Citrus Sinensis ID: 041011

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
MNEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
cccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEcccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHcccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEccEEEcccccHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEEEEEcccccccEEEEEEcccccccccccEEEEEccccccccccccccccc
cccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccEEEcccccccccHHHHHHHHccEccccccccEEccccccccccccEEcccccccccccEccccEcHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHccccccccEcccHHHHHHHHHHHccEcEccccccccccccccccccccEcccEEEEcccccHHHHHHHHccccEEEEEccccHHHHcccccEEcccccccccEEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEcccccccHHHcccccEc
MNEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKvnnnnnsneginrtyqlgtnqfsdlTNAEFRasyagnsmaitsqhssfkyqnltqvptsmdwrekGAVTSIKNQGGCAACWAFSAVAAVEGITQISsgnlirlseqqlldcssngnsgcvagksdIAFKYIIKNqgiateadypyhqvqgscgrEHAAAAKissyevlpsgdEQALLKAVsmqpvsiniegtgqdfknykggifngvcgtqlDHAVTIIgfgttedgtKYWLIKNswgdtwgeagymriqrdeglcgigtqaaypit
mneaasisiaekhekwmaeHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFgttedgtkyWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
MNEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVnnnnnsnEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGcaacwafsavaavEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
********************************RFKIFKQNLEY********************************FRASYA************FKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPS**EQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAA****
*****SI*IAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASY*******************TQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
MNEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
*****SISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPIT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query313 2.2.26 [Sep-21-2011]
O65493355 Xylem cysteine proteinase no no 0.942 0.830 0.479 4e-84
P43297 462 Cysteine proteinase RD21a no no 0.958 0.649 0.475 5e-82
O65039360 Vignain OS=Ricinus commun N/A no 0.932 0.811 0.466 1e-81
Q9FGR9361 KDEL-tailed cysteine endo no no 0.948 0.822 0.449 3e-79
P43156360 Thiol protease SEN102 OS= N/A no 0.961 0.836 0.445 4e-79
P12412362 Vignain OS=Vigna mungo PE N/A no 0.948 0.820 0.455 1e-78
P25803362 Vignain OS=Phaseolus vulg N/A no 0.961 0.831 0.440 1e-78
P25777 466 Oryzain beta chain OS=Ory no no 0.939 0.630 0.467 3e-78
Q9LM66356 Xylem cysteine proteinase no no 0.942 0.828 0.429 4e-78
P25251328 Cysteine proteinase COT44 N/A no 0.932 0.890 0.455 2e-77
>sp|O65493|XCP1_ARATH Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  311 bits (797), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 150/313 (47%), Positives = 213/313 (68%), Gaps = 18/313 (5%)

Query: 9   IAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQF 68
           + E  E WM+EH ++YK   EK  RF++F++NL +ID+ NN  NS       Y LG N+F
Sbjct: 47  LLELFESWMSEHSKAYKSVEEKVHRFEVFRENLMHIDQRNNEINS-------YWLGLNEF 99

Query: 69  SDLTNAEFRASYAGNSMAITSQH----SSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCA 124
           +DLT+ EF+  Y G +    S+     ++F+Y+++T +P S+DWR+KGAV  +K+QG C 
Sbjct: 100 ADLTHEEFKGRYLGLAKPQFSRKRQPSANFRYRDITDLPKSVDWRKKGAVAPVKDQGQCG 159

Query: 125 ACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIA 184
           +CWAFS VAAVEGI QI++GNL  LSEQ+L+DC +  NSGC  G  D AF+YII   G+ 
Sbjct: 160 SCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGCNGGLMDYAFQYIISTGGLH 219

Query: 185 TEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDF 242
            E DYPY   +G C   +E      IS YE +P  D+++L+KA++ QPVS+ IE +G+DF
Sbjct: 220 KEDDYPYLMEEGICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDF 279

Query: 243 KNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD---- 298
           + YKGG+FNG CGT LDH V  +G+G+++ G+ Y ++KNSWG  WGE G++R++R+    
Sbjct: 280 QFYKGGVFNGKCGTDLDHGVAAVGYGSSK-GSDYVIVKNSWGPRWGEKGFIRMKRNTGKP 338

Query: 299 EGLCGIGTQAAYP 311
           EGLCGI   A+YP
Sbjct: 339 EGLCGINKMASYP 351
Probable thiol protease.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|P43297|RD21A_ARATH Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1 Back     alignment and function description
>sp|O65039|CYSEP_RICCO Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1 Back     alignment and function description
>sp|Q9FGR9|CEP1_ARATH KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1 Back     alignment and function description
>sp|P43156|CYSP_HEMSP Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1 Back     alignment and function description
>sp|P12412|CYSEP_VIGMU Vignain OS=Vigna mungo PE=1 SV=1 Back     alignment and function description
>sp|P25803|CYSEP_PHAVU Vignain OS=Phaseolus vulgaris PE=2 SV=2 Back     alignment and function description
>sp|P25777|ORYB_ORYSJ Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2 Back     alignment and function description
>sp|Q9LM66|XCP2_ARATH Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2 Back     alignment and function description
>sp|P25251|CYSP4_BRANA Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
255563110344 cysteine protease, putative [Ricinus com 0.952 0.866 0.547 4e-98
297819568341 hypothetical protein ARALYDRAFT_348033 [ 0.964 0.885 0.538 3e-96
224076970340 predicted protein [Populus trichocarpa] 0.945 0.870 0.545 3e-95
224076968305 predicted protein [Populus trichocarpa] 0.952 0.977 0.535 8e-95
255564908342 cysteine protease, putative [Ricinus com 0.952 0.871 0.535 4e-94
18408828341 putative cysteine proteinase [Arabidopsi 0.952 0.873 0.537 4e-94
144905104342 cysteine proteinase [Lotus japonicus] 0.948 0.868 0.522 7e-94
409190991342 cysteine proteinase [Lotus japonicus] 0.948 0.868 0.525 8e-94
255564910341 cysteine protease, putative [Ricinus com 0.948 0.870 0.541 1e-93
225446583341 PREDICTED: KDEL-tailed cysteine endopept 0.952 0.873 0.532 1e-93
>gi|255563110|ref|XP_002522559.1| cysteine protease, putative [Ricinus communis] gi|223538250|gb|EEF39859.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 173/316 (54%), Positives = 233/316 (73%), Gaps = 18/316 (5%)

Query: 8   SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQ 67
           S+  +H+ WM ++GR YK  +EK+ RFKIFK+N+E+I+  NNN N      + Y+LG N 
Sbjct: 33  SMELRHKTWMTQYGRVYKGNVEKEKRFKIFKENVEFIESFNNNGN------KPYKLGINA 86

