), Positives = 172/300 (57%), Gaps = 50/300 (16%)
Query: 63 GSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITA 122
G+ +FVKMVHNGIEYGDMQLI EAY+L+K V G+ + E+A+ F+EWNK EL+SF+++ITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 123 DIFKVKDEYGEGELVDKILDKTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEE 182
I K +D G+ L+ KI D G KGTGKWT A E + I ++ R LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 183 REEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYASKICSYAQGMNLLRSKSNEKG 242
R +A+K QN+ DKK ++D+R+ALYASKI SYAQG LLR + E G
Sbjct: 120 RIQASK------KLKGPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFG 173
Query: 243 WNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQ--------- 283
W LN+G +A +W+ G I A+ RNP L +L++D F +
Sbjct: 174 WTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233
Query: 284 -----------------------RRARLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWT 319
R A LP NL+QAQRD FGAHTYE + +PG F HT WT
Sbjct: 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWT 293
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.87 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.85 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.46 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.43 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.4 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.36 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.23 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.22 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.18 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.12 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 97.02 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 96.79 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.05 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 82.71 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=1.5e-70 Score=515.25 Aligned_cols=253 Identities=51% Similarity=0.841 Sum_probs=236.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCCCCchhhHHHHH
Q 041006 63 GSSNFVKMVHNGIEYGDMQLISEAYYLLKHVGGVSNAELAEIFDEWNKGELESFMVQITADIFKVKDEYGEGELVDKILD 142 (333)
Q Consensus 63 GaG~~vKlv~N~l~~a~m~a~AEg~~Ll~~~~Gld~~~ia~I~~~w~~G~i~S~L~~i~~~il~~~d~~~~~~lvd~~~d 142 (333)
|+|||||||||+|||++||++||+|.++++..|+++++|++||+.|+.|.+.|||++|+.++++.+|. ...+++|.+.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 89999999999999999999999999999768999999999999999999999999999999987763 45578999999
Q ss_pred hhcccCchHHHHHHHHHcCCChhHHHHHHHHHHHhhhhhhhhHHHHhhcccCCcccccccccccchhhHHHHHHHHHHHH
Q 041006 143 KTGMKGTGKWTIQQAAELLIAALTIAGSLDCRYLSGLKEEREEAAKVLKEAGLKDEVQNVGVHVDKKRLIDDVRQALYAS 222 (333)
Q Consensus 143 ~~~~k~~~~~~v~~A~~~GvplP~~~aAl~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrda~~~~ 222 (333)
.+.+|||++|++++|.++|||+|++++|+.+|++|+.+++|..++..++++... ....++..|++++|+|+|||
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~------~~~~~~~~~i~~l~~al~~~ 153 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI------PFEGDKKSFLEDIRKALYAS 153 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC------CCCSCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC------CCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997654331 33457889999999999999
Q ss_pred HHHhHHHHHHHHHhccCCCCCCCChHHHHHHhhhc----------chhhhccCCCCCCCcCcHHHHHHHHHh--------
Q 041006 223 KICSYAQGMNLLRSKSNEKGWNLNFGELARIWKDG----------INKAYQRNPNLASLVMDPEFAREMVQR-------- 284 (333)
Q Consensus 223 ~i~syaQG~~ll~~as~~~~w~~~~~~ia~iWr~G----------i~~a~~~~~~l~~ll~~~~~~~~~~~~-------- 284 (333)
+|+||+|||++|++++++++|++|+.+|++|||+| |.++|+++|++.||+++|+|.+.+++.
T Consensus 154 ~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v 233 (297)
T d2pgda1 154 KIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAI 233 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHH
Confidence 99999999999999999999999999999999999 889999999999999999999999887
Q ss_pred ------------------------ccCcchhHHHHHhhhhcCccccccCCCCcc-cccccCCC
Q 041006 285 ------------------------RARLPGNLVQAQRDLFGAHTYERIDRPGSF-HTEWTKLA 322 (333)
Q Consensus 285 ------------------------~~~lp~~liqaqRd~FGaH~~~r~d~~~~~-h~~w~~~~ 322 (333)
++++|+|||||||||||+|||+|+|+||.| |++|+..+
T Consensus 234 ~~ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 234 STGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHHHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 999999999999999999999999999985 99998643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
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| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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