Query: 68  FSDLTNAEFRASYAGNSMAITSQHSS-----FKYQNLTQVPTSMDWREKGAVTSIKNQGG 122
           F+DLTN EFRAS+ G +M+++S  SS     F+Y+N+T VP S+DWR KGAVT IK+QG 
Sbjct: 87  FTDLTNEEFRASHNGYTMSMSSHQSSYRTKSFRYENVTAVPPSLDWRTKGAVTHIKDQGQ 146

Query: 123 CAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNG-NSGCVAGKSDIAFKYIIKNQ 181
           C  CWAFSAVAA+EGIT++S+G LI LSEQ+L+DC ++G + GC  G  D AF++II+N 
Sbjct: 147 CGCCWAFSAVAAMEGITKLSTGTLISLSEQELVDCDTSGMDQGCEGGLMDDAFEFIIENN 206

Query: 182 GIATEADYPYHQVQGSCGREHAA--AAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTG 239
           G+ TEA+YPY  V GSC    AA  AAKI+ YE +P+ DE+AL KAV+ QPVS+ I+   
Sbjct: 207 GLTTEANYPYEGVDGSCNTRKAANHAAKITGYENVPAYDEEALRKAVANQPVSVAIDAGE 266

Query: 240 QDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD- 298
             F++Y  GIF G CGT+LDH VT++G+GT++DGTKYWL+KNSWG +WGE GY+R++RD 
Sbjct: 267 SAFQHYSSGIFTGDCGTELDHGVTVVGYGTSDDGTKYWLVKNSWGTSWGEDGYIRMERDI 326

Query: 299 ---EGLCGIGTQAAYP 311
              EGLCGI  + +YP
Sbjct: 327 DAKEGLCGIAMEPSYP 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297819568|ref|XP_002877667.1| hypothetical protein ARALYDRAFT_348033 [Arabidopsis lyrata subsp. lyrata] gi|297323505|gb|EFH53926.1| hypothetical protein ARALYDRAFT_348033 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224076970|ref|XP_002305073.1| predicted protein [Populus trichocarpa] gi|222848037|gb|EEE85584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224076968|ref|XP_002305072.1| predicted protein [Populus trichocarpa] gi|222848036|gb|EEE85583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564908|ref|XP_002523447.1| cysteine protease, putative [Ricinus communis] gi|223537275|gb|EEF38906.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|18408828|ref|NP_566920.1| putative cysteine proteinase [Arabidopsis thaliana] gi|12324451|gb|AAG52191.1|AC012329_18 putative cysteine proteinase; 15366-14136 [Arabidopsis thaliana] gi|6723404|emb|CAB66413.1| cysteine protease-like protein [Arabidopsis thaliana] gi|332645009|gb|AEE78530.1| putative cysteine proteinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|144905104|dbj|BAF56427.1| cysteine proteinase [Lotus japonicus] Back     alignment and taxonomy information
>gi|409190991|gb|AFV30165.1| cysteine proteinase [Lotus japonicus] Back     alignment and taxonomy information
>gi|255564910|ref|XP_002523448.1| cysteine protease, putative [Ricinus communis] gi|223537276|gb|EEF38907.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225446583|ref|XP_002280204.1| PREDICTED: KDEL-tailed cysteine endopeptidase CEP1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query313
TAIR|locus:2082881341 AT3G49340 [Arabidopsis thalian 0.952 0.873 0.496 3.7e-80
TAIR|locus:2038588348 AT2G27420 [Arabidopsis thalian 0.955 0.859 0.5 1e-77
TAIR|locus:2055440345 AT2G34080 [Arabidopsis thalian 0.955 0.866 0.451 3.6e-73
TAIR|locus:2152445346 SAG12 "senescence-associated g 0.942 0.852 0.473 5.9e-73
TAIR|locus:2029924355 AT1G29090 [Arabidopsis thalian 0.948 0.836 0.442 3e-69
TAIR|locus:2825832 462 RD21A "responsive to dehydrati 0.958 0.649 0.440 4.9e-69
TAIR|locus:2122113355 XCP1 "xylem cysteine peptidase 0.942 0.830 0.440 4.9e-69
TAIR|locus:2167821 463 RD21B "esponsive to dehydratio 0.932 0.630 0.432 8.2e-67
TAIR|locus:2024362 437 XBCP3 "xylem bark cysteine pep 0.971 0.695 0.425 2.2e-66
TAIR|locus:2029934346 AT1G29080 [Arabidopsis thalian 0.955 0.864 0.418 2.2e-66
TAIR|locus:2082881 AT3G49340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 158/318 (49%), Positives = 209/318 (65%)

Query:     8 SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVXXXXXXXEGINRTYQLGTNQ 67
             S  EKHE+WM+   R Y D+ EK  RF+IF  NL++++ +          N+TY L  N+
Sbjct:    30 SAVEKHEQWMSRFNRVYSDDSEKTSRFEIFTNNLKFVESINMNT------NKTYTLDVNE 83

Query:    68 FSDLTNAEFRASYAG-------NSMAITSQHS--SFKYQNLTQVPTSMDWREKGAVTSIK 118
             FSDLT+ EF+A Y G         ++ T  H   SF+Y+N+ +   SMDW ++GAVTS+K
Sbjct:    84 FSDLTDEEFKARYTGLVVPEGMTRISTTDSHETVSFRYENVGETGESMDWIQEGAVTSVK 143

Query:   119 NQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYII 178
             +Q               EG+T+I++G L+ LSEQQLLDCS+  N+GC  G    AF YI 
Sbjct:   144 HQQQCGCCWAFSAVAAVEGMTKIANGELVSLSEQQLLDCSTE-NNGCGGGIMWKAFDYIK 202

Query:   179 KNQGIATEADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGT 238
             +NQGI TE +YPY   Q +C   H AAA IS YE +P  DE+ALLKAVS QPVS+ IEG+
Sbjct:   203 ENQGITTEDNYPYQGAQQTCESNHLAAATISGYETVPQNDEEALLKAVSQQPVSVAIEGS 262

Query:   239 GQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD 298
             G +F +Y GGIFNG CGTQL HAVTI+G+G +E+G KYWL+KNSWG++WGE GYMRI RD
Sbjct:   263 GYEFIHYSGGIFNGECGTQLTHAVTIVGYGVSEEGIKYWLLKNSWGESWGENGYMRIMRD 322

Query:   299 ----EGLCGIGTQAAYPI 312
                 +G+CG+ + A YP+
Sbjct:   323 VDSPQGMCGLASLAYYPV 340
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
TAIR|locus:2038588 AT2G27420 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055440 AT2G34080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152445 SAG12 "senescence-associated gene 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029924 AT1G29090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825832 RD21A "responsive to dehydration 21A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122113 XCP1 "xylem cysteine peptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2167821 RD21B "esponsive to dehydration 21B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024362 XBCP3 "xylem bark cysteine peptidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029934 AT1G29080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q95029CATL_DROME3, ., 4, ., 2, 2, ., 1, 50.40.96480.8140yesno
Q23894CYSP3_DICDI3, ., 4, ., 2, 2, ., -0.39870.91370.8486yesno
O70370CATS_MOUSE3, ., 4, ., 2, 2, ., 2, 70.40460.93290.8588yesno
P25774CATS_HUMAN3, ., 4, ., 2, 2, ., 2, 70.38030.92650.8761yesno
P25326CATS_BOVIN3, ., 4, ., 2, 2, ., 2, 70.39670.92650.8761yesno
Q8HY81CATS_CANFA3, ., 4, ., 2, 2, ., 2, 70.39340.92650.8761yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pg.C_scaffold_5001425
annotation not avaliable (341 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
pfam00112213 pfam00112, Peptidase_C1, Papain family cysteine pr 1e-102
cd02248210 cd02248, Peptidase_C1A, Peptidase C1A subfamily (M 1e-94
smart00645175 smart00645, Pept_C1, Papain family cysteine protea 8e-77
PTZ00200448 PTZ00200, PTZ00200, cysteine proteinase; Provision 1e-66
PTZ00021489 PTZ00021, PTZ00021, falcipain-2; Provisional 5e-65
PTZ00203348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 7e-53
cd02620236 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro 7e-38
cd02621243 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al 3e-31
cd02619223 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS 3e-31
cd02698239 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th 3e-28
smart0084857 smart00848, Inhibitor_I29, Cathepsin propeptide in 2e-20
pfam0824658 pfam08246, Inhibitor_I29, Cathepsin propeptide inh 3e-18
COG4870372 COG4870, COG4870, Cysteine protease [Posttranslati 2e-15
PTZ00364548 PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs 8e-13
PTZ00049693 PTZ00049, PTZ00049, cathepsin C-like protein; Prov 3e-12
PTZ00462 1004 PTZ00462, PTZ00462, Serine-repeat antigen protein; 9e-09
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease Back     alignment and domain information 
 Score =  297 bits (763), Expect = e-102
 Identities = 111/215 (51%), Positives = 143/215 (66%), Gaps = 6/215 (2%)

Query: 102 VPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNG 161
           +P S DWREKGAVT +K+QG C +CWAFSAV A+EG   I +G L+ LSEQQL+DC   G
Sbjct: 1   LPESFDWREKGAVTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDC-DTG 59

Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDE 219
           N+GC  G  D AF+YI KN GI TE+DYPY    G+C   + ++  AKI  Y  +P  DE
Sbjct: 60  NNGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDGTCKFKKSNSKYAKIKGYGDVPYNDE 119

Query: 220 QALLKAV-SMQPVSINIEGTGQDFKNYKGGIFNGV-CGTQLDHAVTIIGFGTTEDGTKYW 277
           +AL  A+    PVS+ I+    DF+ YK G++    C  +LDHAV I+G+G TE+G  YW
Sbjct: 120 EALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTECSGELDHAVLIVGYG-TENGVPYW 178

Query: 278 LIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPI 312
           ++KNSWG  WGE GY RI R    CGI ++A+YPI
Sbjct: 179 IVKNSWGTDWGENGYFRIARGVNECGIASEASYPI 213

Length = 213
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional Back     alignment and domain information
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 313
KOG1542372 consensus Cysteine proteinase Cathepsin F [Posttra 100.0
PTZ00203348 cathepsin L protease; Provisional 100.0
PTZ00021489 falcipain-2; Provisional 100.0
PTZ00200448 cysteine proteinase; Provisional 100.0
KOG1543325 consensus Cysteine proteinase Cathepsin L [Posttra 100.0
cd02621243 Peptidase_C1A_CathepsinC Cathepsin C; also known a 100.0
cd02698239 Peptidase_C1A_CathepsinX Cathepsin X; the only pap 100.0
cd02248210 Peptidase_C1A Peptidase C1A subfamily (MEROPS data 100.0
cd02620236 Peptidase_C1A_CathepsinB Cathepsin B group; compos 100.0
PF00112219 Peptidase_C1: Papain family cysteine protease This 100.0
PTZ00049693 cathepsin C-like protein; Provisional 100.0
PTZ00364548 dipeptidyl-peptidase I precursor; Provisional 100.0
smart00645174 Pept_C1 Papain family cysteine protease. 100.0
cd02619223 Peptidase_C1 C1 Peptidase family (MEROPS database 100.0
PTZ00462 1004 Serine-repeat antigen protein; Provisional 100.0
KOG1544470 consensus Predicted cysteine proteinase TIN-ag [Ge 100.0
COG4870372 Cysteine protease [Posttranslational modification, 99.97
cd00585437 Peptidase_C1B Peptidase C1B subfamily (MEROPS data 99.92
PF03051438 Peptidase_C1_2: Peptidase C1-like family This fami 99.77
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 99.74
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 99.58
COG3579444 PepC Aminopeptidase C [Amino acid transport and me 99.13
KOG4128 457 consensus Bleomycin hydrolases and aminopeptidases 97.82
PF13529144 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3 97.29
PF05543175 Peptidase_C47: Staphopain peptidase C47; InterPro: 97.01
PF0812741 Propeptide_C1: Peptidase family C1 propeptide; Int 95.94
PF12385166 Peptidase_C70: Papain-like cysteine protease AvrRp 90.73
PF14399 317 Transpep_BrtH: NlpC/p60-like transpeptidase 90.21
COG4990195 Uncharacterized protein conserved in bacteria [Fun 83.65
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=3.8e-86  Score=585.24  Aligned_cols=294  Identities=37%  Similarity=0.746  Sum_probs=263.4

Q ss_pred             HHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCCcccc
Q 041011            9 IAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNSMAIT   88 (313)
Q Consensus         9 ~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~~~~~   88 (313)
                      +.+.|..|+.+|+|+|.+.+|..+|+.||++|+..++++++. +.  |   |...|+|+|||||+|||++++++.+....
T Consensus        67 ~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~-d~--g---sA~yGvtqFSDlT~eEFkk~~l~~~~~~~  140 (372)
T KOG1542|consen   67 LEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQEN-DP--G---SAEYGVTQFSDLTEEEFKKIYLGVKRRGS  140 (372)
T ss_pred             hHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhc-Cc--c---ccccCccchhhcCHHHHHHHhhccccccc
Confidence            478999999999999999999999999999999999999886 44  2   88999999999999999999988766311


Q ss_pred             cc---CCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCCCCCCC
Q 041011           89 SQ---HSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGC  165 (313)
Q Consensus        89 ~~---~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~~~~gc  165 (313)
                      ..   ....+..+...||++||||++|.||||||||+||||||||+++++|+++++++|++++||||+|+||+. .++||
T Consensus       141 ~~~~~~~~~~~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~-~d~gC  219 (372)
T KOG1542|consen  141 KLPGDAAEAPIEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDS-CDNGC  219 (372)
T ss_pred             cCccccccCcCCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccC-cCCcC
Confidence            11   111112334589999999999999999999999999999999999999999999999999999999998 58999


Q ss_pred             CCCChHHHHHHHHHhCCcCCCCCccCCCCCC-CcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEcccccc
Q 041011          166 VAGKSDIAFKYIIKNQGIATEADYPYHQVQG-SCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQDF  242 (313)
Q Consensus       166 ~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~-~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~f  242 (313)
                      +||.+..|++|+++.+|+..|++|||++..+ .|... ....+.|.+|..++ .||++|.+.|. +|||+|+|++.  .+
T Consensus       220 ~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~--~m  296 (372)
T KOG1542|consen  220 NGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAK--PM  296 (372)
T ss_pred             CCCChhHHHHHHHHhCCccccccCCccccCCCccccchhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchH--HH
Confidence            9999999999988888999999999999988 89988 67788999999998 69999999888 69999999965  89


Q ss_pred             ccccCceEeC---CCCCC-CCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCCCccccccceeeee
Q 041011          243 KNYKGGIFNG---VCGTQ-LDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDEGLCGIGTQAAYPI  312 (313)
Q Consensus       243 ~~y~~Giy~~---~~~~~-~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~Cgi~~~~~~p~  312 (313)
                      +.|++||+.+   .|++. ++|||+|||||.+.-.++|||||||||++|||+||+||.||.|.|||+++++-+.
T Consensus       297 Q~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mvss~~  370 (372)
T KOG1542|consen  297 QFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMVSSAA  370 (372)
T ss_pred             HHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccchhhhh
Confidence            9999999998   39865 8999999999997438999999999999999999999999999999999987654

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification Back     alignment and domain information
>PTZ00049 cathepsin C-like protein; Provisional Back     alignment and domain information
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>smart00645 Pept_C1 Papain family cysteine protease Back     alignment and domain information
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>PTZ00462 Serine-repeat antigen protein; Provisional Back     alignment and domain information
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only] Back     alignment and domain information
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) Back     alignment and domain information
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism] Back     alignment and domain information
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A Back     alignment and domain information
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A Back     alignment and domain information
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes Back     alignment and domain information
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase Back     alignment and domain information
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
1s4v_A229 The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst 2e-61
2fo5_A262 Crystal Structure Of Recombinant Barley Cysteine En 1e-55
1pci_A322 Procaricain Length = 322 8e-55
3tnx_A363 Structure Of The Precursor Of A Thermostable Varian 2e-54
1cqd_A221 The 2.1 Angstrom Structure Of A Cysteine Protease W 3e-52
3p5u_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 1e-51
3p5w_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 1e-51
2pns_A208 1.9 Angstrom Resolution Crystal Structure Of A Plan 5e-49
1aec_A218 Crystal Structure Of Actinidin-E-64 Complex+ Length 1e-48
3bcn_A209 Crystal Structure Of A Papain-Like Cysteine Proteas 3e-48
2act_A220 Crystallographic Refinement Of The Structure Of Act 3e-48
1o0e_A208 1.9 Angstrom Crystal Structure Of A Plant Cysteine 2e-47
1iwd_A215 Proposed Amino Acid Sequence And The 1.63 Angstrom 6e-47
2bdz_A214 Mexicain From Jacaratia Mexicana Length = 214 1e-46
1yal_A218 Carica Papaya Chymopapain At 1.7 Angstroms Resoluti 3e-46
1cjl_A312 Crystal Structure Of A Cysteine Protease Proform Le 3e-45
2c0y_A315 The Crystal Structure Of A Cys25ala Mutant Of Human 1e-44
1cs8_A316 Crystal Structure Of Procathepsin L Length = 316 2e-44
1gec_E216 Glycyl Endopeptidase-complex With Benzyloxycarbonyl 3e-42
3u8e_A222 Crystal Structure Of Cysteine Protease From Bulbs O 5e-42
3hwn_A258 Cathepsin L With Az13010160 Length = 258 1e-41
7pck_A314 Crystal Structure Of Wild Type Human Procathepsin K 5e-41
3ioq_A213 Crystal Structure Of The Carica Candamarcensis Cyst 1e-40
3qj3_A331 Structure Of Digestive Procathepsin L2 Proteinase F 2e-40
3qt4_A329 Structure Of Digestive Procathepsin L 3 Of Tenebrio 3e-40
1ppo_A216 Determination Of The Structure Of Papaya Protease O 7e-40
2cio_A212 The High Resolution X-Ray Structure Of Papain Compl 9e-40
3ima_A212 Complex Strcuture Of Tarocystatin And Papain Length 1e-39
2o6x_A310 Crystal Structure Of Procathepsin L1 From Fasciola 1e-39
1khp_A212 Monoclinic Form Of Papain/zlfg-dam Covalent Complex 2e-39
1meg_A216 Crystal Structure Of A Caricain D158e Mutant In Com 2e-39
1stf_E212 The Refined 2.4 Angstroms X-Ray Crystal Structure O 6e-39
1pip_A212 Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al 7e-39
1ppp_A212 Crystal Structure Of Papain-E64-C Complex. Binding 1e-38
3f75_A224 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 2e-38
3h6s_A221 Strucure Of Clitocypin - Cathepsin V Complex Length 3e-38
2nqd_B221 Crystal Structure Of Cysteine Protease Inhibitor, C 3e-38
1fh0_A221 Crystal Structure Of Human Cathepsin V Complexed Wi 3e-38
2fye_A217 Mutant Human Cathepsin S With Irreversible Inhibito 4e-38
3of8_A221 Structural Basis For Reversible And Irreversible In 5e-38
3iv2_A220 Crystal Structure Of Mature Apo-Cathepsin L C25a Mu 5e-38
3kwn_A219 Cathepsin S In Complex With Thioether Acetamide P3 5e-38
1ms6_A222 Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L 5e-38
3mpe_A220 Crystal Structure Of Human Cathepsin-S C25s Mutant 5e-38
3iej_A222 Pyrazole-Based Cathepsin S Inhibitors With Arylalky 6e-38
3bc3_A220 Exploring Inhibitor Binding At The S Subsites Of Ca 6e-38
2f1g_A220 Cathepsin S In Complex With Non-Covalent 2-(Benzoxa 6e-38
3kse_A220 Unreduced Cathepsin L In Complex With Stefin A Leng 7e-38
3n3g_A217 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri 7e-38
3hha_A220 Crystal Structure Of Cathepsin L In Complex With Az 7e-38
3h89_A220 A Combined Crystallographic And Molecular Dynamics 7e-38
1glo_A217 Crystal Structure Of Cys25ser Mutant Of Human Cathe 8e-38
1npz_A217 Crystal Structures Of Cathepsin S Inhibitor Complex 8e-38
3ovx_A218 Cathepsin S In Complex With A Covalent Inhibitor Wi 8e-38
2fq9_A225 Cathepsin S With Nitrile Inhibitor Length = 225 9e-38
2g6d_A217 Human Cathepsin S Mutant With Vinyl Sulfone Inhibit 2e-37
2vhs_A217 Cathsilicatein, A Chimera Length = 217 3e-37
3h7d_A215 The Crystal Structure Of The Cathepsin K Variant M5 1e-35
8pch_A220 Crystal Structure Of Porcine Cathepsin H Determined 6e-35
1u9v_A217 Crystal Structure Of The Cysteine Protease Human Ca 9e-35
1mem_A215 Crystal Structure Of Cathepsin K Complexed With A P 1e-34
1snk_A214 Cathepsin K Complexed With Carbamate Derivatized No 1e-34
1vsn_A215 Crystal Structure Of A Potent Small Molecule Inhibi 3e-34
2f7d_A215 A Mutant Rabbit Cathepsin K With A Nitrile Inhibito 3e-34
2b1m_A246 Crystal Structure Of A Papain-Fold Protein Without 4e-34
3ovz_A213 Cathepsin K In Complex With A Covalent Inhibitor Wi 8e-34
3pnr_A240 Structure Of Pbicp-C In Complex With Falcipain-2 Le 4e-29
2p7u_A215 The Crystal Structure Of Rhodesain, The Major Cyste 4e-29
1yvb_A241 The Plasmodium Falciparum Cysteine Protease Falcipa 5e-29
3bpm_A243 Crystal Structure Of Falcipain-3 With Its Inhibitor 1e-26
1ewp_A215 Cruzain Bound To Mor-Leu-Hpq Length = 215 8e-25
1mhw_A175 Design Of Non-covalent Inhibitors Of Human Cathepsi 2e-24
3iut_A221 The Crystal Structure Of Cruzain In Complex With A 2e-24
3hd3_A215 High Resolution Crystal Structure Of Cruzain Bound 2e-24
1icf_A175 Crystal Structure Of Mhc Class Ii Associated P41 Ii 2e-24
1aim_A215 Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor 4e-24
1m6d_A214 Crystal Structure Of Human Cathepsin F Length = 214 1e-21
3d6s_A223 Crystal Structure Of Mite Allergen Der F 1 Length = 3e-18
3pdf_A441 Discovery Of Novel Cyanamide-Based Inhibitors Of Ca 2e-17
1xkg_A312 Crystal Structure Of The Major House Dust Mite Alle 4e-16
1jqp_A438 Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric 1e-15
3f5v_A222 C2 Crystal Form Of Mite Allergen Der P 1 Length = 2 3e-14
3qsd_A254 Structure Of Cathepsin B1 From Schistosoma Mansoni 3e-14
3rvw_A222 Crystal Structure Of Der P 1 Complexed With Fab 4c1 3e-14
2as8_A222 Crystal Structure Of Mature And Fully Active Der P 4e-14
1deu_A277 Crystal Structure Of Human Procathepsin X: A Cystei 4e-14
1ef7_A242 Crystal Structure Of Human Cathepsin X Length = 242 1e-13
3mor_A317 Crystal Structure Of Cathepsin B From Trypanosoma B 3e-10
3hhi_A325 Crystal Structure Of Cathepsin B From T. Brucei In 3e-10
1pbh_A317 Crystal Structure Of Human Recombinant Procathepsin 3e-10
4hwy_A340 Trypanosoma Brucei Procathepsin B Solved From 40 Fs 3e-10
1qdq_A253 X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 4e-10
1gmy_A261 Cathepsin B Complexed With Dipeptidyl Nitrile Inhib 4e-10
3ai8_B256 Cathepsin B In Complex With The Nitroxoline Length 4e-10
3cbj_A266 Chagasin-cathepsin B Complex Length = 266 4e-10
3k9m_A254 Cathepsin B In Complex With Stefin A Length = 254 5e-10
1ito_A256 Crystal Structure Analysis Of Bovine Spleen Catheps 5e-10
1huc_B205 The Refined 2.15 Angstroms X-Ray Crystal Structure 5e-10
1sp4_B205 Crystal Structure Of Ns-134 In Complex With Bovine 6e-10
1k3b_C69 Crystal Structure Of Human Dipeptidyl Peptidase I ( 2e-09
1mir_A322 Rat Procathepsin B Length = 322 3e-09
1cpj_A260 Crystal Structures Of Recombinant Rat Cathepsin B A 4e-09
1cte_A254 Crystal Structures Of Recombinant Rat Cathepsin B A 4e-09
2wbf_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 2e-07
3ch2_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 5e-07
1icf_B42 Crystal Structure Of Mhc Class Ii Associated P41 Ii 2e-06
3f75_P106 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 4e-04
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (592), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 102 VPTSMDWREKGAVTSIKNQGGXXXXXXXXXXXXXEGITQISSGNLIRLSEQQLLDCSSNG 161
           VP S+DWR+KGAVTS+K+QG              EGI QI +  L+ LSEQ+L+DC ++ 
Sbjct: 2   VPASVDWRKKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQ 61
Query: 162 NSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDE 219
           N GC  G  D AF++I +  GI TEA+YPY    G+C   +E+A A  I  +E +P  DE
Sbjct: 62  NQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDE 121
Query: 220 QALLKAVSMQPVSINIEGTGQDFKNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLI 279
            ALLKAV+ QPVS+ I+  G DF+ Y  G+F G CGT+LDH V I+G+GTT DGTKYW +
Sbjct: 122 NALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTV 181
Query: 280 KNSWGDTWGEAGYMRIQR----DEGLCGIGTQAAYPI 312
           KNSWG  WGE GY+R++R     EGLCGI  +A+YPI
Sbjct: 182 KNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPI 218
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262 Back     alignment and structure
>pdb|1PCI|A Chain A, Procaricain Length = 322 Back     alignment and structure
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363 Back     alignment and structure
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221 Back     alignment and structure
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208 Back     alignment and structure
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218 Back     alignment and structure
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209 Back     alignment and structure
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220 Back     alignment and structure
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208 Back     alignment and structure
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215 Back     alignment and structure
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214 Back     alignment and structure
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218 Back     alignment and structure
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312 Back     alignment and structure
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315 Back     alignment and structure
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316 Back     alignment and structure
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216 Back     alignment and structure
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222 Back     alignment and structure
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258 Back     alignment and structure
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314 Back     alignment and structure
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213 Back     alignment and structure
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 Back     alignment and structure
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329 Back     alignment and structure
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216 Back     alignment and structure
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212 Back     alignment and structure
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212 Back     alignment and structure
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310 Back     alignment and structure
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212 Back     alignment and structure
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216 Back     alignment and structure
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212 Back     alignment and structure
>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212 Back     alignment and structure
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212 Back     alignment and structure
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224 Back     alignment and structure
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221 Back     alignment and structure
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221 Back     alignment and structure
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221 Back     alignment and structure
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217 Back     alignment and structure
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221 Back     alignment and structure
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220 Back     alignment and structure
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219 Back     alignment and structure
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222 Back     alignment and structure
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220 Back     alignment and structure
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222 Back     alignment and structure
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220 Back     alignment and structure
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220 Back     alignment and structure
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220 Back     alignment and structure
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217 Back     alignment and structure
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220 Back     alignment and structure
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220 Back     alignment and structure
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217 Back     alignment and structure
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217 Back     alignment and structure
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218 Back     alignment and structure
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225 Back     alignment and structure
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217 Back     alignment and structure
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217 Back     alignment and structure
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215 Back     alignment and structure
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220 Back     alignment and structure
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217 Back     alignment and structure
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215 Back     alignment and structure
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214 Back     alignment and structure
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215 Back     alignment and structure
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215 Back     alignment and structure
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246 Back     alignment and structure
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213 Back     alignment and structure
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240 Back     alignment and structure
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215 Back     alignment and structure
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241 Back     alignment and structure
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243 Back     alignment and structure
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215 Back     alignment and structure
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175 Back     alignment and structure
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221 Back     alignment and structure
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215 Back     alignment and structure
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175 Back     alignment and structure
>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215 Back     alignment and structure
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214 Back     alignment and structure
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223 Back     alignment and structure
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 Back     alignment and structure
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312 Back     alignment and structure
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 Back     alignment and structure
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222 Back     alignment and structure
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 Back     alignment and structure
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222 Back     alignment and structure
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222 Back     alignment and structure
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 Back     alignment and structure
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 Back     alignment and structure
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 Back     alignment and structure
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 Back     alignment and structure
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 Back     alignment and structure
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 Back     alignment and structure
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 Back     alignment and structure
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 Back     alignment and structure
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 Back     alignment and structure
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 Back     alignment and structure
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 Back     alignment and structure
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 Back     alignment and structure
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 Back     alignment and structure
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 Back     alignment and structure
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69 Back     alignment and structure
>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 Back     alignment and structure
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 Back     alignment and structure
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 Back     alignment and structure
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265 Back     alignment and structure
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265 Back     alignment and structure
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 42 Back     alignment and structure
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 106 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query313
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 1e-155
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 1e-149
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 1e-149
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 1e-146
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 1e-144
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 1e-142
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 1e-141
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 1e-140
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 1e-122
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 1e-122
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 1e-121
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 1e-120
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 1e-119
1cqd_A221 Protein (protease II); cysteine protease, glycopro 1e-118
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 1e-118
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 1e-117
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 1e-116
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 1e-116
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 1e-115
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 1e-112
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 1e-112
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 1e-112
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 1e-110
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 1e-110
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 1e-110
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 1e-109
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 1e-109
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 1e-108
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 1e-107
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 1e-106
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 1e-101
3u8e_A222 Papain-like cysteine protease; papain-like cystein 1e-92
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 3e-90
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 8e-89
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 4e-81
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 8e-81
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 4e-77
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 2e-68
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 6e-61
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 2e-27
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 1e-21
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 1e-08
3pw3_A 383 Aminopeptidase C; bleomycin, cysteine proteinase f 7e-07
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
 Score =  435 bits (1122), Expect = e-155
 Identities = 134/314 (42%), Positives = 185/314 (58%), Gaps = 19/314 (6%)

Query: 8   SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQ 67
            + +    WM  H + Y++  EK  RF+IFK NL YID+ N  NNS       Y LG N+
Sbjct: 17  RLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNS-------YWLGLNE 69

Query: 68  FSDLTNAEFRASYAG---NSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCA 124
           F+DL+N EF   Y G   ++    S    F  +++  +P ++DWR+KGAVT +++QG C 
Sbjct: 70  FADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDIVNLPENVDWRKKGAVTPVRHQGSCG 129

Query: 125 ACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIA 184
           +CWAFSAVA VEGI +I +G L+ LSEQ+L+DC    + GC  G    A +Y+ KN GI 
Sbjct: 130 SCWAFSAVATVEGINKIRTGKLVELSEQELVDC-ERRSHGCKGGYPPYALEYVAKN-GIH 187

Query: 185 TEADYPYHQVQGSC--GREHAAAAKISSYEVLPSGDEQALLKAVSMQPVSINIEGTGQDF 242
             + YPY   QG+C   +      K S    +   +E  LL A++ QPVS+ +E  G+ F
Sbjct: 188 LRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPF 247

Query: 243 KNYKGGIFNGVCGTQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRD---- 298
           + YKGGIF G CGT++D AVT +G+G    G  Y LIKNSWG  WGE GY+RI+R     
Sbjct: 248 QLYKGGIFEGPCGTKVDGAVTAVGYG-KSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 306

Query: 299 EGLCGIGTQAAYPI 312
            G+CG+   + YP 
Sbjct: 307 PGVCGLYKSSYYPT 320
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216 Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208 Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265 Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325 Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277 Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317 Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291 Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106 Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 100.0
3tnx_A363 Papain; hydrolase, cytoplasm for recombinant expre 100.0
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 100.0
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 100.0
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 100.0
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 100.0
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 100.0
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 100.0
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 100.0
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 100.0
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 100.0
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 100.0
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 100.0
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 100.0
1cqd_A221 Protein (protease II); cysteine protease, glycopro 100.0
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 100.0
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 100.0
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 100.0
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 100.0
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 100.0
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 100.0
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 100.0
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 100.0
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 100.0
3u8e_A222 Papain-like cysteine protease; papain-like cystein 100.0
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 100.0
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 100.0
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 100.0
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 100.0
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 100.0
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 100.0
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 100.0
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 100.0
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 100.0
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 100.0
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 100.0
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 100.0
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 100.0
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 100.0
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 100.0
2cb5_A453 Protein (bleomycin hydrolase); aminopeptidase, cys 100.0
2e01_A457 Cysteine proteinase 1; bleomycin hydrolase, thiol 100.0
3pw3_A383 Aminopeptidase C; bleomycin, cysteine proteinase f 100.0
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 99.82
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 99.76
1pxv_A183 Cysteine protease; hydrolase; 1.80A {Staphylococcu 97.48
1cv8_A174 Staphopain; cysteine protease, thiol protease, pap 97.41
1x9y_A367 Cysteine proteinase; half-barrel, barrel-sandwich- 97.33
3erv_A236 Putative C39-like peptidase; structural genomics, 89.81
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
Probab=100.00  E-value=3.7e-88  Score=623.00  Aligned_cols=306  Identities=37%  Similarity=0.710  Sum_probs=269.9

Q ss_pred             chhhhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhc
Q 041011            2 NEAASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYA   81 (313)
Q Consensus         2 ~~~~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~   81 (313)
                      +.-.+..++.+|++|+++|+|.|.+.+|+.+|++||++|+++|++||++...   +..+|++|+|+|+|||.+||+++++
T Consensus        11 ~~~~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~---g~~sy~lg~N~FaDlt~eEf~~~~~   87 (331)
T 3qj3_A           11 SALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQ---GLVSYTLGVNLFTDMTPEEMKAYTH   87 (331)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSCSEEECCSTTTTCCHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhcc---CCCceeecccccccCCHHHHHHHhc
Confidence            4445778899999999999999999899999999999999999999986221   1239999999999999999999888


Q ss_pred             CCCcccccc--CCccccC------CCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCC--ccccCH
Q 041011           82 GNSMAITSQ--HSSFKYQ------NLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGN--LIRLSE  151 (313)
Q Consensus        82 ~~~~~~~~~--~~~~~~~------~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~LS~  151 (313)
                      +.+++....  ...+...      ...+||++||||++|+||||||||.||||||||++++||++++++++.  .++||+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LSe  167 (331)
T 3qj3_A           88 GLIMPADLHKNGIPIKTREDLGLNASVRYPASFDWRDQGMVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSE  167 (331)
T ss_dssp             CCCCCSSTTTTCEEECSGGGGTCCSSCCCCSSEEGGGGTCSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBCH
T ss_pred             cccccccccccCcccccccccccccccCCCcceecccCCccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcCH
Confidence            765432111  1111111      223799999999999999999999999999999999999999999998  899999


Q ss_pred             HHHhhhcCCCCCCCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cC
Q 041011          152 QQLLDCSSNGNSGCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQ  229 (313)
Q Consensus       152 q~l~dc~~~~~~gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~g  229 (313)
                      |+|+||+.. +.||+||++..|+.|+.+++||++|++|||.+.++.|... .....++.+|..++..++++|+++|+ +|
T Consensus       168 Q~LvdC~~~-~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~G  246 (331)
T 3qj3_A          168 QQLVDCVPN-ALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKG  246 (331)
T ss_dssp             HHHHHHCTT-SCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHC
T ss_pred             HHHhhhccC-CCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCC
Confidence            999999985 8899999999999999998899999999999999999876 55667899999998779999999999 59


Q ss_pred             CeEEEEEccccccccccCceEeCC-CC-CCCCeEEEEEEecccCCCceEEEEEcCCCCCCCCCceEEEEcCC-Ccccccc
Q 041011          230 PVSINIEGTGQDFKNYKGGIFNGV-CG-TQLDHAVTIIGFGTTEDGTKYWLIKNSWGDTWGEAGYMRIQRDE-GLCGIGT  306 (313)
Q Consensus       230 PV~v~~~~~~~~f~~y~~Giy~~~-~~-~~~~Hav~iVGyg~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~-~~Cgi~~  306 (313)
                      ||+|+|++. .+|+.|++|||..+ |+ ..++|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||++
T Consensus       247 PV~v~i~a~-~~f~~Y~~Gvy~~~~c~~~~~~HaV~iVGyg~~-~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~  324 (331)
T 3qj3_A          247 PVAVAFDAD-DPFGSYSGGVYYNPTCETNKFTHAVLIVGYGNE-NGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAG  324 (331)
T ss_dssp             CEEEEECCC-TTGGGEEEEEECCTTCCSSCCCEEEEEEEEEEE-TTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTT
T ss_pred             CEEEEEEcc-cccccccCceEeCCCCCCCcCCEEEEEEEEecc-CCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCC
Confidence            999999998 45999999999987 86 578999999999987 7999999999999999999999999996 9999999


Q ss_pred             ceeeeeC
Q 041011          307 QAAYPIT  313 (313)
Q Consensus       307 ~~~~p~~  313 (313)
                      +++||+|
T Consensus       325 ~~~~p~v  331 (331)
T 3qj3_A          325 VASVPTL  331 (331)
T ss_dssp             SCEEEEC
T ss_pred             ceeeeeC
Confidence            9999986
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A Back     alignment and structure
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1 Back     alignment and structure
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4 Back     alignment and structure
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 313
d1cs8a_316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 3e-71
d1s4va_224 d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor 6e-61
d1xkga1302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 3e-59
d1yala_218 d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ 4e-59
d1cqda_216 d.3.1.1 (A:) Proline-specific cysteine protease {G 1e-57
d1o0ea_208 d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv 2e-57
d2oula1241 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip 2e-56
d1aeca_218 d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi 7e-56
d2h7ja1217 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa 1e-55
d1ppoa_216 d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca 1e-55
d1m6da_214 d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta 3e-55
d1iwda_215 d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia 4e-55
g8pch.1228 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax 2e-53
d1fh0a_221 d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens 2e-53
d2r6na1215 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa 9e-52
d1khqa_212 d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId 1e-51
d1gmya_254 d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens 1e-48
d1me4a_215 d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 2e-48
d1deua_275 d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens 3e-45
g1k3b.1233 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase 4e-44
d3gcba_458 d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S 2e-08
d2cb5a_453 d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi 2e-06
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  221 bits (562), Expect = 3e-71
 Identities = 114/313 (36%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 8   SIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQ 67
           S+  +  KW A H R Y    E+  R  ++++N++ I+  N           ++ +  N 
Sbjct: 7   SLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREG---KHSFTMAMNA 62

Query: 68  FSDLTNAEFRASYAGNSMAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACW 127
           F D+T+ EFR    G       +   F+     + P S+DWREKG VT +KNQG C +CW
Sbjct: 63  FGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCW 122

Query: 128 AFSAVAAVEGITQISSGNLIRLSEQQLLDCSSNG-NSGCVAGKSDIAFKYIIKNQGIATE 186
           AFSA  A+EG     +G LI LSEQ L+DCS    N GC  G  D AF+Y+  N G+ +E
Sbjct: 123 AFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSE 182

Query: 187 ADYPYHQVQGSCGREHAAAAKISSYEVLPSGDEQALLKAVSMQ-PVSINIEGTGQDFKNY 245
             YPY   + SC      +    +  V     E+AL+KAV+   P+S+ I+   + F  Y
Sbjct: 183 ESYPYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFY 242

Query: 246 KGGIFNGV-CGTQ-LDHAVTIIGFGT---TEDGTKYWLIKNSWGDTWGEAGYMRIQRD-E 299
           K GI+    C ++ +DH V ++G+G      D  KYWL+KNSWG+ WG  GY+++ +D  
Sbjct: 243 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR 302

Query: 300 GLCGIGTQAAYPI 312
             CGI + A+YP 
Sbjct: 303 NHCGIASAASYPT 315
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 Back     information, alignment and structure
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 Back     information, alignment and structure
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458 Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query313
d1cs8a_316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 100.0
d1xkga1302 Major mite fecal allergen der p 1 {House-dust mite 100.0
d1ppoa_216 Caricain (protease omega) {Papaya (Carica papaya) 100.0
d1yala_218 Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d2h7ja1217 (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 100.0
d1cqda_216 Proline-specific cysteine protease {Ginger rhizome 100.0
d2oula1241 Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} 100.0
d1s4va_224 Vignain (bean endopeptidase) {Castor bean (Ricinus 100.0
d2r6na1215 (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 100.0
d1fh0a_221 (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 100.0
g8pch.1228 Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1m6da_214 Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1me4a_215 Cruzain {Trypanosoma cruzi [TaxId: 5693]} 100.0
d1aeca_218 Actinidin {Chinese gooseberry or kiwifruit (Actini 100.0
d1iwda_215 Ervatamin B {Adam's apple (Ervatamia coronaria) [T 100.0
d1khqa_212 Papain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d1o0ea_208 Ervatamin C {East indian rosebay (Ervatamia corona 100.0
g1k3b.1233 Cathepsin C (dipeptidyl peptidase I), catalytic do 100.0
d1deua_275 (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 100.0
d1gmya_254 (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 100.0
d3gcba_458 Bleomycin hydrolase {Baker's yeast (Saccharomyces 99.82
d2cb5a_ 453 Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 99.75
d1cv8a_173 Staphopain StpA {Staphylococcus aureus [TaxId: 128 97.14
d1pxva_183 Staphopain SspB {Staphylococcus aureus [TaxId: 128 96.94
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-82  Score=584.11  Aligned_cols=304  Identities=38%  Similarity=0.750  Sum_probs=261.0

Q ss_pred             hhhHHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcccEEEEcccCCCCCHHHHHHHhcCCC
Q 041011            5 ASISIAEKHEKWMAEHGRSYKDELEKDMRFKIFKQNLEYIDKVNNNNNSNEGINRTYQLGTNQFSDLTNAEFRASYAGNS   84 (313)
Q Consensus         5 ~~~~~~~~f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~I~~~N~~~~~~~~~~~~~~~g~N~fsd~t~~E~~~~~~~~~   84 (313)
                      .+..++.+|++|+++|+|.|.+ +|+.+|++||.+|+++|++||++...   +..+|+||+|+|+|||++||.++++...
T Consensus         4 ~~~~l~~~F~~f~~~~~K~Y~~-~ee~~R~~iF~~N~~~I~~~N~~~~~---~~~~~~~g~N~fsDlt~eEf~~~~~~~~   79 (316)
T d1cs8a_           4 FDHSLEAQWTKWKAMHNRLYGM-NEEGWRRAVWEKNMKMIELHNQEYRE---GKHSFTMAMNAFGDMTSEEFRQVMNGFQ   79 (316)
T ss_dssp             CCGGGHHHHHHHHHHTTCCCCT-THHHHHHHHHHHHHHHHHHHHHHHHT---TCCSEEECCCTTTTCCHHHHHHHHCCBC
T ss_pred             ccHHHHHHHHHHHHHhCCcCCC-HHHHHHHHHHHHHHHHHHHHHhHhhc---CCCceEEeceeccccCcHHHHhhhcccc
Confidence            4577889999999999999977 57789999999999999999986322   2349999999999999999999887655


Q ss_pred             ccccccCCccccCCCCCCCCeeecCCCCCcCcccCCCCCccHHHHHHHHHHhHhHHhhcCCccccCHHHHhhhcCC-CCC
Q 041011           85 MAITSQHSSFKYQNLTQVPTSMDWREKGAVTSIKNQGGCAACWAFSAVAAVEGITQISSGNLIRLSEQQLLDCSSN-GNS  163 (313)
Q Consensus        85 ~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~LS~q~l~dc~~~-~~~  163 (313)
                      ................+||++||||++|+|+||||||.||||||||+++++|++++++++..+.||+|+|+||+.. ++.
T Consensus        80 ~~~~~~~~~~~~~~~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~~~~~  159 (316)
T d1cs8a_          80 NRKPRKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNE  159 (316)
T ss_dssp             CCCCSCCEECCCCTTCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCC
T ss_pred             ccccccCccccCcccccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhccccccCC
Confidence            4333222222233445899999999999999999999999999999999999999999999999999999999864 578


Q ss_pred             CCCCCChHHHHHHHHHhCCcCCCCCccCCCCCCCcccC-CccceeecceEEcCCchHHHHHHHHh-cCCeEEEEEccccc
Q 041011          164 GCVAGKSDIAFKYIIKNQGIATEADYPYHQVQGSCGRE-HAAAAKISSYEVLPSGDEQALLKAVS-MQPVSINIEGTGQD  241 (313)
Q Consensus       164 gc~gG~~~~a~~~~~~~~Gi~~e~~yPy~~~~~~C~~~-~~~~~~i~~~~~v~~~~~~~i~~~l~-~gPV~v~~~~~~~~  241 (313)
                      +|.||.+..|+.|+..++++..|..|||......|... ......+..+.... .+.+.|+++|. +|||++++.+...+
T Consensus       160 ~c~gg~~~~a~~y~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gpv~v~i~~~~~~  238 (316)
T d1cs8a_         160 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIP-KQEKALMKAVATVGPISVAIDAGHES  238 (316)
T ss_dssp             GGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCCCCCCCGGGEEECCCCEEECC-SCHHHHHHHHHHHCCEEEEECCCSHH
T ss_pred             CCCCCchHHHHHHHHhcCccccccccccccccccccccccccccccccccccc-CcHHHHHHHHHHhCCeEEEEEeccch
Confidence            99999999999999999668899999999988888766 33445556666555 67888888887 69999999987678


Q ss_pred             cccccCceEeCC-CC-CCCCeEEEEEEeccc---CCCceEEEEEcCCCCCCCCCceEEEEcC-CCccccccceeeeeC
Q 041011          242 FKNYKGGIFNGV-CG-TQLDHAVTIIGFGTT---EDGTKYWLIKNSWGDTWGEAGYMRIQRD-EGLCGIGTQAAYPIT  313 (313)
Q Consensus       242 f~~y~~Giy~~~-~~-~~~~Hav~iVGyg~~---~~g~~ywivkNSWG~~WG~~Gy~~i~~~-~~~Cgi~~~~~~p~~  313 (313)
                      |..|++|||..+ |+ ..++|||+|||||.+   .++++|||||||||++|||+|||||+|+ .|+|||++.++||+|
T Consensus       239 f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI~~~~~yP~v  316 (316)
T d1cs8a_         239 FLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             HHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             hccccCCcccCCCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCccCCeeeeeeC
Confidence            999999999887 76 457999999999964   3688999999999999999999999998 599999999999997
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure