Citrus Sinensis ID: 041046

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240---
Protein Sequence
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSNSKL
Secondary Structure (PSIPRED)
ccEEEEEccEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHccEEEEEcccEEEEcccccccccccccHHHHHHHHHcHHHHHHHHHcccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEcccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEccccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHHcccEEEcccccEEEccccEccccccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHccccHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mctlekhgDVFVLTltgssdvdehrfgpsAIDSILSAIAKAKaeatpgsalittshgkffsNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAammdlpmptvaaVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSevdigatlPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLypdlcgvlglDIRAVVSNSKL
Flexible Loop (DISEMBL)
mctlekhgdVFVLTLtgssdvdehRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAkvgsatarrDVLLRakkikgeealRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSNSKL
Low Complexity Region (SEG)
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDlawaqaagsragarerllYMVESFRPVVAAMMDLPMPTvaavnghaaaagFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSNSKL
Disordered region (IsUnstruct)
*******GDVFVLTLTGSSDVD*HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAY************LAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVV*****
Disordered Region (DISOPRED)
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAG***GARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRA*V**S**
Disordered Region (DISEMBL)
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL*********AGEVYAEIRKSLYPDLCGVLGLDIRAVVSNSKL
Disordered Region (DISPRO)
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSNS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSNSKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	243	2.2.26 [Sep-21-2011]
Q3MIE0	300	Enoyl-CoA hydratase domai	yes	no	0.773	0.626	0.309	1e-09
A9MR28	261	Carnitinyl-CoA dehydratas	N/A	no	0.588	0.547	0.318	5e-09
A8ALR7	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.312	9e-09
P59395	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.306	2e-08
Q8Z9L5	261	Carnitinyl-CoA dehydratas	N/A	no	0.588	0.547	0.306	2e-08
Q9D7J9	300	Enoyl-CoA hydratase domai	yes	no	0.761	0.616	0.299	2e-08
Q8ZRX5	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.306	2e-08
B4TWR3	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.306	2e-08
B4TIG9	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.306	2e-08
B4T6J5	261	Carnitinyl-CoA dehydratas	yes	no	0.588	0.547	0.306	3e-08

>sp|Q3MIE0|ECHD3_RAT Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Rattus norvegicus GN=Echdc3 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 92/210 (43%), Gaps = 22/210 (10%)

Query: 42  KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---D 98
           +AE+     +I ++ G  FS+G DL     A  R        Y  E F+     MM   +
Sbjct: 85  EAESEDLKVIIISAEGPVFSSGHDLKELTGAQGRD-------YHTEVFQTCSEVMMLIRN 137

Query: 99  LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
            P+P VA VNG A AAG  L  S D  +   DK       V++G      F +     +G
Sbjct: 138 HPVPIVAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVG-----LFCSTPAVALG 191

Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA--GRKWAGE 213
            A  R+   ++L   + I  +EALR GL+      EEQ+ E + R+AK++A   R     
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEEEATRIAKKIASLSRSVVAL 250

Query: 214 VYAEIRKSLYPDLCGVLGLDIRAVVSNSKL 243
             A   K L  DL     L  +A+V N  L
Sbjct: 251 GKATFYKQLPQDLSTAYFLASQAMVDNLTL 280

Rattus norvegicus (taxid: 10116)

>sp|A9MR28|CAID_SALAR Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1

 Score = 61.6 bits (148), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT +  KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTELFDLNKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D++I   D     + E  +G  +PD    L   K+       D
Sbjct: 100 AVNGYAFGGGFELALAADFIIC-ADHASFALPEAKLG-IVPDSGGVLRLPKILPPAIVND 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S  ++ +++  LA+Q+
Sbjct: 158 MVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) (taxid: 41514)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|A8ALR7|CAID_CITK8 Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1

 Score = 60.5 bits (145), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   D     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +L+  +++  EEALR G+V     S++ + +++  LA+Q+
Sbjct: 158 MLMTGRRMDAEEALRWGIVNRVV-SQQALMDSARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) (taxid: 290338)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|P59395|CAID_SHIFL Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 79/160 (49%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT +  KFFS G DL  A A G    A          F P     +  + +L  P +A
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFNLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   D     + E  +G  +PD    L   K+   T   +
Sbjct: 100 AVNGYAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKILPPTIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ + +  LA+Q+
Sbjct: 158 MVMTGRRMGAEEALRWGIVNRVV-SQAELMDNARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Shigella flexneri (taxid: 623)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8Z9L5|CAID_SALTI Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   +     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ E++  LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGIVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella typhi (taxid: 90370)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9D7J9|ECHD3_MOUSE Enoyl-CoA hydratase domain-containing protein 3, mitochondrial OS=Mus musculus GN=Echdc3 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 91/207 (43%), Gaps = 22/207 (10%)

Query: 42  KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---D 98
           +AE+     +I ++ G  FS+G DL     A  R        Y  E F+     MM   +
Sbjct: 85  EAESEDLKVIIISAEGPVFSSGHDLKELTDAQGRD-------YHAEVFQTCSEVMMLIRN 137

Query: 99  LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
            P+P +A VNG A AAG  L  S D  +   DK       V++G      F +     +G
Sbjct: 138 HPVPILAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVG-----LFCSTPAVALG 191

Query: 159 SATARR---DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA--GRKWAGE 213
            A  R+   ++L   + I  +EALR GL+      EEQ+   +MR+AK+++   R     
Sbjct: 192 RAVPRKVALEMLFTGEPISAQEALRHGLISKVV-PEEQLEAETMRIAKKISSLSRSVVAL 250

Query: 214 VYAEIRKSLYPDLCGVLGLDIRAVVSN 240
             A   K L  DL     L  +A+V N
Sbjct: 251 GKATFYKQLPQDLRTAYFLASQAMVDN 277

Mus musculus (taxid: 10090)

>sp|Q8ZRX5|CAID_SALTY Carnitinyl-CoA dehydratase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=caiD PE=3 SV=3

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   +     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ E++  LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4TWR3|CAID_SALSV Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   +     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ E++  LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella schwarzengrund (strain CVM19633) (taxid: 439843)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4TIG9|CAID_SALHS Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   +     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ E++  LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella heidelberg (strain SL476) (taxid: 454169)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|B4T6J5|CAID_SALNS Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV----VAAMMDLPMPTVA 105
           A+IT    KFFS G DL  A A G    A          F P     +  + DL  P +A
Sbjct: 50  AIITGGGEKFFSAGWDLK-AAAEGEAPDA---------DFGPGGFAGLTEIFDLDKPVIA 99

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD 165
           AVNG+A   GF LAL+ D+++   +     + E  +G  +PD    L   K+       +
Sbjct: 100 AVNGYAFGGGFELALAADFIVCAENAS-FALPEAKLG-IVPDSGGVLRLPKLLPPAIVNE 157

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           +++  +++  EEALR G+V     S+ ++ E++  LA+Q+
Sbjct: 158 MVMTGRRMSAEEALRWGVVNRVV-SQSELMESARELAQQL 196

Catalyzes the reversible dehydration of L-carnitinyl-CoA to crotonobetainyl-CoA.

Salmonella newport (strain SL254) (taxid: 423368)

EC: 4

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
297800796	240	enoyl-CoA hydratase/isomerase family pro	0.983	0.995	0.659	2e-83
224111012	238	predicted protein [Populus trichocarpa]	0.946	0.966	0.696	6e-83
225433001	238	PREDICTED: carnitinyl-CoA dehydratase-li	0.967	0.987	0.635	3e-82
225432999	238	PREDICTED: carnitinyl-CoA dehydratase-li	0.967	0.987	0.623	8e-82
147858838	238	hypothetical protein VITISV_036844 [Viti	0.967	0.987	0.619	1e-80
15236499	238	3-hydroxyacyl-CoA dehydratase 1 [Arabido	0.971	0.991	0.611	2e-80
15236498	240	indole-3-butyric acid response 10 [Arabi	0.983	0.995	0.659	3e-80
297800794	238	enoyl-CoA hydratase/isomerase family pro	0.934	0.953	0.635	7e-80
21555734	240	carnitine racemase like protein [Arabido	0.983	0.995	0.655	2e-79
449432584	239	PREDICTED: fatty acid oxidation complex	0.983	1.0	0.613	3e-77

>gi|297800796|ref|XP_002868282.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314118|gb|EFH44541.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (806), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 161/244 (65%), Positives = 202/244 (82%), Gaps = 5/244 (2%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK GD+F+LTLTG     EHRF P  I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQ AGS+ GA  RL  MVESF+PVVAA++DLPMPT+AA+NGHAAAAG  LA+
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLMLAI 117

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIG ++PDYF+AL RAK+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           +G+V  AAYDSEE V EAS+RL +++A +KW+GEVYA IRKSLYP+LCG+LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVEASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLEAR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111012|ref|XP_002315715.1| predicted protein [Populus trichocarpa] gi|222864755|gb|EEF01886.1| predicted protein [Populus trichocarpa]

 Score =  312 bits (800), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 163/234 (69%), Positives = 197/234 (84%), Gaps = 4/234 (1%)

Query: 1   MCTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKF 59
           MCTLEK G ++F+LTLTG+   DEHR  P+ IDSILSA+ +AK++AT GS LITTS GKF
Sbjct: 1   MCTLEKTGTNIFILTLTGA---DEHRLNPTLIDSILSALRQAKSQATKGSVLITTSRGKF 57

Query: 60  FSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLA 119
           FSNG DLAWAQAA S+  A ERL +MVE  +PVVA ++ LPMPT+AAVNGHAAAAG  LA
Sbjct: 58  FSNGFDLAWAQAASSKPKATERLHHMVELLKPVVAELISLPMPTIAAVNGHAAAAGLILA 117

Query: 120 LSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL 179
           LSHDY+ M+RD+GVLYMSEVDIG T PDYFTALFRAKVGS +  RDVLLR  K+KG+EA+
Sbjct: 118 LSHDYIHMKRDRGVLYMSEVDIGLTFPDYFTALFRAKVGSPSVLRDVLLRGAKVKGDEAV 177

Query: 180 RMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLD 233
           R G+V+AA+D+EE+++EA+MRL +Q+A RKW GE+Y EIRKSLYP+LCGVLGLD
Sbjct: 178 RRGIVEAAHDNEERLSEATMRLGEQLASRKWLGEIYKEIRKSLYPELCGVLGLD 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433001|ref|XP_002284547.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/239 (63%), Positives = 200/239 (83%), Gaps = 4/239 (1%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLE+ G++F LTLTG    +EHR GPS  DSI SA+A+ K++ATPGSALITT+ GKFF
Sbjct: 1   MCTLEQRGNLFFLTLTGD---NEHRLGPSLFDSIRSALAQVKSQATPGSALITTAQGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNGLDLAWAQAAGS +  R+RL ++++ F+P+VA ++ LPMPT+AAV+GHAAAAGF LA+
Sbjct: 58  SNGLDLAWAQAAGS-SSFRDRLSHLLDCFKPIVADLLSLPMPTIAAVSGHAAAAGFMLAI 116

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIG T PDYF A+ ++K+    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFPDYFMAMMKSKISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           MG+V +A+DS E   EA++RLA+Q++GRKW GEVYAEIRK+++P++CG+LGL  RAVV+
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432999|ref|XP_002284541.1| PREDICTED: carnitinyl-CoA dehydratase-like [Vitis vinifera]

 Score =  309 bits (791), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 149/239 (62%), Positives = 201/239 (84%), Gaps = 4/239 (1%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLE+ G++F+L LTG    +EHR GP+ +DSI SA+A+ K++ATPGSALITT+HGKFF
Sbjct: 1   MCTLEQRGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNGLDL WAQAAGS +G R+RL ++V +F+P++A ++ LPMPT+AAV+GHAAAAGF LA+
Sbjct: 58  SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFMLAI 116

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIG T  DYF A+ ++++    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSRISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           MG+V +A+DS E   EA++RLA+Q++GRKW GEVYAEIRK+++P++CG+LGL  RAVV+
Sbjct: 177 MGIVDSAHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147858838|emb|CAN82902.1| hypothetical protein VITISV_036844 [Vitis vinifera]

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/239 (61%), Positives = 199/239 (83%), Gaps = 4/239 (1%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLE+ G++F+L LTG    +EHR GP+ +DSI SA+A+ K++ATPGSALITT+H KFF
Sbjct: 1   MCTLEERGNLFLLILTGD---NEHRLGPTLVDSIRSALAQVKSQATPGSALITTAHDKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNGLDL WAQAAGS +G R+RL ++V +F+P++A ++ LPMPT+AAV+GHAAAAGF LA+
Sbjct: 58  SNGLDLPWAQAAGS-SGFRDRLNHLVNNFKPIIADLLSLPMPTIAAVSGHAAAAGFRLAI 116

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+M+ D+ VLYMSE+DIG T  DYF A+ ++K+    ARRDV+LRAKK+K EEA+R
Sbjct: 117 SHDYVLMKNDRSVLYMSELDIGLTFADYFMAMLKSKISDPAARRDVMLRAKKVKAEEAVR 176

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           MG+V + +DS E   EA++RLA+Q++GRKW GEVYAEIRK+++P++CG+LGL  RAVV+
Sbjct: 177 MGIVDSTHDSAESTVEAAVRLAEQLSGRKWNGEVYAEIRKAMHPEVCGLLGLSHRAVVA 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236499|ref|NP_193180.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana] gi|2244800|emb|CAB10223.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268150|emb|CAB78486.1| carnitine racemase like protein [Arabidopsis thaliana] gi|18252927|gb|AAL62390.1| carnitine racemase like protein [Arabidopsis thaliana] gi|30023700|gb|AAP13383.1| At4g14440 [Arabidopsis thaliana] gi|332658045|gb|AEE83445.1| 3-hydroxyacyl-CoA dehydratase 1 [Arabidopsis thaliana]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/242 (61%), Positives = 190/242 (78%), Gaps = 6/242 (2%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK GD+F+LTLTG    DEHRF P  I S+LS + +AK+++T GS LITT HGKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQ+AG   GA +R+  MV+SF+PV+AA++DLPMPT+AA+NGHAAA+G   AL
Sbjct: 58  SNGFDLAWAQSAGH--GAIKRMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIG  +PDYF+AL  AKVGS  ARR++LL  KK+KGEEA+ 
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175

Query: 181 MGLV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           +G+V  AA+DS E V EA++ L + +A +KW GEVYA IRKSLYP+LC ++ L    + +
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDLTANNLAT 235

Query: 240 NS 241
           ++
Sbjct: 236 HN 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236498|ref|NP_193179.1| indole-3-butyric acid response 10 [Arabidopsis thaliana] gi|14190481|gb|AAK55721.1|AF380640_1 AT4g14430/dl3255c [Arabidopsis thaliana] gi|2244799|emb|CAB10222.1| carnitine racemase like protein [Arabidopsis thaliana] gi|7268149|emb|CAB78485.1| carnitine racemase like protein [Arabidopsis thaliana] gi|15810107|gb|AAL06979.1| AT4g14430/dl3255c [Arabidopsis thaliana] gi|110738734|dbj|BAF01291.1| carnitine racemase like protein [Arabidopsis thaliana] gi|332658044|gb|AEE83444.1| indole-3-butyric acid response 10 [Arabidopsis thaliana]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 161/244 (65%), Positives = 201/244 (82%), Gaps = 5/244 (2%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK GD+F+LTLTG     EHRF P  I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQ AGS+ GA  RL  MVESF+PVVAA++DLPMPT+AA+NGHAAAAG  LAL
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIG ++PDYF+AL RAK+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           +G+V  AAYDSEE V  AS+RL +++A +KW+GEVYA IRKSLYP+LCG+LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800794|ref|XP_002868281.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297314117|gb|EFH44540.1| enoyl-CoA hydratase/isomerase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (774), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 148/233 (63%), Positives = 184/233 (78%), Gaps = 6/233 (2%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK GD+F LTLTG    DEHRF P  I S+LS + +AK+++T GS LITT HG FF
Sbjct: 1   MCTLEKRGDLFHLTLTGD---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGNFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQ+A  R GA ER+  MV+SF+PV+AA++DLPMPT+AA+NGHAAA+G   AL
Sbjct: 58  SNGFDLAWAQSA--RHGAIERMHQMVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIG  +PDYF+AL  AKVGS  ARR++LL  KK+KGE+A+ 
Sbjct: 116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEDAVA 175

Query: 181 MGLV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGL 232
           +G+V  AA+DS E V EA++ L + +A +KW GEVYA IRKSLYP+LC +L L
Sbjct: 176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYASIRKSLYPELCRMLEL 228

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21555734|gb|AAM63923.1| carnitine racemase like protein [Arabidopsis thaliana]

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 160/244 (65%), Positives = 200/244 (81%), Gaps = 5/244 (2%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK GD+F+LTLTG     EHRF P  I +ILS + +AK+++T GS LITT++GKFF
Sbjct: 1   MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQ AGS+ GA  RL  MVESF+PVVAA++DLPMPT+AA+NGHAAAAG  LAL
Sbjct: 58  SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV MR+D+GVLYMSEVDIG ++PDYF+AL RAK+G++ ARR++LL  KKI+GEEA+ 
Sbjct: 118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query: 181 MGLV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
           +G+V  AAYDSEE V  AS+RL +++A +KW+GEVYA IRKSLYP+LC +LGL+ R V +
Sbjct: 178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCEILGLETR-VFA 236

Query: 240 NSKL 243
             KL
Sbjct: 237 TPKL 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432584|ref|XP_004134079.1| PREDICTED: fatty acid oxidation complex subunit alpha-like [Cucumis sativus]

 Score =  294 bits (752), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 149/243 (61%), Positives = 194/243 (79%), Gaps = 4/243 (1%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCT+EK G+ F+LTLTG    D+HR  PS I+SIL A+++ KA+A+P S LITTSHGKFF
Sbjct: 1   MCTVEKRGNFFILTLTGD---DDHRLSPSLINSILKALSQVKAQASPASVLITTSHGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DL WA +AGS + AR RL +++E F+ VVA ++ LPMPT+AA+ GHAAAAGFTLAL
Sbjct: 58  SNGFDLPWALSAGSVSAARHRLNHLIEIFKSVVAELISLPMPTIAAITGHAAAAGFTLAL 117

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDY+IMR D+GVLYM E+D+G TLPDYF ALF++K+GS+ A RD++LR  K++GE A+R
Sbjct: 118 SHDYLIMRSDRGVLYMRELDLGLTLPDYFMALFKSKIGSSLAMRDLILRGMKVRGEAAVR 177

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSN 240
           MG+V +A+D E+ V  A++RL +Q+AGR W GEVYAEIRKSLYP++  VLGL  +  +S 
Sbjct: 178 MGIVDSAHDGEDSVVNAAVRLGEQLAGRNWDGEVYAEIRKSLYPEVSEVLGLPGKP-ISI 236

Query: 241 SKL 243
           SKL
Sbjct: 237 SKL 239

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	243
TAIR|locus:2129730	240	IBR10 "indole-3-butyric acid r	0.983	0.995	0.569	1e-68
TAIR|locus:2129740	238	HCD1 "3-hydroxyacyl-CoA dehydr	0.934	0.953	0.553	3e-62
TAIR|locus:2034178	240	ECI1 ""delta(3), delta(2)-enoy	0.876	0.887	0.408	2.9e-39
ASPGD|ASPL0000001974	244	AN6767 [Emericella nidulans (t	0.827	0.823	0.298	1.1e-14
DICTYBASE|DDB_G0282341	249	DDB_G0282341 "enoyl-CoA hydrat	0.946	0.923	0.271	4.9e-14
DICTYBASE|DDB_G0289147	267	DDB_G0289147 "enoyl-CoA hydrat	0.728	0.662	0.225	2.9e-05

TAIR|locus:2129730 IBR10 "indole-3-butyric acid response 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 139/244 (56%), Positives = 176/244 (72%)

Query:     1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
             MCTLEK GD+F+LTLTG     EHRF P  I +ILS + +AK+++T GS LITT++GKFF
Sbjct:     1 MCTLEKRGDLFLLTLTGDG---EHRFHPDTIATILSLLEQAKSQSTRGSILITTANGKFF 57

Query:    61 SNGLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLAL 120
             SNG D                   MVESF+PVVAA++DLPMPT              LAL
Sbjct:    58 SNGFDLAWAQTAGSKTGAANRLHQMVESFKPVVAALLDLPMPTIAALNGHAAAAGLILAL 117

Query:   121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
             SHDYV MR+D+GVLYMSEVDIG ++PDYF+AL RAK+G++ ARR++LL  KKI+GEEA+ 
Sbjct:   118 SHDYVFMRKDRGVLYMSEVDIGLSMPDYFSALVRAKIGTSAARRELLLSGKKIRGEEAVG 177

Query:   181 MGLVQ-AAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVS 239
             +G+V  AAYDSEE V  AS+RL +++A +KW+GEVYA IRKSLYP+LCG+LGL+ R V +
Sbjct:   178 LGIVDSAAYDSEEGVVVASVRLGEKLAAKKWSGEVYASIRKSLYPELCGILGLETR-VFA 236

Query:   240 NSKL 243
               KL
Sbjct:   237 TPKL 240

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI;IDA

GO:0009062 "fatty acid catabolic process" evidence=RCA;IMP

GO:0080024 "indolebutyric acid metabolic process" evidence=IMP

GO:0080026 "response to indolebutyric acid stimulus" evidence=IMP

GO:0048767 "root hair elongation" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

TAIR|locus:2129740 HCD1 "3-hydroxyacyl-CoA dehydratase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 129/233 (55%), Positives = 161/233 (69%)

Query:     1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
             MCTLEK GD+F+LTLTG    DEHRF P  I S+LS + +AK+++T GS LITT HGKFF
Sbjct:     1 MCTLEKRGDLFLLTLTGE---DEHRFHPDTIASVLSLLEQAKSQSTKGSVLITTGHGKFF 57

Query:    61 SNGLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLAL 120
             SNG D                   MV+SF+PV+AA++DLPMPT               AL
Sbjct:    58 SNGFDLAWAQSAGHGAIKRMHQ--MVKSFKPVLAALLDLPMPTIAALNGHAAASGLMFAL 115

Query:   121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
             SHDYV MR+D+GVLYMSEVDIG  +PDYF+AL  AKVGS  ARR++LL  KK+KGEEA+ 
Sbjct:   116 SHDYVFMRKDRGVLYMSEVDIGLPVPDYFSALVVAKVGSGIARRELLLSGKKLKGEEAVA 175

Query:   181 MGLVQ-AAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGL 232
             +G+V  AA+DS E V EA++ L + +A +KW GEVYA IRKSLYP+LC ++ L
Sbjct:   176 LGIVDSAAHDSAEGVVEATVSLGESLAAKKWNGEVYATIRKSLYPELCRMVDL 228

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0008809 "carnitine racemase activity" evidence=ISS

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009062 "fatty acid catabolic process" evidence=IMP

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2034178 ECI1 ""delta(3), delta(2)-enoyl CoA isomerase 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 91/223 (40%), Positives = 130/223 (58%)

Query:     1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEAT-PGSALITTSHGKF 59
             MC+LEK   +F+L LTG     EHR  P+ +DS+ S I + +++ +   S LITTS GKF
Sbjct:     1 MCSLEKRDRLFILKLTGDG---EHRLNPTLLDSLRSTINQIRSDPSFSQSVLITTSDGKF 57

Query:    60 FSNGLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLA 119
             FSNG D                   M    R +VA ++ LPMPT              LA
Sbjct:    58 FSNGYDLALAESNPSLSVV------MDAKLRSLVADLISLPMPTIAAVTGHASAAGCILA 111

Query:   120 LSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL 179
             +SHDYV+MRRD+G LYMSE+DI   +P +F A+ R K+GS  ARRDV+L A K+  +  +
Sbjct:   112 MSHDYVLMRRDRGFLYMSELDIELIVPAWFMAVIRGKIGSPAARRDVMLTAAKVTADVGV 171

Query:   180 RMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSL 222
             +MG+V +AY S  +  EA+++L +++  R   G VY ++R+SL
Sbjct:   172 KMGIVDSAYGSAAETVEAAIKLGEEIVQRGGDGHVYGKMRESL 214

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0008809 "carnitine racemase activity" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0004165 "dodecenoyl-CoA delta-isomerase activity" evidence=IGI

GO:0009062 "fatty acid catabolic process" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

ASPGD|ASPL0000001974 AN6767 [Emericella nidulans (taxid:162425)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 68/228 (29%), Positives = 102/228 (44%)

Query:     3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGS--ALITT-SHGKF 59
             TL ++G+VF++T+       E+R        ++ A    +    P S  A+IT  S  KF
Sbjct:    11 TLSRYGNVFIITM---QKPPENRLNTWYCQELIRAFRTVEKILGPDSEGAVITRGSDAKF 67

Query:    60 FSNGLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLA 119
             +  GL+                     + F P+V  ++D P PT               A
Sbjct:    68 WCTGLELDESDTNPFANS---------DGFYPLVHTVLDFPFPTIALLTGHTFGGACPFA 118

Query:   120 LSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL 179
             L+HDY IM   +G   M  V++G    D   +L R K+    A + +LL A +  GEEAL
Sbjct:   119 LAHDYRIMNSKRGFFSMPPVNLGLHF-DGIGSLPRLKLRPDIAAK-MLLEAHRWTGEEAL 176

Query:   180 RMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGE----VYAEIRKSLY 223
             R G+V A  D +E      + +A +M GRKWA +    VYA +R  L+
Sbjct:   177 RDGIVHAIADPDEM-----LDVALEM-GRKWAPKAKMGVYAALRAELW 218

GO:0005575 "cellular_component" evidence=ND

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

DICTYBASE|DDB_G0282341 DDB_G0282341 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 66/243 (27%), Positives = 110/243 (45%)

Query:     4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSN 62
             LE + D+F+LTL   +D +E+RF    +     ++   ++     S LITTS   KF+S 
Sbjct:    17 LESNEDIFLLTL---ND-NENRFNDDNLGHFHKSLDYVES-CENASCLITTSISPKFYSL 71

Query:    63 GLDXXXXXXXXXXXXXXXXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSH 122
             GLD                    V  F  ++  ++  P+PT               +++H
Sbjct:    72 GLDLDWALPRGAKNFQE-----FVFRFHALLQRILVFPIPTISCINGHSFAGGAMFSMAH 126

Query:   123 DYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
             DY IM+ DKG   + E+DI   L     A+ + K+ ++   RDV+L  K+  G+EA ++ 
Sbjct:   127 DYRIMKSDKGFFCLPEIDIHIPLTPGMNAILQCKITNSNIFRDVVLTGKRFGGKEAEKLQ 186

Query:   183 LV-QAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG-VLGLDIRAVVSN 240
             LV ++  D  E+  E +  L  +   R   G +  E+ K+   +L    +G   R  +  
Sbjct:   187 LVDKSCTDILEKSVELAELLHTKGKDRITFGSLKEEMYKNASKELLEKTIGFASRLKLFE 246

Query:   241 SKL 243
             SKL
Sbjct:   247 SKL 249

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

DICTYBASE|DDB_G0289147 DDB_G0289147 "enoyl-CoA hydratase/isomerase family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 119 (46.9 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 42/186 (22%), Positives = 77/186 (41%)

Query:    22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTS--HGKFFSNGLDXXXXXXXXXXXXXX 79
             +E+RF P  +  I  A+   ++       LITT     K++S GLD              
Sbjct:    51 NENRFNPINLKYINQALDYIES-IEDCCCLITTGTDESKYYSLGLDLEWVKPRGKSSFFN 109

Query:    80 XXXXYMVESFRPVVAAMMDLPMPTXXXXXXXXXXXXFTLALSHDYVIMRRDKGVLYMSEV 139
                   V     ++  ++   +PT               +L+HDY +M   KG + ++ +
Sbjct:   110 LLYDLCV-----LLERILTFSIPTISCINGHSYAGGAIFSLAHDYRVMNDSKGFICVNAI 164

Query:   140 DIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM 199
             D    LP       + K+ + +  RD +L  K+  G +A ++ LV     +   + E S+
Sbjct:   165 DNNIPLPPGLIDTMKCKINNPSLYRDFVLMGKRYGGLDAEKLQLVDRT-SNPSTILEESI 223

Query:   200 RLAKQM 205
             +LAK++
Sbjct:   224 KLAKEI 229


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      243       213   0.00084  112 3  11 22  0.48    32
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  144 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.15u 0.09s 16.24t   Elapsed:  00:00:01
  Total cpu time:  16.16u 0.09s 16.25t   Elapsed:  00:00:01
  Start:  Thu May  9 18:33:39 2013   End:  Thu May  9 18:33:40 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	scaffold_703164.1	annotation not avaliable (240 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__491__AT5G43280.1	annotation not avaliable (276 aa)			•				•		0.539
	Al_scaffold_0007_2619	annotation not avaliable (265 aa)			•				•		0.476

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	243
PLN02267	239	PLN02267, PLN02267, enoyl-CoA hydratase/isomerase	1e-134
cd06558	195	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme	7e-39
COG1024	257	COG1024, CaiD, Enoyl-CoA hydratase/carnithine race	4e-26
pfam00378	245	pfam00378, ECH, Enoyl-CoA hydratase/isomerase fami	8e-22
PRK08140	262	PRK08140, PRK08140, enoyl-CoA hydratase; Provision	2e-12
PRK05981	266	PRK05981, PRK05981, enoyl-CoA hydratase; Provision	2e-12
PRK06495	257	PRK06495, PRK06495, enoyl-CoA hydratase; Provision	5e-12
PRK06688	259	PRK06688, PRK06688, enoyl-CoA hydratase; Provision	1e-11
PRK06213	229	PRK06213, PRK06213, enoyl-CoA hydratase; Provision	1e-11
PRK07659	260	PRK07659, PRK07659, enoyl-CoA hydratase; Provision	9e-11
TIGR02280	256	TIGR02280, PaaB1, phenylacetate degradation probab	1e-10
PRK07110	249	PRK07110, PRK07110, polyketide biosynthesis enoyl-	3e-10
PRK06142	272	PRK06142, PRK06142, enoyl-CoA hydratase; Provision	1e-09
PRK07511	260	PRK07511, PRK07511, enoyl-CoA hydratase; Provision	1e-09
PRK08272	302	PRK08272, PRK08272, enoyl-CoA hydratase; Provision	5e-09
PRK07327	268	PRK07327, PRK07327, enoyl-CoA hydratase; Provision	7e-09
TIGR03210	256	TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hyd	3e-08
PRK07658	257	PRK07658, PRK07658, enoyl-CoA hydratase; Provision	4e-08
TIGR02437	714	TIGR02437, FadB, fatty oxidation complex, alpha su	1e-07
PRK09076	258	PRK09076, PRK09076, enoyl-CoA hydratase; Provision	2e-07
PRK03580	261	PRK03580, PRK03580, carnitinyl-CoA dehydratase; Pr	3e-07
PRK05870	249	PRK05870, PRK05870, enoyl-CoA hydratase; Provision	4e-07
TIGR01929	259	TIGR01929, menB, naphthoate synthase (dihydroxynap	5e-07
TIGR03189	251	TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecar	1e-06
PRK06072	248	PRK06072, PRK06072, enoyl-CoA hydratase; Provision	1e-06
PRK07509	262	PRK07509, PRK07509, enoyl-CoA hydratase; Provision	1e-06
PRK07468	262	PRK07468, PRK07468, enoyl-CoA hydratase; Provision	2e-06
TIGR02440	699	TIGR02440, FadJ, fatty oxidation complex, alpha su	3e-06
PRK05809	260	PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydrata	3e-06
PRK06494	259	PRK06494, PRK06494, enoyl-CoA hydratase; Provision	4e-06
PRK06144	262	PRK06144, PRK06144, enoyl-CoA hydratase; Provision	5e-06
PRK05674	265	PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydr	6e-06
PRK05864	276	PRK05864, PRK05864, enoyl-CoA hydratase; Provision	7e-06
PRK07260	255	PRK07260, PRK07260, enoyl-CoA hydratase; Provision	1e-05
PRK07657	260	PRK07657, PRK07657, enoyl-CoA hydratase; Provision	1e-05
PRK08321	302	PRK08321, PRK08321, naphthoate synthase; Validated	1e-05
PLN02664	275	PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-d	2e-05
PRK09245	266	PRK09245, PRK09245, enoyl-CoA hydratase; Provision	2e-05
PRK06210	272	PRK06210, PRK06210, enoyl-CoA hydratase; Provision	2e-05
PRK07827	260	PRK07827, PRK07827, enoyl-CoA hydratase; Provision	2e-05
TIGR02441	737	TIGR02441, fa_ox_alpha_mit, fatty acid oxidation c	2e-05
PRK11730	715	PRK11730, fadB, multifunctional fatty acid oxidati	2e-05
PLN03214	278	PLN03214, PLN03214, probable enoyl-CoA hydratase/i	3e-05
PRK08138	261	PRK08138, PRK08138, enoyl-CoA hydratase; Provision	4e-05
PRK08258	277	PRK08258, PRK08258, enoyl-CoA hydratase; Provision	4e-05
PRK06190	258	PRK06190, PRK06190, enoyl-CoA hydratase; Provision	5e-05
PRK06127	269	PRK06127, PRK06127, enoyl-CoA hydratase; Provision	9e-05
PLN02600	251	PLN02600, PLN02600, enoyl-CoA hydratase	1e-04
PRK07854	243	PRK07854, PRK07854, enoyl-CoA hydratase; Provision	1e-04
PRK05869	222	PRK05869, PRK05869, enoyl-CoA hydratase; Validated	2e-04
PLN02888	265	PLN02888, PLN02888, enoyl-CoA hydratase	4e-04
PRK08139	266	PRK08139, PRK08139, enoyl-CoA hydratase; Validated	4e-04
PRK08260	296	PRK08260, PRK08260, enoyl-CoA hydratase; Provision	5e-04
PRK05995	262	PRK05995, PRK05995, enoyl-CoA hydratase; Provision	6e-04
PRK09674	255	PRK09674, PRK09674, enoyl-CoA hydratase-isomerase;	0.001
COG0447	282	COG0447, MenB, Dihydroxynaphthoic acid synthase [C	0.001
PRK11154	708	PRK11154, fadJ, multifunctional fatty acid oxidati	0.001
PRK06563	255	PRK06563, PRK06563, enoyl-CoA hydratase; Provision	0.004

>gnl|CDD|215151 PLN02267, PLN02267, enoyl-CoA hydratase/isomerase family protein

 Score =  376 bits (967), Expect = e-134
 Identities = 157/245 (64%), Positives = 189/245 (77%), Gaps = 8/245 (3%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           MCTLEK G++F+LTLTG     EHR  P+ IDSI SA+ + K++ATPGS LITT+ GKFF
Sbjct: 1   MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFF 57

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           SNG DLAWAQAAGS   A  RL  MV   RP+VA ++ LPMPT+AAV GHA+AAGF LAL
Sbjct: 58  SNGFDLAWAQAAGS---APSRLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILAL 114

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           SHDYV+MR+D+GVLYMSEVDIG  LPDYF AL RAK+GS  ARRDVLLRA K+  EEA+ 
Sbjct: 115 SHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIGSPAARRDVLLRAAKLTAEEAVE 174

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVVSN 240
           MG+V +A+DS E+  EA++RL +++A RKW GEVYA IRKSL P++CG LGLD     S+
Sbjct: 175 MGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEESH 234

Query: 241 --SKL 243
             SKL
Sbjct: 235 TTSKL 239

Length = 239

>gnl|CDD|119339 cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

 Score =  133 bits (337), Expect = 7e-39
 Identities = 59/204 (28%), Positives = 91/204 (44%), Gaps = 9/204 (4%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
             +E+ G V  +TL        +      +D + +A+ +A+A+      ++ T  GK F 
Sbjct: 1   VLVERDGGVATITLNRPEKR--NALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFC 57

Query: 62  NGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS 121
            G DL    A              +   + ++ A++ LP P +AAVNG A   G  LAL+
Sbjct: 58  AGADLKELAALSDAGEEARA---FIRELQELLRALLRLPKPVIAAVNGAALGGGLELALA 114

Query: 122 HDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRM 181
            D  I   D     + EV +G       T      VG A AR  +LL  ++I  EEAL +
Sbjct: 115 CDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVGPARARE-LLLTGRRISAEEALEL 172

Query: 182 GLVQAAYDSEEQVAEASMRLAKQM 205
           GLV      EE +A A + LA+++
Sbjct: 173 GLVDEVVPDEELLAAA-LELARRL 195

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole. Length = 195

>gnl|CDD|223955 COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

 Score =  101 bits (254), Expect = 4e-26
 Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 16/230 (6%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
            +E+   + V+TL    +  E         +D +  A+ +A+A+      ++ T  GK F
Sbjct: 8   LVEREDGIAVITL----NRPEKLNALNLEMLDELAEALDEAEADPD-VRVVVLTGAGKAF 62

Query: 61  SNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL 120
           S G DL    +      A   +    +  + ++ A+ DLP P +AAVNG+A   G  LAL
Sbjct: 63  SAGADLKELLSPEDGNAAENLM----QPGQDLLRALADLPKPVIAAVNGYALGGGLELAL 118

Query: 121 SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALR 180
           + D  I   D     + EV++G    D  T      +G   A+  +L   + I   EAL 
Sbjct: 119 ACDIRIAAEDA-KFGLPEVNLGLLPGDGGTQRLPRLLGRGRAKELLLT-GEPISAAEALE 176

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL 230
           +GLV       E++ E ++ LA+++A         A  ++ +   L   L
Sbjct: 177 LGLVDEVVPDAEELLERALELARRLAA---PPLALAATKRLVRAALEADL 223

Length = 257

>gnl|CDD|201191 pfam00378, ECH, Enoyl-CoA hydratase/isomerase family

 Score = 90.0 bits (224), Expect = 8e-22
 Identities = 50/176 (28%), Positives = 88/176 (50%), Gaps = 9/176 (5%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           +  ++ A+ K + + +   A++ T     FS G D+   +   +   A++         +
Sbjct: 27  LTELIQALEKLEQDPSVK-AIVLTGGPGAFSAGADI---KEMAAEPLAQQAQFS--LEAQ 80

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
            + + + DLP P +AAVNG+A   G  LAL+ DY I   D     + EV +G       T
Sbjct: 81  DLWSRLEDLPKPVIAAVNGYALGGGLELALACDYRIA-ADNAKFGLPEVKLGIIPGAGGT 139

Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
                 +G + A  ++LL  ++I+ +EAL+MGLV      EEQ+ E ++ LA+++A
Sbjct: 140 QRLPRIIGVSAA-LEMLLTGRRIRAQEALKMGLVDKV-VPEEQLVEEAIELAQRLA 193

This family contains a diverse set of enzymes including: Enoyl-CoA hydratase. Napthoate synthase. Carnitate racemase. 3-hydoxybutyryl-CoA dehydratase. Dodecanoyl-CoA delta-isomerase. Length = 245

>gnl|CDD|236163 PRK08140, PRK08140, enoyl-CoA hydratase; Provisional

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 62/187 (33%), Positives = 88/187 (47%), Gaps = 10/187 (5%)

Query: 39  AKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF-RPVVAAMM 97
           A  + E     AL+ T  G+ F  G DLA         GA   L   +E+F  P+V  + 
Sbjct: 39  ALDQVEDDGARALLLTGAGRGFCAGQDLADRDVTP--GGAMPDLGESIETFYNPLVRRLR 96

Query: 98  DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK 156
            LP+P +AAVNG AA AG  LAL+ D V+  R    +  + V IG  +PD   T      
Sbjct: 97  ALPLPVIAAVNGVAAGAGANLALACDIVLAARSASFI-QAFVKIG-LVPDSGGTWFLPRL 154

Query: 157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYA 216
           VG A A    LL  +K+  E+A + GL+    D      EA  +LA  +A +   G   A
Sbjct: 155 VGMARALGLALL-GEKLSAEQAEQWGLIWRVVDDAALADEA-QQLAAHLATQPTRG--LA 210

Query: 217 EIRKSLY 223
            I++++ 
Sbjct: 211 LIKQAMN 217

Length = 262

>gnl|CDD|235661 PRK05981, PRK05981, enoyl-CoA hydratase; Provisional

 Score = 64.8 bits (158), Expect = 2e-12
 Identities = 68/212 (32%), Positives = 96/212 (45%), Gaps = 20/212 (9%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSI------LSAIAKAKAEATPGSALITTSH 56
           TL+  G V +LTL              +ID +      L AI   KAE      L+ T  
Sbjct: 7   TLDFDGGVAILTLD-----HPEVMNAVSIDMLGGLAEALDAIEDGKAEV---RCLVLTGA 58

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVES-FRPVVAAMMDLPMPTVAAVNGHAAAAG 115
           G+ F  G +L    + G  + +       +E+ + P +  + +LP P V AVNG AA  G
Sbjct: 59  GRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVG 118

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDVLLRAKKIK 174
            + AL  D ++  R    L  +   IG  +PD   T L    VG A A    LL  +K+ 
Sbjct: 119 MSFALMGDLILCARSAYFL-QAFRRIG-LVPDGGSTWLLPRLVGKARAMELSLL-GEKLP 175

Query: 175 GEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
            E AL+ GLV    D  E +AEA M+LA ++A
Sbjct: 176 AETALQWGLVNRVVDDAELMAEA-MKLAHELA 206

Length = 266

>gnl|CDD|168580 PRK06495, PRK06495, enoyl-CoA hydratase; Provisional

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
            ++ T  GK F  G DL          G            R    A+ +   P +AAVNG
Sbjct: 50  VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRT---RECFHAIRECAKPVIAAVNG 106

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR 169
            A  AG  L  S D +I+  +  V  + E+D+G               G +  RR ++L 
Sbjct: 107 PALGAGLGLVASCD-IIVASENAVFGLPEIDVGLAGGGKHAMRL---FGHSLTRR-MMLT 161

Query: 170 AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
             ++   E  R G+++A    EE + EA M +A+++A
Sbjct: 162 GYRVPAAELYRRGVIEACLPPEELMPEA-MEIAREIA 197

Length = 257

>gnl|CDD|235852 PRK06688, PRK06688, enoyl-CoA hydratase; Provisional

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 13/159 (8%)

Query: 50  ALITTSHGKFFSNGLDL-AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN 108
            ++ T  G+ FS G D+  + +A          +       R  + A+  LP P VAAVN
Sbjct: 52  VVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPV------NR-FLRAIAALPKPVVAAVN 104

Query: 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDVL 167
           G A   G +LAL+ D V    +     +    +G   PD   +AL    +G A A   +L
Sbjct: 105 GPAVGVGVSLALACDLVYA-SESAKFSLPFAKLG-LCPDAGGSALLPRLIGRARAAE-ML 161

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
           L  + +  EEALR+GLV     + E  AEA    A ++A
Sbjct: 162 LLGEPLSAEEALRIGLVNRVVPAAELDAEAD-AQAAKLA 199

Length = 259

>gnl|CDD|235744 PRK06213, PRK06213, enoyl-CoA hydratase; Provisional

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 49/186 (26%), Positives = 86/186 (46%), Gaps = 19/186 (10%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDL----AWAQAAGSRAGARER 81
             P+ ID++ +A+ +A+ +    + ++ T     FS G DL    + AQAA         
Sbjct: 26  LSPAMIDALNAALDQAEDDR---AVVVITGQPGIFSGGFDLKVMTSGAQAA--------- 73

Query: 82  LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI 141
            + ++ +   +   ++  P P + A  GHA A G  L LS DY I       + ++EV I
Sbjct: 74  -IALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAI 132

Query: 142 GATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL 201
           G T+P     L R ++  +  +R V+  A+    EEA+  G +       EQ+   +   
Sbjct: 133 GMTMPHAAIELARDRLTPSAFQRAVIN-AEMFDPEEAVAAGFLDEVVPP-EQLLARAQAA 190

Query: 202 AKQMAG 207
           A+++AG
Sbjct: 191 ARELAG 196

Length = 229

>gnl|CDD|236073 PRK07659, PRK07659, enoyl-CoA hydratase; Provisional

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 38/153 (24%), Positives = 72/153 (47%), Gaps = 8/153 (5%)

Query: 42  KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM 101
           +   +    ++   +G+ FS G D+    ++       + ++  +     +V  +  +P 
Sbjct: 44  EVAESSAHIVVLRGNGRGFSAGGDIKMMLSSND-ESKFDGVMNTISE---IVVTLYTMPK 99

Query: 102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAK-VGSA 160
            T++A++G AA  G ++AL+ DYVI       L M+ + IG  +PD     F  K VG  
Sbjct: 100 LTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIG-LIPDGGGHFFLQKRVGEN 157

Query: 161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQ 193
            A++ ++   KK+   EAL +GL+      + Q
Sbjct: 158 KAKQ-IIWEGKKLSATEALDLGLIDEVIGGDFQ 189

Length = 260

>gnl|CDD|131333 TIGR02280, PaaB1, phenylacetate degradation probable enoyl-CoA hydratase paaB

 Score = 59.5 bits (144), Expect = 1e-10
 Identities = 52/168 (30%), Positives = 72/168 (42%), Gaps = 11/168 (6%)

Query: 42  KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF-RPVVAAMMDLP 100
           + E     AL+ T  G+ F  G DL+         G    L   +E+F  P+V  +  LP
Sbjct: 37  RVERDDARALMLTGAGRGFCAGQDLS---ERNPTPGGAPDLGRTIETFYNPLVRRLRALP 93

Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGS 159
           +P V AVNG AA AG  LAL+ D V+       +  +   IG  +PD   T      VG 
Sbjct: 94  LPVVCAVNGVAAGAGANLALACDIVLAAESARFI-QAFAKIG-LIPDSGGTWSLPRLVGR 151

Query: 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS---MRLAKQ 204
           A A    +L  +K+    A   GL+    D    + EA    + LA Q
Sbjct: 152 ARAMGLAML-GEKLDARTAASWGLIWQVVDDAALMDEAQALAVHLAAQ 198

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE). Length = 256

>gnl|CDD|235936 PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 24/192 (12%)

Query: 21  VDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE 80
           V+++ F     D +  A      +      +I T +  +F+ G             G +E
Sbjct: 24  VNKNAFSDELCDQLHEAFDTIAQDPRY-KVVILTGYPNYFATG-------------GTQE 69

Query: 81  RLLYMVESFR-----PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY 135
            LL +           + +  ++ P+P +AA+ GHA   G  L L  D V++ R+  V  
Sbjct: 70  GLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRES-VYT 128

Query: 136 MSEVDIGATLPDY-FTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQV 194
            + +  G T P    TA+   K+G A   +++LL A+  +G E  + G+         +V
Sbjct: 129 ANFMKYGFT-PGMGATAILPEKLGLALG-QEMLLTARYYRGAELKKRGVPFPVL-PRAEV 185

Query: 195 AEASMRLAKQMA 206
            E ++ LA+ +A
Sbjct: 186 LEKALELARSLA 197

Length = 249

>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 33/184 (17%)

Query: 43  AEATPG-SALITTSHGKFFSNGLDLA-----WAQ-AAGSRAGARERLLYMVESFRPVVAA 95
            +A P   A++ +  GK FS G+DL      + Q      A  R  L   +   +  + A
Sbjct: 45  LDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINA 104

Query: 96  MMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMS--EVDIGATLPDYFTALF 153
           + D   P +AAV G     G  L  + D   MR        S  EVD+G           
Sbjct: 105 VADCRKPVIAAVQGWCIGGGVDLISACD---MRYASADAKFSVREVDLGMV--------- 152

Query: 154 RAKVGSATAR----------RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAK 203
            A VGS   R          R++ L  + I   EA ++GLV   YD  + +  A+   A+
Sbjct: 153 -ADVGS-LQRLPRIIGDGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAR 210

Query: 204 QMAG 207
           ++A 
Sbjct: 211 EIAA 214

Length = 272

>gnl|CDD|181009 PRK07511, PRK07511, enoyl-CoA hydratase; Provisional

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 12/205 (5%)

Query: 6   KHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNG 63
           + G   VLTL+        R    P    + + A+  A+ + +   A++ T  G FF  G
Sbjct: 9   REGSTLVLTLSNP----GARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAG 63

Query: 64  LDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD 123
            +L   +   +RA         ++     + A+   P P +AAV G AA AGF+LAL+ D
Sbjct: 64  GNLN--RLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACD 121

Query: 124 YVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL 183
            ++  RD     M+ V +G T PD   + F A+        ++LL  K I  E    +G+
Sbjct: 122 LLVAARD-AKFVMAYVKVGLT-PDGGGSWFLARALPRQLATELLLEGKPISAERLHALGV 179

Query: 184 VQAAYDSEEQVAEASMRLAKQMAGR 208
           V    +  + +AEA + LA Q+A  
Sbjct: 180 VNRLAEPGQALAEA-LALADQLAAG 203

Length = 260

>gnl|CDD|236213 PRK08272, PRK08272, enoyl-CoA hydratase; Provisional

 Score = 55.0 bits (133), Expect = 5e-09
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)

Query: 85  MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT 144
           M+  F     ++     PTVA V+G+  A G  +AL  D VI   D  + Y      G  
Sbjct: 112 MMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADDAKIGYPPTRVWGVP 171

Query: 145 LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204
                T ++  ++G   A+R +L     I G +A   GL   A   EE + E + RL ++
Sbjct: 172 A----TGMWAYRLGPQRAKR-LLFTGDCITGAQAAEWGLAVEAVPPEE-LDERTERLVER 225

Query: 205 MAG 207
           +A 
Sbjct: 226 IAA 228

Length = 302

>gnl|CDD|235991 PRK07327, PRK07327, enoyl-CoA hydratase; Provisional

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 49  SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN 108
             ++    GK FS G DLA  +        R R+    E+ R +V  +++   P V+A++
Sbjct: 58  RVVLIRGEGKAFSAGGDLALVEEMADDFEVRARV--WREA-RDLVYNVINCDKPIVSAIH 114

Query: 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLL 168
           G A  AG   AL  D  I  +D  ++      +G    D+   ++    G A A+  +LL
Sbjct: 115 GPAVGAGLVAALLADISIAAKDARII-DGHTRLGVAAGDHAAIVWPLLCGMAKAKYYLLL 173

Query: 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
             + + GEEA R+GLV  A D +E + +A + +A+++A
Sbjct: 174 -CEPVSGEEAERIGLVSLAVDDDELLPKA-LEVAERLA 209

Length = 268

>gnl|CDD|132254 TIGR03210, badI, 2-ketocyclohexanecarboxyl-CoA hydrolase

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 18/189 (9%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
           F     D ++ A+  A  +   G  ++  +  K F  G D +           R  +   
Sbjct: 26  FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQS---THDGGYDGRGTIGLP 82

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL 145
           +E      +A+ D+P P +A V G+A   G  L    D  I   +K         +G+  
Sbjct: 83  MEELH---SAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIA-SEKAQFGQVGPKVGSVD 138

Query: 146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           P Y TAL    VG   A R++    ++   +EAL MGLV A    ++  AE         
Sbjct: 139 PGYGTALLARVVGEKKA-REIWYLCRRYTAQEALAMGLVNAVVPHDQLDAEV-------- 189

Query: 206 AGRKWAGEV 214
             +KW  E+
Sbjct: 190 --QKWCDEI 196

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen. Length = 256

>gnl|CDD|181070 PRK07658, PRK07658, enoyl-CoA hydratase; Provisional

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 35/173 (20%)

Query: 50  ALITTSHGKFFSNGLD------LAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103
            ++    G+FFS G D      +  A+ A   A   +     VE F            P 
Sbjct: 48  VVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKF----------SKPV 97

Query: 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIG--------ATLPDYFTALFRA 155
           +AA++G A   G  LA+S            L + E+++G          LP Y       
Sbjct: 98  IAAIHGAALGGGLELAMSCHIRFATESAK-LGLPELNLGLIPGFAGTQRLPRY------- 149

Query: 156 KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            VG A A  +++L ++ I G EAL+ GLV   +  EE + + + +LAK++AG+
Sbjct: 150 -VGKAKAL-EMMLTSEPITGAEALKWGLVNGVF-PEETLLDDAKKLAKKIAGK 199

Length = 257

>gnl|CDD|131490 TIGR02437, FadB, fatty oxidation complex, alpha subunit FadB

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 5/185 (2%)

Query: 24  HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL 83
           ++F  + + S+  A+   KA+++    +I TS    F  G D+   +  G  A     L+
Sbjct: 29  NKFDRATLASLDQALDAIKAQSSL-KGVILTSGKDAFIVGADIT--EFLGLFALPDAELI 85

Query: 84  YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGA 143
             +     +   + DLP+PTVAA+NG A   G    L+ D+ I      +  + E  +G 
Sbjct: 86  QWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDTAKI-GLPETKLG- 143

Query: 144 TLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAK 203
            +P +   +   +V  A    + +   K+ + E+AL++G V A   +++  A A   L  
Sbjct: 144 IMPGFGGTVRLPRVIGADNALEWIASGKENRAEDALKVGAVDAVVTADKLGAAALQLLKD 203

Query: 204 QMAGR 208
            + G+
Sbjct: 204 AINGK 208

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399 [Fatty acid and phospholipid metabolism, Degradation]. Length = 714

>gnl|CDD|236373 PRK09076, PRK09076, enoyl-CoA hydratase; Provisional

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 54/178 (30%), Positives = 77/178 (43%), Gaps = 47/178 (26%)

Query: 50  ALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYMVESF------RPVVAAMMDLPMP 102
           AL+ T  G KFFS G DL    A G +A ARE      E+F      R V          
Sbjct: 49  ALVITGDGEKFFSAGADLN-LFADGDKAVAREMARRFGEAFEALSAFRGV---------- 97

Query: 103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIG--------ATLPDYFTALFR 154
           ++AA+NG+A   G   AL+ D  I    +  + + E  +G          LP        
Sbjct: 98  SIAAINGYAMGGGLECALACDIRIAEE-QAQMALPEASVGLLPCAGGTQNLP-------- 148

Query: 155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVA-----EASMRLAKQMAG 207
             VG   A+R +L   +++    ALR+GLV      EE V      EA++ LA+++A 
Sbjct: 149 WLVGEGWAKRMILC-GERVDAATALRIGLV------EEVVEKGEAREAALALAQKVAN 199

Length = 258

>gnl|CDD|179599 PRK03580, PRK03580, carnitinyl-CoA dehydratase; Provisional

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
           A+IT +  KFFS G DL  A A G    A     +    F  +   + DL  P +AAVNG
Sbjct: 50  AIITGAGEKFFSAGWDLK-AAAEGEAPDAD----FGPGGFAGL-TEIFDLDKPVIAAVNG 103

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR 169
           +A   GF LAL+ D+++   D     + E  +G  +PD    L   K        ++++ 
Sbjct: 104 YAFGGGFELALAADFIVC-ADNASFALPEAKLG-IVPDSGGVLRLPKRLPPAIANEMVMT 161

Query: 170 AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
            +++  EEALR G+V      + ++ + +  LA+Q+ 
Sbjct: 162 GRRMDAEEALRWGIVNRVV-PQAELMDRARELAQQLV 197

Length = 261

>gnl|CDD|180298 PRK05870, PRK05870, enoyl-CoA hydratase; Provisional

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 61/177 (34%), Positives = 80/177 (45%), Gaps = 23/177 (12%)

Query: 30  AIDSILSA---IAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
           A+ + +SA    A A AEA P   AL+ T  GK F  G DL  A  A     A + L  +
Sbjct: 26  AVTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLT-ALGAAPGRPAEDGLRRI 84

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIM-RRDKGVLYMSEVDI--- 141
            + F     A+   P+PT+AAVNG A  AG  LAL+ D  I   +        ++ +   
Sbjct: 85  YDGF----LAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPKALFDARFQKLGLHPG 140

Query: 142 -GATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197
            GAT   +   L RA VG   AR   LL   +   E A+R GL     D  + VA A
Sbjct: 141 GGAT---WM--LQRA-VGPQVARA-ALLFGMRFDAEAAVRHGLALMVAD--DPVAAA 188

Length = 249

>gnl|CDD|200143 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase)

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 7/183 (3%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
           F P  +  I+ A+  A+ +   G  ++T +  K F +G D       G    +    L +
Sbjct: 27  FRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNV 86

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL 145
           ++  R     +   P P +A VNG+A   G  L +  D  I   +      +   +G+  
Sbjct: 87  LDVQR----QIRTCPKPVIAMVNGYAIGGGHVLHMMCDLTIA-AENARFGQTGPKVGSFD 141

Query: 146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
             Y ++     VG   A R++    ++   ++AL MGLV       + + + ++R  +++
Sbjct: 142 GGYGSSYMARIVGQKKA-REIWFLCRQYDAKQALDMGLVNTVVPLAD-LEKETVRWCREI 199

Query: 206 AGR 208
             +
Sbjct: 200 LQK 202

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 259

>gnl|CDD|132233 TIGR03189, dienoyl_CoA_hyt, cyclohexa-1,5-dienecarbonyl-CoA hydratase

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)

Query: 33  SILSAIAKAKAEATPGSAL---ITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF 89
           ++++A++ A  E    SAL   +  + G  FS G        A       ++   M+ S 
Sbjct: 27  AMIAALSAALGEHLEDSALRAVLLDAEGPHFSFG--------ASVAEHMPDQCAAMLASL 78

Query: 90  RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF 149
             +V AM+D P+P + AV G     G  +A + + +    D   L   E+ +G   P   
Sbjct: 79  HKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGVFAPAA- 136

Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA 197
           + L   ++G   A  D+L   + I G E  R+GL  A  +  E  A A
Sbjct: 137 SCLLPERMGRVAAE-DLLYSGRSIDGAEGARIGLANAVAEDPENAALA 183

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation. Length = 251

>gnl|CDD|168377 PRK06072, PRK06072, enoyl-CoA hydratase; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 20/196 (10%)

Query: 34  ILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVV 93
            +S + +  A+      ++T   G+ F  G DL+          A +  + + E+F P++
Sbjct: 32  FISKLKQINADPKIRVVIVTGE-GRAFCVGADLS--------EFAPDFAIDLRETFYPII 82

Query: 94  AAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYFTAL 152
             +       ++A+NG  A A   +ALS D+    RD K V     + +     D   A 
Sbjct: 83  REIRFSDKIYISAINGVTAGACIGIALSTDFKFASRDVKFVTAFQRLGLA---SDTGVAY 139

Query: 153 FRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG 212
           F  K+       ++L+   +   EEA R GL++    SE+ +++A   +A +++   +  
Sbjct: 140 FLLKLTGQRF-YEILVLGGEFTAEEAERWGLLKI---SEDPLSDA-EEMANRISNGPFQS 194

Query: 213 EVYAE--IRKSLYPDL 226
            + A+  I   LY DL
Sbjct: 195 YIAAKRMINLVLYNDL 210

Length = 248

>gnl|CDD|181008 PRK07509, PRK07509, enoyl-CoA hydratase; Provisional

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 49/166 (29%), Positives = 68/166 (40%), Gaps = 17/166 (10%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGAR--ERLLYMVESFRPVVAAMMDLPMPTVAAV 107
           A+I +  G  F  GLD+    ++   A     +RL       + V      LP+P +AA+
Sbjct: 50  AVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVPVIAAL 109

Query: 108 NGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDV 166
            G     G  +AL  D  I   D  +  M E   G  +PD   T   R  V     R+DV
Sbjct: 110 EGVCFGGGLQIALGADIRIAAPDTKLSIM-EAKWG-LVPDMAGTVSLRGLV-----RKDV 162

Query: 167 LLR----AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
                  A+    EEAL +GLV    D     A A   LA+++A R
Sbjct: 163 ARELTYTARVFSAEEALELGLVTHVSDDPLAAALA---LAREIAQR 205

Length = 262

>gnl|CDD|180987 PRK07468, PRK07468, enoyl-CoA hydratase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 47/166 (28%), Positives = 69/166 (41%), Gaps = 21/166 (12%)

Query: 35  LSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQA-----AGSRAGARERLLYMVESF 89
           L+  A+  A       ++ T  GK F  G DL W +A       +R     RL  M+   
Sbjct: 37  LTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMML--- 93

Query: 90  RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIG---ATLP 146
                A+ DLP P +  + G A   G  L    D  I         ++E  +G   AT+ 
Sbjct: 94  ----KALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIA-VSGARFGLTETRLGLIPATIS 148

Query: 147 DYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEE 192
            Y      A++G A ARR V + A+    EEA+R+GL+     +E 
Sbjct: 149 PYVV----ARMGEANARR-VFMSARLFDAEEAVRLGLLSRVVPAER 189

Length = 262

>gnl|CDD|131493 TIGR02440, FadJ, fatty oxidation complex, alpha subunit FadJ

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 8/127 (6%)

Query: 92  VVAAMMDLPMPTVAAVNGHAAAAGFTLALS-HDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
           + A +  LP+P VAA++G     G  LAL+ H  V    DK VL + EV +G       T
Sbjct: 88  LFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGLLPGSGGT 147

Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAA------YDSEEQVAEASMRLAKQ 204
                 +G +TA  D++L  K+++ ++AL++GLV          D+  ++A     + K 
Sbjct: 148 QRLPRLIGVSTA-LDMILTGKQLRAKQALKLGLVDDVVPQSILLDTAVEMALKGKPIRKP 206

Query: 205 MAGRKWA 211
           ++ ++  
Sbjct: 207 LSLQERL 213

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog model [Fatty acid and phospholipid metabolism, Degradation]. Length = 699

>gnl|CDD|180270 PRK05809, PRK05809, 3-hydroxybutyryl-CoA dehydratase; Validated

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 99  LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
           L  P +AA+NG A   G  L+++ D  I    K      EV +G T     T      VG
Sbjct: 96  LDKPVIAAINGFALGGGCELSMACDIRIASE-KAKFGQPEVGLGITPGFGGTQRLARIVG 154

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              A+ +++     I  EEALR+GLV    + E+ + EA   LA ++A  
Sbjct: 155 PGKAK-ELIYTGDMINAEEALRIGLVNKVVEPEKLMEEA-KALANKIAAN 202

Length = 260

>gnl|CDD|180591 PRK06494, PRK06494, enoyl-CoA hydratase; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 16/138 (11%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARER-LLYMVESFRPVVAAMMDLPMPTVAAVN 108
           A++T +  K FS G DL   QAAG + G  E     +   F        DL  P +AAVN
Sbjct: 52  AIVTGAGDKAFSAGNDLKE-QAAGGKRGWPESGFGGLTSRF--------DLDKPIIAAVN 102

Query: 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDV 166
           G A   GF LAL+ D +I+  +     + E  +G  L      L R   ++G   A   +
Sbjct: 103 GVAMGGGFELALACD-LIVAAENATFALPEPRVG--LAALAGGLHRLPRQIGLKRA-MGM 158

Query: 167 LLRAKKIKGEEALRMGLV 184
           +L  +++   E L +G V
Sbjct: 159 ILTGRRVTAREGLELGFV 176

Length = 259

>gnl|CDD|180424 PRK06144, PRK06144, enoyl-CoA hydratase; Provisional

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 92  VVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA 151
           V+ A+  L +PT+AA+ G     G  +A + D  I        +     +G  L     A
Sbjct: 94  VLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPSARFGFPIARTLGNCLSMSNLA 153

Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
              A +G+A   +D+L  A+ ++ EEAL  GLV    +     A A   LA+ +A
Sbjct: 154 RLVALLGAARV-KDMLFTARLLEAEEALAAGLVNEVVEDAALDARAD-ALAELLA 206

Length = 262

>gnl|CDD|168168 PRK05674, PRK05674, gamma-carboxygeranoyl-CoA hydratase; Validated

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 22/175 (12%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAA------GSRAGAR 79
           F    I  ++ A+ + +++A+    L+    G+ FS G DLAW Q +       +   AR
Sbjct: 30  FNAQMIRELILALDQVQSDASL-RFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDAR 88

Query: 80  E--RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMS 137
           E   L+Y           +  L +PT+A V G A      L    D  I   D     +S
Sbjct: 89  ELAELMY----------NLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLS 137

Query: 138 EVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEE 192
           EV IG   P   +      +G   ARR   L A++  G  A  +GL+  +Y + E
Sbjct: 138 EVRIGLA-PAVISPFVVKAIGERAARR-YALTAERFDGRRARELGLLAESYPAAE 190

Length = 265

>gnl|CDD|168278 PRK05864, PRK05864, enoyl-CoA hydratase; Provisional

 Score = 45.6 bits (108), Expect = 7e-06
 Identities = 51/168 (30%), Positives = 77/168 (45%), Gaps = 20/168 (11%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARE--RLLYMVESFRPVVAAMMDLPMPTVAAV 107
            ++ T  G+ FS+G D   A       G       L  +E    V+ A+  L  P +AAV
Sbjct: 57  VVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQPVIAAV 116

Query: 108 NGHAAAAGFTLALSHDYVIMR-----RDKGV---LYMSEVDIGATLPDYFTALFRAKVGS 159
           NG A   G  LAL+ D  +       R  G+   L  SE+ +   LP       RA +GS
Sbjct: 117 NGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLP-------RA-IGS 168

Query: 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           + A  +++L  + +  EEA R+GLV      +EQ+ +    +A +MAG
Sbjct: 169 SRA-FEIMLTGRDVDAEEAERIGLVSRQV-PDEQLLDTCYAIAARMAG 214

Length = 276

>gnl|CDD|180910 PRK07260, PRK07260, enoyl-CoA hydratase; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 32  DSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP 91
             IL A+  A+ + +    L+  ++GK FS G DL   + A       + L+ + E    
Sbjct: 32  QEILEALRLAEEDPSV-RFLLINANGKVFSVGGDLVEMKRAVD-EDDVQSLVKIAELVNE 89

Query: 92  VVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVI 126
           +  A+  LP P +  V+G  A A   +A++ D+ I
Sbjct: 90  ISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCI 124

Length = 255

>gnl|CDD|181069 PRK07657, PRK07657, enoyl-CoA hydratase; Provisional

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 50  ALITTSHG-KFFSNGLDLAWAQAAGSRAGARE-RLLYMVESFRPVVAAMMDLPMPTVAAV 107
            +I T  G K F  G DL        RAG  E ++ + V   R  +  +  LP P +AA+
Sbjct: 51  VVILTGAGEKAFCAGADLK------ERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI 104

Query: 108 NGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVL 167
           NG A   G  LAL+ D+ I   +   L ++E  +        T      +G   A ++++
Sbjct: 105 NGIALGGGLELALACDFRIA-AESASLGLTETTLAIIPGAGGTQRLPRLIGVGRA-KELI 162

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
              ++I  +EA  +GLV+    +   + E ++ +A+++A
Sbjct: 163 YTGRRISAQEAKEIGLVEFVVPAHL-LEEKAIEIAEKIA 200

Length = 260

>gnl|CDD|181386 PRK08321, PRK08321, naphthoate synthase; Validated

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 99  LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
           +P   +A V G AA  G +L +  D  +  R+      ++ D+G+    Y +A    +VG
Sbjct: 134 MPKVVIAVVPGWAAGGGHSLHVVCDLTLASREHARFKQTDADVGSFDGGYGSAYLARQVG 193

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              A R++    +    EEA  MG V A     E   EA +  A+++ G+
Sbjct: 194 QKFA-REIFFLGRTYSAEEAHDMGAVNAVVPHAELETEA-LEWAREINGK 241

Length = 302

>gnl|CDD|178269 PLN02664, PLN02664, enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 49  SALITTSHGKFFSNGLDL------AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP 102
           S +I +  G  F +G+DL      +   ++G R  + ERL   ++  +  + A+     P
Sbjct: 54  SVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKFLQDAITAIEQCRKP 113

Query: 103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATA 162
            +AA++G     G  +  + D      D     + EVD+  T          + VG   A
Sbjct: 114 VIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAITADLGTLQRLPSIVGYGNA 172

Query: 163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             ++ L  ++  G EA  +GLV   + S+E + E    +A+ +A +
Sbjct: 173 M-ELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAK 217

Length = 275

>gnl|CDD|181723 PRK09245, PRK09245, enoyl-CoA hydratase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 56/209 (26%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 5   EKHGDVFVLTLTGSSDVDEHR---FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
           E+ G +  LT+    +  E R       A+D++++A A   A+ +   A+I T  G  FS
Sbjct: 8   ERDGHIVTLTM----NRPETRNALSDNDAVDALVAACAAINADRSV-RAVILTGAGTAFS 62

Query: 62  NG---LDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTL 118
           +G    D+     A   + A  R  Y     + +  A+ +L +P +AAVNG A  AG  L
Sbjct: 63  SGGNVKDMRARVGAFGGSPADIRQGYR-HGIQRIPLALYNLEVPVIAAVNGPAIGAGCDL 121

Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA 178
           A   D  I   +      S V +G    D    L    +G A A  ++      I    A
Sbjct: 122 ACMCDIRIA-SETARFAESFVKLGLIPGDGGAWLLPRIIGMARA-AEMAFTGDAIDAATA 179

Query: 179 LRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           L  GLV     +++ +  A   LA+++A 
Sbjct: 180 LEWGLVSRVVPADQLLPAA-RALAERIAA 207

Length = 266

>gnl|CDD|180472 PRK06210, PRK06210, enoyl-CoA hydratase; Provisional

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 50/179 (27%), Positives = 71/179 (39%), Gaps = 25/179 (13%)

Query: 42  KAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARE---RLLYMVES--FRPVVAA 95
           +AEA P    ++ T  G+ F  G D+   Q      G R+   R         ++     
Sbjct: 44  RAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHF 103

Query: 96  MMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVL--------YMSEVDIGATLPD 147
           +  L  P +AA+NG  A  G T AL  D V    D             ++E  I   LP 
Sbjct: 104 LTALRKPVIAAINGACAGIGLTHALMCD-VRFAADGAKFTTAFARRGLIAEHGISWILPR 162

Query: 148 YFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
                    VG A A  D+LL A+    EEALR+GLV      +E +    +  A+ +A
Sbjct: 163 L--------VGHANAL-DLLLSARTFYAEEALRLGLVNRVVPPDELMERT-LAYAEDLA 211

Length = 272

>gnl|CDD|236109 PRK07827, PRK07827, enoyl-CoA hydratase; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 10/150 (6%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAG--ARERLLYMVESFRPVVAAMMDLPMPTVAAV 107
           A++ T  G  F  G DL+ A   G      A  R   M    R +V    +LP P +AA+
Sbjct: 53  AVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIV----ELPKPVIAAI 108

Query: 108 NGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVL 167
           +GH  A GF L  + D V+   +     ++E  IG   P   +     ++    A R   
Sbjct: 109 DGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGVA-PAIISLTLLPRLSPRAAAR-YY 165

Query: 168 LRAKKIKGEEALRMGLVQAAYDS-EEQVAE 196
           L  +K    EA R+GLV AA D  +  VA 
Sbjct: 166 LTGEKFGAAEAARIGLVTAAADDVDAAVAA 195

Length = 260

>gnl|CDD|131494 TIGR02441, fa_ox_alpha_mit, fatty acid oxidation complex, alpha subunit, mitochondrial

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 14/123 (11%)

Query: 100 PMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYFTALFRAKVG 158
             P VAA++G     G  LAL+  Y I  +D K +L + EV +G  LP         K+ 
Sbjct: 108 QKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLT 166

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVQ------------AAYDSEEQVAEASMRLAKQMA 206
              A  D++L  KKI+ + A +MG+V             A  ++ E + E +++ A+ +A
Sbjct: 167 GVPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLA 226

Query: 207 GRK 209
             K
Sbjct: 227 NGK 229

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human , pig , and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). Length = 737

>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 18/119 (15%)

Query: 98  DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV 157
           DLP+PTVAA+NG+A   G    L+ DY +   D          IG  LP+    +     
Sbjct: 100 DLPVPTVAAINGYALGGGCECVLATDYRVASPD--------ARIG--LPETKLGIMPGFG 149

Query: 158 GSATARR--------DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           G+    R        + +   K ++ E+AL++G V A    E+    A   L + +AG+
Sbjct: 150 GTVRLPRLIGADNALEWIAAGKDVRAEDALKVGAVDAVVAPEKLQEAALALLKQAIAGK 208

Length = 715

>gnl|CDD|215635 PLN03214, PLN03214, probable enoyl-CoA hydratase/isomerase; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 1/103 (0%)

Query: 100 PMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS 159
            + TV A+ G   A G  ++L  DY +    +G + ++EV +G  +P ++  LF  +V  
Sbjct: 107 RLATVCAIRGACPAGGCAVSLCCDYRLQT-TEGTMGLNEVALGIPVPKFWARLFMGRVID 165

Query: 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
                 +LLR + ++  EA ++GL+     +   +  A+  + 
Sbjct: 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAALMEAAASAME 208

Length = 278

>gnl|CDD|236162 PRK08138, PRK08138, enoyl-CoA hydratase; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 12/159 (7%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
           A++ T   K F+ G D+       + AGA E  L   E +     A+   P P +AAVNG
Sbjct: 55  AIVLTGGEKVFAAGADIK----EFATAGAIEMYLRHTERYW---EAIAQCPKPVIAAVNG 107

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGSATARRDVLL 168
           +A   G  LA+  D +I+  +       E+ +G       T  L RA VG   A R + L
Sbjct: 108 YALGGGCELAMHAD-IIVAGESASFGQPEIKVGLMPGAGGTQRLVRA-VGKFKAMR-MAL 164

Query: 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
               +   EAL +GLV    + E+ +  A + LA+++A 
Sbjct: 165 TGCMVPAPEALAIGLVSEVVEDEQTLPRA-LELAREIAR 202

Length = 261

>gnl|CDD|181329 PRK08258, PRK08258, enoyl-CoA hydratase; Provisional

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 14/121 (11%)

Query: 92  VVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY------MSEVDIGATL 145
           +V AM   P P +AAV+G  A AG  LA++ D  +        +      ++  D+GA  
Sbjct: 105 LVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPSAKTAFLFTRVGLAGADMGA-- 162

Query: 146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
                AL    +G   A   +L   + +  EE  R G      + EE +AEA   LA+++
Sbjct: 163 ----CALLPRIIGQGRASE-LLYTGRSMSAEEGERWGFFNRLVEPEELLAEAQ-ALARRL 216

Query: 206 A 206
           A
Sbjct: 217 A 217

Length = 277

>gnl|CDD|235733 PRK06190, PRK06190, enoyl-CoA hydratase; Provisional

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 62/221 (28%), Positives = 88/221 (39%), Gaps = 49/221 (22%)

Query: 5   EKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAI------AKAKAEATPG-SALITTSHG 57
           E H  V  LTL        +R  P A +++ +A+      A A+A+A      ++ T   
Sbjct: 9   ETHDRVRTLTL--------NR--PEARNALSAALRRALFAALAEADADDDVDVVVLTGAD 58

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
             F  GLDL      GS  GA++ L            A   +  P + A+NG A   G  
Sbjct: 59  PAFCAGLDLKELGGDGSAYGAQDAL-------PNPSPAWPAMRKPVIGAINGAAVTGGLE 111

Query: 118 LALSHDYVIMRRDKGVLYMSE----------VDIGATLPDY-FTALFRAKVGSATARRDV 166
           LAL+ D         +L  SE          V I   LP +  +     KVG   ARR +
Sbjct: 112 LALACD---------ILIASERARFADTHARVGI---LPGWGLSVRLPQKVGIGRARR-M 158

Query: 167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            L    +   +ALR GLV      +E +   + RLA  +AG
Sbjct: 159 SLTGDFLDAADALRAGLVTEVVPHDELL-PRARRLAASIAG 198

Length = 258

>gnl|CDD|235705 PRK06127, PRK06127, enoyl-CoA hydratase; Provisional

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 45/176 (25%), Positives = 77/176 (43%), Gaps = 16/176 (9%)

Query: 37  AIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAM 96
           A+A A+ +      ++T +  K F +G D++  + + S A A       VE+ +   AA+
Sbjct: 46  ALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQ---AAL 102

Query: 97  MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT---LPDYFTALF 153
            D   PT+A + G+    G  +AL+ D  I   D      S   I A    L   +  + 
Sbjct: 103 ADYAKPTIACIRGYCIGGGMGIALACDIRIAAED------SRFGIPAARLGLGYGYDGVK 156

Query: 154 R--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
                VG + A+ D+   A++    EALR+GLV     +++     +   A  +AG
Sbjct: 157 NLVDLVGPSAAK-DLFYTARRFDAAEALRIGLVHRVTAADDLETALADYAA-TIAG 210

Length = 269

>gnl|CDD|178210 PLN02600, PLN02600, enoyl-CoA hydratase

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 42/150 (28%), Positives = 68/150 (45%), Gaps = 9/150 (6%)

Query: 36  SAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAA 95
           SA  K +A+A+    ++ +S    F  G DL   +     +  ++     V S R   ++
Sbjct: 29  SAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSP-SEVQK----FVNSLRSTFSS 83

Query: 96  MMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFR 154
           +  L +PT+A V G A   G  LALS D  I   +  V  + E  + A +P    T    
Sbjct: 84  LEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGL-AIIPGAGGTQRLP 141

Query: 155 AKVGSATARRDVLLRAKKIKGEEALRMGLV 184
             VG + A ++++   ++I   EA  MGLV
Sbjct: 142 RLVGRSRA-KELIFTGRRIGAREAASMGLV 170

Length = 251

>gnl|CDD|236115 PRK07854, PRK07854, enoyl-CoA hydratase; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 50/199 (25%), Positives = 81/199 (40%), Gaps = 22/199 (11%)

Query: 8   GDVFVLTLTGSSDVDEHRFGPSA--IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLD 65
           G V  + L       E R   +A   + +  A+ KA  E+    A++ T  G  F  G D
Sbjct: 8   GQVLTIEL----QRPERRNALNAELCEELREAVRKAVDESA--RAIVLTGQGTVFCAGAD 61

Query: 66  LAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYV 125
           L+            + L+ M+ +   + AA    P+P +AA+NG A  AG  LA++ D  
Sbjct: 62  LS---GDVYADDFPDALIEMLHA---IDAA----PVPVIAAINGPAIGAGLQLAMACDLR 111

Query: 126 IMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQ 185
           ++   +          G  L ++      + VG   A R +LL A+K+  E+AL  G+  
Sbjct: 112 VV-APEAYFQFPVAKYGIALDNWTIRRLSSLVGGGRA-RAMLLGAEKLTAEQALATGMAN 169

Query: 186 --AAYDSEEQVAEASMRLA 202
                   +  A     LA
Sbjct: 170 RIGTLADAQAWAAEIAGLA 188

Length = 243

>gnl|CDD|235632 PRK05869, PRK05869, enoyl-CoA hydratase; Validated

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 90  RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIG-ATLPDY 148
           +  V A+  +P PTVAA+ G+A  AG TLAL+ D+ +   D      +E+  G A   D 
Sbjct: 89  QQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRV-SGDNVKFGATEILAGLAPSGDG 147

Query: 149 FTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV 184
              L RA  G + A ++++   +    EEAL +GL+
Sbjct: 148 MARLTRA-AGPSRA-KELVFSGRFFDAEEALALGLI 181

Length = 222

>gnl|CDD|215480 PLN02888, PLN02888, enoyl-CoA hydratase

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 47/171 (27%), Positives = 70/171 (40%), Gaps = 20/171 (11%)

Query: 35  LSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAA--GSRAGARERLLYMVESFRPV 92
           L+A  K   E      +I T  G+ F +G+DL  A+    G                 PV
Sbjct: 42  LAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGD---------VKDVETDPV 92

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTAL 152
            A M     P + A+NG A  AGF +AL+ D  I+   +G  ++         P +  + 
Sbjct: 93  -AQMERCRKPIIGAINGFAITAGFEIALACD--ILVASRGAKFIDTHAKFGIFPSWGLSQ 149

Query: 153 FRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEE------QVAEA 197
             +++  A   R+V L A  +  E A R GLV    +  E      +VAEA
Sbjct: 150 KLSRIIGANRAREVSLTAMPLTAETAERWGLVNHVVEESELLKKAREVAEA 200

Length = 265

>gnl|CDD|181249 PRK08139, PRK08139, enoyl-CoA hydratase; Validated

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 15/181 (8%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           + ++ +A+    A+ +    ++  + GK F  G DL   +AA   A       Y    F 
Sbjct: 40  LAALQAALDAIAADPSV-RVVVLAAAGKAFCAGHDLKEMRAARGLA-------YFRALFA 91

Query: 91  PVVAAMM---DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD 147
                M     LP P +A V+G A AAG  L  S D  +   D     +  V+IG     
Sbjct: 92  RCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVA-ADTARFAVPGVNIGLFCST 150

Query: 148 YFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
              AL R  V    A  ++LL  + I    A   GLV       + +  A  RLA  +A 
Sbjct: 151 PMVALSRN-VPRKQA-MEMLLTGEFIDAATAREWGLVNRVV-PADALDAAVARLAAVIAA 207

Query: 208 R 208
           +
Sbjct: 208 K 208

Length = 266

>gnl|CDD|236206 PRK08260, PRK08260, enoyl-CoA hydratase; Provisional

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 52/200 (26%)

Query: 50  ALITTSHGKFFSNGLDLA--------WAQAAGSRAGARERLLYMVESFRP----VVAAMM 97
           A+I T  G+ F  G DL+         A      A   +R     +  R     V   + 
Sbjct: 51  AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDDGVRDGGGRVTLRIF 110

Query: 98  DLPMPTVAAVNGHAAAAGFTLALSHD-----------YVIMRRDKGVLYMSEVDIGATLP 146
           D   P +AAVNG A   G T+ L+ D           +V  RR  G+           +P
Sbjct: 111 DSLKPVIAAVNGPAVGVGATMTLAMDIRLASTAARFGFVFGRR--GI-----------VP 157

Query: 147 DYFTALFRAK-VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA-------- 197
           +  ++ F  + VG  TA  + +   +    +EAL  GLV++ +  +E +  A        
Sbjct: 158 EAASSWFLPRLVGLQTA-LEWVYSGRVFDAQEALDGGLVRSVHPPDELLPAARALAREIA 216

Query: 198 ------SMRLAKQMAGRKWA 211
                 S+ L +QM  R   
Sbjct: 217 DNTSPVSVALTRQMMWRMAG 236

Length = 296

>gnl|CDD|235664 PRK05995, PRK05995, enoyl-CoA hydratase; Provisional

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 64/213 (30%), Positives = 92/213 (43%), Gaps = 29/213 (13%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
            +E+ G V  +TL    DV  + F  + I  + +A     A+ +   A++    GK F  
Sbjct: 7   EIEQRGQVATVTLN-RPDV-RNAFNETVIAELTAAFRALDADDSV-RAVVLAGAGKAFCA 63

Query: 63  GLDLAWAQAAGS------RAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G DL W +          RA AR RL  M+ +           P P +A V+G A A G 
Sbjct: 64  GADLNWMKKMAGYSDDENRADAR-RLADMLRAIY-------RCPKPVIARVHGDAYAGGM 115

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIG---ATLPDYFTALFRAKVGSATARRDVLLRAKKI 173
            L  + D  +   D  V  +SEV +G   AT+  Y   + RA +G   ARR  L  A++ 
Sbjct: 116 GLVAACDIAVA-ADHAVFCLSEVRLGLIPATISPY---VIRA-MGERAARRYFLT-AERF 169

Query: 174 KGEEALRMGLVQAAYDSEE---QVAEASMRLAK 203
              EALR+GLV     +E    +V E    L  
Sbjct: 170 DAAEALRLGLVHEVVPAEALDAKVDELLAALVA 202

Length = 262

>gnl|CDD|182026 PRK09674, PRK09674, enoyl-CoA hydratase-isomerase; Provisional

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 46/167 (27%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 43  AEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMD-LP 100
           A         + T + +FF+ G DL           A + L   +   RP +   +    
Sbjct: 41  AATDTSIGVCVITGNARFFAAGADL--------NEMAEKDLAATLNDPRPQLWQRLQAFN 92

Query: 101 MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGS 159
            P +AAVNG+A  AG  LAL  D VI   +     + E+ +G       T  L R+ VG 
Sbjct: 93  KPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGIMPGAGGTQRLIRS-VGK 150

Query: 160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
           + A + V L  + I  ++A + GLV   +  E  + E +++LA ++A
Sbjct: 151 SLASQMV-LTGESITAQQAQQAGLVSEVFPPELTL-ERALQLASKIA 195

Length = 255

>gnl|CDD|223524 COG0447, MenB, Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 99  LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG 158
           +P P +A V G+A   G  L +  D  I   D  +   +   +G+    Y ++     VG
Sbjct: 115 MPKPVIAMVAGYAIGGGHVLHVVCDLTIA-ADNAIFGQTGPKVGSFDGGYGSSYLARIVG 173

Query: 159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYA 216
              A R++    ++   EEAL MGLV       +   E            +WA E+ A
Sbjct: 174 QKKA-REIWFLCRQYDAEEALDMGLVNTVVPHADLEKE----------TVQWAREMLA 220

Length = 282

>gnl|CDD|236864 PRK11154, fadJ, multifunctional fatty acid oxidation complex subunit alpha; Reviewed

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 18/105 (17%)

Query: 92  VVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDY-VIMRRDKGVLYMSEVDIG-------- 142
           + A +  LP+P VAA++G     G  LAL+  Y V     K VL + EV +G        
Sbjct: 93  LFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGLLPGSGGT 152

Query: 143 ATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAA 187
             LP          +G +TA  D++L  K+++ ++AL++GLV   
Sbjct: 153 QRLP--------RLIGVSTA-LDMILTGKQLRAKQALKLGLVDDV 188

Length = 708

>gnl|CDD|180625 PRK06563, PRK06563, enoyl-CoA hydratase; Provisional

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 64/215 (29%), Positives = 89/215 (41%), Gaps = 32/215 (14%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDS-ILSAIAKAKAEATPGSAL---ITTSHGK 58
           + E+ G V ++ L    D    R   +A DS +L  +A A  E      L   +  +HG+
Sbjct: 2   SRERRGHVLLIGL----DRPAKR---NAFDSAMLDDLALALGEYEADDELRVAVLFAHGE 54

Query: 59  FFSNGLDLA-WA---QAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
            F+ GLDLA  A    A G          +     R        L  P V AV G+    
Sbjct: 55  HFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRR--------LSKPLVVAVQGYCLTL 106

Query: 115 GFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF---TALFRAKVGSATARRDVLLRAK 171
           G  L L+ D V+   +     + EV  G  LP  F   T  F    G   A R  LL   
Sbjct: 107 GIELMLAADIVVAADNTRFAQL-EVQRG-ILP--FGGATLRFPQAAGWGNAMR-YLLTGD 161

Query: 172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
           +   +EALR+GLVQ      EQ+  A + LA+++A
Sbjct: 162 EFDAQEALRLGLVQEVVPPGEQLERA-IELAERIA 195

Length = 255

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	243
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	100.0
PRK08139	266	enoyl-CoA hydratase; Validated	100.0
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	100.0
PRK05980	260	enoyl-CoA hydratase; Provisional	100.0
PRK06142	272	enoyl-CoA hydratase; Provisional	100.0
PRK06190	258	enoyl-CoA hydratase; Provisional	100.0
PRK05862	257	enoyl-CoA hydratase; Provisional	100.0
PRK05995	262	enoyl-CoA hydratase; Provisional	100.0
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	100.0
PRK08150	255	enoyl-CoA hydratase; Provisional	100.0
PRK06144	262	enoyl-CoA hydratase; Provisional	100.0
PRK07260	255	enoyl-CoA hydratase; Provisional	100.0
PRK06563	255	enoyl-CoA hydratase; Provisional	100.0
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	100.0
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	100.0
PRK06143	256	enoyl-CoA hydratase; Provisional	100.0
PRK08258	277	enoyl-CoA hydratase; Provisional	100.0
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	100.0
PRK07658	257	enoyl-CoA hydratase; Provisional	100.0
PRK09245	266	enoyl-CoA hydratase; Provisional	100.0
PRK05869	222	enoyl-CoA hydratase; Validated	100.0
PRK08140	262	enoyl-CoA hydratase; Provisional	100.0
PRK07511	260	enoyl-CoA hydratase; Provisional	100.0
PRK09076	258	enoyl-CoA hydratase; Provisional	100.0
PRK07327	268	enoyl-CoA hydratase; Provisional	100.0
PRK06127	269	enoyl-CoA hydratase; Provisional	100.0
PRK08138	261	enoyl-CoA hydratase; Provisional	100.0
PRK06023	251	enoyl-CoA hydratase; Provisional	100.0
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	100.0
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	100.0
PRK06688	259	enoyl-CoA hydratase; Provisional	100.0
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	100.0
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	100.0
PRK07657	260	enoyl-CoA hydratase; Provisional	100.0
PRK07799	263	enoyl-CoA hydratase; Provisional	100.0
PRK07659	260	enoyl-CoA hydratase; Provisional	100.0
PRK05981	266	enoyl-CoA hydratase; Provisional	100.0
PRK07468	262	enoyl-CoA hydratase; Provisional	100.0
PLN02600	251	enoyl-CoA hydratase	100.0
PRK06213	229	enoyl-CoA hydratase; Provisional	100.0
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08252	254	enoyl-CoA hydratase; Provisional	100.0
PRK05864	276	enoyl-CoA hydratase; Provisional	100.0
PRK05870	249	enoyl-CoA hydratase; Provisional	100.0
PLN02888	265	enoyl-CoA hydratase	100.0
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	100.0
PRK08260	296	enoyl-CoA hydratase; Provisional	100.0
PRK08259	254	enoyl-CoA hydratase; Provisional	100.0
PRK06494	259	enoyl-CoA hydratase; Provisional	100.0
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	100.0
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	100.0
PRK06495	257	enoyl-CoA hydratase; Provisional	100.0
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	100.0
PRK07938	249	enoyl-CoA hydratase; Provisional	100.0
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	100.0
PRK06210	272	enoyl-CoA hydratase; Provisional	100.0
PRK08290	288	enoyl-CoA hydratase; Provisional	100.0
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	100.0
PRK07509	262	enoyl-CoA hydratase; Provisional	100.0
PRK06072	248	enoyl-CoA hydratase; Provisional	100.0
PRK08272	302	enoyl-CoA hydratase; Provisional	100.0
PRK07854	243	enoyl-CoA hydratase; Provisional	100.0
PRK07827	260	enoyl-CoA hydratase; Provisional	100.0
PLN02921	327	naphthoate synthase	100.0
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	100.0
PRK08788	287	enoyl-CoA hydratase; Validated	100.0
PRK08321	302	naphthoate synthase; Validated	100.0
PRK12478	298	enoyl-CoA hydratase; Provisional	100.0
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	100.0
KOG1681	292	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	100.0
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
PRK11730	715	fadB multifunctional fatty acid oxidation complex	100.0
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	100.0
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	100.0
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	100.0
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	100.0
KOG0016	266	consensus Enoyl-CoA hydratase/isomerase [Lipid tra	100.0
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	100.0
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	100.0
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	100.0
KOG1679	291	consensus Enoyl-CoA hydratase [Lipid transport and	100.0
COG0447	282	MenB Dihydroxynaphthoic acid synthase [Coenzyme me	100.0
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	100.0
KOG1682	287	consensus Enoyl-CoA isomerase [Lipid transport and	100.0
KOG1684	401	consensus Enoyl-CoA hydratase [Lipid transport and	99.97
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.86
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.85
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.72
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.67
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.66
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.65
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.6
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.58
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.58
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.5
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	99.45
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.26
PRK10949	618	protease 4; Provisional	99.04
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	98.98
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	98.91
PRK11778	330	putative inner membrane peptidase; Provisional	98.88
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	98.84
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	98.84
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	98.83
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.8
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	98.79
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	98.75
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	98.69
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	98.66
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	98.6
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	98.6
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	98.55
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	98.52
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	98.44
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	98.44
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.34
PF01343	154	Peptidase_S49: Peptidase family S49 peptidase clas	98.29
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	98.21
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	98.2
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.19
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	98.19
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.19
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	98.14
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	98.12
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	98.1
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	98.06
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	98.04
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.98
PRK10949	618	protease 4; Provisional	97.95
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	97.9
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	97.79
CHL00174	296	accD acetyl-CoA carboxylase beta subunit; Reviewed	97.76
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	97.74
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	97.71
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	97.7
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	97.4
COG0777	294	AccD Acetyl-CoA carboxylase beta subunit [Lipid me	97.25
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	97.13
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	96.91
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	96.83
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	95.35
COG4799	526	Acetyl-CoA carboxylase, carboxyltransferase compon	93.38
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	91.89
KOG0540	536	consensus 3-Methylcrotonyl-CoA carboxylase, non-bi	91.44
PF02601	319	Exonuc_VII_L: Exonuclease VII, large subunit; Inte	88.29
TIGR00237	432	xseA exodeoxyribonuclease VII, large subunit. This	87.49
COG1570	440	XseA Exonuclease VII, large subunit [DNA replicati	83.33
PRK00286	438	xseA exodeoxyribonuclease VII large subunit; Revie	82.4

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=100.00  E-value=5.9e-49  Score=329.11  Aligned_cols=236  Identities=64%  Similarity=1.040  Sum_probs=204.2

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |+.++++++|++|+||+|   +.|+++.+++.+|.+++++++.|++++.+||++|.|++||+|.|++++...   .....
T Consensus         1 ~~~~~~~~~v~~i~Lnrp---~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~---~~~~~   74 (239)
T PLN02267          1 MCTLEKRGNLFILTLTGD---GEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAA---GSAPS   74 (239)
T ss_pred             CceeEecCCEEEEEeCCC---CcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhcc---ccCHH
Confidence            789999999999999999   569999999999999999999998875488889999999999999986531   11122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++++++||+||+++++++|++||.++|+++|++++.++++++| .
T Consensus        75 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~~p~~~~~~l~~~vG-~  153 (239)
T PLN02267         75 RLHLMVAKLRPLVADLISLPMPTIAAVTGHASAAGFILALSHDYVLMRKDRGVLYMSEVDIGLPLPDYFMALLRAKIG-S  153 (239)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCEEEEECCcchHHHHHHHHHCCEEEecCCCCeEeccccccCCCCChHHHHHHHHHcC-h
Confidence            223344557788899999999999999999999999999999999998654799999999999558888889999999 8


Q ss_pred             HHH-HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhccchhhhh-
Q 041046          161 TAR-RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAVV-  238 (243)
Q Consensus       161 ~~a-~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~~~~~~~~-  238 (243)
                      .++ ++++++|++++|+||+++||||+++++.+++.+++.++|+++++.+|.+.++..+|+.++++..+.+..+.+.-+ 
T Consensus       154 ~~a~~~llltG~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~A~~ia~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  233 (239)
T PLN02267        154 PAARRDVLLRAAKLTAEEAVEMGIVDSAHDSAEETVEAAVRLGEELAARKWNGEVYASIRKSLLPEVCGKLGLDEEVEES  233 (239)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCcceecCCHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHhcchhhhhhh
Confidence            888 699999999999999999999999986578999999999999999878999999999999999888776555443 


Q ss_pred             -ccCCC
Q 041046          239 -SNSKL  243 (243)
Q Consensus       239 -~~~~~  243 (243)
                       +.+||
T Consensus       234 ~~~~~~  239 (239)
T PLN02267        234 HTTSKL  239 (239)
T ss_pred             hcccCC
Confidence             34443

>PRK08139 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=2.2e-49  Score=336.79  Aligned_cols=213  Identities=22%  Similarity=0.285  Sum_probs=194.0

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++.....    ..
T Consensus        12 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~   84 (266)
T PRK08139         12 LLLREDRDGVATLTLNRPQ--AFNALSEAMLAALQAALDAIAADPSVR-VVVLAAAGKAFCAGHDLKEMRAARG----LA   84 (266)
T ss_pred             ceEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEecCCCcceeccCHHHHhcccc----hh
Confidence            3678899999999999996  789999999999999999999999999 9999999999999999998754211    22


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ...++...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++++.++++++| .
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~l~r~vG-~  161 (266)
T PRK08139         85 YFRALFARCSRVMQAIVALPQPVIARVHGIATAAGCQLVASCDLAVAADT-ARFAVPGVNIGL-FCSTPMVALSRNVP-R  161 (266)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHhCCEEEEeCC-CEEeCcccCcCC-CCCccHHHHHHHhC-H
Confidence            33444556778899999999999999999999999999999999999988 899999999999 78888889999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.++..+|+.++...
T Consensus       162 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  224 (266)
T PRK08139        162 KQAMEMLLTGEFIDAATAREWGLVNRVVPA-DALDAAVARLAAVIAAKS--PAAVRIGKEAFYRQA  224 (266)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCccEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence            999999999999999999999999999998 899999999999999999  999999999997653

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=100.00  E-value=5.7e-49  Score=335.70  Aligned_cols=217  Identities=18%  Similarity=0.212  Sum_probs=192.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus        10 i~~~~~~~va~itlnrp~--~~Nal~~~m~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   85 (275)
T PRK09120         10 VKVEVEDGIAWVTLNRPE--KRNAMSPTLNREMIDVLDALEFDDDAG-VLVLTGAGDAWSAGMDLKEYFRETD-AQPEIL   85 (275)
T ss_pred             EEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCceecCcCHHHHhhccc-cchhHH
Confidence            678899999999999997  889999999999999999999999999 9999999999999999998643211 111111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      .......+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        86 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~  162 (275)
T PRK09120         86 QERIRREAYGWWRRLRWYQKPTIAMVNGWCFGGGFSPLVACDLAIAADE-AQFGLSEINWGI-PPGGGVSKAMADTVG-H  162 (275)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEechhHHHHHhCCEEEEeCC-cEecCCccccCC-CCCcchHHHHHHHcC-H
Confidence            2233334567888999999999999999999999999999999999988 899999999999 67776 679999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++|||++|+++ +++.+++.+++++++..|  |.++..+|+.++.....
T Consensus       163 ~~a~~llltg~~~~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  227 (275)
T PRK09120        163 RDALYYIMTGETFTGRKAAEMGLVNESVPL-AQLRARTRELAAKLLEKN--PVVLRAAKDGFKRVREL  227 (275)
T ss_pred             HHHHHHHhcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999998 899999999999999999  99999999999866433

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-49  Score=333.84  Aligned_cols=215  Identities=25%  Similarity=0.333  Sum_probs=192.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... .....
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~-~~~~~   80 (260)
T PRK05980          5 VLIEIRDGIALLTLNRPE--KLNALNYALIDRLLARLDAIEVDESVR-AVILTGAGDRAFSAGADIHEFSASVA-AGADV   80 (260)
T ss_pred             EEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEeCCCCceEcCcCHHHHhhhcc-ccchh
Confidence            678899999999999997  789999999999999999999999999 99999998 79999999998754211 11122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  157 (260)
T PRK05980         81 ALRDFVRRGQAMTARLEAFPKPVIAAVNGLAFGGGCEITEAVHLAIASER-ALFAKPEIRLGM-PPTFGGTQRLPRLAG-  157 (260)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCCEEEecCC-CEecCcccccCC-CCCchHhhHHHhhcC-
Confidence            23455556677888999999999999999999999999999999999987 899999999999 67766 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.++..+|+.++...
T Consensus       158 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~~~  221 (260)
T PRK05980        158 RKRALELLLTGDAFSAERALEIGLVNAVVPH-EELLPAARALARRIIRHS--PVAVAAILTAVTRGL  221 (260)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCCcccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999998  999999999987653

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.2e-49  Score=334.59  Aligned_cols=218  Identities=22%  Similarity=0.294  Sum_probs=194.0

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccc---c---
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGS---R---   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~---~---   75 (243)
                      +.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++.....   .   
T Consensus         8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~   84 (272)
T PRK06142          8 FTVELADHVAQVTLNRPG--KGNAMNPAFWSELPEIFRWLDADPEVR-AVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGL   84 (272)
T ss_pred             EEEEecCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhhhccccccccc
Confidence            567889999999999997  889999999999999999999999999 9999999999999999998754110   0   


Q ss_pred             cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHH
Q 041046           76 AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR  154 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~  154 (243)
                      ..+......+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~  162 (272)
T PRK06142         85 ARPRTDLRREILRLQAAINAVADCRKPVIAAVQGWCIGGGVDLISACDMRYASAD-AKFSVREVDLGM-VADVGSLQRLP  162 (272)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhCCCCEEEEecCccccchHHHHHhCCEEEecCC-CeecchhhhhCC-CCCchHHHHHH
Confidence            0112233445556788899999999999999999999999999999999999988 899999999999 67776 68999


Q ss_pred             HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +++| ..++++++++|++++|+||+++||||+|+++.+++.+++.++++++++.|  |.++..+|+.++....
T Consensus       163 ~~~G-~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~  232 (272)
T PRK06142        163 RIIG-DGHLRELALTGRDIDAAEAEKIGLVNRVYDDADALLAAAHATAREIAAKS--PLAVRGTKEVLDYMRD  232 (272)
T ss_pred             HHhC-HHHHHHHHHhCCCcCHHHHHHcCCccEecCCHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            9999 99999999999999999999999999999865789999999999999999  9999999999986643

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.4e-49  Score=331.25  Aligned_cols=211  Identities=23%  Similarity=0.338  Sum_probs=191.0

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++....   . ..
T Consensus         5 ~v~~~~~~~va~Itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~---~-~~   77 (258)
T PRK06190          5 ILLVETHDRVRTLTLNRPE--ARNALSAALRRALFAALAEADADDDVD-VVVLTGADPAFCAGLDLKELGGDG---S-AY   77 (258)
T ss_pred             eEEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhccc---c-hh
Confidence            4788999999999999997  789999999999999999999999999 999999999999999999876421   1 11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ..   ...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        78 ~~---~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  151 (258)
T PRK06190         78 GA---QDALPNPSPAWPAMRKPVIGAINGAAVTGGLELALACDILIASER-ARFADTHARVGI-LPGWGLSVRLPQKVG-  151 (258)
T ss_pred             hH---HHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEeCC-CEEECcccccCc-CCCccHHHHHHHHhC-
Confidence            11   234567888999999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..|  |.+++.+|+.++....
T Consensus       152 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  216 (258)
T PRK06190        152 IGRARRMSLTGDFLDAADALRAGLVTEVVPH-DELLPRARRLAASIAGNN--PAAVRALKASYDDGAA  216 (258)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCCeEecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999997 889999999999999999  9999999999986533

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=9.8e-49  Score=331.54  Aligned_cols=209  Identities=21%  Similarity=0.276  Sum_probs=188.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|+.||+|.|++++...   +. .+ 
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~-   77 (257)
T PRK05862          6 ILVETRGRVGLITLNRPK--ALNALNDALMDELGAALAAFDADEGIG-AIVITGSEKAFAAGADIKEMADL---SF-MD-   77 (257)
T ss_pred             EEEEeeCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCceECCcChHhHhcc---ch-hH-
Confidence            678899999999999996  789999999999999999999999999 99999999999999999987542   11 11 


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                        .+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        78 --~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T PRK05862         78 --VYKGDYITNWEKVARIRKPVIAAVAGYALGGGCELAMMCDIIIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAVG-K  152 (257)
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCCEEEEeCC-CEEeCchhccCc-CCCccHHHHHHHHhC-H
Confidence              11223445778899999999999999999999999999999999988 899999999999 78876 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.++..+|+.++...
T Consensus       153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  215 (257)
T PRK05862        153 AKAMDLCLTGRMMDAAEAERAGLVSRVVPA-DKLLDEALAAATTIASFS--LPAVMMAKEAVNRAY  215 (257)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCCCEeeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 899999999999999998  999999999997654

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.3e-48  Score=331.72  Aligned_cols=213  Identities=23%  Similarity=0.368  Sum_probs=190.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   81 (262)
T PRK05995          6 LEIEQRGQVATVTLNRPD--VRNAFNETVIAELTAAFRALDADDSVR-AVVLAGAGKAFCAGADLNWMKKMAG-YSDDEN   81 (262)
T ss_pred             EEEEeeCCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCccccCcCHHHHhhhcc-cCchhh
Confidence            678899999999999997  789999999999999999999999999 9999999999999999998754211 010111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                       ......+.+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus        82 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vg-~~  157 (262)
T PRK05995         82 -RADARRLADMLRAIYRCPKPVIARVHGDAYAGGMGLVAACDIAVAADH-AVFCLSEVRLGL-IPATISPYVIRAMG-ER  157 (262)
T ss_pred             -hhHHHHHHHHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCCEEEeeCC-CEEeCccccccc-CccchHHHHHHHhC-HH
Confidence             112344677888999999999999999999999999999999999988 899999999999 78888778999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.++..+|+.++..
T Consensus       158 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  218 (262)
T PRK05995        158 AARRYFLTAERFDAAEALRLGLVHEVVPA-EALDAKVDELLAALVANS--PQAVRAGKRLVRDV  218 (262)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            99999999999999999999999999987 889999999999999998  99999999999765

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=100.00  E-value=1.3e-48  Score=330.39  Aligned_cols=209  Identities=22%  Similarity=0.339  Sum_probs=189.5

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++...    ... 
T Consensus         3 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~~~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~~~-   74 (255)
T PRK09674          3 ELLVSRQQRVLLLTLNRPE--ARNALNNALLTQLVNELEAAATDTSIG-VCVITGNARFFAAGADLNEMAEK----DLA-   74 (255)
T ss_pred             eEEEEeECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecccChHhHhcc----chh-
Confidence            3678899999999999996  789999999999999999999999999 99999999999999999987531    101 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                        ..+.....+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        75 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-  149 (255)
T PRK09674         75 --ATLNDPRPQLWQRLQAFNKPLIAAVNGYALGAGCELALLCDIVIAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG-  149 (255)
T ss_pred             --hhHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEeCchhhcCC-CCCccHHHHHHHHhC-
Confidence              112234566888999999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++..
T Consensus       150 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  212 (255)
T PRK09674        150 KSLASQMVLTGESITAQQAQQAGLVSEVFPP-ELTLERALQLASKIARHS--PLALRAAKQALRQS  212 (255)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  99999999998764

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-48  Score=329.39  Aligned_cols=209  Identities=18%  Similarity=0.242  Sum_probs=188.5

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+++.+|.+++++++  ++++ +||+||.|++||+|.|++++... .    ..
T Consensus         3 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~--~~vr-~vvltg~g~~F~aG~Dl~~~~~~-~----~~   72 (255)
T PRK08150          3 LVSYELDGGVATIGLNRPA--KRNALNDGLIAALRAAFARLP--EGVR-AVVLHGEGDHFCAGLDLSELRER-D----AG   72 (255)
T ss_pred             eEEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHhh--cCCe-EEEEECCCCceecCcCHHHHhhc-c----ch
Confidence            4678999999999999997  789999999999999999998  7899 99999999999999999987542 1    11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-  149 (255)
T PRK08150         73 EGMHHSRRWHRVFDKIQYGRVPVIAALHGAVVGGGLELASAAHIRVADES-TYFALPEGQRGI-FVGGGGSVRVPRLIG-  149 (255)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEeCC-CEEeccccccCC-CCCccHHHHHHHHhC-
Confidence            11233455677888999999999999999999999999999999999988 899999999999 66665 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++..
T Consensus       150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  212 (255)
T PRK08150        150 VARMTDMMLTGRVYDAQEGERLGLAQYLVPA-GEALDKAMELARRIAQNA--PLTNFAVLNALPRI  212 (255)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  99999999999765

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.3e-48  Score=329.97  Aligned_cols=214  Identities=21%  Similarity=0.260  Sum_probs=192.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.| ++||+|.|++++.....    ..
T Consensus        10 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVltg~g~~~F~aG~Dl~~~~~~~~----~~   82 (262)
T PRK06144         10 LLLEVRGGIARITFNRPA--ARNAMTWAMYEGLAEICEAIAADPSIR-AVVLRGAGDKAFVAGTDIAQFRAFST----AE   82 (262)
T ss_pred             eEEEeeCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcCHHHHhhccc----hh
Confidence            678899999999999997  789999999999999999999999999 99999998 79999999998754211    11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc-cCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD-IGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~-~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||.+ +|+ +|++| ++++++++|
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~~G~-~p~~g~~~~l~~~vG  160 (262)
T PRK06144         83 DAVAYERRIDRVLGALEQLRVPTIAAIAGACVGGGAAIAAACDLRIATPS-ARFGFPIARTLGN-CLSMSNLARLVALLG  160 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeehHHHHHHhCCEEEecCC-CEeechhHHhccC-CCCccHHHHHHHHhC
Confidence            12234455678888999999999999999999999999999999999988 899999996 999 66665 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                       ...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.++..+|+.++.....
T Consensus       161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~  226 (262)
T PRK06144        161 -AARVKDMLFTARLLEAEEALAAGLVNEVVED-AALDARADALAELLAAHA--PLTLRATKEALRRLRRE  226 (262)
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhc
Confidence             9999999999999999999999999999998 899999999999999999  99999999999876433

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.5e-48  Score=328.67  Aligned_cols=217  Identities=23%  Similarity=0.340  Sum_probs=193.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..+...
T Consensus         4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   79 (255)
T PRK07260          4 IIYEVEDDLATLTLNRPE--VSNGFNIPMCQEILEALRLAEEDPSVR-FLLINANGKVFSVGGDLVEMKRAVD-EDDVQS   79 (255)
T ss_pred             eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccccCHHHHHhhcc-ccchhh
Confidence            578889999999999997  789999999999999999999999999 9999999999999999998764211 111222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  156 (255)
T PRK07260         80 LVKIAELVNEISFAIKQLPKPVIMCVDGAVAGAAANMAVAADFCIASTK-TKFIQAFVGVGL-APDAGGLFLLTRAIG-L  156 (255)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEecCeeehhhHHHHHhCCEEEEeCC-CEEechHhhcCC-CCCCchhhhhHHhhC-H
Confidence            2334455678888999999999999999999999999999999999988 899999999999 67766 679999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..+++|+++|++++|+||+++||||+++++ +++.+.+.++++++++.|  +.++..+|+.++.....
T Consensus       157 ~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~  221 (255)
T PRK07260        157 NRATHLAMTGEALTAEKALEYGFVYRVAES-EKLEKTCEQLLKKLRRGS--SNSYAAIKSLVWESFFK  221 (255)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999997 889999999999999998  99999999999876433

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.7e-48  Score=329.74  Aligned_cols=211  Identities=26%  Similarity=0.318  Sum_probs=185.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++..... +. .  
T Consensus         1 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~-~~-~--   73 (255)
T PRK06563          1 VSRERRGHVLLIGLDRPA--KRNAFDSAMLDDLALALGEYEADDELR-VAVLFAHGEHFTAGLDLADVAPKLA-AG-G--   73 (255)
T ss_pred             CeEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCCcCCcCHHHHhhccc-cc-h--
Confidence            578899999999999997  789999999999999999999999999 9999999999999999998754211 11 1  


Q ss_pred             HHHHHH-hHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           82 LLYMVE-SFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~-~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                       .++.. ....+...+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        74 -~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  149 (255)
T PRK06563         74 -FPFPEGGIDPWGTVGRRLSKPLVVAVQGYCLTLGIELMLAADIVVAADN-TRFAQLEVQRGI-LPFGGATLRFPQAAG-  149 (255)
T ss_pred             -hhhhhhhhHHHHHHHhcCCCCEEEEEcCeeecHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhh-
Confidence             11111 1222333578999999999999999999999999999999988 899999999999 67776 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.+++.+|+.++...
T Consensus       150 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~  213 (255)
T PRK06563        150 WGNAMRYLLTGDEFDAQEALRLGLVQEVVPP-GEQLERAIELAERIARAA--PLGVQATLASARAAV  213 (255)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999998  999999999987653

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=100.00  E-value=2.5e-48  Score=328.78  Aligned_cols=210  Identities=22%  Similarity=0.324  Sum_probs=189.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++... . +. . 
T Consensus         4 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~~F~aG~Dl~~~~~~-~-~~-~-   76 (256)
T TIGR03210         4 ILYEKRNGIAWIMINRPA--KMNAFRGQTCDELIHALKDAGYDRQIG-VIVLAGAGDKAFCTGGDQSTHDGG-Y-DG-R-   76 (256)
T ss_pred             eEEEeeCCEEEEEEcCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCceecCcChHHHhcc-c-cc-h-
Confidence            678899999999999997  889999999999999999999999999 99999998 799999999987431 1 11 1 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                        ..+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+.+|++|++++++++| .
T Consensus        77 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~~~~~~~~~~l~~~vG-~  152 (256)
T TIGR03210        77 --GTIGLPMEELHSAIRDVPKPVIARVQGYAIGGGNVLVTICDLTIASEK-AQFGQVGPKVGSVDPGYGTALLARVVG-E  152 (256)
T ss_pred             --hHHHHHHHHHHHHHHhCCCCEEEEECCEEehhhHHHHHhCCEEEEeCC-CEEecccccccccCCccHHHHHHHHhC-H
Confidence              112233567888999999999999999999999999999999999988 899999999999446667889999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.+++.+|+.++..
T Consensus       153 ~~A~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~  214 (256)
T TIGR03210       153 KKAREIWYLCRRYTAQEALAMGLVNAVVPH-DQLDAEVQKWCDEIVEKS--PTAIAIAKRSFNMD  214 (256)
T ss_pred             HHHHHHHHhCCCcCHHHHHHcCCceeeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 899999999999999999  99999999999765

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=100.00  E-value=3.6e-48  Score=327.95  Aligned_cols=213  Identities=24%  Similarity=0.301  Sum_probs=188.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++++++|+ ++ +||++|.|++||+|.|++++.....  ...+.
T Consensus         1 ~~~e~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~-v~-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~   74 (256)
T TIGR02280         1 ILSALEAGVARLTLNRPD--KLNSFTAEMHLELREALERVERDD-AR-ALMLTGAGRGFCAGQDLSERNPTPG--GAPDL   74 (256)
T ss_pred             CeEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCC-cE-EEEEECCCCCcccCcCHHHHhhccc--cchhH
Confidence            568899999999999997  889999999999999999999998 99 9999999999999999998764211  11111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+..++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        75 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~lG~-~p~~g~~~~l~~~vG-~  151 (256)
T TIGR02280        75 GRTIETFYNPLVRRLRALPLPVVCAVNGVAAGAGANLALACDIVLAAES-ARFIQAFAKIGL-IPDSGGTWSLPRLVG-R  151 (256)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeChhhhcCC-CCCccHHHHHHHHhC-H
Confidence            1222233466788899999999999999999999999999999999988 899999999999 67665 679999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++|+++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.++..+|+.++...
T Consensus       152 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~~~~~~K~~l~~~~  214 (256)
T TIGR02280       152 ARAMGLAMLGEKLDARTAASWGLIWQVVDD-AALMDEAQALAVHLAAQP--TRGLALTKRAIQAAA  214 (256)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 899999999999999999  999999999997653

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-48  Score=328.43  Aligned_cols=211  Identities=23%  Similarity=0.302  Sum_probs=190.5

Q ss_pred             ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      +.++ .+++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||+||.| ++||+|.|++++... .    .
T Consensus         8 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~   79 (256)
T PRK06143          8 AGVTRDDRGVATLTIRNAG--SLNILGTPVILALTQALRWLAADPDVR-VLVLRGAGEKAFIGGADIKEMATL-D----Q   79 (256)
T ss_pred             ceeeecCCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEeCCCCcccCCcCHHHHhhc-C----h
Confidence            3455 46789999999997  889999999999999999999999999 99999998 799999999987542 1    2


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++++++++++| 
T Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-p~~~~~~~l~~~iG-  156 (256)
T PRK06143         80 ASAEAFISRLRDLCDAVRHFPVPVIARIPGWCLGGGLELAAACDLRIAAHD-AQFGMPEVRVGI-PSVIHAALLPRLIG-  156 (256)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEecCC-CEEeCCccccCC-CCccHHHHHHHhcC-
Confidence            223345566788899999999999999999999999999999999999988 899999999998 66667889999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|+.++|+||+++||||+|+|+ +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       157 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  220 (256)
T PRK06143        157 WARTRWLLLTGETIDAAQALAWGLVDRVVPL-AELDAAVERLAASLAGCG--PQALRQQKRLLREWE  220 (256)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCcCeecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999998 899999999999999999  999999999988753

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-48  Score=331.36  Aligned_cols=216  Identities=19%  Similarity=0.205  Sum_probs=192.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|+++.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++..... +.+...
T Consensus        19 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~vVltg~g~~FsaG~Dl~~~~~~~~-~~~~~~   94 (277)
T PRK08258         19 FLWEVDDGVATITLNRPE--RKNPLTFESYAELRDLFRELVYADDVK-AVVLTGAGGNFCSGGDVHEIIGPLT-KMDMPE   94 (277)
T ss_pred             eEEEEECCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEeCCCCCcccccCHHHHhcccc-ccChhH
Confidence            567889999999999997  889999999999999999999999999 9999999999999999998743111 111222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+++|++| ++++++++| .
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~vG-~  172 (277)
T PRK08258         95 LLAFTRMTGDLVKAMRACPQPIIAAVDGVCAGAGAILAMASDLRLGTPS-AKTAFLFTRVGLAGADMGACALLPRIIG-Q  172 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEEeccccccCcCCCCchHHHHHHHHhC-H
Confidence            3345555678899999999999999999999999999999999999988 899999999999334555 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.+++.+|+.++...
T Consensus       173 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  235 (277)
T PRK08258        173 GRASELLYTGRSMSAEEGERWGFFNRLVEP-EELLAEAQALARRLAAGP--TFAHGMTKTMLHQEW  235 (277)
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 889999999999999999  999999999998653

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=100.00  E-value=2e-48  Score=330.83  Aligned_cols=216  Identities=22%  Similarity=0.321  Sum_probs=190.4

Q ss_pred             ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++ ++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++.....  .+..
T Consensus         7 l~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~al~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~--~~~~   81 (265)
T PRK05674          7 IELIRDPRGFATLWLSRAD--KNNAFNAQMIRELILALDQVQSDASLR-FLLLRGRGRHFSAGADLAWMQQSAD--LDYN   81 (265)
T ss_pred             EEEEEcCCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhccc--ccch
Confidence            567775 789999999997  889999999999999999999999999 9999999999999999998753211  0011


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ........+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+.++++++| .
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gi-~p~~~~~~l~~~vG-~  158 (265)
T PRK05674         82 TNLDDARELAELMYNLYRLKIPTLAVVQGAAFGGALGLISCCDMAIGADD-AQFCLSEVRIGL-APAVISPFVVKAIG-E  158 (265)
T ss_pred             hhhHHHHHHHHHHHHHHcCCCCEEEEEcCEEEechhhHhhhcCEEEEeCC-CEEeCcccccCC-CcchhHHHHHHHhC-H
Confidence            11112234567888999999999999999999999999999999999988 899999999999 78888778999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|+.++|+||+++||||+|++. +++.+++.++++++++.|  |.+++.+|+.++.....
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  223 (265)
T PRK05674        159 RAARRYALTAERFDGRRARELGLLAESYPA-AELEAQVEAWIANLLLNS--PQALRASKDLLREVGDG  223 (265)
T ss_pred             HHHHHHHHhCcccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999997 899999999999999999  99999999998766433

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-48  Score=328.24  Aligned_cols=210  Identities=20%  Similarity=0.364  Sum_probs=190.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|   +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++.....    ...
T Consensus         4 i~~~~~~~v~~itl~rp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~----~~~   75 (257)
T PRK07658          4 LSVRVEDHVAVITLNHP---PANALSSQVLHELSELLDQVEKDDNVR-VVVIHGEGRFFSAGADIKEFTSVTE----AEQ   75 (257)
T ss_pred             EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhccCc----hhh
Confidence            67889999999999999   459999999999999999999999999 9999999999999999998754211    122


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.....+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T PRK07658         76 ATELAQLGQVTFERVEKFSKPVIAAIHGAALGGGLELAMSCHIRFATES-AKLGLPELNLGL-IPGFAGTQRLPRYVG-K  152 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCCEEEecCC-CcccCcccccCC-CCCCcHHHHHHHHhC-H
Confidence            3344455678899999999999999999999999999999999999988 899999999999 78876 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.++..+|+.++..
T Consensus       153 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  214 (257)
T PRK07658        153 AKALEMMLTSEPITGAEALKWGLVNGVFPE-ETLLDDAKKLAKKIAGKS--PATTRAVLELLQTT  214 (257)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCcCeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            999999999999999999999999999987 899999999999999998  99999999999765

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.4e-48  Score=329.83  Aligned_cols=217  Identities=23%  Similarity=0.299  Sum_probs=191.2

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCH-HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccc-c-c
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGP-SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSR-A-G   77 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~-~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~-~-~   77 (243)
                      +|.++++++|++|+||+|+  +.|++|. +++++|.+++++++.|++++ +||++|.|++||+|.|++++...... . .
T Consensus         4 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~   80 (266)
T PRK09245          4 FLLVERDGHIVTLTMNRPE--TRNALSDNDAVDALVAACAAINADRSVR-AVILTGAGTAFSSGGNVKDMRARVGAFGGS   80 (266)
T ss_pred             ceEEEEECCEEEEEECCcc--cccCCChHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCHHHHhhcccccccc
Confidence            3688999999999999997  7899995 99999999999999999999 99999999999999999987542110 0 0


Q ss_pred             hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      .......+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~  158 (266)
T PRK09245         81 PADIRQGYRHGIQRIPLALYNLEVPVIAAVNGPAIGAGCDLACMCDIRIASET-ARFAESFVKLGL-IPGDGGAWLLPRI  158 (266)
T ss_pred             chhHHHHHHHHHHHHHHHHHcCCCCEEEEECCEeecHHHHHHHhCCEEEecCC-CEEcccccccCc-CCCcchhhhHHHH
Confidence            01111223344567888999999999999999999999999999999999988 899999999999 67776 6799999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +| ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.+++.+|+.++...
T Consensus       159 vG-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  224 (266)
T PRK09245        159 IG-MARAAEMAFTGDAIDAATALEWGLVSRVVPA-DQLLPAARALAERIAANP--PHALRLTKRLLREGQ  224 (266)
T ss_pred             hh-HHHHHHHHHcCCCcCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            99 9999999999999999999999999999997 889999999999999999  999999999998653

>PRK05869 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.1e-48  Score=319.60  Aligned_cols=204  Identities=21%  Similarity=0.273  Sum_probs=184.5

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      +++|++|+||+|   +.|++|.+++.+|.+++++++.|++++ +||+||.|++||+|.|++++... .    ........
T Consensus        15 ~~~i~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~~~~~~~   85 (222)
T PRK05869         15 DAGLATLLLSRP---PTNALTRQVYREIVAAANELGRRDDVA-AVILYGGHEIFSAGDDMPELRTL-S----AQEADTAA   85 (222)
T ss_pred             cCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcCcCcCHHHHhcc-C----hhhHHHHH
Confidence            488999999999   569999999999999999999999999 99999999999999999987642 1    11122233


Q ss_pred             HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHHH
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRD  165 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~  165 (243)
                      ..+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| ...+++
T Consensus        86 ~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~ig-~~~a~~  162 (222)
T PRK05869         86 RVRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-APSGDGMARLTRAAG-PSRAKE  162 (222)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCEeecHHHHHHHhCCEEEecCC-CEEcCchhccCC-CCCccHHHHHHHHhC-HHHHHH
Confidence            45678899999999999999999999999999999999999987 899999999999 66665 679999999 999999


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++|++++|+||+++||||+++++ +++.+++.+++++++..|  |.++..+|+.++..
T Consensus       163 l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~~~~~  219 (222)
T PRK05869        163 LVFSGRFFDAEEALALGLIDEMVAP-DDVYDAAAAWARRFLDGP--PHALAAAKAGISDV  219 (222)
T ss_pred             HHHcCCCcCHHHHHHCCCCCEeeCc-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHH
Confidence            9999999999999999999999998 899999999999999999  99999999998765

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.9e-48  Score=327.72  Aligned_cols=215  Identities=27%  Similarity=0.340  Sum_probs=189.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++ |++++ +||++|.|++||+|.|++++..... ......
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~-d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~   80 (262)
T PRK08140          6 ILLAIEAGVATLTLNRPD--KLNSFTREMHRELREALDQVE-DDGAR-ALLLTGAGRGFCAGQDLADRDVTPG-GAMPDL   80 (262)
T ss_pred             EEEEeECCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHhc-CCCce-EEEEECCCCCcccCcChHHHhcccc-ccchhh
Confidence            578899999999999997  889999999999999999999 99999 9999999999999999998753210 000111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG-~  157 (262)
T PRK08140         81 GESIETFYNPLVRRLRALPLPVIAAVNGVAAGAGANLALACDIVLAARS-ASFIQAFVKIGL-VPDSGGTWFLPRLVG-M  157 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEEeccccccCC-CCCccHHHHHHHHhC-H
Confidence            1222233456888999999999999999999999999999999999988 899999999999 67765 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++....
T Consensus       158 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~  221 (262)
T PRK08140        158 ARALGLALLGEKLSAEQAEQWGLIWRVVDD-AALADEAQQLAAHLATQP--TRGLALIKQAMNASAT  221 (262)
T ss_pred             HHHHHHHHcCCCcCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 789999999999999998  9999999999986543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.9e-48  Score=327.88  Aligned_cols=214  Identities=24%  Similarity=0.359  Sum_probs=193.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.....  .....
T Consensus         5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVl~g~g~~F~~G~Dl~~~~~~~~--~~~~~   79 (260)
T PRK07511          5 LLSRREGSTLVLTLSNPG--ARNALHPDMYAAGIEALNTAERDPSIR-AVVLTGAGGFFCAGGNLNRLLENRA--KPPSV   79 (260)
T ss_pred             eEEEeECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHhccCCCeE-EEEEECCCCCcccCcCHHHHhhccc--ccchh
Confidence            578899999999999997  789999999999999999999999999 9999999999999999998754211  11223


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  156 (260)
T PRK07511         80 QAASIDGLHDWIRAIRAFPKPVIAAVEGAAAGAGFSLALACDLLVAARD-AKFVMAYVKVGL-TPDGGGSWFLARALP-R  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEeeCC-CEEeccccccCc-CCCchHHHHHHHHhC-H
Confidence            3445566788999999999999999999999999999999999999988 899999999999 67776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +.+++|+++|++++|+||+++||||+|+++ +++.+++.++++++++.|  |.++..+|+.++...
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~  219 (260)
T PRK07511        157 QLATELLLEGKPISAERLHALGVVNRLAEP-GQALAEALALADQLAAGS--PNALARIKSLIADAP  219 (260)
T ss_pred             HHHHHHHHhCCCCCHHHHHHcCCccEeeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 889999999999999998  999999999987653

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.6e-48  Score=326.61  Aligned_cols=209  Identities=25%  Similarity=0.360  Sum_probs=188.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++... +    ..
T Consensus         5 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVl~g~g~~~F~aG~Dl~~~~~~-~----~~   75 (258)
T PRK09076          5 LDLEIDGHVAILTLNNP---PANTWTADSLQALKQLVLELNADKDVY-ALVITGDGEKFFSAGADLNLFADG-D----KA   75 (258)
T ss_pred             EEEEEECCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceEeCcCHHHHhhc-C----hh
Confidence            67888999999999999   459999999999999999999999999 99999998 789999999987541 1    11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        76 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-  152 (258)
T PRK09076         76 VAREMARRFGEAFEALSAFRGVSIAAINGYAMGGGLECALACDIRIAEEQ-AQMALPEASVGL-LPCAGGTQNLPWLVG-  152 (258)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEecCC-CEeeCcccccCC-CCCccHHHHHHHHhC-
Confidence            12233455677889999999999999999999999999999999999987 899999999999 67765 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++..
T Consensus       153 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  215 (258)
T PRK09076        153 EGWAKRMILCGERVDAATALRIGLVEEVVEK-GEAREAALALAQKVANQS--PSAVAACKTLIQAA  215 (258)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCceecCc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998 889999999999999999  99999999998764

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.4e-48  Score=327.90  Aligned_cols=212  Identities=20%  Similarity=0.273  Sum_probs=189.8

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||+||.|++||+|.|++++.....   +..
T Consensus        13 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~---~~~   86 (268)
T PRK07327         13 LRFDRPPPGVLEIVLNGPG--ALNAADARMHRELADIWRDVDRDPDVR-VVLIRGEGKAFSAGGDLALVEEMAD---DFE   86 (268)
T ss_pred             EEEEecCCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhhhCCCce-EEEEECCCCCcccccCHHHHhhccC---cHH
Confidence            56777 5789999999996  789999999999999999999999999 9999999999999999998754211   122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...++...+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  163 (268)
T PRK07327         87 VRARVWREARDLVYNVINCDKPIVSAIHGPAVGAGLVAALLADISIAAKD-ARIIDGHTRLGV-AAGDHAAIVWPLLCG-  163 (268)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeehhhHHHHhCCEEEecCC-CEEeCcccccCC-CCCcchhhHHHHHhC-
Confidence            23334455677889999999999999999999999999999999999988 899999999999 56665 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+++++ +++.+++.++|+++++.|  +.++..+|+.++..
T Consensus       164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  226 (268)
T PRK07327        164 MAKAKYYLLLCEPVSGEEAERIGLVSLAVDD-DELLPKALEVAERLAAGS--QTAIRWTKYALNNW  226 (268)
T ss_pred             HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  99999999999864

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.2e-48  Score=327.78  Aligned_cols=213  Identities=22%  Similarity=0.318  Sum_probs=191.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.+++|++++ +||++|.| ++||+|.|++++.....   +.+
T Consensus        13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~FcaG~Dl~~~~~~~~---~~~   86 (269)
T PRK06127         13 LLAEKTGGLGRITFNNPA--RHNAMSLDMWEALPQALAAAEDDDAIR-VVVLTGAGEKAFVSGADISQFEESRS---DAE   86 (269)
T ss_pred             eEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecCcCHHHHhhccc---chH
Confidence            678899999999999997  889999999999999999999999999 99999998 79999999998754211   122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+......++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        87 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~LalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  163 (269)
T PRK06127         87 AVAAYEQAVEAAQAALADYAKPTIACIRGYCIGGGMGIALACDIRIAAED-SRFGIPAARLGL-GYGYDGVKNLVDLVG-  163 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEeeCC-CEeeCchhhhCC-CCCccHHHHHHHHhC-
Confidence            23344555677888999999999999999999999999999999999988 899999999999 56655 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..|  |.+++.+|+.++...
T Consensus       164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  227 (269)
T PRK06127        164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAA-DDLETALADYAATIAGNA--PLTLRAAKRAIAELL  227 (269)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999997 899999999999999998  999999999997653

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=5.2e-48  Score=327.77  Aligned_cols=209  Identities=22%  Similarity=0.303  Sum_probs=188.2

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.+++ +++|++|+||+|+  +.|++|.+++.+|.++++.+++|++++ +||++|.|++||+|.|++++...    .+. 
T Consensus         9 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~----~~~-   80 (261)
T PRK08138          9 VLLERPADGVALLRLNRPE--ARNALNMEVRQQLAEHFTELSEDPDIR-AIVLTGGEKVFAAGADIKEFATA----GAI-   80 (261)
T ss_pred             EEEEEccCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCeeCCcCHHHHhcc----chh-
Confidence            45676 6889999999997  789999999999999999999999999 99999999999999999987542    111 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                        ..+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        81 --~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  155 (261)
T PRK08138         81 --EMYLRHTERYWEAIAQCPKPVIAAVNGYALGGGCELAMHADIIVAGES-ASFGQPEIKVGL-MPGAGGTQRLVRAVG-  155 (261)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEEccEEEcHHHHHHHhCCEEEecCC-CEeeCccccccc-CCCCcHHHHHHHHhC-
Confidence              123344567888999999999999999999999999999999999987 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ...+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.++..+|+.++...
T Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  219 (261)
T PRK08138        156 KFKAMRMALTGCMVPAPEALAIGLVSEVVED-EQTLPRALELAREIARMP--PLALAQIKEVVLAGA  219 (261)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999998  999999999987653

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.8e-48  Score=325.28  Aligned_cols=209  Identities=20%  Similarity=0.238  Sum_probs=188.0

Q ss_pred             ceeeEeCC---EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch
Q 041046            2 CTLEKHGD---VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA   78 (243)
Q Consensus         2 i~~~~~~~---v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~   78 (243)
                      |.++++++   |++|+||+|+  +.|++|.+|+++|.++++.+++|++++ +||++|.|++||+|.|++++.....  . 
T Consensus         5 i~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~--~-   78 (251)
T PRK06023          5 ILVERPGAHPGVQVIRFNRPE--KKNAITRAMYATMAKALKAADADDAIR-AHVFLGTEGCFSAGNDMQDFLAAAM--G-   78 (251)
T ss_pred             EEEEeecCcCcEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcCHHHHhhccc--c-
Confidence            67788774   9999999997  889999999999999999999999999 9999999999999999998754211  1 


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      .   ..+...+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++
T Consensus        79 ~---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~  153 (251)
T PRK06023         79 G---TSFGSEILDFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCDLTFASPR-SLFRTPFVDLAL-VPEAGSSLLAPRLM  153 (251)
T ss_pred             c---hhhHHHHHHHHHHHHhCCCCEEEEeCCceecHHHHHHHhCCEEEEeCC-CEecCcccccCC-CCCchHHHHHHHHH
Confidence            1   112334567888999999999999999999999999999999999987 899999999999 78876 57899999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      | ..++++++++|++++|+||+++||||+|+|. +++.+++.+++++++..|  |.++..+|+.++..
T Consensus       154 g-~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  217 (251)
T PRK06023        154 G-HQRAFALLALGEGFSAEAAQEAGLIWKIVDE-EAVEAETLKAAEELAAKP--PQALQIARDLMRGP  217 (251)
T ss_pred             h-HHHHHHHHHhCCCCCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence            9 9999999999999999999999999999998 889999999999999999  99999999999754

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=4.9e-49  Score=323.20  Aligned_cols=212  Identities=21%  Similarity=0.299  Sum_probs=187.9

Q ss_pred             eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046            4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   83 (243)
                      ...+++|+.|+||||+  ..|+++..++.+|.++|..+++|++++ ++|+||.|+.||+|.|++++.....    .+.. 
T Consensus        41 ~~~d~~I~lItlNRP~--~~Nal~~~~m~eL~~A~~~~e~D~s~~-viVltG~gksFcsG~Dl~e~~~~~~----~~~~-  112 (290)
T KOG1680|consen   41 VGEDNGIALITLNRPK--ALNALCRATMLELAEAFKDFESDDSVG-VIVLTGSGKSFCSGADLKEMKKDEF----QDVS-  112 (290)
T ss_pred             eecCCCeEEEEeCChH--HhccccHHHHHHHHHHHHHhhccCccc-EEEEEcCCCccccccCHHHHhhccc----cccc-
Confidence            4456789999999997  899999999999999999999999999 9999999999999999999876321    1111 


Q ss_pred             HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHH
Q 041046           84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATA  162 (243)
Q Consensus        84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~  162 (243)
                        ...+.+.+..+.+.+||+|+++||+|+|||+||+++||+|||+++ +.|++|+.++|+ +|.+| +++|++.+| .++
T Consensus       113 --~~~~~~~~~~~~~~~KPvIaainG~AlgGG~ELalmCDirva~~~-Akfg~~~~~~Gi-~p~~GGT~rl~r~vG-~s~  187 (290)
T KOG1680|consen  113 --DGIFLRVWDLVSRLKKPVIAAINGFALGGGLELALMCDIRVAGEG-AKFGFFEIRMGI-IPSWGGTQRLPRIVG-KSR  187 (290)
T ss_pred             --cccccchhhhhhhcccceeEeeeceeeccchhhhhhcceEeccCC-CeecccccccCC-ccCCCchhhHHHHhC-hHH
Confidence              111334444555899999999999999999999999999999987 899999999999 78776 789999999 999


Q ss_pred             HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      |+++++||++++|+||+++||||+|+|. +++..+|.++++++++.|  +.++...|..++......+.
T Consensus       188 Ale~~ltg~~~~AqeA~~~GlVn~Vvp~-~~~l~eAv~l~~~Ia~~~--~~~v~~~K~svn~~~e~~l~  253 (290)
T KOG1680|consen  188 ALEMILTGRRLGAQEAKKIGLVNKVVPS-GDALGEAVKLAEQIAKNS--PLVVRADKESVNAAYETTLF  253 (290)
T ss_pred             HHHHHHhcCcccHHHHHhCCceeEeecc-hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhhccHH
Confidence            9999999999999999999999999999 889999999999999999  99999999999986555444

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=100.00  E-value=3.4e-48  Score=326.20  Aligned_cols=215  Identities=29%  Similarity=0.454  Sum_probs=199.2

Q ss_pred             eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHH
Q 041046            3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERL   82 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~   82 (243)
                      .++++++|++|+||+|+  +.|++|.+++++|.++++.+++|++++ +||++|.+++||+|.|++++...     +.+..
T Consensus         1 ~~~~~~~v~~i~ln~p~--~~N~l~~~~~~~l~~~l~~~~~d~~v~-vvv~~~~~~~F~~G~Dl~~~~~~-----~~~~~   72 (245)
T PF00378_consen    1 KYEIEDGVATITLNRPE--KRNALNPEMLDELEEALDEAEADPDVK-VVVISGGGKAFCAGADLKEFLNS-----DEEEA   72 (245)
T ss_dssp             EEEEETTEEEEEEECGG--GTTEBSHHHHHHHHHHHHHHHHSTTES-EEEEEESTSESBESB-HHHHHHH-----HHHHH
T ss_pred             CEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhcCCcc-EEEEeecccccccccchhhhhcc-----ccccc
Confidence            47899999999999998  899999999999999999999999999 99999999999999999998863     35667


Q ss_pred             HHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHH
Q 041046           83 LYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSAT  161 (243)
Q Consensus        83 ~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~  161 (243)
                      .++...+++++.++.++|||+||+|||+|+|+|++++++||+||++++ +.|++||+++|+ +|++| +.++++++| ..
T Consensus        73 ~~~~~~~~~l~~~l~~~~kp~Iaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~r~~g-~~  149 (245)
T PF00378_consen   73 REFFRRFQELLSRLANFPKPTIAAVNGHAVGGGFELALACDFRIAAED-AKFGFPEVRLGI-FPGAGGTFRLPRLIG-PS  149 (245)
T ss_dssp             HHHHHHHHHHHHHHHHSSSEEEEEESSEEETHHHHHHHHSSEEEEETT-TEEETGGGGGTS-SSTSTHHHHHHHHHH-HH
T ss_pred             cccchhhccccccchhhhhheeecccccccccccccccccceEEeecc-cceeeeecccCc-ccccccccccceeee-cc
Confidence            788889999999999999999999999999999999999999999998 789999999999 67654 789999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      .+++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.++..+|+.+++.+...++
T Consensus       150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~~~  216 (245)
T PF00378_consen  150 RARELLLTGEPISAEEALELGLVDEVVPD-EELDEEALELAKRLAAKP--PSALRATKKALNRALEQSLE  216 (245)
T ss_dssp             HHHHHHHHTCEEEHHHHHHTTSSSEEESG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHSHHH
T ss_pred             cccccccccccchhHHHHhhcceeEEcCc-hhhhHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999999999999999 669999999999999999  99999999999987544433

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=100.00  E-value=1.6e-47  Score=324.70  Aligned_cols=211  Identities=23%  Similarity=0.327  Sum_probs=191.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++... .    ..
T Consensus         6 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~v~-~vvl~g~g~~~F~aG~Dl~~~~~~-~----~~   77 (260)
T PRK05809          6 VILEKEGHIAVVTINRPK--ALNALNSETLKELDTVLDDIENDDNVY-AVILTGAGEKAFVAGADISEMKDL-N----EE   77 (260)
T ss_pred             EEEEEeCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEEcCCCCceeeCcChHhHhcc-C----hH
Confidence            567889999999999997  789999999999999999999999999 99999999 999999999987542 1    11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.....+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~va~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  154 (260)
T PRK05809         78 EGRKFGLLGNKVFRKLENLDKPVIAAINGFALGGGCELSMACDIRIASEK-AKFGQPEVGLGI-TPGFGGTQRLARIVG-  154 (260)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeecHHHHHHHhCCEEEeeCC-CEEeCcccccCC-CCCccHHHHHHHHhC-
Confidence            22334445577889999999999999999999999999999999999987 899999999999 78876 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ...+++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  218 (260)
T PRK05809        155 PGKAKELIYTGDMINAEEALRIGLVNKVVEP-EKLMEEAKALANKIAANA--PIAVKLCKDAINRGM  218 (260)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHcCCCCcccCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999997 899999999999999998  999999999998653

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.1e-47  Score=325.51  Aligned_cols=211  Identities=22%  Similarity=0.327  Sum_probs=192.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|+|++++.....    .. 
T Consensus         7 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~----~~-   78 (259)
T PRK06688          7 LLVELEDGVLTITINRPD--KKNALTAAMYQALADALEAAATDPAVR-VVVLTGAGRAFSAGGDIKDFPKAPP----KP-   78 (259)
T ss_pred             eEEEEECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCccCHHHHhccCc----ch-
Confidence            678899999999999997  889999999999999999999999999 9999999999999999998765211    11 


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                       ..+...+++++.++.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| .
T Consensus        79 -~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~  154 (259)
T PRK06688         79 -PDELAPVNRFLRAIAALPKPVVAAVNGPAVGVGVSLALACDLVYASES-AKFSLPFAKLGL-CPDAGGSALLPRLIG-R  154 (259)
T ss_pred             -HHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCcchhhHHHHHhh-H
Confidence             234556788899999999999999999999999999999999999987 899999999999 67776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..+++++++|++++|+||+++||||+++++ +++.+++.++++++++.|  +.++..+|+.++....
T Consensus       155 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~  218 (259)
T PRK06688        155 ARAAEMLLLGEPLSAEEALRIGLVNRVVPA-AELDAEADAQAAKLAAGP--ASALRYTKRAINAATL  218 (259)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999997 889999999999999998  9999999999986543

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=100.00  E-value=1.3e-47  Score=324.90  Aligned_cols=211  Identities=20%  Similarity=0.311  Sum_probs=186.2

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. .
T Consensus         4 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~   78 (259)
T TIGR01929         4 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEIIQALDDAREDPDIG-VVILTGAGDKAFCSGGDQKVRGDYGY-ID-D   78 (259)
T ss_pred             EEEEEcCCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEeCCCCceEeCcChHhHhhccc-cc-h
Confidence            46777 8999999999997  789999999999999999999999999 99999999 79999999997643101 00 1


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g  158 (243)
                      .....  ..+.+++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++|
T Consensus        79 ~~~~~--~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~~~~~~l~~~vG  154 (259)
T TIGR01929        79 SGVHR--LNVLDVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCDLTIAAEN-ARFGQTGPKVGS-FDGGYGSSYLARIVG  154 (259)
T ss_pred             hhHHH--HHHHHHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCCEEEecCC-CEecCccccccc-CCCccHHHHHHHHhH
Confidence            11111  12456788899999999999999999999999999999999987 899999999999 6655 5789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                       +.++++++++|++++|+||+++||||+|+|+ +++.+++.++|++++..|  +.+++.+|+.++..
T Consensus       155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  217 (259)
T TIGR01929       155 -QKKAREIWFLCRQYDAEQALDMGLVNTVVPL-ADLEKETVRWCREILQKS--PMAIRMLKAALNAD  217 (259)
T ss_pred             -HHHHHHHHHhCCccCHHHHHHcCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence             9999999999999999999999999999998 899999999999999999  99999999999765

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=100.00  E-value=1.6e-47  Score=327.02  Aligned_cols=216  Identities=20%  Similarity=0.317  Sum_probs=190.0

Q ss_pred             eeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--ch--
Q 041046            3 TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GA--   78 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~--   78 (243)
                      .++.+++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|+|++++.......  .+  
T Consensus        11 ~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~   87 (275)
T PLN02664         11 QKSPNSSVFHLNLNRPS--QRNALSLDFFTEFPKALSSLDQNPNVS-VIILSGAGDHFCSGIDLKTLNSISEQSSSGDRG   87 (275)
T ss_pred             EecCCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCceeeCcChHHhhhcccccccccch
Confidence            34567899999999997  889999999999999999999999999 999999999999999999875421100  00  


Q ss_pred             --HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHH
Q 041046           79 --RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA  155 (243)
Q Consensus        79 --~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~  155 (243)
                        ......+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .|++| ++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~  165 (275)
T PLN02664         88 RSGERLRRKIKFLQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDIRYCSED-AFFSVKEVDLAI-TADLGTLQRLPS  165 (275)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCEEEecCC-CEeccHHHhhCC-CCCccHHHHHHH
Confidence              1223344555677888999999999999999999999999999999999988 899999999999 67766 679999


Q ss_pred             HhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          156 KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++| ..++++++++|++++|+||+++||||+|+++.+++.+.+.+++++++..|  |.+++.+|+.++...
T Consensus       166 ~vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~~~~~a~~ia~~~--p~a~~~~K~~l~~~~  233 (275)
T PLN02664        166 IVG-YGNAMELALTGRRFSGSEAKELGLVSRVFGSKEDLDEGVRLIAEGIAAKS--PLAVTGTKAVLLRSR  233 (275)
T ss_pred             HhC-HHHHHHHHHhCCCCCHHHHHHcCCCceeeCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            999 99999999999999999999999999999854789999999999999999  999999999998653

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.2e-47  Score=325.38  Aligned_cols=211  Identities=21%  Similarity=0.353  Sum_probs=191.3

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++... .    .
T Consensus         5 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~-~----~   76 (260)
T PRK07657          5 ISVDYVTPHVVKITLNRPR--AANALSLALLEELQNILTQINEEANVR-VVILTGAGEKAFCAGADLKERAGM-N----E   76 (260)
T ss_pred             EEEEEccCCEEEEEEeCCc--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCceEcCcChHhhhcC-C----h
Confidence            56776 7899999999997  789999999999999999999999999 99999999 599999999987531 1    1


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+.+++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++|
T Consensus        77 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vG  154 (260)
T PRK07657         77 EQVRHAVSLIRTTMEMVEQLPQPVIAAINGIALGGGLELALACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG  154 (260)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEEcCEeechHHHHHHhCCEEEeeCC-CEEcCchhccCc-CCCccHHHHHHHHhC
Confidence            223445556788899999999999999999999999999999999999988 899999999999 67776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                       ...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..|  +.++..+|+.++...
T Consensus       155 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~  218 (260)
T PRK07657        155 -VGRAKELIYTGRRISAQEAKEIGLVEFVVPA-HLLEEKAIEIAEKIASNG--PIAVRQAKEAISNGI  218 (260)
T ss_pred             -HHHHHHHHHhCCCCCHHHHHHcCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence             9999999999999999999999999999998 889999999999999998  999999999998653

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.4e-47  Score=325.49  Aligned_cols=214  Identities=18%  Similarity=0.228  Sum_probs=186.1

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++.....  .+..
T Consensus         6 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~   80 (263)
T PRK07799          6 HALVEQRGHTLIVTMNRPE--ARNALSTEMLRIMVDAWDRVDNDPDIR-SCILTGAGGAFCAGMDLKAATKKPP--GDSF   80 (263)
T ss_pred             eEEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccccCHHHHhhccc--cchh
Confidence            3678899999999999997  789999999999999999999999999 9999999999999999998764211  1010


Q ss_pred             HHHHH-HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~-~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....+ ...+..+ .++..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~kpvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG  157 (263)
T PRK07799         81 KDGSYDPSRIDAL-LKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRVAGES-AKFGISEAKWSL-FPMGGSAVRLVRQIP  157 (263)
T ss_pred             hhhhhhhhHHHHH-HHHhcCCCCEEEEECCeEeccHHHHHHhCCEEEecCC-CEecCcccccCc-CCCccHHHHHHHHhC
Confidence            00001 1122333 3578999999999999999999999999999999988 899999999999 67776 679999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                       .+.+++++++|++++|+||+++||||+|+|+ +++.+++.++++++++.|  |.++..+|+.++...
T Consensus       158 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~  221 (263)
T PRK07799        158 -YTVACDLLLTGRHITAAEAKEIGLIGHVVPD-GQALDKALELAELINANG--PLAVQAILRTIRETE  221 (263)
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHcCCccEecCc-chHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHhh
Confidence             9999999999999999999999999999998 889999999999999999  999999999998653

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=324.31  Aligned_cols=209  Identities=21%  Similarity=0.357  Sum_probs=189.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++++ .|++++ +||++|.|++||+|.|++++.....    ...
T Consensus         8 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~-~d~~vr-vvvl~g~g~~F~aG~Dl~~~~~~~~----~~~   79 (260)
T PRK07659          8 VVVKYEGRVATIMLNRPE--ALNALDEPMLKELLQALKEV-AESSAH-IVVLRGNGRGFSAGGDIKMMLSSND----ESK   79 (260)
T ss_pred             EEEEeeCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHh-cCCCee-EEEEECCCCCcccccCHHHHhhccC----chh
Confidence            678899999999999997  78999999999999999999 588999 9999999999999999998764211    222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ..++...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~~pvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vg-~  156 (260)
T PRK07659         80 FDGVMNTISEIVVTLYTMPKLTISAIHGPAAGLGLSIALTADYVIADIS-AKLAMNFIGIGL-IPDGGGHFFLQKRVG-E  156 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCceecHHHHHHHhCCEEEEcCC-CEEcCchhhcCC-CCCCchhhhHHHhcC-H
Confidence            3455666788899999999999999999999999999999999999988 899999999999 67765 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..+++++++|++++|+||+++||||+++ + +++.+++.++++++++.|  +.++..+|+.++..
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv-~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  217 (260)
T PRK07659        157 NKAKQIIWEGKKLSATEALDLGLIDEVI-G-GDFQTAAKQKISEWLQKP--LKAMIETKQIYCEL  217 (260)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCChHHHh-h-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            9999999999999999999999999999 6 789999999999999998  99999999998765

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=325.35  Aligned_cols=216  Identities=25%  Similarity=0.363  Sum_probs=190.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCC-CCCeEEEEecCCCccccCCChhhHHhcccccc-hH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEA-TPGSALITTSHGKFFSNGLDLAWAQAAGSRAG-AR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~-~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~-~~   79 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|+ +++ +||++|.|++||+|.|++++........ ..
T Consensus         6 v~~~~~~~i~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~~v~-vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~   82 (266)
T PRK05981          6 VTLDFDGGVAILTLDHPE--VMNAVSIDMLGGLAEALDAIEDGKAEVR-CLVLTGAGRGFCTGANLQGRGSGGRESDSGG   82 (266)
T ss_pred             EEEEeECCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhcCCCceE-EEEEeCCCCCcccccCHHhhhcccccccccc
Confidence            678899999999999997  789999999999999999999876 499 9999999999999999998754211000 01


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||.++|+ +|++| ++++++++|
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~~e~~lG~-~p~~g~~~~l~~~vg  160 (266)
T PRK05981         83 DAGAALETAYHPFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGDLILCARS-AYFLQAFRRIGL-VPDGGSTWLLPRLVG  160 (266)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEecCC-CEEechHhhcCC-CCCccHHHHHHHHhH
Confidence            112334455678899999999999999999999999999999999999988 899999999999 78776 679999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                       +..+++++++|++++|+||+++||||+++++ +++.+++.+++++++..|  +.++..+|+.++...
T Consensus       161 -~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~  224 (266)
T PRK05981        161 -KARAMELSLLGEKLPAETALQWGLVNRVVDD-AELMAEAMKLAHELANGP--TVALGLIRKLYWDSP  224 (266)
T ss_pred             -HHHHHHHHHhCCCcCHHHHHHcCCceEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence             9999999999999999999999999999998 889999999999999998  899999999997653

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2e-47  Score=324.28  Aligned_cols=213  Identities=22%  Similarity=0.322  Sum_probs=187.3

Q ss_pred             ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.++++ ++|++|+||+|.  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... .. ..
T Consensus         6 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~~   80 (262)
T PRK07468          6 IRIAVDARGVATLTLNRPE--KHNALSARMIAELTTAARRLAADAAVR-VVVLTGAGKSFCAGGDLGWMRAQMT-AD-RA   80 (262)
T ss_pred             EEEEEcCCcEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCcccCCcCHHHHHhhcc-cc-hh
Confidence            567775 689999999997  899999999999999999999999999 9999999999999999998753211 01 11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ........+..++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+..+.+++| .
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~~~~vG-~  157 (262)
T PRK07468         81 TRIEEARRLAMMLKALNDLPKPLIGRIQGQAFGGGVGLISVCDVAIAVSG-ARFGLTETRLGL-IPATISPYVVARMG-E  157 (262)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEECCEEEhHHHHHHHhCCEEEEeCC-CEEeCchhccCC-CcccchhhHHhhcc-H
Confidence            11122344667888999999999999999999999999999999999987 899999999999 78877555667799 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++|+++|++++|+||+++||||+|++. +++.+++.++++++++.|  |.++..+|+.++..
T Consensus       158 ~~a~~lll~g~~~~a~eA~~~Glv~~v~~~-~~l~~~~~~~a~~l~~~~--~~a~~~~K~~l~~~  219 (262)
T PRK07468        158 ANARRVFMSARLFDAEEAVRLGLLSRVVPA-ERLDAAVEAEVTPYLSCA--PGAVAAAKALVRAL  219 (262)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence            999999999999999999999999999997 889999999999999998  99999999998764

>PLN02600 enoyl-CoA hydratase

Probab=100.00  E-value=1.8e-47  Score=322.61  Aligned_cols=206  Identities=23%  Similarity=0.357  Sum_probs=187.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   85 (243)
                      +++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|. |++||+|.|++++... .    ......+
T Consensus         2 ~~~v~~itlnrp~--~~Nal~~~~~~~l~~~~~~~~~d~~vr-~vVl~g~~g~~F~aG~Dl~~~~~~-~----~~~~~~~   73 (251)
T PLN02600          2 DSGIVELRLDRPE--AKNAIGKEMLRGLRSAFEKIQADASAR-VVMLRSSVPGVFCAGADLKERRKM-S----PSEVQKF   73 (251)
T ss_pred             CCcEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceeeCcCHHHHhcc-C----hHHHHHH
Confidence            4789999999997  889999999999999999999999999 9999998 5899999999987542 1    1223445


Q ss_pred             HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046           86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      ...+..++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| ...++
T Consensus        74 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~G-~~~a~  150 (251)
T PLN02600         74 VNSLRSTFSSLEALSIPTIAVVEGAALGGGLELALSCDLRICGEE-AVFGLPETGLAI-IPGAGGTQRLPRLVG-RSRAK  150 (251)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecCeecchhHHHHHhCCEEEeeCC-CEEeCcccccCc-CCCchHHHHHHHHhC-HHHHH
Confidence            566778889999999999999999999999999999999999988 899999999999 67776 689999999 99999


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +++++|++++|+||+++||||+++++ +++.+++.++|+++++.|  |.++..+|+.++...
T Consensus       151 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  209 (251)
T PLN02600        151 ELIFTGRRIGAREAASMGLVNYCVPA-GEAYEKALELAQEINQKG--PLAIKMAKKAINEGS  209 (251)
T ss_pred             HHHHhCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHc
Confidence            99999999999999999999999998 889999999999999999  999999999998653

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.2e-47  Score=315.02  Aligned_cols=215  Identities=22%  Similarity=0.329  Sum_probs=192.9

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|   +.|++|.+++++|.++++.++  ++++ +||++|.|++||+|.|++++...      ..
T Consensus         4 ~i~~~~~~~v~~itln~~---~~Nal~~~~~~~l~~~l~~~~--~~~~-vvvl~g~g~~F~~G~Dl~~~~~~------~~   71 (229)
T PRK06213          4 LVSYTLEDGVATITLDDG---KVNALSPAMIDALNAALDQAE--DDRA-VVVITGQPGIFSGGFDLKVMTSG------AQ   71 (229)
T ss_pred             eEEEEecCCEEEEEeCCC---CCCCCCHHHHHHHHHHHHHhh--ccCc-EEEEeCCCCceEcCcCHHHHhcc------hH
Confidence            367889999999999998   789999999999999999998  4568 99999999999999999987541      22


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ...++...+.+++.++.++||||||+|||+|+|+|++++++||+||++++.++|++||+++|+++|.++..++++++| .
T Consensus        72 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D~rva~~~~a~f~~pe~~~Gl~~~~~~~~~l~~~~g-~  150 (229)
T PRK06213         72 AAIALLTAGSTLARRLLSHPKPVIVACTGHAIAKGAFLLLSADYRIGVHGPFKIGLNEVAIGMTMPHAAIELARDRLT-P  150 (229)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCCeeeEecCCcEEECchhhhCCcCChHHHHHHHHHcC-H
Confidence            233455667788999999999999999999999999999999999999875789999999999556667788999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.++..+|+.++....+.++
T Consensus       151 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  218 (229)
T PRK06213        151 SAFQRAVINAEMFDPEEAVAAGFLDEVVPP-EQLLARAQAAARELAGLN--MGAHAATKLKVRAAALEAIR  218 (229)
T ss_pred             HHHHHHHHcCcccCHHHHHHCCCceeccCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997 889999999999999998  99999999999988766665

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.6e-47  Score=320.46  Aligned_cols=213  Identities=21%  Similarity=0.314  Sum_probs=190.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|++||+|.|++++.....  . .  
T Consensus         7 ~~~~~~~~v~~i~ln~p~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~-~--   78 (249)
T PRK07110          7 ELREVEEGIAQVTMQDRV--NKNAFSDELCDQLHEAFDTIAQDPRYK-VVILTGYPNYFATGGTQEGLLSLQT--G-K--   78 (249)
T ss_pred             EEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCcChHHHhhccc--h-h--
Confidence            568889999999999997  889999999999999999999999999 9999999999999999998764211  1 1  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                       ..+..  ++++..+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|++| ++++++++| .
T Consensus        79 -~~~~~--~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~~g-~  152 (249)
T PRK07110         79 -GTFTE--ANLYSLALNCPIPVIAAMQGHAIGGGLVLGLYADIVVLSRE-SVYTANFMKYGF-TPGMGATAILPEKLG-L  152 (249)
T ss_pred             -hhHhh--HHHHHHHHcCCCCEEEEecCceechHHHHHHhCCEEEEeCC-CEecCchhccCC-CCCchHHHHHHHHhC-H
Confidence             11111  57888999999999999999999999999999999999988 899999999999 67776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..+++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.++..+|+.++......++
T Consensus       153 ~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  220 (249)
T PRK07110        153 ALGQEMLLTARYYRGAELKKRGVPFPVLPR-AEVLEKALELARSLAEKP--RHSLVLLKDHLVADRRRRLP  220 (249)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCeEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccHH
Confidence            999999999999999999999999999997 889999999999999999  99999999999866544433

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.9e-47  Score=322.01  Aligned_cols=206  Identities=21%  Similarity=0.291  Sum_probs=183.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++...   +. ...
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~---~~-~~~   77 (254)
T PRK08252          5 VLVERRGRVLIITINRPE--ARNAVNAAVAQGLAAALDELDADPDLS-VGILTGAGGTFCAGMDLKAFARG---ER-PSI   77 (254)
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCceEcCcCHHHHhcc---cc-hhh
Confidence            678999999999999997  789999999999999999999999999 99999999999999999987642   11 111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ..   ..+..++.  ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        78 ~~---~~~~~~~~--~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-~  149 (254)
T PRK08252         78 PG---RGFGGLTE--RPPRKPLIAAVEGYALAGGFELALACDLIVAARD-AKFGLPEVKRGL-VAAGGGLLRLPRRIP-Y  149 (254)
T ss_pred             hH---HHHHHHHH--hcCCCCEEEEECCEEehHHHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchHHHHHHHHcC-H
Confidence            11   11222222  4799999999999999999999999999999988 899999999999 67765 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  +.++..+|+.++..
T Consensus       150 ~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  211 (254)
T PRK08252        150 HIAMELALTGDMLTAERAHELGLVNRLTEP-GQALDAALELAERIAANG--PLAVAASKRIVVES  211 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceecCc-chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 899999999999999999  99999999999865

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3e-47  Score=325.47  Aligned_cols=216  Identities=22%  Similarity=0.320  Sum_probs=188.4

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--ch
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GA   78 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~   78 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++.......  .+
T Consensus        11 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   87 (276)
T PRK05864         11 VLVDHPRPEIALITLNRPE--RMNSMAFDVMVPLKEALAEVSYDNSVR-VVVLTGAGRGFSSGADHKSAGVVPHVEGLTR   87 (276)
T ss_pred             eEEeeecCCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeecCcchhhhhcccccccccc
Confidence            56776 7899999999997  789999999999999999999999999 999999999999999999864311000  01


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ..........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl~p~~~g~~~~l~~~v  166 (276)
T PRK05864         88 PTYALRSMELLDDVILALRRLHQPVIAAVNGPAIGGGLCLALAADIRVASSS-AYFRAAGINNGLTASELGLSYLLPRAI  166 (276)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhHHHHHHhCCEEEeeCC-CEecCcccccCCCCCCcchheehHhhh
Confidence            1111223445677888999999999999999999999999999999999988 899999999999433666 57899999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      | ...+++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++..
T Consensus       167 G-~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~  230 (276)
T PRK05864        167 G-SSRAFEIMLTGRDVDAEEAERIGLVSRQVPD-EQLLDTCYAIAARMAGFS--RPGIELTKRTLWSG  230 (276)
T ss_pred             C-HHHHHHHHHcCCccCHHHHHHcCCcceeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            9 9999999999999999999999999999998 899999999999999999  99999999998754

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.8e-47  Score=322.39  Aligned_cols=209  Identities=26%  Similarity=0.301  Sum_probs=187.3

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++..... .. .  
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~-~~-~--   77 (249)
T PRK05870          5 VLLDVDDGVALITVNDPD--RRNAVTAEMSAQLRAAVAAAEADPDVH-ALVVTGAGKAFCAGADLTALGAAPG-RP-A--   77 (249)
T ss_pred             EEEEccCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCeecCcChHHHhcccc-cc-h--
Confidence            578889999999999997  889999999999999999999999999 9999999999999999998764211 11 1  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                       .+....+.+++..+.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 -~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-~  153 (249)
T PRK05870         78 -EDGLRRIYDGFLAVASCPLPTIAAVNGAAVGAGLNLALAADVRIAGPK-ALFDARFQKLGL-HPGGGATWMLQRAVG-P  153 (249)
T ss_pred             -HHHHHHHHHHHHHHHhCCCCEEEEECCEeEchhHHHHHhCCEEEEcCC-CEEeCcccccCc-CCCCcceeeHHhhhC-H
Confidence             222344566777899999999999999999999999999999999988 899999999999 67776 578999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+++   +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       154 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv---~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~  214 (249)
T PRK05870        154 QVARAALLFGMRFDAEAAVRHGLALMVA---DDPVAAALELAAGPAAAP--RELVLATKASMRATA  214 (249)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCHHHHH---hhHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999   469999999999999999  999999999998653

>PLN02888 enoyl-CoA hydratase

Probab=100.00  E-value=3.4e-47  Score=323.13  Aligned_cols=208  Identities=21%  Similarity=0.333  Sum_probs=185.8

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|+|++++.....  .  .
T Consensus        11 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~--~   83 (265)
T PLN02888         11 ILVPKSRNGIATITINRPK--ALNALTRPMMVELAAAFKRLDEDDSVK-VIILTGSGRAFCSGVDLTAAEEVFK--G--D   83 (265)
T ss_pred             EEEEeccCCEEEEEEcCCC--cccCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCcccCCCCHHHHHhhcc--c--h
Confidence            56675 6899999999996  789999999999999999999999999 9999999999999999998653211  1  1


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                       .   .....+++..+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        84 -~---~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  156 (265)
T PLN02888         84 -V---KDVETDPVAQMERCRKPIIGAINGFAITAGFEIALACDILVASRG-AKFIDTHAKFGI-FPSWGLSQKLSRIIG-  156 (265)
T ss_pred             -h---hHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEecCC-CEecCccccccC-CCCccHhhHHHHHhC-
Confidence             1   112345677889999999999999999999999999999999988 899999999999 67776 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..+  +.+++.+|+.++...
T Consensus       157 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  220 (265)
T PLN02888        157 ANRAREVSLTAMPLTAETAERWGLVNHVVEE-SELLKKAREVAEAIIKNN--QGMVLRYKSVINDGL  220 (265)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCccEeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999998  999999999998654

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=100.00  E-value=6.8e-47  Score=323.15  Aligned_cols=218  Identities=17%  Similarity=0.289  Sum_probs=191.1

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC--CccccCCChhhHHhcccccch
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG--KFFSNGLDLAWAQAAGSRAGA   78 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g--~~F~~G~dl~~~~~~~~~~~~   78 (243)
                      |.+++ +++|++|+||+|   +.|++|.+++.+|.++++++++|++++ +||+||.|  ++||+|.|++++.....  . 
T Consensus        13 i~~~~~~~~Va~itlnr~---~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~~~FcaG~Dl~~~~~~~~--~-   85 (278)
T PLN03214         13 VRVDRRPGGIAVVWLAKE---PVNSMTLAMWRSLDDALTALENDPTVR-GVVFASGLRRDVFTAGNDIAELYAPKT--S-   85 (278)
T ss_pred             eEEEEcCCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCce-EEEEeCCCCCCcccCccCHHHHhcccc--c-
Confidence            67788 689999999998   789999999999999999999999999 99999987  79999999998753111  1 


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ......+.....+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+++|++| ++++++++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl~~p~~~~~~~l~~~~  164 (278)
T PLN03214         86 AARYAEFWLTQTTFLVRLLRSRLATVCAIRGACPAGGCAVSLCCDYRLQTTE-GTMGLNEVALGIPVPKFWARLFMGRVI  164 (278)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCcccchHHHHHHhCCEEEecCC-CEecCcHHHhCCCCCChhHHHHHHHhc
Confidence            1222233334466788899999999999999999999999999999999987 899999999999547665 68999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      | ..++++++++|+.++|+||+++||||+|+++ +++.+.+.+++++++..|  +.++..+|+.++......++
T Consensus       165 G-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~~~~~l~  234 (278)
T PLN03214        165 D-RKVAESLLLRGRLVRPAEAKQLGLIDEVVPA-AALMEAAASAMERALKLP--SAARAATKALLREEFSAAWE  234 (278)
T ss_pred             C-HHHHHHHHHcCCccCHHHHHHcCCCcEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhHHHHHH
Confidence            9 9999999999999999999999999999998 899999999999999998  99999999999877554433

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.5e-47  Score=327.97  Aligned_cols=215  Identities=20%  Similarity=0.230  Sum_probs=189.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc-----
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA-----   76 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~-----   76 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++.......     
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   82 (296)
T PRK08260          6 IRYDVADGIATITLNRPD--KLNAFTVTMARELIEAFDAADADDAVR-AVIVTGAGRAFCAGADLSAGGNTFDLDAPRTP   82 (296)
T ss_pred             EEEeeeCCEEEEEeCCCc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCCeecCcChHHhhhcccccccccc
Confidence            578889999999999997  889999999999999999999999999 999999999999999999865310000     


Q ss_pred             -------chHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh
Q 041046           77 -------GARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF  149 (243)
Q Consensus        77 -------~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g  149 (243)
                             ........+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g  160 (296)
T PRK08260         83 VEADEEDRADPSDDGVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDIRLASTA-ARFGFVFGRRGI-VPEAA  160 (296)
T ss_pred             cccccccccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCEEEeeCC-CEEecchhhcCc-CCCcc
Confidence                   001111223344567888999999999999999999999999999999999988 899999999999 78876


Q ss_pred             -HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhH
Q 041046          150 -TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~  225 (243)
                       ++++++++| ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++.. |  +.++..+|+.++..
T Consensus       161 ~~~~l~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~i~~~~~--~~a~~~~K~~l~~~  234 (296)
T PRK08260        161 SSWFLPRLVG-LQTALEWVYSGRVFDAQEALDGGLVRSVHPP-DELLPAARALAREIADNTS--PVSVALTRQMMWRM  234 (296)
T ss_pred             hhhhHHHhhC-HHHHHHHHHcCCccCHHHHHHCCCceeecCH-HHHHHHHHHHHHHHHhcCC--hHHHHHHHHHHHhc
Confidence             579999999 9999999999999999999999999999998 88999999999999985 7  89999999999765

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.7e-47  Score=321.99  Aligned_cols=208  Identities=22%  Similarity=0.242  Sum_probs=182.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++.....    .. 
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvltg~g~~FcaG~Dl~~~~~~~~----~~-   76 (254)
T PRK08259          5 VRVERNGPVTTVILNRPE--VRNAVDGPTAAALADAFRAFDADDAAS-VAVLWGAGGTFCAGADLKAVGTGRG----NR-   76 (254)
T ss_pred             EEEEEECCEEEEEecCCc--cccCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcChHHHhcccc----hh-
Confidence            578899999999999997  789999999999999999999999999 9999999999999999998754211    11 


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ....  ........+.++|||+||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|.+| ++++++++| .
T Consensus        77 ~~~~--~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~iG-~  151 (254)
T PRK08259         77 LHPS--GDGPMGPSRMRLSKPVIAAVSGYAVAGGLELALWCDLRVAEED-AVFGVFCRRWGV-PLIDGGTVRLPRLIG-H  151 (254)
T ss_pred             hhhh--hcchhhhHHhcCCCCEEEEECCEEEhHHHHHHHhCCEEEecCC-CEecCcccccCC-CCCccHHHHHHHHhC-H
Confidence            1110  0111222334799999999999999999999999999999988 899999999999 56655 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|+.++|+||+++||||+|+|+ +++.+++.++|+++++.|  +.++..+|+.++..
T Consensus       152 ~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~  213 (254)
T PRK08259        152 SRAMDLILTGRPVDADEALAIGLANRVVPK-GQARAAAEELAAELAAFP--QTCLRADRLSALEQ  213 (254)
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCCCEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            999999999999999999999999999998 899999999999999999  99999999999765

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=3.9e-47  Score=322.02  Aligned_cols=207  Identities=23%  Similarity=0.310  Sum_probs=183.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++.....  . ..
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~F~aG~Dl~~~~~~~~--~-~~   79 (259)
T PRK06494          6 STVERKGHVTIVTLNRPE--VMNALHLDAHFELEEVFDDFAADPEQW-VAIVTGAGDKAFSAGNDLKEQAAGGK--R-GW   79 (259)
T ss_pred             eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEEcCCCCceeccccHHhHhhcCc--c-hh
Confidence            678899999999999996  789999999999999999999999999 99999998 79999999998754211  0 11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ..    ..+..+. .+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        80 ~~----~~~~~~~-~~~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vg-  151 (259)
T PRK06494         80 PE----SGFGGLT-SRFDLDKPIIAAVNGVAMGGGFELALACDLIVAAEN-ATFALPEPRVGL-AALAGGLHRLPRQIG-  151 (259)
T ss_pred             hh----HHHHHHH-HHhcCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCchHHHHHHHHcC-
Confidence            11    1122333 346899999999999999999999999999999988 899999999999 67765 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ...+++++++|++++|+||+++||||+++++ +++.+++.+++++++..|  +.++..+|+.++..
T Consensus       152 ~~~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  214 (259)
T PRK06494        152 LKRAMGMILTGRRVTAREGLELGFVNEVVPA-GELLAAAERWADDILACS--PLSIRASKQAVYRG  214 (259)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  99999999998765

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=100.00  E-value=5.5e-47  Score=321.32  Aligned_cols=208  Identities=17%  Similarity=0.319  Sum_probs=186.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--CCccccCCChhhHHhcccccchH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--g~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      +.++++++|++||||+|+  +.|++|.+++++|.+++++++.|+ ++ +||++|.  |++||+|.|++++.....  . .
T Consensus         6 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~-v~-~vvltg~~~~~~FcaG~Dl~~~~~~~~--~-~   78 (261)
T PRK11423          6 VNVVTINKIATITFNNPA--KRNALSKVLIDDLMQALSDLNRPE-IR-VVILRAPSGSKVWSAGHDIHELPSGGR--D-P   78 (261)
T ss_pred             eEEEeECCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCC-ce-EEEEECCCCCCeeECCcCHHHHhhccc--c-H
Confidence            678899999999999997  789999999999999999999887 99 9999986  389999999998753211  1 1


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g  158 (243)
                         ..+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ |+.++++++|
T Consensus        79 ---~~~~~~~~~l~~~i~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~~~g~~~~l~~~vg  153 (261)
T PRK11423         79 ---LSYDDPLRQILRMIQKFPKPVIAMVEGSVWGGAFELIMSCDLIIAAST-STFAMTPANLGV-PYNLSGILNFTNDAG  153 (261)
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEEecEEechHHHHHHhCCEEEecCC-CEecCchhhcCC-CCCccHHHHHHHHhH
Confidence               123445677889999999999999999999999999999999999988 899999999999 5555 5789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+.+.++++++++.|  |.+++.+|+.++..
T Consensus       154 -~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~  216 (261)
T PRK11423        154 -FHIVKEMFFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEQLRVL  216 (261)
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhh
Confidence             9999999999999999999999999999997 899999999999999998  99999999999753

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=100.00  E-value=5e-47  Score=321.72  Aligned_cols=209  Identities=21%  Similarity=0.335  Sum_probs=186.0

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.+++++++.|++++ +||++|.| ++||+|.|++++.....  . ..
T Consensus         5 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vvl~g~g~~~F~aG~Dl~~~~~~~~--~-~~   77 (261)
T PRK03580          5 LHTTRNGSILEITLDRP---KANAIDAKTSFAMGEVFLNFRDDPELR-VAIITGAGEKFFSAGWDLKAAAEGEA--P-DA   77 (261)
T ss_pred             EEEEEECCEEEEEECCc---cccCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEeCCCCceecccCHHHHhccCc--c-hh
Confidence            67889999999999999   669999999999999999999999999 99999998 79999999998754211  1 11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                         .+.......+.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +.++++++| 
T Consensus        78 ---~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~vg-  151 (261)
T PRK03580         78 ---DFGPGGFAGLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADN-ASFALPEAKLGI-VPDSGGVLRLPKRLP-  151 (261)
T ss_pred             ---hhhhhhhHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEecCC-CEEeCcccccCc-CCCccHHHHHHHHhC-
Confidence               11112244677889999999999999999999999999999999987 899999999999 67766 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ...+++++++|++++|+||+++||||+|++. +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       152 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  215 (261)
T PRK03580        152 PAIANEMVMTGRRMDAEEALRWGIVNRVVPQ-AELMDRARELAQQLVNSA--PLAIAALKEIYRETS  215 (261)
T ss_pred             HHHHHHHHHhCCccCHHHHHHcCCCcEecCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999997 899999999999999999  999999999997653

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.3e-47  Score=320.04  Aligned_cols=209  Identities=22%  Similarity=0.285  Sum_probs=187.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..... .  ...
T Consensus         6 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~-~--~~~   78 (257)
T PRK06495          6 LKLEVSDHVAVVTLDNP---PVNALSRELRDELIAVFDEISERPDVR-VVVLTGAGKVFCAGADLKGRPDVIK-G--PGD   78 (257)
T ss_pred             EEEEeeCCEEEEEECCC---ccccCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcCHHhHhhccC-C--chh
Confidence            57888999999999999   569999999999999999999999999 9999999999999999998754211 1  122


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ .  ++..++++++| ..
T Consensus        79 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~--~~~~~l~~~~g-~~  153 (257)
T PRK06495         79 LRAHNRRTRECFHAIRECAKPVIAAVNGPALGAGLGLVASCDIIVASEN-AVFGLPEIDVGL-A--GGGKHAMRLFG-HS  153 (257)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEecCC-CEeeChhhccCc-c--ccHHHHHHHhC-HH
Confidence            2334455677888999999999999999999999999999999999988 899999999999 4  44678999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++|+++|++++|+||+++||||+++++ +++.+++.++++++++.|  |.++..+|+.++..
T Consensus       154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~-~~~~~~a~~~a~~l~~~~--~~a~~~~K~~l~~~  214 (257)
T PRK06495        154 LTRRMMLTGYRVPAAELYRRGVIEACLPP-EELMPEAMEIAREIASKS--PLATRLAKDALNTI  214 (257)
T ss_pred             HHHHHHHcCCeeCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            99999999999999999999999999997 889999999999999999  99999999999865

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=100.00  E-value=7e-47  Score=318.85  Aligned_cols=206  Identities=21%  Similarity=0.340  Sum_probs=182.3

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++..       . .
T Consensus         3 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~~~~vr-~vVl~g~g~~FcaG~Dl~~~~~-------~-~   70 (251)
T TIGR03189         3 VWLERDGKLLRLRLARP---KANIVDAAMIAALSAALGEHLEDSALR-AVLLDAEGPHFSFGASVAEHMP-------D-Q   70 (251)
T ss_pred             EEEEeeCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHHcCCCce-EEEEECCCCceecCcChhhhCc-------h-h
Confidence            56788999999999999   569999999999999999999999999 9999999999999999997532       1 1


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+.+++.++.++||||||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|+++++++++++| ..
T Consensus        71 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~  147 (251)
T TIGR03189        71 CAAMLASLHKLVIAMLDSPVPILVAVRGQCLGGGLEVAAAGNLMFAAPD-AKLGQPEIVLGV-FAPAASCLLPERMG-RV  147 (251)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCeeeeHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhC-HH
Confidence            1223344567888999999999999999999999999999999999988 899999999999 67677889999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHH-HHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL-AKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~-a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .+++++++|++++|+||+++||||+|+++ ++  +++.++ +++++..|  |.++..+|+.++....
T Consensus       148 ~a~~l~ltg~~~~a~eA~~~Glv~~v~~~-~~--~~a~~~~a~~la~~~--p~a~~~~K~~l~~~~~  209 (251)
T TIGR03189       148 AAEDLLYSGRSIDGAEGARIGLANAVAED-PE--NAALAWFDEHPAKLS--ASSLRFAVRAARLGMN  209 (251)
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCc-HH--HHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999986 33  466666 68999999  9999999999876543

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.2e-47  Score=318.93  Aligned_cols=205  Identities=21%  Similarity=0.288  Sum_probs=183.5

Q ss_pred             eEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHH
Q 041046            5 EKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY   84 (243)
Q Consensus         5 ~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   84 (243)
                      +++++|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++...   +. ......
T Consensus         7 ~~~~~v~~itlnrp---~~Nal~~~~~~~l~~~l~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~---~~-~~~~~~   78 (249)
T PRK07938          7 TPEPGIAEVTVDYP---PVNALPSAGWFALADAITAAGADPDTR-VVVLRAEGRGFNAGVDIKELQAT---PG-FTALID   78 (249)
T ss_pred             ccCCCEEEEEECCC---CcccCCHHHHHHHHHHHHHhhcCCCeE-EEEEECCCCceecCcCHHHHhhc---cc-hhHHHH
Confidence            45789999999999   569999999999999999999999999 99999999999999999987541   11 122222


Q ss_pred             HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHH
Q 041046           85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARR  164 (243)
Q Consensus        85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~  164 (243)
                      ....+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +  +++.++++++| ...++
T Consensus        79 ~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD~ria~~~-a~f~~pe~~~G~-~--g~~~~l~~~vg-~~~a~  153 (249)
T PRK07938         79 ANRGCFAAFRAVYECAVPVIAAVHGFCLGGGIGLVGNADVIVASDD-ATFGLPEVDRGA-L--GAATHLQRLVP-QHLMR  153 (249)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEcCEEeehHHHHHHhCCEEEEeCC-CEeeCccceecC-c--hhHHHHHHhcC-HHHHH
Confidence            3344567888999999999999999999999999999999999988 899999999999 4  44678999999 99999


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      +++++|++++|+||+++||||+|+|+ +++.+++.+++++++..|  +.++..+|+.++..
T Consensus       154 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  211 (249)
T PRK07938        154 ALFFTAATITAAELHHFGSVEEVVPR-DQLDEAALEVARKIAAKD--TRVIRAAKEALNGI  211 (249)
T ss_pred             HHHHhCCcCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            99999999999999999999999997 899999999999999998  99999999999765

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=100.00  E-value=9e-47  Score=321.95  Aligned_cols=211  Identities=19%  Similarity=0.316  Sum_probs=186.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... .. ..
T Consensus        15 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~-~~   89 (273)
T PRK07396         15 ILYKSADGIAKITINRPE--VRNAFRPKTVKEMIDAFADARDDDNIG-VIILTGAGDKAFCSGGDQKVRGYGGY-VD-DD   89 (273)
T ss_pred             eEEEecCCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEeCCCCceEeCcChhhhhcccc-cc-hh
Confidence            578889999999999997  789999999999999999999999999 99999998 69999999998643100 01 11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~g~  159 (243)
                      ....+  ...+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++ ++.++++++| 
T Consensus        90 ~~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~vG-  164 (273)
T PRK07396         90 GVPRL--NVLDLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGS-FDGGYGASYLARIVG-  164 (273)
T ss_pred             hhhhh--HHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEeeCC-cEEecccccccc-cCCchHHHHHHHHhh-
Confidence            11111  1345777899999999999999999999999999999999988 899999999999 6665 4789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|+.++|+||+++||||+|+|+ +++.+++.++|++++..|  |.++..+|+.++..
T Consensus       165 ~~~a~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  227 (273)
T PRK07396        165 QKKAREIWFLCRQYDAQEALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNAD  227 (273)
T ss_pred             HHHHHHHHHhCCCcCHHHHHHcCCcCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            9999999999999999999999999999997 899999999999999999  99999999999765

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=6.9e-47  Score=322.79  Aligned_cols=216  Identities=24%  Similarity=0.319  Sum_probs=187.7

Q ss_pred             ceeeEeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch-H
Q 041046            2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA-R   79 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~-~   79 (243)
                      |.+++++ +|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++......+.. .
T Consensus         7 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~   83 (272)
T PRK06210          7 VLYEVADSGVAVITLNRPD--RLNAWTPVMEAEVYAAMDRAEADPAVR-VIVLTGAGRGFCAGADMGELQTIDPSDGRRD   83 (272)
T ss_pred             EEEEECCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHhccCCCee-EEEEECCCCCcccccCHHHHhccCccccccc
Confidence            5788888 99999999997  889999999999999999999999999 99999999999999999987542110000 0


Q ss_pred             ----HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHH
Q 041046           80 ----ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR  154 (243)
Q Consensus        80 ----~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~  154 (243)
                          .........+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +.+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~  161 (272)
T PRK06210         84 TDVRPFVGNRRPDYQTRYHFLTALRKPVIAAINGACAGIGLTHALMCDVRFAADG-AKFTTAFARRGL-IAEHGISWILP  161 (272)
T ss_pred             ccchhhhhhhhhhHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEeCC-CEEechHHhcCC-CCCCchhhhhH
Confidence                000111112456678899999999999999999999999999999999988 899999999999 78876 67899


Q ss_pred             HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhHH
Q 041046          155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~~  226 (243)
                      +++| ..++++|+++|++++|++|+++||||+++++ +++.+++.++++++++. |  |.++..+|+.++...
T Consensus       162 ~~ig-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~~--p~a~~~~K~~l~~~~  230 (272)
T PRK06210        162 RLVG-HANALDLLLSARTFYAEEALRLGLVNRVVPP-DELMERTLAYAEDLARNVS--PASMAVIKRQLYEDA  230 (272)
T ss_pred             hhhC-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhcc
Confidence            9999 9999999999999999999999999999998 88999999999999985 7  999999999998653

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1.5e-46  Score=322.59  Aligned_cols=216  Identities=21%  Similarity=0.332  Sum_probs=188.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccc------
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSR------   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~------   75 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||+||.|++||+|.|++++......      
T Consensus         6 v~~~~~~~Va~ItlnrP~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-vvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~   82 (288)
T PRK08290          6 VRYEVAGRIARITLNRPE--ARNAQNRQMLYELDAAFRRAEADDAVR-VIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQ   82 (288)
T ss_pred             EEEEeeCCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCccccCCCcccccccccccccccc
Confidence            678899999999999997  789999999999999999999999999 99999999999999999976321000      


Q ss_pred             -----------cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCC
Q 041046           76 -----------AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT  144 (243)
Q Consensus        76 -----------~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~  144 (243)
                                 +............+.+++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~ria~e~-a~f~~pe~~lGl-  160 (288)
T PRK08290         83 HPTLWWDGATKPGVEQRYAREWEVYLGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDLIVASDD-AFFSDPVVRMGI-  160 (288)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCEEEeeCC-CEecCcccccCc-
Confidence                       0001112222334567788899999999999999999999999999999999988 899999999998 


Q ss_pred             CchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046          145 LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP  224 (243)
Q Consensus       145 ~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~  224 (243)
                       |+.+..++++++| ..+++++++||+.++|+||+++||||+++++ +++.+++.++++++++.|  +.++..+|+.++.
T Consensus       161 -~~~~~~~l~~~iG-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~  235 (288)
T PRK08290        161 -PGVEYFAHPWELG-PRKAKELLFTGDRLTADEAHRLGMVNRVVPR-DELEAETLELARRIAAMP--PFGLRLTKRAVNQ  235 (288)
T ss_pred             -CcchHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHH
Confidence             3456677899999 9999999999999999999999999999998 889999999999999999  9999999999987


Q ss_pred             HHH
Q 041046          225 DLC  227 (243)
Q Consensus       225 ~~~  227 (243)
                      ...
T Consensus       236 ~~~  238 (288)
T PRK08290        236 TLD  238 (288)
T ss_pred             HHh
Confidence            644

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=100.00  E-value=1.2e-46  Score=318.77  Aligned_cols=213  Identities=27%  Similarity=0.390  Sum_probs=191.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++.+++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... .   +...
T Consensus         7 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvltg~g~~FsaG~Dl~~~~~~-~---~~~~   79 (257)
T COG1024           7 ILVEREDGIAVITLNRPE--KLNALNLEMLDELAEALDEAEADPDVR-VVVLTGAGKAFSAGADLKELLSP-E---DGNA   79 (257)
T ss_pred             eEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCceecccCHHHHhcc-c---chhH
Confidence            567788889999999997  789999999999999999999999999 99999999999999999998740 1   1122


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch-hhHHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD-YFTALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-~g~~~l~~~~g~~  160 (243)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|+ ++++++++.+| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~eLal~~D~ria~~~-a~f~~pe~~iGl-~Pg~g~~~~l~r~~G-~  156 (257)
T COG1024          80 AENLMQPGQDLLRALADLPKPVIAAVNGYALGGGLELALACDIRIAAED-AKFGLPEVNLGL-LPGDGGTQRLPRLLG-R  156 (257)
T ss_pred             HHHHHhHHHHHHHHHHhCCCCEEEEEcceEeechhhhhhcCCeEEecCC-cEecCccccccc-CCCCcHHHHHHHhcC-H
Confidence            2256666788999999999999999999999999999999999999988 899999999999 785 45789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++||+.++++||+++||||+++++.+++.+.+.+++++++. |  |.++..+|+.++....
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~l~~~a~~~a~~~a~-~--~~a~~~~k~~~~~~~~  220 (257)
T COG1024         157 GRAKELLLTGEPISAAEALELGLVDEVVPDAEELLERALELARRLAA-P--PLALAATKRLVRAALE  220 (257)
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCcCeeeCCHHHHHHHHHHHHHHHcc-C--HHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999757999999999999998 6  8999999999887643

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=2.2e-46  Score=318.16  Aligned_cols=213  Identities=23%  Similarity=0.324  Sum_probs=187.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|.|++++.....  .....
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vvl~g~g~~F~aG~Dl~~~~~~~~--~~~~~   79 (262)
T PRK07509          5 VSVTIEDGIADVRLNRPD--KMNALDFAMFEELIATIKRLKKDRGIR-AVILSGEGGAFCAGLDVKSVASSPG--NAVKL   79 (262)
T ss_pred             EEEEeeCCEEEEEecCcc--cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCcCCCcCHHHHhcccc--hhhhh
Confidence            678899999999999997  899999999999999999999999999 9999999999999999998764211  11111


Q ss_pred             ----HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           82 ----LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        82 ----~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                          .......+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~kpvIaav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~  157 (262)
T PRK07509         80 LFKRLPGNANLAQRVSLGWRRLPVPVIAALEGVCFGGGLQIALGADIRIAAPD-TKLSIMEAKWGL-VPDMAGTVSLRGL  157 (262)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhCCCCEEEEECCeeecchHHHHHhCCEEEecCC-CEeecchhccCC-CCCchHHHHHHHH
Confidence                1122234566777888999999999999999999999999999999988 899999999999 67776 6899999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +| ...+++++++|++++|+||+++||||+++++   +.+++.++++++++.|  |.++..+|+.++....
T Consensus       158 ~g-~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~---~~~~a~~~a~~l~~~~--~~~~~~~K~~l~~~~~  222 (262)
T PRK07509        158 VR-KDVARELTYTARVFSAEEALELGLVTHVSDD---PLAAALALAREIAQRS--PDAIAAAKRLINRSWT  222 (262)
T ss_pred             hC-HHHHHHHHHcCCCcCHHHHHHcCChhhhhch---HHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhc
Confidence            99 9999999999999999999999999999954   6789999999999998  9999999999987643

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=4.4e-46  Score=313.66  Aligned_cols=206  Identities=19%  Similarity=0.261  Sum_probs=184.4

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      ||.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++...      . 
T Consensus         1 ~i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~a~~~~~~d~~vr-~vVl~g~g~~F~aG~Dl~~~~~~------~-   70 (248)
T PRK06072          1 MIKVESREGYAIVTMSRPD--KLNALNLEMRNEFISKLKQINADPKIR-VVIVTGEGRAFCVGADLSEFAPD------F-   70 (248)
T ss_pred             CeEEEEECCEEEEEECCcc--cccCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCcccCcCHHHHhhh------h-
Confidence            7899999999999999997  789999999999999999999999999 99999999999999999987531      1 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                       ...+.+.+..++..+.++||||||+|||+|+|+|++++++||+||++++ ++|++||.++|+ +|++| ++++++.+| 
T Consensus        71 -~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~~~~~~Gl-~p~~g~~~~l~~~~g-  146 (248)
T PRK06072         71 -AIDLRETFYPIIREIRFSDKIYISAINGVTAGACIGIALSTDFKFASRD-VKFVTAFQRLGL-ASDTGVAYFLLKLTG-  146 (248)
T ss_pred             -HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEecchhhcCc-CCCchHHHHHHHHhh-
Confidence             1223445677888999999999999999999999999999999999988 899999999999 67766 678999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      . ++++++++|++++|+||+++||||.+    +++.+++.++|++++..|  +.++..+|+.++....
T Consensus       147 ~-~a~~lll~g~~~~a~eA~~~Glv~~~----~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  207 (248)
T PRK06072        147 Q-RFYEILVLGGEFTAEEAERWGLLKIS----EDPLSDAEEMANRISNGP--FQSYIAAKRMINLVLY  207 (248)
T ss_pred             H-HHHHHHHhCCccCHHHHHHCCCcccc----chHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHhh
Confidence            7 78999999999999999999999953    356789999999999998  9999999999987643

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=7.6e-46  Score=320.51  Aligned_cols=216  Identities=22%  Similarity=0.289  Sum_probs=187.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc---c-
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA---G-   77 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~---~-   77 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|++||+|.|++++.......   . 
T Consensus        12 v~~e~~~~V~~Itlnrp~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~   88 (302)
T PRK08272         12 MTYEVTGRIARITLNRPE--KGNAITADTPLELRAAVERADLDPGVH-VILVSGAGKGFCAGYDLSAYAEGSSSGGGGGA   88 (302)
T ss_pred             EEEEeECCEEEEEecCcc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCcCHHHHhhcccccccccc
Confidence            678889999999999997  899999999999999999999999999 999999999999999999875421100   0 


Q ss_pred             ----------------hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeeccccc
Q 041046           78 ----------------ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI  141 (243)
Q Consensus        78 ----------------~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~  141 (243)
                                      +......+...+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~~ias~~-a~f~~pe~~~  167 (302)
T PRK08272         89 YPGKRQAVNHLPDDPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQVIAADD-AKIGYPPTRV  167 (302)
T ss_pred             cccccccccccccccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCEEEEeCC-CEecCcchhc
Confidence                            00001123455677888999999999999999999999999999999999998 8999999997


Q ss_pred             CCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 041046          142 GATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKS  221 (243)
Q Consensus       142 Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~  221 (243)
                      |. +|..  .++++++| .++|+++++||++++|+||+++||||+++|+ +++.+++.++|++|+..|  +.++..+|+.
T Consensus       168 gg-~~~~--~~~~~~vG-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~la~~ia~~~--~~a~~~~K~~  240 (302)
T PRK08272        168 WG-VPAT--GMWAYRLG-PQRAKRLLFTGDCITGAQAAEWGLAVEAVPP-EELDERTERLVERIAAVP--VNQLAMVKLA  240 (302)
T ss_pred             cc-CChH--HHHHHHhh-HHHHHHHHHcCCccCHHHHHHcCCCceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence            55 3433  35778999 9999999999999999999999999999997 899999999999999999  9999999999


Q ss_pred             hhhHHHH
Q 041046          222 LYPDLCG  228 (243)
Q Consensus       222 l~~~~~~  228 (243)
                      ++.....
T Consensus       241 l~~~~~~  247 (302)
T PRK08272        241 VNSALLQ  247 (302)
T ss_pred             HHHHHHH
Confidence            9876543

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.5e-46  Score=310.94  Aligned_cols=200  Identities=23%  Similarity=0.348  Sum_probs=179.7

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      ||.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.+ +++ +||++|.|++||+|.|+++...       . 
T Consensus         1 ~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~~-~vr-~vvl~g~g~~F~aG~Dl~~~~~-------~-   68 (243)
T PRK07854          1 MIGVTRDGQVLTIELQRPE--RRNALNAELCEELREAVRKAVDE-SAR-AIVLTGQGTVFCAGADLSGDVY-------A-   68 (243)
T ss_pred             CceEEEeCCEEEEEeCCCc--cccCCCHHHHHHHHHHHHHHhcC-Cce-EEEEECCCCceecccCCccchh-------H-
Confidence            6889999999999999997  88999999999999999999965 899 9999999999999999985211       1 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                        ..+...+.+++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        69 --~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~G-  143 (243)
T PRK07854         69 --DDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGLQLAMACDLRVVAPE-AYFQFPVAKYGI-ALDNWTIRRLSSLVG-  143 (243)
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEecCcccccHHHHHHhCCEEEEcCC-CEEecccccccc-CCCccHHHHHHHHhC-
Confidence              123344677888999999999999999999999999999999999988 899999999999 66665 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP  224 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~  224 (243)
                      ...+++++++|++++|+||+++||||+|++.    . ++.++++++++.|  +.++..+|+.++.
T Consensus       144 ~~~a~~l~ltg~~~~a~eA~~~Glv~~v~~~----~-~a~~~a~~l~~~~--~~a~~~~K~~l~~  201 (243)
T PRK07854        144 GGRARAMLLGAEKLTAEQALATGMANRIGTL----A-DAQAWAAEIAGLA--PLALQHAKRVLND  201 (243)
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCcccccCH----H-HHHHHHHHHHhCC--HHHHHHHHHHHHc
Confidence            9999999999999999999999999999752    2 7899999999998  9999999999875

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=1e-45  Score=313.60  Aligned_cols=213  Identities=24%  Similarity=0.364  Sum_probs=186.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++.....  .....
T Consensus         8 i~~~~~~~v~~i~lnrp~--~~Nal~~~~~~el~~~l~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~   82 (260)
T PRK07827          8 VRYAVDGGVATLTLDSPH--NRNALSARLVAQLHDGLRAAAADPAVR-AVVLTHTGGTFCAGADLSEAGGGGG--DPYDA   82 (260)
T ss_pred             eEEEeeCCEEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEEcCCCCccCCcChHHHhhccc--CchhH
Confidence            577889999999999997  889999999999999999999999999 9999999999999999998754211  11112


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhH-HHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g~~  160 (243)
                      ...+...+.++++++..+||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+ .++++. + .
T Consensus        83 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~l-~-~  158 (260)
T PRK07827         83 AVARAREMTALLRAIVELPKPVIAAIDGHVRAGGFGLVGACDIVVAGPE-STFALTEARIGV-APAIISLTLLPRL-S-P  158 (260)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeecchhhHHHhCCEEEEcCC-CEEeCcccccCC-CCCcccchhHHhh-h-H
Confidence            2234556778899999999999999999999999999999999999987 899999999999 788874 567765 5 5


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..+++++++|++++|+||+++||||++++   ++.+++.++++++++.|  +.++..+|+.++.....
T Consensus       159 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  221 (260)
T PRK07827        159 RAAARYYLTGEKFGAAEAARIGLVTAAAD---DVDAAVAALLADLRRGS--PQGLAESKALTTAAVLA  221 (260)
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcccchH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcC
Confidence            68999999999999999999999999963   58999999999999998  99999999999876543

>PLN02921 naphthoate synthase

Probab=100.00  E-value=1.7e-45  Score=319.86  Aligned_cols=211  Identities=20%  Similarity=0.332  Sum_probs=185.7

Q ss_pred             ceeeE--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccch
Q 041046            2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGA   78 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~   78 (243)
                      |.+++  +++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... .. 
T Consensus        67 i~~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~eL~~al~~~~~d~~vr-vVVLtg~G~k~FcaG~Dl~~~~~~~~-~~-  141 (327)
T PLN02921         67 IIYEKAVGEGIAKITINRPE--RRNAFRPRTVKELQRAFNDARDDSSVG-VIILTGKGTKAFCSGGDQAVRGKDGY-VG-  141 (327)
T ss_pred             EEEEEecCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEecCCCCceecCcChhhhhcccc-cc-
Confidence            56777  5889999999997  889999999999999999999999999 99999999 89999999997643100 00 


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh-hHHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~-g~~~l~~~~  157 (243)
                      ......+  ...+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|.+ |+.++++++
T Consensus       142 ~~~~~~~--~~~~l~~~l~~~~kPvIAaVnG~a~GGG~~LalacD~riA~~~-A~f~~pe~~~Gl-~p~~gg~~~L~rli  217 (327)
T PLN02921        142 PDDAGRL--NVLDLQIQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADN-AVFGQTGPKVGS-FDAGYGSSIMARLV  217 (327)
T ss_pred             hhHHHHH--HHHHHHHHHHhCCCCEEEEECCEEecHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence            1111111  1345778899999999999999999999999999999999988 899999999999 5655 578999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      | ..++++++++|+.++|+||+++||||+|++. +++.+++.+++++|++.|  +.+++.+|+.++..
T Consensus       218 G-~~~A~ellltG~~~~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~al~~~K~~l~~~  281 (327)
T PLN02921        218 G-QKKAREMWFLARFYTASEALKMGLVNTVVPL-DELEGETVKWCREILRNS--PTAIRVLKSALNAA  281 (327)
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHCCCceEEeCH-HHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHh
Confidence            9 9999999999999999999999999999998 899999999999999999  99999999999765

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=100.00  E-value=3.6e-45  Score=309.28  Aligned_cols=208  Identities=16%  Similarity=0.222  Sum_probs=181.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      +.++++++|++|+||+|+  +.|++|.+++.+|.+++++++  ++++ +||++|.|++||+|.|++++..... .  ...
T Consensus         6 i~~~~~~~i~~itlnrp~--~~Nal~~~~~~~L~~~l~~~~--~~vr-~vVl~g~g~~FsaG~Dl~~~~~~~~-~--~~~   77 (255)
T PRK07112          6 IRVRQQGDVCFLQLHRPE--AQNTINDRLIAECMDVLDRCE--HAAT-IVVLEGLPEVFCFGADFSAIAEKPD-A--GRA   77 (255)
T ss_pred             EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHhh--cCce-EEEEEcCCCCcccCcCHHHHhhccc-c--chh
Confidence            578899999999999997  789999999999999999998  4688 9999999999999999998754211 1  111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+.+++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++++.++++++| ..
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~l~~~vg-~~  154 (255)
T PRK07112         78 DLIDAEPLYDLWHRLATGPYVTIAHVRGKVNAGGIGFVAASDIVIADET-APFSLSELLFGL-IPACVLPFLIRRIG-TQ  154 (255)
T ss_pred             hhhhHHHHHHHHHHHHcCCCCEEEEEecEEEcchhHHHHcCCEEEEcCC-CEEeCchhhhcc-CcchhhHHHHHHhC-HH
Confidence            1111334567888999999999999999999999999999999999987 899999999999 78877788999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++++++|++++|+||+++||||+|+++ ++  ..+.+++++++..|  |.++..+|+.++..
T Consensus       155 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~--~~~~~~a~~l~~~~--p~a~~~~K~~~~~~  213 (255)
T PRK07112        155 KAHYMTLMTQPVTAQQAFSWGLVDAYGAN-SD--TLLRKHLLRLRCLN--KAAVARYKSYASTL  213 (255)
T ss_pred             HHHHHHHhCCcccHHHHHHcCCCceecCc-HH--HHHHHHHHHHHhCC--HHHHHHHHHHHHHh
Confidence            99999999999999999999999999997 43  25788999999998  99999999998754

>PRK08788 enoyl-CoA hydratase; Validated

Probab=100.00  E-value=6.6e-45  Score=310.97  Aligned_cols=214  Identities=21%  Similarity=0.262  Sum_probs=177.3

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHh-----CCCCCeEEEEecC-CCccccCCChhhHHhcccc
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKA-----EATPGSALITTSH-GKFFSNGLDLAWAQAAGSR   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~-----d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~   75 (243)
                      |.++++++|++|++| |.  +.|++|.+++.+|.+++++++.     |++++ +||++|. |++||+|.|++++..... 
T Consensus        19 i~~e~~~~ia~itl~-p~--~~Nal~~~~~~eL~~al~~~~~~~~~~d~~vr-vVVltg~~gk~FcaG~Dl~~~~~~~~-   93 (287)
T PRK08788         19 VYYEEERNVMWMYMR-AQ--PRPCFNLELLDDIMNLQRAIRQRLDDSGLPVD-FWVLASDVPGVFNLGGDLALFAELIR-   93 (287)
T ss_pred             EEEEccCCEEEEEEC-CC--CCCCCCHHHHHHHHHHHHHHHhhccCCCCCeE-EEEEEcCCCCceEeCcCHHHHhhhcc-
Confidence            567778999999996 76  8999999999999999999998     89999 9999999 799999999998753211 


Q ss_pred             cchHHHHHHHHHhHHHHHHHHh---cCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HH
Q 041046           76 AGARERLLYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TA  151 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~---~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~  151 (243)
                      ..+......+...+.+.+.++.   .+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~pkPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pev~lGl-~p~~g~~~  171 (287)
T PRK08788         94 AGDRDALLAYARACVDGVHAFHRGFGAGAISIALVQGDALGGGFEAALSHHTIIAERG-AKMGFPEILFNL-FPGMGAYS  171 (287)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCeeehHHHHHHHhCCEEEecCC-CEeeCchhhhCc-CCCchHHH
Confidence            1111111122222233333333   799999999999999999999999999999988 899999999999 67765 68


Q ss_pred             HHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046          152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP  224 (243)
Q Consensus       152 ~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~  224 (243)
                      ++++++| ..++++++++|+.++|+||+++||||+++|+ +++.+++.+++++++..|..+.++...|+.++.
T Consensus       172 ~l~~~vG-~~~A~ellltG~~l~A~eA~~~GLV~~vv~~-~el~~~a~~~a~~ia~~~~~~~a~k~~~~~~~~  242 (287)
T PRK08788        172 FLARRVG-PKLAEELILSGKLYTAEELHDMGLVDVLVED-GQGEAAVRTFIRKSKRKLNGWRAMLRARRRVNP  242 (287)
T ss_pred             HHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCc-hHHHHHHHHHHHHHhcCccHHHHHHHHHHhhcc
Confidence            9999999 9999999999999999999999999999998 889999999999999764335666666666544

>PRK08321 naphthoate synthase; Validated

Probab=100.00  E-value=5.6e-45  Score=314.77  Aligned_cols=216  Identities=18%  Similarity=0.280  Sum_probs=183.3

Q ss_pred             ceeeE--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-------CccccCCChhhHHhc
Q 041046            2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-------KFFSNGLDLAWAQAA   72 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-------~~F~~G~dl~~~~~~   72 (243)
                      |.+++  +++|++||||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|       ++||+|.|++++...
T Consensus        25 i~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~l~~al~~~~~d~~vr-vvVltg~g~~~~~~~~~FcaG~Dl~~~~~~  101 (302)
T PRK08321         25 ITYHRAVDQGTVRIAFDRPE--VRNAFRPHTVDELYRALDHARMSPDVG-CVLLTGNGPSPKDGGWAFCSGGDQRIRGRD  101 (302)
T ss_pred             EEEEEecCCCEEEEEeCCcc--cccCCCHHHHHHHHHHHHHHhhCCCcE-EEEEeCCCCCCCCCCCeeecCcChhhhccc
Confidence            56677  8899999999997  889999999999999999999999999 99999988       599999999875321


Q ss_pred             c----c-ccchHHHHHHHH-HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEe-cCCcceeecccccCCCC
Q 041046           73 G----S-RAGARERLLYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMR-RDKGVLYMSEVDIGATL  145 (243)
Q Consensus        73 ~----~-~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~  145 (243)
                      .    . .+.......+.. ..+.++...+.++||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+.+
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~~Gl~p  180 (302)
T PRK08321        102 GYQYAEGDEADTVDPARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDLTLASREH-ARFKQTDADVGSFD  180 (302)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCEEEEecCC-CEEECCccccccCC
Confidence            0    0 000000001111 112356778889999999999999999999999999999999 46 89999999999943


Q ss_pred             chhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       146 p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      |.+++.++++++| ...+++++++|++++|+||+++||||+++++ +++.+++.++++++++.|  +.+++.+|+.++..
T Consensus       181 ~~~~~~~L~r~vG-~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  256 (302)
T PRK08321        181 GGYGSAYLARQVG-QKFAREIFFLGRTYSAEEAHDMGAVNAVVPH-AELETEALEWAREINGKS--PTAMRMLKYAFNLT  256 (302)
T ss_pred             CchHHHHHHHHhC-HHHHHHHHHcCCccCHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhh
Confidence            4455789999999 9999999999999999999999999999997 889999999999999999  99999999998754

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=100.00  E-value=8.4e-45  Score=312.98  Aligned_cols=214  Identities=19%  Similarity=0.166  Sum_probs=179.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhh-HHh---cccccc
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAW-AQA---AGSRAG   77 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~-~~~---~~~~~~   77 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +|||||.|++||+|.|+++ +..   ....+.
T Consensus         7 v~~~~~~~Va~ItLnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~   83 (298)
T PRK12478          7 LLYTTAGPVATITLNRPE--QLNTIVPPMPDEIEAAIGLAERDQDIK-VIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDG   83 (298)
T ss_pred             EEEeccCCEEEEEecCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCcccCcCccccccccchhccccc
Confidence            567889999999999997  899999999999999999999999999 9999999999999999985 211   000000


Q ss_pred             --h-HHHHH---HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeeccccc-CCCCchhhH
Q 041046           78 --A-RERLL---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI-GATLPDYFT  150 (243)
Q Consensus        78 --~-~~~~~---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~-Gl~~p~~g~  150 (243)
                        + .....   .........+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++ |+ +++ +.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-A~f~~pe~~l~G~-~~~-~~  160 (298)
T PRK12478         84 RWDPGKDFAMVTARETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADIVIASDD-AVIGTPYSRMWGA-YLT-GM  160 (298)
T ss_pred             ccCchhhhhhhhhhhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCEEEEcCC-cEEeccccccccC-Cch-hH
Confidence              0 01110   00011234566788999999999999999999999999999999988 8999999997 88 442 23


Q ss_pred             HHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       151 ~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .  .+++| ..++++|+++|++++|+||+++||||+||++ +++.+++.++|++++..|  |.+++.+|+.++....
T Consensus       161 ~--~~~vG-~~~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  231 (298)
T PRK12478        161 W--LYRLS-LAKVKWHSLTGRPLTGVQAAEAELINEAVPF-ERLEARVAEVATELARIP--LSQLQAQKLIVNQAYE  231 (298)
T ss_pred             H--HHHhh-HHHHHHHHHcCCccCHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence            2  35699 9999999999999999999999999999998 899999999999999999  9999999999987544

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=100.00  E-value=4.7e-45  Score=319.77  Aligned_cols=213  Identities=20%  Similarity=0.216  Sum_probs=185.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|.|++++..... +.+..
T Consensus         5 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~~l~~~~~d~~vr-vvVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   80 (342)
T PRK05617          5 VLAEVEGGVGVITLNRPK--ALNALSLEMIRAIDAALDAWEDDDAVA-AVVIEGAGERGFCAGGDIRALYEAAR-AGDPL   80 (342)
T ss_pred             EEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEEcCCCCceeCCcCHHHHHhhhc-cCCch
Confidence            678899999999999997  889999999999999999999999999 99999999 99999999998754211 11111


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.....+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++.| 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~g~~~~L~r~~g-  157 (342)
T PRK05617         81 AADRFFREEYRLNALIARYPKPYIALMDGIVMGGGVGISAHGSHRIVTER-TKMAMPETGIGF-FPDVGGTYFLSRAPG-  157 (342)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCEEEccHhHHhhhCCEEEEcCC-CEeeCCccccCc-CCCccceeEehhccc-
Confidence            11133334457888999999999999999999999999999999999988 899999999999 78777 578888755 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH------------------------------------------
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA------------------------------------------  197 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~------------------------------------------  197 (243)
                       ..+++++++|+.++|+||+++||||+++++ +++.+.                                          
T Consensus       158 -~~a~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  235 (342)
T PRK05617        158 -ALGTYLALTGARISAADALYAGLADHFVPS-ADLPALLDALISLRWDSGADVVDAALAAFATPAPASELAAQRAWIDEC  235 (342)
T ss_pred             -HHHHHHHHcCCCCCHHHHHHcCCcceecCH-HHHHHHHHHHHhcCCccchhHHHHHHHHhccCCCcchhHHHHHHHHHH
Confidence             578999999999999999999999999998 778776                                          


Q ss_pred             --------------------HHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          198 --------------------SMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       198 --------------------a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                                          +.+++++|++.|  |.++..+|+.++..
T Consensus       236 ~~~~~~~~~~~~l~~~~~~~a~~~a~~i~~~s--p~a~~~~k~~l~~~  281 (342)
T PRK05617        236 FAGDTVEDIIAALEADGGEFAAKTADTLRSRS--PTSLKVTLEQLRRA  281 (342)
T ss_pred             hCCCCHHHHHHHHHhccHHHHHHHHHHHHhCC--cHHHHHHHHHHHHh
Confidence                                889999999999  99999999999754

>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=9.3e-46  Score=295.07  Aligned_cols=224  Identities=21%  Similarity=0.309  Sum_probs=202.9

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcc--cccch-----H
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAG--SRAGA-----R   79 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~--~~~~~-----~   79 (243)
                      ++-|+++.+|||.  +.|+++..++.|+.++|+.+.+||+++ +||++|.|+.||+|+|++......  ..+.+     .
T Consensus        29 ~~~V~hv~lnRPs--k~Nal~~~~w~E~~~cf~~l~~dpdcr-~iilsg~GKhFcaGIDl~~~~~~~~~~~~~dd~aR~g  105 (292)
T KOG1681|consen   29 QPFVYHVQLNRPS--KLNALNKVFWREFKECFDSLDRDPDCR-AIILSGAGKHFCAGIDLNDMASDRILQPEGDDVARKG  105 (292)
T ss_pred             CCeEEEEEecCcc--hhhhhhHHHHHHHHHHHHhhccCCCce-EEEEecCCcceecccCcchhhhhhccccccchHhhhh
Confidence            3569999999998  999999999999999999999999999 999999999999999988664321  10111     3


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhH-HHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~~g  158 (243)
                      ..+++++..+++.+..|.+||||+|++|||+|+|+|+.|..+||+||+++| ++|...|+.+|+ ..+.|+ .|||+.+|
T Consensus       106 ~~lrr~Ik~~Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDIRycsqD-AffsvkEVDvgl-aADvGTL~RlpkvVG  183 (292)
T KOG1681|consen  106 RSLRRIIKRYQDTFTAIERCPKPVIAAVHGACIGAGVDLITACDIRYCSQD-AFFSVKEVDVGL-AADVGTLNRLPKVVG  183 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHhCChhHHHHHHhhhccccccceeecceeeeccc-ceeeeeeeeeeh-hhchhhHhhhhHHhc
Confidence            346788889999999999999999999999999999999999999999999 899999999999 788884 89999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhccchhhh
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGLDIRAV  237 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~~~~~~~  237 (243)
                      +.+.++++.+|++.|+|.||++.|||++|+|+.+++.+.+..+|+.|+.++  |.+...+|..|...-.+..++...++
T Consensus       184 n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~ll~~~l~mA~~Ia~KS--pvaVqgTK~~L~ysrehsv~~sLnyv  260 (292)
T KOG1681|consen  184 NQSLARELAFTARKFSADEALDSGLVSRVFPDKEELLNGALPMAELIASKS--PVAVQGTKENLLYSREHSVEESLNYV  260 (292)
T ss_pred             chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHHHhhhHHHHHHhccCC--ceeeechHHHHHHHhhhhhhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999  99999999999888887777554444

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=4.7e-44  Score=317.11  Aligned_cols=212  Identities=16%  Similarity=0.146  Sum_probs=184.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|+.||+|.|++++..... ......
T Consensus        39 V~~e~~g~v~~ItLNRP~--~lNALs~~m~~~L~~al~~~~~D~~vr-vVVl~G~GkaFcAGgDl~~l~~~~~-~~~~~~  114 (401)
T PLN02157         39 VLVEGSGCSRTAILNRPP--ALNALTTHMGYRLQKLYKNWEEDPNIG-FVMMKGSGRAFCAGGDIVSLYHLRK-RGSPDA  114 (401)
T ss_pred             eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence            567889999999999997  889999999999999999999999999 9999999999999999998764211 111122


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...++...+++...|.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus       115 ~~~~~~~~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~rvate~-a~fa~PE~~iGl-~Pd~G~s~~L~rl~G-~  191 (401)
T PLN02157        115 IREFFSSLYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPGTFRVATDR-TIFATPETIIGF-HPDAGASFNLSHLPG-R  191 (401)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhCCEEEEeCC-CEEEChhhhcCC-CCCccHHHHHHHhhh-H
Confidence            2344444455778899999999999999999999999999999999988 899999999999 78876 678999998 5


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                       .+++|++||+.++|+||+++||+++++|+ +++ +++.+++.+++..+  +.++..+|+.++..
T Consensus       192 -~a~~L~LTG~~i~A~eA~~~GLv~~vVp~-~~l-~~~~~~~~~i~~~~--p~av~~~k~~~~~~  251 (401)
T PLN02157        192 -LGEYLGLTGLKLSGAEMLACGLATHYIRS-EEI-PVMEEQLKKLLTDD--PSVVESCLEKCAEV  251 (401)
T ss_pred             -HHHHHHHcCCcCCHHHHHHcCCceEEeCH-hHH-HHHHHHHHHHHcCC--HHHHHHHHHHHhcc
Confidence             68999999999999999999999999998 777 67779999999887  88899999887643

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=1.6e-43  Score=313.63  Aligned_cols=211  Identities=18%  Similarity=0.191  Sum_probs=181.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++|+ +||++|.|++||+|.|++++..... ..  ..
T Consensus        13 v~~~~~~~v~~ItLnrP~--~~Nal~~~m~~eL~~al~~~~~d~~vr-vvVl~g~g~~FcaG~Dl~~~~~~~~-~~--~~   86 (379)
T PLN02874         13 VLGEEKGRVRVITLNRPR--QLNVISLSVVSLLAEFLEQWEKDDSVE-LIIIKGAGRAFSAGGDLKMFYDGRE-SD--DS   86 (379)
T ss_pred             eEEEEECCEEEEEECCCc--cccCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCccCHHHHHhhcc-cc--hH
Confidence            567889999999999997  789999999999999999999999999 9999999999999999998754211 11  11


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+......++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++.+| .
T Consensus        87 ~~~~~~~~~~l~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~L~rl~g-~  163 (379)
T PLN02874         87 CLEVVYRMYWLCYHIHTYKKTQVALVHGLVMGGGAGLMVPMKFRVVTEK-TVFATPEASVGF-HTDCGFSYILSRLPG-H  163 (379)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEecCeEEecHHHHHHhCCeEEEeCC-eEEeccccccCc-CCChhHHHHHHhhhH-H
Confidence            2223334456678899999999999999999999999999999999988 899999999999 67776 678888877 5


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHH---H----------------------------------------
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAE---A----------------------------------------  197 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~---~----------------------------------------  197 (243)
                       .+++|++||++++|++|+++||||++|++ +++.+   +                                        
T Consensus       164 -~a~~l~ltG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~  241 (379)
T PLN02874        164 -LGEYLALTGARLNGKEMVACGLATHFVPS-EKLPELEKRLLNLNSGDESAVQEAIEEFSKDVQADEDSILNKQSWINEC  241 (379)
T ss_pred             -HHHHHHHcCCcccHHHHHHcCCccEEeCH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhhcccCCCcchhHHHHHHHHHH
Confidence             78899999999999999999999999997 67755   2                                        


Q ss_pred             ------------------------HHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          198 ------------------------SMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       198 ------------------------a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                                              |.++++.|++.|  |.+++.+|++++..
T Consensus       242 f~~~~~~eii~al~~~~~~~~~~~A~~~a~~l~~~s--P~al~~tk~~~~~~  291 (379)
T PLN02874        242 FSKDTVEEIIKAFESEASKTGNEWIKETLKGLRRSS--PTGLKITLRSIREG  291 (379)
T ss_pred             hCCCCHHHHHHHHhhcccccccHHHHHHHHHHHhcC--hHHHHHHHHHHHHh
Confidence                                    347899999998  99999999988764

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=100.00  E-value=1.5e-42  Score=299.74  Aligned_cols=208  Identities=15%  Similarity=0.191  Sum_probs=182.2

Q ss_pred             CCEE--EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHH
Q 041046            8 GDVF--VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLY   84 (243)
Q Consensus         8 ~~v~--~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~   84 (243)
                      +|++  +|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| ++||+|.|++++..... .. .....+
T Consensus        34 ~~~~~A~ItLNRP~--k~NAls~~ml~eL~~al~~~~~D~dVr-vVVLTG~G~kaFCAG~DLke~~~~~~-~~-~~~~~~  108 (360)
T TIGR03200        34 PGLYNAWIILDNPK--QYNSYTTDMVKAIILAFRRASSDRDVV-AVVFTAVGDKAFCTGGNTKEYAEYYA-GN-PQEYRQ  108 (360)
T ss_pred             CceEEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEEcCCCCcccCCcCHHHHhhhcc-cC-hhHHHH
Confidence            4544  49999997  789999999999999999999999999 99999999 69999999998765311 11 223345


Q ss_pred             HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHH
Q 041046           85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATAR  163 (243)
Q Consensus        85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a  163 (243)
                      +...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +.+|++++| ..++
T Consensus       109 ~~~~~~~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCDlrIAse~-A~Fg~PE~rlGl-~P~~Ggt~rLprlvG-~~rA  185 (360)
T TIGR03200       109 YMRLFNDMVSAILGCDKPVICRVNGMRIGGGQEIGMAADFTIAQDL-ANFGQAGPKHGS-APIGGATDFLPLMIG-CEQA  185 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhhC-HHHH
Confidence            5666778899999999999999999999999999999999999988 899999999999 67776 679999999 9999


Q ss_pred             HHHHhccCCCCHHHHHHcCchhhhcCChHHH------------HHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046          164 RDVLLRAKKIKGEEALRMGLVQAAYDSEEQV------------AEASMRLAKQMAGRKWAGEVYAEIRKSLYP  224 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l------------~~~a~~~a~~la~~~~~~~~~~~~K~~l~~  224 (243)
                      ++++++|++++|+||+++||||+|+|+ +++            ++++.++++.+...+....+....|.++..
T Consensus       186 ~~llltGe~~sA~EA~~~GLVd~VVp~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~k~~~~~  257 (360)
T TIGR03200       186 MVSGTLCEPWSAHKAKRLGIIMDVVPA-LKVDGKFVANPLVVTDRYLDEFGRIVHGEFKAGDELKAGKELIKQ  257 (360)
T ss_pred             HHHHHhCCcCcHHHHHHcCChheecCc-hhcCcchhcCcccchHHHHHHHhHHhcCCCcchhHHHHHHHHHhc
Confidence            999999999999999999999999998 788            888889999999988444488888887776

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=100.00  E-value=2.8e-42  Score=304.76  Aligned_cols=210  Identities=18%  Similarity=0.214  Sum_probs=178.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||||+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ......
T Consensus        11 v~~~~~~~i~~ItLnRP~--~lNALs~~m~~~L~~al~~~~~d~~v~-~VVl~G~G~~FcAGgDl~~l~~~~~-~~~~~~   86 (381)
T PLN02988         11 VLVEEKSSVRILTLNRPK--QLNALSFHMISRLLQLFLAFEEDPSVK-LVILKGHGRAFCAGGDVAAVVRDIE-QGNWRL   86 (381)
T ss_pred             eEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCcccCcCHHHHHhhhc-ccchhH
Confidence            567889999999999997  789999999999999999999999999 9999999999999999998753211 111111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...++.....+...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        87 ~~~~f~~~~~l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~rvate~-a~f~mPE~~iGl-~Pd~G~s~~L~rl~G-~  163 (381)
T PLN02988         87 GANFFSDEYMLNYVMATYSKAQVSILNGIVMGGGAGVSVHGRFRIATEN-TVFAMPETALGL-FPDVGASYFLSRLPG-F  163 (381)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEecCeEeehhhHHhhcCCeEEEcCC-cEEeChhhhcCc-CCCccHHHHHHHHHH-H
Confidence            1222333344567888999999999999999999999999999999987 899999999999 78876 678999888 5


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhh
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLY  223 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~  223 (243)
                       .++++++||++++|++|+++||+|+++++ +++.+.+.+++ +++..+  +.++..+|+.+.
T Consensus       164 -~~~~l~LTG~~i~a~eA~~~GLv~~vv~~-~~l~~~~~~la-~~~~~~--p~~~~~~~~~~~  221 (381)
T PLN02988        164 -FGEYVGLTGARLDGAEMLACGLATHFVPS-TRLTALEADLC-RIGSND--PTFASTILDAYT  221 (381)
T ss_pred             -HHHHHHHcCCCCCHHHHHHcCCceEecCH-hHHHHHHHHHH-HhhccC--HHHHHHHHHHhh
Confidence             57899999999999999999999999998 88999888888 676665  666777777665

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=3.9e-42  Score=314.74  Aligned_cols=215  Identities=16%  Similarity=0.142  Sum_probs=185.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCCCc-cccCCCh
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDE-------------HRFGPSAIDSILSAIAKAKA-EATPGSALITTSHGKF-FSNGLDL   66 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~-------------N~~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g~~-F~~G~dl   66 (243)
                      +.++++++|++||||+|+  +.             |+++.+++.+|.+++.+++. |++++ +||+||.|+. ||+|.|+
T Consensus       260 v~~~~~~~va~itlnrP~--~~~~~~~~~~~~~~~Nal~~~~~~~L~~a~~~~~~~d~~vr-~vVl~g~G~~~F~aG~Dl  336 (546)
T TIGR03222       260 VAIDRAARTATITLKGPK--AAQPADIAAIVAQGANWWPLKLARELDDAILHLRTNELDIG-LWVFRTQGDAELVLAADA  336 (546)
T ss_pred             EEEeccCCEEEEEecChh--hcCccccccccccccCcCCHHHHHHHHHHHHHHhhCCCCeE-EEEEEcCCCCceecCcCc
Confidence            345678999999999997  78             99999999999999999994 59999 9999999987 9999999


Q ss_pred             hhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE-CcccchhH-HHHHHhccEEEE-------ecCCcceeec
Q 041046           67 AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV-NGHAAAAG-FTLALSHDYVIM-------RRDKGVLYMS  137 (243)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v-~G~a~G~G-~~la~~~D~~ia-------~~~~~~f~~p  137 (243)
                      +....    .+ ...........++++.+|.++|||+||+| ||+|+||| ++|+++||+||+       +++ ++|++|
T Consensus       337 ~~~~~----~~-~~~~~~~~~~~~~~~~~l~~~~kpviAav~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~~  410 (546)
T TIGR03222       337 LLEAH----KD-HWFVRETIGYLRRTLARLDVSSRSLFALIEPGSCFAGTLAELAFAADRSYMLAFPDNNDPE-PAITLS  410 (546)
T ss_pred             ccccc----cc-chhHHHHHHHHHHHHHHHHcCCCCEEEEECCCeEeHHHHHHHHHhCceeeecCCCCCCCCC-CEEeCC
Confidence            84221    11 11112223344668889999999999999 89999999 999999999999       787 899999


Q ss_pred             ccccCCCCchhh-HHHHHHHh-CCHHHH--HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChh
Q 041046          138 EVDIGATLPDYF-TALFRAKV-GSATAR--RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGE  213 (243)
Q Consensus       138 e~~~Gl~~p~~g-~~~l~~~~-g~~~~a--~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~  213 (243)
                      |+++|+ +|++| +++|++++ | ..++  ++++++|+.++|+||+++|||++|+++ +++.+++.++++++++.|  |.
T Consensus       411 e~~lGl-~p~~gg~~~L~~~v~G-~~~a~~~~~~ltg~~i~A~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--p~  485 (546)
T TIGR03222       411 ELNFGL-YPMVNGLSRLATRFYA-EPAPVAAVRDKIGQALDAEEAERLGLVTAAPDD-IDWEDEIRIALEERASFS--PD  485 (546)
T ss_pred             cccccc-CCCcCcHHHHHHHhcC-chhHHHHHHHHhCCCCCHHHHHHcCCcccccCc-hHHHHHHHHHHHHHHhcC--HH
Confidence            999999 78876 68999998 9 8888  559999999999999999999999998 889999999999999999  99


Q ss_pred             HHHHHHHHhhhHHHHHh
Q 041046          214 VYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       214 ~~~~~K~~l~~~~~~~~  230 (243)
                      +++.+|+.++......+
T Consensus       486 a~~~~K~~l~~~~~~~~  502 (546)
T TIGR03222       486 ALTGLEANLRFAGPETM  502 (546)
T ss_pred             HHHHHHHHHhhcCCcCh
Confidence            99999999886644433

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=4.6e-42  Score=315.15  Aligned_cols=215  Identities=13%  Similarity=0.106  Sum_probs=184.7

Q ss_pred             eeeEeCCEEEEEEcCCCCCCC-------------CCCCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCC-CccccCCChh
Q 041046            3 TLEKHGDVFVLTLTGSSDVDE-------------HRFGPSAIDSILSAIAKAKA-EATPGSALITTSHG-KFFSNGLDLA   67 (243)
Q Consensus         3 ~~~~~~~v~~i~ln~p~~~~~-------------N~~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g-~~F~~G~dl~   67 (243)
                      .++++++|++||+|+|+  +.             |++|.+|+.+|.+++++++. |++++ +||+||.| +.||+|.|++
T Consensus       265 ~~~~~~~va~itlnrP~--~~Na~~~~~~~~~~~Nal~~~~~~eL~~al~~~~~~d~~vr-~vVltg~G~~~F~aG~Dl~  341 (550)
T PRK08184        265 EIDRAARTATITVKAPT--AAQPADIAGIVAAGAAWWPLQMARELDDAILHLRTNELDIG-TWVLKTEGDAAAVLAADAT  341 (550)
T ss_pred             EEEccCCEEEEEEeCcc--cccccccccccccccccCCHHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCCcEEeCCChh
Confidence            45567899999999997  77             68999999999999999996 79999 99999999 4999999987


Q ss_pred             hHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC-cccchhH-HHHHHhccEEEEe-------cCCcceeecc
Q 041046           68 WAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-FTLALSHDYVIMR-------RDKGVLYMSE  138 (243)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~-G~a~G~G-~~la~~~D~~ia~-------~~~~~f~~pe  138 (243)
                      ....  .  . ..........+..++.++.++||||||+|| |+|+||| ++|+++||+||++       ++ ++|++||
T Consensus       342 ~~~~--~--~-~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~G~a~GgG~~eLalacD~~ia~~~~~~~~~~-a~f~~pe  415 (550)
T PRK08184        342 LLAH--K--D-HWLVRETRGYLRRTLKRLDVTSRSLFALIEPGSCFAGTLAELALAADRSYMLALPDDNDPA-PAITLSA  415 (550)
T ss_pred             hhcc--c--c-hHHHHHHHHHHHHHHHHHHhCCCCEEEEECCCceehhHHHHHHHHCChhhhcCCCCCCCCC-CEEECcc
Confidence            3221  1  1 111122234456688899999999999997 9999999 9999999999999       76 8999999


Q ss_pred             cccCCCCchhh-HHHHHHH-hCCHHHHHHH--HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhH
Q 041046          139 VDIGATLPDYF-TALFRAK-VGSATARRDV--LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEV  214 (243)
Q Consensus       139 ~~~Gl~~p~~g-~~~l~~~-~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~  214 (243)
                      +++|+ +|++| +++|+++ +| ..+++++  +++|++++|+||+++||||+++|+ +++.+++.++|++++..|  |.+
T Consensus       416 ~~~Gl-~p~~gg~~~L~r~~vG-~~~A~~~~l~~tg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a  490 (550)
T PRK08184        416 LNFGL-YPMVNGLSRLARRFYG-EPDPLAAVRAKIGQPLDADAAEELGLVTAAPDD-IDWEDEVRIALEERASLS--PDA  490 (550)
T ss_pred             ccccC-CCCCCcHHHhHHHhcC-hHHHHHHHHHHhCCcCCHHHHHHcCCcccccCh-HHHHHHHHHHHHHHHhCC--HHH
Confidence            99999 78875 7899998 69 9988887  589999999999999999999998 899999999999999999  999


Q ss_pred             HHHHHHHhhhHHHHHhc
Q 041046          215 YAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       215 ~~~~K~~l~~~~~~~~~  231 (243)
                      ++.+|+.++....+.++
T Consensus       491 ~~~~K~~l~~~~~~~~~  507 (550)
T PRK08184        491 LTGMEANLRFAGPETME  507 (550)
T ss_pred             HHHHHHHHHhcCCCCHH
Confidence            99999999876544333

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=3.1e-41  Score=320.37  Aligned_cols=198  Identities=24%  Similarity=0.352  Sum_probs=176.8

Q ss_pred             ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.++ ++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|++||+|+|++++.....  .+..
T Consensus         8 i~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~--~~~~   82 (715)
T PRK11730          8 LQVDWLEDGIAELVFDAPG--SVNKLDRATLASLGEALDALEAQSDLK-GLLLTSAKDAFIVGADITEFLSLFA--APEE   82 (715)
T ss_pred             EEEEEcCCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCcE-EEEEECCCCccccCcCHHHHhhhcc--CCHH
Confidence            4556 37899999999997  889999999999999999999999999 9999999999999999998754211  1122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        83 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~LAlacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~rlvG-  159 (715)
T PRK11730         83 ELSQWLHFANSIFNRLEDLPVPTVAAINGYALGGGCECVLATDYRVASPD-ARIGLPETKLGI-MPGFGGTVRLPRLIG-  159 (715)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEeCchhhcCC-CCCchHHHHHHHhcC-
Confidence            23445556778899999999999999999999999999999999999988 899999999999 77776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      ...+++++++|++++|+||+++||||+++++ +++.+++.++|++++..
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  207 (715)
T PRK11730        160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAP-EKLQEAALALLKQAIAG  207 (715)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCeEecCH-HHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 88999999999999965

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=100.00  E-value=5.8e-41  Score=272.72  Aligned_cols=195  Identities=29%  Similarity=0.448  Sum_probs=177.0

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|+.||+|.|++++.....   +...
T Consensus         1 i~~~~~~~i~~i~l~~~~--~~N~~~~~~~~~l~~~l~~~~~d~~~~-~vvl~~~~~~Fs~G~dl~~~~~~~~---~~~~   74 (195)
T cd06558           1 VLVERDGGVATITLNRPE--KRNALSLEMLDELAAALDEAEADPDVR-VVVLTGAGKAFCAGADLKELAALSD---AGEE   74 (195)
T ss_pred             CEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceEeCcCHHHHhcccc---cchh
Confidence            568899999999999996  699999999999999999999999999 9999999999999999999876422   1113


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ..++...+++++.++.++|||+|+++||+|.|+|++++++||+||++++ ++|++||.++|+.+|.+++.++.+++| .+
T Consensus        75 ~~~~~~~~~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D~~i~~~~-~~~~~pe~~~G~~p~~g~~~~l~~~~g-~~  152 (195)
T cd06558          75 ARAFIRELQELLRALLRLPKPVIAAVNGAALGGGLELALACDIRIAAED-AKFGLPEVKLGLVPGGGGTQRLPRLVG-PA  152 (195)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEechhhhcCCCCCCcHHHHHHHHhC-HH
Confidence            5677888999999999999999999999999999999999999999988 899999999999434444789999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                      .+.+++++|++++++||+++||+|+++++ +++.+++.++++++
T Consensus       153 ~a~~~~l~g~~~~a~ea~~~Glv~~~~~~-~~l~~~a~~~a~~~  195 (195)
T cd06558         153 RARELLLTGRRISAEEALELGLVDEVVPD-EELLAAALELARRL  195 (195)
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCCeecCh-hHHHHHHHHHHhhC
Confidence            99999999999999999999999999998 88999999998763

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=100.00  E-value=2e-40  Score=293.86  Aligned_cols=197  Identities=15%  Similarity=0.167  Sum_probs=171.3

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++..+++++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++..... ..+...
T Consensus        44 v~~e~~~~~~~ItLNRP~--~lNALs~~m~~eL~~al~~~~~D~~vr-vVVL~G~GkaFcAGgDl~~l~~~~~-~~~~~~  119 (407)
T PLN02851         44 VLVEGRAKSRAAILNRPS--SLNALTIPMVARLKRLYESWEENPDIG-FVLMKGSGRAFCSGADVVSLYHLIN-EGNVEE  119 (407)
T ss_pred             eEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHHhhcc-ccchHH
Confidence            567889999999999997  899999999999999999999999999 9999999999999999998865322 111233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...++...+++...+.++|||+||++||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++..| .
T Consensus       120 ~~~~f~~~~~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~rVate~-a~famPE~~iGl-~PdvG~s~~L~rl~g-~  196 (407)
T PLN02851        120 CKLFFENLYKFVYLQGTYLKPNVAIMDGITMGCGAGISIPGMFRVVTDK-TVFAHPEVQMGF-HPDAGASYYLSRLPG-Y  196 (407)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCEEEEeCC-ceEecchhccCC-CCCccHHHHHHHhcC-H
Confidence            4556666778888999999999999999999999999999999999988 899999999999 78887 578888888 5


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                       .++++++||++++|++|+++||+++++++ +++ +.+.+.+.++...
T Consensus       197 -~g~~L~LTG~~i~a~eA~~~GLa~~~v~~-~~l-~~l~~~l~~~~~~  241 (407)
T PLN02851        197 -LGEYLALTGQKLNGVEMIACGLATHYCLN-ARL-PLIEERLGKLLTD  241 (407)
T ss_pred             -HHHHHHHhCCcCCHHHHHHCCCceeecCH-hhH-HHHHHHHHhhccC
Confidence             48899999999999999999999999998 666 6666666665443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=100.00  E-value=2.3e-40  Score=314.31  Aligned_cols=192  Identities=23%  Similarity=0.374  Sum_probs=169.9

Q ss_pred             eeeE-eCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            3 TLEK-HGDVFVLTLTGS-SDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         3 ~~~~-~~~v~~i~ln~p-~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      .+++ +++|++|+||+| +  +.|++|.+++.+|.+++++++.|++++ +||++|.+ ++||+|+|++++.....    .
T Consensus         8 ~~~~~~~~va~itlnrp~~--~~Nal~~~~~~~L~~~l~~~~~d~~vr-~vVl~~~~~~~F~aG~Dl~~~~~~~~----~   80 (708)
T PRK11154          8 TLNVREDNIAVITIDVPGE--KMNTLKAEFAEQVRAILKQLREDKELK-GVVFISGKPDNFIAGADINMLAACKT----A   80 (708)
T ss_pred             EEEEcCCCEEEEEECCCCC--CCcCCCHHHHHHHHHHHHHHHhCCCce-EEEEecCCCCCcccCcChHHhhccCC----H
Confidence            4566 689999999999 5  789999999999999999999999999 88888764 89999999998754211    1


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCC-cceeecccccCCCCchhh-HHHHHHHh
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~a~a~fg~pe~~lGl-~p~~gg~~~L~r~v  159 (708)
T PRK11154         81 QEAEALARQGQQLFAEIEALPIPVVAAIHGACLGGGLELALACHYRVCTDDPKTVLGLPEVQLGL-LPGSGGTQRLPRLI  159 (708)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEeCCCCceEeCccccCCC-CCCccHHhHHHhhc
Confidence            2223344556778899999999999999999999999999999999999873 589999999999 67776 78999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ  204 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~  204 (243)
                      | ..+|++|+++|++++|+||+++||||+++++ +++.+++.++|++
T Consensus       160 G-~~~A~~llltG~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~A~~  204 (708)
T PRK11154        160 G-VSTALDMILTGKQLRAKQALKLGLVDDVVPH-SILLEVAVELAKK  204 (708)
T ss_pred             C-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHh
Confidence            9 9999999999999999999999999999998 8899999999988

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=100.00  E-value=2.1e-40  Score=314.06  Aligned_cols=190  Identities=22%  Similarity=0.358  Sum_probs=168.4

Q ss_pred             eeEeCCEEEEEEcCC-CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEE-EecCCCccccCCChhhHHhcccccchHHH
Q 041046            4 LEKHGDVFVLTLTGS-SDVDEHRFGPSAIDSILSAIAKAKAEATPGSALI-TTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p-~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvv-l~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      .+.+++|++|+||+| +  +.|++|.+++.+|.+++++++.|++++ +|| ++|.|++||+|+|++++.....    ...
T Consensus         5 ~~~~~~Va~itlnrp~~--~~Nal~~~~~~eL~~~l~~~~~d~~vr-~VVl~~g~g~~FcaG~Dl~~~~~~~~----~~~   77 (699)
T TIGR02440         5 TVREDGIAILTIDVPGE--KMNTLKAEFADQVSEILSQLKRDKSIR-GLVLVSGKPDNFIAGADISMLAACQT----AGE   77 (699)
T ss_pred             EEcCCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEEeCCCCceeeccCchhhhccCC----hhH
Confidence            345689999999999 6  789999999999999999999999999 555 5788999999999998754211    222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-CcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ .++|++||+++|+ +|++| ++++++++| 
T Consensus        78 ~~~~~~~~~~~~~~l~~~~kPvIAaVnG~a~GgG~~LaLacD~ria~~~~~a~fg~pev~lGl-~p~~g~~~~L~r~vG-  155 (699)
T TIGR02440        78 AKALAQQGQVLFAELEALPIPVVAAIHGACLGGGLELALACHSRVCSDDDKTVLGLPEVQLGL-LPGSGGTQRLPRLIG-  155 (699)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCcEEechhhcccC-CCCccHHHHHHHhcC-
Confidence            3344556678889999999999999999999999999999999999976 3699999999999 77776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAK  203 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~  203 (243)
                      ..++++++++|++++|++|+++||||+++++ +++.+++.++|+
T Consensus       156 ~~~A~~llltG~~~~a~eA~~~GLV~~vv~~-~~l~~~a~~~A~  198 (699)
T TIGR02440       156 VSTALDMILTGKQLRAKQALKLGLVDDVVPQ-SILLDTAVEMAL  198 (699)
T ss_pred             HHHHHHHHHcCCcCCHHHHHhCCCCcEecCh-hHHHHHHHHHHH
Confidence            9999999999999999999999999999998 889999999998

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=1.8e-40  Score=270.14  Aligned_cols=220  Identities=21%  Similarity=0.307  Sum_probs=196.5

Q ss_pred             ceeeEeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.+++++++.+|.+| +|+  +.|+++.+++.++..+++.+..|+++. +++++|.|++||+|.|+..+....+ .+...
T Consensus         9 ~vv~~~~g~~~I~~~~~Pk--k~Nal~~e~y~~i~~al~~a~~dds~~-~tv~s~~G~~f~sG~Df~~~~~~~~-~d~~~   84 (266)
T KOG0016|consen    9 IVVTRENGPFFIALNIRPK--KKNALNREDYVYIQRALEEANDDDSVS-ITVLSSNGSYFCSGLDFSPFAKALD-DDANE   84 (266)
T ss_pred             eEEEecCCcEEEEecCCCc--ccccccHHHHHHHHHHHHHhhcccceE-EEEEecCccEEeeccccchhhhcCC-Ccccc
Confidence            567899999999999 998  899999999999999999999999987 9999999999999999998876433 12122


Q ss_pred             HH---HHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           81 RL---LYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        81 ~~---~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      ..   .+....+..++..+..+|||+||.|||+|+|.|..+...||++||+|+ ++|..|+..+|. .|.++ ++.+|++
T Consensus        85 ~~~~~~~~v~~~~~~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~V~A~Dk-a~F~TPfa~lGq-~PEG~Ss~t~p~i  162 (266)
T KOG0016|consen   85 ESDKASKFVKNVSCFVNTFINFPKPLVALVNGPAIGLGASILPLCDYVWASDK-AWFQTPFAKLGQ-SPEGCSSVTLPKI  162 (266)
T ss_pred             cchhhHHHHHHHHHHHHHHhcCCCCEEEEecCCccchhhHHhhhhheEEeccc-eEEeccchhcCC-CCCcceeeeehHh
Confidence            22   222233344889999999999999999999999999999999999966 999999999999 79888 5799999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      +| ...|.+|++.|++++|+||++.|||+++++. +++.+.++..++++++.+  |.++...|++++....+.+.
T Consensus       163 mG-~~~A~E~ll~~~kltA~Ea~~~glVskif~~-~tf~~~v~~~ikq~s~l~--p~sl~~~K~L~rs~~k~~l~  233 (266)
T KOG0016|consen  163 MG-SASANEMLLFGEKLTAQEACEKGLVSKIFPA-ETFNEEVLKKIKQYSKLS--PESLLGMKKLLRSNIKEELI  233 (266)
T ss_pred             hc-hhhHHHHHHhCCcccHHHHHhcCchhhhcCh-HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHH
Confidence            99 9999999999999999999999999999999 899999999999999988  99999999999988777665

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=100.00  E-value=7.6e-40  Score=311.01  Aligned_cols=199  Identities=23%  Similarity=0.346  Sum_probs=174.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVD-EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~-~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.++++++|++|+||+|.  + .|++|.+++.+|.+++++++.|++++++||++|.|++||+|+|++++.....    ..
T Consensus        15 ~~~~~~~gVa~itlnrP~--~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVvltg~g~~F~aG~Dl~~~~~~~~----~~   88 (737)
T TIGR02441        15 RHYEVKGDVAVVKIDSPN--SKVNTLSKELFAEFKEVMNELWTNEAIKSAVLISGKPGSFVAGADIQMIAACKT----AQ   88 (737)
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCCHHHHHHHHHHHHHHhhCCCCEEEEEEECCCCcceeCcCHHHHhccCC----hH
Confidence            567889999999999993  3 6999999999999999999999999955678999999999999999864211    23


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCC-cceeecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        89 ~~~~~~~~~~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD~ria~~~a~a~fglpEv~lGl-~Pg~Ggt~rLprliG  167 (737)
T TIGR02441        89 EVTQLSQEGQEMFERIEKSQKPIVAAISGSCLGGGLELALACHYRIATKDRKTLLGLPEVMLGL-LPGAGGTQRLPKLTG  167 (737)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCCEEEEcCCCCCeEecchhhhCC-CCCccHhhhHHHhhC
Confidence            344555667889999999999999999999999999999999999999874 589999999999 78876 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCCh------------HHHHHHHHHHHHHHhcC
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSE------------EQVAEASMRLAKQMAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~------------~~l~~~a~~~a~~la~~  208 (243)
                       ...|++++++|++++|++|+++||||+|+++.            +++.+.|.+++++++..
T Consensus       168 -~~~A~~l~ltG~~i~a~eA~~~GLVd~vv~~~~~~~~~l~~~~~~~l~~~A~~~a~~l~~~  228 (737)
T TIGR02441       168 -VPAALDMMLTGKKIRADRAKKMGIVDQLVDPLGPGLKPAEENTIEYLEEVAVKFAQGLANG  228 (737)
T ss_pred             -HHHHHHHHHcCCcCCHHHHHHCCCCeEecCCcccccccchhhhHHHHHHHHHHHHHHhhcc
Confidence             99999999999999999999999999999861            55788888888877653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=100.00  E-value=9.7e-40  Score=309.63  Aligned_cols=197  Identities=22%  Similarity=0.335  Sum_probs=174.9

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +.++. +++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|+|++++..... .. ..
T Consensus         8 i~~~~~~~gva~Itlnrp~--~~Nal~~~~~~eL~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~-~~   82 (714)
T TIGR02437         8 IQVTALEDGIAELKFDAPG--SVNKFDRATLASLDQALDAIKAQSSLK-GVILTSGKDAFIVGADITEFLGLFA-LP-DA   82 (714)
T ss_pred             EEEEEccCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCccccCcCHHHHhhccc-CC-HH
Confidence            45554 6889999999997  899999999999999999999999999 9999999999999999998864211 11 22


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        83 ~~~~~~~~~~~~~~~i~~~pkPvIAai~G~alGGGleLalacD~ria~~~-a~fglPEv~lGl-~Pg~Ggt~rL~rliG-  159 (714)
T TIGR02437        83 ELIQWLLFANSIFNKLEDLPVPTVAAINGIALGGGCECVLATDFRIADDT-AKIGLPETKLGI-MPGFGGTVRLPRVIG-  159 (714)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEecchhhcCC-CCCccHHHHHHHHhC-
Confidence            23344555678899999999999999999999999999999999999987 899999999999 78876 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      ...|++++++|++++|++|+++||||++++. +++.+++.++++++..
T Consensus       160 ~~~A~~llltG~~~~A~eA~~~GLvd~vv~~-~~l~~~a~~~a~~~~~  206 (714)
T TIGR02437       160 ADNALEWIASGKENRAEDALKVGAVDAVVTA-DKLGAAALQLLKDAIN  206 (714)
T ss_pred             HHHHHHHHHcCCcCCHHHHHHCCCCcEeeCh-hHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 8899999999988554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=100.00  E-value=5e-39  Score=294.29  Aligned_cols=218  Identities=18%  Similarity=0.217  Sum_probs=176.7

Q ss_pred             ceeeEeCCEEEEEEcCCC-----C---CCCCCCCHHHHHHHHHHHHHHH-hCCCCCeEEEEecC-CCccccCCChhhHHh
Q 041046            2 CTLEKHGDVFVLTLTGSS-----D---VDEHRFGPSAIDSILSAIAKAK-AEATPGSALITTSH-GKFFSNGLDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~-----~---~~~N~~~~~~~~~l~~~l~~~~-~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~   71 (243)
                      +.++++++|++|+||+|+     .   ++.|++|.+++.+|.+++++++ .|++++ +||+||. |++||+|.|++++..
T Consensus        13 v~~~~~g~Va~ItLnrpe~~~~~p~~~~k~Nal~~~~l~eL~~al~~~~~~d~~vR-vVVLtg~~Gk~FcaG~DL~~~~~   91 (546)
T TIGR03222        13 WKLTFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDAVQRIRFEHPEVR-TVVMTSGKDRVFCSGANIFMLGL   91 (546)
T ss_pred             EEEEeeCCEEEEEEecccccccCccccccCCCCCHHHHHHHHHHHHHHHhcCCCee-EEEEecCCCCCCcCCcCHHHHhc
Confidence            577889999999999972     0   1679999999999999999999 789999 9999987 589999999998753


Q ss_pred             cccccchHHHHHHH-HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-Ccceeecccc-cCCCCchh
Q 041046           72 AGSRAGARERLLYM-VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVD-IGATLPDY  148 (243)
Q Consensus        72 ~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~  148 (243)
                      ... .. ......+ ......+...+.++|||+||+|||+|+|+|++|+++||+||++++ .++|++||++ +|+ +|++
T Consensus        92 ~~~-~~-~~~~~~~~~~~~~~i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD~rvAs~~a~a~f~~pEv~~lGl-~P~~  168 (546)
T TIGR03222        92 STH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFLAAVNGTCAGGGYELALACDEIMLVDDRSSSVSLPEVPLLGV-LPGT  168 (546)
T ss_pred             ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhccCc-CCcc
Confidence            211 00 1111111 112234556778899999999999999999999999999999986 3799999997 999 6777


Q ss_pred             h-HHHHH--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCCh-----hHHHHHHH
Q 041046          149 F-TALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG-----EVYAEIRK  220 (243)
Q Consensus       149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~-----~~~~~~K~  220 (243)
                      | ..++.  +++| ..+|++|+++|++++|+||+++||||+|+++ +++.+++.++|++++..|+.|     ..+..+++
T Consensus       169 gg~~~l~~~~~vg-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~p~~~~~~~~~~~~~~~  246 (546)
T TIGR03222       169 GGLTRVTDKRRVR-RDHADIFCTIEEGVRGKRAKEWRLVDEVVKP-SQFDAAIAERAAELAAQSDRPADAKGVQLTPLER  246 (546)
T ss_pred             chhhhccccchhC-HHHHHHHHHcCCCccHHHHHHcCCceEEeCh-HHHHHHHHHHHHHHHhCCCCCcCCCceeeeehhh
Confidence            6 56776  6899 9999999999999999999999999999998 889999999999999988544     33344445


Q ss_pred             HhhhH
Q 041046          221 SLYPD  225 (243)
Q Consensus       221 ~l~~~  225 (243)
                      .++.+
T Consensus       247 ~~~~~  251 (546)
T TIGR03222       247 TIDED  251 (546)
T ss_pred             hcccC
Confidence            44443

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=100.00  E-value=8.3e-40  Score=258.91  Aligned_cols=209  Identities=18%  Similarity=0.307  Sum_probs=190.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARERLLYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   85 (243)
                      +.||..|-+|+|.  +.|+++.-++++|.++++.+..|+.++ ||++++. ++.||+|+||++-..     +.+.+...|
T Consensus        38 ~~GItvl~mNRpa--~kNsl~r~~~~~l~~~l~~lk~D~~~R-vvilrS~vpgvFCaGADLKER~~-----Ms~~Ev~~f  109 (291)
T KOG1679|consen   38 DEGITILNMNRPA--KKNSLGRVFVKQLREVLDELKYDNKVR-VVILRSLVPGVFCAGADLKERKT-----MSPSEVTRF  109 (291)
T ss_pred             CCCeEEEecCChh--hhccHHHHHHHHHHHHHHHHhhCCcee-EEEEecCCCceeecCcchHhhhc-----CCHHHHHHH
Confidence            4689999999998  899999999999999999999999999 8888775 699999999999764     347888999


Q ss_pred             HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046           86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      .+.+..++..+.++|.||||+|.|.++|||++++++||+|+++++ +.|+++|.++++ +|+.| +++|+|.+| .+.++
T Consensus       110 V~~lR~~~~dIe~Lp~P~IAAidG~ALGGGLElALACDiRva~s~-akmGLvET~lai-iPGaGGtQRLpR~vg-~alaK  186 (291)
T KOG1679|consen  110 VNGLRGLFNDIERLPQPVIAAIDGAALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGAGGTQRLPRIVG-VALAK  186 (291)
T ss_pred             HHHHHHHHHHHHhCCccceehhcchhcccchhhhhhccceehhhh-ccccccccceee-ecCCCccchhHHHHh-HHHHH
Confidence            999999999999999999999999999999999999999999988 899999999999 78876 799999999 99999


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCCh---HHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSE---EQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~---~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++|++.+++.||...||||.+|...   |...+.++++|+++-.+.  |.+++..|..++....-
T Consensus       187 ELIftarvl~g~eA~~lGlVnhvv~qneegdaa~~kal~lA~eilp~g--Piavr~aKlAIn~G~ev  251 (291)
T KOG1679|consen  187 ELIFTARVLNGAEAAKLGLVNHVVEQNEEGDAAYQKALELAREILPQG--PIAVRLAKLAINLGMEV  251 (291)
T ss_pred             hHhhhheeccchhHHhcchHHHHHhcCccccHHHHHHHHHHHHhccCC--chhhhHHHHHhccCcee
Confidence            999999999999999999999999753   356777889999997766  99999999988776443

>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]

Probab=100.00  E-value=1.1e-39  Score=258.63  Aligned_cols=215  Identities=20%  Similarity=0.354  Sum_probs=186.8

Q ss_pred             ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--C-CccccCCChhhHHhcccccc
Q 041046            2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--G-KFFSNGLDLAWAQAAGSRAG   77 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--g-~~F~~G~dl~~~~~~~~~~~   77 (243)
                      |.|++. ++|+.|+||||.  ..|++.+..+.|+.++|..+..|++|. |||+||.  | ..||+|.|.+--.....-.+
T Consensus        20 I~Y~~~~~giakItinRPe--vrNAfrP~TV~Em~~Af~~Ar~d~~vG-vi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~   96 (282)
T COG0447          20 ITYEKSVDGIAKITINRPE--VRNAFRPKTVDEMIDAFADARDDPNVG-VILLTGNGDGDKAFCSGGDQKVRGDSGGYVD   96 (282)
T ss_pred             eEEeeccCceEEEEecChh--hhccCCCccHHHHHHHHHhhhcCCCcc-EEEEecCCCCCeeeecCCCceecccCCCccC
Confidence            678888 899999999997  899999999999999999999999998 9999985  4 89999999875433111001


Q ss_pred             hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHh
Q 041046           78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKV  157 (243)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~  157 (243)
                       ++...++  .+.++-+.|+.+||||||.|+|+++|||-.+-+.||+.||+++ +.|++...++|-.=+++|+.+|.+.+
T Consensus        97 -d~~~~rL--nvLdlQrlIR~~PKpViA~V~G~AiGGGhvlhvvCDLTiAa~n-A~FgQTgp~VGSFD~G~Gs~ylar~V  172 (282)
T COG0447          97 -DDGIPRL--NVLDLQRLIRTMPKPVIAMVAGYAIGGGHVLHVVCDLTIAADN-AIFGQTGPKVGSFDGGYGSSYLARIV  172 (282)
T ss_pred             -CccCccc--chhhHHHHHHhCCcceEEEEeeEeccCccEEEEEeeeeeehhc-chhcCCCCCcccccCcccHHHHHHHh
Confidence             1111111  2345666778899999999999999999999999999999998 89999999999944777899999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | .++|+++.+.++.++|+||+++|+||.|||- ++|+++..+|+++|.++|  |.+++.+|..++.+..
T Consensus       173 G-qKkArEIwfLcR~Y~A~eal~MGlVN~Vvp~-~~LE~e~v~W~~E~l~kS--P~AlR~LK~Afnad~D  238 (282)
T COG0447         173 G-QKKAREIWFLCRQYDAEEALDMGLVNTVVPH-ADLEKETVQWAREMLAKS--PTALRMLKAAFNADCD  238 (282)
T ss_pred             h-hhhhHHhhhhhhhccHHHHHhcCceeeeccH-HHHHHHHHHHHHHHHhcC--hHHHHHHHHHhcCCCc
Confidence            9 9999999999999999999999999999998 999999999999999999  9999999999886643

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=100.00  E-value=5.8e-38  Score=288.10  Aligned_cols=205  Identities=18%  Similarity=0.228  Sum_probs=169.9

Q ss_pred             ceeeEeCCEEEEEEcCCC----C----CCCCCCCHHHHHHHHHHHHHHH-hCCCCCeEEEEecCC-CccccCCChhhHHh
Q 041046            2 CTLEKHGDVFVLTLTGSS----D----VDEHRFGPSAIDSILSAIAKAK-AEATPGSALITTSHG-KFFSNGLDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~----~----~~~N~~~~~~~~~l~~~l~~~~-~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~   71 (243)
                      +.++++++|++|+||+|+    .    ++.|+++.+|+.+|.+++++++ ++++++ +||++|.+ ++||+|.|++++..
T Consensus        17 ~~~e~~~~Va~ItLnrpe~~~~rP~~~~~~Nal~~~m~~eL~~al~~~~~~d~~vr-vVVLtg~ggk~FcaG~DL~~~~~   95 (550)
T PRK08184         17 WKLSFDGPVATLTMDVDEDGGLRPGYKLKLNSYDLGVDIELHDALQRIRFEHPEVR-TVVVTSAKDRVFCSGANIFMLGG   95 (550)
T ss_pred             EEEEeeCCEEEEEEcCccccccCcccccCCCCCCHHHHHHHHHHHHHHHhcCCCeE-EEEEecCCCCCCCCccCHHhHhc
Confidence            567889999999999752    0    1579999999999999999999 789999 99999974 89999999998754


Q ss_pred             cccccchHHHHHHHH-HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecC-Ccceeecccc-cCCCCchh
Q 041046           72 AGSRAGARERLLYMV-ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVD-IGATLPDY  148 (243)
Q Consensus        72 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~p~~  148 (243)
                      ... .. ........ .....+...+.++||||||+|||+|+|+|++|+++|||||++++ .++|++||++ +|+ +|++
T Consensus        96 ~~~-~~-~~~~~~~~~~~~~~l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD~rIas~~~~a~fg~pEv~~~Gl-~P~~  172 (550)
T PRK08184         96 SSH-AW-KVNFCKFTNETRNGIEDSSRHSGLKFIAAVNGTCAGGGYELALACDEIVLVDDRSSAVSLPEVPLLGV-LPGT  172 (550)
T ss_pred             ccc-ch-hhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHhCCEEEEecCCCcEEEccchhcccc-CCCc
Confidence            211 00 11111111 11223455778899999999999999999999999999999976 3689999997 999 7777


Q ss_pred             h-HHHHH--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCCh
Q 041046          149 F-TALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG  212 (243)
Q Consensus       149 g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~  212 (243)
                      | ..+++  +++| ...+++++++|+.++|+||+++||||+++++ +++.+++.++|++++..|+.+
T Consensus       173 gg~~rl~~~~~vg-~~~A~~llltG~~i~AeeA~~~GLVd~vv~~-d~l~~~a~~~A~~ia~~~~~~  237 (550)
T PRK08184        173 GGLTRVTDKRKVR-RDLADIFCTIEEGVRGKRAVDWRLVDEVVKP-SKFDAKVAERAAELAAASDRP  237 (550)
T ss_pred             chHHHhhhhhhcC-HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCCCCC
Confidence            6 67887  6799 9999999999999999999999999999998 899999999999999997443

>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]

Probab=100.00  E-value=3.5e-34  Score=225.38  Aligned_cols=210  Identities=23%  Similarity=0.312  Sum_probs=190.0

Q ss_pred             eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046            4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   83 (243)
                      ++-+++|-.|++|+|+  +.|+++.+|+.+|.+.+....++.++| +||++..|+.||+|-||+++.+...    .+.-.
T Consensus        36 ~~~~~gvR~i~l~npK--k~NtLSLaM~~~Lq~~ll~d~d~~dlr-~viita~GkifSaGH~LKELt~e~g----~d~ha  108 (287)
T KOG1682|consen   36 VKEHNGVREITLNNPK--KLNTLSLAMMCALQDALLKDKDNLDLR-CVIITAQGKIFSAGHNLKELTNEPG----SDIHA  108 (287)
T ss_pred             cccccceeeeeecCcc--ccchhhHHHHHHHHHHHhhccccccee-EEEEecCCccccccccHHHhhcCcc----chHHH
Confidence            3456889999999998  899999999999999999999999999 9999999999999999999987432    44556


Q ss_pred             HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHH
Q 041046           84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATAR  163 (243)
Q Consensus        84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a  163 (243)
                      +.+....+++.-|+++|+|||+-|||.|..+|++|...||+++++++ +.|..|...+|+ |......-+.|.++ ...+
T Consensus       109 evFqtc~dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~vVa~k~-SkF~tPG~~vGl-FCSTPGvAlaRavp-Rkva  185 (287)
T KOG1682|consen  109 EVFQTCTDVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDMVVATKN-SKFSTPGAGVGL-FCSTPGVALARAVP-RKVA  185 (287)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEecchhhhccceEEEeeeEEEEecC-ccccCCCCceee-EecCcchhHhhhcc-hhHH
Confidence            67778889999999999999999999999999999999999999988 899999999999 77776777889999 8888


Q ss_pred             HHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          164 RDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .+|++||.++++++|+..||++++||. +++..++.++++.|..++  +.+++.-|.-.+...
T Consensus       186 ~~ML~Tg~Pi~~eeAl~sGlvskvVp~-~el~~e~~~i~~~i~~~s--rav~slgk~f~y~q~  245 (287)
T KOG1682|consen  186 AYMLMTGLPITGEEALISGLVSKVVPA-EELDKEIEEITNAIKAKS--RAVISLGKEFYYKQL  245 (287)
T ss_pred             HHHHHhCCCCchHHHHHhhhhhhcCCH-HHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHH
Confidence            999999999999999999999999998 999999999999999988  888887777665543

>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=99.97  E-value=2.2e-30  Score=219.51  Aligned_cols=199  Identities=19%  Similarity=0.232  Sum_probs=173.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++-.+....|++|||+  ..|++|.+|...+.-.+..++.++.++ +||+.|. |+.||+|.|+........ +++..
T Consensus        40 VL~e~~~~~r~itLNRPK--aLNAlnleMv~~~~~~L~~we~s~~~k-~vIlkgs~~raFCAGgDI~~~ae~~~-d~~~~  115 (401)
T KOG1684|consen   40 VLVEGKGCARVITLNRPK--ALNALNLEMVLSIYPKLVEWEKSPLVK-LVILKGSGGRAFCAGGDIKAVAESIK-DKETP  115 (401)
T ss_pred             eEEecCCceeEEEecCch--hhccccHHHHHHHHHHHHhhccCCCce-EEEEecCCCceeecCccHHHHHHHhh-cCCch
Confidence            567778889999999997  789999999999999999999999999 8888888 599999999986655433 45566


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHH-HHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~  159 (243)
                      ..+.++..-+.+...+.++.||.||.++|-..|||+.|+.+--||||+|+ +.|.+||..+|+ +|+.|+. ++++.-| 
T Consensus       116 ~~~~fF~~eYsl~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATer-T~~AmPEt~IGl-fPDVG~Sy~lsrlpg-  192 (401)
T KOG1684|consen  116 EVKKFFTEEYSLNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATER-TVFAMPETGIGL-FPDVGASYFLSRLPG-  192 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceEEEeeceeecCCcceeecceeEEeecc-ceeccccccccc-ccCccceeehhhCcc-
Confidence            78889999999999999999999999999999999999999999999988 899999999999 9999964 5555555 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                       ....++.+||.++++.+|+..||..+.|++ +++..--.++.+.+...|
T Consensus       193 -~lg~YLgLTG~rl~GaD~~~~GlATHyv~S-~~l~~Lee~L~~~l~~dp  240 (401)
T KOG1684|consen  193 -YLGLYLGLTGQRLSGADALRCGLATHYVPS-EKLPSLEERLLKNLNDDP  240 (401)
T ss_pred             -HHHHhhhhccceecchHHHHhcchhhccch-hhhhHHHHHHhhhcCCCc
Confidence             777899999999999999999999999998 777555555554555443

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.86  E-value=6.2e-21  Score=154.15  Aligned_cols=152  Identities=22%  Similarity=0.262  Sum_probs=117.8

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|.++.+       ++..+...+.+.++.+.+++ ++ .|++.    .=|.|.++..                    .
T Consensus         1 ~~vv~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~vvl~----InSpGG~v~~--------------------~   47 (187)
T cd07020           1 VYVLEINGA-------ITPATADYLERAIDQAEEGG-AD-ALIIE----LDTPGGLLDS--------------------T   47 (187)
T ss_pred             CEEEEEeeE-------EChHHHHHHHHHHHHHHhCC-CC-EEEEE----EECCCCCHHH--------------------H
Confidence            356777755       77788899999999999765 66 45553    1233333332                    2


Q ss_pred             HHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchh---------------hHH
Q 041046           90 RPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY---------------FTA  151 (243)
Q Consensus        90 ~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~---------------g~~  151 (243)
                      ..++.++..+|||+|++++   |+|.|+|+.++++||+++++++ +.|+.+++..+. ++..               ...
T Consensus        48 ~~i~~~l~~~~kPvia~v~~~~G~AasgG~~iala~D~iva~p~-a~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  125 (187)
T cd07020          48 REIVQAILASPVPVVVYVYPSGARAASAGTYILLAAHIAAMAPG-TNIGAAHPVAIG-GGGGSDPVMEKKILNDAVAYIR  125 (187)
T ss_pred             HHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHHhCCceeECCC-CcEEeccccccC-CCCcchHHHHHHHHHHHHHHHH
Confidence            3455567789999999999   9999999999999999999988 899999988554 3322               245


Q ss_pred             HHHHHhCCH--HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046          152 LFRAKVGSA--TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA  197 (243)
Q Consensus       152 ~l~~~~g~~--~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~  197 (243)
                      .++++.| .  ..+++++++|+.++|+||+++||+|+++++.+++...
T Consensus       126 ~l~~~~G-~~~~~a~~~l~~g~~~~a~eA~~~Glvd~v~~~~~~~~~~  172 (187)
T cd07020         126 SLAELRG-RNAEWAEKAVRESLSLTAEEALKLGVIDLIAADLNELLKK  172 (187)
T ss_pred             HHHHHcC-CCHHHHHHHHHcCCeecHHHHHHcCCcccccCCHHHHHHH
Confidence            7888888 5  6889999999999999999999999999984455543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.85  E-value=2.2e-20  Score=149.72  Aligned_cols=143  Identities=18%  Similarity=0.211  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC
Q 041046           29 SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        29 ~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~  108 (243)
                      -...+|.++++++++|++++ +||+++    +|.|.|+....                 .+.+.+..+.+++||+||+++
T Consensus        22 ~~~~~l~~~l~~a~~d~~v~-~vvl~~----~~~gg~~~~~~-----------------~~~~~i~~~~~~~kpVia~v~   79 (177)
T cd07014          22 VSGDTTAAQIRDARLDPKVK-AIVLRV----NSPGGSVTASE-----------------VIRAELAAARAAGKPVVASGG   79 (177)
T ss_pred             cCHHHHHHHHHHHhcCCCce-EEEEEe----eCCCcCHHHHH-----------------HHHHHHHHHHhCCCCEEEEEC
Confidence            45789999999999999999 899986    68888776422                 234567777889999999999


Q ss_pred             cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HH--------HHHHHhC-CHHHHHHHHhccCCCCHHHH
Q 041046          109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TA--------LFRAKVG-SATARRDVLLRAKKIKGEEA  178 (243)
Q Consensus       109 G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~--------~l~~~~g-~~~~a~~l~l~g~~~~a~eA  178 (243)
                      |.|.|+|+.++++||+++++++ +.|+.+.+..+. -+... ..        .+.+..| .....++++..|..++|++|
T Consensus        80 G~a~g~g~~la~a~D~i~a~~~-a~~~~~G~~~~~-~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A  157 (177)
T cd07014          80 GNAASGGYWISTPANYIVANPS-TLVGSIGIFGVQ-LADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDA  157 (177)
T ss_pred             CchhHHHHHHHHhCCEEEECCC-CeEEEechHhhH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHH
Confidence            9999999999999999999988 889988766553 12111 11        3333333 15667888999999999999


Q ss_pred             HHcCchhhhcCChHHHHH
Q 041046          179 LRMGLVQAAYDSEEQVAE  196 (243)
Q Consensus       179 ~~~Glv~~v~~~~~~l~~  196 (243)
                      ++.||||++.+. +++.+
T Consensus       158 ~~~GLVD~v~~~-~e~~~  174 (177)
T cd07014         158 KANGLVDSLGSF-DDAVA  174 (177)
T ss_pred             HHcCCcccCCCH-HHHHH
Confidence            999999999986 66654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.72  E-value=1.7e-17  Score=136.62  Aligned_cols=104  Identities=19%  Similarity=0.244  Sum_probs=81.3

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHh
Q 041046            9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVES   88 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      +|++|.++.|=+...+.-+...+.++.++|+.+.+|++++ +||++    .||.|.|+.....                 
T Consensus         1 ~i~v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~----~~s~Gg~~~~~~~-----------------   58 (211)
T cd07019           1 SIGVVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLR----VNSPGGSVTASEV-----------------   58 (211)
T ss_pred             CEEEEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCce-EEEEE----EcCCCcCHHHHHH-----------------
Confidence            3566666543211233334556899999999999999999 88886    7999999976532                 


Q ss_pred             HHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCccee
Q 041046           89 FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY  135 (243)
Q Consensus        89 ~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~  135 (243)
                      +.+.+..+..++||+||.++|.|.|+|+.|+++||++|++++ +.++
T Consensus        59 ~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~aD~i~a~~~-a~~g  104 (211)
T cd07019          59 IRAELAAARAAGKPVVVSAGGAAASGGYWISTPANYIVANPS-TLTG  104 (211)
T ss_pred             HHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEcCC-CEEE
Confidence            234566778899999999999999999999999999999987 6665

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.67  E-value=5e-16  Score=127.59  Aligned_cols=96  Identities=18%  Similarity=0.285  Sum_probs=79.6

Q ss_pred             EEEEEEcCCCCCCCCCCC---HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046           10 VFVLTLTGSSDVDEHRFG---PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~---~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      |++|.++.+       ++   ..++.+|.++|+.+++|++++ +|++++    +|.|.|+....                
T Consensus         2 v~vi~i~g~-------i~~~~~~~~~~l~~~l~~a~~d~~i~-~ivl~~----~s~Gg~~~~~~----------------   53 (208)
T cd07023           2 IAVIDIEGT-------ISDGGGIGADSLIEQLRKAREDDSVK-AVVLRI----NSPGGSVVASE----------------   53 (208)
T ss_pred             EEEEEEEEE-------EcCCCCCCHHHHHHHHHHHHhCCCCc-EEEEEE----ECCCCCHHHHH----------------
Confidence            677777765       54   789999999999999999999 888877    57888876522                


Q ss_pred             HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCccee
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLY  135 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~  135 (243)
                       .+.+.+..+..++||+||+++|.|.|+|+.++++||.++++++ +.|+
T Consensus        54 -~i~~~i~~~~~~~kpvia~v~g~~~s~g~~lA~aaD~i~a~~~-s~~g  100 (208)
T cd07023          54 -EIYREIRRLRKAKKPVVASMGDVAASGGYYIAAAADKIVANPT-TITG  100 (208)
T ss_pred             -HHHHHHHHHHhcCCcEEEEECCcchhHHHHHHhhCCEEEECCC-CeEE
Confidence             1344566777889999999999999999999999999999987 6665

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.66  E-value=1.6e-15  Score=119.55  Aligned_cols=135  Identities=21%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA  105 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  105 (243)
                      ++..++++|.+.|+.++.|+.++ .|++..    .|.|.++...                    ..+...+..++||+|+
T Consensus         8 I~~~~~~~l~~~l~~a~~d~~~~-~ivl~~----~s~Gg~~~~~--------------------~~i~~~l~~~~kpvva   62 (161)
T cd00394           8 IEDVSADQLAAQIRFAEADNSVK-AIVLEV----NTPGGRVDAG--------------------MNIVDALQASRKPVIA   62 (161)
T ss_pred             EccchHHHHHHHHHHHHhCCCCc-eEEEEE----ECCCcCHHHH--------------------HHHHHHHHHhCCCEEE
Confidence            77789999999999999999999 788854    5677765432                    3344566678899999


Q ss_pred             EECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch----------hh---HHHHHHHh------CCHHHHHHH
Q 041046          106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD----------YF---TALFRAKV------GSATARRDV  166 (243)
Q Consensus       106 ~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~----------~g---~~~l~~~~------g~~~~a~~l  166 (243)
                      .++|.|.++|+.++++||.|++.++ +.|++..+..+.....          .-   ...+...+      . .....+.
T Consensus        63 ~~~g~~~s~g~~la~~~d~~~~~~~-a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~-~~~~~~~  140 (161)
T cd00394          63 YVGGQAASAGYYIATAANKIVMAPG-TRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQT-TEKLEED  140 (161)
T ss_pred             EECChhHHHHHHHHhCCCEEEECCC-CEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence            9999999999999999999999988 7898877766552111          00   01122221      2 3345677


Q ss_pred             HhccCCCCHHHHHHcCchhhh
Q 041046          167 LLRAKKIKGEEALRMGLVQAA  187 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      +..+..++|+||+++||||+|
T Consensus       141 ~~~~~~~~a~eA~~~GLvD~i  161 (161)
T cd00394         141 IEKDLVLTAQEALEYGLVDAL  161 (161)
T ss_pred             hcCCcEEcHHHHHHcCCcCcC
Confidence            788999999999999999975

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.65  E-value=1.2e-15  Score=125.77  Aligned_cols=90  Identities=24%  Similarity=0.224  Sum_probs=69.5

Q ss_pred             CCC-CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           23 EHR-FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        23 ~N~-~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      .|+ ++..++.+|.++|+++++|++++ +||++.    +|.|.++....                 .+.+.+..+.. +|
T Consensus        18 ~~~~~~~~~~~~l~~~l~~a~~d~~i~-~Vvl~~----~s~gg~~~~~~-----------------~l~~~l~~~~~-~K   74 (214)
T cd07022          18 LEASSGLTSYEGIAAAIRAALADPDVR-AIVLDI----DSPGGEVAGVF-----------------ELADAIRAARA-GK   74 (214)
T ss_pred             ccCCCCcccHHHHHHHHHHHhhCCCCc-EEEEEE----eCCCCcHHHHH-----------------HHHHHHHHHhc-CC
Confidence            453 55789999999999999999999 788864    56666544321                 12333444444 69


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceee
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM  136 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~  136 (243)
                      ||||+++|.|.|+|+.++++||+++++++ +.|+.
T Consensus        75 pViA~v~g~a~s~gy~lA~~aD~i~a~~~-a~~g~  108 (214)
T cd07022          75 PIVAFVNGLAASAAYWIASAADRIVVTPT-AGVGS  108 (214)
T ss_pred             CEEEEECCchhhHHHHHHhcCCEEEEcCC-CeEEe
Confidence            99999999999999999999999999987 66653

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.60  E-value=1.2e-14  Score=119.38  Aligned_cols=154  Identities=17%  Similarity=0.253  Sum_probs=104.4

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|.++.+       ++ ....+|.+.|+.+.+|++++ .||++.    .|.|.++...                    
T Consensus         2 v~vi~i~g~-------i~-~s~~~l~~~l~~a~~d~~i~-~vvl~~----~s~Gg~~~~~--------------------   48 (207)
T TIGR00706         2 IAILPVSGA-------IA-VSPEDFDKKIKRIKDDKSIK-ALLLRI----NSPGGTVVAS--------------------   48 (207)
T ss_pred             EEEEEEEEE-------Ee-cCHHHHHHHHHHHhhCCCcc-EEEEEe----cCCCCCHHHH--------------------
Confidence            677888765       33 34678999999999999999 888876    3677766532                    


Q ss_pred             HHHHHHHhcCC--CcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC-----------
Q 041046           90 RPVVAAMMDLP--MPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT-----------  144 (243)
Q Consensus        90 ~~~~~~l~~~~--kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~-----------  144 (243)
                      .++...|.+++  ||+|+.++|.|.|+|+.++++||.++++++ +.++...+.            +|+.           
T Consensus        49 ~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~aaD~i~a~p~-a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~  127 (207)
T TIGR00706        49 EEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMAADEIVANPG-TITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKD  127 (207)
T ss_pred             HHHHHHHHHhcCCCCEEEEECCccchHHHHHHhcCCEEEECCC-CeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcC
Confidence            22344455555  999999999999999999999999999987 666532221            2221           


Q ss_pred             -------CchhhHHHH---------------H--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHH
Q 041046          145 -------LPDYFTALF---------------R--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR  200 (243)
Q Consensus       145 -------~p~~g~~~l---------------~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~  200 (243)
                             +..-.-..+               .  |.+. .....+ +..|+.+++++|++.||||++... +++.+.+.+
T Consensus       128 ~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va~~R~~~-~~~~~~-~~~~~~~~~~~A~~~gLvD~i~~~-~~~~~~~~~  204 (207)
T TIGR00706       128 IGSPTRELTPEERDILQNLVNESYEQFVQVVAKGRNLP-VEDVKK-FADGRVFTGRQALKLRLVDKLGTE-DDALKWLAE  204 (207)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHH-HhcCCcccHHHHHHcCCCcccCCH-HHHHHHHHH
Confidence                   000000111               1  1122 222233 467899999999999999999865 665555443

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.58  E-value=1.1e-14  Score=114.70  Aligned_cols=129  Identities=16%  Similarity=0.183  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC
Q 041046           29 SAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        29 ~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~  108 (243)
                      .+.+.+.+.|+.+..+..+  .+.+.+.|+      ++..                    ...++..+..++||+++.++
T Consensus        15 ~~~~~~~~~l~~~~~~~~i--~l~inspGG------~~~~--------------------~~~i~~~i~~~~~pvi~~v~   66 (160)
T cd07016          15 VTAKEFKDALDALGDDSDI--TVRINSPGG------DVFA--------------------GLAIYNALKRHKGKVTVKID   66 (160)
T ss_pred             cCHHHHHHHHHhccCCCCE--EEEEECCCC------CHHH--------------------HHHHHHHHHhcCCCEEEEEc
Confidence            5778889999998887444  466655543      2221                    23466677788999999999


Q ss_pred             cccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh----------------HHHHHHHhCC-HHHHHHHHhccC
Q 041046          109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF----------------TALFRAKVGS-ATARRDVLLRAK  171 (243)
Q Consensus       109 G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g----------------~~~l~~~~g~-~~~a~~l~l~g~  171 (243)
                      |.|.|+|+.++++||.|+++++ +.|.++....+. .+...                ...+.++.|. .....+++..+.
T Consensus        67 g~a~s~g~~ia~a~d~~~~~~~-a~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~  144 (160)
T cd07016          67 GLAASAASVIAMAGDEVEMPPN-AMLMIHNPSTGA-AGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAET  144 (160)
T ss_pred             chHHhHHHHHHhcCCeEEECCC-cEEEEECCcccc-CcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCe
Confidence            9999999999999999999988 889987776665 33321                2236677774 356667777677


Q ss_pred             CCCHHHHHHcCchhhh
Q 041046          172 KIKGEEALRMGLVQAA  187 (243)
Q Consensus       172 ~~~a~eA~~~Glv~~v  187 (243)
                      .++|+||+++||+|+|
T Consensus       145 ~l~a~eA~~~GliD~v  160 (160)
T cd07016         145 WLTAQEAVELGFADEI  160 (160)
T ss_pred             ECcHHHHHHcCCCCcC
Confidence            8999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.58  E-value=1.2e-14  Score=135.62  Aligned_cols=173  Identities=20%  Similarity=0.258  Sum_probs=120.2

Q ss_pred             EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHH
Q 041046            6 KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM   85 (243)
Q Consensus         6 ~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~   85 (243)
                      .++.|++|.++.+-....+..+....+.+.+.++++.+|++|| .||++-.    |.|.+....                
T Consensus       306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~Vk-aIVLrin----SpGGs~~as----------------  364 (584)
T TIGR00705       306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIK-AVVLRIN----SPGGSVFAS----------------  364 (584)
T ss_pred             CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCce-EEEEEec----CCCCCHHHH----------------
Confidence            4578999999866311233334445678889999999999999 8888753    222222111                


Q ss_pred             HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcce------eecc------cccCCCCchhh-HH-
Q 041046           86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVL------YMSE------VDIGATLPDYF-TA-  151 (243)
Q Consensus        86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f------~~pe------~~~Gl~~p~~g-~~-  151 (243)
                       +.+.+.+.++...+||||+.++|.|.+||+.++++||.++|++. +.+      +.+.      .++|+. |... +. 
T Consensus       365 -e~i~~~i~~~~~~gKPVva~~~g~aaSggY~iA~aaD~I~a~p~-t~~GSIGv~~~~~~~~~~l~klGi~-~~~~~t~~  441 (584)
T TIGR00705       365 -EIIRRELARAQARGKPVIVSMGAMAASGGYWIASAADYIVASPN-TITGSIGVFSVLPTFENSLDRIGVH-VDGVSTHE  441 (584)
T ss_pred             -HHHHHHHHHHHhCCCcEEEEECCccccHHHHHHHhCCEEEECCC-CeeecCEEEEEccCHHHHHHhcCCc-eEEEeccC
Confidence             11233445566778999999999999999999999999999887 554      4442      467773 4322 11 


Q ss_pred             ---------------------------HHHHHhCCHHH-----HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHH
Q 041046          152 ---------------------------LFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM  199 (243)
Q Consensus       152 ---------------------------~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~  199 (243)
                                                 .+..+++ ..+     ..+.+.+|+.+++++|+++||||++..    + ++|.
T Consensus       442 ~~~~s~~~~~t~~~~~~~~~~l~~~y~~F~~~Va-~~R~l~~e~v~~ia~Grv~tg~eA~~~GLVD~ig~----~-~~Ai  515 (584)
T TIGR00705       442 LANVSLLRPLTAEDQAIMQLSVEAGYRRFLSVVS-AGRNLTPTQVDKVAQGRVWTGEDAVSNGLVDALGG----L-DEAV  515 (584)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhCCCCHHHHHHHHhCCCcCHHHHHHcCCcccCCC----H-HHHH
Confidence                                       1222444 333     567788999999999999999999953    2 5577


Q ss_pred             HHHHHHhcC
Q 041046          200 RLAKQMAGR  208 (243)
Q Consensus       200 ~~a~~la~~  208 (243)
                      +.|+++++.
T Consensus       516 ~~a~~la~~  524 (584)
T TIGR00705       516 AKAAKLAHC  524 (584)
T ss_pred             HHHHHHcCC
Confidence            777787776

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.50  E-value=8.3e-13  Score=105.60  Aligned_cols=151  Identities=23%  Similarity=0.320  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|.++.+       +++...+.+.+.|+++.+++ ++ .|++.=    =|.|.++..                    .
T Consensus         1 v~vi~i~g~-------I~~~~~~~l~~~l~~a~~~~-~~-~ivl~i----nspGG~v~~--------------------~   47 (178)
T cd07021           1 VYVIPIEGE-------IDPGLAAFVERALKEAKEEG-AD-AVVLDI----DTPGGRVDS--------------------A   47 (178)
T ss_pred             CEEEEEeeE-------ECHHHHHHHHHHHHHHHhCC-CC-eEEEEE----ECcCCCHHH--------------------H
Confidence            456777765       78888999999999999886 55 444421    233333332                    3


Q ss_pred             HHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch-----h----h---HHHHHHHh
Q 041046           90 RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD-----Y----F---TALFRAKV  157 (243)
Q Consensus        90 ~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-----~----g---~~~l~~~~  157 (243)
                      ..++..|.++++|+|+.|+|.|.++|+.++++||+++++++ +.++.+++-.+.  ++     -    .   ..-+.++-
T Consensus        48 ~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d~i~m~p~-a~iG~~~~v~~~--~~~~~~~K~~~~~~~~~~~~A~~~  124 (178)
T cd07021          48 LEIVDLILNSPIPTIAYVNDRAASAGALIALAADEIYMAPG-ATIGAAEPIPGD--GNGAADEKVQSYWRAKMRAAAEKK  124 (178)
T ss_pred             HHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCCeEEECCC-CeEecCeeEcCC--CccchhHHHHHHHHHHHHHHHHHh
Confidence            55667888899999999999999999999999999999988 888876543221  11     0    0   01122333


Q ss_pred             C-CHHHHHHHHhcc-------------CCCCHHHHHHcCchhhhcCChHHHHH
Q 041046          158 G-SATARRDVLLRA-------------KKIKGEEALRMGLVQAAYDSEEQVAE  196 (243)
Q Consensus       158 g-~~~~a~~l~l~g-------------~~~~a~eA~~~Glv~~v~~~~~~l~~  196 (243)
                      | +...+..|+-..             ..++++||++.|++|.+.++.++|..
T Consensus       125 gr~~~~a~~mv~~~~~v~~~~~~~~~~l~lta~eA~~~g~~d~ia~~~~~ll~  177 (178)
T cd07021         125 GRDPDIAEAMVDKDIEVPGVGIKGGELLTLTADEALKVGYAEGIAGSLDELLV  177 (178)
T ss_pred             CCCHHHHHHHhhhhcccccccccccceeeeCHHHHHHhCCeEEEECCHHHHhh
Confidence            3 255566666544             37999999999999999998776653

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.45  E-value=4.6e-13  Score=111.07  Aligned_cols=88  Identities=16%  Similarity=0.195  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA  105 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  105 (243)
                      -+...+.++.+.|+++.+|++|+ +||++..+..| ++.+++++                    .+.+..+...+|||||
T Consensus        26 ~~~~~~~~l~~~l~~a~~d~~ik-~vvL~~~s~gg-~~~~~~el--------------------~~~i~~~~~~~kpVia   83 (222)
T cd07018          26 SSELSLRDLLEALEKAAEDDRIK-GIVLDLDGLSG-GLAKLEEL--------------------RQALERFRASGKPVIA   83 (222)
T ss_pred             cCCccHHHHHHHHHHHhcCCCeE-EEEEECCCCCC-CHHHHHHH--------------------HHHHHHHHHhCCeEEE
Confidence            34678899999999999999999 99999877666 54444433                    3344455567999999


Q ss_pred             EECcccchhHHHHHHhccEEEEecCCcceeec
Q 041046          106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMS  137 (243)
Q Consensus       106 ~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~p  137 (243)
                      .++| |.++|+.++++||.+++.+. +.++..
T Consensus        84 ~~~~-~~sggy~lasaad~I~a~p~-~~vg~i  113 (222)
T cd07018          84 YADG-YSQGQYYLASAADEIYLNPS-GSVELT  113 (222)
T ss_pred             EeCC-CCchhhhhhhhCCEEEECCC-ceEEee
Confidence            9998 88999999999999999887 777753

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.26  E-value=3.4e-10  Score=89.81  Aligned_cols=152  Identities=18%  Similarity=0.235  Sum_probs=107.4

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |++|.++..       +++.+...|.+.++.++++ ..+ .|++.    .=|.|..+..                    .
T Consensus         1 v~vi~i~G~-------I~~~~~~~l~~~l~~A~~~-~~~-~i~l~----inSPGG~v~~--------------------~   47 (172)
T cd07015           1 VYVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIE----LDTPGGRADA--------------------A   47 (172)
T ss_pred             CEEEEEeeE-------ECHhHHHHHHHHHHHHhcC-CCC-eEEEE----EECCCCCHHH--------------------H
Confidence            356677654       7888889999999999875 455 45542    2334444432                    2


Q ss_pred             HHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCCCCc-----hhh----HH------
Q 041046           90 RPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLP-----DYF----TA------  151 (243)
Q Consensus        90 ~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p-----~~g----~~------  151 (243)
                      ..++..+...++||++.+.   |.|.++|..++++||.+++.++ +.++...+..|. .+     ...    ..      
T Consensus        48 ~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~a~~~i~m~p~-s~iG~~~pi~~~-g~~~~~~~~~~ki~~~~~~~~r  125 (172)
T cd07015          48 GNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY-SQNGSIIEAPPKITNYFIAYIK  125 (172)
T ss_pred             HHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHHhcCceEECCC-CEEEEccccccC-CCCCccccchHHHHHHHHHHHH
Confidence            3445566778999999999   9999999999999999999998 778866654332 12     100    11      


Q ss_pred             HHHHHhC-CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHH
Q 041046          152 LFRAKVG-SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAE  196 (243)
Q Consensus       152 ~l~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~  196 (243)
                      -+.+.-| +...+..++.....++++||+++|++|.|..+.++|.+
T Consensus       126 ~~A~~~Gr~~~~a~~~v~~~~~lta~EA~~~G~iD~ia~~~~~ll~  171 (172)
T cd07015         126 SLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLK  171 (172)
T ss_pred             HHHHHHCcCHHHHHHHHHhhcCcCHHHHHHcCCceeeeCCHHHHhh
Confidence            1222223 24567777888889999999999999999998777653

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>PRK10949 protease 4; Provisional

Probab=99.04  E-value=3.7e-09  Score=99.27  Aligned_cols=166  Identities=20%  Similarity=0.281  Sum_probs=101.8

Q ss_pred             eCCEEEEEEcCCCC---CCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046            7 HGDVFVLTLTGSSD---VDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL   83 (243)
Q Consensus         7 ~~~v~~i~ln~p~~---~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   83 (243)
                      .+.|++|.++.+=.   +..+.++   .+.+.+.|+++.+|++|| .||++-.    |.|......              
T Consensus       325 ~~~Iavi~~~G~I~~g~~~~g~~~---~~~~~~~l~~a~~D~~vk-aVvLrIn----SpGGs~~as--------------  382 (618)
T PRK10949        325 GGSIAVIFANGAIMDGEETPGNVG---GDTTAAQIRDARLDPKVK-AIVLRVN----SPGGSVTAS--------------  382 (618)
T ss_pred             CCeEEEEEEEEEEcCCCCcCCCcC---HHHHHHHHHHHHhCCCCc-EEEEEec----CCCCcHHHH--------------
Confidence            46788888863210   0112333   357888999999999999 7888653    233322211              


Q ss_pred             HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecc------------cccCCCC------
Q 041046           84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSE------------VDIGATL------  145 (243)
Q Consensus        84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe------------~~~Gl~~------  145 (243)
                         +.+.+.+.++....||+|+.+.|.|..||+.++++||.++|.+. +..+--.            -++|+..      
T Consensus       383 ---e~i~~~i~~~r~~gKPVvas~~~~aASggY~iA~aad~I~a~p~-t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~  458 (618)
T PRK10949        383 ---EVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVASPS-TLTGSIGIFGVINTVENSLDSIGVHTDGVSTS  458 (618)
T ss_pred             ---HHHHHHHHHHHhcCCcEEEEECCCCccHHHHHHHhcCEEEECCC-CceeeCcEEEEccCHHHHHHhcCCceeEEecc
Confidence               12344444555678999999999999999999999999999875 4333100            0122210      


Q ss_pred             -----------chhhHHH-----------HHH------HhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046          146 -----------PDYFTAL-----------FRA------KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA  197 (243)
Q Consensus       146 -----------p~~g~~~-----------l~~------~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~  197 (243)
                                 +.-.-..           +..      .+. .... +-+..|+.+++++|++.||||++..- ++..+.
T Consensus       459 ~~~~~~~~~~~s~e~~~~~q~~ld~~y~~F~~~Va~~R~~~-~~~v-~~ia~Grv~tg~~A~~~GLVD~lG~~-~~ai~~  535 (618)
T PRK10949        459 PLADVSITKALPPEFQQMMQLSIENGYKRFITLVADSRHKT-PEQI-DKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAK  535 (618)
T ss_pred             ccCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-HHHH-HHHhcCCcccHHHHHHcCCCccCCCH-HHHHHH
Confidence                       0000000           111      122 2222 23568999999999999999999864 554444


Q ss_pred             HHHH
Q 041046          198 SMRL  201 (243)
Q Consensus       198 a~~~  201 (243)
                      +.++
T Consensus       536 a~~~  539 (618)
T PRK10949        536 AAEL  539 (618)
T ss_pred             HHHH
Confidence            4443

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=98.98  E-value=1.9e-10  Score=99.36  Aligned_cols=187  Identities=14%  Similarity=0.062  Sum_probs=149.2

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHHHHH
Q 041046            9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYMVE   87 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~   87 (243)
                      ++..+.++ |   +.|..|.++..++..-++.+..+..+. ..++|+.. +.|++|.|..+.....     ......+.-
T Consensus        66 ~~~~~dmv-i---eav~edl~Lk~~l~~~le~v~~~~~i~-gsntSs~~~~~isa~ld~~e~vvg~-----h~fspa~~m  135 (380)
T KOG1683|consen   66 GFANADMV-I---EAVFEDLELKHELFKSLEKVEPPKCIR-GSNTSSLDINVISAGLDRPEMVVGM-----HFFSPAHWM  135 (380)
T ss_pred             ccccccee-c---cchhhhHHHHHHHHHHHHhhcCCccee-eeccccCChHHHhhccCchhhhccc-----cccCHHHHH
Confidence            56677777 6   689999999999999999999988888 78888877 9999999999876531     334455566


Q ss_pred             hHHHHHHHHhcCCCcEEEEECcccchhH--HHHHHhccEEEEecCC-cceeecccccCCCCchhhHHHHHHHhCCHHHHH
Q 041046           88 SFRPVVAAMMDLPMPTVAAVNGHAAAAG--FTLALSHDYVIMRRDK-GVLYMSEVDIGATLPDYFTALFRAKVGSATARR  164 (243)
Q Consensus        88 ~~~~~~~~l~~~~kp~Ia~v~G~a~G~G--~~la~~~D~~ia~~~~-~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~  164 (243)
                      .+++++.+.+.++.|+.+++||++--++  +.++.+|+|++...-. ...+..+...++..|.+-...+...+| ...+-
T Consensus       136 ~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvVg~c~gf~v~r~l~~y~~~~~~~l~e~g~~p~~iD~~~t~fG-f~~g~  214 (380)
T KOG1683|consen  136 QLLEIILALYTSKLTIATAINGGSPAGKLPVVVGNCCGFRVNRLLPPYTIGLNELLLEIGADPWLIDSLITKFG-FRVGE  214 (380)
T ss_pred             HHHHHHHhcCCCchHHHHHHhcccccCCccEEeccCCceEEEecccHHHHHHHHHHHHcCCCHHHHHHHHHhcC-ccccH
Confidence            7899999999999999999999999998  8899999999997321 334778888886578887777777777 55555


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCC-hHHHHHHHHHHHHHHh
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDS-EEQVAEASMRLAKQMA  206 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~l~~~a~~~a~~la  206 (243)
                      .-+-.+.-++..||.+-|+++.+.++ .+++.+....-.+.-.
T Consensus       215 ~~L~d~~gfdv~eal~~gl~~~~~~r~~eel~~~~~~g~kT~k  257 (380)
T KOG1683|consen  215 RALADGVGFDVAEALAVGLGDEIGPRIEEELLEKGRAGIKTGK  257 (380)
T ss_pred             HHHhhccCccHHHHHhhccchhccchhHHHHHHHHhhhhhccC
Confidence            55667889999999999999999996 5777777665444433

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.91  E-value=4.5e-08  Score=77.23  Aligned_cols=134  Identities=16%  Similarity=0.152  Sum_probs=87.6

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+.+++.+.|..++.++..+. ++.+.+.|      .++..                    ...++..+...++|++
T Consensus         9 I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG------G~v~~--------------------~~~i~~~i~~~~~~v~   62 (162)
T cd07013           9 VEDISANQFAAQLLFLGAVNPEKDIYLYINSPG------GDVFA--------------------GMAIYDTIKFIKADVV   62 (162)
T ss_pred             ECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC------CcHHH--------------------HHHHHHHHHhcCCCce
Confidence            677899999999999998866552 33344333      33322                    2445566677889999


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhC-CHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVG-SATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~  165 (243)
                      +.+.|.|.++|..++++||  .|++.++ +.+.+....-+. ..... ..               .+.+.-| ......+
T Consensus        63 ~~~~g~aaS~~~~i~~a~~~g~r~~~p~-a~~~ih~~~~~~-~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~  140 (162)
T cd07013          63 TIIDGLAASMGSVIAMAGAKGKRFILPN-AMMMIHQPWGGT-LGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHA  140 (162)
T ss_pred             EEEEeehhhHHHHHHHcCCCCcEEEecC-EEEEEccCcccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            9999999999999999999  5777777 666553332222 11110 11               1111222 1334445


Q ss_pred             HHhccCCCCHHHHHHcCchhhh
Q 041046          166 VLLRAKKIKGEEALRMGLVQAA  187 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      ++-.+.-++|+||+++||||++
T Consensus       141 ~~~~~~~~sa~eA~~~GliD~i  162 (162)
T cd07013         141 DLERDTWLSAREAVEYGFADTI  162 (162)
T ss_pred             HHcCCccccHHHHHHcCCCCcC
Confidence            5555666799999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>PRK11778 putative inner membrane peptidase; Provisional

Probab=98.88  E-value=3.5e-08  Score=85.73  Aligned_cols=164  Identities=20%  Similarity=0.187  Sum_probs=93.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      .+.|++|.|+.+=   .......+-+++...++.+..+   . .||++-.    |.|..+.....               
T Consensus        89 ~~~v~VI~~~G~I---~~~~~~~l~e~i~a~l~~A~~~---~-aVvLrid----SpGG~v~~s~~---------------  142 (330)
T PRK11778         89 KPRLFVLDFKGDI---DASEVESLREEITAILAVAKPG---D-EVLLRLE----SPGGVVHGYGL---------------  142 (330)
T ss_pred             CCeEEEEEEEEEE---CCCcchhhHHHHHHHHHhccCC---C-eEEEEEe----CCCCchhHHHH---------------
Confidence            3679999998651   1111223445566555555543   2 3444322    22332222110               


Q ss_pred             HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC----------
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT----------  144 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~----------  144 (243)
                        ....+.++....||+++.+.+.|..||+.++++||.+|+.+. +.++--.+-            +|+.          
T Consensus       143 --a~~~l~~lr~~~kpVva~v~~~AASggY~iAsaAD~I~A~P~-a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK  219 (330)
T PRK11778        143 --AASQLQRLRDAGIPLTVAVDKVAASGGYMMACVADKIIAAPF-AIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYK  219 (330)
T ss_pred             --HHHHHHHHHhcCCCEEEEECCchhhHHHHHHHhCCEEEECCC-CeEEeeeeeeeccCHHHHHHHCCCceEEEEecCcc
Confidence              111134556678999999999999999999999999999887 555521111            1110          


Q ss_pred             -----C---chhhHHH-----------HHHHh--CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHH
Q 041046          145 -----L---PDYFTAL-----------FRAKV--GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMR  200 (243)
Q Consensus       145 -----~---p~~g~~~-----------l~~~~--g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~  200 (243)
                           +   .+-+-..           +...+  +++....+-+.+|+.+++++|++.||||++... +++...+.+
T Consensus       220 ~a~~pf~~~see~Re~~q~~Ld~~y~~F~~~Va~~R~~l~~~~va~G~v~~g~~Al~~GLVD~Ig~~-dd~i~~~~~  295 (330)
T PRK11778        220 RTLTLFGENTEEGREKFREELEETHQLFKDFVQRYRPQLDIDKVATGEHWYGQQALELGLVDEIQTS-DDYLLELMK  295 (330)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHhCCCcCHHHHHHCCCCCcCCCH-HHHHHHHHh
Confidence                 0   0000001           11111  111111234568999999999999999999976 666554443

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=98.84  E-value=4.6e-07  Score=76.34  Aligned_cols=138  Identities=20%  Similarity=0.252  Sum_probs=94.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++-.+...+.++.+.+..-+  +|-+.-.++++. |.+.++              .-....+.+.+..+...++|+
T Consensus        77 G~~~~~g~rKa~R~~~lA~~~~lP--vV~lvDtpGa~~-g~~aE~--------------~G~~~~ia~~~~~~s~~~VP~  139 (256)
T PRK12319         77 GQPHPEGYRKALRLMKQAEKFGRP--VVTFINTAGAYP-GVGAEE--------------RGQGEAIARNLMEMSDLKVPI  139 (256)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CHhHHh--------------ccHHHHHHHHHHHHhCCCCCE
Confidence            368899999999999999876544  455544444442 332211              112345667777888999999


Q ss_pred             EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046          104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|-|.|.|||......||++++.++ +.++       +..|.+.+..+-+.-.....+.+.+    .+++.++++.|+
T Consensus       140 IsVI~G~~~gGgA~a~~~~D~v~m~~~-a~~~-------v~~pe~~a~il~~~~~~a~~aa~~~----~~~a~~l~~~g~  207 (256)
T PRK12319        140 IAIIIGEGGSGGALALAVADQVWMLEN-TMYA-------VLSPEGFASILWKDGSRATEAAELM----KITAGELLEMGV  207 (256)
T ss_pred             EEEEeCCcCcHHHHHhhcCCEEEEecC-ceEE-------EcCHHHHHHHHhcCcccHHHHHHHc----CCCHHHHHHCCC
Confidence            999999999999988889999999998 5554       2134444444433222122323333    779999999999


Q ss_pred             hhhhcCC
Q 041046          184 VQAAYDS  190 (243)
Q Consensus       184 v~~v~~~  190 (243)
                      ||.|++.
T Consensus       208 iD~ii~e  214 (256)
T PRK12319        208 VDKVIPE  214 (256)
T ss_pred             CcEecCC
Confidence            9999974

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.84  E-value=1.3e-07  Score=77.49  Aligned_cols=142  Identities=15%  Similarity=0.143  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+..++.+.|..++..+..+ ..+.+.+.|      .++..                    ...++..|..++.|++
T Consensus        44 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG------G~v~~--------------------g~~I~d~i~~~~~~v~   97 (207)
T PRK12553         44 VDDASANDVMAQLLVLESIDPDRDITLYINSPG------GSVTA--------------------GDAIYDTIQFIRPDVQ   97 (207)
T ss_pred             ECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC------CcHHH--------------------HHHHHHHHHhcCCCcE
Confidence            88999999999999999754323 134444433      33332                    2345666777888999


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeeccccc-CCCCchh-h---------------HHHHHHHhCC-HHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDI-GATLPDY-F---------------TALFRAKVGS-ATARR  164 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~-Gl~~p~~-g---------------~~~l~~~~g~-~~~a~  164 (243)
                      +.+.|.|.+.|..++++||  .|++.++ +.|.+-.... |...... -               ...+.++-|. .....
T Consensus        98 t~~~G~aaSaa~lI~~ag~~~~R~~~p~-s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~  176 (207)
T PRK12553         98 TVCTGQAASAGAVLLAAGTPGKRFALPN-ARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIR  176 (207)
T ss_pred             EEEEeehhhHHHHHHHcCCcCcEEECCC-chhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            9999999999999999999  5899888 6666554432 2101000 0               1123333331 34556


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCChHHH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQV  194 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l  194 (243)
                      +++-.+.-++|+||+++||||+|+++.++|
T Consensus       177 ~~~~~~~~lta~EA~e~GliD~I~~~~~dl  206 (207)
T PRK12553        177 KDTDRDKWLTAEEAKDYGLVDQIITSYRDL  206 (207)
T ss_pred             HHHhcCccccHHHHHHcCCccEEcCchhhc
Confidence            666678889999999999999999885554

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.83  E-value=4.6e-08  Score=79.81  Aligned_cols=137  Identities=15%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++.+.+...|..++.++..+ ..+.+.+.|      .++..                    ...++..|...+.|++
T Consensus        40 I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG------G~v~~--------------------g~~I~d~i~~~~~~v~   93 (200)
T PRK00277         40 VEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG------GSVTA--------------------GLAIYDTMQFIKPDVS   93 (200)
T ss_pred             ECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------CcHHH--------------------HHHHHHHHHhcCCCEE
Confidence            78899999999999988654333 134444433      33322                    2344556667788999


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchh-h----H-----------HHHHHHhC-CHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDY-F----T-----------ALFRAKVG-SATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~-g----~-----------~~l~~~~g-~~~~a~~  165 (243)
                      +.+.|.|.+.|..++++++  .|++.++ +.+.+....-|. .... .    +           ..+.++-| ......+
T Consensus        94 t~~~G~aaS~a~~I~~ag~~~~r~~~p~-s~imih~p~~~~-~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~~~~i~~  171 (200)
T PRK00277         94 TICIGQAASMGAFLLAAGAKGKRFALPN-SRIMIHQPLGGF-QGQATDIEIHAREILKLKKRLNEILAEHTGQPLEKIEK  171 (200)
T ss_pred             EEEEeEeccHHHHHHhcCCCCCEEEcCC-ceEEeccCcccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999998754  6777776 556554332221 1000 0    0           11222333 1344455


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ++-.+.-++|+||+++||+|+|+.+
T Consensus       172 ~~~~~~~lsa~EA~e~GliD~Ii~~  196 (200)
T PRK00277        172 DTDRDNFMSAEEAKEYGLIDEVLTK  196 (200)
T ss_pred             HhhCCccccHHHHHHcCCccEEeec
Confidence            5666778999999999999999976

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.80  E-value=4.5e-08  Score=85.31  Aligned_cols=164  Identities=20%  Similarity=0.236  Sum_probs=99.6

Q ss_pred             CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHh
Q 041046            9 DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVES   88 (243)
Q Consensus         9 ~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~   88 (243)
                      .|++|.++.+=.-..+....-..+.+.+.++.+..++.++ .|+|.=    =|.|...-..                 +.
T Consensus        60 ~Iavi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk-~vvL~i----nSPGG~v~as-----------------~~  117 (317)
T COG0616          60 VIAVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVK-AVVLRI----NSPGGSVVAS-----------------EL  117 (317)
T ss_pred             EEEEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCc-eEEEEE----ECcCCchhHH-----------------HH
Confidence            4788888754100011111234677888889999999999 444422    2223322211                 12


Q ss_pred             HHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhC----------
Q 041046           89 FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVG----------  158 (243)
Q Consensus        89 ~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g----------  158 (243)
                      +.+.++++..-. ||++.|.+.|..||+.++++||.+||++. +..|    .+|...-......+.++.|          
T Consensus       118 i~~~l~~l~~~~-PV~v~v~~~AASGGY~IA~aAd~I~a~p~-si~G----SIGVi~~~~~~~~l~~k~Gv~~~~~~ag~  191 (317)
T COG0616         118 IARALKRLRAKK-PVVVSVGGYAASGGYYIALAADKIVADPS-SITG----SIGVISGAPNFEELLEKLGVEKEVITAGE  191 (317)
T ss_pred             HHHHHHHHhhcC-CEEEEECCeecchhhhhhccCCEEEecCC-ceee----eceeEEecCCHHHHHHhcCCceeeeeccc
Confidence            444555555555 99999999999999999999999999887 6666    3443111111112222222          


Q ss_pred             ---------------------------------------CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHH
Q 041046          159 ---------------------------------------SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM  199 (243)
Q Consensus       159 ---------------------------------------~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~  199 (243)
                                                             .......-+.+|+.+++++|++.||||++... ++....+.
T Consensus       192 ~k~~~~~~~~~t~e~~~~~q~~~~e~y~~F~~~V~~~R~~~~~~~~~~a~g~v~~g~~A~~~gLVDelg~~-~~av~~~~  270 (317)
T COG0616         192 YKDILSPFRPLTEEEREILQKEIDETYDEFVDKVAEGRGLSDEAVDKLATGRVWTGQQALELGLVDELGGL-DDAVKDAA  270 (317)
T ss_pred             cccccCcccCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHhccceecHHHhhhcCCchhcCCH-HHHHHHHH
Confidence                                                   01111345678999999999999999999876 44444443


Q ss_pred             HH
Q 041046          200 RL  201 (243)
Q Consensus       200 ~~  201 (243)
                      +.
T Consensus       271 ~~  272 (317)
T COG0616         271 EL  272 (317)
T ss_pred             Hh
Confidence            33

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.79  E-value=2.7e-07  Score=75.04  Aligned_cols=144  Identities=12%  Similarity=0.029  Sum_probs=93.8

Q ss_pred             CCHHHHHHHHHHHHHHHh-CCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKA-EATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~-d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++...+...|..++. ++.-...+.+.+.      |.++..                    ...++..|...+.||+
T Consensus        32 I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSp------GG~v~a--------------------g~aI~d~i~~~~~~V~   85 (197)
T PRK14512         32 INKDLSELFQEKILLLEALDSKKPIFVYIDSE------GGDIDA--------------------GFAIFNMIRFVKPKVF   85 (197)
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEECC------CCCHHH--------------------HHHHHHHHHhCCCCEE
Confidence            888999999999988886 3322213444443      333332                    2445666777899999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhC-CHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVG-SATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g-~~~~a~~  165 (243)
                      +.+.|.|.+.|..++++||.  |++.++ +.+-+-...-++ ..... ..               .+.++-| ......+
T Consensus        86 t~v~G~AaSaaslIl~ag~~~~R~~~p~-s~imiHqP~~~~-~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~  163 (197)
T PRK14512         86 TIGVGLVASAAALIFLAAKKESRFSLPN-ARYLLHQPLSGF-KGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEK  163 (197)
T ss_pred             EEEEeeeHhHHHHHHhcCCcCceeECCC-CcEEEEcCcccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHH
Confidence            99999999999999999985  888888 555443332222 11111 00               1111222 1233445


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCChHHHHHH
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA  197 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~  197 (243)
                      ++-....++|+||+++||+|+|+++.+++.+.
T Consensus       164 ~~~~d~~lta~EA~~yGliD~I~~~~~~l~~~  195 (197)
T PRK14512        164 DTDRDFWLDSSSAVKYGLVFEVVETRLELEEF  195 (197)
T ss_pred             hhhcCcccCHHHHHHcCCccEeecCcHHhHhh
Confidence            55556679999999999999999886666543

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=98.75  E-value=2.2e-07  Score=73.97  Aligned_cols=142  Identities=16%  Similarity=0.141  Sum_probs=95.9

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .|.++.+       ++.+...++...+..+..++..+. .+.+.+.|+      ++..                    ..
T Consensus        11 ~i~i~g~-------I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG------~v~~--------------------~~   57 (171)
T cd07017          11 IIFLGGP-------IDDEVANLIIAQLLYLESEDPKKPIYLYINSPGG------SVTA--------------------GL   57 (171)
T ss_pred             EEEEcCE-------EcHHHHHHHHHHHHHHHccCCCCceEEEEECCCC------CHHH--------------------HH
Confidence            4556555       788999999999999998655441 344444333      3332                    23


Q ss_pred             HHHHHHhcCCCcEEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchh--h-------------HHHH
Q 041046           91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDY--F-------------TALF  153 (243)
Q Consensus        91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~--g-------------~~~l  153 (243)
                      .++..+...+.|+++.+.|.|.++|..+++++|  .|++.++ +.|.+-+...+..-+..  .             ...+
T Consensus        58 ~i~~~l~~~~~~v~t~~~g~aaS~~~~i~~~g~~~~r~~~~~-a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~  136 (171)
T cd07017          58 AIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPN-SRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEIL  136 (171)
T ss_pred             HHHHHHHhcCCCEEEEEEeEehhHHHHHHHcCCCCCEEEccc-hHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667899999999999999999999999  7999988 77777666555411100  0             0111


Q ss_pred             HHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhh
Q 041046          154 RAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAA  187 (243)
Q Consensus       154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v  187 (243)
                      .++-|. .....+++-.+.-++|+||+++||+|+|
T Consensus       137 ~~~tg~~~~~i~~~~~~~~~lta~EA~e~GiiD~V  171 (171)
T cd07017         137 AKHTGQPLEKIEKDTDRDRYMSAEEAKEYGLIDKI  171 (171)
T ss_pred             HHHhCCCHHHHHHHhhCCccccHHHHHHcCCCccC
Confidence            222231 2344556667788999999999999986

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=98.69  E-value=3e-06  Score=73.23  Aligned_cols=138  Identities=16%  Similarity=0.189  Sum_probs=94.6

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++.++...+.++.+++..-+  +|-+--.+++++ |.+-++.              -....+.+.+..+....+|+
T Consensus       133 G~~~p~g~rKa~Rlm~lA~~f~lP--IItlvDTpGA~~-G~~AE~~--------------G~~~aiar~l~~~a~~~VP~  195 (322)
T CHL00198        133 GMPSPGGYRKALRLMKHANKFGLP--ILTFIDTPGAWA-GVKAEKL--------------GQGEAIAVNLREMFSFEVPI  195 (322)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCc-CHHHHHH--------------hHHHHHHHHHHHHHcCCCCE
Confidence            368899999999999999976554  444444344443 3222211              11334566677778899999


Q ss_pred             EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046          104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|-|.|.|||......||++++.++ ++++       +.-|.+.+..+-+-   ..++.+. ...-+++|+++++.|+
T Consensus       196 IsVViGeggsGGAlal~~aD~V~m~e~-a~~s-------VisPEg~a~Il~~d---~~~a~~a-A~~~~ita~dL~~~gi  263 (322)
T CHL00198        196 ICTIIGEGGSGGALGIGIGDSIMMLEY-AVYT-------VATPEACAAILWKD---SKKSLDA-AEALKITSEDLKVLGI  263 (322)
T ss_pred             EEEEeCcccHHHHHhhhcCCeEEEeCC-eEEE-------ecCHHHHHHHHhcc---hhhHHHH-HHHcCCCHHHHHhCCC
Confidence            999999998888776667999999998 6554       21344445444332   2333232 2466899999999999


Q ss_pred             hhhhcCC
Q 041046          184 VQAAYDS  190 (243)
Q Consensus       184 v~~v~~~  190 (243)
                      ||+|++.
T Consensus       264 iD~ii~E  270 (322)
T CHL00198        264 IDEIIPE  270 (322)
T ss_pred             CeEeccC
Confidence            9999984

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=98.66  E-value=8.4e-06  Score=70.51  Aligned_cols=137  Identities=15%  Similarity=0.172  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++..+...+.++.+++-.-+  +|-+.-.++++. |.+-++              .-....+.+.+..+....+|+|
T Consensus       131 ~~~peg~rKa~R~m~lA~~f~lP--IVtlvDTpGa~~-G~~aE~--------------~G~~~aia~~l~~~a~~~VP~I  193 (319)
T PRK05724        131 MPRPEGYRKALRLMKMAEKFGLP--IITFIDTPGAYP-GIGAEE--------------RGQSEAIARNLREMARLKVPII  193 (319)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCCCC-CHHHHh--------------ccHHHHHHHHHHHHhCCCCCEE
Confidence            68899999999999999876444  555554444443 332221              1123456777888889999999


Q ss_pred             EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.|.|||..-...||++++.++ ++++       +..|.+.+..+-+.-   ..+.+..- ...++|.++++.|+|
T Consensus       194 sVIiGeg~sGGAla~~~aD~v~m~~~-A~~s-------visPEg~a~Il~~~~---~~a~~aae-~~~ita~~l~~~g~i  261 (319)
T PRK05724        194 CTVIGEGGSGGALAIGVGDRVLMLEY-STYS-------VISPEGCASILWKDA---SKAPEAAE-AMKITAQDLKELGII  261 (319)
T ss_pred             EEEeCCccHHHHHHHhccCeeeeecC-ceEe-------ecCHHHHHHHHhcCc---hhHHHHHH-HcCCCHHHHHHCCCc
Confidence            99999998888876667999999988 6554       323444444444332   22333332 566899999999999


Q ss_pred             hhhcCC
Q 041046          185 QAAYDS  190 (243)
Q Consensus       185 ~~v~~~  190 (243)
                      |+|++.
T Consensus       262 D~II~E  267 (319)
T PRK05724        262 DEIIPE  267 (319)
T ss_pred             eEeccC
Confidence            999984

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=98.60  E-value=1.2e-05  Score=69.54  Aligned_cols=138  Identities=17%  Similarity=0.176  Sum_probs=92.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++..+...+.++.+++-.-+  +|-+--.+++++ |.+.++.              -....+.+.+..+....+|+
T Consensus       130 G~~~p~g~rKa~R~m~lA~~f~iP--vVtlvDTpGa~~-g~~aE~~--------------G~~~aia~~l~a~s~~~VP~  192 (316)
T TIGR00513       130 GMPAPEGYRKALRLMKMAERFKMP--IITFIDTPGAYP-GIGAEER--------------GQSEAIARNLREMARLGVPV  192 (316)
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCCCC-CHHHHHH--------------HHHHHHHHHHHHHHcCCCCE
Confidence            368899999999999999876544  444444444333 3222211              11344667777788999999


Q ss_pred             EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046          104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|-|.|.|||..-...||++++.++ ++++       +..|.+.+..+-+.-.....+.+    -..++|.++++.|+
T Consensus       193 IsVViGeggsGGAla~~~aD~v~m~~~-a~~s-------VisPEg~a~Il~kd~~~a~~aae----~~~~ta~~l~~~G~  260 (316)
T TIGR00513       193 ICTVIGEGGSGGALAIGVGDKVNMLEY-STYS-------VISPEGCAAILWKDASKAPKAAE----AMKITAPDLKELGL  260 (316)
T ss_pred             EEEEecccccHHHhhhccCCEEEEecC-ceEE-------ecCHHHHHHHhccchhhHHHHHH----HccCCHHHHHHCCC
Confidence            999999998888766667999999998 5554       31344444444332211222222    36778999999999


Q ss_pred             hhhhcCC
Q 041046          184 VQAAYDS  190 (243)
Q Consensus       184 v~~v~~~  190 (243)
                      ||.|++.
T Consensus       261 iD~II~e  267 (316)
T TIGR00513       261 IDSIIPE  267 (316)
T ss_pred             CeEeccC
Confidence            9999984

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.60  E-value=3.4e-07  Score=73.55  Aligned_cols=144  Identities=17%  Similarity=0.234  Sum_probs=95.5

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .|.|+.|       ++.++...+.+.|..+++.+..+ ..+.+.+      .|.++..                    ..
T Consensus        18 ~i~l~g~-------I~~~~~~~~~~~L~~l~~~~~~~~i~i~INS------pGG~v~~--------------------g~   64 (182)
T PF00574_consen   18 IIFLNGP-------IDEESANRLISQLLYLENEDKNKPINIYINS------PGGDVDA--------------------GL   64 (182)
T ss_dssp             EEEEESS-------BSHHHHHHHHHHHHHHHHHTSSSEEEEEEEE------CEBCHHH--------------------HH
T ss_pred             EEEECCc-------cCHHHHHHHHHHHHHHhccCCCceEEEEEcC------CCCccHH--------------------HH
Confidence            4666666       89999999999988885433222 1344444      4444432                    34


Q ss_pred             HHHHHHhcCCCcEEEEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-H---------------HH
Q 041046           91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-T---------------AL  152 (243)
Q Consensus        91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~  152 (243)
                      .++..|..++.|+++.+.|.|.+.|..++++||.  |++.++ +.|.+-++..+. ..... .               ..
T Consensus        65 ~i~~~i~~~~~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~-s~~m~H~p~~~~-~g~~~~l~~~~~~l~~~~~~~~~~  142 (182)
T PF00574_consen   65 AIYDAIRSSKAPVTTVVLGLAASAATLIFLAGDKGKRYASPN-SRFMIHQPSTGS-GGNASELREQAKELEKLNERIANI  142 (182)
T ss_dssp             HHHHHHHHSSSEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT--EEEES-CEEEE-EEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeCccccceehhhhcCCcCceeeeec-CEEEeecceeec-ccccchhHHHHHHHHHHHHHHHHH
Confidence            5666777889999999999999999999999999  899998 788877776555 12110 1               11


Q ss_pred             HHHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          153 FRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +.++.|. .....+++-...-++|+||+++||+|+|+.+
T Consensus       143 ~~~~tg~~~~~i~~~~~~~~~l~a~EA~~~GiiD~I~~~  181 (182)
T PF00574_consen  143 YAERTGLSKEEIEELMDRDTWLSAEEALEYGIIDEIIES  181 (182)
T ss_dssp             HHHHHTS-HHHHHHHCSSTEEEEHHHHHHHTSSSEEESS
T ss_pred             HHHHhCCcHHHHHHHHhCCccccHHHHHHcCCCCEeccC
Confidence            1112221 2333444444555899999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=98.55  E-value=2e-05  Score=69.99  Aligned_cols=137  Identities=19%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++.++...+.++.++...-+  +|-+.-.++++ .|.+.++              .-....+.+.+..+....+|+|
T Consensus       201 ~~~peGyRKAlR~mklAekf~lP--IVtLVDTpGA~-pG~~AEe--------------~Gqa~aIAr~l~ams~l~VPiI  263 (431)
T PLN03230        201 MPQPNGYRKALRFMRHAEKFGFP--ILTFVDTPGAY-AGIKAEE--------------LGQGEAIAFNLREMFGLRVPII  263 (431)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcC-CCHHHHH--------------HhHHHHHHHHHHHHhcCCCCEE
Confidence            68899999999999999876544  44444433333 2222221              1123446677778889999999


Q ss_pred             EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.+.+||.....+||+++|.++ ++++       +.-|.+.+..+-+--.....+.+    ...++|+++++.|+|
T Consensus       264 SVViGeGgSGGAlalg~aD~VlMle~-A~ys-------VisPEgaAsILwkd~~~A~eAAe----alkitA~dL~~~GiI  331 (431)
T PLN03230        264 ATVIGEGGSGGALAIGCGNRMLMMEN-AVYY-------VASPEACAAILWKSAAAAPKAAE----ALRITAAELVKLGVV  331 (431)
T ss_pred             EEEeCCCCcHHHHHhhcCCEEEEecC-CEEE-------ecCHHHHHHHHhccccchHHHHH----HcCCCHHHHHhCCCC
Confidence            99999997777666668999999998 5554       31244444444332221222323    448999999999999


Q ss_pred             hhhcCC
Q 041046          185 QAAYDS  190 (243)
Q Consensus       185 ~~v~~~  190 (243)
                      |.|++.
T Consensus       332 D~II~E  337 (431)
T PLN03230        332 DEIVPE  337 (431)
T ss_pred             eEeccC
Confidence            999974

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=98.52  E-value=2.4e-05  Score=73.72  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      +.+++.++...+.++.++...-+  +|-+--.++++. |...+..              -....+.+.+..+....+|+|
T Consensus       222 ~~~peGyRKAlRlmkLAekfgLP--IVtLVDTpGA~p-G~~AEe~--------------Gq~~aIArnl~amasl~VP~I  284 (762)
T PLN03229        222 MPTPHGYRKALRMMYYADHHGFP--IVTFIDTPGAYA-DLKSEEL--------------GQGEAIAHNLRTMFGLKVPIV  284 (762)
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCC--EEEEEECCCcCC-CchhHHH--------------hHHHHHHHHHHHHhCCCCCEE
Confidence            67888899999999999876554  444443333333 3222221              113446677778889999999


Q ss_pred             EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.|.|||......||+++|.++ ++++       +.-|.+.+..+-+--.   ++.+ +...-.++|++.++.|+|
T Consensus       285 SVViGeggSGGAlA~g~aD~VlMle~-A~~s-------VisPEgaAsILwkd~~---~A~e-AAe~lkiTa~dL~~lGii  352 (762)
T PLN03229        285 SIVIGEGGSGGALAIGCANKLLMLEN-AVFY-------VASPEACAAILWKSAK---AAPK-AAEKLRITAQELCRLQIA  352 (762)
T ss_pred             EEEeCCcchHHHHHhhcCCEEEEecC-CeEE-------ecCHHHHHHHHhcCcc---cHHH-HHHHcCCCHHHHHhCCCC
Confidence            99999999998888888999999998 5443       2134444544433322   2222 224668999999999999


Q ss_pred             hhhcCC
Q 041046          185 QAAYDS  190 (243)
Q Consensus       185 ~~v~~~  190 (243)
                      |+|+|.
T Consensus       353 D~IIpE  358 (762)
T PLN03229        353 DGIIPE  358 (762)
T ss_pred             eeeccC
Confidence            999984

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=98.44  E-value=7.1e-06  Score=66.83  Aligned_cols=138  Identities=10%  Similarity=0.012  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++.+++...|-.++.++..+ ..+.+.+.|      .++..                    ...++..+...+.|+.
T Consensus        39 i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG------G~v~~--------------------g~aIyd~m~~~~~~V~   92 (200)
T CHL00028         39 VDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG------GSVIS--------------------GLAIYDTMQFVKPDVH   92 (200)
T ss_pred             ecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC------cchhh--------------------HHHHHHHHHhcCCCEE
Confidence            89999999999999998543323 234454444      33221                    2446667778899999


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-H---------------HHHHHHhCC-HHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-T---------------ALFRAKVGS-ATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~---------------~~l~~~~g~-~~~a~~  165 (243)
                      ..+-|.|.+.|.-+++++|  .|++.++ +.|-+-....|....... .               ..+.++-|. .....+
T Consensus        93 Tv~~G~AaS~aslIl~aG~kg~R~~~p~-s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~Tg~~~e~i~~  171 (200)
T CHL00028         93 TICLGLAASMASFILAGGEITKRLAFPH-ARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISE  171 (200)
T ss_pred             EEEEEehHHHHHHHHhCCCCCCEEecCC-CeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999999  6999988 677665554441111110 0               011112221 223344


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ++-...-++|+||+++||||+|+.+
T Consensus       172 ~~~r~~~lta~EA~eyGliD~I~~~  196 (200)
T CHL00028        172 DMERDVFMSATEAKAYGIVDLVAVN  196 (200)
T ss_pred             HhhcCccCCHHHHHHcCCCcEEeec
Confidence            4555566999999999999999976

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=98.44  E-value=7.9e-06  Score=66.19  Aligned_cols=137  Identities=18%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+..++...|..++.++..+- .+.+.+.      |.++..                    ...++..+...+.|+.
T Consensus        35 I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSp------GG~v~~--------------------g~~I~d~l~~~~~~v~   88 (191)
T TIGR00493        35 VNDSVANLIVAQLLFLEAEDPEKDIYLYINSP------GGSITA--------------------GLAIYDTMQFIKPDVS   88 (191)
T ss_pred             EChHHHHHHHHHHHHhhccCCCCCEEEEEECC------CCCHHH--------------------HHHHHHHHHhcCCCEE
Confidence            788888999999999886554331 2333333      344332                    2334445666677787


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCC--Cchhh--H-----------HHHHHHhC-CHHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGAT--LPDYF--T-----------ALFRAKVG-SATARRDV  166 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g-~~~~a~~l  166 (243)
                      ..+.|.|.+.|.-+++++|  .|++.++ +.|.+-+..-|..  ..+.-  +           ..+.++-| ......++
T Consensus        89 t~~~G~AaSaaslI~~aG~~~~r~~~p~-s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~  167 (191)
T TIGR00493        89 TICIGQAASMGAFLLSAGAKGKRFSLPN-SRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKD  167 (191)
T ss_pred             EEEEEeeccHHHHHHhcCCCCcEEecCC-ceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            7788999999998888765  6999888 7777655432320  11110  0           11223333 13445566


Q ss_pred             HhccCCCCHHHHHHcCchhhhcC
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYD  189 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~  189 (243)
                      +-.+..++|+||+++||+|+|+.
T Consensus       168 ~~~~~~lta~EA~~~GliD~ii~  190 (191)
T TIGR00493       168 TERDFFMSAEEAKEYGLIDSVLT  190 (191)
T ss_pred             hhCCccCcHHHHHHcCCccEEec
Confidence            66677899999999999999874

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.1e-05  Score=70.12  Aligned_cols=158  Identities=19%  Similarity=0.303  Sum_probs=112.8

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      ++.|+++.++..       +++.+.+.+.+.++.++++..-. +|+.-..++.                         ..
T Consensus        25 ~~~v~vi~i~g~-------I~~~s~~~l~r~l~~A~~~~a~~-vvl~ldTPGG-------------------------l~   71 (436)
T COG1030          25 EKKVYVIEIDGA-------IDPASADYLQRALQSAEEENAAA-VVLELDTPGG-------------------------LL   71 (436)
T ss_pred             CCeEEEEEecCc-------cCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCc-------------------------hH
Confidence            457889999866       99999999999999999876432 3333222211                         12


Q ss_pred             HhHHHHHHHHhcCCCcEEEEEC---cccchhHHHHHHhccEEEEecCCcceeecccccCC--CCchhh-HH-------HH
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVN---GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGA--TLPDYF-TA-------LF  153 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~---G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl--~~p~~g-~~-------~l  153 (243)
                      +.+.++++++.+.|.|+++.+.   ++|..+|..++++||+.+|.+. +.++-...-.+-  ..+... ..       -+
T Consensus        72 ~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~m~~hiaaMAPg-T~iGaa~Pi~~~g~~~~~~~~~n~~~ay~~~~  150 (436)
T COG1030          72 DSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYILMATHIAAMAPG-TNIGAATPIAGGGTSAKEANTTNAAVAYIRSL  150 (436)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHHHhcChhhhCCC-CcccccceecCCCCCccchhhHHHHHHHHHHH
Confidence            3478899999999999888874   4799999999999999999987 667643332221  011111 11       12


Q ss_pred             HHHhC-CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHH
Q 041046          154 RAKVG-SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS  198 (243)
Q Consensus       154 ~~~~g-~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a  198 (243)
                      .+.-| +...|.+++.....++++||++.|++|-+..+..|+....
T Consensus       151 A~~~gRN~~~ae~~v~~~~~l~a~eA~~~~vid~iA~~~~ell~~~  196 (436)
T COG1030         151 AEERGRNPTWAERFVTENLSLTAEEALRQGVIDLIARDLNELLKKL  196 (436)
T ss_pred             HHHcCCChHHHHHHhhhccCCChhHHHhcCccccccCCHHHHHHHc
Confidence            22222 3667888999999999999999999999998866555443

>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification

Probab=98.29  E-value=2.5e-07  Score=72.43  Aligned_cols=103  Identities=18%  Similarity=0.230  Sum_probs=61.7

Q ss_pred             hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc------------cCCC-------------Cch----
Q 041046           97 MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD------------IGAT-------------LPD----  147 (243)
Q Consensus        97 ~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~------------~Gl~-------------~p~----  147 (243)
                      ....||++|.+.|.+..+++.++.+||-+++.+. +.++...+.            +|+.             +|.    
T Consensus         3 ~~~~KpV~a~~~~~~~S~~Y~lAs~ad~I~~~p~-s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~~s   81 (154)
T PF01343_consen    3 KASGKPVVAYAEGYAASGAYYLASAADEIYANPS-SSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDPMS   81 (154)
T ss_dssp             HHTT--EEEEEEEEEETHHHHHHTTSSEEEE-TT--EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS--
T ss_pred             cccCCeEEEEECCcchhHHHHHHHcCCEEEecCC-CEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCCCC
Confidence            4679999999999999999999999999999876 555532111            1110             010    


Q ss_pred             -hhHHHHHHH-----------h----CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHH
Q 041046          148 -YFTALFRAK-----------V----GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRL  201 (243)
Q Consensus       148 -~g~~~l~~~-----------~----g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~  201 (243)
                       -.-..+.+.           +    |......+-+..|..+++++|++.||||++... +++.+.+.+.
T Consensus        82 ~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~-~~~~~~l~~~  150 (154)
T PF01343_consen   82 EEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTF-DEAIARLAKL  150 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCH-HHHHHHHHHH
Confidence             011111111           1    101111233568899999999999999999865 6665555443

; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=98.21  E-value=7.8e-05  Score=60.53  Aligned_cols=137  Identities=15%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.+...++...|..++.++..+ ..+.+.+.|      .++..                    ...++..+...+.||.
T Consensus        34 i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG------G~v~~--------------------g~aIyd~m~~~~~~V~   87 (196)
T PRK12551         34 VTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG------GSVYD--------------------GLGIFDTMQHVKPDVH   87 (196)
T ss_pred             ecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC------cchhh--------------------HHHHHHHHHhcCCCEE
Confidence            88999999999999998543222 134444443      33322                    2345566777888999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HH---------------HHHHHhCC-HHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TA---------------LFRAKVGS-ATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~l~~~~g~-~~~a~~  165 (243)
                      ..+-|.|.+.|.-+++++|.  |++.++ +.+-+-...-|. ..... ..               .+.++-|. .....+
T Consensus        88 t~~~G~AaS~AslIl~aG~~~~R~~~p~-a~iMIHqP~~~~-~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~  165 (196)
T PRK12551         88 TVCVGLAASMGAFLLCAGAKGKRSSLQH-SRIMIHQPLGGA-RGQASDIRIQADEILFLKERLNTELSERTGQPLERIQE  165 (196)
T ss_pred             EEEEEEehhHHHHHHhCCCCCceecCCC-CEEEEecCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999985  888887 666554443222 11110 10               11122231 223344


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ++-...-++|+||+++||+|+|+++
T Consensus       166 ~~~rd~~msa~EA~eyGliD~I~~~  190 (196)
T PRK12551        166 DTDRDFFMSPSEAVEYGLIDLVIDK  190 (196)
T ss_pred             HhhcCcCCCHHHHHHcCCCcEEecc
Confidence            4445566999999999999999976

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.20  E-value=4.9e-05  Score=62.69  Aligned_cols=137  Identities=11%  Similarity=0.009  Sum_probs=87.9

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+.+++...|..++..+.-+ ..+.+.+.|+      ++..                    ...++..+...+.||.
T Consensus        63 Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGG------sv~a--------------------GlaIyd~m~~~~~~V~  116 (221)
T PRK14514         63 IDDYTANTIQAQLLYLDSVDPGKDISIYINSPGG------SVYA--------------------GLGIYDTMQFISSDVA  116 (221)
T ss_pred             EcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCc------chhh--------------------HHHHHHHHHhcCCCEE
Confidence            78888899998887777432111 1345544443      2221                    2345567778899999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-H----HH-----------HHHHhCC-HHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-T----AL-----------FRAKVGS-ATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~~-----------l~~~~g~-~~~a~~  165 (243)
                      ..+-|.|.+.|.-+++++|.  |++.++ +.+-+-...-|. ..... .    ..           +.+.-|. .....+
T Consensus       117 tv~~G~AAS~AslIl~aG~~gkR~~~pn-a~iMiHqP~~~~-~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~~  194 (221)
T PRK14514        117 TICTGMAASMASVLLVAGTKGKRSALPH-SRVMIHQPLGGA-QGQASDIEITAREIQKLKKELYTIIADHSGTPFDKVWA  194 (221)
T ss_pred             EEEEEEehhHHHHHHhcCCCCceeeCCC-CEEEeccCCccc-CCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            99999999999999999996  889888 666554443332 11111 0    01           1112231 223344


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      .+-...-++|+||+++||+|+|+.+
T Consensus       195 ~~~rd~wmtA~EA~eyGliD~Vi~~  219 (221)
T PRK14514        195 DSDRDYWMTAQEAKEYGMIDEVLIK  219 (221)
T ss_pred             HhhcCccCCHHHHHHcCCccEEeec
Confidence            4555566999999999999999864

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.19  E-value=2.4e-05  Score=73.68  Aligned_cols=84  Identities=18%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECc
Q 041046           30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG  109 (243)
Q Consensus        30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G  109 (243)
                      .+.++.+.|+++.+|+.|+ .||+.-..   +.|..+..+.                 .+.+.+..+....|||||..++
T Consensus        77 ~l~~i~~~i~~A~~D~~Ik-gIvL~i~~---~~g~~~~~~~-----------------ei~~ai~~fk~sgKpVvA~~~~  135 (584)
T TIGR00705        77 SLFDIVNAIRQAADDRRIE-GLVFDLSN---FSGWDSPHLV-----------------EIGSALSEFKDSGKPVYAYGTN  135 (584)
T ss_pred             CHHHHHHHHHHHhcCCCce-EEEEEccC---CCCCCHHHHH-----------------HHHHHHHHHHhcCCeEEEEEcc
Confidence            5789999999999999999 78887542   1233333222                 2344444555679999998877


Q ss_pred             ccchhHHHHHHhccEEEEecCCcceee
Q 041046          110 HAAAAGFTLALSHDYVIMRRDKGVLYM  136 (243)
Q Consensus       110 ~a~G~G~~la~~~D~~ia~~~~~~f~~  136 (243)
                      .+ -+|+.++.+||-+++.+. +.+++
T Consensus       136 ~~-s~~YylAs~AD~I~~~p~-G~v~~  160 (584)
T TIGR00705       136 YS-QGQYYLASFADEIILNPM-GSVDL  160 (584)
T ss_pred             cc-chhhhhhhhCCEEEECCC-ceEEe
Confidence            65 678999999999999887 55543

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=98.19  E-value=0.0004  Score=59.13  Aligned_cols=140  Identities=17%  Similarity=0.192  Sum_probs=84.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHh----CCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhc
Q 041046           23 EHRFGPSAIDSILSAIAKAKA----EATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMD   98 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~----d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   98 (243)
                      .-++....-+.+..+++.+.+    ...+- +|++...|+     .-+.+-..         ....+.+ +...+..+..
T Consensus        72 GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSgG-----aRlqEg~~---------~L~~~a~-i~~~~~~ls~  135 (274)
T TIGR03133        72 GGSVGEVHGAKIVGALRLAIEDNRKGQPTA-VVLLLDTGG-----VRLQEANA---------GLIAIAE-IMRAILDARA  135 (274)
T ss_pred             CcCCCHHHHHHHHHHHHHHHhhhhccCCCC-EEEEEcCCC-----cChhhhHH---------HHHHHHH-HHHHHHHHhC
Confidence            457888888999999999986    11223 455544333     33332111         1111111 1222233344


Q ss_pred             CCCcEEEEECcc--cchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH--HHHHHHHhccCCCC
Q 041046           99 LPMPTVAAVNGH--AAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA--TARRDVLLRAKKIK  174 (243)
Q Consensus        99 ~~kp~Ia~v~G~--a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~--~~a~~l~l~g~~~~  174 (243)
                      . .|+|+++.|+  |.||+..++.+||++|++++ ++++       +.    |...+....| .  -...+--+..+.+.
T Consensus       136 ~-vP~Isvv~Gp~gc~GG~a~~a~l~D~vim~~~-a~i~-------~a----GP~VIe~~~G-~e~~~~~d~~l~~~~lG  201 (274)
T TIGR03133       136 A-VPVIGVIGGRVGCFGGMGIAAGLCSYLIMTEE-GRLG-------LS----GPEVIEQEAG-VEEFDSRDRALVWRTTG  201 (274)
T ss_pred             C-CCEEEEEeCCCCcchHHHHHHhcCCEEEEeCC-cEEe-------cc----CHHHHHHhcC-CCccCHHHhcccccccc
Confidence            4 9999999999  89999999999999999987 6554       31    1122222233 1  11223333445566


Q ss_pred             HHHHHHcCchhhhcCChH
Q 041046          175 GEEALRMGLVQAAYDSEE  192 (243)
Q Consensus       175 a~eA~~~Glv~~v~~~~~  192 (243)
                      +......|++|.++++..
T Consensus       202 G~~~~~sG~~D~~v~dd~  219 (274)
T TIGR03133       202 GKHRFLSGDADVLVEDDV  219 (274)
T ss_pred             hHhHhhcccceEEeCCHH
Confidence            667888999999999733

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.19  E-value=5.1e-05  Score=63.79  Aligned_cols=96  Identities=23%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      +-++.+..+++.++++...++..+  .+++...      |+++..                    -.++.+.+.+.+.++
T Consensus        70 ~~I~i~dse~v~raI~~~~~~~~I--dLii~Tp------GG~v~A--------------------A~~I~~~l~~~~~~v  121 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREAPKDKPI--DLIIHTP------GGLVDA--------------------AEQIARALREHPAKV  121 (285)
T ss_pred             eeEcHhhHHHHHHHHHhcCCCCce--EEEEECC------CCcHHH--------------------HHHHHHHHHhCCCCE
Confidence            458888999999999998877654  4555433      333322                    244566777899999


Q ss_pred             EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh
Q 041046          104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF  149 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g  149 (243)
                      .+.|+..|..+|..++++||-+++.+. +.+|--+.++|- .|..+
T Consensus       122 ~v~VP~~A~SAGTlIALaADeIvM~p~-a~LGpiDPqi~~-~pA~s  165 (285)
T PF01972_consen  122 TVIVPHYAMSAGTLIALAADEIVMGPG-AVLGPIDPQIGQ-YPAAS  165 (285)
T ss_pred             EEEECcccccHHHHHHHhCCeEEECCC-CccCCCCccccC-CChHH
Confidence            999999999999999999999999988 889999999987 67654

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=98.14  E-value=0.00047  Score=59.32  Aligned_cols=165  Identities=14%  Similarity=0.172  Sum_probs=102.0

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      +|.-..|.-|.+. ...-+++....+.+.++++.+.+..- - +|.+...|+     +.+.+-.         .....+ 
T Consensus       119 ~G~~V~v~a~D~~-f~gGS~g~~~~eKi~r~~e~A~~~~l-P-lV~l~dsgG-----armqEgi---------~sL~~~-  180 (292)
T PRK05654        119 EGMPVVLAVMDFS-FMGGSMGSVVGEKIVRAVERAIEEKC-P-LVIFSASGG-----ARMQEGL---------LSLMQM-  180 (292)
T ss_pred             CCEEEEEEEEecc-cccCCccHHHHHHHHHHHHHHHHcCC-C-EEEEEcCCC-----cchhhhh---------hHHHhH-
Confidence            3433334444442 13468999999999999999998754 4 566665443     2222200         001111 


Q ss_pred             HhHHHHHHHHhcCCCcEEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHH
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD  165 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~  165 (243)
                      ......+.++.....|.|+++.|+|.||+. .+++.+|++|+.++ +.+++.       -|    ..+...++ ...   
T Consensus       181 ak~~~a~~~~~~a~vP~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gp----rvie~~~~-e~l---  244 (292)
T PRK05654        181 AKTSAALKRLSEAGLPYISVLTDPTTGGVSASFAMLGDIIIAEPK-ALIGFA-------GP----RVIEQTVR-EKL---  244 (292)
T ss_pred             HHHHHHHHHHHcCCCCEEEEEeCCCchHHHHHHHHcCCEEEEecC-cEEEec-------CH----HHHHhhhh-hhh---
Confidence            122334444566789999999999999965 56778999999776 555431       12    12222222 111   


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                         .-+-=+++-+.+.|+||.|+++ .++.+...++.+.+...+
T Consensus       245 ---pe~~~~ae~~~~~G~vD~Vv~~-~e~r~~l~~~L~~~~~~~  284 (292)
T PRK05654        245 ---PEGFQRAEFLLEHGAIDMIVHR-RELRDTLASLLALHTKQP  284 (292)
T ss_pred             ---hhhhcCHHHHHhCCCCcEEECH-HHHHHHHHHHHHHHhcCC
Confidence               1112256777899999999998 788888888888776554

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=98.12  E-value=0.00046  Score=57.65  Aligned_cols=141  Identities=14%  Similarity=0.139  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHHHH-HhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHh---cCC
Q 041046           25 RFGPSAIDSILSAIAKA-KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM---DLP  100 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~-~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~  100 (243)
                      .++.+-.....+.+..+ +.+..+- +|.+--.++ |-.|..-+              ..-....+.+++..+.   ..+
T Consensus        44 ~~g~~~~~k~A~~v~~~~d~~f~~P-Iv~lvDtpG-~~~g~~aE--------------~~G~~~a~A~l~~a~a~a~~~~  107 (238)
T TIGR03134        44 EVGLDEALALAQAVLDVIEADDKRP-IVVLVDTPS-QAYGRREE--------------LLGINQALAHLAKALALARLAG  107 (238)
T ss_pred             cCChHHHHHHHHHHHHHHHhcCCCC-EEEEEeCCC-CCCCHHHH--------------HHHHHHHHHHHHHHHHHhhcCC
Confidence            68888888888888885 4456666 566654433 22222222              1222333444444444   556


Q ss_pred             CcEEEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhc--cCCCCHHH
Q 041046          101 MPTVAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR--AKKIKGEE  177 (243)
Q Consensus       101 kp~Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~--g~~~~a~e  177 (243)
                      .|+|++|-|.++|||+. +.+.+|.++|-++ +.+       +. ++.-+...+..+=  ...+.++.-.  -...++..
T Consensus       108 vP~IsvI~g~a~ggg~lamg~~ad~v~Alp~-A~i-------~v-m~~e~aa~I~~~~--~~~~~e~a~~~~~~a~~~~~  176 (238)
T TIGR03134       108 HPVIGLIYGKAISGAFLAHGLQADRIIALPG-AMV-------HV-MDLESMARVTKRS--VEELEALAKSSPVFAPGIEN  176 (238)
T ss_pred             CCEEEEEeCCccHHHHHHHccCcCeEEEcCC-cEE-------Ee-cCHHHHHHHHccC--HhHHHHHHHhhhhhccCHHH
Confidence            99999999999999875 4445888888877 544       44 4444444333321  1222333322  23467888


Q ss_pred             HHHcCchhhhcCChH
Q 041046          178 ALRMGLVQAAYDSEE  192 (243)
Q Consensus       178 A~~~Glv~~v~~~~~  192 (243)
                      +.+.|+||.|++..+
T Consensus       177 ~~~~G~vd~vi~~~~  191 (238)
T TIGR03134       177 FVKLGGVHALLDVAD  191 (238)
T ss_pred             HHhCCCccEEeCCCC
Confidence            999999999998633

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=98.10  E-value=0.00058  Score=58.82  Aligned_cols=144  Identities=19%  Similarity=0.232  Sum_probs=82.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCC----CCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHh
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEA----TPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMM   97 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~----~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   97 (243)
                      ..-++.......+..+++.+.++.    -+- +|++...|+     .-+.+-..         ....+.+ +...+..+.
T Consensus        80 ~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~P-vV~l~dSGG-----aRlqEg~~---------~L~~~a~-i~~~~~~ls  143 (301)
T PRK07189         80 MGGSVGEVHGAKLAGALELAAEDNRNGIPTA-VLLLFETGG-----VRLQEANA---------GLAAIAE-IMRAIVDLR  143 (301)
T ss_pred             cCcCcCHHHHHHHHHHHHHHHHhCCCCCCCC-EEEEecCCC-----cCccchHH---------HHHHHHH-HHHHHHHHh
Confidence            345888999999999999998765    133 555544333     23322110         0111111 222223334


Q ss_pred             cCCCcEEEEECcc--cchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC-HHHHHHHHhccCCCC
Q 041046           98 DLPMPTVAAVNGH--AAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS-ATARRDVLLRAKKIK  174 (243)
Q Consensus        98 ~~~kp~Ia~v~G~--a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~~~a~~l~l~g~~~~  174 (243)
                      .. .|+|+++.|+  |.||+...+.+||++|++++ +.++       +.-|.    .+....|. .-...+.-+..+.+-
T Consensus       144 ~~-VP~I~vv~G~~gc~GG~a~~a~l~D~iIm~~~-a~ig-------laGP~----VIe~~~G~e~~d~~d~~~vw~~lG  210 (301)
T PRK07189        144 AA-VPVIGLIGGRVGCFGGMGIAAALCSYLIVSEE-GRLG-------LSGPE----VIEQEAGVEEFDSRDRALVWRTTG  210 (301)
T ss_pred             CC-CCEEEEEcCCCCCcHHHHHHHhcCCEEEEECC-cEEe-------ccCHH----HHHHhcCCcccCHHHhcccccccC
Confidence            44 9999999999  99999999999999999987 6544       31121    11111220 011122122122222


Q ss_pred             HHHHHHcCchhhhcCChHHH
Q 041046          175 GEEALRMGLVQAAYDSEEQV  194 (243)
Q Consensus       175 a~eA~~~Glv~~v~~~~~~l  194 (243)
                      +......|.+|.++++..+.
T Consensus       211 G~h~~~sG~~D~~v~dd~~a  230 (301)
T PRK07189        211 GKHRYLSGLADALVDDDVAA  230 (301)
T ss_pred             cceeeecccceEEeCCHHHH
Confidence            33455689999999984443

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=98.06  E-value=0.00066  Score=58.22  Aligned_cols=148  Identities=15%  Similarity=0.186  Sum_probs=95.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-+++....+.+.++++.+.+..- - +|.+...|+.     -+.+-.         .....+ ......+.++.....|
T Consensus       133 gGSmg~~~geKi~r~~e~A~~~~l-P-lV~l~dSgGa-----RmqEg~---------~sL~~~-ak~~~~~~~~~~~~vP  195 (285)
T TIGR00515       133 GGSMGSVVGEKFVRAIEKALEDNC-P-LIIFSASGGA-----RMQEAL---------LSLMQM-AKTSAALAKMSERGLP  195 (285)
T ss_pred             CCCccHHHHHHHHHHHHHHHHcCC-C-EEEEEcCCCc-----ccccch---------hHHHhH-HHHHHHHHHHHcCCCC
Confidence            458999999999999999987644 4 6666655543     222110         011111 1122344455667899


Q ss_pred             EEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC-CHHHHHH
Q 041046          103 TVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI-KGEEALR  180 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~-~a~eA~~  180 (243)
                      .|+++.|+|.||+. .+++.+|+++|.++ +.+++.       -|.    .+...+| ...      . +.+ +|+-+.+
T Consensus       196 ~IsVv~gpt~GG~aas~a~~~D~iia~p~-A~ig~a-------Gpr----Vie~ti~-e~l------p-e~~q~ae~~~~  255 (285)
T TIGR00515       196 YISVLTDPTTGGVSASFAMLGDLNIAEPK-ALIGFA-------GPR----VIEQTVR-EKL------P-EGFQTSEFLLE  255 (285)
T ss_pred             EEEEEeCCcchHHHHHHHhCCCEEEEECC-eEEEcC-------CHH----HHHHHhc-Ccc------c-hhcCCHHHHHh
Confidence            99999999999965 56789999999887 655431       121    2222233 111      1 223 5666788


Q ss_pred             cCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          181 MGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       181 ~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      .|+||.|+++ .++.+...++.+.+...
T Consensus       256 ~G~vD~iv~~-~~~r~~l~~~L~~~~~~  282 (285)
T TIGR00515       256 HGAIDMIVHR-PEMKKTLASLLAKLQNL  282 (285)
T ss_pred             CCCCcEEECc-HHHHHHHHHHHHHHhhC
Confidence            9999999999 78888887777665443

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=98.04  E-value=0.0002  Score=58.31  Aligned_cols=138  Identities=13%  Similarity=0.153  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++...+...|-.++..+.-+ ..+.+.+.|      .|+..                    ...++..|...+.||.
T Consensus        36 i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG------G~v~~--------------------GlaIyd~m~~~~~~V~   89 (201)
T PRK14513         36 IESQMANTIVAQLLLLDSQNPEQEIQMYINCPG------GEVYA--------------------GLAIYDTMRYIKAPVS   89 (201)
T ss_pred             EcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC------Cchhh--------------------HHHHHHHHHhcCCCEE
Confidence            88889999988888888533211 135554444      33322                    2446667778889999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCC--Cchhh--HH-----------HHHHHhCC-HHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGAT--LPDYF--TA-----------LFRAKVGS-ATARRDV  166 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l~~~~g~-~~~a~~l  166 (243)
                      ..+.|.|.+.|.-+++++|-  |++.++ +.+-+-....|..  .++.-  +.           .+.++-|. .....++
T Consensus        90 Ti~~G~AaS~As~il~aG~kgkR~~~pn-a~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~  168 (201)
T PRK14513         90 TICVGIAMSMGSVLLMAGDKGKRMALPN-SRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRD  168 (201)
T ss_pred             EEEEeeehhhHHHHHhcCCCCcEEecCC-eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            99999999999999999995  899888 6665544443330  01110  00           01112221 2233444


Q ss_pred             HhccCCCCHHHHHHcCchhhhcCC
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +-...-++|+||+++||+|+|+.+
T Consensus       169 ~~rd~~msa~EA~eyGliD~I~~~  192 (201)
T PRK14513        169 MERDYFMSPEEAKAYGLIDSVIEP  192 (201)
T ss_pred             hccCcccCHHHHHHcCCCcEEecc
Confidence            444556999999999999999975

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.98  E-value=0.001  Score=61.73  Aligned_cols=175  Identities=13%  Similarity=0.107  Sum_probs=108.1

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      +|.-.-|.-|+|. ...-++++...+...+.++.+.+..- - +|.+...++ |..|.+-+              .....
T Consensus       313 ~G~~V~vvAnd~~-~~~G~~~~~~~~K~~r~i~~a~~~~l-P-lV~lvDs~G-~~~g~~~E--------------~~g~~  374 (512)
T TIGR01117       313 NGQSVGIIANQPK-VMAGCLDIDSSDKIARFIRFCDAFNI-P-IVTFVDVPG-FLPGVNQE--------------YGGII  374 (512)
T ss_pred             CCEEEEEEEeccc-cccCCCCHHHHHHHHHHHHHHHHcCC-C-EEEEEeCcC-ccccHHHH--------------HHHHH
Confidence            3433334445552 12347999999999999999987544 4 555554444 44443222              12234


Q ss_pred             HhHHHHHHHHhcCCCcEEEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHH-HHhC---
Q 041046           87 ESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR-AKVG---  158 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~-~~~g---  158 (243)
                      ....+++.++....+|.|++|-|.+.|+|+.-..    .+|++++.++ +.+       |+.-|...+..+- +.+.   
T Consensus       375 ~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~am~~~~~~~d~~~a~p~-a~~-------~v~~pe~a~~i~~~~~l~~~~  446 (512)
T TIGR01117       375 RHGAKVLYAYSEATVPKVTIITRKAYGGAYLAMCSKHLGADQVYAWPT-AEI-------AVMGPAGAANIIFRKDIKEAK  446 (512)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEcCCCchHHHHHhccccCCCCEEEEcCC-CeE-------eecCHHHHHHHHhhhhccccc
Confidence            4566777888889999999999999988665443    3899999887 544       4422444343332 2221   


Q ss_pred             CHHHHHH--HH-hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          159 SATARRD--VL-LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       159 ~~~~a~~--l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      ....++.  +. ..-+.-++..+.+.|+||.|+++ .+......+..+.+..+
T Consensus       447 ~~~~~~~~~~~~~~~~~~~~~~~a~~g~vD~VI~P-~~tR~~l~~~l~~~~~~  498 (512)
T TIGR01117       447 DPAATRKQKIAEYREEFANPYKAAARGYVDDVIEP-KQTRPKIVNALAMLESK  498 (512)
T ss_pred             CHHHHHHHHHHHHHHhhcCHHHHHhcCCCCeeECh-HHHHHHHHHHHHHHhcC
Confidence            0111111  11 11234578999999999999998 77777777666655443

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK10949 protease 4; Provisional

Probab=97.95  E-value=0.00027  Score=66.90  Aligned_cols=83  Identities=16%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECc
Q 041046           30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG  109 (243)
Q Consensus        30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G  109 (243)
                      .+.++.++|+++.+|+.|+ .||+.-.+.  . |..+..+                 +.+.+.+..+....||+||. ..
T Consensus        96 ~l~div~~i~~Aa~D~rIk-givL~i~s~--g-G~~~a~~-----------------~eI~~ai~~fk~sGKpVvA~-~~  153 (618)
T PRK10949         96 SLFDIVNTIRQAKDDRNIT-GIVLDLKNF--A-GADQPSM-----------------QYIGKALREFRDSGKPVYAV-GD  153 (618)
T ss_pred             cHHHHHHHHHHHhcCCCce-EEEEEeCCC--C-CccHHHH-----------------HHHHHHHHHHHHhCCeEEEE-ec
Confidence            4568999999999999999 788876421  1 2222111                 12344445555678999985 44


Q ss_pred             ccchhHHHHHHhccEEEEecCCccee
Q 041046          110 HAAAAGFTLALSHDYVIMRRDKGVLY  135 (243)
Q Consensus       110 ~a~G~G~~la~~~D~~ia~~~~~~f~  135 (243)
                      .+.-+++.++.+||-+++.+. +.++
T Consensus       154 ~~~s~~YyLASaAD~I~l~P~-G~v~  178 (618)
T PRK10949        154 SYSQGQYYLASFANKIYLSPQ-GVVD  178 (618)
T ss_pred             CccchhhhhhhhCCEEEECCC-ceEE
Confidence            445678999999999999877 5554

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=97.90  E-value=0.00052  Score=63.54  Aligned_cols=144  Identities=22%  Similarity=0.244  Sum_probs=93.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCC--ChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGL--DLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDL   99 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~--dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   99 (243)
                      ..-++.....+.+..+++.+.++.-+  +|.+..     |.|.  .+++-..         ....+.. +..-..++.. 
T Consensus        69 ~gGs~g~~~~~Ki~ra~~~A~~~~~P--~v~l~d-----sgGa~~r~~eg~~---------~l~~~g~-i~~~~~~~~~-  130 (493)
T PF01039_consen   69 LGGSVGEVHGEKIARAIELALENGLP--LVYLVD-----SGGAFLRMQEGVE---------SLMGMGR-IFRAIARLSG-  130 (493)
T ss_dssp             GGGTBSHHHHHHHHHHHHHHHHHTEE--EEEEEE-----ESSBCGGGGGHHH---------HHHHHHH-HHHHHHHHHT-
T ss_pred             ecCCCCcccceeeehHHHHHHHcCCC--cEEecc-----ccccccccchhhh---------hhhhhHH-HHHHHHHHhc-
Confidence            34689999999999999999987654  344432     3444  4443221         1112222 2233344555 


Q ss_pred             CCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHH--
Q 041046          100 PMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE--  177 (243)
Q Consensus       100 ~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e--  177 (243)
                      ..|+|+++.|+|.|+|..++..||++|++++.+.+       ++.-              +...+  ..+|+.++.++  
T Consensus       131 ~iP~I~vv~G~~~Gg~A~~~~~~d~~i~~~~~a~i-------~l~G--------------P~vv~--~~~Ge~~~~~~lg  187 (493)
T PF01039_consen  131 GIPQISVVTGPCTGGGAYLAALSDFVIMVKGTARI-------FLAG--------------PRVVE--SATGEEVDSEELG  187 (493)
T ss_dssp             TS-EEEEEESEEEGGGGHHHHHSSEEEEETTTCEE-------ESST--------------HHHHH--HHHSSCTSHHHHH
T ss_pred             CCCeEEEEccccccchhhcccccCccccCccceEE-------Eecc--------------ccccc--cccCccccchhhh
Confidence            99999999999999999999999999999874544       3321              22211  12467777665  


Q ss_pred             -----HHHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          178 -----ALRMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       178 -----A~~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                           +...|.+|.++++.++..+.+.++...+-
T Consensus       188 G~~~h~~~sG~~d~v~~de~~a~~~ir~~ls~lp  221 (493)
T PF01039_consen  188 GADVHAAKSGVVDYVVDDEEDALAQIRRLLSYLP  221 (493)
T ss_dssp             BHHHHHHTSSSSSEEESSHHHHHHHHHHHHHTS-
T ss_pred             hhhhhcccCCCceEEEechHHHHHHHHHhhcccc
Confidence                 34789999999986666666666665554

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=97.79  E-value=0.0017  Score=60.86  Aligned_cols=147  Identities=14%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      ..-+++....+.+.++++.+.+..-+  +|.+...|+.+-.+ ..+.+..       ..   .+. .+..-..++.....
T Consensus       141 ~GGs~g~~~~~Ki~r~~elA~~~~lP--lV~l~DSgGarl~~-q~e~~~~-------~~---~~g-~if~~~~~ls~~~V  206 (569)
T PLN02820        141 KGGTYYPITVKKHLRAQEIAAQCRLP--CIYLVDSGGANLPR-QAEVFPD-------RD---HFG-RIFYNQARMSSAGI  206 (569)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCCcCCcc-cccccch-------Hh---HHH-HHHHHHHHHhCCCC
Confidence            35689999999999999999887554  55554444333211 0011100       00   111 11122223455679


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH---
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA---  178 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---  178 (243)
                      |.|+++.|+|.|||......||++|++++.+.++       +.    |          +...+.  .+|+.+++++.   
T Consensus       207 P~Isvv~G~~~gGgAy~~a~~D~vim~~~~a~i~-------~a----G----------P~vV~~--~~Ge~v~~eeLGGa  263 (569)
T PLN02820        207 PQIALVLGSCTAGGAYVPAMADESVIVKGNGTIF-------LA----G----------PPLVKA--ATGEEVSAEDLGGA  263 (569)
T ss_pred             CEEEEEeCCCChHHHHHHHhCCceEEecCCcEEE-------ec----C----------HHHHHh--hcCcccCHHHhCCH
Confidence            9999999999999999999999999998755443       21    1          111111  13444554443   


Q ss_pred             --H--HcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          179 --L--RMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                        +  ..|.+|.++++..+..+.+.++...|
T Consensus       264 ~~h~~~sGv~d~~~~de~~a~~~~R~lls~L  294 (569)
T PLN02820        264 DVHCKVSGVSDHFAQDELHALAIGRNIVKNL  294 (569)
T ss_pred             HHhcccccccccccCchHHHHHHHHHHHHhc
Confidence              2  47999999988666666666666555

>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed

Probab=97.76  E-value=0.0054  Score=52.65  Aligned_cols=146  Identities=12%  Similarity=0.108  Sum_probs=87.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHH-HhcCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAA-MMDLP  100 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~  100 (243)
                      ..-++....-+.+.++++.+.+..-+  +|++..+|+     +-+++-..        . ...+.. ....+.. ...-.
T Consensus       145 ~gGSmG~v~geKi~ra~e~A~~~rlP--lV~l~~SGG-----ARmQEg~~--------s-L~qmak-~saa~~~~~~~~~  207 (296)
T CHL00174        145 MGGSMGSVVGEKITRLIEYATNESLP--LIIVCASGG-----ARMQEGSL--------S-LMQMAK-ISSALYDYQSNKK  207 (296)
T ss_pred             cccCcCHHHHHHHHHHHHHHHHcCCC--EEEEECCCC-----ccccccch--------h-hhhhHH-HHHHHHHHHHcCC
Confidence            34689999999999999999877544  566655443     33332110        0 001111 1111222 22467


Q ss_pred             CcEEEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHH
Q 041046          101 MPTVAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEAL  179 (243)
Q Consensus       101 kp~Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~  179 (243)
                      .|.|+++.|+|.||+.. +++.||++|+.++ +.++       +    .|...+...+| ...      .-.-=+|+-.+
T Consensus       208 vP~Isvl~gPt~GG~aas~a~l~Diiiae~~-A~Ig-------f----AGPrVIe~t~g-e~l------pe~fq~ae~l~  268 (296)
T CHL00174        208 LFYISILTSPTTGGVTASFGMLGDIIIAEPN-AYIA-------F----AGKRVIEQTLN-KTV------PEGSQAAEYLF  268 (296)
T ss_pred             CCEEEEEcCCCchHHHHHHHHcccEEEEeCC-eEEE-------e----eCHHHHHHhcC-CcC------CcccccHHHHH
Confidence            99999999999999765 5677999999554 5443       3    11111111122 100      11112467788


Q ss_pred             HcCchhhhcCChHHHHHHHHHHHHH
Q 041046          180 RMGLVQAAYDSEEQVAEASMRLAKQ  204 (243)
Q Consensus       180 ~~Glv~~v~~~~~~l~~~a~~~a~~  204 (243)
                      +.|+||.||+. .++.+...++.+-
T Consensus       269 ~~G~vD~iV~r-~~lr~~l~~ll~~  292 (296)
T CHL00174        269 DKGLFDLIVPR-NLLKGVLSELFQL  292 (296)
T ss_pred             hCcCceEEEcH-HHHHHHHHHHHHh
Confidence            99999999998 7787777666543

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=97.74  E-value=0.0015  Score=60.63  Aligned_cols=145  Identities=12%  Similarity=0.148  Sum_probs=90.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      ..-++.....+.+.++++.+.++.-+  +|.+..+|+.     .+.+-..         ....+.+.+...  ....-..
T Consensus        94 ~gGS~g~~~~~K~~r~~e~A~~~~lP--lV~l~dSgGa-----rm~eg~~---------~l~~~~~~~~~~--~~~s~~i  155 (512)
T TIGR01117        94 MGGSLGEMHAAKIVKIMDLAMKMGAP--VVGLNDSGGA-----RIQEAVD---------ALKGYGDIFYRN--TIASGVV  155 (512)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHcCCC--EEEEecCCCC-----Cccccch---------hhhhHHHHHHHH--HHHcCCC
Confidence            34589999999999999999887654  4555443332     2221000         000111111111  1123468


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH---
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA---  178 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---  178 (243)
                      |.|+++.|+|.||+......||++|++++.+.++       +    .|...+...            +|+.+++++.   
T Consensus       156 P~Isvv~G~~~GG~a~~~al~D~vim~~~~a~i~-------~----aGP~vv~~~------------~Ge~v~~e~lGGa  212 (512)
T TIGR01117       156 PQISAIMGPCAGGAVYSPALTDFIYMVDNTSQMF-------I----TGPQVIKTV------------TGEEVTAEQLGGA  212 (512)
T ss_pred             cEEEEEecCCCcHHHHHHHhcCceEEeccceEEE-------e----cChHHHHhh------------cCcccchhhcchH
Confidence            9999999999999988888999999998744443       2    111111111            2444444433   


Q ss_pred             --H--HcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          179 --L--RMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       179 --~--~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                        +  ..|.+|.++++.++..+.+.++...+-.
T Consensus       213 ~~h~~~sGv~d~~~~de~ea~~~~r~~ls~lp~  245 (512)
T TIGR01117       213 MAHNSVSGVAHFIAEDDDDCIMLIRRLLSFLPS  245 (512)
T ss_pred             HHhccccceeEEecCChHHHHHHHHHHHHhCCc
Confidence              3  5899999999988888888888776644

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=97.71  E-value=0.0016  Score=52.72  Aligned_cols=136  Identities=18%  Similarity=0.190  Sum_probs=80.4

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+...+...+-.++.++..+ ..+.+-+.|+...+|                          ..++..+...+.||.
T Consensus        36 I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG--------------------------~AIydtm~~ik~~V~   89 (200)
T COG0740          36 IEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAG--------------------------LAIYDTMQFIKPPVS   89 (200)
T ss_pred             echHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchh--------------------------HHHHHHHHhcCCCeE
Confidence            55555555555555555433222 145555555444333                          345567778999999


Q ss_pred             EEECcccchhHHHHHHhccEE--EEecCCcceeecccccCCCCchhhHH--HHHH-H--h------------CC-HHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDYV--IMRRDKGVLYMSEVDIGATLPDYFTA--LFRA-K--V------------GS-ATARR  164 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~--ia~~~~~~f~~pe~~~Gl~~p~~g~~--~l~~-~--~------------g~-~~~a~  164 (243)
                      ..+-|.|...|.-|++++|..  ++.++ +++=.-... |. +-+....  .-.+ +  +            |. ...-.
T Consensus        90 ti~~G~AaSmgs~l~~aG~~g~r~~lPn-srimIHqP~-gg-~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~  166 (200)
T COG0740          90 TICMGQAASMGSVLLMAGDKGKRFALPN-ARIMIHQPS-GG-AQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIE  166 (200)
T ss_pred             EEEecHHHhHHHHHHhcCCCCCceeCCC-ceEEEecCC-cc-CccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            999999999999999999985  88787 554433333 32 1111111  1111 1  1            10 01111


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ..+-...-++|+||+++||+|+|...
T Consensus       167 ~d~drd~~msa~eA~~yGLiD~V~~~  192 (200)
T COG0740         167 KDTDRDTWMSAEEAKEYGLIDKVIES  192 (200)
T ss_pred             HhhcccccCCHHHHHHcCCcceeccc
Confidence            22222344999999999999999986

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=97.70  E-value=0.0019  Score=53.23  Aligned_cols=146  Identities=12%  Similarity=0.111  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCC-CeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATP-GSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i-~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .+.++.+.+...+-.++.++.- ..-+.+.+.|+...+|-=+....                 ....++..+...+-|+.
T Consensus        49 ~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv~~G~~iG~v~-----------------~glaIyD~m~~ik~~V~  111 (222)
T PRK12552         49 VGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFET-----------------EAFAICDTMRYIKPPVH  111 (222)
T ss_pred             hhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCccccccccccc-----------------cHHHHHHHHHhcCCCeE
Confidence            4445888998888888754321 12466666666555552111111                 13456667777888999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-HHHHHH---------------HhCC-HHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-TALFRA---------------KVGS-ATARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~---------------~~g~-~~~a~~  165 (243)
                      ..+-|.|.+.+.-|++++|-  |++.++ +.+-+-....|. ..... ...-.+               +-|. ...-.+
T Consensus       112 Tv~~G~AaS~AslIl~aG~kg~R~alpn-s~iMIHqP~~~~-~G~A~di~~~a~el~~~r~~l~~iya~~TG~~~e~I~~  189 (222)
T PRK12552        112 TICIGQAMGTAAMILSAGTKGQRASLPH-ATIVLHQPRSGA-RGQATDIQIRAKEVLHNKRTMLEILSRNTGQTVEKLSK  189 (222)
T ss_pred             EEEEeehhhHHHHHHhCCCCCceecCCC-cEEEeccCCccc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999995  888888 666554444333 11110 111111               1110 111122


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      .+-.-.-++|+||+++||+|+|+.+
T Consensus       190 d~~rd~wmsA~EA~eyGliD~Ii~~  214 (222)
T PRK12552        190 DTDRMFYLTPQEAKEYGLIDRVLES  214 (222)
T ss_pred             HhcCCCcCCHHHHHHcCCCcEEecc
Confidence            2333344999999999999999965

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=97.40  E-value=0.0018  Score=59.53  Aligned_cols=145  Identities=22%  Similarity=0.258  Sum_probs=89.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      +.-++..-..+.+..+.+.+.++..+. +.+..+.|..---|     +...       ....    .+..-..++... .
T Consensus       103 ~gGt~~~~~~~Ki~r~~~~A~~~g~P~-i~l~dsgGari~~~-----v~~l-------~g~g----~iF~~~a~~Sg~-I  164 (526)
T COG4799         103 KGGTLGEMTAKKILRAQELAIENGLPV-IGLNDSGGARIQEG-----VPSL-------AGYG----RIFYRNARASGV-I  164 (526)
T ss_pred             ecccccccccchHHHHHHHHHHcCCCE-EEEEcccccccccC-----cccc-------ccch----HHHHHHHHhccC-C
Confidence            566788888888999999999877764 55555544322222     1110       0011    111222233444 9


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHH----
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE----  177 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e----  177 (243)
                      |.|++|.|+|.|||..+...||++|++++.+.+       .++-|+.-    -.            .||+.++++|    
T Consensus       165 PqIsvv~G~c~gGgaY~pal~D~~imv~~~~~m-------fltGP~~i----k~------------vtGe~V~~e~LGGa  221 (526)
T COG4799         165 PQISVVMGPCAGGGAYSPALTDFVIMVRDQSYM-------FLTGPPVI----KA------------VTGEEVSAEELGGA  221 (526)
T ss_pred             CEEEEEEecCcccccccccccceEEEEcCCccE-------EeeCHHHH----Hh------------hcCcEeehhhccch
Confidence            999999999999999999999999999985433       23222221    11            1344444332    


Q ss_pred             ---HHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          178 ---ALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       178 ---A~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                         +...|.+|.+.++.++..+.+.++..-+-.
T Consensus       222 ~vh~~~sGva~~~a~dd~~Ai~~vr~~lsylp~  254 (526)
T COG4799         222 QVHARKSGVADLLAEDDEDAIELVRRLLSYLPS  254 (526)
T ss_pred             hhhcccccceeeeecCHHHHHHHHHHHHHhcCc
Confidence               234599999998866656666666555543

>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]

Probab=97.25  E-value=0.014  Score=49.24  Aligned_cols=150  Identities=13%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++..-.=+.+..+++++-++.- . +|+++.+|+     +-+++-.-         ..-+ .......+.++.....|
T Consensus       135 gGSmGsVvGeki~ra~E~A~e~k~-P-~v~f~aSGG-----ARMQEg~l---------SLMQ-MaktsaAl~~l~ea~lp  197 (294)
T COG0777         135 GGSMGSVVGEKITRAIERAIEDKL-P-LVLFSASGG-----ARMQEGIL---------SLMQ-MAKTSAALKRLSEAGLP  197 (294)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhCC-C-EEEEecCcc-----hhHhHHHH---------HHHH-HHHHHHHHHHHHhcCCc
Confidence            456777788999999999998754 4 788876554     33333110         0011 12345567777888999


Q ss_pred             EEEEECcccchh-HHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHc
Q 041046          103 TVAAVNGHAAAA-GFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRM  181 (243)
Q Consensus       103 ~Ia~v~G~a~G~-G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~  181 (243)
                      .|+++..+..|| -..+++..|+.||-+. +.+       |+.-|..--+.+.+.++ ...          =+++-.++.
T Consensus       198 yIsVLt~PTtGGVsASfA~lGDi~iAEP~-AlI-------GFAGpRVIEQTire~LP-egf----------Q~aEfLleh  258 (294)
T COG0777         198 YISVLTDPTTGGVSASFAMLGDIIIAEPG-ALI-------GFAGPRVIEQTIREKLP-EGF----------QTAEFLLEH  258 (294)
T ss_pred             eEEEecCCCccchhHhHHhccCeeecCcc-ccc-------ccCcchhhhhhhcccCC-cch----------hhHHHHHHc
Confidence            999999999988 4689999999999555 544       44222222344444443 111          135667799


Q ss_pred             CchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          182 GLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       182 Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      |+||.||+. .++......+.+.+...+
T Consensus       259 G~iD~iv~R-~elr~tla~ll~~~~~~~  285 (294)
T COG0777         259 GMIDMIVHR-DELRTTLASLLAKLTPQP  285 (294)
T ss_pred             CCceeeecH-HHHHHHHHHHHHHhCCCC
Confidence            999999998 788888888888777665

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=97.13  E-value=0.015  Score=49.44  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=87.3

Q ss_pred             CHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046           27 GPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA  106 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  106 (243)
                      +++-+..=.+.++.++.=.-+- +.++--.|.+-+.|+  ++...              .+.+.+-+..+.++++|+|+.
T Consensus       132 ~PeGyRKAlRlm~~AekF~lPi-itfIDT~GAypG~~A--EErGQ--------------~eAIA~nL~em~~LkvPiI~i  194 (317)
T COG0825         132 RPEGYRKALRLMKLAEKFGLPI-ITFIDTPGAYPGIGA--EERGQ--------------SEAIARNLREMARLKVPIISI  194 (317)
T ss_pred             CchHHHHHHHHHHHHHHhCCCE-EEEecCCCCCCCcch--hhccc--------------HHHHHHHHHHHhCCCCCEEEE
Confidence            3777777777777777543332 444444444444333  33222              123445556778999999999


Q ss_pred             ECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchh
Q 041046          107 VNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQ  185 (243)
Q Consensus       107 v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~  185 (243)
                      |=|-..+||.--...+|.+++-++ ++++.        +++-| +..|=+ =  ..++.+. -....++|.+.+++|+||
T Consensus       195 VIGEGgSGGALAi~vad~V~mle~-s~ySV--------isPEG~AsILWk-D--~~ka~eA-Ae~mkita~dLk~lgiID  261 (317)
T COG0825         195 VIGEGGSGGALAIGVADRVLMLEN-STYSV--------ISPEGCASILWK-D--ASKAKEA-AEAMKITAHDLKELGIID  261 (317)
T ss_pred             EecCCCchhhHHhhHHHHHHHHHh-ceeee--------cChhhhhhhhhc-C--hhhhHHH-HHHcCCCHHHHHhCCCcc
Confidence            999988888877778999999988 67662        34444 333322 2  2333332 246789999999999999


Q ss_pred             hhcCC
Q 041046          186 AAYDS  190 (243)
Q Consensus       186 ~v~~~  190 (243)
                      .|++.
T Consensus       262 ~II~E  266 (317)
T COG0825         262 GIIPE  266 (317)
T ss_pred             eeccC
Confidence            99984

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=96.91  E-value=0.17  Score=47.69  Aligned_cols=158  Identities=11%  Similarity=0.013  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      +++.+..+...+.++.+++. .+- +|.|...++ |..|.+-+.              .-....+.+++.++....+|.|
T Consensus       381 ~l~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~pG-f~~G~~~E~--------------~G~~~~~a~l~~A~a~~~VP~i  443 (569)
T PLN02820        381 ILFTESALKGAHFIELCAQR-GIP-LLFLQNITG-FMVGSRSEA--------------SGIAKAGAKMVMAVACAKVPKI  443 (569)
T ss_pred             ccCHHHHHHHHHHHHHHHhc-CCC-EEEEEECCC-CCCCHHHHH--------------hhHHHHHHHHHHHHHhCCCCEE
Confidence            47889999999999888875 444 555554433 555543332              2345667888999999999999


Q ss_pred             EEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhh-HHHHHH-Hh------C-----CHHHH-HH-
Q 041046          105 AAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KV------G-----SATAR-RD-  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~------g-----~~~~a-~~-  165 (243)
                      ++|-|.++|+|..-..    ..|++++.++ +       .+|. ++.-+ +..+.+ .+      |     ....+ ++ 
T Consensus       444 svi~g~a~G~g~~aM~g~~~~~d~~~awp~-A-------~i~v-mg~e~aa~il~~~e~~~~~~~~~~~~~~~~~~~~~~  514 (569)
T PLN02820        444 TIIVGGSFGAGNYGMCGRAYSPNFLFMWPN-A-------RIGV-MGGAQAAGVLAQIERENKKRQGIQWSKEEEEAFKAK  514 (569)
T ss_pred             EEEECCcchHHHHHhcCcCCCCCEEEECCC-C-------eEEe-cCHHHHHHHHHHHHhhhhhhccccCCccHHHHHHHH
Confidence            9999999998876553    5677777766 4       4455 44444 333322 12      1     01100 11 


Q ss_pred             H-HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          166 V-LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       166 l-~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      + -..-+..++-.|.+.|++|.|+++ .+.........+.....+
T Consensus       515 ~~~~~~~~~~p~~aa~~~~vD~VIdP-~dTR~~l~~~l~~~~~~~  558 (569)
T PLN02820        515 TVEAYEREANPYYSTARLWDDGVIDP-ADTRRVLGLCLSAALNRS  558 (569)
T ss_pred             HHHHHHHhCCHHHHHHcCCcCcccCH-HHHHHHHHHHHHHhhcCC
Confidence            1 112335678889999999999998 566666555555444443

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=96.83  E-value=0.021  Score=53.06  Aligned_cols=158  Identities=9%  Similarity=0.099  Sum_probs=98.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      +++++......+.++.+++. .+- +|.|... ..|..|-              ..+.........+++.++..++.|.|
T Consensus       309 ~~~~~~a~K~arfi~lcd~~-~iP-lv~l~dt-pGf~~g~--------------~~E~~g~~~~ga~~~~a~~~~~vP~i  371 (493)
T PF01039_consen  309 ALDPDGARKAARFIRLCDAF-NIP-LVTLVDT-PGFMPGP--------------EAERAGIIRAGARLLYALAEATVPKI  371 (493)
T ss_dssp             EB-HHHHHHHHHHHHHHHHT-T---EEEEEEE-CEB--SH--------------HHHHTTHHHHHHHHHHHHHHH-S-EE
T ss_pred             cCChHHHHHHHHHHHHHHhh-CCc-eEEEeec-ccccccc--------------hhhhcchHHHHHHHHHHHHcCCCCEE
Confidence            69999999999999999974 445 6666543 2343332              22223445667889999999999999


Q ss_pred             EEECcccchhHHHHHHhc----cEEEEecCCcceeecccccCCCCchhh-HHHHHH-HhC-------CHH--HHHHHHh-
Q 041046          105 AAVNGHAAAAGFTLALSH----DYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KVG-------SAT--ARRDVLL-  168 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~----D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~g-------~~~--~a~~l~l-  168 (243)
                      .++-|.+.|+|+......    |+++|.++ +.+       |+ +++-+ +..+.+ ..-       ...  ....+-- 
T Consensus       372 tvi~~~~~Gga~~am~~~~~~~~~~~Awp~-a~~-------~v-m~~e~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (493)
T PF01039_consen  372 TVIVRKAYGGAYYAMCGRGYGPDFVFAWPT-AEI-------GV-MGPEGAASILYRDELEAAEAEGADPEAQRAEKIAEY  442 (493)
T ss_dssp             EEEEEEEEHHHHHHTTGGGGTTSEEEEETT--EE-------ES-S-HHHHHHHHTHHHHHHSCHCCHSHHHHHHHHHHHH
T ss_pred             EEEeCCccCcchhhhcccccchhhhhhhhc-cee-------ee-cChhhhheeeehhhhhhhhcccchhHHHHHHHHHHH
Confidence            999999999988665555    78888777 544       44 34343 332222 110       000  1111111 


Q ss_pred             ccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       169 ~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      .-+.-++..+.+.|++|.|+++ .+..........-..+++
T Consensus       443 ~~~~~~~~~~a~~~~~D~ii~p-~~tR~~l~~~l~~~~~~~  482 (493)
T PF01039_consen  443 EDELSSPYRAASRGYVDDIIDP-AETRKVLIAALEMLWQKP  482 (493)
T ss_dssp             HHHHSSHHHHHHTTSSSEESSG-GGHHHHHHHHHHHHTTSH
T ss_pred             HHhcCCHHHHHhcCCCCCccCH-HHHHHHHHHHHHHHHhCc
Confidence            1223689999999999999998 667777766666555543

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.19  Score=42.10  Aligned_cols=133  Identities=14%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++.+.+...|-.++.+++-|= .+-+.+.|+.-.+|                          ..++..+..++-||-
T Consensus       101 Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtag--------------------------lAIYDtMq~ik~~V~  154 (275)
T KOG0840|consen  101 IDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAG--------------------------LAIYDTMQYIKPDVS  154 (275)
T ss_pred             CcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchh--------------------------hhHHHHHHhhCCCce
Confidence            888899999988888886555441 23333333333222                          234445556666766


Q ss_pred             EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHH--------HHHHHhCCHHHHHHHH--hccCC--
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--------LFRAKVGSATARRDVL--LRAKK--  172 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~--------~l~~~~g~~~~a~~l~--l~g~~--  172 (243)
                      ..+-|.|.+-|.-|+.+     .+. .-++++|..++=++-|.+|..        ...+.+-....-.+++  .||++  
T Consensus       155 Tic~G~Aas~aalLLaa-----G~K-G~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e  228 (275)
T KOG0840|consen  155 TICVGLAASMAALLLAA-----GAK-GKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLE  228 (275)
T ss_pred             eeehhhHHhHHHHHHhc-----CCC-cceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHH
Confidence            66667777766554443     122 356777777776665655421        1111121011111111  34544  


Q ss_pred             -----------CCHHHHHHcCchhhhcCC
Q 041046          173 -----------IKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       173 -----------~~a~eA~~~Glv~~v~~~  190 (243)
                                 ++|+||+++||||+|.+.
T Consensus       229 ~i~~d~dRd~fmsa~EA~eyGliD~v~~~  257 (275)
T KOG0840|consen  229 VIEKDMDRDRFMSAEEAKEYGLIDKVIDH  257 (275)
T ss_pred             HHHhhhcccccCCHHHHHHhcchhhhhcC
Confidence                       899999999999999974

>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]

Probab=93.38  E-value=2.1  Score=39.90  Aligned_cols=167  Identities=11%  Similarity=0.131  Sum_probs=102.9

Q ss_pred             EEEcCCCCCCCC-CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHH
Q 041046           13 LTLTGSSDVDEH-RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP   91 (243)
Q Consensus        13 i~ln~p~~~~~N-~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      |.=|.|.  ..| .++.+..+.-.+.++.... ..+- +|.|... ..|.-|-+-+.              ....+...+
T Consensus       328 iIANqp~--~~~G~l~~~sa~KaArFI~~cd~-~~iP-lv~L~d~-pGFm~G~~~E~--------------~giik~Gak  388 (526)
T COG4799         328 IIANQPR--HLGGVLDIDSADKAARFIRLCDA-FNIP-LVFLVDT-PGFMPGTDQEY--------------GGIIKHGAK  388 (526)
T ss_pred             EEecCcc--ccccccchHHHHHHHHHHHhhhc-cCCC-eEEEeCC-CCCCCChhHHh--------------ChHHHhhhH
Confidence            3345564  344 8999999999998855554 4555 5666443 55877775543              334556788


Q ss_pred             HHHHHhcCCCcEEEEECcccchhHHHHH----HhccEEEEecCCcceeecccccCCCCchhh-HHHHH-HHhC---CHHH
Q 041046           92 VVAAMMDLPMPTVAAVNGHAAAAGFTLA----LSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR-AKVG---SATA  162 (243)
Q Consensus        92 ~~~~l~~~~kp~Ia~v~G~a~G~G~~la----~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~-~~~g---~~~~  162 (243)
                      ++.++....+|.|..|-|.++|+|....    +.+|+.+|.++ +       ++++ ..+-| ...+. +.+-   .+..
T Consensus       389 l~~A~aeatVPkitvI~rkayGga~~~M~~~~~~~~~~~AwP~-a-------~iaV-MG~egAv~i~~~k~l~~~~~~~~  459 (526)
T COG4799         389 LLYAVAEATVPKITVITRKAYGGAYYVMGGKALGPDFNYAWPT-A-------EIAV-MGPEGAVSILYRKELAAAERPEE  459 (526)
T ss_pred             HHhhHhhccCCeEEEEecccccceeeeecCccCCCceeEecCc-c-------eeee-cCHHHHHHHHHHHHhhcccCchh
Confidence            9999999999999999999999997543    34666666555 3       5555 33333 33322 2221   0111


Q ss_pred             HH----H-HH--hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          163 RR----D-VL--LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       163 a~----~-l~--l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      -.    + +.  ..-+-..+--|.+.|++|.|++. .+...........+..+
T Consensus       460 ~~~~~~~~~~~eY~~~~~~p~~aa~r~~iD~vI~p-~~tR~~L~~~l~~~~~k  511 (526)
T COG4799         460 REALLRKQLIAEYEEQFSNPYYAAERGYIDAVIDP-ADTRAVLGRALSALANK  511 (526)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHhCCCCcccCH-HHHHHHHHHHHHHHhcC
Confidence            00    0 10  11122466778899999999998 45555555555555544

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=91.89  E-value=5  Score=33.43  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=67.3

Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHH-HHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF-TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~-~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      +..++....+-+...+...-|+|+.|-|.+++||| ...+.+|-+||-++ +.+       -. .+--.+.+..++=  .
T Consensus        87 i~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~rl~AL~g-a~i-------~v-M~~~s~ARVTk~~--v  155 (234)
T PF06833_consen   87 INQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQANRLIALPG-AMI-------HV-MGKPSAARVTKRP--V  155 (234)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhcchhcCCC-Cee-------ec-CChHHhHHHhhcC--H
Confidence            45666666677777788899999999999999998 58889998888764 322       22 2333345555442  3


Q ss_pred             HHHHHHHhccCC--CCHHHHHHcCchhhhcC
Q 041046          161 TARRDVLLRAKK--IKGEEALRMGLVQAAYD  189 (243)
Q Consensus       161 ~~a~~l~l~g~~--~~a~eA~~~Glv~~v~~  189 (243)
                      ..-.++.-+--+  .+.+--.++|.++++.+
T Consensus       156 e~Le~la~s~PvfA~gi~ny~~lG~l~~l~~  186 (234)
T PF06833_consen  156 EELEELAKSVPVFAPGIENYAKLGALDELWD  186 (234)
T ss_pred             HHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence            444455544444  55778889999999998

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]

Probab=91.44  E-value=7.1  Score=35.61  Aligned_cols=163  Identities=9%  Similarity=-0.014  Sum_probs=99.3

Q ss_pred             EEEcCCCCCC-CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHH
Q 041046           13 LTLTGSSDVD-EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP   91 (243)
Q Consensus        13 i~ln~p~~~~-~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      |--|+|+  - .-.+..+....-.+.++.+.+. .+- .|.+...++ |-.|.+.+...-              .....+
T Consensus       353 Ivgnn~k--f~~G~L~s~sa~KgarfIe~c~q~-~IP-Li~l~ni~G-fm~g~~~e~~gI--------------aK~gAk  413 (536)
T KOG0540|consen  353 IVGNNPK--FAGGVLFSESAVKGARFIELCDQR-NIP-LIFLQNITG-FMVGRAAEAGGI--------------AKHGAK  413 (536)
T ss_pred             EeccCch--hcccccchhhhhhhHHHHHHHHhc-CCc-EEEEEccCC-ccccchhhhhch--------------hhhhhh
Confidence            4446662  1 2467777777777777777765 444 666666655 888887764332              233567


Q ss_pred             HHHHHhcCCCcEEEEECcccchhHHH---HHHhccEEEEecCCcceeecccccCCCCchhhHH-HHH-----HHhCCHHH
Q 041046           92 VVAAMMDLPMPTVAAVNGHAAAAGFT---LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFR-----AKVGSATA  162 (243)
Q Consensus        92 ~~~~l~~~~kp~Ia~v~G~a~G~G~~---la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~-----~~~g~~~~  162 (243)
                      ++.+....+.|-|..+.|.+.||-+.   .++.-|+.|+.++ +++++-        .+-++. .+.     +.+...+.
T Consensus       414 lv~a~a~akvpkITiit~~syGG~y~m~sr~~~gd~~yawP~-A~Iavm--------G~~~a~~Vi~q~~~e~a~~~~~~  484 (536)
T KOG0540|consen  414 LVYAVACAKVPKITIITGGSYGGNYAMCSRGYSGDINYAWPN-ARIAVM--------GGKQAANVIFQITLEKAVALKAP  484 (536)
T ss_pred             hhhhhhhccCceEEEEecCccCCcccccccccCCceeEEccc-ceeeec--------cccchhhhhhhhhhhhhhhhcch
Confidence            78888888999999999999997554   4567888888887 665521        111211 121     11211122


Q ss_pred             HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      ..+.+  |.++.+   ...||+|.|+++ .+.....-..-+..+.+|
T Consensus       485 ~~E~f--~npy~a---~~Rg~~D~II~p-~~tR~vl~~~l~~~~~~p  525 (536)
T KOG0540|consen  485 YIEKF--GNPYYA---AARGWDDGIIDP-SDTRKVLGLDLQAAANKP  525 (536)
T ss_pred             HHHHh--cCccHH---HHhhccccccCh-hHhhHHHHHHHHHHhcCC
Confidence            22333  666654   489999999998 444444333334444443

>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3

Probab=88.29  E-value=1.5  Score=38.27  Aligned_cols=79  Identities=23%  Similarity=0.230  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHHHHHhCC---CCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           28 PSAIDSILSAIAKAKAEA---TPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        28 ~~~~~~l~~~l~~~~~d~---~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .....++.++|+.+....   .+-++||.+|.|.       ++++... +              -..+.+++..+|.|+|
T Consensus        54 ~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs-------~eDL~~F-N--------------~e~varai~~~~~Pvi  111 (319)
T PF02601_consen   54 EGAAASIVSALRKANEMGQADDFDVIIIIRGGGS-------IEDLWAF-N--------------DEEVARAIAASPIPVI  111 (319)
T ss_pred             cchHHHHHHHHHHHHhccccccccEEEEecCCCC-------hHHhccc-C--------------hHHHHHHHHhCCCCEE
Confidence            356778888899988654   3444777787542       2222221 0              1567889999999999


Q ss_pred             EEECcccchhHHHHHHhccEEEEecC
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRD  130 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~  130 (243)
                      ++| ||-.-. .-.=+.+|+|..|+.
T Consensus       112 saI-GHe~D~-ti~D~vAd~ra~TPt  135 (319)
T PF02601_consen  112 SAI-GHETDF-TIADFVADLRAPTPT  135 (319)
T ss_pred             Eec-CCCCCc-hHHHHHHHhhCCCHH
Confidence            977 332222 123367888888887

1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit

Probab=87.49  E-value=2  Score=39.32  Aligned_cols=79  Identities=23%  Similarity=0.275  Sum_probs=50.9

Q ss_pred             CHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046           27 GPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA  106 (243)
Q Consensus        27 ~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  106 (243)
                      ......++..+++.++..+++-++||.+|.|       .++++....               -..+.+++..+|.|||++
T Consensus       168 G~~a~~~i~~al~~~~~~~~~dviii~RGGG-------s~eDL~~Fn---------------~e~~~rai~~~~~Pvis~  225 (432)
T TIGR00237       168 GEGAVQSIVESIELANTKNECDVLIVGRGGG-------SLEDLWSFN---------------DEKVARAIFLSKIPIISA  225 (432)
T ss_pred             CccHHHHHHHHHHHhhcCCCCCEEEEecCCC-------CHHHhhhcC---------------cHHHHHHHHcCCCCEEEe
Confidence            3456788888888888765566466667644       223322210               156788999999999997


Q ss_pred             ECcccchhHHH-HHHhccEEEEecC
Q 041046          107 VNGHAAAAGFT-LALSHDYVIMRRD  130 (243)
Q Consensus       107 v~G~a~G~G~~-la~~~D~~ia~~~  130 (243)
                      | ||-.-  +. .=+.+|.|..|+.
T Consensus       226 i-GHe~D--~ti~D~vAd~ra~TPt  247 (432)
T TIGR00237       226 V-GHETD--FTISDFVADLRAPTPS  247 (432)
T ss_pred             c-CcCCC--ccHHHHhhhccCCCcH
Confidence            7 22211  22 3367889988887

This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]

Probab=83.33  E-value=3.5  Score=37.57  Aligned_cols=77  Identities=27%  Similarity=0.334  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEE-ecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEE
Q 041046           28 PSAIDSILSAIAKAKAEATPGSALIT-TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA  106 (243)
Q Consensus        28 ~~~~~~l~~~l~~~~~d~~i~~vvvl-~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~  106 (243)
                      .....++.++++.+++..++. |+|+ +|       |+.++++....+               ..+.++++.++.|+|++
T Consensus       175 ~~A~~eIv~aI~~an~~~~~D-vlIVaRG-------GGSiEDLW~FNd---------------E~vaRAi~~s~iPvISA  231 (440)
T COG1570         175 EGAAEEIVEAIERANQRGDVD-VLIVARG-------GGSIEDLWAFND---------------EIVARAIAASRIPVISA  231 (440)
T ss_pred             CCcHHHHHHHHHHhhccCCCC-EEEEecC-------cchHHHHhccCh---------------HHHHHHHHhCCCCeEee
Confidence            345688999999999988888 4444 44       334444443211               45888999999999998


Q ss_pred             ECcccchhHHHHH-HhccEEEEecC
Q 041046          107 VNGHAAAAGFTLA-LSHDYVIMRRD  130 (243)
Q Consensus       107 v~G~a~G~G~~la-~~~D~~ia~~~  130 (243)
                      | ||-.  -+.|+ ..+|+|-.|+.
T Consensus       232 V-GHEt--D~tL~DfVAD~RApTPT  253 (440)
T COG1570         232 V-GHET--DFTLADFVADLRAPTPT  253 (440)
T ss_pred             c-ccCC--CccHHHhhhhccCCCch
Confidence            7 2211  12222 57788888876

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed

Probab=82.40  E-value=4.1  Score=37.25  Aligned_cols=78  Identities=23%  Similarity=0.241  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEE
Q 041046           28 PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAV  107 (243)
Q Consensus        28 ~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v  107 (243)
                      .....++.++|+.++... +-++||.+|.|       .++++....               -..+.+++..+|.|+|++|
T Consensus       175 ~~A~~~i~~al~~~~~~~-~Dviii~RGGG-------S~eDL~~Fn---------------~e~v~~ai~~~~~Pvis~I  231 (438)
T PRK00286        175 EGAAASIVAAIERANARG-EDVLIVARGGG-------SLEDLWAFN---------------DEAVARAIAASRIPVISAV  231 (438)
T ss_pred             ccHHHHHHHHHHHhcCCC-CCEEEEecCCC-------CHHHhhccC---------------cHHHHHHHHcCCCCEEEec
Confidence            445788888888888643 34467777754       223322210               1568889999999999976


Q ss_pred             CcccchhHHHHHHhccEEEEecC
Q 041046          108 NGHAAAAGFTLALSHDYVIMRRD  130 (243)
Q Consensus       108 ~G~a~G~G~~la~~~D~~ia~~~  130 (243)
                       ||-.-. .-.=+.+|.|..|++
T Consensus       232 -GHE~D~-tl~D~vAd~ra~TPt  252 (438)
T PRK00286        232 -GHETDF-TIADFVADLRAPTPT  252 (438)
T ss_pred             -cCCCCc-cHHHHhhhccCCChH
Confidence             222111 113367888888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	243
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	6e-25
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	4e-24
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 11251J, struct	3e-23
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	1e-22
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	2e-22
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	2e-21
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	3e-21
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	6e-21
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	9e-21
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	1e-20
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	1e-20
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	2e-20
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	2e-20
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	3e-20
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	2e-19
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	8e-19
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	2e-18
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	2e-18
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	3e-18
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	3e-18
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	4e-18
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	6e-18
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	1e-17
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	2e-17
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	4e-17
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	5e-17
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	5e-17
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	5e-17
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	7e-17
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	8e-17
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	9e-17
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	9e-17
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	4e-16
3t3w_A	279	Probable enoyl-COA hydratase; ssgcid, structural g	4e-16
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	5e-16
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	6e-16
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	1e-15
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	3e-15
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	3e-15
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	4e-15
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	1e-14
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	2e-14
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	3e-14
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	4e-14
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	7e-14
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	3e-13
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	4e-13
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	4e-13
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	7e-13
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	2e-12
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	2e-12
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	3e-12
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	1e-11
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	1e-11
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	1e-11
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	2e-11
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	2e-11
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	2e-11
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	2e-11
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	3e-11
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	7e-11
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	8e-11
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	1e-10
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	3e-10
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	4e-10
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	4e-10
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	5e-10
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	8e-10
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	1e-09
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	2e-09
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	4e-09

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV} Length = 232

 Score = 97.3 bits (243), Expect = 6e-25
 Identities = 49/211 (23%), Positives = 79/211 (37%), Gaps = 24/211 (11%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR-----FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           +      V  LTL        +        P  I +  +A+ +A+ +    + +I T   
Sbjct: 9   SYHLDDGVATLTL--------NNGKVNAISPDVIIAFNAALDQAEKDR---AIVIVTGQP 57

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
              S G DL           + E  + +V     +   M+  P P + A  GHA A G  
Sbjct: 58  GILSGGYDLK------VMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAF 111

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE 177
           L LS DY I       + ++EV IG T+      L R ++  +   R V+  A+    E 
Sbjct: 112 LLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLRKSAFNRSVIN-AEMFDPEG 170

Query: 178 ALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           A+  G +      EE    A + +A Q+   
Sbjct: 171 AMAAGFLDKVVSVEELQGAA-LAVAAQLKKI 200

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} Length = 233

 Score = 95.4 bits (238), Expect = 4e-24
 Identities = 48/211 (22%), Positives = 81/211 (38%), Gaps = 23/211 (10%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR-----FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           T      + V+ +                GP+   ++  AI  A  +     AL+   + 
Sbjct: 8   TYTHDDAIGVIRM--------DDGKVNVLGPTMQQALNEAIDAADRDNV--GALVIAGNH 57

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
           + FS G DL     +G    A +    M+     +   ++  P P V A  GHA A G  
Sbjct: 58  RVFSGGFDLKVL-TSGEAKPAID----MLRGGFELSYRLLSYPKPVVIACTGHAIAMGAF 112

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE 177
           L  S D+ +       +  +EV IG T+P     + + ++  +  ++   L AK   GE 
Sbjct: 113 LLCSGDHRVA-AHAYNVQANEVAIGMTIPYAAMEVLKLRLTPSAYQQAAGL-AKTFFGET 170

Query: 178 ALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           AL  G +      E  ++ A    A++ AG 
Sbjct: 171 ALAAGFIDEISLPEVVLSRA-EEAAREFAGL 200

>3lke_A Enoyl-COA hydratase; nysgrc, target 11251J, structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans} Length = 263

 Score = 93.8 bits (234), Expect = 3e-23
 Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 25/216 (11%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
             E   D   +TL                       S+L AI     E +  S ++ + H
Sbjct: 7   HTEIQNDALYITL--------DYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKH 58

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
             +FS+G  L       S   +  RL  ++      V  +   P  TVA +NG+A   GF
Sbjct: 59  RAYFSSGPRLEDLLICAS-DQSDVRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGF 117

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPD----YFTALFRAKVGSATARRDVLLRAKK 172
            + L+ D  I    +     +   +G + PD    YF  L R  +G      ++LL  K 
Sbjct: 118 NMMLACDRRIA-LRRAKFLENFHKMGIS-PDLGASYF--LPRI-IGYEQT-MNLLLEGKL 171

Query: 173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              EEALR+GL+Q   ++++++ E      K ++  
Sbjct: 172 FTSEEALRLGLIQEICENKQELQERVKNYLKAVSEG 207

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B* Length = 269

 Score = 92.2 bits (230), Expect = 1e-22
 Identities = 47/215 (21%), Positives = 83/215 (38%), Gaps = 26/215 (12%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
                  V  +T+                    A+  +  A+ +A+ + + G+ +IT + 
Sbjct: 6   GHRVEDGVAEITI--------KLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGA- 56

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
              F  G  L         AG R+        +  ++  ++ +  P +AA+NG AA  G 
Sbjct: 57  EDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGL 116

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPD----YFTALFRAKVGSATARRDVLLRAKK 172
            ++L+ D  I   D      +   IG    D    Y   L R  VG   A  +++L  + 
Sbjct: 117 GISLASDMAIC-ADSAKFVCAWHTIG-IGNDTATSYS--LARI-VGMRRA-MELMLTNRT 170

Query: 173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           +  EEA   GLV   Y  +E    A  ++A+++A 
Sbjct: 171 LYPEEAKDWGLVSRVYPKDEFREVA-WKVARELAA 204

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3 Length = 280

 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 8/177 (4%)

Query: 35  LSAIAKA--KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV 92
              I +A   A        + T +G ++S+G DL          G  E+        R  
Sbjct: 55  YHEIMRALKAASKDDSIITVLTGNGDYYSSGNDLT-NFTDIPPGGVEEKAKNNAVLLREF 113

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTA 151
           V   +D P P +A VNG A     TL    D V    D+   +     +G + P+   + 
Sbjct: 114 VGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYA-SDRATFHTPFSHLGQS-PEGCSSY 171

Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            F   +  A A  ++L+  KK+   EA   GLV   +       E      K  A  
Sbjct: 172 TFPKIMSPAKA-TEMLIFGKKLTAGEACAQGLVTEVFPDSTFQKEV-WTRLKAFAKL 226

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3 Length = 291

 Score = 89.7 bits (223), Expect = 2e-21
 Identities = 42/177 (23%), Positives = 67/177 (37%), Gaps = 8/177 (4%)

Query: 35  LSAIAKA--KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV 92
           +  I  A   A A     ++ ++ G  F  GLD         R       L MV++ +  
Sbjct: 53  IKEIVNALNSAAADDSKLVLFSAAGSVFCCGLDFG-YFVKHLRNNRNTASLEMVDTIKNF 111

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTA 151
           V   +    P V +VNG A   G ++    D V    +K          G   PD   + 
Sbjct: 112 VNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWA-NEKAWFQTPYTTFG-QSPDGCSSI 169

Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            F   +G A+A  ++L+  +K+   EA   GLV   + +     E  M   K++A  
Sbjct: 170 TFPKMMGKASA-NEMLIAGRKLTAREACAKGLVSQVFLTGTFTQEV-MIQIKELASY 224

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A Length = 261

 Score = 88.4 bits (220), Expect = 3e-21
 Identities = 44/177 (24%), Positives = 69/177 (38%), Gaps = 8/177 (4%)

Query: 35  LSAIAKA--KAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV 92
           +  +  A   A A     ++ ++ G  F  GLD  +     +    RE    M E+ R  
Sbjct: 35  MREVQSALSTAAADDSKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRE-STKMAEAIRNF 93

Query: 93  VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTA 151
           V   +    P + AVNG A   G ++    D V    +K          G   PD   T 
Sbjct: 94  VNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWA-NEKAWFQTPYTTFG-QSPDGCSTV 151

Query: 152 LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           +F   +G A+A  ++LL  +K+  +EA   GLV   +       E  M   K++A  
Sbjct: 152 MFPKIMGGASA-NEMLLSGRKLTAQEACGKGLVSQVFWPGTFTQEV-MVRIKELASC 206

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3 Length = 264

 Score = 87.2 bits (217), Expect = 9e-21
 Identities = 44/161 (27%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
           A++    G  FS G      +   +   A  R+       R +V   ++ P P VAAV  
Sbjct: 57  AVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVF---WEARDLVLGPLNFPRPVVAAVEK 113

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVL 167
            A  AG  LAL+ D  ++      L    + +G         L      VG A A +  L
Sbjct: 114 VAVGAGLALALAADIAVV-GKGTRLLDGHLRLG-VAAGDHAVLLWPLL-VGMAKA-KYHL 169

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           L  + + GEEA R+GLV  A + E+   +A + +A+++A  
Sbjct: 170 LLNEPLTGEEAERLGLVALAVEDEKVYEKA-LEVAERLAQG 209

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3} Length = 279

 Score = 87.3 bits (217), Expect = 1e-20
 Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
           AL+    G+ F +G D+       + +    RLL        VV A+ + P P +AA++G
Sbjct: 64  ALVLAGEGRGFCSGGDVD-EIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIAALHG 122

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDVLL 168
            AA AG  LAL+ D+ +              +G +  D     L    VG   A   +L+
Sbjct: 123 VAAGAGAVLALAADFRVA-DPSTRFAFLFTRVGLSGGDMGAAYLLPRVVGLGHA-TRLLM 180

Query: 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
               ++  EA R+GL+    +       A   LA+++A
Sbjct: 181 LGDTVRAPEAERIGLISELTEEGRADEAA-RTLARRLA 217

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium} Length = 255

 Score = 86.5 bits (215), Expect = 1e-20
 Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 31/213 (14%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
           ++E  G V  + L         R           ++ +   I  A+A+ +  + L+T + 
Sbjct: 9   SVEHDGAVLRIRL--------DRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGA- 59

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G+ F +G DL     AG+            ++   VV A+  LP P +A V+G A   G 
Sbjct: 60  GRAFCSGGDLTGGDTAGAA-----------DAANRVVRAITSLPKPVIAGVHGAAVGFGC 108

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDVLLRAKKIKG 175
           +LAL+ D V+         ++   +G   PD   +AL    +G A   R  +  A+KI  
Sbjct: 109 SLALACDLVVA-APASYFQLAFTRVGLM-PDGGASALLPLLIGRARTSRMAMT-AEKISA 165

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             A   G++     ++E  +     + + ++G 
Sbjct: 166 ATAFEWGMISHITSADEYESVL-TDVLRSVSGG 197

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A Length = 280

 Score = 86.3 bits (214), Expect = 2e-20
 Identities = 35/170 (20%), Positives = 55/170 (32%), Gaps = 9/170 (5%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSR------AGARERLLYMVESFRPVVAAMMDLPMPT 103
             I  S G+FFS+G D      A         +   + +   V     V  A +      
Sbjct: 56  FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVL 115

Query: 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATA 162
           +  +NG A      L    D V    DK  L     ++G  + +   T     K G+ T 
Sbjct: 116 ICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLG-LITEGGTTVSLPLKFGTNTT 174

Query: 163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAG 212
             + L+  K  K +     G +   ++     AEA      +    K  G
Sbjct: 175 -YECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKG 223

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} PDB: 3q1t_A Length = 272

 Score = 86.1 bits (214), Expect = 2e-20
 Identities = 43/161 (26%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
            ++    GK FS+G               R R++      R +V  +++L  P V+A+ G
Sbjct: 60  VVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIM---REARDLVLNLVNLDKPVVSAIRG 116

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVL 167
            A  AG  +AL  D  +       +      +G        A+      VG A A +  L
Sbjct: 117 PAVGAGLVVALLADISVA-SATAKIIDGHTKLG-VAAGDHAAICWPLL-VGMAKA-KYYL 172

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           L  + + GEEA R+GLV    D +E +  A  RLA+ +A  
Sbjct: 173 LTCETLSGEEAERIGLVSTCVDDDEVLPTA-TRLAENLAQG 212

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus} Length = 257

 Score = 85.7 bits (213), Expect = 3e-20
 Identities = 57/231 (24%), Positives = 97/231 (41%), Gaps = 34/231 (14%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
             E  G V  LTL        +R      F       +  A+ +A A+      +IT + 
Sbjct: 6   RYEVKGQVAWLTL--------NRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGA- 56

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G+ F  G DL             +    +   + P++ A+  L  P VAAVNG AA AG 
Sbjct: 57  GRAFCAGEDL------SGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAVNGAAAGAGM 110

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPD----YFTALFRAKVGSATARRDVLLRAKK 172
           +LAL+ D+ ++  +K     + + +G  +PD    Y+  L R  VG A A  ++ +  +K
Sbjct: 111 SLALACDFRLL-SEKASFAPAFIHVG-LVPDAGHLYY--LPRL-VGRAKA-LELAVLGEK 164

Query: 173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLY 223
           +  EEA  +GL        +   E   + A++++      +    I++ L 
Sbjct: 165 VTAEEAAALGLATKVIPLSDWEEEV-KQFAERLSAM--PTKAIGLIKRLLR 212

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum} Length = 256

 Score = 83.4 bits (207), Expect = 2e-19
 Identities = 59/213 (27%), Positives = 87/213 (40%), Gaps = 26/213 (12%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           ++    V  LTL        +R      F  +  D+   A+  A  +      L+T S G
Sbjct: 10  IDDDNRVRTLTL--------NRPEALNAFNEALYDATAQALLDAADDPQVAVVLLTGS-G 60

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
           + FS G DLA  QA  +     E        FR ++ A+   P P + AVNG     G T
Sbjct: 61  RGFSAGTDLAEMQARITDPNFSEGKFG----FRGLIKALAGFPKPLICAVNGLGVGIGAT 116

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVLLRAKKIKG 175
           +    D   M      L      +G   P+  ++    +  VG   A   +L+ ++ I  
Sbjct: 117 ILGYADLAFM-SSTARLKCPFTSLG-VAPEAASSYLLPQL-VGRQNA-AWLLMSSEWIDA 172

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           EEALRMGLV      EE + EA  R A+ +A +
Sbjct: 173 EEALRMGLVWRICSPEELLPEA-RRHAEILAAK 204

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M} Length = 298

 Score = 82.3 bits (204), Expect = 8e-19
 Identities = 34/164 (20%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 50  ALITTSHGKFFSNGLDL---AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAA 106
            ++ T  G+ F  G  L     A          +               +  L  P +AA
Sbjct: 77  VIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLRKPVIAA 136

Query: 107 VNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARR 164
           +NG     G T AL  D                  G  + ++  +    R     A A  
Sbjct: 137 INGPCVGIGLTQALMCDVRFA-AAGAKFAAVFARRG-LIAEFGISWILPRL-TSWAVA-L 192

Query: 165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           D+LL  +    EEA ++GLV+     E+ +  A +  A+ +A  
Sbjct: 193 DLLLSGRTFLAEEAAQLGLVKEVVTPEQLMPRA-LEYAEDIARY 235

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A Length = 334

 Score = 81.8 bits (202), Expect = 2e-18
 Identities = 40/195 (20%), Positives = 73/195 (37%), Gaps = 14/195 (7%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALIT------TSHGKFFSNGLDLA------WAQAAG 73
           F P  +D +   +  A+     G  L+T         G  F +G D        +  A+G
Sbjct: 81  FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASG 140

Query: 74  SRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGV 133
             A   +           V   +  +P   +  VNG AA  G +L +  D  +  R+   
Sbjct: 141 DTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYAR 200

Query: 134 LYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQ 193
              ++ D+G+    Y +A    +VG   A R++    +    E+  +MG V A  +  E 
Sbjct: 201 FKQTDADVGSFDGGYGSAYLARQVGQKFA-REIFFLGRTYTAEQMHQMGAVNAVAEHAEL 259

Query: 194 VAEASMRLAKQMAGR 208
                ++ A ++  +
Sbjct: 260 ETVG-LQWAAEINAK 273

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis} Length = 267

 Score = 80.4 bits (199), Expect = 2e-18
 Identities = 32/211 (15%), Positives = 59/211 (27%), Gaps = 28/211 (13%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           I+  L  + + +      + ++     + F  G D         R     +     E   
Sbjct: 36  IEECLQVLNQCETSTV--TVVVLEGLPEVFCFGADFQEIYQEMKRG---RKQASSQEPLY 90

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
            +   +   P  T++ V G   A G     + D  I         +SE+  G   P    
Sbjct: 91  DLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIA-DQTASFSLSELLFG-LYPACVL 148

Query: 151 ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEA-----------SM 199
                ++G   A   + L  K I  +EA   GL+ A     + +               +
Sbjct: 149 PFLIRRIGRQKAHY-MTLMTKPISVQEASEWGLIDAFDAESDVLLRKHLLRLRRLNKKGI 207

Query: 200 RLAKQM---------AGRKWAGEVYAEIRKS 221
              KQ            +  A     ++   
Sbjct: 208 AHYKQFMSSLDHQVSRAKATALTANQDMFSD 238

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi} Length = 263

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 6/179 (3%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAW-AQAAGSRAGARERLLYMVESF 89
           I ++  A+ +A  +      L+    G+ F  G DL    +        R  +  + E+ 
Sbjct: 35  IAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEAC 93

Query: 90  RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF 149
             ++  +   P PT+A V G A AAG  L  + D            +  V  G       
Sbjct: 94  SALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYA-SPAARFCLPGVQNGGFCTTPA 152

Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            A+ R  +G      ++ L       + AL  GL+      E  +A     LA  +A R
Sbjct: 153 VAVSRV-IGRRAV-TEMALTGATYDADWALAAGLINRIL-PEAALATHVADLAGALAAR 208

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp} Length = 276

 Score = 80.3 bits (199), Expect = 3e-18
 Identities = 42/215 (19%), Positives = 77/215 (35%), Gaps = 31/215 (14%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
            +   G + ++TL        +R              +     +   + T  +A+IT + 
Sbjct: 31  DVRADGALRIITL--------NRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGA- 81

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G+ FS G D  + +   + A  R + +      R +V  M    +P VAAVNG A   G 
Sbjct: 82  GRAFSAGGDFGYLKELSADADLRAKTI---RDGREIVLGMARCRIPVVAAVNGPAVGLGC 138

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPD----YFTALFRAKVGSATARRDVLLRAKK 172
           +L    D V +  +   L    V +G  +               +    A ++  L   +
Sbjct: 139 SLVALSDIVYI-AENAYLADPHVQVG-LVAADGGPLT--WPLH-ISLLLA-KEYALTGTR 192

Query: 173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           I  + A+ +GL     D        ++  AK++  
Sbjct: 193 ISAQRAVELGLANHVAD---DPVAEAIACAKKILE 224

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A Length = 275

 Score = 79.9 bits (198), Expect = 4e-18
 Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 50  ALITTSHGKFFSNGLDLA------WAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT 103
           A++ +  GK F++G+DL               A     L  ++  ++     +   P P 
Sbjct: 51  AVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEKCPKPV 110

Query: 104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--LFRAKVGSAT 161
           +AA++G     G  L  + D     +D     + EVD+G    D  T   L +  +G+ +
Sbjct: 111 IAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVG-LAADVGTLQRLPKV-IGNRS 167

Query: 162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              ++   A+K+  +EAL  GLV   +  ++ +  A+  LA  ++ +
Sbjct: 168 LVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSK 214

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii} Length = 266

 Score = 79.5 bits (197), Expect = 6e-18
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 12/161 (7%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
            ++       F+ G D+           A             ++ +   L  P + AV G
Sbjct: 52  VVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQ---VPPFVLLKSAARLSKPLIIAVKG 108

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVL 167
            A   G T+ L  D V    +  +  +  V +G   P+   +    +   G   A  ++L
Sbjct: 109 VAIGIGVTILLQADLVFA-DNTALFQIPFVSLG-LSPEGGASQLLVKQ-AGYHKA-AELL 164

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             AKK   E AL+ GLV    +     A+A    A+ +   
Sbjct: 165 FTAKKFNAETALQAGLVNEIVEDAYATAQA---TAQHLTAL 202

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis} Length = 254

 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 39/212 (18%), Positives = 71/212 (33%), Gaps = 27/212 (12%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
            +E+    +  TL         R           +++++  +  A  E  P   L+    
Sbjct: 10  AIERRPAAWTFTL--------SRPEKRNALSAELVEALIDGVDAAHREQVP--LLVFAGA 59

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G+ FS G D    +   S      R++ +    +     +   P  T+A  +G    AG 
Sbjct: 60  GRNFSAGFDFTDYETQ-SEGDLLLRMVRIEMLLQ----RVAGSPSLTLALAHGRNFGAGV 114

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGE 176
            L  +  +      +    M  +  G  +    T  FR  VG+  A   +L  A+    +
Sbjct: 115 DLFAACKWRYC-TPEAGFRMPGLKFG-LVLG--TRRFRDIVGADQA-LSILGSARAFDAD 169

Query: 177 EALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           EA R+G V+      +  A      A+     
Sbjct: 170 EARRIGFVRDCAAQAQWPALI-DAAAEAATAL 200

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans} Length = 556

 Score = 80.0 bits (197), Expect = 2e-17
 Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 16/219 (7%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATP-GSALIT 53
            L  +G V  L +  + D                     +  AI + + E     + ++T
Sbjct: 24  KLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVRTVVLT 83

Query: 54  TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
           +   + F +G ++       + A       +  E+   +  +     +  +AAVNG  A 
Sbjct: 84  SLKDRVFCSGANIF-MLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAG 142

Query: 114 AGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDY--FTALFRA-KVGSATARRDVLLR 169
            G+ LAL+ D + +  D    + + EV +   LP     T +    KV    A       
Sbjct: 143 GGYELALACDEIYLVDDRSSSVSLPEVPLLGVLPGTGGLTRVTDKRKVRHDRA-DIFCTV 201

Query: 170 AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            + ++GE A    LV       +         A ++A +
Sbjct: 202 VEGVRGERAKAWRLVDEVVKPNQFDQAI-QARALELAAQ 239

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} Length = 267

 Score = 77.2 bits (191), Expect = 4e-17
 Identities = 37/181 (20%), Positives = 72/181 (39%), Gaps = 7/181 (3%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
              + +  +   +  A ++      ++    G  F  G DL+ A + GS + A +  +  
Sbjct: 35  LSTALVSQLHQGLRDASSDPAV-RVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVER 93

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL 145
                 ++ A+++  +P +AA++GH  A GF L  + D  +         ++E  IG   
Sbjct: 94  AREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR-SSFALTEARIG-VA 151

Query: 146 PDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM 205
           P   +     K+ +  A R   L  +K     A  +GL+  A    E +  A  +L   +
Sbjct: 152 PAIISLTLLPKLSARAAAR-YYLTGEKFDARRAEEIGLITMA---AEDLDAAIDQLVTDV 207

Query: 206 A 206
            
Sbjct: 208 G 208

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D Length = 263

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 27/161 (16%), Positives = 61/161 (37%), Gaps = 11/161 (6%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
            +I T  G  +   +D        +     +         + V+  ++D+ +P ++AVNG
Sbjct: 71  VVILTGSGDAWMAEIDFPSLGDVTNPREWDK----TYWEGKKVLQNLLDIEVPVISAVNG 126

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVL 167
            A        L+ D ++   +     M  ++ G  +P     +    A +G     R  L
Sbjct: 127 AALLHS-EYILTTDIILASENTVFQDMPHLNAG-IVPGDGVHILWPLA-LGLYRG-RYFL 182

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              +K+  ++A  + +V       + +  A   +A+ +A +
Sbjct: 183 FTQEKLTAQQAYELNVVHEVLPQSKLMERA-WEIARTLAKQ 222

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus} Length = 290

 Score = 77.3 bits (191), Expect = 5e-17
 Identities = 43/184 (23%), Positives = 79/184 (42%), Gaps = 13/184 (7%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM--VES 88
           +      +     +    + +IT + GK F +G D   A       G  +  + +  +E 
Sbjct: 53  MLPFKQMLVDISHDNDVRAVVITGA-GKGFCSGADQKSAGPIPHIGGLTQPTIALRSMEL 111

Query: 89  FRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD- 147
              V+  +  +  P +AA+NG A   G  LAL+ D  +          + ++ G T  + 
Sbjct: 112 LDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVA-SQDAYFRAAGINNGLTASEL 170

Query: 148 ---YFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204
              Y   L RA +G++ A  D++L  + +  +EA R+GLV     SE  + E    + ++
Sbjct: 171 GLSYL--LPRA-IGTSRA-SDIMLTGRDVDADEAERIGLVSRKVASESLLEEC-YAIGER 225

Query: 205 MAGR 208
           +AG 
Sbjct: 226 IAGF 229

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A Length = 257

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 27/213 (12%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           LE+ G V ++T+        H       +  +A D +         +      ++T + G
Sbjct: 20  LERDGGVLLVTV--------HTEGKSLVWTSTAHDELAYCFHDIACDRENKVVILTGT-G 70

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
             F N +D                   ++   + ++  ++ + +P +AAVNG        
Sbjct: 71  PSFCNEIDFTSFNLGTPHDWDE-----IIFEGQRLLNNLLSIEVPVIAAVNG-PVTNAPE 124

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVLLRAKKIKG 175
           + +  D V+               G  +P     +      +GS    R  LL  +++  
Sbjct: 125 IPVMSDIVLAAESATFQDGPHFPSG-IVPGDGAHVVWPHV-LGSNRG-RYFLLTGQELDA 181

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             AL  G V      +E +  A   LA+ +A +
Sbjct: 182 RTALDYGAVNEVLSEQELLPRA-WELARGIAEK 213

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A Length = 243

 Score = 76.0 bits (188), Expect = 7e-17
 Identities = 37/212 (17%), Positives = 76/212 (35%), Gaps = 32/212 (15%)

Query: 5   EKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHGK 58
           E    V  +T+                F PS ++ +    +           ++T   G 
Sbjct: 8   ELGNGVVQITM--------KDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGY-GN 58

Query: 59  FFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTL 118
           +FS+G    +             L             ++D  +P +AA+ GH+   G  L
Sbjct: 59  YFSSGASKEFLIRKTRGEVEVLDL----------SGLILDCEIPIIAAMQGHSFGGGLLL 108

Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--LFRAKVGSATARRDVLLRAKKIKGE 176
            L  D+V+    + V   + +  G   P   T+  L    +GS  A ++++   +  +G+
Sbjct: 109 GLYADFVVF-SQESVYATNFMKYG-FTPVGATSLILREK-LGSELA-QEMIYTGENYRGK 164

Query: 177 EALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           E    G+       ++ +  A  +L +++A  
Sbjct: 165 ELAERGIPFPVVSRQDVLNYA-QQLGQKIAKS 195

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} Length = 265

 Score = 76.5 bits (189), Expect = 8e-17
 Identities = 52/212 (24%), Positives = 82/212 (38%), Gaps = 28/212 (13%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSH 56
             E    V VLTL        H       F       + +A  +   +      ++T + 
Sbjct: 10  HEEIRDGVAVLTL--------HGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGA- 60

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
              F +G  ++ A    +     +       S  PV  A  +L  P +AAVNGHA   G 
Sbjct: 61  PPAFCSGAQISAAAETFAAPRNPDF------SASPVQPAAFELRTPVIAAVNGHAIGIGM 114

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALF--RAKVGSATARRDVLLRAKKIK 174
           TLAL  D  I+  ++G   + +V  G   PD        R  VG+A A  ++LL      
Sbjct: 115 TLALHADIRIL-AEEGRYAIPQVRFG-VAPDALAHWTLPRL-VGTAVA-AELLLTGASFS 170

Query: 175 GEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
            + A+  GL      + + +  A +R+A  +A
Sbjct: 171 AQRAVETGLANRCLPAGKVLGAA-LRMAHDIA 201

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A Length = 260

 Score = 76.0 bits (188), Expect = 9e-17
 Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 10/180 (5%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           +  ++ ++ K + + +    ++T+     FS GLDL       S A        + E + 
Sbjct: 33  LTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLT-EMCGRSPAHYAGYWKAVQELWL 91

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVDIGATLPDYF 149
                +    +  V+A+NG   A G  +AL+ DY I+  + +  + ++E  +G   P + 
Sbjct: 92  ----RLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPRYCIGLNETQLGIIAPFWL 147

Query: 150 TA-LFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              L    +G   A    L         EAL++G+V      E+  + A +    Q    
Sbjct: 148 KDTLENT-IGHRAA-ERALQLGLLFPPAEALQVGIVDQVVPEEQVQSTA-LSAIAQWMAI 204

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A* Length = 250

 Score = 76.0 bits (188), Expect = 9e-17
 Identities = 43/214 (20%), Positives = 80/214 (37%), Gaps = 28/214 (13%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITTS 55
            E   +V V+TL            P+           S+  A+A+A A+ +  + ++   
Sbjct: 4   EENSDEVRVITL--------DH--PNKHNPFSRTLETSVKDALARANADDSVRAVVVYGG 53

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
             + FS G D    +         E     ++    +  A++++  PT+AAV+G+A   G
Sbjct: 54  AERSFSAGGDFNEVKQLSRSEDIEE----WIDRVIDLYQAVLNVNKPTIAAVDGYAIGMG 109

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-FTALFRAKVGSATARRDVLLRAKKIK 174
           F  AL  D  +M        M E+  G          L     G +T  ++++ + + + 
Sbjct: 110 FQFALMFDQRLM-ASTANFVMPELKHG-IGCSVGAAILGFT-HGFSTM-QEIIYQCQSLD 165

Query: 175 GEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
               +   LV    +S   +  A +  A  MA  
Sbjct: 166 APRCVDYRLVNQVVESSALLDAA-ITQAHVMASY 198

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis} Length = 287

 Score = 74.9 bits (185), Expect = 4e-16
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 18/186 (9%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           +  + + +     +++    + +++  +FF   +D+   +   +           V  F+
Sbjct: 37  MRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQ 96

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT------ 144
            V   +   P  T+  + G A   G     + D      +   L   E  +G        
Sbjct: 97  AVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAETAGLGQIEALMGIIPGGGGT 156

Query: 145 --LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
             L           VG   A  +V+L A     E A   G +  A  ++E       R+A
Sbjct: 157 QYLR-------GR-VGRNRA-LEVVLTADLFDAETAASYGWINRALPADELDEYV-DRVA 206

Query: 203 KQMAGR 208
           + +A  
Sbjct: 207 RNIAAL 212

>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A Length = 279

 Score = 74.6 bits (184), Expect = 4e-16
 Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
            ++  ++GK FS G DL        +        +    +        ++P P++AAV G
Sbjct: 67  VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSIAAVQG 126

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR 169
              + G  L    D +I   +  +     V +     +Y        +G   A +++L  
Sbjct: 127 RCISGGLLLCWPCDLIIA-AEDALFSDPVVLMDIGGVEYH-GHTWE-LGPRKA-KEILFT 182

Query: 170 AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            + +  EE  + G+V      +   AE    LA ++A  
Sbjct: 183 GRAMTAEEVAQTGMVNRVVPRDRLDAET-RALAGEIAKM 220

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus} Length = 273

 Score = 74.1 bits (183), Expect = 5e-16
 Identities = 37/184 (20%), Positives = 72/184 (39%), Gaps = 9/184 (4%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
           F P  +  ++ A ++A+ +      ++T      F +G D       G     +   L +
Sbjct: 37  FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNV 96

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL 145
           ++  R     +  +P P +A V G+A   G  L +  D  I   D  +   +   +G + 
Sbjct: 97  LDLQR----LIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAA-DNAIFGQTGPKVG-SF 150

Query: 146 PDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204
              + +      VG   AR ++    ++   +EAL MGLV      E+   E  ++  K+
Sbjct: 151 DAGYGSGYLARIVGHKKAR-EIWYLCRQYNAQEALDMGLVNTVVPLEKVEDET-VQWCKE 208

Query: 205 MAGR 208
           +   
Sbjct: 209 IMKH 212

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A Length = 333

 Score = 74.8 bits (184), Expect = 6e-16
 Identities = 39/183 (21%), Positives = 62/183 (33%), Gaps = 31/183 (16%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARE-------------------------RLLY 84
            ++ +  G+ F  G DL+      S AG                                
Sbjct: 82  VILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQALNHLPDEPWDPMVDYQ 141

Query: 85  MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT 144
           M+  F    A++M    PTV  ++G+  A G  +AL  D VI   D   +    + +   
Sbjct: 142 MMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD-AKIGYPPMRVWGV 200

Query: 145 LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204
                       +G   A+R +L     I G +A   GL   A D  +  A    RL ++
Sbjct: 201 PAAGL--WAHR-LGDQRAKR-LLFTGDCITGAQAAEWGLAVEAPDPADLDART-ERLVER 255

Query: 205 MAG 207
           +A 
Sbjct: 256 IAA 258

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} Length = 268

 Score = 73.3 bits (181), Expect = 1e-15
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 9/178 (5%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           +  +   +  A  +      ++  ++GK FS G DL W Q+        E  L       
Sbjct: 33  LTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMA--NFTEEENLEDSLVLG 89

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT 150
            ++ ++   P PT+A V G A   G  LA + D  I          SEV +G  +P   +
Sbjct: 90  NLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIA-STSARFCFSEVKLG-LIPAVIS 147

Query: 151 -ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
             + RA +G   A+  + + A+      A  + LVQ     +  +    ++ A Q++ 
Sbjct: 148 PYVVRA-IGERAAKM-LFMSAEVFDATRAYSLNLVQHCVPDDTLLEFT-LKYASQISN 202

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis} Length = 264

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 37/213 (17%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           + +   V  + L         R           ++ +  AI KA   +    A++ T  G
Sbjct: 25  ITQAEAVLTIEL--------QRPERRNALNSQLVEELTQAIRKAGDGSA--RAIVLTGQG 74

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
             F  G DL+        A A +      +    +  AM   PMP V A+NG A  AG  
Sbjct: 75  TAFCAGADLS------GDAFAAD----YPDRLIELHKAMDASPMPVVGAINGPAIGAGLQ 124

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--LFRAKVGSATARRDVLLRAKKIKG 175
           LA+  D  ++              G    D ++   L    VG   A R +LL A+K+  
Sbjct: 125 LAMQCDLRVV-APDAFFQFPTSKYG-LALDNWSIRRLSSL-VGHGRA-RAMLLSAEKLTA 180

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           E AL  G+        +     +   A ++A  
Sbjct: 181 EIALHTGMANRIGTLAD-----AQAWAAEIARL 208

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis} Length = 286

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 38/179 (21%), Positives = 70/179 (39%), Gaps = 11/179 (6%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           + ++  A      + +   A++  + GK F  G DL   +A  SR    +      +   
Sbjct: 55  LAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVML 113

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-F 149
               A+  LP P +A V+G A AAG  L    D  +         +S +++G        
Sbjct: 114 ----AIQRLPAPVIARVHGIATAAGCQLVAMCDLAVA-TRDARFAVSGINVG-LFCSTPG 167

Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            AL R  VG   A  ++L+  + +  ++A  +GLV      +    E    +  ++  +
Sbjct: 168 VALSRN-VGRKAA-FEMLVTGEFVSADDAKGLGLVNRVVAPKALDDEI-EAMVSKIVAK 223

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3 Length = 253

 Score = 71.4 bits (176), Expect = 4e-15
 Identities = 56/160 (35%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 50  ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNG 109
           A++ T  GK FS G DLA+ +      GA E   +   S   +   +   P PTVAAVNG
Sbjct: 46  AVVLTGRGKAFSAGADLAFLERVTE-LGAEENYRH-SLSLMRLFHRVYTYPKPTVAAVNG 103

Query: 110 HAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGSATARRDVLL 168
            A A G  LAL+ D V+M  ++  L  +EV IG  +    +  L RA VG   A +D+LL
Sbjct: 104 PAVAGGAGLALACDLVVM-DEEARLGYTEVKIG-FVAALVSVILVRA-VGEKAA-KDLLL 159

Query: 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             + ++  EA  +GLV       + + EA   LA+++A  
Sbjct: 160 TGRLVEAREAKALGLVNRIAPPGKALEEA-KALAEEVAKN 198

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis} Length = 289

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 37/186 (19%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           +  +++ + +      P   +  ++   FF   +D+       +   A+        S  
Sbjct: 36  VRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMT-KVPEYTAEAAKA-GGPGDASLG 93

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT------ 144
            +   +  LP  T+A + G A  AG    L+ D     R+  +L   EV IGA       
Sbjct: 94  MLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGAPPGAGAI 153

Query: 145 --LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
             L        R  +G   A  + +L +     + A R G V  A    E        +A
Sbjct: 154 QHLT-------RL-LGRGRA-LEAVLTSSDFDADLAERYGWVNRAVPDAELDEFV-AGIA 203

Query: 203 KQMAGR 208
            +M+G 
Sbjct: 204 ARMSGF 209

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus} Length = 265

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 40/221 (18%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA-------IDSILSAIAKAKAEATPGSALITTS 55
           T+ K   +  + L        H     +            +AI   + +      ++ + 
Sbjct: 12  TVFKEDGIAEIHL--------HI--NKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSD 61

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
             KFFS G D+     +       +            +  +   P   +A + GH    G
Sbjct: 62  VPKFFSAGADIN-FLRSADPRFKTQ----FCLFCNETLDKIARSPQVYIACLEGHTVGGG 116

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
             +AL+ D   M  + G + + EV +G          L        R  +G + A  D+ 
Sbjct: 117 LEMALACDLRFMGDEAGKIGLPEVSLGVLAGTGGTQRLA-------RL-IGYSRA-LDMN 167

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           +  + I  +EAL +GLV   +   E         A+++A  
Sbjct: 168 ITGETITPQEALEIGLVNRVFPQAETRERT-REYARKLANS 207

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 3h02_A 2iex_A Length = 289

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 39/185 (21%), Positives = 74/185 (40%), Gaps = 10/185 (5%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAW-AQAAGSRAGARERLLY 84
           F P  +  ++ A+A A+ +   G  ++T +  K F +G D        G +  +    L 
Sbjct: 52  FRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLN 111

Query: 85  MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT 144
           +++  R     +   P P VA V G++   G  L +  D  I   D  +   +   +G +
Sbjct: 112 VLDFQR----QIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAA-DNAIFGQTGPKVG-S 165

Query: 145 LPDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAK 203
               +  +     VG   AR ++    ++   ++AL MGLV       +   E  +R  +
Sbjct: 166 FDGGWGASYMARIVGQKKAR-EIWFLCRQYDAKQALDMGLVNTVVPLADLEKET-VRWCR 223

Query: 204 QMAGR 208
           +M   
Sbjct: 224 EMLQN 228

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C* Length = 276

 Score = 69.2 bits (170), Expect = 4e-14
 Identities = 38/213 (17%), Positives = 78/213 (36%), Gaps = 22/213 (10%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTSHG 57
           +E    +  + L        +R        P+    ++  +   + +   G  L+ T  G
Sbjct: 13  VEIEDGIAFVIL--------NRPEKRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAG 63

Query: 58  KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFT 117
           + ++ G+DL              +     E+ +     +     PT+A VNG     GF+
Sbjct: 64  EAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFS 123

Query: 118 LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--LFRAKVGSATARRDVLLRAKKIKG 175
             ++ D  I   D+    +SE++ G   P    +  +    VG   +    ++  K   G
Sbjct: 124 PLVACDLAIC-ADEATFGLSEINWG-IPPGNLVSKAMADT-VGHRQS-LMYIMTGKTFGG 179

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           ++A  MGLV  +    +      + LA+ +  +
Sbjct: 180 QKAAEMGLVNESVPLAQLREVT-IELARNLLEK 211

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A Length = 305

 Score = 68.6 bits (168), Expect = 7e-14
 Identities = 45/221 (20%), Positives = 77/221 (34%), Gaps = 29/221 (13%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGS----ALITTSH 56
             E   DV+ + +     ++  R  F    +D I                    ++  S 
Sbjct: 35  IEEPQRDVYWIHMHADLAINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASD 94

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAM---MDLPMPTVAAVNGHAAA 113
              F+ G DLA       R G R RLL   +     V A    +     ++A V G+A  
Sbjct: 95  SDVFNLGGDLA-LFCQLIREGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALG 153

Query: 114 AGFTLALSHDYVIMRRDKGVLYMSEVDI------GAT--LPDYFTALFRAKVGSATARRD 165
            GF  ALS   +I   +  ++ + EV        GA   +        +  + +  A + 
Sbjct: 154 GGFEAALSCHTIIA-EEGVMMGLPEVLFDLFPGMGAYSFMC-------QR-ISAHLA-QK 203

Query: 166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA 206
           ++L       E+ L MGLV       + VA    ++ ++  
Sbjct: 204 IMLEGNLYSAEQLLGMGLVDRVVPRGQGVAAV-EQVIRESK 243

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP} Length = 275

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 14/189 (7%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALIT-----TSHGKFFSNGLDLAWAQAAGSRAGARE 80
           F P  +  +  A   A+ +   G  L+T     +     F +G D +     G       
Sbjct: 34  FRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGT 93

Query: 81  RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD 140
             L +++  R     +  +P   +A V G+A   G  L L  D  I   D  +   +   
Sbjct: 94  PRLNVLDLQR----LIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAA-DNAIFGQTGPK 148

Query: 141 IGATLPDYFTALFRAK-VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM 199
           +G +    F + + A+ VG   AR ++    ++   +EA RMG+V      +    E  +
Sbjct: 149 VG-SFDGGFGSSYLARIVGQKKAR-EIWYLCRQYSAQEAERMGMVNTVVPVDRLEEEG-I 205

Query: 200 RLAKQMAGR 208
           + AK++  +
Sbjct: 206 QWAKEILSK 214

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* Length = 715

 Score = 67.3 bits (165), Expect = 4e-13
 Identities = 43/186 (23%), Positives = 79/186 (42%), Gaps = 8/186 (4%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYM 85
           F    ++ +  A+   KA+A+    +I +S    F  G D+               L+  
Sbjct: 32  FNRLTLNELRQAVDAIKADASV-KGVIVSSGKDVFIVGADITEFVEN--FKLPDAELIAG 88

Query: 86  VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL 145
                 + +   DL +PTVAA+NG A   G  + L+ D+ +M  D   + + EV +G   
Sbjct: 89  NLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVM-ADSAKIGLPEVKLG-IY 146

Query: 146 PDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ 204
           P +  T      +G   A  + +   K+ + E+AL++  V A   +++  A A + L K+
Sbjct: 147 PGFGGTVRLPRLIGVDNA-VEWIASGKENRAEDALKVSAVDAVVTADKLGAAA-LDLIKR 204

Query: 205 MAGRKW 210
               + 
Sbjct: 205 AISGEL 210

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus} Length = 265

 Score = 66.0 bits (162), Expect = 4e-13
 Identities = 56/214 (26%), Positives = 81/214 (37%), Gaps = 28/214 (13%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSAI----DSILSAIAKA--KAEATPG-SALITTS 55
            + + G V V+ L        +R  P+       ++L  +A A  + E      A +   
Sbjct: 12  RIRRDGYVLVIGL--------NR--PAKRNAFDKTMLEELALALGEYETDTDLRAAVLYG 61

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
            G  F+ GLDLA + AA  + GA            P       L  P + AV+G     G
Sbjct: 62  EGPLFTAGLDLA-SVAAEIQGGASL---TPEGGINPWQVDGRQLSKPLLVAVHGKVLTLG 117

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDVLLRAKKI 173
             LAL+ D VI   +       EV+ G   P    A  R     G   A    +L A   
Sbjct: 118 IELALAADIVIA-DETATFAQLEVNRG-IYPF-GGATIRFPRTAGWGNA-MRWMLTADTF 173

Query: 174 KGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
              EA R+G+VQ      E V  A + +A+ +A 
Sbjct: 174 DAVEAHRIGIVQEIVPVGEHVDTA-IAIAQTIAR 206

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Length = 725

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 12/209 (5%)

Query: 3   TLEKHGD-VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFS 61
            +E  GD V V+TL        +      + ++ S   +A +      A++ T     FS
Sbjct: 10  VMEVGGDGVAVITLINPP---VNSLSFDVLYNLKSNYEEALSRNDV-KAIVITGAKGRFS 65

Query: 62  NGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALS 121
            G D++       + G  +       S   +   +     P+VAA++G A   G  LA++
Sbjct: 66  GGFDISGFGEM--QKGNVKEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMA 123

Query: 122 HDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALR 180
               I       L + E+ +G  +P +  T      VG   A  +++L +K +K EE   
Sbjct: 124 CHARIS-APAAQLGLPELQLG-VIPGFGGTQRLPRLVGLTKA-LEMILTSKPVKAEEGHS 180

Query: 181 MGLVQAAYDSEEQVAEASMRLAKQMAGRK 209
           +GL+ A     E V  A  R A  + GR+
Sbjct: 181 LGLIDAVVPPAELVTTA-RRWALDIVGRR 208

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis} Length = 265

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 24/186 (12%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           ++ + + + +   EA     ++T +  K F  G DL   +A  +    R      V   R
Sbjct: 38  LEELQNILTQINEEANTRVVILTGAGEKAFCAGADLK-ERAGMNEEQVRH----AVSMIR 92

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT------ 144
             +  +  LP P +AA+NG A   G  L+L+ D+ I   +   L ++E  +         
Sbjct: 93  TTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIA-AESASLGLTETTLAIIPGAGGT 151

Query: 145 --LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
             LP       R  +G   A ++++   ++I  +EA   GLV+          +A + +A
Sbjct: 152 QRLP-------RL-IGVGRA-KELIYTGRRISAQEAKEYGLVEFVVPVHLLEEKA-IEIA 201

Query: 203 KQMAGR 208
           +++A  
Sbjct: 202 EKIASN 207

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris} Length = 275

 Score = 63.7 bits (156), Expect = 2e-12
 Identities = 38/220 (17%), Positives = 68/220 (30%), Gaps = 39/220 (17%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSAI----DSILSAIAKAKAEATPG-SALITTSH 56
             ++  G V  + L        +R  P       D +++A+     +      A++    
Sbjct: 18  LVVDTVGPVLTIGL--------NR--PKKRNALNDGLMAALKDCLTDIPDQIRAVVIHGI 67

Query: 57  GKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGF 116
           G  FS GLDL+                     F      +    +P +AA+ G     G 
Sbjct: 68  GDHFSAGLDLS-ELRERDATEGLVHSQTWHRVFD----KIQYCRVPVIAALKGAVIGGGL 122

Query: 117 TLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVLL 168
            LA +    +         + E   G          LP       R  +G A    D++L
Sbjct: 123 ELACAAHIRVA-EASAYYALPEGSRGIFVGGGGSVRLP-------RL-IGVARM-ADMML 172

Query: 169 RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             +     E +  G  Q   ++     +A + L  ++A  
Sbjct: 173 TGRVYSAAEGVVHGFSQYLIENGSAYDKA-LELGNRVAQN 211

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa} Length = 258

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 53/220 (24%), Positives = 80/220 (36%), Gaps = 40/220 (18%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPS---AIDS-ILSAIAKA--KAEATPG-SALITTS 55
           T E+ G +F++ L         R       A DS +L+ +A A  + E +      +  +
Sbjct: 15  TREQRGHLFLIGL--------DR--AGKRNAFDSAMLADLALAMGEYERSEESRCAVLFA 64

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
           HG+ F+ GLDL       +   A     Y      P          P V AV G    AG
Sbjct: 65  HGEHFTAGLDLM----ELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAG 120

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
             L L+ D  +           EV  G           P       RA  G   A    +
Sbjct: 121 IELMLNADIAVA-ARGTRFAHLEVLRGIPPLGGSTVRFP-------RA-AGWTDA-MRYI 170

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           L   +   +EALRM L+    +  E++A A +  A+++A 
Sbjct: 171 LTGDEFDADEALRMRLLTEVVEPGEELARA-LEYAERIAR 209

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A* Length = 261

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 35/222 (15%), Positives = 71/222 (31%), Gaps = 45/222 (20%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITTS 55
           +     V V+          +              ID ++ A++           ++   
Sbjct: 8   VVTINKVAVIEF--------NY--GRKLNALSKVFIDDLMQALSDLNRPEI-RCIILRAP 56

Query: 56  HG-KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
            G K FS G D+                L   +  R +   +   P P ++ V G     
Sbjct: 57  SGSKVFSAGHDIH------ELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGG 110

Query: 115 GFTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDV 166
            F + +S D +I         M+ V++G          L        R   G     +++
Sbjct: 111 AFEMIMSSDLIIA-ASTSTFSMTPVNLGVPYNLVGIHNLT-------RD-AGFHIV-KEL 160

Query: 167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           +  A  I  + AL +G++    + EE      +++A  ++ +
Sbjct: 161 IFTASPITAQRALAVGILNHVVEVEELEDFT-LQMAHHISEK 201

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A Length = 256

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 40/215 (18%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITTS 55
           ++    V  LTL        +R  P +          +   A++ A+ +      ++T +
Sbjct: 13  VDTTDRVRTLTL--------NR--PQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGA 62

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
               F  GLDL                         +     D+  P + A+NG A   G
Sbjct: 63  -DPVFCAGLDLKELGDTTEL--------------PDISPKWPDMTKPVIGAINGAAVTGG 107

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA--LFRAKVGSATARRDVLLRAKKI 173
             LAL  D +I   +      +   +G  +P +  +  L +  VG   A R + L    +
Sbjct: 108 LELALYCDILIA-SENAKFADTHARVG-LMPTWGLSVRLPQK-VGVGLA-RRMSLTGDYL 163

Query: 174 KGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
             ++ALR GLV      ++ +  A  R+A  + G 
Sbjct: 164 SAQDALRAGLVTEVVAHDDLLTAA-RRVAASIVGN 197

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} Length = 274

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 27/217 (12%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITT 54
             E  G    +TL        +R  P A        I  + +A  +A+ +      ++T 
Sbjct: 14  KYEVDGHTATITL--------NR--PDALNALSPHMITELRAAYHEAENDDRVWLLVVTG 63

Query: 55  SHGKFFSNGLDLAWAQAAGSRAGARERL--LYMVESFRPVVAAMMDLPMPTVAAVNGHAA 112
           + G+ F +G D+      G     R  L      E+ +        +  P + AVNG   
Sbjct: 64  T-GRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICC 122

Query: 113 AAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGSATARRDVLL-RA 170
            AG     + D VI   ++   +   V IG  +       + R  +  + A R  L+ + 
Sbjct: 123 GAGMDWVTTTDIVIA-SEQATFFDPHVSIG-LVAGRELVRVSRV-LPRSIALRMALMGKH 179

Query: 171 KKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           +++  + A  +GL+    + +  +  A   +A  +  
Sbjct: 180 ERMSAQRAYELGLISEIVEHDRLLERA-HEIADIVNS 215

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A Length = 272

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 45/224 (20%), Positives = 89/224 (39%), Gaps = 44/224 (19%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITTS 55
            E++  + VL +        +R             I  +  A+   K++    + +I + 
Sbjct: 16  EEENRGIVVLGI--------NR--AYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSE 65

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
               F  G DL   +A  S +         V   R V+  + +LP+PT+AA++G A   G
Sbjct: 66  VPGIFCAGADLK-ERAKMSSSEVGP----FVSKIRAVINDIANLPVPTIAAIDGLALGGG 120

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
             LAL+ D  +       + + E  +           LP       RA +G + A ++++
Sbjct: 121 LELALACDIRVA-ASSAKMGLVETKLAIIPGGGGTQRLP-------RA-IGMSLA-KELI 170

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEE---QVAEASMRLAKQMAGR 208
             A+ + G+EA  +GL+    +  +        ++ LA++   +
Sbjct: 171 FSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQ 214

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum} Length = 278

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 43/216 (19%), Positives = 79/216 (36%), Gaps = 28/216 (12%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALIT 53
             +E+ G   ++T+        +R  PS         +  ++ A  +   +      ++T
Sbjct: 22  ALVEQRGHTLIVTM--------NR--PSRRNALSGEMMQIMVEAWDRVDNDPDIRCCILT 71

Query: 54  TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
            + G +F  G+DL  A        + +   Y        +     L  P +AAV G A A
Sbjct: 72  GA-GGYFCAGMDLK-AATKKPPGDSFKDGSYDPSRID-ALLKGRRLKKPLIAAVEGPAIA 128

Query: 114 AGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDVLLRAK 171
            G  +    D  +   +     +SE       P    +  R   ++    A  D+LL  +
Sbjct: 129 GGTEILQGTDIRVA-AESAKFGISEAKWS-LYPM-GGSAVRLVRQIPYTVA-CDLLLTGR 184

Query: 172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            I   EA  MGLV       + + +A + +A+ +A 
Sbjct: 185 HITAAEAKEMGLVGHVVPDGQALTKA-LEIAEIIAA 219

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum} Length = 277

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 47/221 (21%), Positives = 82/221 (37%), Gaps = 42/221 (19%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA-------IDSILSAIAKAKAEATPGSALITTS 55
           ++     +  L +         R  P            I++A  +       G A++   
Sbjct: 27  SVVADQGLATLVV--------SR--PPTNAMTRQVYREIVAAADELGRRDDIG-AVVLFG 75

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
             + FS G D+       +   A       +E+      A+  +P PTVAAV G+A  AG
Sbjct: 76  GHEIFSAGDDMP-ELRTLNAPEADTAARVRLEAID----AVAAIPKPTVAAVTGYALGAG 130

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
            TLAL+ D+ +   D      +E+  G          L        R  VGS+ A ++++
Sbjct: 131 LTLALAADWRVS-GDNVKFGATEILAGLIPGGGGMGRLT-------RV-VGSSRA-KELV 180

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
              +    EEAL +GL+      ++    A +  A++    
Sbjct: 181 FSGRFFDAEEALALGLIDDMVAPDDVYDSA-VAWARRYLEC 220

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens} Length = 287

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 11/179 (6%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           + S+ S I            +I ++ G  FS+G DL        R    E      +   
Sbjct: 62  LKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMM 120

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDY-F 149
            +     + P+P +A VNG A AAG  L  S D  +   DK       V++G        
Sbjct: 121 HIR----NHPVPVIAMVNGLATAAGCQLVASCDIAVA-SDKSSFATPGVNVG-LFCSTPG 174

Query: 150 TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
            AL RA V    A  ++L   + I  +EAL  GL+       E   E  MR+A+++A  
Sbjct: 175 VALARA-VPRKVA-LEMLFTGEPISAQEALLHGLLSKVVPEAELQEET-MRIARKIASL 230

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A Length = 262

 Score = 60.7 bits (148), Expect = 3e-11
 Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 25/212 (11%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHR------FGPSAIDSILSAIAKAKAEATPGSALITTS 55
             +EK G V  + L        +R             ++L+A  +  A+     A++   
Sbjct: 13  VRVEKAGPVTTVIL--------NRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGD 64

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
               F  G DL  A                     P+  + + L  P +AA++GHA A G
Sbjct: 65  -NGTFCAGADLK-AMGTDRGNELHP------HGPGPMGPSRLRLSKPVIAAISGHAVAGG 116

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKG 175
             LAL  D  ++  +  VL +     G  L D  T      +G + A  D++L  + +  
Sbjct: 117 IELALWCDLRVV-EEDAVLGVFCRRWGVPLIDGGTIRLPRLIGHSRA-MDLILTGRPVHA 174

Query: 176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            EAL +GLV       +    A   LA ++A 
Sbjct: 175 NEALDIGLVNRVVARGQAREAA-ETLAAEIAA 205

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* Length = 742

 Score = 60.8 bits (148), Expect = 7e-11
 Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 21/209 (10%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSN 62
            L     + ++ L        +   P+ I  + + + KA ++ T   A++       F  
Sbjct: 24  YLRLPHSLAMIRLCNPP---VNAVSPTVIREVRNGLQKAGSDHTV-KAIVICGANGNFCA 79

Query: 63  GLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSH 122
           G D+    A                    +V  +     P +AA+ G A   G  LAL  
Sbjct: 80  GADIHGFSAFTPGLALGS-----------LVDEIQRYQKPVLAAIQGVALGGGLELALGC 128

Query: 123 DYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRM 181
            Y I    K  + + EV +G  LP    T L    VG   A  D++   K +  +EALR+
Sbjct: 129 HYRIA-NAKARVGLPEVTLG-ILPGARGTQLLPRVVGVPVA-LDLITSGKYLSADEALRL 185

Query: 182 GLVQAAYDSEEQVAEASMRLAKQMAGRKW 210
           G++ A   S+    E +++ A+++  +  
Sbjct: 186 GILDAVVKSDP--VEEAIKFAQKIIDKPI 212

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis} Length = 261

 Score = 59.4 bits (145), Expect = 8e-11
 Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 41/221 (18%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA-------IDSILSAIAKAKAEATPGSALITTS 55
           ++     + V TL        +     A       +  +   I + + +      +I   
Sbjct: 9   SVRVEDHIAVATL--------NH--APANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGE 58

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
            G+FFS G D+    +      A E       +F      +     P +AA++G A   G
Sbjct: 59  -GRFFSAGADIKEFTSVTEAKQATELAQLGQVTFE----RVEKCSKPVIAAIHGAALGGG 113

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
              A+S        +   L + E+ +G          LP       R  VG A A  +++
Sbjct: 114 LEFAMSCHMRFA-TESAKLGLPELTLGLIPGFAGTQRLP-------RY-VGKAKA-CEMM 163

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           L +  I G EAL+ GLV   +  E  + +  +++AKQ+AG+
Sbjct: 164 LTSTPITGAEALKWGLVNGVFAEETFLDDT-LKVAKQIAGK 203

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A Length = 258

 Score = 59.1 bits (144), Expect = 1e-10
 Identities = 45/222 (20%), Positives = 78/222 (35%), Gaps = 45/222 (20%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITT 54
              + G V ++ L         R  P          +  I++A+            ++ T
Sbjct: 8   AARQEGAVGIIEL--------AR--PDVLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLT 56

Query: 55  SHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
             G+ F+ G D+    A                +       +  +  P +AAVNG A   
Sbjct: 57  GRGRAFAAGADIQ-EMAKDDPIRLEWL------NQFADWDRLSIVKTPMIAAVNGLALGG 109

Query: 115 GFTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDV 166
           GF LALS D ++           EV++G          L        +  +G   A  + 
Sbjct: 110 GFELALSCDLIVA-SSAAEFGFPEVNLGVMPGAGGTQRLT-------KL-IGPKRA-LEW 159

Query: 167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           L    ++  +EA ++G+V      E  + E  MRLA ++A +
Sbjct: 160 LWTGARMSAKEAEQLGIVNRVVSPELLMEET-MRLAGRLAEQ 200

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} PDB: 3r9s_A 3r0o_A Length = 267

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 46/216 (21%), Positives = 82/216 (37%), Gaps = 31/216 (14%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALIT 53
              E+ G+V V+T+        +R  P A           +  A+ +A+ +    + ++T
Sbjct: 11  ALAERRGNVMVITI--------NR--PEARNAINAAVSIGVGDALEEAQHDPEVRAVVLT 60

Query: 54  TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
            +  K F  G DL  A A        +        +         +  PT+AAVNG A  
Sbjct: 61  GAGDKSFCAGADLK-AIARRENLYHPDH-----PEWGFAGYVRHFIDKPTIAAVNGTALG 114

Query: 114 AGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDVLLRAK 171
            G  LAL+ D V+   ++    + EV  G  +      +FR   ++    A   +LL  +
Sbjct: 115 GGTELALASDLVVA-DERAQFGLPEVKRG-LIAA-AGGVFRIAEQLPRKVA-MRLLLTGE 170

Query: 172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            +    A   GL+    ++   +  A + LA  +  
Sbjct: 171 PLSAAAARDWGLINEVVEAGSVLDAA-LALASAITV 205

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus} Length = 265

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 42/221 (19%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITT 54
            +E+ G V +LT+        +R  P          +    +A  +   +    +A++T 
Sbjct: 12  LVERDGPVVILTM--------NR--PHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTG 61

Query: 55  SHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAA 114
           + G  +  G DL+     G              +    +     L  P +AAVNG     
Sbjct: 62  A-GSAYCVGGDLS----DGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGG 116

Query: 115 GFTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDV 166
           G  +    D  +   +     + EV  G          L        R  +    A  ++
Sbjct: 117 GCEMLQQTDIRVS-DEHATFGLPEVQRGLVPGAGSMVRLK-------RQ-IPYTKA-MEM 166

Query: 167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
           +L  + +   EA   GLV     +   + +A   LA ++  
Sbjct: 167 ILTGEPLTAFEAYHFGLVGHVVPAGTALDKA-RSLADRIVR 206

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A* Length = 278

 Score = 57.6 bits (140), Expect = 4e-10
 Identities = 50/221 (22%), Positives = 82/221 (37%), Gaps = 45/221 (20%)

Query: 4   LEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALITTS 55
           +E+   V ++TL        +R  P A        ++ + SA  +   +   G A+I T 
Sbjct: 29  VERDQRVGIITL--------NR--PQALNALNSQVMNEVTSAATELDDDPDIG-AIIITG 77

Query: 56  HGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
             K F+ G D+                      F      +  +  PT+AAV G+A   G
Sbjct: 78  SAKAFAAGADIKEMADLTFADA-------FTADFFATWGKLAAVRTPTIAAVAGYALGGG 130

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGAT--------LPDYFTALFRAKVGSATARRDVL 167
             LA+  D +I   D       E+ +G          L        RA +G A A  D++
Sbjct: 131 CELAMMCDVLIA-ADTAKFGQPEIKLGVLPGMGGSQRLT-------RA-IGKAKA-MDLI 180

Query: 168 LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR 208
           L  + +   EA R GLV     +++ + EA    A  ++  
Sbjct: 181 LTGRTMDAAEAERSGLVSRVVPADDLLTEA-RATATTISQM 220

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum} Length = 265

 Score = 57.2 bits (139), Expect = 5e-10
 Identities = 47/216 (21%), Positives = 83/216 (38%), Gaps = 36/216 (16%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALIT 53
             +E+   + ++T+        +R  P A          ++  A+ +  A+A     ++T
Sbjct: 17  VLVEQRDRILIITI--------NR--PKAKNSVNAAVSRALADAMDRLDADAGLSVGILT 66

Query: 54  TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
            + G  F  G+DL  A A G       R L   E              P +AAV G+A A
Sbjct: 67  GA-GGSFCAGMDLK-AFARGENVVVEGRGLGFTER---------PPAKPLIAAVEGYALA 115

Query: 114 AGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDVLLRAK 171
            G  LAL+ D ++         + EV  G  +      L R   ++  A A  ++ L   
Sbjct: 116 GGTELALATDLIVA-ARDSAFGIPEVKRG-LVAG-GGGLLRLPERIPYAIA-MELALTGD 171

Query: 172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            +  E A  +G+V    +    +  A + LA+++  
Sbjct: 172 NLSAERAHALGMVNVLAEPGAALDAA-IALAEKITA 206

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis} Length = 263

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 48/186 (25%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
              +L A     A+   G A++ T   + F+ G D+A              LL     + 
Sbjct: 39  EAEVLDAARDFDADLEIG-AIVVTGSERAFAAGADIAEMVTLTPHQARERNLL---SGWD 94

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT------ 144
               ++  +  P VAAV G+A   G  LA+  D VI   D       E+ +G        
Sbjct: 95  ----SLTQVRKPIVAAVAGYALGGGCELAMLCDLVIA-ADTARFGQPEITLGILPGLGGT 149

Query: 145 --LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
             L        RA VG A A  D+ L  + +  EEA R+GLV     + + + EA + +A
Sbjct: 150 QRLT-------RA-VGKAKA-MDLCLTGRSLTAEEAERVGLVSRIVPAADLLDEA-LAVA 199

Query: 203 KQMAGR 208
           +++A  
Sbjct: 200 QRIARM 205

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus} Length = 256

 Score = 56.0 bits (136), Expect = 1e-09
 Identities = 44/216 (20%), Positives = 77/216 (35%), Gaps = 37/216 (17%)

Query: 2   CTLEKHGDVFVLTLTGSSDVDEHRFGPSA--------IDSILSAIAKAKAEATPGSALIT 53
             +E+   V ++T+        +R  P A           + +A  +  + A    A+IT
Sbjct: 9   VLIEQRDRVLLITI--------NR--PDARNAVNRAVSQGLAAAADQLDSSADLSVAIIT 58

Query: 54  TSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAA 113
            + G  F  G+DL    +  +    R                 +    P +AAV G A A
Sbjct: 59  GA-GGNFCAGMDLKAFVSGEAVLSERGLGF-----------TNVPPRKPIIAAVEGFALA 106

Query: 114 AGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFR--AKVGSATARRDVLLRAK 171
            G  L LS D V+         + EV  G  +      L R   ++    A  ++ L  +
Sbjct: 107 GGTELVLSCDLVVA-GRSAKFGIPEVKRG-LVAG-AGGLLRLPNRIPYQVA-MELALTGE 162

Query: 172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
               E+A + G +    D  + +  A + LA ++  
Sbjct: 163 SFTAEDAAKYGFINRLVDDGQALDTA-LELAAKITA 197

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A* Length = 260

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 31  IDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR 90
           I+ +  A+   + +   G A++ T   K F+ G D+       +              F 
Sbjct: 36  IEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIK-EMQNRTFQDCYSG------KFL 87

Query: 91  PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGAT------ 144
                +  +  P +AAVNG+A   G  LA+  D +    +K      E+ +G        
Sbjct: 88  SHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYA-GEKAQFGQPEILLGTIPGAGGT 146

Query: 145 --LPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA 202
             L        RA VG + A  +++L   +I  ++A + GLV   +  E  V EA ++ A
Sbjct: 147 QRLT-------RA-VGKSLA-MEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEA-IQCA 196

Query: 203 KQMAGR 208
           +++A  
Sbjct: 197 EKIANN 202

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A* Length = 440

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 34/163 (20%), Positives = 54/163 (33%), Gaps = 17/163 (10%)

Query: 57  GKFFSNGLDLA-----------WAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA 105
            + FS G++L            +          +     +    RP       +  P VA
Sbjct: 230 KRVFSAGINLKYLSQGGISLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVA 289

Query: 106 AVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGSATARR 164
           AV+G A   G  L L  D V+         +     G  +P      L R   G   + R
Sbjct: 290 AVDGFAIGGGAQLLLVFDRVLA-SSDAYFSLPAAKEG-IIPGAANLRLGRF-AGPRVS-R 345

Query: 165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG 207
            V+L  ++I  +E     LV    + +E  A    R   ++ G
Sbjct: 346 QVILEGRRIWAKEPEARLLVDEVVEPDELDAAI-ERSLTRLDG 387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	243
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	100.0
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	100.0
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	100.0
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	100.0
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	100.0
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	100.0
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	100.0
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	100.0
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	100.0
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	100.0
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	100.0
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	100.0
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	100.0
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	100.0
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	100.0
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	100.0
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	100.0
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	100.0
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	100.0
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	100.0
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	100.0
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	100.0
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	100.0
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	100.0
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	100.0
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	100.0
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	100.0
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	100.0
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	100.0
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	100.0
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	100.0
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	100.0
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	100.0
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	100.0
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	100.0
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	100.0
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	100.0
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	100.0
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	100.0
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	100.0
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	100.0
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	100.0
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	100.0
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	100.0
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	100.0
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	100.0
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	100.0
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	100.0
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	100.0
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	100.0
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	100.0
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	100.0
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	100.0
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	100.0
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	100.0
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	100.0
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	100.0
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	100.0
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	100.0
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	100.0
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	100.0
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	100.0
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	100.0
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	100.0
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	100.0
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	100.0
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	100.0
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	100.0
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	100.0
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	100.0
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	100.0
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	100.0
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	100.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.87
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.85
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.85
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	99.68
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.66
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	99.62
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	99.58
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.34
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	98.91
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	98.91
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	98.9
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	98.87
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	98.87
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	98.87
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.44
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	98.42
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	98.37
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	98.33
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	98.31
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	98.22
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	98.21
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	98.19
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	98.12
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	98.1
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.89
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	97.76
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	97.53
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	97.52
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	97.52
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	97.35
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	97.33
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	97.27
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	97.19
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	96.86
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	96.73
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	96.46
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	96.46
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	92.8
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	89.88

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=100.00  E-value=3.2e-53  Score=357.31  Aligned_cols=213  Identities=30%  Similarity=0.384  Sum_probs=195.9

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      ||.+|++|+|++||||||+  +.|++|.+|+.+|.++++++++|++++ +||+||.|+.||+|.|++++.....      
T Consensus         1 lvl~E~~dgVa~itlnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~------   71 (254)
T 3hrx_A            1 MVLKERQDGVLVLTLNRPE--KLNAITGELLDALYAALKEGEEDREVR-ALLLTGAGRAFSAGQDLTEFGDRKP------   71 (254)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGTTTSCC------
T ss_pred             CeEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEeCCCCCcccCccHHHhcccch------
Confidence            6899999999999999998  899999999999999999999999999 9999999999999999998765311      


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-  148 (254)
T 3hrx_A           72 DYEAHLRRYNRVVEALSGLEKPLVVAVNGVAAGAGMSLALWGDLRLAAVG-ASFTTAFVRIGL-VPDSGLSFLLPRLVG-  148 (254)
T ss_dssp             CHHHHTHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHHHHhCCCCEEEEECCEeeehhhhhhhccceeeEcCC-CEEEchhhCcCc-CCcccHHHHHHHHhC-
Confidence            12334556788999999999999999999999999999999999999998 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++||++++|+||+++||||+|+++ +++.+++.+++++++..|  +.++..+|+.+++....
T Consensus       149 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~  214 (254)
T 3hrx_A          149 LAKAQELLLLSPRLSAEEALALGLVHRVVPA-EKLMEEALSLAKELAQGP--TRAYALTKKLLLETYRL  214 (254)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGGGS
T ss_pred             cchHHHHhhcCcccCHHHHHHCCCeEEecCc-HHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999998 899999999999999999  99999999998776443

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=1.6e-52  Score=356.34  Aligned_cols=217  Identities=24%  Similarity=0.329  Sum_probs=193.2

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.|+.||+|.|++++..... ....+
T Consensus        16 ~il~~~~~gVa~itlnRP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~   91 (274)
T 4fzw_C           16 FILSHVEKGVMTLTLNRPE--RLNSFNDEMHAQLAECLKQVERDDTIR-CLLLTGAGRGFCAGQDLNDRNVDPT-GPAPD   91 (274)
T ss_dssp             CEEEEEETTEEEEEECCTT--TTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCCC----------CCC
T ss_pred             cEEEEEECCEEEEEEcCcC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcChHhhhcccc-ccchH
Confidence            5789999999999999997  899999999999999999999999999 9999999999999999998754221 11122


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        92 ~~~~~~~~~~~l~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  168 (274)
T 4fzw_C           92 LGMSVERFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARS-AKFVMAFSKLGL-IPDCGGTWLLPRVAG-  168 (274)
T ss_dssp             HHHHHHHTHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCGGGTTC-CCTTTHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEECCceeecCceeeeccceEEECCC-CEEECcccCccc-CCCccHHHHHHHHhh-
Confidence            34455667788999999999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..+++++++||++++|+||+++||||+|+|+ +++.+++.++|++++..|  +.++..+|+.++....
T Consensus       169 ~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  233 (274)
T 4fzw_C          169 RARAMGLALLGNQLSAEQAHEWGMIWQVVDD-ETLADTAQQLARHLATQP--TFGLGLIKQAINSAET  233 (274)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCcCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999998 899999999999999999  9999999999987543

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=100.00  E-value=4.1e-52  Score=351.01  Aligned_cols=210  Identities=21%  Similarity=0.323  Sum_probs=192.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++|+|++||||||+  +.|++|.+|+.+|.++++.++.|++++ +||+||.|++||+|.|++++...    .   .
T Consensus         7 l~ve~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~----~---~   76 (258)
T 4fzw_A            7 LIVSRQQRVLLLTLNRPA--ARNALNNALLMQLVNELEAAATDTSIS-VCVITGNARFFAAGADLNEMAEK----D---L   76 (258)
T ss_dssp             EEEEEETTEEEEEEECGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEEECBCHHHHHTC----C---H
T ss_pred             EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEeCCCCceeCCCchhhhccc----h---h
Confidence            578999999999999997  889999999999999999999999999 99999999999999999987652    1   1


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+.+....++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  153 (258)
T 4fzw_A           77 AATLNDTRPQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGEN-ARFGLPEITLGI-MPGAGGTQRLIRSVG-K  153 (258)
T ss_dssp             HHHHTCSHHHHHHHHHTCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             hhHHHhHHHHHHHHHHHCCCCEEEEEcCcceeeeeEeecccceEEECCC-CEEECcccCCCc-CCCchHHHHHHHHhC-H
Confidence            1233345678889999999999999999999999999999999999988 899999999999 67665 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .+++++++||++++|+||+++||||+|+|+ +++.+++.+++++++..|  |.++..+|+.+++...
T Consensus       154 ~~A~~llltg~~i~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  217 (258)
T 4fzw_A          154 SLASKMVLSGESITAQQAQQAGLVSDVFPS-DLTLEYALQLASKMARHS--PLALQAAKQALRQSQE  217 (258)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCcCcHHHHHHCCCeeEEeCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 899999999999999999  9999999999987643

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=100.00  E-value=6.1e-51  Score=345.55  Aligned_cols=215  Identities=21%  Similarity=0.303  Sum_probs=196.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||+||.|+.||+|.|++++.....  .....
T Consensus         6 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~~~   80 (268)
T 3i47_A            6 LLYEIQDKVGLLTMNRIS--KHNAFDNQLLTEMRIRLDSAINDTNVR-VIVLKANGKHFSAGADLTWMQSMAN--FTEEE   80 (268)
T ss_dssp             EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECSSCSBCSBCHHHHHHHHT--CCHHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCeeCCCChhhhhcccc--ccHHH
Confidence            778999999999999997  889999999999999999999999999 9999999999999999998865311  11223


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ..++...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+.++++++| ..
T Consensus        81 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG-~~  157 (268)
T 3i47_A           81 NLEDSLVLGNLMYSISQSPKPTIAMVQGAAFGGGAGLAAACDIAIASTS-ARFCFSEVKLGL-IPAVISPYVVRAIG-ER  157 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEhHhHHHHHhCCEEEEcCC-CEEECcccccCC-CcccHHHHHHHHhC-HH
Confidence            3345566788999999999999999999999999999999999999988 899999999999 78888779999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+..|  |.++..+|+.++....
T Consensus       158 ~A~~llltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  220 (268)
T 3i47_A          158 AAKMLFMSAEVFDATRAYSLNLVQHCVPD-DTLLEFTLKYASQISNNA--PEAVKNSKQLAQYVAN  220 (268)
T ss_dssp             HHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999998 899999999999999999  9999999999987643

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=100.00  E-value=4.1e-50  Score=337.58  Aligned_cols=217  Identities=21%  Similarity=0.306  Sum_probs=195.8

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec-CCCccccCCChhhHHhcccccchH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS-HGKFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g-~g~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      ||.++++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++| .|+.||+|.|++++.....    .
T Consensus         1 mv~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~~~----~   73 (250)
T 2a7k_A            1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S   73 (250)
T ss_dssp             CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred             CeEEEeeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCCccCCcCHHHHhhcCc----h
Confidence            6889999999999999997  899999999999999999999999999 999999 9999999999998765211    2


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      +....+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+.++++++| 
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~~~vG-  150 (250)
T 2a7k_A           74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG-  150 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCCEEEEECCeEeHHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCcHHHHHHHHhH-
Confidence            222344556788899999999999999999999999999999999999988 899999999999 78777339999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHh
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++......+
T Consensus       151 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  218 (250)
T 2a7k_A          151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLL  218 (250)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccHHHHHHcCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCH
Confidence            9999999999999999999999999999987 899999999999999999  9999999999987654433

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=100.00  E-value=1.7e-50  Score=336.45  Aligned_cols=215  Identities=22%  Similarity=0.283  Sum_probs=196.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.++++++++| +++ +||+||.|+.||+|.|++++... +    ...
T Consensus         7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d-~vr-~vvltg~g~~F~aG~Dl~~~~~~-~----~~~   76 (233)
T 3r6h_A            7 VTYTHDDAIGVIRMDDG---KVNVLGPTMQQALNEAIDAADRD-NVG-ALVIAGNHRVFSGGFDLKVLTSG-E----AKP   76 (233)
T ss_dssp             EEEEEETTEEEEEECCS---SSCCCSHHHHHHHHHHHHHHHHH-TCS-EEEEECCSSEEECCSCHHHHC--------CHH
T ss_pred             eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhC-CCe-EEEEECCCCCccCCcChHHHhcc-C----hHH
Confidence            67899999999999999   78999999999999999999987 689 99999999999999999998652 1    223


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ..++...+++++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|++||+++|+++|++|++++++++| ..
T Consensus        77 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~~~~~g~~~l~~~~g-~~  154 (233)
T 3r6h_A           77 AIDMLRGGFELSYRLLSYPKPVVIACTGHAIAMGAFLLCSGDHRVAAHA-YNVQANEVAIGMTIPYAAMEVLKLRLT-PS  154 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CCEECCGGGGTCCCCHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCcchHHHHHHHHhCCEEEEeCC-cEEECchhhhCCCCCccHHHHHHHHhC-HH
Confidence            4466677889999999999999999999999999999999999999987 899999999999556677899999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  |.+++.+|+.+++.....++
T Consensus       155 ~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  221 (233)
T 3r6h_A          155 AYQQAAGLAKTFFGETALAAGFIDEISLP-EVVLSRAEEAAREFAGLN--QQAHNATKLRARAEALKAIR  221 (233)
T ss_dssp             HHHHHHHSCCEECHHHHHHHTSCSEECCG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHcCCcCCHHHHHHcCCCcEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999999999999998 899999999999999999  99999999999988766655

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=100.00  E-value=3.1e-50  Score=334.63  Aligned_cols=214  Identities=23%  Similarity=0.297  Sum_probs=195.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.+++++++.|+  + +||+||.|++||+|.|++++...      ...
T Consensus         8 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~--~-~vvltg~g~~F~aG~Dl~~~~~~------~~~   75 (232)
T 3ot6_A            8 VSYHLDDGVATLTLNNG---KVNAISPDVIIAFNAALDQAEKDR--A-IVIVTGQPGILSGGYDLKVMTSS------AEA   75 (232)
T ss_dssp             EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHHTT--C-EEEEECBTEEEECCBCHHHHHHC------HHH
T ss_pred             eEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCC--C-EEEEECCCCCccCCcCHHHHhhC------hHH
Confidence            67899999999999999   779999999999999999999764  7 99999999999999999998752      233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ..++...+++++.++.++||||||+|||+|+|||++++++||+||+++++++|++||+++|+.+|++|++++++++| ..
T Consensus        76 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~~a~f~~pe~~~Gl~p~~~g~~~l~~~ig-~~  154 (232)
T 3ot6_A           76 AINLVAQGSTLARRMLSHPFPIIVACPGHAVAKGAFLLLSADYRIGVAGPFSIGLNEVQIGMTMHHAGIELARDRLR-KS  154 (232)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEECCEEEETHHHHHHTTSSEEEEECSSCCEECCTTTTTCCCCHHHHHHHHHHSC-HH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHHCCEEEEeCCCcEEECcccccCCCCchhHHHHHHHHhC-HH
Confidence            45667778899999999999999999999999999999999999999864699999999999556777889999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  |.+++.+|+.++......++
T Consensus       155 ~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  221 (232)
T 3ot6_A          155 AFNRSVINAEMFDPEGAMAAGFLDKVVSV-EELQGAALAVAAQLKKIN--MNAHKKTKLKVRKGLLDTLD  221 (232)
T ss_dssp             HHHHHHTSCCEECHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCCEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHhHhHHH
Confidence            99999999999999999999999999998 899999999999999999  99999999999988766555

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=100.00  E-value=2.2e-50  Score=341.09  Aligned_cols=212  Identities=19%  Similarity=0.341  Sum_probs=194.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  + |++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++.....    ...
T Consensus         8 v~~~~~~~v~~itlnrp~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   79 (261)
T 3pea_A            8 LSVRVEDHIAVATLNHAP--A-NAMSSQVMHDVTELIDQVEKDDNIR-VVVIHGEGRFFSAGADIKEFTSVTE----AKQ   79 (261)
T ss_dssp             EEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSSTTCC----HHH
T ss_pred             eEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceeCCcCHHHHhhcCc----hhH
Confidence            678999999999999996  6 9999999999999999999999999 9999999999999999998765311    233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  156 (261)
T 3pea_A           80 ATELAQLGQVTFERVEKCSKPVIAAIHGAALGGGLEFAMSCHMRFATES-AKLGLPELTLGL-IPGFAGTQRLPRYVG-K  156 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence            3455556678899999999999999999999999999999999999988 899999999999 67766 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  +.++..+|+.++....
T Consensus       157 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  220 (261)
T 3pea_A          157 AKACEMMLTSTPITGAEALKWGLVNGVFAE-ETFLDDTLKVAKQIAGKS--PATARAVLELLQTTKS  220 (261)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 899999999999999999  9999999999987543

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=100.00  E-value=1.8e-50  Score=341.95  Aligned_cols=222  Identities=23%  Similarity=0.280  Sum_probs=199.5

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCcc-ccCCChhhHHhcccccchH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF-SNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F-~~G~dl~~~~~~~~~~~~~   79 (243)
                      .|.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.| |+|.|++++..... ..+.
T Consensus         5 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FF~aG~Dl~~~~~~~~-~~~~   80 (263)
T 3lke_A            5 YVHTEIQNDALYITLDYPE--KKNGLDAELGTSLLEAIRAGNNETSIH-SIILQSKHRAYFSSGPRLEDLLICAS-DQSD   80 (263)
T ss_dssp             SEEEEECSSEEEEEECCGG--GTTBCCHHHHHHHHHHHHHHHHCSSCC-EEEEEESCTTEEECBSCHHHHHHHHH-CSSS
T ss_pred             EEEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEEcCCCceEecCcCHHHHHhhcc-cCCH
Confidence            3678999999999999997  899999999999999999999999999 99999999999 99999998865100 0113


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....++...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~~~vG  158 (263)
T 3lke_A           81 VRLREVLHVLNHCVLEIFTSPKVTVALINGYAYGGGFNMMLACDRRIALRR-AKFLENFHKMGI-SPDLGASYFLPRIIG  158 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHGGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEcCC-CEEeCchHhhCC-CCCccHHHHHHHHhC
Confidence            334556777889999999999999999999999999999999999999988 899999999999 67776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                       ..++++++++|++++|+||+++||||+|+++.+++.+++.++|+++++.|  |.+++.+|+.++......++
T Consensus       159 -~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  228 (263)
T 3lke_A          159 -YEQTMNLLLEGKLFTSEEALRLGLIQEICENKQELQERVKNYLKAVSEGY--VPAIAATKKLLKGKAAEELK  228 (263)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTHHHHHH
T ss_pred             -HHHHHHHHHhCCCcCHHHHHHcCCCcEecCChhHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCHH
Confidence             99999999999999999999999999999944999999999999999999  99999999999877554443

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=100.00  E-value=4.8e-50  Score=341.15  Aligned_cols=212  Identities=19%  Similarity=0.257  Sum_probs=196.1

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  + |++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++... .    ..
T Consensus        25 ~v~~~~~~~Va~ItlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~-~----~~   95 (277)
T 4di1_A           25 FVSVVADQGLATLVVSRPP--T-NAMTRQVYREIVAAADELGRRDDIG-AVVLFGGHEIFSAGDDMPELRTL-N----AP   95 (277)
T ss_dssp             SEEEEEETTEEEEEECCTT--T-TCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSCSBCCBCHHHHHTC-C----HH
T ss_pred             eEEEEEECCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCEecCcCccccccc-C----hH
Confidence            3678999999999999996  7 9999999999999999999999999 99999999999999999998753 1    33


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        96 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-  172 (277)
T 4di1_A           96 EADTAARVRLEAIDAVAAIPKPTVAAVTGYALGAGLTLALAADWRVSGDN-VKFGATEILAGL-IPGGGGMGRLTRVVG-  172 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEehhHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCchHHHHHHHHhC-
Confidence            44566677889999999999999999999999999999999999999988 899999999999 78776 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  +.++..+|+.++....
T Consensus       173 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  237 (277)
T 4di1_A          173 SSRAKELVFSGRFFDAEEALALGLIDDMVAP-DDVYDSAVAWARRYLECP--PRALAAAKAVINDVFE  237 (277)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999998 899999999999999999  9999999999987543

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=100.00  E-value=5.1e-50  Score=341.99  Aligned_cols=215  Identities=24%  Similarity=0.279  Sum_probs=196.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++++++|++++ +||++|.|++||+|.|++++..... ......
T Consensus        19 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~~   94 (279)
T 3g64_A           19 LRVEITDGVATVTLARPD--KLNALTFEAYADLRDLLAELSRRRAVR-ALVLAGEGRGFCSGGDVDEIIGATL-SMDTAR   94 (279)
T ss_dssp             EEEEEETTEEEEEESCGG--GTTCBCHHHHHHHHHHHHHHHHTTCCS-EEEEEECSSCSBCCBCTTTTHHHHT-TCCHHH
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCceecCcCHHHHhhccc-cchhhH
Confidence            678999999999999996  789999999999999999999999999 9999999999999999998765322 122233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCC-chhh-HHHHHHHhCC
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATL-PDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~-p~~g-~~~l~~~~g~  159 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ + |++| +++|++++| 
T Consensus        95 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~~p~~g~~~~l~r~vG-  171 (279)
T 3g64_A           95 LLDFNRMTGQVVRAVRECPFPVIAALHGVAAGAGAVLALAADFRVADPS-TRFAFLFTRVGL-SGGDMGAAYLLPRVVG-  171 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CSCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEEcCeeccccHHHHHhCCEEEEeCC-CEEeCchhhcCC-CCCchhHHHHHHHHhC-
Confidence            4456667789999999999999999999999999999999999999988 899999999999 6 7775 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++|+..|  +.++..+|+.++...
T Consensus       172 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  235 (279)
T 3g64_A          172 LGHATRLLMLGDTVRAPEAERIGLISELTEE-GRADEAARTLARRLADGP--ALAHAQTKALLTAEL  235 (279)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTCCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCcCHHHHHHCCCCCEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999998 889999999999999999  999999999998764

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=100.00  E-value=6.4e-50  Score=338.95  Aligned_cols=212  Identities=20%  Similarity=0.332  Sum_probs=195.9

Q ss_pred             ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.++ ++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.| +.||+|.|++++... .    .
T Consensus        10 v~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~   81 (265)
T 3kqf_A           10 ISVDYATPHVVKISLNRER--QANSLSLALLEELQNILTQINEEANTR-VVILTGAGEKAFCAGADLKERAGM-N----E   81 (265)
T ss_dssp             EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCHHHHTTC-C----H
T ss_pred             EEEEEeeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEecCCCCeeeeCcChHHHhcc-C----H
Confidence            6788 88999999999997  789999999999999999999999999 99999999 999999999988652 2    3


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG  159 (265)
T 3kqf_A           82 EQVRHAVSMIRTTMEMVEQLPQPVIAAINGIALGGGTELSLACDFRIAAES-ASLGLTETTLAI-IPGAGGTQRLPRLIG  159 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-cEEECcccccCc-CCCccHHHHHHHHhC
Confidence            445566777889999999999999999999999999999999999999988 899999999999 77776 789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       160 -~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  224 (265)
T 3kqf_A          160 -VGRAKELIYTGRRISAQEAKEYGLVEFVVPV-HLLEEKAIEIAEKIASNG--PIAVRLAKEAISNGIQ  224 (265)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhc
Confidence             9999999999999999999999999999997 899999999999999999  9999999999987543

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=100.00  E-value=8.2e-50  Score=337.91  Aligned_cols=215  Identities=21%  Similarity=0.255  Sum_probs=194.2

Q ss_pred             eeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcc-cccchHH
Q 041046            3 TLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAG-SRAGARE   80 (243)
Q Consensus         3 ~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~-~~~~~~~   80 (243)
                      .++. +++|++|+||+|+  + |++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++.... ....+..
T Consensus         9 ~~~~~~~~v~~itlnrP~--~-Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   84 (263)
T 3l3s_A            9 LGEVLSEGVLTLTLGRAP--A-HPLSRAMIAALHDALRRAMGDDHVH-VLVIHGPGRIFCAGHDLKEIGRHRADPDEGRA   84 (263)
T ss_dssp             EEEEESSSEEEEEECSTT--T-CCCCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCSCSCCCCC-----CCSHH
T ss_pred             EEEEeeCCEEEEEECCCC--C-CCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhccccccccHH
Confidence            3444 8899999999997  7 9999999999999999999999999 999999999999999999875421 0011244


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+++|++++| .
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~~~g~~~~l~r~vG-~  161 (263)
T 3l3s_A           85 FVTDLFEACSALMLDLAHCPKPTIALVEGIATAAGLQLMAACDLAYASPA-ARFCLPGVQNGG-FCTTPAVAVSRVIG-R  161 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSCEEEEESSEEETHHHHHHHHSSEEEECTT-CEEECCTTTTTS-CCHHHHHHHHTTSC-H
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEEHHHHHHHHHCCEEEecCC-CEEeCchhccCC-CCccHHHHHHHHcC-H
Confidence            55667778899999999999999999999999999999999999999988 899999999999 58888999999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.+++.+|+.++....
T Consensus       162 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  225 (263)
T 3l3s_A          162 RAVTEMALTGATYDADWALAAGLINRILPE-AALATHVADLAGALAARN--QAPLRRGLETLNRHLE  225 (263)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSSSEECCH-HHHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEEeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999997 899999999999999999  9999999999987643

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.2e-49  Score=340.33  Aligned_cols=213  Identities=21%  Similarity=0.301  Sum_probs=198.0

Q ss_pred             ceeeEe--CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchH
Q 041046            2 CTLEKH--GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~~--~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.++++  ++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++...    ...
T Consensus        26 v~~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~----~~~   98 (286)
T 3myb_A           26 LLLQDRDERGVVTLTLNRPQ--AFNALSEAMLAALGEAFGTLAEDESVR-AVVLAASGKAFCAGHDLKEMRAE----PSR   98 (286)
T ss_dssp             SEEEEECTTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSSCSBCCBCHHHHHSS----CCH
T ss_pred             EEEEEecCCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcChhhhhcc----ccH
Confidence            678899  999999999997  789999999999999999999999999 99999999999999999998752    224


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+++|++++| 
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~lGl-~~~g~~~~L~r~vG-  175 (286)
T 3myb_A           99 EYYEKLFARCTDVMLAIQRLPAPVIARVHGIATAAGCQLVAMCDLAVATRD-ARFAVSGINVGL-FCSTPGVALSRNVG-  175 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCHHHHHHHTTTSC-
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEEEECCeehHHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCchHHHHHHHHcC-
Confidence            455677778899999999999999999999999999999999999999988 899999999999 48888899999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       176 ~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  240 (286)
T 3myb_A          176 RKAAFEMLVTGEFVSADDAKGLGLVNRVVAP-KALDDEIEAMVSKIVAKP--RAAVAMGKALFYRQIE  240 (286)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 899999999999999999  9999999999987643

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=2.2e-49  Score=334.39  Aligned_cols=211  Identities=24%  Similarity=0.329  Sum_probs=187.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.....    .+.
T Consensus         5 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   77 (257)
T 2ej5_A            5 IRYEVKGQVAWLTLNRPD--QLNAFTEQMNAEVTKALKQAGADPNVR-CVVITGAGRAFCAGEDLSGVTEEMD----HGD   77 (257)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCC-------C----HHH
T ss_pred             eEEEeECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCcCHHHHhhccc----hhH
Confidence            678899999999999997  899999999999999999999999999 9999999999999999998764211    111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ..+.  .+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        78 ~~~~--~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  152 (257)
T 2ej5_A           78 VLRS--RYAPMMKALHHLEKPVVAAVNGAAAGAGMSLALACDFRLLSEK-ASFAPAFIHVGL-VPDAGHLYYLPRLVG-R  152 (257)
T ss_dssp             HHHH--THHHHHHHHHHCCSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             HHHH--HHHHHHHHHHhCCCCEEEEECccccchhHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-H
Confidence            1111  3678889999999999999999999999999999999999988 899999999999 67776 679999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++....
T Consensus       153 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  216 (257)
T 2ej5_A          153 AKALELAVLGEKVTAEEAAALGLATKVIPL-SDWEEEVKQFAERLSAMP--TKAIGLIKRLLRESEE  216 (257)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTCCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCccCHHHHHHcCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 889999999999999998  9999999999987544

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=100.00  E-value=1e-49  Score=339.25  Aligned_cols=216  Identities=18%  Similarity=0.240  Sum_probs=196.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|++||+|.|++++...   ..+...
T Consensus        30 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~---~~~~~~  103 (276)
T 3rrv_A           30 IDVRADGALRIITLNRPD--SLNSVNDDLHVGLARLWQRLTDDPTAR-AAVITGAGRAFSAGGDFGYLKEL---SADADL  103 (276)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHH---HHCHHH
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCcccCCcCHHHHhhc---ccchHH
Confidence            678999999999999996  799999999999999999999999999 99999999999999999988652   112334


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ..++...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus       104 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  180 (276)
T 3rrv_A          104 RAKTIRDGREIVLGMARCRIPVVAAVNGPAVGLGCSLVALSDIVYIAEN-AYLADPHVQVGL-VAADGGPLTWPLHIS-L  180 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHGGGTSC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECceeeHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCccHHHHHHHHhC-H
Confidence            4566677889999999999999999999999999999999999999988 899999999999 67765 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      .++++++++|+.++|+||+++||||+|+   +++.+++.++|++++..|  |.++..+|+.++......++
T Consensus       181 ~~A~ellltG~~i~A~eA~~~GLv~~vv---~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~~~~~l~  246 (276)
T 3rrv_A          181 LLAKEYALTGTRISAQRAVELGLANHVA---DDPVAEAIACAKKILELP--QQAVESTKRVLNIHLERAVL  246 (276)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEE---SSHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCHHHHH---HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhhcCHH
Confidence            9999999999999999999999999999   579999999999999999  99999999999876554443

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=1.2e-50  Score=341.97  Aligned_cols=218  Identities=24%  Similarity=0.292  Sum_probs=188.9

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|++||+|.|++++..... ..   
T Consensus         7 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~---   79 (256)
T 3qmj_A            7 TLQIDDDNRVRTLTLNRPE--ALNAFNEALYDATAQALLDAADDPQVA-VVLLTGSGRGFSAGTDLAEMQARIT-DP---   79 (256)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCHHHHHHHHH-SS---
T ss_pred             eEEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccc-ch---
Confidence            3678999999999999996  789999999999999999999999999 9999999999999999998765211 00   


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  156 (256)
T 3qmj_A           80 NFSEGKFGFRGLIKALAGFPKPLICAVNGLGVGIGATILGYADLAFMSST-ARLKCPFTSLGV-APEAASSYLLPQLVG-  156 (256)
T ss_dssp             SCCCCSSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEEETT-CEEECCGGGC----CCTTHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhCCEEEEeCC-CEEECcccccCC-CCCccHHHHHHHHhC-
Confidence            00112334678889999999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++......++
T Consensus       157 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  225 (256)
T 3qmj_A          157 RQNAAWLLMSSEWIDAEEALRMGLVWRICSP-EELLPEARRHAEILAAKP--ISSLMAVKHTMVEPNRAQIA  225 (256)
T ss_dssp             HHHHHHHHHSCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEeCH-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhcCCHH
Confidence            9999999999999999999999999999998 899999999999999998  99999999999876544433

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=100.00  E-value=2.1e-49  Score=339.64  Aligned_cols=217  Identities=19%  Similarity=0.285  Sum_probs=191.3

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--chH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GAR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~~   79 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++.......  .+.
T Consensus        26 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~  102 (290)
T 3sll_A           26 LVDRPRPEIALVTLNRPE--RMNAMAFDVMLPFKQMLVDISHDNDVR-AVVITGAGKGFCSGADQKSAGPIPHIGGLTQP  102 (290)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCC------CCCSSCTTCCHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEECCCCCeeCCcChHHHhcccccccccch
Confidence            678899999999999997  799999999999999999999999999 999999999999999999876532101  112


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCch-hh-HHHHHHHh
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPD-YF-TALFRAKV  157 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~-~g-~~~l~~~~  157 (243)
                      ....++...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|+ +| +++|++++
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~~g~~~~L~r~v  180 (290)
T 3sll_A          103 TIALRSMELLDEVILTLRRMHQPVIAAINGAAIGGGLCLALACDVRVASQD-AYFRAAGINNGL-TASELGLSYLLPRAI  180 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTTTTTTS-CSCCTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCCEEEEECCeehHHHHHHHHHCCEEEEeCC-CEEECchhccCc-CCCcccHHHHHHHHh
Confidence            334566777889999999999999999999999999999999999999988 899999999999 776 55 78999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+..|  |.+++.+|+.++....
T Consensus       181 G-~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  246 (290)
T 3sll_A          181 G-TSRASDIMLTGRDVDADEAERIGLVSRKVAS-ESLLEECYAIGERIAGFS--RPGIELTKRTIWSGLD  246 (290)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHT
T ss_pred             C-HHHHHHHHHcCCCCCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhcc
Confidence            9 9999999999999999999999999999998 889999999999999999  9999999999987654

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=2.1e-49  Score=333.77  Aligned_cols=214  Identities=30%  Similarity=0.399  Sum_probs=191.2

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      ||.++ +++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++..... .....
T Consensus         1 ~i~~~-~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~   75 (253)
T 1uiy_A            1 MVQVE-KGHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE-LGAEE   75 (253)
T ss_dssp             CEEEE-CSSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT-SCHHH
T ss_pred             CEEEE-eCCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcChHHHHhccc-CCchh
Confidence            67889 9999999999996  799999999999999999999999999 9999999999999999998765210 01111


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      .... ...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+++|++++| .
T Consensus        76 ~~~~-~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~  151 (253)
T 1uiy_A           76 NYRH-SLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E  151 (253)
T ss_dssp             HHHH-HHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred             HHHH-HHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEcCC-cEEeCcccccCc-CCchHHHHHHHHhC-H
Confidence            1111 112678889999999999999999999999999999999999988 899999999999 78888779999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  214 (253)
T 1uiy_A          152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLALP  214 (253)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHhCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 889999999999999998  999999999987653

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=100.00  E-value=1.6e-49  Score=337.39  Aligned_cols=215  Identities=19%  Similarity=0.283  Sum_probs=192.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.......+..+.
T Consensus         5 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   81 (269)
T 1nzy_A            5 IGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRDH   81 (269)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHH
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhhCCCee-EEEEECCCCCcccCcCHHHHhhcccccChHHH
Confidence            678999999999999997  799999999999999999999999999 99999999999999999986431000001222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  158 (269)
T 1nzy_A           82 FRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGI-GNDTATSYSLARIVG-M  158 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEecCC-CEEeCcccccCC-CCCccHHHHHHHHhh-H
Confidence            2344556788899999999999999999999999999999999999988 899999999999 68776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  |.++..+|+.++..
T Consensus       159 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~  220 (269)
T 1nzy_A          159 RRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAG  220 (269)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhh
Confidence            999999999999999999999999999987 899999999999999998  99999999999765

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=100.00  E-value=8.3e-50  Score=339.50  Aligned_cols=211  Identities=15%  Similarity=0.207  Sum_probs=192.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++++  |++++ +||++|.|+.||+|.|++++... .    ...
T Consensus        18 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~--d~~vr-~vVltg~g~~F~aG~Dl~~~~~~-~----~~~   87 (275)
T 3hin_A           18 LVVDTVGPVLTIGLNRPK--KRNALNDGLMAALKDCLTDI--PDQIR-AVVIHGIGDHFSAGLDLSELRER-D----ATE   87 (275)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHTSSC--CTTCC-EEEEEESSSCSBCCBCGGGCCCC-C----HHH
T ss_pred             EEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHh--CcCce-EEEEECCCCCccCCCCHHHHhcc-C----hhh
Confidence            678999999999999997  79999999999999999999  57999 99999999999999999987541 1    233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        88 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  164 (275)
T 3hin_A           88 GLVHSQTWHRVFDKIQYCRVPVIAALKGAVIGGGLELACAAHIRVAEAS-AYYALPEGSRGI-FVGGGGSVRLPRLIG-V  164 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-H
Confidence            3455667888999999999999999999999999999999999999988 899999999999 77775 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++.....
T Consensus       165 ~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~ia~~~--p~a~~~~K~~l~~~~~~  229 (275)
T 3hin_A          165 ARMADMMLTGRVYSAAEGVVHGFSQYLIEN-GSAYDKALELGNRVAQNA--PLTNFAVLQALPMIAEA  229 (275)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEESS-SCHHHHHHHHHHHHTTSC--HHHHHHHHTHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCCCEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcC
Confidence            999999999999999999999999999998 889999999999999999  99999999999876543

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=100.00  E-value=1.4e-49  Score=335.04  Aligned_cols=206  Identities=21%  Similarity=0.338  Sum_probs=189.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++..       .  
T Consensus         8 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~-------~--   75 (255)
T 3p5m_A            8 ISVEHDGAVLRIRLDRPE--KLNAVDTPMLEELSVHIRDAEADESVR-AVLLTGAGRAFCSGGDLTGGDT-------A--   75 (255)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCEECC---CH-------H--
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCccCCCChhhhcc-------h--
Confidence            678999999999999997  789999999999999999999999999 9999999999999999998652       1  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                        .+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        76 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  150 (255)
T 3p5m_A           76 --GAADAANRVVRAITSLPKPVIAGVHGAAVGFGCSLALACDLVVAAPA-SYFQLAFTRVGL-MPDGGASALLPLLIG-R  150 (255)
T ss_dssp             --HHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECGGGGGTC-CCCTTHHHHTHHHHC-H
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEeCCeehhhHHHHHHHCCEEEEcCC-cEEeCcccccCc-CCCccHHHHHHHHhC-H
Confidence              34556788999999999999999999999999999999999999988 899999999999 67765 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  +.++..+|+.++....
T Consensus       151 ~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  214 (255)
T 3p5m_A          151 ARTSRMAMTAEKISAATAFEWGMISHITSA-DEYESVLTDVLRSVSGGP--TLAFGWTKRALAAATL  214 (255)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEECCT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCCCEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 889999999999999999  9999999999986543

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=100.00  E-value=3e-49  Score=338.14  Aligned_cols=212  Identities=21%  Similarity=0.318  Sum_probs=191.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+++|.++++.++.|++++ +||++|.|+.||+|.|++++...   .. ...
T Consensus        35 v~~~~~~~V~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~---~~-~~~  107 (287)
T 2vx2_A           35 TSARQLDGIRNIVLSNPK--KRNTLSLAMLKSLQSDILHDADSNDLK-VIIISAEGPVFSSGHDLKELTEE---QG-RDY  107 (287)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHTTTTCTTCC-EEEEEESSSEEECCSCCC-CCGG---GC-HHH
T ss_pred             eEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhcc---cc-hhH
Confidence            678899999999999997  789999999999999999999999999 99999999999999999986542   11 233


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+..|++++| ..
T Consensus       108 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~L~r~vG-~~  184 (287)
T 2vx2_A          108 HAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDK-SSFATPGVNVGL-FCSTPGVALARAVP-RK  184 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHTTSC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchHHHHHHHHhh-HH
Confidence            3455566788999999999999999999999999999999999999988 899999999999 78887433999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++++++++|+.++|+||+++||||+|+++ +++.+++.++|++|+..|  |.++..+|+.++...
T Consensus       185 ~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  246 (287)
T 2vx2_A          185 VALEMLFTGEPISAQEALLHGLLSKVVPE-AELQEETMRIARKIASLS--RPVVSLGKATFYKQL  246 (287)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence            99999999999999999999999999998 899999999999999998  999999999987653

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=100.00  E-value=5.4e-49  Score=332.68  Aligned_cols=216  Identities=21%  Similarity=0.312  Sum_probs=191.7

Q ss_pred             ceeeEeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+|| +|+  +.|++|.+|+.+|.++++.++.|+. + +||++|.|+.||+|.|++++..... .....
T Consensus         7 i~~~~~~~v~~itln~rp~--~~Nal~~~~~~~L~~al~~~~~d~~-r-~vvltg~g~~F~aG~Dl~~~~~~~~-~~~~~   81 (261)
T 2gtr_A            7 IVVRKQDGFTHILLSTKSS--ENNSLNPEVMREVQSALSTAAADDS-K-LVLLSAVGSVFCCGLDFIYFIRRLT-DDRKR   81 (261)
T ss_dssp             EEEEEETTEEEEEECCSSS--STTEECHHHHHHHHHHHHHHHHSSC-S-CEEEEESSSCSBCEECHHHHHHHHH-HCHHH
T ss_pred             EEEEEeCCEEEEEECCCCc--cCCCCCHHHHHHHHHHHHHHhcCCC-E-EEEEecCCCccccccCchhhhhccc-cchhh
Confidence            678899999999999 687  8999999999999999999999874 8 9999999999999999998754211 11112


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  158 (261)
T 2gtr_A           82 ESTKMAEAIRNFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEK-AWFQTPYTTFGQ-SPDGCSTVMFPKIMG-  158 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCTTTTTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeEeeHHHHHHHhCCEEEEcCC-CEEeCchhccCC-CccchHHHHHHHHcC-
Confidence            23344556778889999999999999999999999999999999999988 899999999999 67766 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++.....
T Consensus       159 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  224 (261)
T 2gtr_A          159 GASANEMLLSGRKLTAQEACGKGLVSQVFWP-GTFTQEVMVRIKELASCN--PVVLEESKALVRCNMKM  224 (261)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCcccccCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999998 889999999999999998  99999999999875443

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=100.00  E-value=8.4e-50  Score=341.41  Aligned_cols=214  Identities=18%  Similarity=0.252  Sum_probs=189.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+|+.+|.++++.+++|++++ +||+||.| ++||+|.|++++...........
T Consensus        11 i~~~~~~~va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~   86 (287)
T 3gkb_A           11 LRVSSEHGVARIILDNP---PVNVIGATMMRELRTVLTTLADDSSVR-VIVFSSADPEFFLAHVDMRIGEKMDALQELAA   86 (287)
T ss_dssp             EEEEEETTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSEEECCBCTTGGGSHHHHHHHHH
T ss_pred             EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHcCCCee-EEEEecCCCCceeCCcCHHHHhhccccchhhH
Confidence            67899999999999999   679999999999999999999999999 99999998 89999999998753100000000


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEec-CCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRR-DKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~-~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||+++ + ++|++||+++|+ +|++| +++|++++|
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG  164 (287)
T 3gkb_A           87 SAPADVNVFQAVGELIRHQPQVTIVKLAGKARGGGAEFVAAADMAFAAAET-AGLGQIEALMGI-IPGGGGTQYLRGRVG  164 (287)
T ss_dssp             TSCTTCCTTHHHHHHHHHCSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECGGGGGTS-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEeCCC-cEEECcccccCC-CCCchHHHHHHHHhC
Confidence            0112234467889999999999999999999999999999999999998 6 899999999999 67775 789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                       ..+++++++||++++|+||+++||||+|+++ +++.+++.++|++|+..|  |.+++.+|+.++..
T Consensus       165 -~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~~  227 (287)
T 3gkb_A          165 -RNRALEVVLTADLFDAETAASYGWINRALPA-DELDEYVDRVARNIAALP--DGVIEAAKRSLPAD  227 (287)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--TTHHHHHHHHSCCC
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCCcEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcc
Confidence             9999999999999999999999999999998 899999999999999999  99999999998763

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=100.00  E-value=1.5e-49  Score=338.54  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=187.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|+.||+|.|++++..... ......
T Consensus        11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~   86 (276)
T 2j5i_A           11 VKVEIEDGIAFVILNRPE--KRNAMSPTLNREMIDVLETLEQDPAAG-VLVLTGAGEAWTAGMDLKEYFREVD-AGPEIL   86 (276)
T ss_dssp             EEEEEETEEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTEE-EEEEEESTTCSBCCBCHHHHHHHHH-HSCTTH
T ss_pred             EEEEEeCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCCcCCcChhhHhhccc-cchhHH
Confidence            678899999999999997  899999999999999999999999999 9999999999999999998743110 000111


Q ss_pred             HHHHHHhHHHH-HHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           82 LLYMVESFRPV-VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~~-~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...+......+ +.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        87 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  163 (276)
T 2j5i_A           87 QEKIRREASQWQWKLLRMYAKPTIAMVNGWCFGGGFSPLVACDLAICADE-ATFGLSEINWGI-PPGNLVSKAMADTVG-  163 (276)
T ss_dssp             HHHHHHHHHHHHTTTTTTCSSCEEEEECSCEEGGGHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCTTHHHHHHHHSC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehhHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCcchHHHHHHHHhC-
Confidence            12222223343 67789999999999999999999999999999999988 899999999999 67766 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++..
T Consensus       164 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~  226 (276)
T 2j5i_A          164 HRQSLMYIMTGKTFGGQKAAEMGLVNESVPL-AQLREVTIELARNLLEKN--PVVLRAAKHGFKRC  226 (276)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcccHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHH
Confidence            9999999999999999999999999999997 899999999999999999  99999999999764

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=100.00  E-value=7.4e-49  Score=331.33  Aligned_cols=210  Identities=21%  Similarity=0.315  Sum_probs=189.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.+++++++.|++++ +||++|.|+.||+|.|++++... .    .. 
T Consensus         7 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~-~----~~-   77 (258)
T 2pbp_A            7 IAARQEGAVGIIELARPD--VLNALSRQMVAEIVAAVEAFDRNEKVR-VIVLTGRGRAFAAGADIQEMAKD-D----PI-   77 (258)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCCCHHHHHTC-C----HH-
T ss_pred             EEEEeeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCccCCcCHHHHhcc-c----ch-
Confidence            567889999999999997  789999999999999999999999999 99999999999999999987642 1    11 


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+ +++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        78 ~~~~~~~~-~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  153 (258)
T 2pbp_A           78 RLEWLNQF-ADWDRLSIVKTPMIAAVNGLALGGGFELALSCDLIVASSA-AEFGFPEVNLGV-MPGAGGTQRLTKLIG-P  153 (258)
T ss_dssp             HHHHHCTT-HHHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             hHHHHHHH-HHHHHHHhCCCCEEEEEcCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCcccHHHHHHHHhC-H
Confidence            12222334 6788899999999999999999999999999999999988 899999999999 77776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       154 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  217 (258)
T 2pbp_A          154 KRALEWLWTGARMSAKEAEQLGIVNRVVSP-ELLMEETMRLAGRLAEQP--PLALRLIKEAVQKAVD  217 (258)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCccCHHHHHHcCCcceeeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999998 899999999999999998  9999999999987544

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=100.00  E-value=2.9e-49  Score=336.00  Aligned_cols=213  Identities=22%  Similarity=0.311  Sum_probs=193.9

Q ss_pred             ceeeEeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++++ +|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++....   .+..
T Consensus        15 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~---~~~~   87 (272)
T 3qk8_A           15 LRFEPGEHGVLNLVLDSP---GLNSVGPQMHRDLADVWPVIDRDPDVR-VVLVRGEGKAFSSGGSFELIDETI---GDYE   87 (272)
T ss_dssp             EEEEECSTTEEEEEECCH---HHHEECHHHHHHHHHHHHHHHHCTTCS-EEEEEESSSCSBCEECHHHHHHHH---HCHH
T ss_pred             EEEEEeCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCeeCCcCHHHHhccc---cchH
Confidence            6788876 8999999999   699999999999999999999999999 999999999999999999886531   1123


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        88 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  164 (272)
T 3qk8_A           88 GRIRIMREARDLVLNLVNLDKPVVSAIRGPAVGAGLVVALLADISVASAT-AKIIDGHTKLGV-AAGDHAAICWPLLVG-  164 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEEHHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CSCSSHHHHTHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECchhccCC-CCCccHHHHHHHHhC-
Confidence            34456667889999999999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++|+..|  +.++..+|+.++....
T Consensus       165 ~~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  229 (272)
T 3qk8_A          165 MAKAKYYLLTCETLSGEEAERIGLVSTCVDD-DEVLPTATRLAENLAQGA--QNAIRWTKRSLNHWYR  229 (272)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCcEeeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  9999999999986543

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.2e-49  Score=336.93  Aligned_cols=209  Identities=21%  Similarity=0.275  Sum_probs=191.3

Q ss_pred             ceeeEeCC-EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGD-VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~-v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++ |++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.....    ..
T Consensus        11 i~~~~~~~gv~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~   83 (263)
T 3moy_A           11 IATSRPVAGVGLIRLDRPD--ALNALNQTLEAEVLDAARDFDADLEIG-AIVVTGSERAFAAGADIAEMVTLTP----HQ   83 (263)
T ss_dssp             EEEECCSTTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEEESBCHHHHTTCCH----HH
T ss_pred             EEEEEeCCeEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCeeCCcChHHHhccCc----hh
Confidence            67888888 9999999997  789999999999999999999999999 9999999999999999999865311    11


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                         .+...++.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        84 ---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  157 (263)
T 3moy_A           84 ---ARERNLLSGWDSLTQVRKPIVAAVAGYALGGGCELAMLCDLVIAADT-ARFGQPEITLGI-LPGLGGTQRLTRAVG-  157 (263)
T ss_dssp             ---HHHTTTTHHHHHHTTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCSSSTTTHHHHHHC-
T ss_pred             ---HHHHHHHHHHHHHHhCCCCEEEEECCEeehHHHHHHHHCCEEEecCC-CEEeCcccccCC-CCchhHHHHHHHHhC-
Confidence               22445677889999999999999999999999999999999999988 899999999999 77765 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++...
T Consensus       158 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  221 (263)
T 3moy_A          158 KAKAMDLCLTGRSLTAEEAERVGLVSRIVPA-ADLLDEALAVAQRIARMS--RPAGRAVKDAINEAF  221 (263)
T ss_dssp             HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEecCc-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998 889999999999999999  999999999998654

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.2e-48  Score=331.15  Aligned_cols=209  Identities=20%  Similarity=0.305  Sum_probs=190.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec-CCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS-HGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g-~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+++.+|.++++.++.|++++ +||++| .|+.||+|.|++++..  . .  . 
T Consensus        11 i~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~--~-~--~-   80 (265)
T 2ppy_A           11 LTVFKEDGIAEIHLHIN---KSNSYDLEFYKEFNAAIDDIRFDPDIK-VVIVMSDVPKFFSAGADINFLRS--A-D--P-   80 (265)
T ss_dssp             EEEEEETTEEEEEECSS---TTCCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEECSTTEEECCBCHHHHTT--S-C--H-
T ss_pred             EEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEEcCCCCeeeeCcCHHHHhc--c-c--h-
Confidence            67889999999999999   899999999999999999999999999 999999 8999999999998754  1 1  1 


Q ss_pred             HHHHHHHhH-HHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCc-ceeecccccCCCCchhh-HHHHHHHh
Q 041046           81 RLLYMVESF-RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKG-VLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        81 ~~~~~~~~~-~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~-~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ....+...+ ++++.++.++||||||+|||+|+|||++|+++||+||++++ + +|++||+++|+ +|++| +++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-ag~f~~pe~~~Gl-~p~~g~~~~l~~~v  158 (265)
T 2ppy_A           81 RFKTQFCLFCNETLDKIARSPQVYIACLEGHTVGGGLEMALACDLRFMGDE-AGKIGLPEVSLGV-LAGTGGTQRLARLI  158 (265)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHTSSEEEEETT-CCCEECCGGGGTC-CCTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCCEEEEECCEEeeHHHHHHHhCCEEEEeCC-CCEEECcccccCC-CCCchHHHHHHHHh
Confidence            122334456 78889999999999999999999999999999999999988 7 99999999999 78776 68999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       159 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  223 (265)
T 2ppy_A          159 G-YSRALDMNITGETITPQEALEIGLVNRVFPQ-AETRERTREYARKLANSA--TYAVSNIKLAIMNGK  223 (265)
T ss_dssp             C-HHHHHHHHHHCCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             C-HHHHHHHHHhCCccCHHHHHHCCCcceecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhh
Confidence            9 9999999999999999999999999999998 899999999999999998  999999999987653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=100.00  E-value=1.5e-48  Score=333.12  Aligned_cols=221  Identities=16%  Similarity=0.172  Sum_probs=191.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc-----
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA-----   76 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~-----   76 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||+||.|++||+|.|++++.......     
T Consensus        11 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~   87 (280)
T 1pjh_A           11 ISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKYP   87 (280)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CCS
T ss_pred             eEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCccCCcCHHHHhhcccccccchh
Confidence            678899999999999997  899999999999999999999999999 999999999999999999875321100     


Q ss_pred             chH-HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEe-cCCcceeecccccCCCCchhh-HHHH
Q 041046           77 GAR-ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMR-RDKGVLYMSEVDIGATLPDYF-TALF  153 (243)
Q Consensus        77 ~~~-~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~p~~g-~~~l  153 (243)
                      ... .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++ ++ ++|++||+++|+ +|++| +++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~~ia~~~~-a~f~~pe~~lGl-~p~~g~~~~l  165 (280)
T 1pjh_A           88 SETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDK-VYLLYPFANLGL-ITEGGTTVSL  165 (280)
T ss_dssp             SHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTT-CEEECCHHHHTC-CCCTTHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCCEEEEeCCC-CEEeCchhhcCC-CCCccHHHHH
Confidence            000 1112223344678899999999999999999999999999999999999 77 899999999999 67776 6899


Q ss_pred             HHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCCh----HHHHHHHH-HHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          154 RAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSE----EQVAEASM-RLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~----~~l~~~a~-~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++| ..+++++++||++++|+||+++||||+|+++.    +++.+++. +++++++..|  |.++..+|+.++.....
T Consensus       166 ~r~vG-~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~~~~~~l~~~a~~~~a~~la~~~--~~a~~~~K~~l~~~~~~  242 (280)
T 1pjh_A          166 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID  242 (280)
T ss_dssp             HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred             HHHhC-HHHHHHHHHhCCCCCHHHHHHCCCcceeeCCccccHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhHHH
Confidence            99999 99999999999999999999999999999984    37888885 9999999998  99999999999876544


Q ss_pred             Hh
Q 041046          229 VL  230 (243)
Q Consensus       229 ~~  230 (243)
                      .+
T Consensus       243 ~l  244 (280)
T 1pjh_A          243 AF  244 (280)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=7.7e-49  Score=336.06  Aligned_cols=215  Identities=20%  Similarity=0.309  Sum_probs=191.3

Q ss_pred             ceeeEeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+|| +|+  +.|++|.+|+.+|.++++.++.|+. + +||+||.|+.||+|.|++++..... .....
T Consensus        25 v~~~~~~~v~~itln~rp~--~~Nal~~~m~~~L~~al~~~~~d~~-r-~vVltg~G~~FcaG~Dl~~~~~~~~-~~~~~   99 (291)
T 2fbm_A           25 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEIVNALNSAAADDS-K-LVLFSAAGSVFCCGLDFGYFVKHLR-NNRNT   99 (291)
T ss_dssp             EEEEECSSEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHSSC-S-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred             EEEEEeCCEEEEEECCCCC--CCCCCCHHHHHHHHHHHHHHhcCCC-e-EEEEECCCCCccCCcCHHHHHhccc-ccchh
Confidence            678899999999999 697  8899999999999999999998875 8 9999999999999999998754211 11112


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-  176 (291)
T 2fbm_A          100 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG-  176 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCCEEEEeCC-CEEECcHHhcCC-CCcccHHHHHHHHHh-
Confidence            23344556778889999999999999999999999999999999999988 899999999999 67766 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..+++++++||++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       177 ~~~A~el~ltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  241 (291)
T 2fbm_A          177 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--PIVLEECKALVRCNIK  241 (291)
T ss_dssp             HHHHHHHHTSCCEEEHHHHHHTTSCSEEECS-TTSHHHHHHHHHHHTTSC--HHHHHHHHHHHHTTTH
T ss_pred             HHHHHHHHHcCCccCHHHHHHCCCcceecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999998 899999999999999998  9999999999986543

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=100.00  E-value=3e-49  Score=336.57  Aligned_cols=209  Identities=20%  Similarity=0.292  Sum_probs=188.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++.....    .. 
T Consensus        27 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~-   98 (278)
T 3h81_A           27 ILVERDQRVGIITLNRPQ--ALNALNSQVMNEVTSAATELDDDPDIG-AIIITGSAKAFAAGADIKEMADLTF----AD-   98 (278)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEECCSSEEECCBCSHHHHTCCH----HH-
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhCCCeE-EEEEECCCCCeecCcCHHHHhccCh----hh-
Confidence            678999999999999997  789999999999999999999999999 9999999999999999999875311    11 


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                        .+.......+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        99 --~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~p~~g~~~~L~r~vG-~  173 (278)
T 3h81_A           99 --AFTADFFATWGKLAAVRTPTIAAVAGYALGGGCELAMMCDVLIAADT-AKFGQPEIKLGV-LPGMGGSQRLTRAIG-K  173 (278)
T ss_dssp             --HHHHTTTGGGHHHHTCCSCEEEEECBEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC-H
T ss_pred             --HHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHHCCEEEEcCC-CEEECchhhcCc-CCCccHHHHHHHHhC-H
Confidence              11222222378899999999999999999999999999999999988 899999999999 67765 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+..|  |.++..+|+.++...
T Consensus       174 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  236 (278)
T 3h81_A          174 AKAMDLILTGRTMDAAEAERSGLVSRVVPA-DDLLTEARATATTISQMS--ASAARMAKEAVNRAF  236 (278)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 889999999999999999  999999999988654

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=100.00  E-value=1.5e-48  Score=329.65  Aligned_cols=214  Identities=18%  Similarity=0.243  Sum_probs=192.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-CCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-GKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+|+.+|.+++++++.|++++ +||++|. |++||+|.|++++... +    ..
T Consensus         7 v~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~g~~F~aG~Dl~~~~~~-~----~~   77 (260)
T 1sg4_A            7 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR-S----PA   77 (260)
T ss_dssp             EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC-C----HH
T ss_pred             EEEEecCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCceEcCcCHHHHhcc-C----HH
Confidence            45677789999999999   679999999999999999999999999 9999999 7999999999987531 1    22


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEe--cCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMR--RDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~--~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++  ++ ++|++||+++|+ +|++| +++|++++
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~v  155 (260)
T 1sg4_A           78 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADNPR-YCIGLNETQLGI-IAPFWLKDTLENTI  155 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECCTT-CCBSCCGGGGTC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEEecCCC-CEEeCchhhhCC-CCchhHHHHHHHHh
Confidence            334455667889999999999999999999999999999999999999  66 899999999999 67766 68999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHh
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                      | ..++++++++|+.++|+||+++||||+|++. +++.+++.++|++++..|  |.++..+|+.++......+
T Consensus       156 G-~~~a~~llltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  224 (260)
T 1sg4_A          156 G-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRL  224 (260)
T ss_dssp             C-HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHcCCCCEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhccH
Confidence            9 9999999999999999999999999999987 889999999999999998  9999999999987655443

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=100.00  E-value=8e-49  Score=334.06  Aligned_cols=218  Identities=17%  Similarity=0.283  Sum_probs=192.7

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc--ch
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA--GA   78 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~--~~   78 (243)
                      |.+++ +++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.|++||+|.|++++.......  .+
T Consensus         5 v~~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~   81 (275)
T 1dci_A            5 IQVTSAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDD   81 (275)
T ss_dssp             EEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSS
T ss_pred             EEEEEcCCCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcChHHHhhcccccccch
Confidence            56787 5789999999997  799999999999999999999999999 999999999999999999876421000  01


Q ss_pred             ----HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHH
Q 041046           79 ----RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALF  153 (243)
Q Consensus        79 ----~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l  153 (243)
                          .....++...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l  159 (275)
T 1dci_A           82 VARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRL  159 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHG
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCCEEEEeCC-CEEeCcccccCC-CCCccHHHHH
Confidence                1223344556778899999999999999999999999999999999999988 899999999999 67776 6899


Q ss_pred             HHHhCCH-HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          154 RAKVGSA-TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       154 ~~~~g~~-~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++| . .+++++++||++++|+||+++||||+|+++.+++.+++.++|++++..|  |.++..+|+.++....
T Consensus       160 ~r~vG-~~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~  231 (275)
T 1dci_A          160 PKVIG-NRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSRD  231 (275)
T ss_dssp             GGTCS-CHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHhC-cHHHHHHHHHcCCCCCHHHHHHcCCcceecCChHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhcc
Confidence            99999 8 9999999999999999999999999999876789999999999999999  9999999999987543

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=100.00  E-value=2.3e-48  Score=331.73  Aligned_cols=215  Identities=18%  Similarity=0.239  Sum_probs=188.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+++|.++++.++.|+++  +||++|.|+.||+|.|++++..... ......
T Consensus        28 i~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~v--~vVltg~g~~FcaG~Dl~~~~~~~~-~~~~~~  102 (280)
T 2f6q_A           28 LVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEEK  102 (280)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSCS--EEEEEESTTCSBCCBCC----CCCT-THHHHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHhhCCCE--EEEEeCCCCCcccCCCHHHHhhcCc-chhhHH
Confidence            578899999999999997  89999999999999999999999997  6899999999999999998764211 111111


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus       103 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  179 (280)
T 2f6q_A          103 AKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-P  179 (280)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-H
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCeeehHHHHHHHhCCEEEECCC-cEEECchHhhCC-CCcccHHHHHHHHhC-H
Confidence            2334456778889999999999999999999999999999999999988 899999999999 67766 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       180 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  243 (280)
T 2f6q_A          180 AKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKRER  243 (280)
T ss_dssp             HHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGH
T ss_pred             HHHHHHHHcCCCCCHHHHHHCCCcceEECH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999998 889999999999999998  9999999999987543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=100.00  E-value=9.9e-49  Score=331.52  Aligned_cols=213  Identities=24%  Similarity=0.310  Sum_probs=191.3

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++ +++|++|+||+|   +.|++|.+|+.+|.++++.++.|++++ +||++|.|+.||+|.|++ +....  ..+.+
T Consensus        12 v~~~~~~~~v~~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~~~--~~~~~   84 (264)
T 1wz8_A           12 LAFAWPRPGVLEITFRGE---KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFG-LIEEM--RASHE   84 (264)
T ss_dssp             EEEEEEETTEEEEEECCS---GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHH-HHHHH--HHCHH
T ss_pred             EEEEEccCCEEEEEeCCC---CcCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCCCcccCccc-ccccc--ccchH
Confidence            56788 999999999999   699999999999999999999999999 999999999999999999 65410  00112


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        85 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  161 (264)
T 1wz8_A           85 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG-  161 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCEEEEECCeeechhHHHHHhCCEEEecCC-CEEeCchhhcCc-CCCccHHHHHHHHhC-
Confidence            22344556788899999999999999999999999999999999999988 899999999999 67765 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++....
T Consensus       162 ~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  226 (264)
T 1wz8_A          162 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWYR  226 (264)
T ss_dssp             HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCceeecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999987 889999999999999998  9999999999987654

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=100.00  E-value=1e-48  Score=331.56  Aligned_cols=208  Identities=19%  Similarity=0.225  Sum_probs=188.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHH---hcccccch
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQ---AAGSRAGA   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~---~~~~~~~~   78 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.   .... .. 
T Consensus         7 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~-~~-   81 (266)
T 3fdu_A            7 LNANLEGGVLTLAINRPE--AKNALYGELYLWIAKALDEADQNKDVR-VVVLRGAEHDFTAGNDMKDFMGFVQNPN-AG-   81 (266)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHHHHHHSCC-CS-
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeECCcCHHHHhhhccccc-hh-
Confidence            678999999999999997  799999999999999999999999999 999999999999999999887   3211 10 


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      .    .....+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus        82 ~----~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v  155 (266)
T 3fdu_A           82 P----AGQVPPFVLLKSAARLSKPLIIAVKGVAIGIGVTILLQADLVFADNT-ALFQIPFVSLGL-SPEGGASQLLVKQA  155 (266)
T ss_dssp             C----GGGSHHHHHHHHHHHCCSCEEEEECSEEETHHHHGGGGCSEEEECTT-CEEECCTTTTTC-CCCTTHHHHHHHHH
T ss_pred             h----HHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcchHHHHHHHHh
Confidence            0    12234567888999999999999999999999999999999999988 899999999999 67776 68999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|+.++|+||+++||||+|++   ++.+++.++|++++..|  |.++..+|+.++...
T Consensus       156 G-~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~---~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  218 (266)
T 3fdu_A          156 G-YHKAAELLFTAKKFNAETALQAGLVNEIVE---DAYATAQATAQHLTALP--LASLKQTKALMKHDL  218 (266)
T ss_dssp             C-HHHHHHHHHHCCEECHHHHHHTTSCSEECS---CHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTTH
T ss_pred             C-HHHHHHHHHhCCCcCHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            9 999999999999999999999999999998   69999999999999999  999999999998653

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=100.00  E-value=4e-49  Score=335.55  Aligned_cols=213  Identities=17%  Similarity=0.267  Sum_probs=185.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec-----CC-CccccCCChhhHHhcccc
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS-----HG-KFFSNGLDLAWAQAAGSR   75 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g-----~g-~~F~~G~dl~~~~~~~~~   75 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||+||     .| +.||+|.|++++..... 
T Consensus        12 v~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~-   87 (275)
T 4eml_A           12 ILYYKAGGIAKIVINRPH--KRNAFRPQTVFELYDAFCNAREDNRIG-VVLLTGAGPHSDGKYAFCSGGDQSVRGEGGY-   87 (275)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTSCCEEECCBCCC--------
T ss_pred             EEEEEECCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCcCcCCCCceeCCcChhhhhcccc-
Confidence            678999999999999997  789999999999999999999999999 999999     88 59999999998754111 


Q ss_pred             cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHH
Q 041046           76 AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRA  155 (243)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~  155 (243)
                         ..........+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|+++|++
T Consensus        88 ---~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl~p~~~g~~~L~r  163 (275)
T 4eml_A           88 ---IDDQGTPRLNVLDLQRLIRSMPKVVIALVAGYAIGGGHVLHLVCDLTIAADN-AIFGQTGPKVGSFDGGFGSSYLAR  163 (275)
T ss_dssp             ----------CCCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHH
T ss_pred             ---cchhhHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCCCCCccHHHHHHH
Confidence               1111111123577888999999999999999999999999999999999988 899999999998445566899999


Q ss_pred             HhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          156 KVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       156 ~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ++| ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+..|  |.+++.+|+.++...
T Consensus       164 ~vG-~~~A~~llltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  230 (275)
T 4eml_A          164 IVG-QKKAREIWYLCRQYSAQEAERMGMVNTVVPV-DRLEEEGIQWAKEILSKS--PLAIRCLKAAFNADC  230 (275)
T ss_dssp             HHC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred             HhH-HHHHHHHHHhCCCcCHHHHHHcCCccEeeCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999 9999999999999999999999999999998 889999999999999999  999999999998653

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=100.00  E-value=3.3e-49  Score=332.74  Aligned_cols=208  Identities=21%  Similarity=0.320  Sum_probs=186.6

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++...        
T Consensus        10 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vvltg~g~~F~aG~Dl~~~~~~--------   78 (256)
T 3pe8_A           10 VLLVDTTDRVRTLTLNRPQ--SRNALSAELRSTFFRALSDAQNDDDVD-VVIVTGADPVFCAGLDLKELGDT--------   78 (256)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEESTTCSBCCBCTTTC-----------
T ss_pred             cEEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCccCCcCHHHHhhh--------
Confidence            3678999999999999997  789999999999999999999999999 99999999999999999987641        


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                            ..+..+..++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        79 ------~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  149 (256)
T 3pe8_A           79 ------TELPDISPKWPDMTKPVIGAINGAAVTGGLELALYCDILIASEN-AKFADTHARVGL-MPTWGLSVRLPQKVG-  149 (256)
T ss_dssp             ------------CCCCCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCSSHHHHHHHHHC-
T ss_pred             ------HHHHHHHHHHHhCCCCEEEEECCeeechHHHHHHhCCEEEEcCC-CEEECchhhhCC-CCcccHHHHHHHhcC-
Confidence                  11233457788999999999999999999999999999999988 899999999999 67776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.+++.+|+.++......++
T Consensus       150 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~~~~~~  218 (256)
T 3pe8_A          150 VGLARRMSLTGDYLSAQDALRAGLVTEVVAH-DDLLTAARRVAASIVGNN--QKAVRALLDSYHRIDALQTG  218 (256)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSCEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCCeEEeCH-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcCCHH
Confidence            9999999999999999999999999999998 899999999999999999  99999999999876554433

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.5e-50  Score=338.16  Aligned_cols=216  Identities=20%  Similarity=0.226  Sum_probs=190.8

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++..... ...  
T Consensus        13 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~l~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~--   86 (258)
T 3lao_A           13 RVTREQRGHLFLIGLDRAG--KRNAFDSAMLADLALAMGEYERSEESR-CAVLFAHGEHFTAGLDLMELAPKLA-ASG--   86 (258)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCBCHHHHGGGCB-TTB--
T ss_pred             eEEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCCeecCcCHHHHhhccc-hhh--
Confidence            3678999999999999997  789999999999999999999999999 9999999999999999999865321 110  


Q ss_pred             HHHHHHHhHHHHHHHH-hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAM-MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l-~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                        ..+...+.+++.++ .++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        87 --~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG  162 (258)
T 3lao_A           87 --FRYPDGGVDPWGVVQPRRSKPLVVAVQGTCWTAGIELMLNADIAVAARG-TRFAHLEVLRGI-PPLGGSTVRFPRAAG  162 (258)
T ss_dssp             --CCCCTTCCCTTSCSSSCCCSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGTCC-CSSCCCCSHHHHHHC
T ss_pred             --HHHHHHHHHHHHHHHHhCCCCEEEEECCEeEhHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHhC
Confidence              11122334566788 8999999999999999999999999999999988 899999999999 78776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHh
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  |.++..+|+.++......+
T Consensus       163 -~~~A~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  230 (258)
T 3lao_A          163 -WTDAMRYILTGDEFDADEALRMRLLTEVVEP-GEELARALEYAERIARAA--PLAVRAALQSAFQGRDEGD  230 (258)
T ss_dssp             -HHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTC---
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHcCCCcEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCH
Confidence             9999999999999999999999999999998 889999999999999999  9999999999987644333

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=100.00  E-value=1.7e-48  Score=332.48  Aligned_cols=216  Identities=16%  Similarity=0.249  Sum_probs=187.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++............
T Consensus        22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~   98 (279)
T 3t3w_A           22 IDYDVSDRIATITLNRPE--AANAQNPELLDELDAAWTRAAEDNDVS-VIVLRANGKHFSAGHDLRGGGPVPDKLTLEFI   98 (279)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSCSBCCBCCC--------CCHHHH
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceeeccChHhhhhcccccchHHH
Confidence            678999999999999997  799999999999999999999999999 99999999999999999987653211121222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+.+++.++.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.++..+ ++++| ..
T Consensus        99 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~~~~~~~~-~~~vG-~~  174 (279)
T 3t3w_A           99 YAHESRRYLEYSLRWRNVPKPSIAAVQGRCISGGLLLCWPCDLIIAAED-ALFSDPVVLMDI-GGVEYHGH-TWELG-PR  174 (279)
T ss_dssp             HHHHHHHTHHHHHHHHHCSSCEEEEECSEEEGGGHHHHTTSSEEEEETT-CEEECCGGGGTC-SSCSSCCH-HHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEhHHHHHHHHhCCEEEecCC-CEEeCcHHhcCC-CCchHHHH-HhhcC-HH
Confidence            3333455677889999999999999999999999999999999999988 899999999999 55554434 99999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      ++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  +.+++.+|+.++....
T Consensus       175 ~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  237 (279)
T 3t3w_A          175 KAKEILFTGRAMTAEEVAQTGMVNRVVPR-DRLDAETRALAGEIAKMP--PFALRQAKRAVNQTLD  237 (279)
T ss_dssp             HHHHHHHHCCCEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCccCHHHHHHCCCCcEeeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999998 899999999999999999  9999999999987653

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=100.00  E-value=2.2e-48  Score=330.01  Aligned_cols=218  Identities=20%  Similarity=0.315  Sum_probs=187.5

Q ss_pred             ceee----EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccc
Q 041046            2 CTLE----KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAG   77 (243)
Q Consensus         2 i~~~----~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~   77 (243)
                      +.++    ++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++........
T Consensus         9 v~~~~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~   85 (267)
T 3oc7_A            9 VDYAGPAATGGPVARLTLNSPH--NRNALSTALVSQLHQGLRDASSDPAVR-VVVLAHTGGTFCAGADLSEAGSGGSPSS   85 (267)
T ss_dssp             EEEECHHHHSSSEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEECSSEEECCBC-----------C
T ss_pred             cCCCCccceeCCEEEEEecCCC--ccCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCceeCCcCchhhhhccCchh
Confidence            4666    78999999999997  789999999999999999999999999 9999999999999999998762111011


Q ss_pred             hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      ......++...+++++.++.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++++ +
T Consensus        86 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~-~  162 (267)
T 3oc7_A           86 AYDMAVERAREMAALMRAIVESRLPVIAAIDGHVRAGGFGLVGACDIAVAGPR-SSFALTEARIGV-APAIISLTLLP-K  162 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHTT-T
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCeecccchHHHHHCCEEEEcCC-CEEeCcccccCC-CcchhHHHHHH-H
Confidence            11223356677889999999999999999999999999999999999999988 899999999999 78877 57888 9


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      +| ..++++++++|++++|+||+++||||+|  . +++.+++.++|+++++.|  |.++..+|+.++......++
T Consensus       163 vG-~~~A~~l~ltg~~~~a~eA~~~GLv~~v--~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  231 (267)
T 3oc7_A          163 LS-ARAAARYYLTGEKFDARRAEEIGLITMA--A-EDLDAAIDQLVTDVGRGS--PQGLAASKALTTAAVLERFD  231 (267)
T ss_dssp             SC-HHHHHHHHHHCCCBCHHHHHHHTSSSEE--C-SSHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             hC-HHHHHHHHHcCCccCHHHHHHCCChhhh--h-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCCHH
Confidence            99 9999999999999999999999999999  4 689999999999999999  99999999999877654443

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=100.00  E-value=7.6e-49  Score=332.41  Aligned_cols=209  Identities=17%  Similarity=0.207  Sum_probs=183.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++ ...    .  .. 
T Consensus        11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~-~~~----~--~~-   79 (265)
T 3rsi_A           11 LLVERDGPVVILTMNRPH--RRNALSTNMVSQFAAAWDEIDHDDGIR-AAILTGAGSAYCVGGDLS-DGW----M--VR-   79 (265)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC-----------------
T ss_pred             EEEEEECCEEEEEEcCcc--cccCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCCC-ccc----c--cc-
Confidence            678999999999999997  789999999999999999999999999 999999999999999998 221    1  11 


Q ss_pred             HHHHHHhHHH-HHHHH-h--cCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           82 LLYMVESFRP-VVAAM-M--DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        82 ~~~~~~~~~~-~~~~l-~--~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      ...+....++ ++.++ .  ++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|+++
T Consensus        80 ~~~~~~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~  157 (265)
T 3rsi_A           80 DGSAPPLDPATIGKGLLLSHTLTKPLIAAVNGACLGGGCEMLQQTDIRVSDEH-ATFGLPEVQRGL-VPGAGSMVRLKRQ  157 (265)
T ss_dssp             -----CCCHHHHHHHTTSSCCCSSCEEEEECSCEETHHHHHHTTCSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHH
T ss_pred             hHHHHHHhHHHHHHHHHHhcCCCCCEEEEECCeeeHHHHHHHHHCCEEEecCC-CEEECchhccCC-CCCccHHHHHHHH
Confidence            1233334456 88888 8  999999999999999999999999999999988 899999999999 67776 7899999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      +| ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       158 vG-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  224 (265)
T 3rsi_A          158 IP-YTKAMEMILTGEPLTAFEAYHFGLVGHVVPA-GTALDKARSLADRIVRNG--PLAVRNAKEAIVRSGW  224 (265)
T ss_dssp             SC-HHHHHHHHHHCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTT
T ss_pred             hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhc
Confidence            99 9999999999999999999999999999998 889999999999999999  9999999999987543

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=100.00  E-value=8.7e-49  Score=335.43  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=186.2

Q ss_pred             ceeeEe-CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLEKH-GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~~-~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.++++ ++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||+||.| ++||+|.|++++.....   ..
T Consensus        29 v~~~~~~~~va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~~FcaG~Dl~~~~~~~~---~~  102 (289)
T 3t89_A           29 IRYEKSTDGIAKITINRPQ--VRNAFRPLTVKEMIQALADARYDDNIG-VIILTGAGDKAFCSGGDQKVRGDYGG---YK  102 (289)
T ss_dssp             EEEEEETTSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCCC------------
T ss_pred             EEEEEecCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCCCccCCCChhhhhcccc---ch
Confidence            678898 999999999997  789999999999999999999999999 99999999 59999999998754211   01


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      .........+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+.+|++|+++|++++| 
T Consensus       103 ~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl~~~~~g~~~L~r~vG-  180 (289)
T 3t89_A          103 DDSGVHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADN-AIFGQTGPKVGSFDGGWGASYMARIVG-  180 (289)
T ss_dssp             -------CTHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTCCCCSTTTHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHHHHHcCCCCEEEEECCEeehHHHHHHHhCCEEEEeCC-CEEeccccccCCCCCchHHHHHHHhcC-
Confidence            111122234677889999999999999999999999999999999999988 899999999997456677899999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++|+..|  +.+++.+|+.++...
T Consensus       181 ~~~A~~llltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~--~~a~~~~K~~l~~~~  244 (289)
T 3t89_A          181 QKKAREIWFLCRQYDAKQALDMGLVNTVVPL-ADLEKETVRWCREMLQNS--PMALRCLKAALNADC  244 (289)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCcccHHHHHHCCCceEeeCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999998 899999999999999999  999999999998653

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=100.00  E-value=1.6e-49  Score=341.42  Aligned_cols=220  Identities=21%  Similarity=0.254  Sum_probs=182.1

Q ss_pred             ceeeEeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhc--ccccch
Q 041046            2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAA--GSRAGA   78 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~--~~~~~~   78 (243)
                      |.+++++ +|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++...  ......
T Consensus        31 v~~~~~~~~Va~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~  107 (298)
T 3qre_A           31 VLYEATPGGVAIITFNRAD--RLNAWGPDLAAGFYAAIDRAEADPGIR-VIVLTGRGRGFCAGAYLGSADAAAGYDKTMA  107 (298)
T ss_dssp             EEEEECTTSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSEECC----------------
T ss_pred             EEEEEeCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCcccCcCHHHHhhccccccccc
Confidence            6788999 99999999997  789999999999999999999999999 99999999999999999987641  110000


Q ss_pred             H-HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           79 R-ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        79 ~-~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      . .....+....+.++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|+++
T Consensus       108 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~  185 (298)
T 3qre_A          108 KAKDANLADLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALMCDVRFAAAG-AKFAAVFARRGL-IAEFGISWILPRL  185 (298)
T ss_dssp             -------------CCTTGGGGSSSCEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECCCCHHHH-HCTTSHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhhCCEEEEcCC-CEEECcccccCC-CcchhHHHHHHHh
Confidence            0 011222333456778899999999999999999999999999999999988 899999999999 67775 7899999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhHHHHHh
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                      +| ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+.. |  |.+++.+|+.++......+
T Consensus       186 vG-~~~A~ellltg~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~la~~~~--p~a~~~~K~~l~~~~~~~l  256 (298)
T 3qre_A          186 TS-WAVALDLLLSGRTFLAEEAAQLGLVKEVVTP-EQLMPRALEYAEDIARYCS--PSSMAVIKRQVYGDATRDV  256 (298)
T ss_dssp             SC-HHHHHHHHHHCCEEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGGC--
T ss_pred             cC-HHHHHHHHHcCCCCCHHHHHHcCCCeEecCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHhhhcCCH
Confidence            99 9999999999999999999999999999998 89999999999999998 8  9999999999987654433

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=100.00  E-value=3e-48  Score=327.16  Aligned_cols=215  Identities=18%  Similarity=0.264  Sum_probs=193.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||+||.|+.||+|.|++++... +    ...
T Consensus        18 i~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~-~----~~~   89 (257)
T 1szo_A           18 IRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNLG-T----PHD   89 (257)
T ss_dssp             EEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCCS-S----HHH
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCCccccCcCchhhhcC-C----HHH
Confidence            678999999999999997  899999999999999999999999999 99999999999999999986421 1    222


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceee-cccccCCCCchhh-HHHHHHHhCC
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM-SEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~-pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+++++.++.++||||||+|||+|+| |++|+++||+||++++ ++|++ ||+++|+ +|++| ++++++++| 
T Consensus        90 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G-G~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~l~r~vG-  165 (257)
T 1szo_A           90 WDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG-  165 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHcCCCcEEEEECCchHH-HHHHHHHCCEEEEeCC-CEEecCccccccc-CCCccHHHHHHHHcC-
Confidence            23344556788899999999999999999995 9999999999999988 89999 9999999 67776 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.+++.+|+.+++.....++
T Consensus       166 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  234 (257)
T 1szo_A          166 SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVME  234 (257)
T ss_dssp             HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence            9999999999999999999999999999987 899999999999999999  99999999999887665554

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=1.2e-49  Score=337.43  Aligned_cols=216  Identities=21%  Similarity=0.225  Sum_probs=190.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++.....    . .
T Consensus        11 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~-~   82 (265)
T 3swx_A           11 LRIRRDGYVLVIGLNRPA--KRNAFDKTMLEELALALGEYETDTDLR-AAVLYGEGPLFTAGLDLASVAAEIQ----G-G   82 (265)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCHHHHHHHHC-------
T ss_pred             EEEEEECCEEEEEECCCc--ccCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCCcccCcChHHHhhccc----c-h
Confidence            678999999999999997  789999999999999999999999999 9999999999999999998865211    0 0


Q ss_pred             HHHHHHhHHHHHHHH-hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           82 LLYMVESFRPVVAAM-MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l-~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...+...+.+++.++ .++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-  159 (265)
T 3swx_A           83 ASLTPEGGINPWQVDGRQLSKPLLVAVHGKVLTLGIELALAADIVIADET-ATFAQLEVNRGI-YPFGGATIRFPRTAG-  159 (265)
T ss_dssp             CCCCCTTCCCTTCCSSCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTS-CCCSSHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHHHHHhCCCCEEEEEcCeeehHHHHHHHHCCEEEEcCC-CEEECccccccc-CCCccHHHHHHHHhh-
Confidence            011112234456677 8999999999999999999999999999999988 899999999999 77776 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++......++
T Consensus       160 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~~~~  228 (265)
T 3swx_A          160 WGNAMRWMLTADTFDAVEAHRIGIVQEIVPV-GEHVDTAIAIAQTIARQA--PLGVQATLRNARLAVREGDA  228 (265)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEEST-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHcCCcCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhhcCCHH
Confidence            9999999999999999999999999999998 889999999999999999  99999999999876554433

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=100.00  E-value=2.4e-48  Score=339.02  Aligned_cols=215  Identities=20%  Similarity=0.260  Sum_probs=187.9

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccc----
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAG----   77 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~----   77 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++........    
T Consensus        37 i~~e~~~~Va~ItLnrP~--~~NAl~~~m~~eL~~al~~~~~d~~vr-vvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~  113 (333)
T 3njd_A           37 MTYEVTDRVARITFNRPE--KGNAIVADTPLELSALVERADLDPDVH-VILVSGRGEGFCAGFDLSAYAEGSSSAGGGSP  113 (333)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCTHHHHHHHHHHHHHHHCTTCC-EEEEEESTTSSBCCBC---------------C
T ss_pred             EEEEEECCEEEEEeCCCC--ccCCCCHHHHHHHHHHHHHHhhCCCcE-EEEEECCCCceecCcCHHHHhhcccccccccc
Confidence            788999999999999997  899999999999999999999999999 9999999999999999998764211000    


Q ss_pred             ---------------------hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceee
Q 041046           78 ---------------------ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM  136 (243)
Q Consensus        78 ---------------------~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~  136 (243)
                                           +.....++...+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~rias~~-a~f~~  192 (333)
T 3njd_A          114 YEGTVLSGKTQALNHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHADQVIAAAD-AKIGY  192 (333)
T ss_dssp             CTTSTTCHHHHHHTTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEECTT-CEEEC
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCCEEEECCC-Ceeec
Confidence                                 00022345666788889999999999999999999999999999999999988 89999


Q ss_pred             cccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHH
Q 041046          137 SEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYA  216 (243)
Q Consensus       137 pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~  216 (243)
                      ||+++|+ +|++|  ++++++| ..++++|+++|+.++|+||+++||||+|++. +++.+++.++|++|+..|  +.++.
T Consensus       193 pe~~lG~-~P~~g--~l~~~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~ia~~~--~~al~  265 (333)
T 3njd_A          193 PPMRVWG-VPAAG--LWAHRLG-DQRAKRLLFTGDCITGAQAAEWGLAVEAPDP-ADLDARTERLVERIAAMP--VNQLI  265 (333)
T ss_dssp             GGGGTTC-CCTTC--CHHHHHC-HHHHHHHHTTCCEEEHHHHHHTTSSSBCCCG-GGHHHHHHHHHHHHHTSC--HHHHH
T ss_pred             hhhceec-cCHHH--HHHHHHH-HHHHHHHHhcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHcCC--HHHHH
Confidence            9999999 78877  6899999 9999999999999999999999999999998 899999999999999999  99999


Q ss_pred             HHHHHhhhHHH
Q 041046          217 EIRKSLYPDLC  227 (243)
Q Consensus       217 ~~K~~l~~~~~  227 (243)
                      .+|+.++....
T Consensus       266 ~~K~~l~~~~~  276 (333)
T 3njd_A          266 MAKLACNTALL  276 (333)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=100.00  E-value=1.5e-48  Score=326.67  Aligned_cols=210  Identities=19%  Similarity=0.333  Sum_probs=189.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      ..++++++|++|+||+|+  +.|++|.+|+++|.+++++++.|++++ +||++|.|+.||+|.|++++.....  .+.  
T Consensus         5 ~~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~--~~~--   77 (243)
T 2q35_A            5 QLTELGNGVVQITMKDES--SRNGFSPSIVEGLRHCFSVVAQNQQYK-VVILTGYGNYFSSGASKEFLIRKTR--GEV--   77 (243)
T ss_dssp             EEEEEETTEEEEEECCGG--GTSBSCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECBSCHHHHHHHHT--TCC--
T ss_pred             EEEEeeCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCeeCCCChHHHhhccc--hhh--
Confidence            356789999999999997  899999999999999999999999999 9999999999999999998754211  000  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                            ..++++.++.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .
T Consensus        78 ------~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-~  148 (243)
T 2q35_A           78 ------EVLDLSGLILDCEIPIIAAMQGHSFGGGLLLGLYADFVVFSQE-SVYATNFMKYGF-TPVGATSLILREKLG-S  148 (243)
T ss_dssp             ------CCCCCHHHHHTCCSCEEEEECSEEETHHHHHHHTSSEEEEESS-SEEECCHHHHTS-CCCSSHHHHHHHHHC-H
T ss_pred             ------HHHHHHHHHHhCCCCEEEEEcCccccchHHHHHhCCEEEEeCC-CEEECCccccCC-CCcchHHHHHHHHhC-H
Confidence                  1256778899999999999999999999999999999999988 899999999999 67776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHh
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++......+
T Consensus       149 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~  215 (243)
T 2q35_A          149 ELAQEMIYTGENYRGKELAERGIPFPVVSR-QDVLNYAQQLGQKIAKSP--RLSLVALKQHLSADIKAKF  215 (243)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTCSSCEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHcCCCCEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhhcCH
Confidence            999999999999999999999999999987 899999999999999998  9999999999987654443

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=100.00  E-value=1.3e-48  Score=330.89  Aligned_cols=209  Identities=15%  Similarity=0.181  Sum_probs=185.6

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.| +++ +||+||.|+.||+|.|++++..... +  ...
T Consensus         9 i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~--~~~   81 (267)
T 3hp0_A            9 IKVRFQASVCYITFHRPE--ANNTINDTLIEECLQVLNQCETS-TVT-VVVLEGLPEVFCFGADFQEIYQEMK-R--GRK   81 (267)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCSHHHHHHHHHHHHHHHS-SCC-EEEEECCSSCSBCCBCHHHHHHTTT-T--TCC
T ss_pred             EEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHhcC-CCE-EEEEECCCCceecCcCHHHHHhccc-C--hHH
Confidence            678999999999999997  78999999999999999999986 699 9999999999999999999875311 0  000


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      ...+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|+++|++++| ..
T Consensus        82 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~l~r~vG-~~  158 (267)
T 3hp0_A           82 QASSQEPLYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATDIAIADQT-ASFSLSELLFGL-YPACVLPFLIRRIG-RQ  158 (267)
T ss_dssp             SCCCCHHHHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCTTTHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCCEEEEcCC-CEEECchhccCc-CchhHHHHHHHHhC-HH
Confidence            1122345677889999999999999999999999999999999999988 899999999999 79989899999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++++++|++++|+||+++||||+|+++.+   +.+.+++++++..|  |.+++.+|+.++..
T Consensus       159 ~A~ellltg~~i~A~eA~~~GLV~~vv~~~~---~~~~~~a~~la~~~--p~a~~~~K~~l~~~  217 (267)
T 3hp0_A          159 KAHYMTLMTKPISVQEASEWGLIDAFDAESD---VLLRKHLLRLRRLN--KKGIAHYKQFMSSL  217 (267)
T ss_dssp             HHHHHHHHCCCBCHHHHHHHTSSSCBCSCTT---HHHHHHHHHHTTSC--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCHHHHHHCCCcceecCCHH---HHHHHHHHHHHhCC--HHHHHHHHHHHHhc
Confidence            9999999999999999999999999998633   34778999999999  99999999998764

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=100.00  E-value=2.1e-49  Score=335.09  Aligned_cols=209  Identities=23%  Similarity=0.266  Sum_probs=186.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||+||.|+.||+|.|++++..........  
T Consensus        13 v~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~--   87 (262)
T 3r9q_A           13 VRVEKAGPVTTVILNRPH--ARNAVDGPTAAALLAAFTEFDADPEAS-VAVLWGDNGTFCAGADLKAMGTDRGNELHP--   87 (262)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCTTTTTSTTSCCCCT--
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccCCcCHHHHhccChhhHHH--
Confidence            678999999999999997  789999999999999999999999999 999999999999999999876421100000  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                           .....++..+.++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        88 -----~~~~~~~~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-~  159 (262)
T 3r9q_A           88 -----HGPGPMGPSRLRLSKPVIAAISGHAVAGGIELALWCDLRVVEED-AVLGVFCRRWGV-PLIDGGTIRLPRLIG-H  159 (262)
T ss_dssp             -----TSSCTTSSTTCCCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECTHHHHTC-CCCSSHHHHHHHHHC-H
T ss_pred             -----hhhhHHHHHHHhCCCCEEEEECCeeehhhhHHHHhCCEEEEeCC-CEEecchhccCC-CCCccHHHHHHHHhC-H
Confidence                 11223444567999999999999999999999999999999988 899999999999 67765 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      .++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.+++.+|+.++...
T Consensus       160 ~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~~~~~~  222 (262)
T 3r9q_A          160 SRAMDLILTGRPVHANEALDIGLVNRVVAR-GQAREAAETLAAEIAAFP--QQCVRADRDSAIAQW  222 (262)
T ss_dssp             HHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCcCCHHHHHHcCCccEecCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhh
Confidence            999999999999999999999999999998 889999999999999999  999999999998654

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=100.00  E-value=1.8e-48  Score=329.37  Aligned_cols=216  Identities=15%  Similarity=0.214  Sum_probs=194.1

Q ss_pred             ceeeEeC-CEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHG-DVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~-~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++++ +|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|.|++++....+    ..
T Consensus        25 i~~~~~~~~Va~ItLnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~FcaG~Dl~~~~~~~~----~~   97 (263)
T 2j5g_A           25 LHFHRDENGILEVRMHTNG--SSLVFTGKTHREFPDAFYDISRDRDNR-VVILTGSGDAWMAEIDFPSLGDVTN----PR   97 (263)
T ss_dssp             EEEEECTTCEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTEEECEECSGGGCCTTS----HH
T ss_pred             EEEEEcCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCcccCcCHHHHhccCC----HH
Confidence            6788888 99999999997  899999999999999999999999999 9999999999999999998753211    22


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceee-cccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM-SEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~-pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ....+...+++++.++.++||||||+|||+|+ ||++|+++||+||++++ ++|++ ||+++|+ +|++| +++|++++|
T Consensus        98 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~-GG~~LalacD~ria~~~-a~f~~~pe~~lGl-~p~~g~~~~L~r~vG  174 (263)
T 2j5g_A           98 EWDKTYWEGKKVLQNLLDIEVPVISAVNGAAL-LHSEYILTTDIILASEN-TVFQDMPHLNAGI-VPGDGVHILWPLALG  174 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCSCEEEEECSEEC-SCGGGGGGCSEEEEETT-CEECCCHHHHHTC-CCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCcch-HHHHHHHhCCEEEEcCC-CEEecCccccccc-CCCccHHHHHHHHcC
Confidence            23344455678899999999999999999999 59999999999999988 89999 9999999 67776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  |.++..+|+.++......++
T Consensus       175 -~~~A~~llltG~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  243 (263)
T 2j5g_A          175 -LYRGRYFLFTQEKLTAQQAYELNVVHEVLPQ-SKLMERAWEIARTLAKQP--TLNLRYTRVALTQRLKRLVN  243 (263)
T ss_dssp             -HHHHHHHHHTTCCEEHHHHHHTTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCccEecCh-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhhhccHH
Confidence             9999999999999999999999999999998 899999999999999998  99999999999887665544

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=100.00  E-value=5.1e-49  Score=335.63  Aligned_cols=211  Identities=20%  Similarity=0.256  Sum_probs=177.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++++++|++++ +||++|.|+.||+|.|++++.....    ...
T Consensus        22 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~----~~~   94 (278)
T 4f47_A           22 ALVEQRGHTLIVTMNRPS--RRNALSGEMMQIMVEAWDRVDNDPDIR-CCILTGAGGYFCAGMDLKAATKKPP----GDS   94 (278)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCC--------------------
T ss_pred             eEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhcCCCee-EEEEECCCCcccCCcChHhhhccch----hhh
Confidence            678999999999999997  789999999999999999999999999 9999999999999999998765311    111


Q ss_pred             HHHHHHhHHHHHHHHh---cCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           82 LLYMVESFRPVVAAMM---DLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~---~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ... ...+..++..+.   ++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus        95 ~~~-~~~~~~~~~~l~~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~v  171 (278)
T 4f47_A           95 FKD-GSYDPSRIDALLKGRRLKKPLIAAVEGPAIAGGTEILQGTDIRVAAES-AKFGISEAKWSL-YPMGGSAVRLVRQI  171 (278)
T ss_dssp             -------CTTCBTTTTBSCCCSSCEEEEECSEEETHHHHHHTTCSEEEEETT-CEEECCGGGGTC-CCTTSHHHHHHHHS
T ss_pred             HHH-HHHHHHHHHHHHHhcCCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHh
Confidence            111 112344556667   999999999999999999999999999999988 899999999999 67776 78999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  +.++..+|+.++...
T Consensus       172 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  236 (278)
T 4f47_A          172 P-YTVACDLLLTGRHITAAEAKEMGLVGHVVPD-GQALTKALEIAEIIAANG--PLAVQAILRTIRETE  236 (278)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHTT
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHCCCceEeeCh-hHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhc
Confidence            9 9999999999999999999999999999998 889999999999999999  999999999998754

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=100.00  E-value=7e-48  Score=324.55  Aligned_cols=207  Identities=19%  Similarity=0.266  Sum_probs=188.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++. ++++ +||++|.|++||+|.|++++...    . ...
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~-~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~-~~~   79 (254)
T 3isa_A            9 LAIERRPAAWTFTLSRPE--KRNALSAELVEALIDGVDAAHR-EQVP-LLVFAGAGRNFSAGFDFTDYETQ----S-EGD   79 (254)
T ss_dssp             EEEEECSSEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHH-TTCS-EEEEEESTTCSCCCBCCTTCTTS----C-HHH
T ss_pred             EEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHhhc-CCcE-EEEEECCCCceeeCcChHHhhcc----C-chh
Confidence            678999999999999997  7999999999999999999987 5899 99999999999999999987642    1 122


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSAT  161 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~  161 (243)
                      .......+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|  |+++|++++| ..
T Consensus        80 ~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p--g~~~l~~~vG-~~  154 (254)
T 3isa_A           80 LLLRMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPE-AGFRMPGLKFGL-VL--GTRRFRDIVG-AD  154 (254)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CC--SHHHHHHHHC-HH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCEEEEECCeEeecchhHHHhCCEEEEcCC-CEEECchhccCc-cH--HHHHHHHHcC-HH
Confidence            2333445788999999999999999999999999999999999999988 899999999999 67  6899999999 99


Q ss_pred             HHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          162 ARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       162 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++++++++|++++|+||+++||||+|+++ +++.+++.++++++++.|  +.+++.+|+.+...
T Consensus       155 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~  215 (254)
T 3isa_A          155 QALSILGSARAFDADEARRIGFVRDCAAQ-AQWPALIDAAAEAATALD--PATRATLHRVLRDD  215 (254)
T ss_dssp             HHHHHHTTTCEEEHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTSC--HHHHHHHHHHHSCC
T ss_pred             HHHHHHHhCCCCcHHHHHHCCCccEEeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHhhh
Confidence            99999999999999999999999999998 899999999999999999  99999999998644

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=100.00  E-value=2.2e-49  Score=337.29  Aligned_cols=216  Identities=18%  Similarity=0.236  Sum_probs=184.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch--H
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA--R   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~--~   79 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.+++|++++ +||++|.|++||+|.|++++........+  .
T Consensus        13 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~   89 (274)
T 3tlf_A           13 IKYEVDGHTATITLNRPD--ALNALSPHMITELRAAYHEAENDDRVW-LLVVTGTGRAFCSGADVKEIPEDGKVIYERPY   89 (274)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBC--------------CT
T ss_pred             eEEEEECCEEEEEECCcc--ccCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEeCCCCCcccCcCHHHHhhccccccccch
Confidence            678999999999999996  789999999999999999999999999 99999999999999999987642110000  0


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      ....+....+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|.+++++|++++| 
T Consensus        90 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~g~~~~L~r~vG-  166 (274)
T 3tlf_A           90 LSTYDQWEAPQEGTPPFRTMAKPVLTAVNGICCGAGMDWVTTTDIVIASEQ-ATFFDPHVSIGL-VAGRELVRVSRVLP-  166 (274)
T ss_dssp             TCSGGGGSCCCTTCCCTTSCCSCEEEEECSEEEGGGHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCHHHHHHTTTSC-
T ss_pred             hhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCEEEEcCC-CEEECcccccCc-ccchHHHHHHHHhC-
Confidence            000111223466778899999999999999999999999999999999988 899999999999 78445789999999 


Q ss_pred             HHHHHHHHhccC--CCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          160 ATARRDVLLRAK--KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       160 ~~~a~~l~l~g~--~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      ..++++++++|+  .++|+||+++||||+|+++ +++.+++.++|++++..|  +.+++.+|+.++...
T Consensus       167 ~~~A~~l~ltg~~~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  232 (274)
T 3tlf_A          167 RSIALRMALMGKHERMSAQRAYELGLISEIVEH-DRLLERAHEIADIVNSNA--PLAVRGTRLAILKGL  232 (274)
T ss_dssp             HHHHHHHHHHGGGCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHCCCCCeecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            999999999999  9999999999999999998 899999999999999999  999999999998764

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=100.00  E-value=1.6e-49  Score=336.48  Aligned_cols=215  Identities=25%  Similarity=0.329  Sum_probs=191.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.+++|++++ +||++|.|+.||+|.|++++..... ...   
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~---   81 (265)
T 3qxz_A            9 LHEEIRDGVAVLTLHGPS--TRNSFTVELGRQLGAAYQRLDDDPAVR-VIVLTGAPPAFCSGAQISAAAETFA-APR---   81 (265)
T ss_dssp             EEEEEETTEEEEEEECGG--GTSCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTEEECCBCSTTCTTCCC-CCC---
T ss_pred             EEEEEECCEEEEEEcCCc--cCCCCCHHHHHHHHHHHHHHhhCCCce-EEEEECCCCccccCcChHHHhhccc-hhH---
Confidence            678999999999999997  789999999999999999999999999 9999999999999999998765311 100   


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                       ..+... ++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        82 -~~~~~~-~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  156 (265)
T 3qxz_A           82 -NPDFSA-SPVQPAAFELRTPVIAAVNGHAIGIGMTLALHADIRILAEE-GRYAIPQVRFGV-APDALAHWTLPRLVG-T  156 (265)
T ss_dssp             -SSCCCS-CCSSSCGGGSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CCEECCGGGGTS-CCCTTHHHHTHHHHH-H
T ss_pred             -HHHHHH-HHHHHHHHhCCCCEEEEECCEEehHhHHHHHHCCEEEEcCC-CEEECcccccCc-CCCccHHHHHHHHhC-H
Confidence             011122 56777889999999999999999999999999999999988 899999999999 67776 689999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC-CCChhHHHHHHHHhhhHHHHHhc
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR-KWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~-~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      .++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++.. |  |.++..+|+.++......++
T Consensus       157 ~~A~~l~ltg~~~~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~~--p~a~~~~K~~l~~~~~~~l~  225 (265)
T 3qxz_A          157 AVAAELLLTGASFSAQRAVETGLANRCLPA-GKVLGAALRMAHDIATNVA--PESAALTKRLLWDAQMTGMS  225 (265)
T ss_dssp             HHHHHHHHHCCCBCHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCCCcCHHHHHHCCCccEeeCH-HHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHhhcCCHH
Confidence            999999999999999999999999999998 89999999999999999 9  99999999999887655433

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=100.00  E-value=6.4e-48  Score=330.08  Aligned_cols=211  Identities=20%  Similarity=0.261  Sum_probs=189.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC-ccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~-~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|   +.|++|.+|+.+|.++++.++.|++++ +||++|.|+ +||+|.|++++....     ..
T Consensus        10 v~~~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~G~~ff~~G~Dl~~~~~~~-----~~   80 (289)
T 3h0u_A           10 IKARLDGTVLSATFNAP---PMNLIGPEVVRDLVALLEELAHPTAPR-VVIFDSADADFFFPHVDMTKVPEYT-----AE   80 (289)
T ss_dssp             EEEEEETTEEEEEECCT---TTCCBCHHHHHHHHHHHHHTTSTTSCS-EEEEEECSSSEEECSBCTTCHHHHH-----HH
T ss_pred             EEEEEECCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHhcCCCce-EEEEECCCCCceeCCcCHHHHhhcC-----cc
Confidence            67899999999999999   679999999999999999999999999 999999985 566778999876521     11


Q ss_pred             HHH---HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           81 RLL---YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        81 ~~~---~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                      ...   .+...+++++.++.++||||||+|||+|+|||++|+++||+||++++.++|++||+++|+ +|++| +++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~~a~f~~pe~~lGl-~p~~g~~~~L~r~  159 (289)
T 3h0u_A           81 AAKAGGPGDASLGMLFRKLSQLPAVTIAKLRGRARGAGSEFLLACDMRFASRENAILGQPEVGIGA-PPGAGAIQHLTRL  159 (289)
T ss_dssp             HHTTSSTTCCSHHHHHHHHHTCSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECTHHHHTS-CCCSSHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEeehhhHHHHHhCCEEEEeCCCcEEeCchhhcCC-CCCccHHHHHHHH
Confidence            111   334567889999999999999999999999999999999999999864799999999999 67775 7899999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +| ..++++++++|++++|+||+++||||+|+|+ +++.+++.++|+++++.|  |.++..+|+.++...
T Consensus       160 vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~lA~~la~~~--p~a~~~~K~~l~~~~  225 (289)
T 3h0u_A          160 LG-RGRALEAVLTSSDFDADLAERYGWVNRAVPD-AELDEFVAGIAARMSGFP--RDALIAAKSAINAIS  225 (289)
T ss_dssp             HC-HHHHHHHHHHCCCEEHHHHHHHTSSSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHH
T ss_pred             hC-HHHHHHHHHcCCCCCHHHHHHCCCccEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhhc
Confidence            99 9999999999999999999999999999997 899999999999999999  999999999998764

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=100.00  E-value=4.5e-48  Score=336.42  Aligned_cols=215  Identities=17%  Similarity=0.287  Sum_probs=186.1

Q ss_pred             ceeeEe--CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC-------ccccCCChhhHHhc
Q 041046            2 CTLEKH--GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGK-------FFSNGLDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~--~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~-------~F~~G~dl~~~~~~   72 (243)
                      |.++++  ++|++|+||+|+  +.|++|.+++.+|.++|+.++.|++++ +|||||.|+       .||+|.|++++...
T Consensus        57 i~~~~~~~~gVa~ItlnrP~--~~NAl~~~~~~eL~~al~~~~~d~~vr-vVVltG~G~~~~~~~~~FcaG~Dl~~~~~~  133 (334)
T 3t8b_A           57 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS  133 (334)
T ss_dssp             EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCSCTTTTC--
T ss_pred             EEEEEeccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCCCCcCCCCCcccCCCCHHHhhcc
Confidence            567776  899999999997  789999999999999999999999999 999999995       89999999876421


Q ss_pred             cc--ccc----hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEe-cCCcceeecccccCCCC
Q 041046           73 GS--RAG----ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMR-RDKGVLYMSEVDIGATL  145 (243)
Q Consensus        73 ~~--~~~----~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~-~~~~~f~~pe~~~Gl~~  145 (243)
                      ..  ...    ...........+.+++.++.++||||||+|||+|+|||++|+++||+|||+ ++ ++|++||+++|+ +
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~A~GgG~~LalacD~riAs~~~-A~f~~pe~~lGl-~  211 (334)
T 3t8b_A          134 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREY-ARFKQTDADVGS-F  211 (334)
T ss_dssp             --------------------CCHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTT-CEEECCCTTCSS-S
T ss_pred             cccccccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEEEECCccccCcchhHhhCCEEEEeCCC-cEEECcccccCC-C
Confidence            00  000    001111223345678889999999999999999999999999999999999 87 899999999999 6


Q ss_pred             chhh-HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhh
Q 041046          146 PDYF-TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYP  224 (243)
Q Consensus       146 p~~g-~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~  224 (243)
                      |++| +++|++++| ..+|++++++|+.++|+||+++||||+|++. +++.+++.++|++|+..|  |.+++.+|+.++.
T Consensus       212 p~~gg~~~L~r~vG-~~~A~ellltG~~i~A~eA~~~GLV~~vv~~-~~l~~~a~~~A~~ia~~~--p~a~~~~K~~l~~  287 (334)
T 3t8b_A          212 DGGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNL  287 (334)
T ss_dssp             SCCSCHHHHHHHHH-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHhh-HHHHHHHHHhCCcCCHHHHHHCCCCcEecCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHh
Confidence            7665 889999999 9999999999999999999999999999998 899999999999999999  9999999999986


Q ss_pred             H
Q 041046          225 D  225 (243)
Q Consensus       225 ~  225 (243)
                      .
T Consensus       288 ~  288 (334)
T 3t8b_A          288 L  288 (334)
T ss_dssp             T
T ss_pred             h
Confidence            5

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=100.00  E-value=1.6e-48  Score=329.88  Aligned_cols=212  Identities=17%  Similarity=0.305  Sum_probs=188.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEec-CC-CccccCCChhhHHhcccccchH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTS-HG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g-~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.++++.++.|+ ++ +||++| .| +.||+|.|++++.....  . .
T Consensus         6 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~-vr-~vVltg~~g~~~F~aG~Dl~~~~~~~~--~-~   78 (261)
T 1ef8_A            6 VNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLNRPE-IR-CIILRAPSGSKVFSAGHDIHELPSGGR--D-P   78 (261)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTCSTT-CC-EEEEECCTTCSEEECCSCSTTC-------C-T
T ss_pred             EEEEEeCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHhhCC-ce-EEEEECCCCCCeeecCcChHhhhccCc--h-h
Confidence            678999999999999996  799999999999999999999999 99 999999 88 99999999998654211  0 0


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                         ..+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        79 ---~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG  153 (261)
T 1ef8_A           79 ---LSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDAG  153 (261)
T ss_dssp             ---TCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSSC
T ss_pred             ---HHHHHHHHHHHHHHHhCCCCEEEEECCEEEeHhHHHHHhCCEEEecCC-CEEeCchhccCC-CCCccHHHHHHHHhC
Confidence               011223577888999999999999999999999999999999999988 899999999999 67776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGV  229 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~  229 (243)
                       ..++++++++|+.++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++......
T Consensus       154 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~  220 (261)
T 1ef8_A          154 -FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLGEAH  220 (261)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHcCCccCHHHHHHCCCcccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHhhcCC
Confidence             9999999999999999999999999999987 899999999999999999  999999999998765433

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=100.00  E-value=2.8e-48  Score=328.07  Aligned_cols=209  Identities=21%  Similarity=0.307  Sum_probs=185.0

Q ss_pred             ceeeE---eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccch
Q 041046            2 CTLEK---HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGA   78 (243)
Q Consensus         2 i~~~~---~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~   78 (243)
                      |.++.   .++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|+.||+|.|++++...    ..
T Consensus         6 ~~~~~~v~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~----~~   78 (260)
T 1mj3_A            6 IITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNR----TF   78 (260)
T ss_dssp             EEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTC----CH
T ss_pred             ceeecccCcCCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCee-EEEEECCCCCccCCcChHhhhcc----cc
Confidence            44555   6789999999997  789999999999999999999999999 99999999999999999987531    11


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ..   .+...+.+.+.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus        79 ~~---~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~v  153 (260)
T 1mj3_A           79 QD---CYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRAV  153 (260)
T ss_dssp             HH---HHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHHH
T ss_pred             hH---HHHHHHHHHHHHHHhCCCCEEEEECCEEEeHHHHHHHhCCEEEEcCC-CEEeCcccccCC-CCCccHHHHHHHHh
Confidence            11   11222333467888999999999999999999999999999999988 899999999999 77776 68999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      | ..++++++++|++++|+||+++||||+|+++ +++.+++.+++++++..|  |.++..+|+.++...
T Consensus       154 G-~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~  218 (260)
T 1mj3_A          154 G-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAAF  218 (260)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGG
T ss_pred             C-HHHHHHHHHcCCcCCHHHHHHcCCccEEeCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhh
Confidence            9 9999999999999999999999999999998 889999999999999998  999999999997653

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=100.00  E-value=2.1e-47  Score=324.86  Aligned_cols=209  Identities=18%  Similarity=0.317  Sum_probs=183.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC-ccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~-~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+++++|.++++.++.|++++ +||++|.|+ +||+|.|++++..... .. ..
T Consensus        15 i~~~~~~~va~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~FcaG~Dl~~~~~~~~-~~-~~   89 (273)
T 2uzf_A           15 IKYEFYEGIAKVTINRPE--VRNAFTPKTVAEMIDAFSRARDDQNVS-VIVLTGEGDLAFCSGGDQKKRGHGGY-VG-ED   89 (273)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSEEEECCCCCC---------C-CS
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCceecCcCcHhhhcccc-ch-hh
Confidence            678889999999999997  899999999999999999999999999 999999998 9999999998743100 00 00


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...  ...+++++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        90 ~~~--~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG-  164 (273)
T 2uzf_A           90 QIP--RLNVLDLQRLIRIIPKPVIAMVKGYAVGGGNVLNVVCDLTIAADN-AIFGQTGPKVGS-FDAGYGSGYLARIVG-  164 (273)
T ss_dssp             SSC--CCTHHHHHHHHHHSSSCEEEEECEEEETHHHHHHHHSSEEEEETT-CEEECCGGGTTC-CCCSTTTHHHHHHHC-
T ss_pred             hHH--HhhHHHHHHHHHhCCCCEEEEECCEEeehhHHHHHhCCEEEEcCC-CEEECchhhhCC-CCchhHHHHHHHHhC-
Confidence            000  011456778889999999999999999999999999999999988 899999999999 67776 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhh
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLY  223 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~  223 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  +.++..+|+.++
T Consensus       165 ~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~  225 (273)
T 2uzf_A          165 HKKAREIWYLCRQYNAQEALDMGLVNTVVPL-EKVEDETVQWCKEIMKHS--PTALRFLKAAMN  225 (273)
T ss_dssp             HHHHHHHHHTCCCEEHHHHHHHTSSSEEECG-GGSHHHHHHHHHHHTTSC--HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHcCCCccccCH-HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHH
Confidence            9999999999999999999999999999987 889999999999999998  999999999987

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=100.00  E-value=4.2e-47  Score=333.08  Aligned_cols=191  Identities=17%  Similarity=0.216  Sum_probs=171.0

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++|+|++||||||+  +.|++|.+|+.+|.+++++++.|++++ +||+||.| +.||+|.|++++.....  .+..
T Consensus        11 vl~e~~~~Va~itLnrP~--~~NAl~~~m~~~l~~al~~~~~d~~vr-~vvltg~G~~~FcaG~Dl~~~~~~~~--~~~~   85 (353)
T 4hdt_A           11 VLVNVEGGVGLLTLNRPK--AINSLTHGMVTTMAERLAAWENDDSVR-AVLLTGAGERGLCAGGDVVAIYHSAK--ADGA   85 (353)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESSSSBSBCCBCHHHHHHHHH--TTSH
T ss_pred             EEEEEECCEEEEEEcCCC--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEeCCCCCEecCcCHHHHhhccc--hhhH
Confidence            678999999999999997  799999999999999999999999999 99999998 79999999998765311  1234


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...++....++++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| ++++++.+| 
T Consensus        86 ~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~f~~pe~~iGl-~p~~g~~~~l~rl~g-  162 (353)
T 4hdt_A           86 EARRFWFDEYRLNAHIGRYPKPYVSIMDGIVMGGGVGVGAHGNVRVVTDT-TKMAMPEVGIGF-IPDVGGTYLLSRAPG-  162 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECBEEETHHHHHHTTSSEEEECTT-CEEECCGGGGTC-CCCTTHHHHHHTSST-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEeECceeecCccccCCcCeeccchh-ccccCccccccc-CCCccceehhhhhhh-
Confidence            45566777889999999999999999999999999999999999999988 899999999999 78887 578887777 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLA  202 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a  202 (243)
                       ++++++++||++++|+||+++||||+|||+ +++.+.+.+++
T Consensus       163 -~~a~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~la  203 (353)
T 4hdt_A          163 -KLGLHAALTGAPFSGADAIVMGFADHYVPH-DKIDEFTRAVI  203 (353)
T ss_dssp             -THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHHHHHHHH
T ss_pred             -HHHHHHHhcCCCCCHHHHHHcCCCcEEeCH-HHHHHHHHHHH
Confidence             478999999999999999999999999998 88888876653

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=100.00  E-value=7.2e-48  Score=324.74  Aligned_cols=206  Identities=18%  Similarity=0.264  Sum_probs=184.5

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARER   81 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~   81 (243)
                      |.++++++|++|+||+|+  +.|++|.+++.+|.+++++++.|++++ +||++|.|+.||+|.|++++..... ....  
T Consensus         9 v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~--   82 (256)
T 3trr_A            9 VLIEQRDRVLLITINRPD--ARNAVNRAVSQGLAAAADQLDSSADLS-VAIITGAGGNFCAGMDLKAFVSGEA-VLSE--   82 (256)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEEGGGCCCCCBCHHHHHHTCC-CEET--
T ss_pred             eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCCeE-EEEEECCCCceecCcCHHHhccccc-hhhh--
Confidence            678999999999999997  789999999999999999999999999 9999999999999999998875321 1100  


Q ss_pred             HHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCH
Q 041046           82 LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSA  160 (243)
Q Consensus        82 ~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~  160 (243)
                       .    .+ . +..+ ++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| .
T Consensus        83 -~----~~-~-~~~~-~~~kPvIAav~G~a~GgG~~lalacD~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~  151 (256)
T 3trr_A           83 -R----GL-G-FTNV-PPRKPIIAAVEGFALAGGTELVLSCDLVVAGRS-AKFGIPEVKRGL-VAGAGGLLRLPNRIP-Y  151 (256)
T ss_dssp             -T----EE-T-TSSS-CCSSCEEEEECSBCCTHHHHHHHTSSEEEEETT-CEECCCGGGGTC-CCCSSHHHHHHHHSC-H
T ss_pred             -h----hh-h-HHHh-cCCCCEEEEECCeeeechhHHHHhCCEEEECCC-CEEEehhhccCC-CCCccHHHHHHHHhC-H
Confidence             0    01 1 2334 899999999999999999999999999999988 899999999999 67766 789999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      .++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++....
T Consensus       152 ~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  215 (256)
T 3trr_A          152 QVAMELALTGESFTAEDAAKYGFINRLVDD-GQALDTALELAAKITANG--PLAVAATKRIIIESAS  215 (256)
T ss_dssp             HHHHHHHHHCCCEEHHHHGGGTCCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCcCHHHHHHCCCeeEecCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999998 889999999999999999  9999999999987643

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=100.00  E-value=7.2e-48  Score=326.26  Aligned_cols=208  Identities=19%  Similarity=0.257  Sum_probs=179.7

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.|++++ +||++|.|+.||+|.|++++..... .....
T Consensus        16 ~v~~~~~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aG~Dl~~~~~~~~-~~~~~   91 (265)
T 3qxi_A           16 EVLVEQRDRILIITINRPK--AKNSVNAAVSRALADAMDRLDADAGLS-VGILTGAGGSFCAGMDLKAFARGEN-VVVEG   91 (265)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCCCCSBC-------CC-CEETT
T ss_pred             eEEEEEECCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEECCCCCeeCCCChhhhhccch-hhhhh
Confidence            3678999999999999997  789999999999999999999999999 9999999999999999998765321 11000


Q ss_pred             HHHHHHHhHHHH-HHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPV-VAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~-~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                               ..+ +..+.. ||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        92 ---------~~~~~~~~~~-~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~~~vG  159 (265)
T 3qxi_A           92 ---------RGLGFTERPP-AKPLIAAVEGYALAGGTELALATDLIVAARD-SAFGIPEVKRGL-VAGGGGLLRLPERIP  159 (265)
T ss_dssp             ---------TEETTTTSCC-SSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHSC
T ss_pred             ---------hhhhHHHhhC-CCCEEEEECCceeHHHHHHHHhCCEEEEcCC-CEEECcccccCc-CCcccHHHHHHHHhC
Confidence                     111 333444 9999999999999999999999999999988 899999999999 67776 789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.++.....
T Consensus       160 -~~~a~~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~~~  225 (265)
T 3qxi_A          160 -YAIAMELALTGDNLSAERAHALGMVNVLAEP-GAALDAAIALAEKITANG--PLAVAATKRIITESRGW  225 (265)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSCSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHcCCCcCHHHHHHCCCccEeeCh-hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhcC
Confidence             9999999999999999999999999999998 899999999999999999  99999999999876443

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3e-47  Score=321.75  Aligned_cols=201  Identities=23%  Similarity=0.319  Sum_probs=179.1

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      +|.++++++|++|+||+|+  +.|++|.+|+.+|.+++++++.| +++ +||++|.|+.||+|.|++....       . 
T Consensus        22 ~i~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d-~vr-~vVltg~G~~FcaG~Dl~~~~~-------~-   89 (264)
T 3he2_A           22 MIGITQAEAVLTIELQRPE--RRNALNSQLVEELTQAIRKAGDG-SAR-AIVLTGQGTAFCAGADLSGDAF-------A-   89 (264)
T ss_dssp             CEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHCC----CCS-EEEEEESSSCSBCCBCCTTCTT-------G-
T ss_pred             eEEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHhhC-Cce-EEEEECCCCCccCCcCCccchh-------h-
Confidence            4788999999999999997  79999999999999999999988 999 9999999999999999983211       0 


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                        ..+.+.+.+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        90 --~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  164 (264)
T 3he2_A           90 --ADYPDRLIELHKAMDASPMPVVGAINGPAIGAGLQLAMQCDLRVVAPD-AFFQFPTSKYGL-ALDNWSIRRLSSLVG-  164 (264)
T ss_dssp             --GGHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHHSSEEEECTT-CEEECTHHHHTC-CCCHHHHHHHHHHHC-
T ss_pred             --HHHHHHHHHHHHHHHhCCCCEEEEECCcEEcchhHHHHhCCEEEEcCC-CEEECcccccCc-CCcchHHHHHHHHhC-
Confidence              123345677888999999999999999999999999999999999988 899999999999 66655 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|++     .+++.++|+++++.|  |.+++.+|+.++..
T Consensus       165 ~~~A~~llltG~~i~A~eA~~~GLV~~v~~-----~~~a~~~A~~la~~~--p~a~~~~K~~l~~~  223 (264)
T 3he2_A          165 HGRARAMLLSAEKLTAEIALHTGMANRIGT-----LADAQAWAAEIARLA--PLAIQHAKRVLNDD  223 (264)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSCSEECC-----HHHHHHHHHHHHTSC--HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHcCCCccHHHHHHCCCeEEEec-----HHHHHHHHHHHHcCC--HHHHHHHHHHHHcc
Confidence            999999999999999999999999999986     356899999999999  99999999999875

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=100.00  E-value=3.8e-47  Score=327.71  Aligned_cols=214  Identities=20%  Similarity=0.239  Sum_probs=184.0

Q ss_pred             ceeeEeCCEEEEEEcCCCCCC----CCCCCHHHHHHHHHHHHHHHh-----CCCCCeEEEEecCCCccccCCChhhHHhc
Q 041046            2 CTLEKHGDVFVLTLTGSSDVD----EHRFGPSAIDSILSAIAKAKA-----EATPGSALITTSHGKFFSNGLDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~----~N~~~~~~~~~l~~~l~~~~~-----d~~i~~vvvl~g~g~~F~~G~dl~~~~~~   72 (243)
                      |.++++++|++|+||+|+  +    .|++|.+|+.+|.++++.++.     |++++ +||++|.|+.||+|.|++++...
T Consensus        34 v~~~~~~~V~~itLnrp~--k~n~~rpal~~~m~~eL~~al~~~~~d~~~~d~~vr-~vVltg~G~~FcaG~Dl~~~~~~  110 (305)
T 3m6n_A           34 IIEEPQRDVYWIHMHADL--AINPGRACFSTRLVDDITGYQTNLGQRLNTAGVLAP-HVVLASDSDVFNLGGDLALFCQL  110 (305)
T ss_dssp             EEEETTTTEEEEEECTTC-------CCSBCHHHHHHHHHHHHHHHHHHHHHTCSSC-EEEEEESSSSSBCCBCHHHHHHH
T ss_pred             EEEEEECCEEEEEECCcc--ccCCCCCCCCHHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCCCeecCcCHHHHHhc
Confidence            456778999999999997  7    448999999999999999987     58999 99999999999999999988653


Q ss_pred             ccccchHHHHHHHHHhHHHHHHHH---hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh
Q 041046           73 GSRAGARERLLYMVESFRPVVAAM---MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF  149 (243)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l---~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g  149 (243)
                      .. ..+......+...+.+.+..+   ..+||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++|
T Consensus       111 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAaV~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g  187 (305)
T 3m6n_A          111 IR-EGDRARLLDYAQRCVRGVHAFHVGLGARAHSIALVQGNALGGGFEAALSCHTIIAEEG-VMMGLPEVLFDL-FPGMG  187 (305)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHHHHHHTGGGTTCEEEEEECSCEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSS
T ss_pred             cc-cccHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEEECCEeehHHHHHHHhCCEEEEcCC-CEEECchhccCc-CCCcc
Confidence            11 111233334444444555444   5689999999999999999999999999999988 899999999999 67776


Q ss_pred             -HHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          150 -TALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       150 -~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                       +++|++++| ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++|+. +  |.++..+|+.++...
T Consensus       188 ~~~~L~r~vG-~~~A~~llltG~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~-~--p~a~~~~K~~l~~~~  260 (305)
T 3m6n_A          188 AYSFMCQRIS-AHLAQKIMLEGNLYSAEQLLGMGLVDRVVPR-GQGVAAVEQVIRESKR-T--PHAWAAMQQVREMTT  260 (305)
T ss_dssp             HHHHHTTTSC-HHHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHTT-C--HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhc-HHHHHHHHHcCCCCCHHHHHHCCCCCEecCh-hHHHHHHHHHHHHHhh-C--hHHHHHHHHHHHhhh
Confidence             689999999 9999999999999999999999999999998 8999999999999986 6  899999999987653

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=100.00  E-value=1e-47  Score=325.65  Aligned_cols=209  Identities=20%  Similarity=0.219  Sum_probs=183.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| +.||+|.|++++..... .....
T Consensus        11 v~~~~~~~v~~itlnrP~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~~~-~~~~~   86 (267)
T 3r9t_A           11 ALAERRGNVMVITINRPE--ARNAINAAVSIGVGDALEEAQHDPEVR-AVVLTGAGDKSFCAGADLKAIARREN-LYHPD   86 (267)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECCBCHHHHHTTCC-CSCTT
T ss_pred             EEEEEECCEEEEEEcCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCceeCCcChHHHhcccc-hhhHH
Confidence            678999999999999997  899999999999999999999999999 99999999 59999999999875322 11000


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                       ...+   ....+ ...++||||||+|||+|+|+|++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        87 -~~~~---~~~~~-~~~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~vG-  158 (267)
T 3r9t_A           87 -HPEW---GFAGY-VRHFIDKPTIAAVNGTALGGGTELALASDLVVADER-AQFGLPEVKRGL-IAAAGGVFRIAEQLP-  158 (267)
T ss_dssp             -CGGG---CGGGT-TTCCCSSCEEEEECSEECTHHHHHHHHSSEEEEETT-CEECCGGGGTTC-CCTTTHHHHHHHHSC-
T ss_pred             -HHhH---HHHHH-HHHhCCCCEEEEECCEEEhHHHHHHHhCCEEEEcCC-CEEECcccccCC-CCCccHHHHHHHHcC-
Confidence             0000   00111 224899999999999999999999999999999988 899999999999 67776 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHH---hhhH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKS---LYPD  225 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~---l~~~  225 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++++..|  |.++..+|+.   ++..
T Consensus       159 ~~~A~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~~--p~a~~~~K~~~~~l~~~  224 (267)
T 3r9t_A          159 RKVAMRLLLTGEPLSAAAARDWGLINEVVEA-GSVLDAALALASAITVNA--PLSVQASKRIAYGVDDG  224 (267)
T ss_dssp             HHHHHHHHHHCCCEEHHHHHHHTSSSEEECT-TCHHHHHHHHHHHHHTSC--HHHHHHHHHHHTTEETT
T ss_pred             HHHHHHHHHcCCCCCHHHHHHCCCccEEcCh-hHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999998 889999999999999999  9999999999   7654

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=100.00  E-value=7.5e-47  Score=321.22  Aligned_cols=206  Identities=20%  Similarity=0.339  Sum_probs=185.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~   85 (243)
                      +++|++|+||+|+  +.|++|.+++.+|.++++.++.|++++ +||++|.| +.||+|.|++++... .    ......+
T Consensus        19 ~~~v~~itlnrp~--~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~~F~aG~Dl~~~~~~-~----~~~~~~~   90 (272)
T 1hzd_A           19 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKM-S----SSEVGPF   90 (272)
T ss_dssp             GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTS-C----HHHHHHH
T ss_pred             cCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEecCCCCCCcCCCChhhhhcc-C----hHHHHHH
Confidence            6889999999997  789999999999999999999999999 99999988 799999999987542 1    2223444


Q ss_pred             HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046           86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      ...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| ..+++
T Consensus        91 ~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~vG-~~~A~  167 (272)
T 1hzd_A           91 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK  167 (272)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCceEEecHHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCchHHHHHHHHhC-HHHHH
Confidence            566788999999999999999999999999999999999999988 899999999999 67776 689999999 99999


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCChHH----HHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQ----VAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~----l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                      +++++|+.++|+||+++||||+|+++ ++    +.+++.+++++++..|  |.++..+|+.++...
T Consensus       168 ~l~ltg~~~~a~eA~~~GLv~~vv~~-~~l~~~~~~~a~~~a~~la~~~--p~a~~~~K~~l~~~~  230 (272)
T 1hzd_A          168 ELIFSARVLDGKEAKAVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGM  230 (272)
T ss_dssp             HHHHHTCEEEHHHHHHHTSCSEEECC-CTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcCCHHHHHHCCCcceecCh-hhhhHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHh
Confidence            99999999999999999999999987 55    4567889999999998  999999999997653

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=100.00  E-value=2.4e-45  Score=323.42  Aligned_cols=213  Identities=20%  Similarity=0.196  Sum_probs=183.8

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||+||.| +.||+|.|++++..... .. ..
T Consensus         8 v~~~~~~~v~~itLnrP~--~~Nal~~~m~~~L~~al~~~~~d~~vr-~vVltG~g~~~FcaG~Dl~~~~~~~~-~~-~~   82 (363)
T 3bpt_A            8 VLLGKKGCTGVITLNRPK--FLNALTLNMIRQIYPQLKKWEQDPETF-LIIIKGAGGKAFCAGGDIRVISEAEK-AK-QK   82 (363)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEETTSSEEECCBCHHHHHHHHT-SS-CC
T ss_pred             eEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCeE-EEEEECCCCCcccCCcCHHHHHhhcc-cc-cH
Confidence            678899999999999997  799999999999999999999999999 99999988 99999999998754211 00 00


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ....+.....+++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++| 
T Consensus        83 ~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD~ria~~~-a~f~~pe~~~Gl-~p~~g~~~~L~r~~g-  159 (363)
T 3bpt_A           83 IAPVFFREEYMLNNAVGSCQKPYVALIHGITMGGGVGLSVHGQFRVATEK-CLFAMPETAIGL-FPDVGGGYFLPRLQG-  159 (363)
T ss_dssp             CHHHHHHHHHHHHHHHHTCSSCEEEEECSEEETHHHHTTTTSSEEEECTT-CEEECCGGGTTS-CCCTTHHHHHHHSST-
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCEEEEECCEEehHHHHHHHhCCEEEEcCC-eEEeCCccccCC-CCCchHHHHHHHhhH-
Confidence            11223344567888999999999999999999999999999999999988 899999999999 78776 679999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHH-----------------------------------------
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS-----------------------------------------  198 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a-----------------------------------------  198 (243)
                      . +++++++||++++|+||+++||||+|+++ +++.+.+                                         
T Consensus       160 ~-~a~~l~ltg~~i~A~eA~~~GLv~~vv~~-~~l~~~~~~l~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~  237 (363)
T 3bpt_A          160 K-LGYFLALTGFRLKGRDVYRAGIATHFVDS-EKLAMLEEDLLALKSPSKENIASVLENYHTESKIDRDKSFILEEHMDK  237 (363)
T ss_dssp             T-HHHHHHHHCCCEETHHHHHTTSCSEECCG-GGHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCCTTTTCCCTTGGGHHH
T ss_pred             H-HHHHHHHcCCCCCHHHHHHCCCcceecCH-HHHHHHHHHHHhcccCCHHHHHHHHHHHHhhhcccCCCchhhHHHHHH
Confidence            6 89999999999999999999999999998 6665421                                         


Q ss_pred             ----------H---------------HHHHHHhcCCCChhHHHHHHHHhhhHH
Q 041046          199 ----------M---------------RLAKQMAGRKWAGEVYAEIRKSLYPDL  226 (243)
Q Consensus       199 ----------~---------------~~a~~la~~~~~~~~~~~~K~~l~~~~  226 (243)
                                .               +++++|++.|  |.++..+|+.++...
T Consensus       238 i~~~f~~~~~~ei~~al~~~~~~~a~~~a~~la~~s--P~al~~~k~~l~~~~  288 (363)
T 3bpt_A          238 INSCFSANTVEEIIENLQQDGSSFALEQLKVINKMS--PTSLKITLRQLMEGS  288 (363)
T ss_dssp             HHHHTTSSSHHHHHHHHHHHCCHHHHHHHHHHTTSC--HHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCHHHHHHHHhccChHHHHHHHHHHHhCC--chHHHHHHHHHHHHH
Confidence                      2               5788999998  999999999997653

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=100.00  E-value=6e-45  Score=324.96  Aligned_cols=211  Identities=20%  Similarity=0.261  Sum_probs=181.4

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--------C-CccccCCChhhHHhc
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--------G-KFFSNGLDLAWAQAA   72 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--------g-~~F~~G~dl~~~~~~   72 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +|||+|.        | +.||+|+|++++...
T Consensus       169 v~~e~~~gVa~ItLNRP~--k~NALs~~m~~eL~~al~~~~~D~~VR-vVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~  245 (440)
T 2np9_A          169 VHLERRDGVARLTMCRDD--RLNAEDGQQVDDMETAVDLALLDPGVR-VGLLRGGVMSHPRYRGKRVFSAGINLKYLSQG  245 (440)
T ss_dssp             EEEEEETTEEEEEECCTT--TTTCBCHHHHHHHHHHHHHHHHCTTCS-EEEEEECBCCSTTTTTCBCCBCCBCHHHHHTT
T ss_pred             EEEEEECCEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEcCCccccccCCCccccCCcchhhhhcc
Confidence            678899999999999997  899999999999999999999999999 9999994        6 799999999987642


Q ss_pred             ccccchHHHHHHHHHhHHHHHHHH------------hcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccc
Q 041046           73 GSRAGARERLLYMVESFRPVVAAM------------MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD  140 (243)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~l------------~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~  140 (243)
                      .. +.......+....+++++..+            .++||||||+|||+|+|||++|+++||+||++++ ++|++||++
T Consensus       246 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCDirIAae~-A~Fglpev~  323 (440)
T 2np9_A          246 GI-SLVDFLMRRELGYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFDRVLASSD-AYFSLPAAK  323 (440)
T ss_dssp             CC-CTTTTHHHHHHTHHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCSEEEEETT-CEEECCCTT
T ss_pred             Cc-chhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCCEEEEcCC-CEEECchhc
Confidence            11 100100111122345555554            4799999999999999999999999999999988 899999999


Q ss_pred             cCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 041046          141 IGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRK  220 (243)
Q Consensus       141 ~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~  220 (243)
                      +|+ +|++|+++|++++| ..++++|+++|+.|+|+||+++||||+||++ +++.+++.+++++++     +.++..+|+
T Consensus       324 lGl-~P~~g~~~L~rlvG-~~~A~ellLtG~~i~A~EA~~~GLV~~Vvp~-~eL~~~a~~~A~~la-----~~Av~~~K~  395 (440)
T 2np9_A          324 EGI-IPGAANLRLGRFAG-PRVSRQVILEGRRIWAKEPEARLLVDEVVEP-DELDAAIERSLTRLD-----GDAVLANRR  395 (440)
T ss_dssp             TCC-CCTTHHHHHHHHHH-HHHHHHHHHHCCCEETTSGGGGGTCSEEECH-HHHHHHHHHHHHTTC-----SHHHHHHHH
T ss_pred             cCc-CcchHHHHHHHHhh-HHHHHHHHHcCCCCCHHHHHHCCCCcEecCh-HHHHHHHHHHHHHhC-----HHHHHHHHH
Confidence            999 79888899999999 9999999999999999999999999999997 889999999998874     467899999


Q ss_pred             HhhhH
Q 041046          221 SLYPD  225 (243)
Q Consensus       221 ~l~~~  225 (243)
                      .++..
T Consensus       396 ~l~~~  400 (440)
T 2np9_A          396 MLNLA  400 (440)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            88764

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=100.00  E-value=2.4e-45  Score=327.02  Aligned_cols=187  Identities=17%  Similarity=0.135  Sum_probs=164.7

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhccccc--ch
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRA--GA   78 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~--~~   78 (243)
                      |.++++++|++|+||+|+  +.|++|.+|+.+|.++++.++.|++++ +||++|.| ++||+|+|++++.......  ..
T Consensus        44 v~~~~~~~V~~ItLnrP~--~~NAl~~~m~~~L~~al~~~~~d~~vr-~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~  120 (407)
T 3ju1_A           44 LATASGKLVGVVTLNVEK--ALNALDLDMVRAMTVQLNLWKKDPLIA-CVVLDGSGEKAFCAGGDVRALYHASVAAKGQV  120 (407)
T ss_dssp             EECTTSCEEEEEEECCGG--GTSCBCHHHHHHHHHHHHHHHHCTTEE-EEEEEESSSSEEECCBCCHHHHHHHHHHTSSC
T ss_pred             EEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcE-EEEEecCCCCcccCCCChhhhhhccccccccc
Confidence            567788999999999997  789999999999999999999999999 99999999 8999999999886521100  01


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                      ......+....++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++
T Consensus       121 ~~~~~~~~~~~~~l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD~ria~~~-a~f~~pe~~lGl-~P~~G~t~~L~rl~  198 (407)
T 3ju1_A          121 TEVAKVFFEEEYRLDYLLHTYGKPVLVWGDGIVMGGGLGLMAGASHKVVTET-SRIAMPEVTIGL-YPDVGGSYFLNRMP  198 (407)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCSSCEEEECCSEEETHHHHHHHHCSEEEECTT-CEEECGGGGGTC-CSCTTHHHHTTTSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCccccCcchHHhcCCEEEEcCC-CEEeChHhhcCC-CCCchHHHHHhhhh
Confidence            2334566666788999999999999999999999999999999999999988 899999999999 78776 67899988


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAE  196 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~  196 (243)
                      |  .+++++++||++++|+||+++||||+|+++ +++.+
T Consensus       199 g--~~A~~l~ltG~~i~A~eA~~~GLv~~vv~~-~~l~~  234 (407)
T 3ju1_A          199 G--KMGLFLGLTAYHMNAADACYVGLADHYLNR-DDKEL  234 (407)
T ss_dssp             T--THHHHHHHHCCCBCHHHHHHHTSCSEECCG-GGHHH
T ss_pred             H--HHHHHHHHcCCcCcHHHHHHCCCccEEcCH-HHHHH
Confidence            8  678999999999999999999999999998 66665

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=100.00  E-value=1.5e-43  Score=319.24  Aligned_cols=217  Identities=18%  Similarity=0.199  Sum_probs=187.9

Q ss_pred             ceeeEeCCEEEEEEcCCCC--------CCCCCCCHHHHHHHHHHHHHHHhC-CCCCeEEEEec-CCCccccCCChhhHHh
Q 041046            2 CTLEKHGDVFVLTLTGSSD--------VDEHRFGPSAIDSILSAIAKAKAE-ATPGSALITTS-HGKFFSNGLDLAWAQA   71 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~--------~~~N~~~~~~~~~l~~~l~~~~~d-~~i~~vvvl~g-~g~~F~~G~dl~~~~~   71 (243)
                      |.++++++|++|+||+|++        .+.|++|.+++.+|.+++++++.| ++++ +||++| .|+.||+|+|++++..
T Consensus        23 v~ve~~ggVA~ITLNRPed~~l~~g~~~k~NALs~~ml~eL~~AL~~~~~D~~~VR-aVVLTGa~G~~FcAGaDL~el~~  101 (556)
T 2w3p_A           23 WKLSFNGPVATLGIDIAEDGGIRDGYKLKLNSYDLGVDIELHDAIQRIRFEHPEVR-TVVLTSLKDRVFCSGANIFMLGL  101 (556)
T ss_dssp             EEEEEETTEEEEEECCCTTCCSSSSCCCCTTEECHHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSEEECEECHHHHHH
T ss_pred             EEEEeeCCEEEEEEecccccccccccCCCCCCCCHHHHHHHHHHHHHHHhCCCCce-EEEEeCCCCCcccCCcCHHHHhh
Confidence            5788899999999999930        147999999999999999999999 9999 999999 8999999999999865


Q ss_pred             cccccchHHHHHHHHHhHHHHHHHH----hcCCCcEEEEECcccchhHHHHHHhccEEEEecC-Ccceeecccc-cCCCC
Q 041046           72 AGSRAGARERLLYMVESFRPVVAAM----MDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRD-KGVLYMSEVD-IGATL  145 (243)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~-~~~f~~pe~~-~Gl~~  145 (243)
                      ..     ......+...+++++.++    .++||||||+|||+|+|||++|+++||+||++++ .++|++||++ +|+ +
T Consensus       102 ~~-----~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIAAVnG~AlGGGleLALACD~rIAse~~~A~FglPEv~~LGL-~  175 (556)
T 2w3p_A          102 ST-----HAWKVNFCKFTNETRNGLEDSSRHSGLKFLAAVNGACAGGGYELALACDEIYLVDDRSSSVSLPEVPLLGV-L  175 (556)
T ss_dssp             SC-----HHHHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECSEEETHHHHHHHHSSEEEEECSSSCEEECCHHHHHSS-C
T ss_pred             cc-----cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCeechhhHHHHHhCCEEEEcCCCCcEEecccccccCC-C
Confidence            21     112233445567788888    9999999999999999999999999999999977 3799999999 999 7


Q ss_pred             chhh-HHHHH--HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHh
Q 041046          146 PDYF-TALFR--AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSL  222 (243)
Q Consensus       146 p~~g-~~~l~--~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l  222 (243)
                      |++| +++++  +++| ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|++++..|  +.++.. |+.+
T Consensus       176 Pg~Ggt~rLp~~RlVG-~~rA~eLlLTGr~isA~EAl~lGLVdeVVp~-~eL~~~A~~lA~~LA~~~--p~Av~~-K~l~  250 (556)
T 2w3p_A          176 PGTGGLTRVTDKRKVR-HDRADIFCTVVEGVRGERAKAWRLVDEVVKP-NQFDQAIQARALELAAQS--DRPAHA-QGVP  250 (556)
T ss_dssp             CTTTHHHHHHHTSCCC-HHHHHHHTTCSSCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHHTTC--CCCTTC-CCCC
T ss_pred             CCccHHHHHHhhccCC-HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-hHHHHHHHHHHHHHHcCC--hHHHhh-hhhh
Confidence            8776 68999  9999 9999999999999999999999999999987 899999999999999998  766664 7666


Q ss_pred             hhHHHHHh
Q 041046          223 YPDLCGVL  230 (243)
Q Consensus       223 ~~~~~~~~  230 (243)
                      +..+.+.+
T Consensus       251 ~~~l~r~~  258 (556)
T 2w3p_A          251 LTRIERTD  258 (556)
T ss_dssp             CCCCCCEE
T ss_pred             cchhhhhh
Confidence            55544433

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=100.00  E-value=8.4e-43  Score=330.03  Aligned_cols=187  Identities=24%  Similarity=0.369  Sum_probs=170.1

Q ss_pred             eeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHH
Q 041046            4 LEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLL   83 (243)
Q Consensus         4 ~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~   83 (243)
                      ++.+|+|++||||||   +.|++|.+++.+|.+++++++.|++++ +||+||.|+.||+|+|++++.....    ..   
T Consensus        25 ~~~~~~Va~itlnrP---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg~g~~F~aGaDl~~~~~~~~----~~---   93 (742)
T 3zwc_A           25 LRLPHSLAMIRLCNP---PVNAVSPTVIREVRNGLQKAGSDHTVK-AIVICGANGNFCAGADIHGFSAFTP----GL---   93 (742)
T ss_dssp             EECSTTEEEEEECCT---TTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCSSSCCSSCS----CS---
T ss_pred             EEeeCCEEEEEeCCC---cccCCCHHHHHHHHHHHHHHhhCCCCe-EEEEECCCCccccCcChHhhhccCh----hH---
Confidence            355899999999999   789999999999999999999999999 9999999999999999998865322    11   


Q ss_pred             HHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHH
Q 041046           84 YMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATA  162 (243)
Q Consensus        84 ~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~  162 (243)
                          .+.+++.++.++||||||+|||+|+|||++|+++||+|||+++ ++|++||+++|+ +|++| +++|++++| ..+
T Consensus        94 ----~~~~~~~~i~~~~kPvIAai~G~a~GGG~elalacD~ria~~~-a~fg~pev~lGl-~Pg~ggt~rL~rlvG-~~~  166 (742)
T 3zwc_A           94 ----ALGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAK-ARVGLPEVTLGI-LPGARGTQLLPRVVG-VPV  166 (742)
T ss_dssp             ----HHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCTTTHHHHHHHHHC-HHH
T ss_pred             ----HHHHHHHHHHhCCCCEEEEECccchHHHHHHHHhcCEEEEcCC-CEEECcccCccc-CCCccHHHHHHHhhh-HHH
Confidence                2456788899999999999999999999999999999999988 899999999999 78776 789999999 999


Q ss_pred             HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCC
Q 041046          163 RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKW  210 (243)
Q Consensus       163 a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~  210 (243)
                      |++|++||+.++|++|+++||||+|++. + ..++|.++|++++.+++
T Consensus       167 A~~l~ltG~~i~a~eA~~~GLv~~vv~~-d-~~~~A~~~A~~ia~~~~  212 (742)
T 3zwc_A          167 ALDLITSGKYLSADEALRLGILDAVVKS-D-PVEEAIKFAQKIIDKPI  212 (742)
T ss_dssp             HHHHHHHCCCEEHHHHHHHTSCSEEESS-C-HHHHHHHHHHHHTTSCS
T ss_pred             HHHHHHcCCchhHHHHHHcCCccEecCc-h-hhHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999987 5 46789999999999873

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=100.00  E-value=1.5e-40  Score=315.22  Aligned_cols=198  Identities=22%  Similarity=0.333  Sum_probs=175.8

Q ss_pred             ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC-ccccCCChhhHHhcccccchH
Q 041046            2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~-~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      +.++ ++++|++|+||+|+ ++.|++|.+++.+|.+++++++.|++++ +||++| |+ .||+|+|++++.....  .+.
T Consensus         8 i~~~~~~~~va~itlnrp~-~~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~--~~~   82 (715)
T 1wdk_A            8 ITVTALESGIVELKFDLKG-ESVNKFNRLTLNELRQAVDAIKADASVK-GVIVSS-GKDVFIVGADITEFVENFK--LPD   82 (715)
T ss_dssp             EEEEECGGGEEEEEECCTT-SSSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEE-SSSSSBBCCCHHHHHHHTT--SCH
T ss_pred             EEEEEeeCCEEEEEEcCCC-CCCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCeEeCCcCHHHHhhccc--CCH
Confidence            4667 67899999999992 1379999999999999999999999999 999999 76 9999999998865211  112


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~ggt~~L~r~vG  160 (715)
T 1wdk_A           83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG  160 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEEECCEeeHHHHHHHHHCCEEEEeCC-CEEeChhhccCC-CCCccHHHHHHHHhC
Confidence            223344566788999999999999999999999999999999999999988 899999999999 78776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                       ..+|++++++|+.++|+||+++||||+|++. +++.+++.++|++++..
T Consensus       161 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  208 (715)
T 1wdk_A          161 -VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISG  208 (715)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCCceEEeCh-HHHHHHHHHHHHHHhhc
Confidence             9999999999999999999999999999987 88999999999999876

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-41  Score=320.04  Aligned_cols=196  Identities=23%  Similarity=0.316  Sum_probs=167.7

Q ss_pred             ceee-EeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCC-ccccCCChhhHHhcccccchH
Q 041046            2 CTLE-KHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGK-FFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~-~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~-~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      +.++ ++++|++|+||+|   +.|++|.+++.+|.+++++++.|++++ +||++| |+ .||+|+|++++.....  ...
T Consensus         9 i~~~~~~~~va~itlnrp---~~Nal~~~~~~~L~~al~~~~~d~~vr-~vVltg-g~~~F~aG~Dl~~~~~~~~--~~~   81 (725)
T 2wtb_A            9 TVMEVGGDGVAVITLINP---PVNSLSFDVLYNLKSNYEEALSRNDVK-AIVITG-AKGRFSGGFDISGFGEMQK--GNV   81 (725)
T ss_dssp             EEEEECTTSEEEEEEECT---TTTCCCHHHHHHHHHHHHHHTTCTTCC-EEEEEE-SSSCCBCSSCC-------------
T ss_pred             EEEEEeeCCEEEEEECCC---CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEEC-CCCcccCCcCHHHHhcccc--hhh
Confidence            5677 6789999999999   899999999999999999999999999 999999 76 9999999998754110  000


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .....+...+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~elalacD~ria~~~-a~fglpev~lGl-~P~~Ggt~~L~rlvG  159 (725)
T 2wtb_A           82 KEPKAGYISIDIITDLLEAARKPSVAAIDGLALGGGLELAMACHARISAPA-AQLGLPELQLGV-IPGFGGTQRLPRLVG  159 (725)
T ss_dssp             -CCSSSHHHHHCCCCCCCTSSSCEEEEECSEEETHHHHHHHHSSEEEECTT-CEEECCGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHHhCcCcEEEEECCccCcccHHHHHhCCEEEEcCC-CEEeCchhccCC-CCCccHHHHHHHhcC
Confidence            000112234567778889999999999999999999999999999999988 899999999999 78776 789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                       ..+|++++++|++++|+||+++||||+|+++ +++.+++.++|++++..
T Consensus       160 -~~~A~~l~ltG~~~~a~eA~~~GLv~~vv~~-~~l~~~a~~~a~~la~~  207 (725)
T 2wtb_A          160 -LTKALEMILTSKPVKAEEGHSLGLIDAVVPP-AELVTTARRWALDIVGR  207 (725)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHHTSCSEECCT-TTHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHcCCCCCHHHHHHCCccceEcCh-hHHHHHHHHHHHHHHhc
Confidence             9999999999999999999999999999987 88999999999999876

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.87  E-value=2.6e-23  Score=193.42  Aligned_cols=169  Identities=20%  Similarity=0.248  Sum_probs=138.5

Q ss_pred             eCCEEEEEEcCCCCCCCCC--CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY   84 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~--~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   84 (243)
                      +++|++|++|+|.  ..|+  ++..+.++|.++|+++..|++++ +|||++.+    .|.|+....              
T Consensus       300 ~~~VavI~l~g~i--~~n~~~~~~~~~~~l~~~L~~a~~d~~vk-aVVL~i~s----pGG~~~~~~--------------  358 (593)
T 3bf0_A          300 GDSIGVVFANGAI--MDGEETQGNVGGDTTAAQIRDARLDPKVK-AIVLRVNS----PGGSVTASE--------------  358 (593)
T ss_dssp             SCEEEEEEEEEEE--ESSSSCTTSEEHHHHHHHHHHHHHCTTEE-EEEEEEEE----EEECHHHHH--------------
T ss_pred             CCCEEEEEEeeee--cCCccccchhHHHHHHHHHHHHHhCCCCC-EEEEEecC----CCCCHHHHH--------------
Confidence            4679999999995  6777  68889999999999999999999 89999864    466765321              


Q ss_pred             HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeeccc------------ccCCCCchh----
Q 041046           85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEV------------DIGATLPDY----  148 (243)
Q Consensus        85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~------------~~Gl~~p~~----  148 (243)
                         .+.+.+.++..++|||||+|+|.|.|||+.++++||++||+++ +.|+.+++            ++|+ .|..    
T Consensus       359 ---~i~~~i~~l~~~~kPVia~v~g~AasgG~~iA~aaD~iva~p~-a~~Gsigv~~~~~~~~~~~~klGi-~~~~~~~g  433 (593)
T 3bf0_A          359 ---VIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANYIVANPS-TLTGSIGIFGVITTVENSLDSIGV-HTDGVSTS  433 (593)
T ss_dssp             ---HHHHHHHHHHHTTCCEEEEEEEEEETHHHHTTTTCSEEEECTT-CEEECCCEEEEEEECHHHHHHTTC-EEECCBSC
T ss_pred             ---HHHHHHHHHHhCCCCEEEEECCChHHHHHHHHHhCCEEEECCC-CEeecceeEEecCchHHHHHhcCc-eeeeeecc
Confidence               2445667778899999999999999999999999999999988 88998874            5787 3321    


Q ss_pred             ---------h-H---------------HHHHHHhCCHHH-----HHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHH
Q 041046          149 ---------F-T---------------ALFRAKVGSATA-----RRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS  198 (243)
Q Consensus       149 ---------g-~---------------~~l~~~~g~~~~-----a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a  198 (243)
                               + +               .++.+.++ ..+     +.+++++|+.++|+||+++||||++++. +++.+++
T Consensus       434 ~~k~~~~~~~~t~~~~~~l~~~l~~~~~~f~~~V~-~~Rg~~~~a~~~l~~G~~~ta~eA~~~GLVD~v~~~-~~~~~~a  511 (593)
T 3bf0_A          434 PLADVSITRALPPEAQLMMQLSIENGYKRFITLVA-DARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDF-DDAVAKA  511 (593)
T ss_dssp             GGGCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCHHHHHTTCTTCEEEHHHHHHHTSCSEECCH-HHHHHHH
T ss_pred             cccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHhcCCCcCHHHHHHCCCCcCccCH-HHHHHHH
Confidence                     1 1               45677777 666     7899999999999999999999999976 7787777


Q ss_pred             HHHHH
Q 041046          199 MRLAK  203 (243)
Q Consensus       199 ~~~a~  203 (243)
                      .++++
T Consensus       512 ~~~a~  516 (593)
T 3bf0_A          512 AELAK  516 (593)
T ss_dssp             HHHSC
T ss_pred             HHHcC
Confidence            77554

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.85  E-value=1.9e-21  Score=161.85  Aligned_cols=168  Identities=14%  Similarity=0.203  Sum_probs=123.9

Q ss_pred             eCCEEEEEEcCCCCCCCCC-----CC--HHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchH
Q 041046            7 HGDVFVLTLTGSSDVDEHR-----FG--PSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~-----~~--~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      +++|++|.++.+=  ..+.     ++  .-.+++|.++|+++.+|++++ +||+++.    |.|.|+....         
T Consensus         2 ~~~iavi~i~G~I--~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~-~ivL~~~----s~Gg~~~~~~---------   65 (240)
T 3rst_A            2 SSKIAVLEVSGTI--QDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVK-GIVLKVN----SPGGGVYESA---------   65 (240)
T ss_dssp             CCEEEEEEEESCB--CCC---------CCCCHHHHHHHHHHHHHCTTEE-EEEEEEE----ECCBCHHHHH---------
T ss_pred             CCeEEEEEEEEEE--cCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcE-EEEEEec----CCCCCHHHHH---------
Confidence            4679999998762  1111     10  013689999999999999999 8999885    6788876532         


Q ss_pred             HHHHHHHHhHHHHHHHHhc-CCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeec---------------------
Q 041046           80 ERLLYMVESFRPVVAAMMD-LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMS---------------------  137 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~-~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~p---------------------  137 (243)
                              .+.+.+.++.. ++|||||+++|.|.|+|++++++||++|++++ +.|+.+                     
T Consensus        66 --------~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~-a~~g~~Gv~~~~~~~~~~l~k~Gi~~~  136 (240)
T 3rst_A           66 --------EIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAADKIFATPE-TLTGSLGVIMESVNYSKLADKLGISFE  136 (240)
T ss_dssp             --------HHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTSSEEEECTT-CEEECCCCEEEEEECHHHHHHHTCEEE
T ss_pred             --------HHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhCCeeEECCC-CeEeccceeeEecCHHHHHHHcCCeEE
Confidence                    23455666666 89999999999999999999999999999988 889998                     


Q ss_pred             ccccCCCCchhhH---------------------------HHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          138 EVDIGATLPDYFT---------------------------ALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       138 e~~~Gl~~p~~g~---------------------------~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +.+.|- ++..+.                           ..-.|.+. .....+ +++|+.+++++|+++||||++.+.
T Consensus       137 ~~~~G~-~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~R~l~-~~~~~~-~~~g~~~~a~~A~~~GLVD~i~~~  213 (240)
T 3rst_A          137 TIKSGA-HADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKGRGMP-KAEVKK-IADGRVYDGRQAKKLNLVDELGFY  213 (240)
T ss_dssp             EEESST-TTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-HHHHHH-HCSSCEEEHHHHHHTTSSSEECCH
T ss_pred             EEeccc-cccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-HHHHHH-HhcCCcccHHHHHHcCCCcccCCH
Confidence            555565 454431                           01223345 455444 778999999999999999999976


Q ss_pred             hHHHHHHHHHHHH
Q 041046          191 EEQVAEASMRLAK  203 (243)
Q Consensus       191 ~~~l~~~a~~~a~  203 (243)
                       +++.+.+.+++.
T Consensus       214 -~~~~~~~~~~~~  225 (240)
T 3rst_A          214 -DDTITAMKKDHK  225 (240)
T ss_dssp             -HHHHHHHHHHCG
T ss_pred             -HHHHHHHHHHhC
Confidence             776666665543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.85  E-value=9e-21  Score=156.08  Aligned_cols=156  Identities=19%  Similarity=0.244  Sum_probs=126.3

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMV   86 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~   86 (243)
                      .+.|++|+++++       ++..+.+.|.+.|+.++++ +++ +|+++..    |.|.++..                  
T Consensus         7 ~~~V~vI~i~g~-------I~~~~~~~l~~~l~~a~~~-~~~-~Ivl~in----spGG~v~~------------------   55 (230)
T 3viv_A            7 KNIVYVAQIKGQ-------ITSYTYDQFDRYITIAEQD-NAE-AIIIELD----TPGGRADA------------------   55 (230)
T ss_dssp             CCEEEEEEEESC-------BCHHHHHHHHHHHHHHHHT-TCS-EEEEEEE----BSCEEHHH------------------
T ss_pred             CCeEEEEEEeCE-------ECHHHHHHHHHHHHHHhcC-CCC-EEEEEEe----CCCcCHHH------------------
Confidence            467999999966       9999999999999999864 688 8888764    66766543                  


Q ss_pred             HhHHHHHHHHhcCCCcEEEEE---CcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhH-------------
Q 041046           87 ESFRPVVAAMMDLPMPTVAAV---NGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFT-------------  150 (243)
Q Consensus        87 ~~~~~~~~~l~~~~kp~Ia~v---~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-------------  150 (243)
                        ...++..|..++||||+.|   +|.|.|+|+.++++||++++.++ +.|+.+++..+.  |..|.             
T Consensus        56 --~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia~a~d~~~a~p~-a~ig~~~p~~~~--~~~G~~~~~~~k~~~~~~  130 (230)
T 3viv_A           56 --MMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPG-TSIGACRPILGY--SQNGSIIEAPPAITNYFI  130 (230)
T ss_dssp             --HHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHHHTSSEEEECTT-CEEECCCEEEEE--CTTSCEEECCHHHHHHHH
T ss_pred             --HHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHHHhcCceeECCC-CEEEeccceecC--CCCCCchHHHHHHHHHHH
Confidence              2456667788999999999   99999999999999999999988 889988876432  22221             


Q ss_pred             ---HHHHHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHH
Q 041046          151 ---ALFRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEAS  198 (243)
Q Consensus       151 ---~~l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a  198 (243)
                         ..+.++.|+ ...+.+++..+..++|+||+++||||+|+++.+++.+++
T Consensus       131 ~~~~~la~~~Gr~~~~a~~~~~~~~~ltA~EAle~GliD~V~~~~~~ll~~~  182 (230)
T 3viv_A          131 AYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYGVIEVVARDINELLKKS  182 (230)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHTCCEECHHHHHHTTSCSEECSSHHHHHHHH
T ss_pred             HHHHHHHHHhCcCHHHHHHHHhcCCeecHHHHHHcCCceEecCCHHHHHHHh
Confidence               246777773 478999999999999999999999999998856555443

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.68  E-value=2.1e-16  Score=135.25  Aligned_cols=158  Identities=11%  Similarity=0.106  Sum_probs=124.5

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |+.+..+..-  ..|+++..+.+.+.++++.+.++ .+. +|++++.|     |+++.+...        .     ...+
T Consensus       120 V~v~a~d~~~--~ggslg~~~~~Ki~r~~e~A~~~-~~P-vI~l~~sG-----Garlqeg~~--------~-----l~~~  177 (304)
T 2f9y_B          120 VVAAAFEFAF--MGGSMGSVVGARFVRAVEQALED-NCP-LICFSASG-----GARMQEALM--------S-----LMQM  177 (304)
T ss_dssp             CBEEEECTTS--TTTCBCTHHHHHHHHHHHHHHHH-TCC-EEEEEEES-----SBCGGGTHH--------H-----HHHH
T ss_pred             EEEEEEcCcc--ccCCCCHHHHHHHHHHHHHHHhC-CCC-EEEEECCC-----CcCHHHHHH--------H-----HHHH
Confidence            3444444433  57999999999999999999998 788 89998866     888855321        0     1234


Q ss_pred             HHHHHHHh---cCCCcEEEEECcccchhH-HHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHH
Q 041046           90 RPVVAAMM---DLPMPTVAAVNGHAAAAG-FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRD  165 (243)
Q Consensus        90 ~~~~~~l~---~~~kp~Ia~v~G~a~G~G-~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~  165 (243)
                      .+++.++.   ..++|+|++|+|+|.||| +.++++||++||.++ +.|++.           |...+.+.+| ..    
T Consensus       178 ~~i~~al~~~~~~~vP~IavV~G~~~GGg~a~~a~~~D~via~~~-A~i~v~-----------Gp~~i~~~ig-~~----  240 (304)
T 2f9y_B          178 AKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPK-ALIGFA-----------GPRVIEQTVR-EK----  240 (304)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEESS-----------CHHHHHHHHT-SC----
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCCccHHHHHHHhcCCEEEEeCC-cEEEee-----------cHHHHHHHhC-cc----
Confidence            55555554   459999999999999999 678999999999987 777643           4566677777 32    


Q ss_pred             HHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          166 VLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       166 l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                        ++++..+|+++.++|+||.|+++ +++.+.+.+++..++..|
T Consensus       241 --l~~~~~~Ae~~~~~Glvd~Vv~~-~el~~~l~~ll~~l~~~~  281 (304)
T 2f9y_B          241 --LPPGFQRSEFLIEKGAIDMIVRR-PEMRLKLASILAKLMNLP  281 (304)
T ss_dssp             --CCTTTTBHHHHGGGTCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred             --CCcccCCHHHHHhcCCccEEeCc-HHHHHHHHHHHHHhhcCC
Confidence              46888999999999999999988 789999999999998754

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.66  E-value=7.8e-16  Score=125.99  Aligned_cols=137  Identities=14%  Similarity=0.114  Sum_probs=105.9

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA  105 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  105 (243)
                      ++..+.+++.+.|..++.++.++ .|++.    ..|.|.++..                    ...++..+..+++||++
T Consensus        54 I~~~~a~~i~~~L~~l~~~~~~k-~I~l~----InSPGG~v~a--------------------g~~I~~~i~~~~~pV~t  108 (218)
T 1y7o_A           54 VEDNMANSVIAQLLFLDAQDSTK-DIYLY----VNTPGGSVSA--------------------GLAIVDTMNFIKADVQT  108 (218)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTS-CEEEE----EEECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCC-CEEEE----EECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence            88999999999999999887777 55553    2455554432                    23355566778999999


Q ss_pred             EECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchhh-------------------HHHHHHHhCC-HHHH
Q 041046          106 AVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDYF-------------------TALFRAKVGS-ATAR  163 (243)
Q Consensus       106 ~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~g-------------------~~~l~~~~g~-~~~a  163 (243)
                      .++|.|.++|+.++++||.  |++.++ +.|++++..-|.  |..|                   ...+.+..|. ...+
T Consensus       109 ~v~G~AaS~G~~Ia~a~d~g~r~a~p~-a~igih~p~~g~--~~~G~~~di~~~~~~i~~~~~~~~~~~a~~~G~~~~~i  185 (218)
T 1y7o_A          109 IVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGT--GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKV  185 (218)
T ss_dssp             EEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC----------------CHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             EEccEeHHHHHHHHHcCCcCcEEEcCC-cEEEEecccccc--cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            9999999999999999999  999988 889988876333  3223                   2456677772 2577


Q ss_pred             HHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          164 RDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      .+++..++.++|+||+++||||+|+++
T Consensus       186 ~~~~~~~~~~ta~EA~e~GLVD~v~~~  212 (218)
T 1y7o_A          186 HADAERDNWMSAQETLEYGFIDEIMAN  212 (218)
T ss_dssp             HHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHHHhCCCEEcHHHHHHCCCCcEEcCc
Confidence            888889999999999999999999987

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=99.62  E-value=5.2e-15  Score=127.72  Aligned_cols=156  Identities=15%  Similarity=0.163  Sum_probs=113.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      ++++++..+...+.++.+++..-+  +|.+...+ ...+.|.  +.              .-....+.+.+.++..+++|
T Consensus       139 G~~~~~~~~Ka~r~~~~A~~~~~P--lI~lvdt~Ga~~g~~a--e~--------------~g~~~~~a~~l~al~~~~vP  200 (327)
T 2f9i_A          139 GMAHPEGYRKALRLMKQAEKFNRP--IFTFIDTKGAYPGKAA--EE--------------RGQSESIATNLIEMASLKVP  200 (327)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEESCSCCCHHH--HH--------------TTHHHHHHHHHHHHHTCSSC
T ss_pred             CCCCHHHHHHHHHHHHHHhhcCCC--EEEEEeCCCCCcchhh--hh--------------hhhHHHHHHHHHHHHhCCCC
Confidence            589999999999999999987654  44444333 3222211  11              01123456677888999999


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcC
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG  182 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~G  182 (243)
                      +|++|+|.|.|||+.++++||++||.++ +.|++      + .|.+++..+.+..+....+.++    ..++|++|+++|
T Consensus       201 vIavV~G~a~GGGa~~~~~~D~via~~~-A~~~v------~-~peg~a~il~~~~~~a~~A~e~----~~itA~~a~~~G  268 (327)
T 2f9i_A          201 VIAIVIGEGGSGGALGIGIANKVLMLEN-STYSV------I-SPEGAAALLWKDSNLAKIAAET----MKITAHDIKQLG  268 (327)
T ss_dssp             EEEEEEEEEBHHHHHTTCCCSEEEEETT-CBCBS------S-CHHHHHHHHSSCGGGHHHHHHH----HTCBHHHHHHTT
T ss_pred             EEEEEECCcChHHHHHHHCCCEEEEcCC-ceEee------c-CchHHHHHHHHHhcchHHHHHH----cCCCHHHHHHcC
Confidence            9999999999999999999999999988 77763      2 5666676666665534666665    789999999999


Q ss_pred             chhhhcCCh--------H----HHHHHHHHHHHHHhcCC
Q 041046          183 LVQAAYDSE--------E----QVAEASMRLAKQMAGRK  209 (243)
Q Consensus       183 lv~~v~~~~--------~----~l~~~a~~~a~~la~~~  209 (243)
                      +||+|++.+        +    ++.+...+..+.+...+
T Consensus       269 lVd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~  307 (327)
T 2f9i_A          269 IIDDVISEPLGGAHKDIEQQALAIKSAFVAQLDSLESLS  307 (327)
T ss_dssp             SSSEEECCCTTCGGGCHHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CceEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999842        2    45555555556665554

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=99.58  E-value=2.3e-14  Score=124.04  Aligned_cols=157  Identities=13%  Similarity=0.099  Sum_probs=111.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      ++++++..+...+.++.+++..-+  +|.+...++++. |...+.              .-....+.+.+.++..+++|+
T Consensus       153 G~~~~~~~~Ka~r~~~~A~~~~lP--lI~lvDt~Ga~~-g~~aE~--------------~g~~~~~a~~l~al~~~~vPv  215 (339)
T 2f9y_A          153 GMPAPEGYRKALRLMQMAERFKMP--IITFIDTPGAYP-GVGAEE--------------RGQSEAIARNLREMSRLGVPV  215 (339)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEESCSCC-SHHHHH--------------TTHHHHHHHHHHHHHTCSSCE
T ss_pred             CCCCHHHHHHHHHHHHHHhhcCCC--EEEEEeCCCCcc-chHHHH--------------HHHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999887654  455544332222 111111              112334567778899999999


Q ss_pred             EEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCc
Q 041046          104 VAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGL  183 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Gl  183 (243)
                      |++|+|.|.|||+.++++||++||.++ +.|++      + .|.+++..+.+.......+.++    ..++|++|+++|+
T Consensus       216 IavV~G~a~GGGa~~~~~~D~via~p~-A~~~v------~-~Peg~asil~~~~~~~~~Aae~----~~itA~~a~~~Gl  283 (339)
T 2f9y_A          216 VCTVIGEGGSGGALAIGVGDKVNMLQY-STYSV------I-SPEGCASILWKSADKAPLAAEA----MGIIRPRLKELKL  283 (339)
T ss_dssp             EEEEEEEEEHHHHHTTCCCSEEEECTT-CEEES------S-CHHHHHHHHSSCSTTHHHHHHH----HTCSHHHHHTTTS
T ss_pred             EEEEeCCcCcHHHHHHhccCeeeecCC-CEEEe------e-ccchHHHHHHHhhccHHHHHHH----cCCCHHHHHHcCC
Confidence            999999999999999999999999988 77774      3 5777666555544326777666    6799999999999


Q ss_pred             hhhhcCCh--------H----HHHHHHHHHHHHHhcCC
Q 041046          184 VQAAYDSE--------E----QVAEASMRLAKQMAGRK  209 (243)
Q Consensus       184 v~~v~~~~--------~----~l~~~a~~~a~~la~~~  209 (243)
                      ||+|++.+        +    ++.++..+..+.+...+
T Consensus       284 Vd~VV~ep~gga~~~~~~~~~~lr~~l~~~L~~l~~~~  321 (339)
T 2f9y_A          284 IDSIIPEPLGGAHRNPEAMAASLKAQLLADLADLDVLS  321 (339)
T ss_dssp             CSCCCCCSTTCGGGCHHHHHHHHHHHHHHHTTTTTTSC
T ss_pred             eeEEecCCCCCCccCHHHHHHHHHHHHHHHHHHHHCCC
Confidence            99999842        2    44444444555554444

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.34  E-value=5.7e-12  Score=102.31  Aligned_cols=155  Identities=17%  Similarity=0.089  Sum_probs=101.0

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRP   91 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~   91 (243)
                      .|.++.+       ++..+.+.+.+.|..++.++.++ .|++.    .-|.|.++..                    ...
T Consensus        29 ii~l~G~-------I~~~~a~~i~~~L~~~~~~~~~k-~I~l~----InSPGG~v~a--------------------~~~   76 (208)
T 2cby_A           29 IIFLGSE-------VNDEIANRLCAQILLLAAEDASK-DISLY----INSPGGSISA--------------------GMA   76 (208)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCSSS-CEEEE----EEECCBCHHH--------------------HHH
T ss_pred             EEEEcCE-------ECHHHHHHHHHHHHHHHhCCCCC-CEEEE----EECCCCCHHH--------------------HHH
Confidence            3566655       88899999999999999776666 33332    1233333321                    244


Q ss_pred             HHHHHhcCCCcEEEEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCc--hhh-------------HHHHH
Q 041046           92 VVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLP--DYF-------------TALFR  154 (243)
Q Consensus        92 ~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p--~~g-------------~~~l~  154 (243)
                      ++..|..+++||++.+.|.|.++|..++++||.  |++.++ +.++.....-|..-+  +..             ...+.
T Consensus        77 I~~~i~~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~-a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a  155 (208)
T 2cby_A           77 IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNA  155 (208)
T ss_dssp             HHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCC-cEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677789999999999999999999999998  999888 777766544222000  000             01233


Q ss_pred             HHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHH
Q 041046          155 AKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASM  199 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~  199 (243)
                      +..|. .....+++..+..++|+||+++||||++..+.+++.+..+
T Consensus       156 ~~~g~~~~~i~~~~~~~~~~ta~eA~e~GLvD~i~~~~~~ll~~~~  201 (208)
T 2cby_A          156 EFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITRAHVNGEAQL  201 (208)
T ss_dssp             HHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSCC--------
T ss_pred             HHhCcCHHHHHHHHhCCcEEcHHHHHHcCCCcEecCchHHHHHHHH
Confidence            33441 3345567788999999999999999999987666665544

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=98.91  E-value=8.2e-09  Score=82.63  Aligned_cols=139  Identities=15%  Similarity=0.072  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA  105 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  105 (243)
                      ++..+.+.+.+.|..++.++..+ .|++.=    =|.|.++..                    ...++..|...++|+++
T Consensus        35 I~~~~a~~i~~~L~~l~~~~~~~-~I~l~I----nSPGG~v~a--------------------~~~I~~~i~~~~~pV~~   89 (193)
T 1yg6_A           35 VEDHMANLIVAQMLFLEAENPEK-DIYLYI----NSPGGVITA--------------------GMSIYDTMQFIKPDVST   89 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSS-CEEEEE----EECCBCHHH--------------------HHHHHHHHHHSSSCEEE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCC-CEEEEE----ECcCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence            88899999999999998766666 344421    233333322                    24455567778899999


Q ss_pred             EECcccchhHHHHHHhccE--EEEecCCcceeecccccCCC--Cchhh-------------HHHHHHHhCC-HHHHHHHH
Q 041046          106 AVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGAT--LPDYF-------------TALFRAKVGS-ATARRDVL  167 (243)
Q Consensus       106 ~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g-------------~~~l~~~~g~-~~~a~~l~  167 (243)
                      .+.|.|..+|..++++||.  |++.++ +.++......|..  ..+..             ...+.+..|. .....+++
T Consensus        90 ~v~g~AaS~g~~Ia~ag~~~~r~a~p~-s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~~~i~~~~  168 (193)
T 1yg6_A           90 ICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDT  168 (193)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             EEeeeHHHHHHHHHHCCCcCcEEEecC-cEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            9999999999999999999  999988 7776554432220  00110             0012222331 33444444


Q ss_pred             hccCCCCHHHHHHcCchhhhcCC
Q 041046          168 LRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       168 l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      -.+..++|+||+++||||++..+
T Consensus       169 ~~~~~~ta~eA~~~GliD~i~~~  191 (193)
T 1yg6_A          169 ERDRFLSAPEAVEYGLVDSILTH  191 (193)
T ss_dssp             SSCEEEEHHHHHHHTSSSEECCC
T ss_pred             cCCeEEcHHHHHHcCCCCEecCC
Confidence            34556799999999999999875

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=98.91  E-value=1.5e-08  Score=82.43  Aligned_cols=144  Identities=11%  Similarity=0.038  Sum_probs=94.4

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      +|.+..+       ++..+.+.+...|..++.++. +. ++.+.+.      |.++..                    ..
T Consensus        41 iI~l~G~-------I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSP------GGsv~a--------------------~~   86 (215)
T 2f6i_A           41 IIYLTDE-------INKKTADELISQLLYLDNINH-NDIKIYINSP------GGSINE--------------------GL   86 (215)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCC-SCEEEEEEEC------CBCHHH--------------------HH
T ss_pred             EEEEccE-------ECHHHHHHHHHHHHHHHhCCC-CcEEEEEECC------CCCHHH--------------------HH
Confidence            3555555       888899999999999876555 52 3333333      333321                    24


Q ss_pred             HHHHHHhcCCCcEEEEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCC--Cchhh--HH-----------HH
Q 041046           91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGAT--LPDYF--TA-----------LF  153 (243)
Q Consensus        91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~~-----------~l  153 (243)
                      .++..|...++|+++.+.|.|..+|..++++||.  |++.++ +.+.+.....|..  ..+..  ..           .+
T Consensus        87 ~I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~-s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~y  165 (215)
T 2f6i_A           87 AILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYL  165 (215)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSCC--------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCC-CEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            4556677788999999999999999999999999  999988 7776554433320  00110  00           11


Q ss_pred             HHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          154 RAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       154 ~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      .+..|. .....+++-.+..++|+||+++||||+|..+
T Consensus       166 a~~~g~~~e~i~~~~~~~~~lta~eA~e~GLiD~I~~~  203 (215)
T 2f6i_A          166 SSFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  203 (215)
T ss_dssp             HHHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHHhCcCHHHHHHHHhCCeecCHHHHHHCCCCCEecCC
Confidence            222221 3344444443455799999999999999976

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=98.90  E-value=3e-08  Score=79.87  Aligned_cols=139  Identities=17%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+.+.+...|..++.++..+. ++.+.+.      |.++..                    ...++..+...++|++
T Consensus        36 I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSP------GG~v~~--------------------~~~I~~~i~~~~~~V~   89 (203)
T 3qwd_A           36 IDDNVANSIVSQLLFLQAQDSEKDIYLYINSP------GGSVTA--------------------GFAIYDTIQHIKPDVQ   89 (203)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHH--------------------HHHHHHHHHHSSSCEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCC------CCCHHH--------------------HHHHHHHHHHhcCCcE
Confidence            899999999999999997665552 3334333      333321                    2445556677899999


Q ss_pred             EEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCC--CchhhH-------------HHHHHHhC-CHHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGAT--LPDYFT-------------ALFRAKVG-SATARRDV  166 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~--~p~~g~-------------~~l~~~~g-~~~~a~~l  166 (243)
                      +.+.|.|.++|..++++||  .|++.++ +.+.+....-|..  ..+.-.             ..+.+.-| ......++
T Consensus        90 t~~~G~AaSag~~i~~ag~~g~r~~~p~-a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tG~~~e~i~~~  168 (203)
T 3qwd_A           90 TICIGMAASMGSFLLAAGAKGKRFALPN-AEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKD  168 (203)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEeeeehhHHHHHHHcCCcCeEEEcCC-ceEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999999  6999988 6776544332220  111110             01222222 13344555


Q ss_pred             HhccCCCCHHHHHHcCchhhhcCCh
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYDSE  191 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~~~  191 (243)
                      +-...-++|+||+++||+|+|..+.
T Consensus       169 ~~~d~~lta~EA~e~GliD~I~~~~  193 (203)
T 3qwd_A          169 TDRDNFLTAEEAKEYGLIDEVMVPE  193 (203)
T ss_dssp             HTSCCCEEHHHHHHHTSCSEECCCC
T ss_pred             hhcCceecHHHHHHcCCcCEecCCc
Confidence            5555678999999999999999873

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=98.87  E-value=1e-08  Score=82.44  Aligned_cols=142  Identities=14%  Similarity=0.069  Sum_probs=93.0

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCe-EEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGS-ALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~-vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++..+.+.+...|..++.++..+. ++.+.+      .|.++..                    ...++..+...++|++
T Consensus        39 I~~~~a~~i~~~L~~l~~~~~~~~I~l~INS------pGG~v~~--------------------~~~I~~~i~~~~~~v~   92 (201)
T 3p2l_A           39 VNDHSANLVIAQLLFLESEDPDKDIYFYINS------PGGMVTA--------------------GMGVYDTMQFIKPDVS   92 (201)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE------CCBCHHH--------------------HHHHHHHHHHSSSCEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCCCEEEEEEC------CCCCHHH--------------------HHHHHHHHHHhCCCeE
Confidence            899999999999999987665552 333333      3333322                    2445566777889999


Q ss_pred             EEECcccchhHHHHHHhccE--EEEecCCcceeecccccCCC--Cchhh--H-----------HHHHHHhCC-HHHHHHH
Q 041046          105 AAVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGAT--LPDYF--T-----------ALFRAKVGS-ATARRDV  166 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~--~p~~g--~-----------~~l~~~~g~-~~~a~~l  166 (243)
                      +.+.|.|.++|..+++++|.  |++.++ +.+.+....-|..  ..+..  .           ..+.+.-|. .....++
T Consensus        93 t~~~G~AaS~g~~i~~ag~~g~r~~~p~-a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~e~i~~~  171 (201)
T 3p2l_A           93 TICIGLAASMGSLLLAGGAKGKRYSLPS-SQIMIHQPLGGFRGQASDIEIHAKNILRIKDRLNKVLAHHTGQDLETIVKD  171 (201)
T ss_dssp             EEEEEEEETHHHHHHHTSSTTCEEECTT-CEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEEcCEehhHHHHHHHcCccCCEEEcCC-CeEEEeccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            99999999999999999998  999988 6776554432220  00000  0           011122231 2333444


Q ss_pred             HhccCCCCHHHHHHcCchhhhcCChHHH
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYDSEEQV  194 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~~~~~l  194 (243)
                      +-....++|+||+++||||+|+++.+++
T Consensus       172 ~~~~~~lta~EA~e~GliD~I~~~~~~l  199 (201)
T 3p2l_A          172 TDRDNFMMADEAKAYGLIDHVIESREAI  199 (201)
T ss_dssp             TSSCEEEEHHHHHHHTSCSEECCCSCC-
T ss_pred             hhcCeeecHHHHHHcCCccEecCCHHHh
Confidence            4333447999999999999999875544

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=98.87  E-value=2.7e-08  Score=83.47  Aligned_cols=144  Identities=14%  Similarity=0.078  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVA  105 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia  105 (243)
                      ++..+.+.+...|..++.++..+ .|++.=    -|.|.++..                    ...++..|...++||++
T Consensus        91 I~d~~a~~iiaqL~~l~~ed~~k-~I~L~I----NSPGGsV~a--------------------g~aIyd~I~~~k~pV~t  145 (277)
T 1tg6_A           91 IDDSVASLVIAQLLFLQSESNKK-PIHMYI----NSPGGVVTA--------------------GLAIYDTMQYILNPICT  145 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSS-CEEEEE----EECCBCHHH--------------------HHHHHHHHHHSCSCEEE
T ss_pred             ECHHHHHHHHHHHHHHHhcCCCC-CEEEEE----ECCCCCHHH--------------------HHHHHHHHHhcCCCEEE
Confidence            88889999999999987655455 343321    233333321                    24455566778899999


Q ss_pred             EECcccchhHHHHHHhccE--EEEecCCcceeecccccCCCCchh-hHH---------------HHHHHhCC-HHHHHHH
Q 041046          106 AVNGHAAAAGFTLALSHDY--VIMRRDKGVLYMSEVDIGATLPDY-FTA---------------LFRAKVGS-ATARRDV  166 (243)
Q Consensus       106 ~v~G~a~G~G~~la~~~D~--~ia~~~~~~f~~pe~~~Gl~~p~~-g~~---------------~l~~~~g~-~~~a~~l  166 (243)
                      .+.|.|..+|..++++||.  |++.++ +.++.-....|. .... -..               .+.+..|. .....++
T Consensus       146 ~v~G~AASaG~~Ia~Agd~gkr~a~P~-S~ImihqP~~g~-~G~a~Di~~~a~ei~~~~~~~~~i~a~~tG~~~e~i~~~  223 (277)
T 1tg6_A          146 WCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGA-RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVIESA  223 (277)
T ss_dssp             EEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             EEccEeHHHHHHHHHCCCcCCEEEecC-CEEEEecccccc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999998  999988 777655443332 1110 000               11122221 3344455


Q ss_pred             HhccCCCCHHHHHHcCchhhhcCChHHHHH
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAE  196 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~  196 (243)
                      +-.+..++|+||+++||||+|..+.+++.+
T Consensus       224 ~drd~~lta~EAle~GLID~I~~~~~~~~~  253 (277)
T 1tg6_A          224 MERDRYMSPMEAQEFGILDKVLVHPPQDGE  253 (277)
T ss_dssp             HSSCEEECHHHHHHHTSCSEECSSCC----
T ss_pred             HhcCcccCHHHHHHCCCCCEecCcchhhcc
Confidence            544566799999999999999987555443

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=98.87  E-value=4.6e-08  Score=88.73  Aligned_cols=215  Identities=17%  Similarity=0.125  Sum_probs=157.5

Q ss_pred             eEeCCEEEEEEcCCCCCCC-----------CCCCHHHHHHHHHHHHHHH-hCCCCCeEEEEecCCCccccCCChhhHH--
Q 041046            5 EKHGDVFVLTLTGSSDVDE-----------HRFGPSAIDSILSAIAKAK-AEATPGSALITTSHGKFFSNGLDLAWAQ--   70 (243)
Q Consensus         5 ~~~~~v~~i~ln~p~~~~~-----------N~~~~~~~~~l~~~l~~~~-~d~~i~~vvvl~g~g~~F~~G~dl~~~~--   70 (243)
                      ++..+++.++...|...+.           +.....+..||.+++..+. ++.++. .+++...|+.       ..+.  
T Consensus       273 ~ra~r~a~~~~~g~~~a~~~~ld~i~aa~~~~~~l~~~~el~~All~l~~ne~~~~-~~~~~t~g~~-------~~~~~~  344 (556)
T 2w3p_A          273 DRAKRIATFTAKAPQTEPPASIDAIVAAGANWWPLKFAREFDDAILSMRTNELAVG-TWVFRTEGDA-------RHLLAA  344 (556)
T ss_dssp             ETTTTEEEEEEECCSSCCCCSHHHHHHHGGGSHHHHHHHHHHHHHHHHHHHCSSCC-EEEEEEESCH-------HHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCchhhHHHHHHhhhcchhhhhhhHHHHHHHhhhhccHHHh-HhhhhccCCH-------HHHhhh
Confidence            4455788888887741111           2233457788977777776 678887 7887766643       2221  


Q ss_pred             -hcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC-cccchhH-HHHHHhccEEEEec---C---Ccceeeccccc
Q 041046           71 -AAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN-GHAAAAG-FTLALSHDYVIMRR---D---KGVLYMSEVDI  141 (243)
Q Consensus        71 -~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~-G~a~G~G-~~la~~~D~~ia~~---~---~~~f~~pe~~~  141 (243)
                       .......+.+..++....+.+.++++.-...-+++.|. |.|+.|- +|++++||..|+-+   +   ...+.+.+.++
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~r~d~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (556)
T 2w3p_A          345 DASLMQHKDHWFVRETIGLLRRTLARIDVSSRSLFALIEPGSCFAGTFAELAFAADRTYMAALPANEDEEPAITLSEVNF  424 (556)
T ss_dssp             HHHHHHTTTSHHHHHHHHHHHHHHHHHHTCSSEEEEEECTTCCEEGGGHHHHHTSSEEEECCCTTCTTTSCCEECCGGGG
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHHhcccchhheeeecCCcchHHHHHHHHHHhhhhhhhcCCCCCCCCceeEeecccc
Confidence             10010223556778888899999999999999999996 9999875 69999999999853   1   46789999999


Q ss_pred             CCCCchhh-HHHHHHHhCCHHHHHHH--HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 041046          142 GATLPDYF-TALFRAKVGSATARRDV--LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEI  218 (243)
Q Consensus       142 Gl~~p~~g-~~~l~~~~g~~~~a~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~  218 (243)
                      |. +|..- ..+|.+++-.......-  ...|+++++++|.++|||....++ -++++++.-...+-++.|  |.++..+
T Consensus       425 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~  500 (556)
T 2w3p_A          425 GL-YPMVTHQSRLARRFYEETEPLDAVRSRIGQAIKPVEAERLGLVTASPDD-IDWADEIRIALEERAAMS--PDALTGL  500 (556)
T ss_dssp             TT-SCCTTSSCHHHHHTTTCHHHHHHHHTTTTSCBCHHHHHHTTSSSBCCCT-TTHHHHHHHHHHHHHHSC--HHHHHHH
T ss_pred             Cc-ccCCCchhHHHHHhcCCcchHHHHHHHhCCCCCHHHHHhcCCeecCccc-CChHHHHHHHHHHHhccC--cchhccc
Confidence            99 88774 56777775213322221  345999999999999999998887 679999999999999999  9999999


Q ss_pred             HHHhhhHHHHHhc
Q 041046          219 RKSLYPDLCGVLG  231 (243)
Q Consensus       219 K~~l~~~~~~~~~  231 (243)
                      ...++..-.+.++
T Consensus       501 ~~~~~~~~~~~~~  513 (556)
T 2w3p_A          501 EANLRFNGPETME  513 (556)
T ss_dssp             HHHHSSCSCCCHH
T ss_pred             hhhcccCCchhhh
Confidence            8888766555544

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.44  E-value=2.5e-06  Score=79.30  Aligned_cols=86  Identities=15%  Similarity=0.154  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCeEEEEecCCCccccC-CChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEEC
Q 041046           30 AIDSILSAIAKAKAEATPGSALITTSHGKFFSNG-LDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN  108 (243)
Q Consensus        30 ~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G-~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~  108 (243)
                      ...++.+.|+.+.+|+.++ .|++.-.    |.| .++....                 .+.+.++.+....|||||.++
T Consensus        71 ~~~~i~~~L~~a~~d~~ik-~I~L~in----spGgG~v~~~~-----------------~I~~~i~~~k~~gkpvva~~~  128 (593)
T 3bf0_A           71 SLFDIVNTIRQAKDDRNIT-GIVMDLK----NFAGGDQPSMQ-----------------YIGKALKEFRDSGKPVYAVGE  128 (593)
T ss_dssp             EHHHHHHHHHHHHHCTTCC-CEEEECT----EEEECCHHHHH-----------------HHHHHHHHHHHTTCCEEEEES
T ss_pred             CHHHHHHHHHHHHhCCCce-EEEEEeC----CCCCCcHHHHH-----------------HHHHHHHHHHhcCCeEEEEEc
Confidence            4678899999999999999 7777542    333 4444322                 244455555556899999987


Q ss_pred             cccchhHHHHHHhccEEEEecCCcceeeccc
Q 041046          109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEV  139 (243)
Q Consensus       109 G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~  139 (243)
                      + +..+|+.|+++||.+++.+. +.++...+
T Consensus       129 ~-aas~~y~lAsaad~i~~~P~-~~vg~~g~  157 (593)
T 3bf0_A          129 N-YSQGQYYLASFANKIWLSPQ-GVVDLHGF  157 (593)
T ss_dssp             C-EEHHHHHHHTTSSEEEECTT-CCEECCCC
T ss_pred             c-chhHHHHHHHhCCEEEECCC-ceEEEecc
Confidence            6 67788999999999999988 66664443

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=98.42  E-value=2.1e-07  Score=85.77  Aligned_cols=160  Identities=17%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.+...+.+.++++.+.+..-+  +|.+..     |.|+.+.+-.....  + .....    .+..-+..+.....|
T Consensus       118 gGs~g~~~~~Ki~r~~e~A~~~~lP--vI~l~d-----SgGArlqe~~~~l~--~-~~~~g----~i~~~~~~ls~~giP  183 (587)
T 1pix_A          118 AGAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP--N-RRGGG----TPFFRNAELNQLGIP  183 (587)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS--S-TTSTT----HHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEe-----CCCCCccccchhcc--c-cccHH----HHHHHHHHHhCCCCC
Confidence            4588899999999999999987554  555554     45566654222100  0 00001    122234456678899


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHH-HHHHHhCCHHHHHHHH-hccCCCCHHH---
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTA-LFRAKVGSATARRDVL-LRAKKIKGEE---  177 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~-~l~~~~g~~~~a~~l~-l~g~~~~a~e---  177 (243)
                      +|++|.|+|.|||... ..||++|++++.+.+++..       |..--. .-.-.++ .++|.+++ .+|+.+++++   
T Consensus       184 ~Isvv~G~~~GGga~~-a~~d~vim~e~~a~i~~~G-------P~vi~~~~~~~~~d-~~~A~el~~~tge~v~~e~lgg  254 (587)
T 1pix_A          184 VIVGIYGTNPAGGGYH-SISPTVIIAHEKANMAVGG-------AGIMGGMNPKGHVD-LEYANEIADMVDRTGKTEPPGA  254 (587)
T ss_dssp             EEEEECSEEETHHHHH-HHSSSEEEEETTCEEESCC-------CTTCCSCCSSSSCC-HHHHHHHHHHHHTTCCCCCSSB
T ss_pred             EEEEEecCCcHHHHHH-HhcCceEEecCCcEEEecC-------HHHHhhhccccccc-hhHHHHHHHHhCCccChhhccc
Confidence            9999999999999999 9999999988656665422       211000 0011266 88889999 8899887665   


Q ss_pred             --H--HHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          178 --A--LRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       178 --A--~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                        .  .+.|++|.++++.++..+.+.++...+
T Consensus       255 a~~h~~~~GvvD~vv~~e~~a~~~~r~~ls~l  286 (587)
T 1pix_A          255 VDIHYTETGFMREVYASEEGVLEGIKKYVGML  286 (587)
T ss_dssp             HHHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             HHHHHhhcCceeEecCCHHHHHHHHHHHHHhC
Confidence              2  369999999999555666666655444

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=98.37  E-value=2.2e-05  Score=71.51  Aligned_cols=144  Identities=16%  Similarity=0.187  Sum_probs=98.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.+..-+  +|.+..+     .|+.+.+-.         .....+..-+.... ++.. ..|
T Consensus       110 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~dS-----gGaRmqEg~---------~~l~~~~~i~~~~~-~~s~-~iP  171 (530)
T 3iav_A          110 GGALGEVYGQKIVKVMDFALKTGCP--VVGINDS-----GGARIQEGV---------ASLGAYGEIFRRNT-HASG-VIP  171 (530)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECC-----CSBCGGGTH---------HHHHHHHHHHHHHH-HTTT-TSC
T ss_pred             eEeccHHHHHHHHHHHHHHHHcCCC--EEEEEcC-----CCcchhhhh---------hhHHHHHHHHHHHH-HHcC-CCC
Confidence            4589999999999999999987544  5666553     344443311         11112222222222 2222 499


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH----
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|++++.+.++       +.             | +...+.  .+|+.+++++.    
T Consensus       172 ~Isvv~G~~~GG~a~~~al~D~~im~~~~a~i~-------~a-------------G-P~vi~~--~~ge~v~~e~LGGa~  228 (530)
T 3iav_A          172 QISLVVGPCAGGAVYSPAITDFTVMVDQTSHMF-------IT-------------G-PDVIKT--VTGEDVGFEELGGAR  228 (530)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEETTTCEEE-------SS-------------C-HHHHHH--HHCCCCCHHHHHBHH
T ss_pred             EEEEEecCcchHHHHHHHhCCEEEEecCCcEEE-------ec-------------C-HHHHHH--HhCCcCChhhcchHH
Confidence            999999999999998888999999998755554       21             2 332221  35788888775    


Q ss_pred             ---HHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          179 ---LRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                         ...|++|.++++.++..+.+.++...+-.
T Consensus       229 ~h~~~sGv~d~va~de~~a~~~~r~~ls~lp~  260 (530)
T 3iav_A          229 THNSTSGVAHHMAGDEKDAVEYVKQLLSYLPS  260 (530)
T ss_dssp             HHHHTSCCCSEEESSHHHHHHHHHHHHHHSCS
T ss_pred             HHHhccCceeEEecChHHHHHHHHHHHHhccc
Confidence               68999999999966788888888877743

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=98.33  E-value=6.9e-06  Score=65.87  Aligned_cols=147  Identities=16%  Similarity=0.156  Sum_probs=91.4

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCcccc-CCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSN-GLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~-G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      ++.++.+.+...|..++.++..+ ..+.+.+.|..--. |..+..                 ......++..|...+.||
T Consensus        37 I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~-----------------v~aglaIyd~m~~~~~~V   99 (205)
T 4gm2_A           37 IYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNG-----------------ITDVISIVDVINYISSDV   99 (205)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTH-----------------HHHHHHHHHHHHHSSSCE
T ss_pred             EcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCC-----------------HHHHHHHHHHHHhcCCCE
Confidence            99999999999999998543222 24555554411000 000111                 112455666777889999


Q ss_pred             EEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCC---CCchhh--HHH-----------HHHHhCC-HHHHH
Q 041046          104 VAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGA---TLPDYF--TAL-----------FRAKVGS-ATARR  164 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl---~~p~~g--~~~-----------l~~~~g~-~~~a~  164 (243)
                      ...+-|.|.+.|..|++++|  .|++.++ +.+-+-....|.   ...+.-  +..           +.+.-|. .....
T Consensus       100 ~t~~~G~AaS~as~il~aG~~gkR~~lP~-a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~~e~I~  178 (205)
T 4gm2_A          100 YTYCLGKAYGIACILASSGKKGYRFSLKN-SSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVIS  178 (205)
T ss_dssp             EEEEEEEEETHHHHHHTTSCTTCEEECTT-CEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             EEEEEeeehhHHHHHHhcCCCCCEEecCC-CEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999  5999988 666544333222   012211  111           1111121 22334


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +.+-...-++|+||+++||||+|+.+
T Consensus       179 ~~m~rd~~msa~EA~eyGlID~V~~~  204 (205)
T 4gm2_A          179 NVLERDKYFNADEAVDFKLIDHILEK  204 (205)
T ss_dssp             HHTTSCEEEEHHHHHHTTSCSEECCC
T ss_pred             HHhcCCcccCHHHHHHcCCccEeecC
Confidence            44444555999999999999999876

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=98.31  E-value=2.9e-05  Score=70.67  Aligned_cols=142  Identities=15%  Similarity=0.234  Sum_probs=95.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+.++++.+.+..-+  +|.+..+     .|+.+.+-.         .....+.+.+.+..+  ..-..|
T Consensus       118 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dS-----GGARmqeg~---------~sl~~~~~i~~~~~~--~s~~iP  179 (531)
T 3n6r_B          118 GGSVSETHSKKICKIMDMAMQNGAP--VIGINDS-----GGARIQEGV---------DSLAGYGEVFQRNIM--ASGVVP  179 (531)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECC-----CCBCGGGTH---------HHHHHHHHHHHHHHH--TTTTSC
T ss_pred             cccccHHHHHHHHHHHHHHHHcCCC--EEEEeCC-----CccccCccc---------chhhhHHHHHHHHHH--HhCCCC
Confidence            4589999999999999999987554  5666543     444454311         111111222222222  124699


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH----
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|+.++.+.+       ++.             | +...+.  .+|+.+++++.    
T Consensus       180 ~Isvv~Gp~~GG~a~s~a~~D~vi~~~~~a~i-------~~a-------------G-P~vI~~--~~ge~v~~E~LGGa~  236 (531)
T 3n6r_B          180 QISMIMGPCAGGAVYSPAMTDFIFMVKDSSYM-------FVT-------------G-PDVVKT--VTNEQVSAEELGGAT  236 (531)
T ss_dssp             EEEEECSCCBGGGGHHHHHSSEEEEETTTCBC-------BSS-------------C-HHHHHH--HHCCCCCHHHHHBHH
T ss_pred             EEEEEeCCcchHHHHHhhhCCEEEEecCCceE-------eec-------------C-HHHHHH--HhCCccChhhcchHH
Confidence            99999999999999888889999999864543       332             1 222221  35889999998    


Q ss_pred             ---HHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          179 ---LRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                         .+.|++|.++++.++..+.+.++...+
T Consensus       237 ~h~~~sG~~d~v~~~e~~a~~~~r~lls~L  266 (531)
T 3n6r_B          237 THTRKSSVADAAFENDVEALAEVRRLVDFL  266 (531)
T ss_dssp             HHHHTTSCCSEEESSHHHHHHHHHHHHTTS
T ss_pred             HHhhccCcceEEeCCHHHHHHHHHHHHHhc
Confidence               899999999998556666666666554

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=98.22  E-value=6e-05  Score=69.04  Aligned_cols=143  Identities=16%  Similarity=0.198  Sum_probs=94.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.+..-+  +|.+..     |.|+.+.+-..         ....+.+-+.+..+ + .-..|
T Consensus       121 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~d-----SGGARmqeg~~---------sl~~~~~i~~~~~~-~-s~~iP  182 (548)
T 2bzr_A          121 GGSLGEVYGEKIVKVQELAIKTGRP--LIGIND-----GAGARIQEGVV---------SLGLYSRIFRNNIL-A-SGVIP  182 (548)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSCCGGGTTH---------HHHHHHHHHHHHHH-T-TTTSC
T ss_pred             cCCCChhHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCCchhHHH---------HHHHHHHHHHHHHH-h-cCCCc
Confidence            4589999999999999999987554  666665     55666654221         11122222222222 1 34599


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHH-----H
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGE-----E  177 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e  177 (243)
                      .|+++.|+|.||+......||++|+.++.+.++       +.             | +...+.  .+|+.++.+     +
T Consensus       183 ~Isvv~gp~~GG~a~s~al~D~ii~~~~~a~i~-------~a-------------G-P~vI~~--~~ge~v~~e~lggae  239 (548)
T 2bzr_A          183 QISLIMGAAAGGHVYSPALTDFVIMVDQTSQMF-------IT-------------G-PDVIKT--VTGEEVTMEELGGAH  239 (548)
T ss_dssp             EEEEECSEEESGGGHHHHHSSEEEEETTTCEEE-------SS-------------C-HHHHHH--HHCCCCCHHHHHBHH
T ss_pred             EEEEecCCCchHHHHHHHhCCeEEeccCceeEE-------ec-------------c-HHHHHH--HhCCcCChHhcccHH
Confidence            999999999999998888999999998745443       32             1 222221  246777754     2


Q ss_pred             --HHHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          178 --ALRMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       178 --A~~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                        +.+.|++|.++++..++.+.+.++...+-
T Consensus       240 ~h~~~sG~~d~vv~d~~~~~~~~r~lls~lp  270 (548)
T 2bzr_A          240 THMAKSGTAHYAASGEQDAFDYVRELLSYLP  270 (548)
T ss_dssp             HHHHTSSCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             HHhhccCceeEEeCCHHHHHHHHHHHHHhcC
Confidence              23699999999985667777776665554

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=98.21  E-value=3.3e-05  Score=70.42  Aligned_cols=143  Identities=16%  Similarity=0.235  Sum_probs=96.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.++.-+  +|.+..     |.|+.+.+-..         ....+.+-+....+ + .-..|
T Consensus       108 gGS~g~~~~~Ki~ra~e~A~~~~lP--~I~l~~-----SGGARmqeg~~---------sl~~~~~i~~~~~~-~-s~~iP  169 (523)
T 1on3_A          108 GGSAGETQSTKVVETMEQALLTGTP--FLFFYD-----SGGARIQEGID---------SLSGYGKMFFANVK-L-SGVVP  169 (523)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTHH---------HHHHHHHHHHHHHH-H-TTTSC
T ss_pred             CCcCcHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhhHHH---------HHHHHHHHHHHHHH-h-cCCCC
Confidence            4589999999999999999987554  566654     55666654221         11122222333332 2 34599


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHH-----H
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGE-----E  177 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e  177 (243)
                      .|+++.|+|.||+......||++|+.++ +.++       +.             | ++..+.  .+|+.++.+     +
T Consensus       170 ~Isvv~gp~~GG~a~s~~l~D~ii~~~~-a~i~-------~a-------------G-P~vI~~--~~ge~~~~e~lggae  225 (523)
T 1on3_A          170 QIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------IT-------------G-PQVIKS--VTGEDVTADELGGAE  225 (523)
T ss_dssp             EEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SS-------------C-HHHHHH--HHCCCCCHHHHHSHH
T ss_pred             EEEEEcCCCchHHHHHHhhCCeEEEeCC-CEEE-------ec-------------C-HHHHHH--HhCCcCChHhcccHH
Confidence            9999999999999988899999999988 6554       31             1 222211  246677753     3


Q ss_pred             HH--HcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          178 AL--RMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      .+  +.|++|.++++..++.+.+.++...+-.
T Consensus       226 ~h~~~~G~vd~vv~d~~~~~~~~r~lL~~lp~  257 (523)
T 1on3_A          226 AHMAISGNIHFVAEDDDAAELIAKKLLSFLPQ  257 (523)
T ss_dssp             HHHHTTCCCSEEESSHHHHHHHHHHHHHTSCS
T ss_pred             HHhhccCceEEEeCCHHHHHHHHHHHHHhcCc
Confidence            23  6999999999866777777777666543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=98.19  E-value=6.2e-05  Score=68.67  Aligned_cols=144  Identities=18%  Similarity=0.243  Sum_probs=97.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+..+++.+.+..-+  +|.+..     |.|+.+.+-..         ....+.+.+.+..+ + .-..|
T Consensus       104 gGS~g~~~~~Ki~ra~e~A~~~~~P--~I~l~~-----SGGaRmqeg~~---------sl~~~~~i~~~~~~-~-s~~iP  165 (522)
T 1x0u_A          104 GGSLGETHANKIVRAYELALKVGAP--VVGIND-----SGGARIQEGAL---------SLEGYGAVFKMNVM-A-SGVIP  165 (522)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEC-----CCSBCGGGTHH---------HHHHHHHHHHHHHH-H-TTTSC
T ss_pred             CccccHHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCCChhHHHH---------HHHHHHHHHHHHHH-h-CCCCc
Confidence            4589999999999999999987544  666665     55666654221         11122222233332 2 34699


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCc-ceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHH-----
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKG-VLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGE-----  176 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~-~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----  176 (243)
                      .|+++.|+|.||+......||++|+.++.+ .++       +.             | ++..+.  .+|+.++.+     
T Consensus       166 ~Isvv~gp~~GG~a~s~~l~D~~i~~~~~a~~i~-------~a-------------G-P~vI~~--~~ge~~~~e~lgga  222 (522)
T 1x0u_A          166 QITIMAGPAAGGAVYSPALTDFIIMIKGDAYYMF-------VT-------------G-PEITKV--VLGEEVSFQDLGGA  222 (522)
T ss_dssp             EEEEECSEEEGGGGHHHHHSSEEEEECSTTCEEE-------SS-------------C-HHHHHH--TTCCCCCHHHHHBH
T ss_pred             EEEEEcCCCchHHHHHHhcCCeEEEecCCccEEE-------ec-------------C-HHHHHH--HhCCcCChhhcchH
Confidence            999999999999998889999999998744 443       31             1 222111  346777753     


Q ss_pred             HHH--HcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          177 EAL--RMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       177 eA~--~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      +.+  +.|++|.++++..++.+.+.++...+-.
T Consensus       223 e~~~~~~G~~d~vv~~~~~~~~~~~~ll~~lp~  255 (522)
T 1x0u_A          223 VVHATKSGVVHFMVDSEQEAINLTKRLLSYLPS  255 (522)
T ss_dssp             HHHHHTTCCCSEEESCHHHHHHHHHHHHHHSCS
T ss_pred             HHHhhcCceeEEEeCCHHHHHHHHHHHHHhccc
Confidence            223  6999999999867788888888777654

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=98.12  E-value=4.9e-05  Score=69.50  Aligned_cols=147  Identities=18%  Similarity=0.189  Sum_probs=95.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.+...+.+..+++.+.+..-+  +|.+..+|+..     +..-..... .  .....+    +..-...+.....|
T Consensus       134 gGS~g~~~~~Ki~ra~e~A~~~~lP--vI~l~dSgGAR-----l~~q~~~~~-~--~~~~~~----i~~~~~~ls~~giP  199 (555)
T 3u9r_B          134 GGTYYPLTVKKHLRAQAIALENRLP--CIYLVDSGGAN-----LPRQDEVFP-D--REHFGR----IFFNQANMSARGIP  199 (555)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCCCBC-----GGGGGGTSS-S--TTSTTH----HHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHcCCC--EEEEECCCCCC-----CCCcceeec-c--cccHHH----HHHHHHHHhcCCCC
Confidence            4589999999999999999987544  56665544333     211000000 0  000001    11122244557899


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH----
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.|||......||++|+.++.+.+       ++.             | +...+  ..+|+.+++++.    
T Consensus       200 ~Isvv~G~~~GGga~~~a~~d~vim~e~~a~i-------~~a-------------G-P~vik--~~~ge~~~~e~LGGa~  256 (555)
T 3u9r_B          200 QIAVVMGSCTAGGAYVPAMSDETVMVREQATI-------FLA-------------G-PPLVK--AATGEVVSAEELGGAD  256 (555)
T ss_dssp             EEEEECSCCBGGGGHHHHTSSEEEEETTTCBC-------BSS-------------C-HHHHH--HHHCCCCCHHHHHBHH
T ss_pred             EEEEEecCCCccHHHHHHhCCceEEecCCceE-------EEc-------------c-HHHHH--HHhcCccChhhccchh
Confidence            99999999999999999999999998764533       332             1 22221  136899999988    


Q ss_pred             ---HHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          179 ---LRMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       179 ---~~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                         .+.|++|.++++.++..+.+.++...|-
T Consensus       257 ~h~~~sGv~d~v~~de~~a~~~~r~~ls~Lp  287 (555)
T 3u9r_B          257 VHCKVSGVADHYAEDDDHALAIARRCVANLN  287 (555)
T ss_dssp             HHHHTTCSCSEEESSHHHHHHHHHHHHHTSC
T ss_pred             hhhhccCceeEEeCCHHHHHHHHHHHHHhCC
Confidence               7899999999985555555666655443

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=98.10  E-value=0.00016  Score=60.96  Aligned_cols=145  Identities=10%  Similarity=0.049  Sum_probs=93.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -+++....+.+.++++.+.+..-+  +|.+...|+     +-..+-.         ..... .......+.++.....|.
T Consensus       135 Gs~g~~~~~K~~r~ie~A~~~~lP--lI~l~dsgG-----ar~qEGi---------~sl~q-~aki~~~l~~~s~~~vP~  197 (285)
T 2f9i_B          135 GSMGSVIGEKICRIIDYCTENRLP--FILFSASGG-----ARMQEGI---------ISLMQ-MGKTSVSLKRHSDAGLLY  197 (285)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHTTCC--EEEEEEECS-----CCGGGHH---------HHHHH-HHHHHHHHHHHHHTTCCE
T ss_pred             CcCCHHHHHHHHHHHHHHHHcCCC--EEEEEeCCC-----cchhhhh---------hhHhH-HHHHHHHHHHHHcCCCCE
Confidence            589999999999999999987654  666655443     2222210         00001 122344556666789999


Q ss_pred             EEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcC
Q 041046          104 VAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG  182 (243)
Q Consensus       104 Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~G  182 (243)
                      |+++.|+|.||+.. +++.+|++++.++ +.++       +.-|......+.+.+.           -.--+|+.+.+.|
T Consensus       198 Isvv~g~~~GG~~as~a~~~D~i~a~p~-A~i~-------~aGP~vi~~~~~~~~~-----------e~~~~Ae~~~~~G  258 (285)
T 2f9i_B          198 ISYLTHPTTGGVSASFASVGDINLSEPK-ALIG-------FAGRRVIEQTINEKLP-----------DDFQTAEFLLEHG  258 (285)
T ss_dssp             EEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEE-------SSCHHHHHHHHTSCCC-----------TTTTBHHHHHHTT
T ss_pred             EEEEeCCccHHHHHHhhhCCCEEEEeCC-cEEE-------EcCHHHHHHHhcccch-----------HhHhhHHHHHhcC
Confidence            99999999999865 4789999999877 5544       3123222222222221           0112478888999


Q ss_pred             chhhhcCChHHHHHHHHHHHHHH
Q 041046          183 LVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       183 lv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                      ++|.|+++ +++.+...++...+
T Consensus       259 ~iD~Iv~~-~e~r~~l~~~L~~l  280 (285)
T 2f9i_B          259 QLDKVVHR-NDMRQTLSEILKIH  280 (285)
T ss_dssp             CCSEECCG-GGHHHHHHHHHHHT
T ss_pred             CccEEeCh-HHHHHHHHHHHHHh
Confidence            99999997 66776666665544

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.89  E-value=0.00066  Score=61.93  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=92.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++.....+.+.++++.+.+..-+  +|.+..     |.|+-+.+-..         ....+.+.+.+...  .....|
T Consensus       111 gGS~g~~~~~Ki~r~~e~A~~~~lP--vI~l~d-----SgGAR~qeg~~---------~l~g~~~~~~~~~~--~s~~iP  172 (527)
T 1vrg_A          111 GGSLGEMHAKKIVKLLDLALKMGIP--VIGIND-----SGGARIQEGVD---------ALAGYGEIFLRNTL--ASGVVP  172 (527)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTHH---------HHHHHHHHHHHHHH--HTTTSC
T ss_pred             CccccHHHHHHHHHHHHHHHHcCCC--EEEEEC-----CCCCCccchhH---------HHHHHHHHHHHHHH--hCCCCC
Confidence            4589999999999999999987554  555554     33444443111         11122222333322  255799


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHH-----H
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGE-----E  177 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~-----e  177 (243)
                      +|+++.|+|.|||......||++|+.++.+.       ++++-|              ...+.  .+|+.++.+     +
T Consensus       173 ~Isvv~Gp~~GG~a~s~al~D~vi~~~~~a~-------i~~aGP--------------~vi~~--~~ge~v~~e~lggae  229 (527)
T 1vrg_A          173 QITVIAGPCAGGAVYSPALTDFIVMVDQTAR-------MFITGP--------------NVIKA--VTGEEISQEDLGGAM  229 (527)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETTTCB-------CBSSCH--------------HHHHH--HHCCCCCHHHHHBHH
T ss_pred             EEEEEeCCCchHHHHHHHcCCeEEEecCceE-------EEecCH--------------HHHHH--HhCCCCCccccccHH
Confidence            9999999999999988889999999987443       344212              22111  246666653     2


Q ss_pred             HH--HcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          178 AL--RMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       178 A~--~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                      .+  +.|++|.++++..++.+.+.++...+-
T Consensus       230 ~~~~~~G~vd~vv~d~~~~~~~~~~~Ls~lp  260 (527)
T 1vrg_A          230 VHNQKSGNAHFLADNDEKAMSLVRTLLSYLP  260 (527)
T ss_dssp             HHHHTSCCCSEEESSHHHHHHHHHHHHTTSC
T ss_pred             HHhhcccceEEEecCHHHHHHHHHHHHHhcC
Confidence            22  699999999985667777666655543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=97.76  E-value=0.00028  Score=64.32  Aligned_cols=157  Identities=11%  Similarity=0.062  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -+++++..+...+.++.+.+..- - +|.+...++ |..|.+-+              .......+.+.+..+.....|.
T Consensus       339 G~l~~~~~~K~ar~i~~a~~~~~-P-lv~l~ds~G-~~~G~~~E--------------~~G~~~~~Ak~l~~~~~~~vP~  401 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCDAFNI-P-LISLVDTPG-YVPGTDQE--------------YKGIIRHGAKMLYAFAEATVPK  401 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTTC-C-EEEEEEECC-BCCSHHHH--------------HTTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCcCHHHHHHHHHHHHHHhhCCC-C-EEEEecCCC-CCCchHHH--------------HHHHHHHHHHHHHHHHhCCCCE
Confidence            37999999999999999887644 4 666655433 22222111              1112334566777888899999


Q ss_pred             EEEECcccchhHHHHHHh----ccEEEEecCCcceeecccccCCCCchhhHHHHHHH-hCC--------HHHHHHHHhcc
Q 041046          104 VAAVNGHAAAAGFTLALS----HDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAK-VGS--------ATARRDVLLRA  170 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~-~g~--------~~~a~~l~l~g  170 (243)
                      |++|-|.|.|||+.....    +|+++|.++ +.++       +.-|.+.+..+-+. +-.        .+...++  .-
T Consensus       402 Isvi~g~~~GGg~~~~a~~a~~~D~v~a~p~-A~i~-------v~gpegaa~Il~r~~i~~~~d~~~~~~~l~~~y--~~  471 (522)
T 1x0u_A          402 ITVIVRKSYGGAHIAMSIKSLGADLVYAWPT-AEIA-------VTGPEGAVRILYRKEIQQASNPDDVLKQRIAEY--RK  471 (522)
T ss_dssp             EEEEEEEEEHHHHHHTCCGGGTCSEEEECTT-CEEE-------SSCHHHHHHHHTSSSSSSSSSSSSSSHHHHHHH--HH
T ss_pred             EEEEeCCcccHHHHHhcccccCCCEEEEeCC-CEEE-------ecCHHHHHHHHhhhhhhcccCHHHHHHHHHHHH--HH
Confidence            999999999998866544    999999887 6554       31233333333322 110        1111110  01


Q ss_pred             CCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          171 KKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       171 ~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      .--++..+.+.|+||.|++. .++.+......+.+..+
T Consensus       472 ~~~~~~~~~~~G~iD~II~p-~~tR~~L~~~L~~~~~~  508 (522)
T 1x0u_A          472 LFANPYWAAEKGLVDDVIEP-KDTRRVIVAGLEMLKTK  508 (522)
T ss_dssp             HHSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred             hcCCHHHHHhcCCCcEeECH-HHHHHHHHHHHHHHhhc
Confidence            12456889999999999997 66777666666665444

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=97.53  E-value=0.0025  Score=58.09  Aligned_cols=158  Identities=11%  Similarity=0.067  Sum_probs=99.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++......+.++.+++. .+- +|.+.-.+ .|..|.+-+.              ......+.+++..+.....|+
T Consensus       344 G~~~~~~~~Kaar~i~~a~~~-~~P-lv~lvDtp-G~~~G~~~E~--------------~g~~~~~A~~~~a~~~~~vP~  406 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIRFLDAF-NIP-ILTFVDTP-GYLPGVAQEH--------------GGIIRHGAKLLYAYSEATVPK  406 (527)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCCCHHHHHHHHHHHHHHhhc-CCC-eEEEecCC-CCcCchhhHH--------------hHHHHHHHHHHHHHhcCCCCE
Confidence            379999999999999888765 444 55554433 2333332222              122344566777888899999


Q ss_pred             EEEECcccchhHHHHHHh----ccEEEEecCCcceeecccccCCCCchhhH-HHHHHH-h---CCHHHHHH-HH--hccC
Q 041046          104 VAAVNGHAAAAGFTLALS----HDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAK-V---GSATARRD-VL--LRAK  171 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~-~---g~~~~a~~-l~--l~g~  171 (243)
                      |++|-|.|.|||+.-...    +|+++|.++ +.++       + ++.-|+ ..+-+. +   ..+...++ +.  +.-+
T Consensus       407 isvI~g~~~gGg~~am~~~~~~~d~~~a~p~-a~~~-------V-m~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~  477 (527)
T 1vrg_A          407 ITVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEIA-------V-MGPEGAANIIFKREIEASSNPEETRRKLIEEYKQQ  477 (527)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCcccHHHHHhcCCCCCCCEEEEcCC-CeEE-------e-cCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHh
Confidence            999999999998865543    899999877 5554       4 444443 332221 1   10111111 22  1112


Q ss_pred             CCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          172 KIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       172 ~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      .-++..+.+.|+||.|++. .+..+......+.+..+
T Consensus       478 ~~~p~~~~~~g~iD~II~p-~~tR~~l~~~L~~l~~~  513 (527)
T 1vrg_A          478 FANPYIAASRGYVDMVIDP-RETRKYIMRALEVCETK  513 (527)
T ss_dssp             TSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTC
T ss_pred             hCCHHHHHHcCCCCeeeCH-HHHHHHHHHHHHHHhcC
Confidence            4678899999999999987 56666666665555444

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=97.52  E-value=0.002  Score=58.65  Aligned_cols=157  Identities=11%  Similarity=0.036  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++......+.++.+++. .+- +|.+.-.+ .|..|.+-++              ........+++..+.+...|+|
T Consensus       341 ~~~~~~a~Kaar~i~~~~~~-~iP-lv~lvDtp-Gf~~G~~~E~--------------~Gi~~~~A~~l~a~a~~~vP~i  403 (523)
T 1on3_A          341 CLDINASDKAAEFVNFCDSF-NIP-LVQLVDVP-GFLPGVQQEY--------------GGIIRHGAKMLYAYSEATVPKI  403 (523)
T ss_dssp             CBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEEC-CBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhc-CCC-eEEEEeCC-CcCcchHHHH--------------hhHHHHHHHHHHHHhcCCCCEE
Confidence            79999999999999888765 444 55554433 3444433222              2234456777778888999999


Q ss_pred             EEECcccchhHHHHHHh----ccEEEEecCCcceeecccccCCCCchhhH-HHHHHH-h---CCHHHHHH-HHh--ccCC
Q 041046          105 AAVNGHAAAAGFTLALS----HDYVIMRRDKGVLYMSEVDIGATLPDYFT-ALFRAK-V---GSATARRD-VLL--RAKK  172 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~-~~l~~~-~---g~~~~a~~-l~l--~g~~  172 (243)
                      ++|-|.+.|||+.-...    +|+++|.++ +.+       ++ ++.-|. ..+-+. +   ......++ +.-  .-+.
T Consensus       404 tvI~g~~~Ggg~~am~~~~~~~d~~~a~p~-a~~-------~V-m~pegaa~Il~r~~~~~~~d~~~~~~~~~~~y~~~~  474 (523)
T 1on3_A          404 TVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AEI-------AV-MGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAF  474 (523)
T ss_dssp             EEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CEE-------ES-SCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCcccHHHHHhcccCCCCCEEEEcCC-CeE-------Ee-cCHHHHHHHHhhhhhhcccCHHHHHHHHHHHHHHhh
Confidence            99999999998865544    888888877 554       44 444443 332221 1   10111111 221  1113


Q ss_pred             CCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       173 ~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      -++..+.+.|+||.|++. .+..+......+.+..+
T Consensus       475 ~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~~~  509 (523)
T 1on3_A          475 NTPYVAAARGQVDDVIDP-ADTRRKIASALEMYATK  509 (523)
T ss_dssp             SSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGGC
T ss_pred             CCHHHHHhcCCCCEeeCH-HHHHHHHHHHHHHHhcC
Confidence            677889999999999987 56666666666655544

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=97.52  E-value=0.0021  Score=59.29  Aligned_cols=157  Identities=8%  Similarity=0.014  Sum_probs=104.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++......+.++.+++. .+- +|.|...+ .|..|.+-+              .......+.+++..+.....|+|
T Consensus       386 ~l~~~~a~Kaarfi~~c~~~-~iP-lv~lvDtp-Gf~~G~~~E--------------~~Gi~~~gA~~~~a~a~a~vP~i  448 (587)
T 1pix_A          386 KLYRQGLVKMNEFVTLCARD-RLP-IVWIQDTT-GIDVGNDAE--------------KAELLGLGQSLIYSIQTSHIPQF  448 (587)
T ss_dssp             EECHHHHHHHHHHHHHHHHT-TCC-EEEEECCC-EECCSHHHH--------------HTTHHHHHHHHHHHHHTCCCCEE
T ss_pred             CcCHHHHHHHHHHHHHhhcC-CCC-eEEEecCC-CCCCcHHHH--------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence            69999999999999877654 455 66665543 344444322              22335567888999999999999


Q ss_pred             EEECcccchhHHHHHHh----c--cEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHH--------------HH
Q 041046          105 AAVNGHAAAAGFTLALS----H--DYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATA--------------RR  164 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~----~--D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~--------------a~  164 (243)
                      ++|-|.+.|||+.-...    +  |+++|.++ +.++       + +++-|...+..+.. ...              ..
T Consensus       449 tvI~g~~~Ggg~~am~~~~~~~~~d~~~a~p~-A~~~-------V-m~pegaa~Il~r~~-~~~~~~~g~~~~~~~~~~~  518 (587)
T 1pix_A          449 EITLRKGTAAAHYVLGGPQGNDTNAFSIGTAA-TEIA-------V-MNGETAATAMYSRR-LAKDRKAGKDLQPTIDKMN  518 (587)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEEEECTT-CEEE-------S-SCHHHHHHHHHHHH-HHHHHHTTCCCHHHHHHHH
T ss_pred             EEEcCCCccHHHHHhcCcccCcccceeeeccC-CeEe-------c-CCHHHHHHHHHhhh-hhhhhhcCCChHHHHHHHH
Confidence            99999999998654432    5  99999887 6554       4 44444332222111 110              01


Q ss_pred             HHH-hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          165 DVL-LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       165 ~l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      ++. ..-+..++..|.+.|+||.|+++ .+.........+.+..+|
T Consensus       519 ~~~~~y~~~~~p~~aa~~g~iD~VI~p-~~tR~~l~~~L~~~~~~~  563 (587)
T 1pix_A          519 NLIQAFYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQNP  563 (587)
T ss_dssp             HHHHHHHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhCCHHHHHhcCCCccccCH-HHHHHHHHHHHHHHhcCC
Confidence            111 01125889999999999999998 667777777777776665

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=97.35  E-value=0.0038  Score=57.15  Aligned_cols=157  Identities=8%  Similarity=-0.001  Sum_probs=97.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++......+.++.+++.. +- +|.+-..+ .|..|.+-++              .-......+++..+.....|+
T Consensus       361 G~l~~~~a~Kaar~i~~a~~~~-iP-lv~lvDt~-Gf~~G~~~E~--------------~Gi~~~ga~~l~a~~~~~VP~  423 (548)
T 2bzr_A          361 GCLDINASEKAARFVRTCDCFN-IP-IVMLVDVP-GFLPGTDQEY--------------NGIIRRGAKLLYAYGEATVPK  423 (548)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEEC-CBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCCCHHHHHHHHHHHHHHHhcC-CC-EEEEeecc-CCCCChHHHH--------------hhHHHHHHHHHHHHhCCCCCE
Confidence            3799999999999999987654 44 55554433 3444443322              122334566777778899999


Q ss_pred             EEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC-H------H--HH-HHHHh-
Q 041046          104 VAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS-A------T--AR-RDVLL-  168 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~-~------~--~a-~~l~l-  168 (243)
                      |++|-|.|.|||+....    .+|+++|.++ +.++       + .++-|...+..+--. .      .  .. .++.- 
T Consensus       424 isvI~g~~~Ggg~~am~~~~~~~d~~~awp~-a~i~-------V-mgpegaa~Il~r~~~~~~~~~g~~~~~~~~~~~~~  494 (548)
T 2bzr_A          424 ITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQIA-------V-MGASGAVGFVYRQQLAEAAANGEDIDKLRLRLQQE  494 (548)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTCCC----------CHHHHHHHHHH
T ss_pred             EEEEeCCcchHHHHHhccccCCCCEEEEcCC-CEEE-------e-cCHHHHHHHHhhhHHhhhhcccccHHHHHHHHHHH
Confidence            99999999999886553    4999999887 5554       4 444444333322210 1      0  11 11211 


Q ss_pred             -ccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          169 -RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       169 -~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                       .-..-++..+.+.|+||.|+++ .+.........+.+..
T Consensus       495 y~~~~~~p~~~a~~g~iD~II~p-~~tR~~l~~~L~~l~~  533 (548)
T 2bzr_A          495 YEDTLVNPYVAAERGYVGAVIPP-SHTRGYIGTALRLLER  533 (548)
T ss_dssp             HHHHHSBSHHHHHTTSSSEECCG-GGHHHHHHHHHHHTTT
T ss_pred             HHHhhCCHHHHHhcCCCceeeCH-HHHHHHHHHHHHHHhc
Confidence             0112456789999999999987 5555555555554443

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=97.33  E-value=0.0039  Score=57.39  Aligned_cols=163  Identities=12%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHh-cccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQA-AGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      .-++.+...+.+.++++.+.+..-+  +|.+..+|+.+..  +-++... ...       ..+    +..-...+.....
T Consensus       119 gGS~g~~~~~Ki~Ra~e~A~~~~lP--vI~l~dSgGArl~--~qe~~~~~l~~-------~g~----if~~~~~ls~~~i  183 (588)
T 3gf3_A          119 AGAWVPGQAENLIRCSDAAKMMHLP--LIYLLNCSGVEFP--NQDKVYPNRRG-------GGT----PFFRNSELNQLGI  183 (588)
T ss_dssp             GGCBCTTHHHHHHHHHHHHHHHTCC--EEEEECCCCBCGG--GHHHHSSSTTS-------TTH----HHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCC--EEEEEcCCCcCcc--cccccccchhh-------HHH----HHHHHHHHhcCCC
Confidence            4578899999999999999987544  5666554443331  0011100 000       001    1112233445689


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeeccccc--CCCCchhhHHHHHH---HhCCHHHHHHHHhccCCCCHH
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDI--GATLPDYFTALFRA---KVGSATARRDVLLRAKKIKGE  176 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~--Gl~~p~~g~~~l~~---~~g~~~~a~~l~l~g~~~~a~  176 (243)
                      |+|+++.|+|.|||...++++|++++.++ +.+++....+  |+ -|. | ...+.   .+. .....+-..+.+.+.+.
T Consensus       184 P~Isvv~Gp~~gGgAy~a~~~~vim~~~~-a~i~~aGP~vI~~~-~p~-g-~~~~~~~~~~~-~~~~ge~~vs~eeLGGa  258 (588)
T 3gf3_A          184 PVIVGIYGTNPAGGGYHSISPTILIAHQD-ANMAVGGAGILSGM-NPK-G-YIDDEAAEQII-AAQIENSKLKVPAPGSV  258 (588)
T ss_dssp             CEEEEECSEEETHHHHHHHSSSEEEEETT-CEEESSCCC------------------CHHHH-HHHHHHHHTTCCCTTBH
T ss_pred             CEEEEEeCCCCchhhhHhhCCeEEEEECC-cEEEecChhhhccc-Ccc-c-cccccchhhhh-hhhccccccChhhccch
Confidence            99999999999998877777888887666 6665433221  11 010 0 11111   011 11111222466777777


Q ss_pred             HHH--HcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          177 EAL--RMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       177 eA~--~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                      +.+  ..|++|.++++.++..+.+.++...|
T Consensus       259 ~~h~~~sGv~d~~a~de~~al~~~r~~ls~L  289 (588)
T 3gf3_A          259 PIHYDETGFFREVYQNDLGVIDGIKKYISYL  289 (588)
T ss_dssp             HHHTTTSCCSCEEESSHHHHHHHHHHHHHTS
T ss_pred             hhhccccccceEEeCCHHHHHHHHHHHHHhC
Confidence            766  59999999998566666666666554

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=97.27  E-value=0.004  Score=56.72  Aligned_cols=157  Identities=11%  Similarity=0.107  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++......+.++.+++.. +- +|.|.-.++ |..|.+-+              .........+++.++.....|+
T Consensus       346 G~l~~~~a~Kaarfi~~c~~~~-iP-lv~lvDtpG-f~~G~~~E--------------~~gi~~~~Ak~l~a~a~a~vP~  408 (530)
T 3iav_A          346 GCLDITASEKAARFVRTCDAFN-VP-VLTFVDVPG-FLPGVDQE--------------HDGIIRRGAKLIFAYAEATVPL  408 (530)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECC-BCCCHHHH--------------HTTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCCCHHHHHHHHHHHHHHHhcC-CC-EEEEeeCCC-CCccHHHH--------------HhhHHHHHHHHHHHHHhCCCCE
Confidence            3799999999999998888754 44 566654433 55554322              2334556788888999999999


Q ss_pred             EEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhh-HHHHHHH-hCC-----HHHHHHHH--hcc
Q 041046          104 VAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK-VGS-----ATARRDVL--LRA  170 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~-~g~-----~~~a~~l~--l~g  170 (243)
                      |++|-|.+.|||+....    ..|+++|.++ +.++       + ++.-| +..+.+. +-.     ...-.++.  +.-
T Consensus       409 itvI~g~~~GGa~~am~~~~~~~d~~~awp~-a~~~-------V-m~~egaa~il~r~~~~~~~~d~~~~~~~~~~~y~~  479 (530)
T 3iav_A          409 ITVITRKAFGGAYVVMGSKHLGADLNLAWPT-AQIA-------V-MGAQGAVNILHRRTIADAGDDAEATRARLIQEYED  479 (530)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHTSTTTSTTCTTCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcchHHHHHhcCCCCCCCEEEEcCC-ceEe-------c-CCHHHHHHHHhhhhhhhcccCHHHHHHHHHHHHHH
Confidence            99999999997774332    2799999887 6554       4 44444 3333221 210     01111111  111


Q ss_pred             CCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          171 KKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       171 ~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      +.-++..|.+.|++|.|+++ .+.........+.+..
T Consensus       480 ~~~~p~~aa~~~~vD~VIdP-~~TR~~l~~~l~~~~~  515 (530)
T 3iav_A          480 ALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLRT  515 (530)
T ss_dssp             HHSSSHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHhcCCCCcccCH-HHHHHHHHHHHHHHhc
Confidence            22478888899999999998 5555555544444433

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=97.19  E-value=0.0079  Score=54.76  Aligned_cols=154  Identities=12%  Similarity=0.067  Sum_probs=97.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++++......+.++.+++.. +- +|.|.-.++ |..|.+-              +.........+++.++.....|+
T Consensus       352 G~l~~~~a~Kaarfi~lcd~~~-iP-lv~lvDtpG-f~~G~~~--------------E~~Gi~~~gAk~l~a~a~a~VP~  414 (531)
T 3n6r_B          352 GCLDIDSSRKAARFVRFCDAFE-IP-LLTLIDVPG-FLPGTSQ--------------EYGGVIKHGAKLLYAYGEATVPM  414 (531)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECS-BCCSHHH--------------HHTTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCCCHHHHHHHHHHHHHhhccC-CC-EEEEeCCCC-CCCCHHH--------------HHhhHHHHHHHHHHHHHhCCCCE
Confidence            3799999999999998887654 44 566554332 3333322              22233556788888999999999


Q ss_pred             EEEECcccchhHHHHHHh----ccEEEEecCCcceeecccccCCCCchhh-HHHHHH-HhCC----HHHHHHHHhccCCC
Q 041046          104 VAAVNGHAAAAGFTLALS----HDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KVGS----ATARRDVLLRAKKI  173 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~~----~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~g~----~~~a~~l~l~g~~~  173 (243)
                      |++|-|.+.|||+.-...    +|+++|.++ +.++       + ++.-| +..+-+ .+-.    .+...+  +.-+.-
T Consensus       415 itvI~g~~~Ggg~~am~~~~~~~d~~~awp~-A~i~-------V-m~pegaa~Il~r~~~~~~~~~~~~~~~--y~~~~~  483 (531)
T 3n6r_B          415 VTVITRKAYGGAYVVMSSKHLRADFNYAWPT-AEVA-------V-MGAKGATEIIHRGDLGDPEKIAQHTAD--YEERFA  483 (531)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEEE-------S-SCHHHHHHHHCCTTTTSTTHHHHHHHH--HHHHHS
T ss_pred             EEEEcCCccchhhhhccCccCCCCeEEEcCC-ceEe-------c-CCHHHHHHHHhcccccchhHHHHHHHH--HHHHhc
Confidence            999999999998865443    899999887 5554       4 34344 333322 2210    111111  112225


Q ss_pred             CHHHHHHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          174 KGEEALRMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       174 ~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                      ++..|.+.|++|.|+++ .+.........+.+.
T Consensus       484 ~p~~aa~~~~vD~vIdP-~~TR~~l~~~l~~~~  515 (531)
T 3n6r_B          484 NPFVASERGFVDEVIQP-RSTRKRVARAFASLR  515 (531)
T ss_dssp             SSHHHHHHTSSSEECCG-GGHHHHHHHHHHTTT
T ss_pred             CHHHHHhcCccCcccCH-HHHHHHHHHHHHHHh
Confidence            67788899999999998 555555444444333

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=96.86  E-value=0.0032  Score=59.24  Aligned_cols=81  Identities=11%  Similarity=0.005  Sum_probs=55.2

Q ss_pred             CCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC--CHH
Q 041046           99 LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI--KGE  176 (243)
Q Consensus        99 ~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~a~  176 (243)
                      ...|+|++|.|+|.|||..+...||++|++++ +.       ++++-|..    +...            +|+.+  +++
T Consensus       245 ~~IPqIsvV~G~c~GGgAY~paL~D~vImv~~-s~-------ifltGP~v----Ik~~------------tGeeV~~s~e  300 (758)
T 3k8x_A          245 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QP-------IILTGAPA----INKM------------LGREVYTSNL  300 (758)
T ss_dssp             TTSCEEEEECSCEETHHHHHHHHTCEEEEETT-CC-------EESSCHHH----HHHH------------HTSCCCSCTH
T ss_pred             cCCCEEEEEccCCchHHHHHHhhCCEEEEECC-ce-------EEEeCHHH----HHHH------------hCCccccCch
Confidence            57899999999999999999999999999987 43       33321222    1111            35544  332


Q ss_pred             H------HHHcCchhhhcCChHHHHHHHHHHHH
Q 041046          177 E------ALRMGLVQAAYDSEEQVAEASMRLAK  203 (243)
Q Consensus       177 e------A~~~Glv~~v~~~~~~l~~~a~~~a~  203 (243)
                      +      ..+.|++|.++++.++..+.++++..
T Consensus       301 eLGGA~vh~~sGvad~va~dd~eal~~ir~lLs  333 (758)
T 3k8x_A          301 QLGGTQIMYNNGVSHLTAVDDLAGVEKIVEWMS  333 (758)
T ss_dssp             HHHSHHHHTTTTSSSEEESSHHHHHHHHHHHHT
T ss_pred             hcchhhHHHhcCCeeEEecCHHHHHHHHHHHHh
Confidence            2      34799999999985555555555443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=96.73  E-value=0.024  Score=51.90  Aligned_cols=158  Identities=11%  Similarity=-0.005  Sum_probs=96.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++..+...+.++.+++.. +- +|.|...++ |..|.+-+              .......+.+++.++.....|+|
T Consensus       367 ~l~~~~a~Kaarfi~~c~~~~-iP-lv~lvDtpG-f~~G~~~E--------------~~Gi~~~gAk~~~a~~~a~vP~i  429 (555)
T 3u9r_B          367 ILFAEAAQKGAHFIELACQRG-IP-LLFLQNITG-FMVGQKYE--------------AGGIAKHGAKLVTAVACARVPKF  429 (555)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHT-CC-EEEEEEECC-BCCSHHHH--------------HTTHHHHHHHHHHHHHHCCSCEE
T ss_pred             ccCHHHHHHHHHHHHHHhcCC-CC-EEEEecCcC-CCCCHHHH--------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence            589999999999999888654 44 666665443 44443222              12234457788889999999999


Q ss_pred             EEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhh-HHHHH---H-Hh---CC---HHH---HHH-
Q 041046          105 AAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR---A-KV---GS---ATA---RRD-  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~---~-~~---g~---~~~---a~~-  165 (243)
                      ++|-|.++|+|..-..    .+|+++|.++ +.++       + .++-| +..+.   + .+   |.   ...   .++ 
T Consensus       430 tvi~g~~~Ggg~~am~~~~~~~d~~~a~p~-A~i~-------V-mgpegaa~il~~~~~~~~~~~g~~~~~~~~~~~~~~  500 (555)
T 3u9r_B          430 TVLIGGSFGAGNYGMCGRAYDPRFLWMWPN-ARIG-------V-MGGEQAAGVLAQVKREQAERAGQQLGVEEEAKIKAP  500 (555)
T ss_dssp             EEEEEEEETTHHHHTTCGGGCCSEEEECTT-CEEE-------S-SCHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred             EEEeCCccchhhHhhcCccCCCCeEEEcCC-cEEE-------c-CCHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHHH
Confidence            9999999988764332    3799999877 6554       4 33333 33222   1 01   00   110   000 


Q ss_pred             HH-hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          166 VL-LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       166 l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      +. ..-+..++-.|.+.|++|.|+++ .+.........+.+..++
T Consensus       501 ~~~~y~~~~~p~~aa~r~~vD~vIdP-~~TR~~l~~~l~~~~~~~  544 (555)
T 3u9r_B          501 ILEQYEHQGHPYYSSARLWDDGVIDP-AQTREVLALALSAALNAP  544 (555)
T ss_dssp             HHHHHHHHHSHHHHHHTTSSSCBCCG-GGHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCHHHHhhccccCcccCh-HHHHHHHHHHHHHHhcCC
Confidence            11 11122477888899999999988 555555555444444443

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=96.46  E-value=0.0079  Score=57.02  Aligned_cols=83  Identities=12%  Similarity=0.047  Sum_probs=56.6

Q ss_pred             CCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC--C--
Q 041046           99 LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI--K--  174 (243)
Q Consensus        99 ~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~--  174 (243)
                      ...|+|++|.|.|.|||..++..||++|+.++ +.+       +++-|.    .+...+            |+.+  +  
T Consensus       258 ~~iP~IsvV~G~~~GGgAy~~~lgD~vI~~~~-a~i-------~ltGp~----vi~~~~------------Ge~vy~s~e  313 (793)
T 2x24_A          258 DEIVTISMVSCRALGIGAYLVRLGQRVIQVEN-SHI-------ILTGAT----ALNKVL------------GRDVYTSNN  313 (793)
T ss_dssp             HHSCEEEEECSEEETHHHHHHHHTCCEEEETT-CEE-------ESSCHH----HHHHHH------------SSCCCSCHH
T ss_pred             CCCCEEEEEecCCchHHHHHHhhCCeEEEecc-ccE-------EecCHH----HHHHhc------------CCcccCChh
Confidence            47999999999999999999999999999987 543       332121    122222            3333  2  


Q ss_pred             ----HHHHHHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          175 ----GEEALRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       175 ----a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                          ++-+.+.|++|.++++..+..+.+.++...+
T Consensus       314 ~LGGa~v~~~~Gv~d~vv~dd~ea~~~ir~~Lsyl  348 (793)
T 2x24_A          314 QLGGVQIMHHNGVSHVTVPDDFEGVCTILEWLSYM  348 (793)
T ss_dssp             HHHSHHHHTTTTSCSEEESSHHHHHHHHHHHHTTS
T ss_pred             hhccHHHHHhcCceEEEeCCHHHHHHHHHHHHHhc
Confidence                2226679999999998555555555554433

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=96.46  E-value=0.057  Score=49.73  Aligned_cols=158  Identities=9%  Similarity=0.047  Sum_probs=102.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++....-.+.++.+++. .+- +|.|...+ .|..|.+-+              .........+++.++.++.+|.|
T Consensus       388 ~l~~~~a~Kaarfi~lcd~f-~iP-lv~lvDtp-Gf~~G~~aE--------------~~Gi~~~gAk~l~a~a~a~VP~i  450 (588)
T 3gf3_A          388 KLYRQGLIKMNEFVTLCARD-RIP-LIWLQDTT-GIDVGDEAE--------------KAELLGLGQSLIYSIENSKLPSL  450 (588)
T ss_dssp             EECHHHHHHHHHHHHHHHHT-TCC-EEEEECCC-EECCSHHHH--------------HTTHHHHHHHHHHHHHHHCSCEE
T ss_pred             CcCHHHHHHHHHHHHHhhhc-CCC-eEEEecCC-CCCCCHHHH--------------HHHHHHHHHHHHHHHHhCCCCEE
Confidence            68899999999999988875 444 66665543 455554332              22335567888899999999999


Q ss_pred             EEECcccchhHHHHHHh------ccEEEEecCCcceeecccccCCCCchhh-HHHHH-HHhC---C--H------HHHHH
Q 041046          105 AAVNGHAAAAGFTLALS------HDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR-AKVG---S--A------TARRD  165 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~------~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~-~~~g---~--~------~~a~~  165 (243)
                      ++|-|.+.|||......      +|+++|.++ +.+       ++ +++-| +..+- +.+-   .  .      ....+
T Consensus       451 tvI~g~~~Ggg~~am~~~~~~~~~~~~~awp~-A~~-------sV-m~pEgaa~Il~~~~~~~~~~~~~~~~~~~~~~~~  521 (588)
T 3gf3_A          451 EITIRKASAAAHYVLGGPQGNNTNVFSIGTGA-CEY-------YV-MPGETAANAMYSRKLVKAKKAGEDLQPIIGKMND  521 (588)
T ss_dssp             EEESSEEETTHHHHTTCTTCTTTEEEEEECTT-CEE-------ES-SCHHHHHHHHHHHHHHHC-------CHHHHHHHH
T ss_pred             EEEcCCccHHHHHHhcccccCCccceEEECCC-ceE-------Ee-CCHHHHHHHHhhhHHhhhhccccccchHHHHHHH
Confidence            99999999987753332      247888777 555       44 44444 33322 2221   0  0      01111


Q ss_pred             HH-hccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          166 VL-LRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       166 l~-l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      +. ..-+..++-.|.+.|++|.|+++ .+.......+.....+.|
T Consensus       522 ~~~~y~~~~~p~~aA~r~~vD~VIdP-~~TR~~l~~~~~~~~~~p  565 (588)
T 3gf3_A          522 MIQMYTDKSRPKYCTEKGMVDEIVDM-TEVRPYIQAFTEAAYQNP  565 (588)
T ss_dssp             HHHHHHHTTSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhCCHHHHHhcCCCCeeeCH-HHHHHHHHHHHHHHHcCC
Confidence            11 11234689999999999999998 667777777776666554

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=92.80  E-value=1.2  Score=42.43  Aligned_cols=89  Identities=12%  Similarity=0.131  Sum_probs=61.5

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++......+.+..+++. .+- +|.|... ..|..|.+-              +.........+++.++..+.+|+|
T Consensus       463 ~l~~~~a~KaarfI~~cd~f-~iP-lv~LvDt-pGf~~G~~a--------------E~~Gi~~~gAkll~A~a~a~VP~i  525 (793)
T 2x24_A          463 VWFPDSAYKTAQAIKDFNRE-KLP-LMIFANW-RGFSGGMKD--------------MYDQVLKFGAYIVDGLRKYRQPVL  525 (793)
T ss_dssp             EECHHHHHHHHHHHHHHHTT-TCC-EEEECCB-CEECCSHHH--------------HHTTHHHHHHHHHHHHHTCCSCEE
T ss_pred             cccHHHHHHHHHHHHHhccC-CCC-EEEEecC-CCCCCCHHH--------------HHhhHHHHHHHHHHHHHhcCCCEE
Confidence            68999999999999999754 444 6666543 345555432              223345567889999999999999


Q ss_pred             EEE--CcccchhHHHHH---HhccE--EEEecC
Q 041046          105 AAV--NGHAAAAGFTLA---LSHDY--VIMRRD  130 (243)
Q Consensus       105 a~v--~G~a~G~G~~la---~~~D~--~ia~~~  130 (243)
                      +.|  .|.+.||++.++   +..|+  ++|.++
T Consensus       526 tvI~r~Ge~~GGa~~~~~~~~~~d~~ev~Awp~  558 (793)
T 2x24_A          526 IYIPPYAEVRGGSWAVMDTSINPLCIEMYADRE  558 (793)
T ss_dssp             EEECTTCEEEHHHHHTTCGGGSTTTEEEEEETT
T ss_pred             EEEecCCcccchhHHhhhcccCccHHHHhhhcc
Confidence            999  899887766433   23454  455544

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=89.88  E-value=1.1  Score=42.18  Aligned_cols=89  Identities=15%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++......+.++.+++...+- +|.|... ..|..|.+-+              .........+++.++..++.|+|
T Consensus       448 ~l~pe~a~KaArfI~lcd~~f~iP-Lv~LvDt-pGf~~G~~aE--------------~~Gi~k~gAkll~A~a~a~VP~i  511 (758)
T 3k8x_A          448 VWHPNSAFKTAQAINDFNNGEQLP-MMILANW-RGFSGGQRDM--------------FNEVLKYGSFIVDALVDYKQPII  511 (758)
T ss_dssp             EECHHHHHHHHHHHHHHHHTSCCC-EEECCCC-CEECCSHHHH--------------HTTHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHhhhccCCC-EEEEecC-CCCCCCHHHH--------------HccHHHHHHHHHHHHHhCCCCEE
Confidence            688999999999999998734555 6666543 4465554322              23345567889999999999999


Q ss_pred             EEEC--cccchhHHHHHHh----ccE--EEEecC
Q 041046          105 AAVN--GHAAAAGFTLALS----HDY--VIMRRD  130 (243)
Q Consensus       105 a~v~--G~a~G~G~~la~~----~D~--~ia~~~  130 (243)
                      +.|-  |.+.||++ ++++    +|+  ++|.++
T Consensus       512 tVI~RkGe~~GGA~-~am~~~~~ad~~~v~Awp~  544 (758)
T 3k8x_A          512 IYIPPTGELRGGSW-VVVDPTINADQMEMYADVN  544 (758)
T ss_dssp             EEECTTCEEETHHH-HTTCGGGSTTTEEEEEETT
T ss_pred             EEEecCCccchHHH-HHhCcccCCCHHHHhcCCC
Confidence            9998  99988877 5554    444  666555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	243
d1mj3a_	260	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat	3e-14
d1uiya_	253	c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {The	2e-07
d1dcia_	275	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	3e-06
d1pjha_	266	c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2	2e-05
d1q52a_	297	c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacter	1e-04

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 260

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.9 bits (165), Expect = 3e-14
 Identities = 36/179 (20%), Positives = 69/179 (38%), Gaps = 16/179 (8%)

Query: 6   KHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNG 63
           K+  V ++ L    +  +         I+ +  A+   + +   G A++ T   K F+ G
Sbjct: 13  KNSSVGLIQL----NRPKALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAG 67

Query: 64  LDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD 123
            D+   Q    +     + L   +        +  +  P +AAVNG+A   G  LA+  D
Sbjct: 68  ADIKEMQNRTFQDCYSGKFLSHWDH-------ITRIKKPVIAAVNGYALGGGCELAMMCD 120

Query: 124 YVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
            +    +K      E+ +G       T      VG + A   ++L   +I  ++A + G
Sbjct: 121 IIYA-GEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAME-MVLTGDRISAQDAKQAG 177

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]} Length = 253

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 13/184 (7%)

Query: 1   MCTLEKHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGK 58
           M  +EK G V V+ L    +  E R    P    S+L A+   +A+     A++ T  GK
Sbjct: 1   MVQVEK-GHVAVVFL----NDPERRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGK 54

Query: 59  FFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTL 118
            FS G DLA+ +                 S   +   +   P PTVAAVNG A A G  L
Sbjct: 55  AFSAGADLAFLERVTELGAEENY--RHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGL 112

Query: 119 ALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA 178
           AL+ D  ++  D+             +    + +    VG   A+  +L   + ++  EA
Sbjct: 113 ALACD--LVVMDEEARLGYTEVKIGFVAALVSVILVRAVGEKAAKDLLLT-GRLVEAREA 169

Query: 179 LRMG 182
             +G
Sbjct: 170 KALG 173

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 275

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 6/162 (3%)

Query: 26  FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAG-----ARE 80
              +    ++    K   ++   + +++ +   F S    +  A       G        
Sbjct: 28  MNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAW 87

Query: 81  RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVD 140
            L  ++  ++     +   P P +AA++G     G  L  + D     +D     + EVD
Sbjct: 88  YLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQDAFF-QVKEVD 146

Query: 141 IGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMG 182
           +G              +G+ +   ++   A+K+  +EAL  G
Sbjct: 147 VGLAADVGTLQRLPKVIGNRSLVNELTFTARKMMADEALDSG 188

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 2e-05
 Identities = 32/214 (14%), Positives = 61/214 (28%), Gaps = 13/214 (6%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           +    G  F++ L       ++           +   +  A         +I +S   F 
Sbjct: 8   SYRIEGPFFIIHL----INPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFS 63

Query: 61  SNGLDLAWAQAAGSRAGARER-----LLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAG 115
           S       A+A G             +   V     V  A +      +  +NG A    
Sbjct: 64  SGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLS 123

Query: 116 FTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKG 175
             L    D V    DK  L     ++G       T              + L+  K  K 
Sbjct: 124 AALVALCDIVYSINDKVYLLYPFANLGLITEGGTTV-SLPLKFGTNTTYECLMFNKPFKY 182

Query: 176 EEALRMGLVQAAYDSEEQVAEA-SMRLAKQMAGR 208
           +     G +   ++     AEA + ++ +++  +
Sbjct: 183 DIMCENGFISKNFNMPSSNAEAFNAKVLEELREK 216

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 35/176 (19%), Positives = 61/176 (34%), Gaps = 16/176 (9%)

Query: 3   TLEKHGDVFVLTLTGSSDVDEHR--FGPSAIDSILSAIAKAKAEATPGSALITTSHGKFF 60
           T  +H D   + +    +  E R  F P  +D +   +  A+     G  L+T +     
Sbjct: 21  TYHRHVDDATVRVA--FNRPEVRNAFRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPK 78

Query: 61  SNGLDL------------AWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTVAAVN 108
             G                +  A+G  A   +           V   +  +P   +  VN
Sbjct: 79  DGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVN 138

Query: 109 GHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARR 164
           G AA  G +L +  D  +  R+      ++ D+G+    Y +A    +VG   AR 
Sbjct: 139 GWAAGGGHSLHVVCDLTLASREYARFKQTDADVGSFDGGYGSAYLARQVGQKFARE 194

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	243
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	100.0
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	100.0
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	100.0
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	100.0
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	100.0
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	100.0
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	100.0
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	100.0
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	100.0
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	100.0
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	98.49
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	98.44
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	98.36
d1xnya1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.33
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	98.3
d2a7sa1	258	Propionyl-CoA carboxylase complex B subunit, PccB	98.26
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	98.16
d1vrga1	251	Propionyl-CoA carboxylase complex B subunit, PccB	98.14
d1on3a1	253	Methylmalonyl-CoA carboxyltransferase (transcarbox	98.14
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	97.97
d2f9yb1	263	Acetyl-coenzyme A carboxylase carboxyl transferase	97.9
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	97.52
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	97.46
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	97.41
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	97.3
d1uyra1	333	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	97.16
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	97.1
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	96.52
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	94.09
d1th8b_	115	Anti-sigma factor antagonist SpoIIaa {Bacillus ste	82.11

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=100.00  E-value=1.4e-51  Score=340.47  Aligned_cols=219  Identities=21%  Similarity=0.301  Sum_probs=202.9

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      ||..+.+|+|++|+||+|+  +.|++|.+|+.+|.++++++++|++++ +||++|.| ++||+|.|++++.....    .
T Consensus         1 ~~~~~~~d~I~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~i~-~vVl~~~g~~~F~aG~Dl~~~~~~~~----~   73 (230)
T d2a7ka1           1 MVFEENSDEVRVITLDHPN--KHNPFSRTLETSVKDALARANADDSVR-AVVVYGGAERSFSAGGDFNEVKQLSR----S   73 (230)
T ss_dssp             CEEEEEETTEEEEEECCSS--TTCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEECCTTSCSBCBSCHHHHHTC-C----H
T ss_pred             CEEEEecCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCccc-ccceeccchhhhhhhccccccccccc----c
Confidence            4566778999999999997  899999999999999999999999999 88888876 89999999999876433    4


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGS  159 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~  159 (243)
                      +...++.+.+.+++.++.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++|+.++++++| 
T Consensus        74 ~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~l~~~iG-  150 (230)
T d2a7ka1          74 EDIEEWIDRVIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMAST-ANFVMPELKHGI-GCSVGAAILGFTHG-  150 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTC-CCHHHHHHHHHHHC-
T ss_pred             cccccchhhhhhhhhcccchhcceeeecccccccccccchhccchhhcccc-chhhhccccccc-cccccccccccccc-
Confidence            556677888999999999999999999999999999999999999999998 899999999999 79999889999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhcc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLGL  232 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~~  232 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  +.++..+|+.+++.+.+.+++
T Consensus       151 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~ia~~~--~~a~~~~K~~l~~~~~~~l~~  220 (230)
T d2a7ka1         151 FSTMQEIIYQCQSLDAPRCVDYRLVNQVVES-SALLDAAITQAHVMASYP--ASAFINTKRAVNKPFIHLLEQ  220 (230)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTCCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchHHHHHHhhhcccCCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHHH
Confidence            9999999999999999999999999999997 899999999999999999  999999999999988877774

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-50  Score=332.81  Aligned_cols=220  Identities=18%  Similarity=0.233  Sum_probs=196.0

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||+|+  +.|++|.+++.+|.++++++++|+.+  +||++|.|++||+|.|++++..... .....
T Consensus         4 ~i~~~~~~gi~~Itlnrp~--~~Nals~~~~~~l~~~l~~~~~d~~v--~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~   78 (245)
T d2f6qa1           4 TLVVTSEDGITKIMFNRPK--KKNAINTEMYHEIMRALKAASKDDSI--ITVLTGNGDYYSSGNDLTNFTDIPP-GGVEE   78 (245)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHSSCS--EEEEEESTTCSBCCBCC----CCCT-THHHH
T ss_pred             eEEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHhcCCce--EEeecCCCccccCCccchhhhcccc-ccccc
Confidence            3788999999999999997  89999999999999999999998764  7999999999999999999876433 33344


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ........+.++++++.++|||+||+|||+|+|||++++++||+||++++ ++|++||.++|+ +|++| ++++++++| 
T Consensus        79 ~~~~~~~~~~~~~~~i~~~~kpvIa~v~G~a~GgG~~la~~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~~g-  155 (245)
T d2f6qa1          79 KAKNNAVLLREFVGCFIDFPKPLIAVVNGPAVGISVTLLGLFDAVYASDR-ATFHTPFSHLGQ-SPEGCSSYTFPKIMS-  155 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCSCEEEEECSCEETHHHHGGGGCSEEEEETT-CEEECCTGGGTC-CCCTTHHHHHHHHHC-
T ss_pred             ccchhhhHHHHHHhhhhhcCCceEEEECCccccccccchhhhhhhhhhcc-CeEecccccCCC-Cccccchhhcccccc-
Confidence            55666777889999999999999999999999999999999999999988 899999999999 67665 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      ..++++++++|+.++|+||+++||||+|+++ +++.+++.++|+++++.|  |.+++.+|+.+++.....++
T Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~l~  224 (245)
T d2f6qa1         156 PAKATEMLIFGKKLTAGEACAQGLVTEVFPD-STFQKEVWTRLKAFAKLP--PNALRISKEVIRKREREKLH  224 (245)
T ss_dssp             HHHHHHHHTTCCCEEHHHHHHTTSCSEEECT-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHGGGHHHHH
T ss_pred             cchhhhhcccccccccccccccccccccCCc-chHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhhcCHH
Confidence            9999999999999999999999999999998 889999999999999999  99999999999877655544

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=100.00  E-value=3e-49  Score=333.69  Aligned_cols=219  Identities=19%  Similarity=0.273  Sum_probs=196.7

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++++|++|+||||+  +.|++|.+|+.+|.++++++++|++++ +||++|.|+.||+|.|++++..........+
T Consensus         4 ~i~~~i~dgVa~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~i~-~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~   80 (269)
T d1nzya_           4 AIGHRVEDGVAEITIKLPR--HRNALSVKAMQEVTDALNRAEEDDSVG-AVMITGAEDAFCAGFYLREIPLDKGVAGVRD   80 (269)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEEESTTCSBCCBCGGGSCSSSHHHHHHH
T ss_pred             ceEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeCCcccccchhhHHHHhhcccccchhh
Confidence            3789999999999999997  889999999999999999999999999 9999999999999999998754222122233


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ........++.++.++.++|||+||+|||+|.|||++++++||+||++++ ++|++||..+|+ +|++| +.++++++| 
T Consensus        81 ~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~~~~~g~-~~~~g~~~~l~~~ig-  157 (269)
T d1nzya_          81 HFRIAALWWHQMIHKIIRVKRPVLAAINGVAAGGGLGISLASDMAICADS-AKFVCAWHTIGI-GNDTATSYSLARIVG-  157 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhehhhhhhcCCCceeeeecccHhhhhhh-hhhccccccccc-ccccccccccccccC-
Confidence            44555666789999999999999999999999999999999999999988 899999999999 55554 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ...+++++++|+.++|+||+++||||+|+++ +++.+++.++|+++++.|  +.++..+|+.+++....
T Consensus       158 ~~~a~~l~ltg~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~  223 (269)
T d1nzya_         158 MRRAMELMLTNRTLYPEEAKDWGLVSRVYPK-DEFREVAWKVARELAAAP--THLQVMAKERFHAGWMQ  223 (269)
T ss_dssp             HHHHHHHHHHCCCBCHHHHHHHTSCSCEECH-HHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhccccccccchhHHHHcCCccccccc-cccccchhhhhhhhhhhh--HHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999997 999999999999999999  99999999999876543

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-48  Score=328.11  Aligned_cols=219  Identities=20%  Similarity=0.298  Sum_probs=197.8

Q ss_pred             ceeeEeCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++++++|++|++| +|+  +.|++|.+|+++|.+++++++.| +++ +||++|.|+.||+|+|++++..... ..+..
T Consensus         4 i~v~~~~gi~~i~l~~rp~--~~Nals~~~~~el~~al~~~~~d-~~~-~vvl~g~g~~FsaG~Dl~~~~~~~~-~~~~~   78 (258)
T d2fw2a1           4 IVVKKEDGFTQIVLSTRST--EKNALNTEVIKEMVNALNSAAAD-DSK-LVLFSAAGSVFCCGLDFGYFVRHLR-NDRNT   78 (258)
T ss_dssp             EEEEEETTEEEEEECCSSS--STTCBCHHHHHHHHHHHHHHHHS-SCS-EEEEEECSSCSBCCBCHHHHHHHHH-HCHHH
T ss_pred             EEEEEECCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHcC-CCE-EEEEecCccccccccccchhhhccc-ccccc
Confidence            678999999999998 687  78999999999999999999987 568 8999999999999999999865322 23344


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...++.+.+++++..+.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        79 ~~~~~~~~~~~~~~~i~~~~kP~Iaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~g~~~~l~r~ig-  155 (258)
T d2fw2a1          79 ASLEMVDTIKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEK-AWFQTPYTTFGQ-SPDGCSSITFPKMMG-  155 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCEETHHHHTGGGSSEEEEETT-CEEECCHHHHTC-CCCTTHHHHHHHHHC-
T ss_pred             hhhHHHHHHHHHHHhhhccceeeeeecccccccccccccccccccceecc-cceeeccccccc-cccccccccchhhcC-
Confidence            45677888999999999999999999999999999999999999999988 899999999999 67665 789999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      .+.+++++++|++++|++|+++||||+|+++ +++.+++.++++++++.|  +.+++.+|+.+++.....++
T Consensus       156 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~i~~~~--~~a~~~~K~~~~~~~~~~l~  224 (258)
T d2fw2a1         156 KASANEMLIAGRKLTAREACAKGLVSQVFLT-GTFTQEVMIQIKELASYN--AIVLEECKALVRCNIKLELE  224 (258)
T ss_dssp             HHHHHHHHTTCCEEEHHHHHHTTSCSEEECS-TTHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhccCcccccccccccccccccccc-cccccccchhhhhhhhhh--HHHHHHHHHHHHHhhcCCHH
Confidence            9999999999999999999999999999998 899999999999999999  99999999999877655544

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=5.2e-49  Score=329.17  Aligned_cols=217  Identities=29%  Similarity=0.362  Sum_probs=197.1

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      ||.+++ |+|++||||+|+  +.|++|.+|+.+|.++++++++|++++ +||++|.|+.||+|.|++.+.....  .+..
T Consensus         1 ~v~ie~-G~va~Itlnrp~--~~Nal~~~~~~el~~~l~~~~~d~~v~-~vvl~g~g~~f~aG~dl~~~~~~~~--~~~~   74 (253)
T d1uiya_           1 MVQVEK-GHVAVVFLNDPE--RRNPLSPEMALSLLQALDDLEADPGVR-AVVLTGRGKAFSAGADLAFLERVTE--LGAE   74 (253)
T ss_dssp             CEEEEC-SSEEEEEECCGG--GTCCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSCSBCCCCHHHHHHHTT--SCHH
T ss_pred             CEEEee-CCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEecccccccccchhHHhhhccc--cCcc
Confidence            466664 779999999997  789999999999999999999999999 9999999999999999998765422  2245


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCH
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSA  160 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~  160 (243)
                      ....+...++.++..+.++|||+||+|||+|+|||++|+++||+||++++ ++|++||.++|+ +|.+++.++++++| .
T Consensus        75 ~~~~~~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~ria~~~-a~~~~~e~~~g~-~~~~~~~~l~~~~g-~  151 (253)
T d1uiya_          75 ENYRHSLSLMRLFHRVYTYPKPTVAAVNGPAVAGGAGLALACDLVVMDEE-ARLGYTEVKIGF-VAALVSVILVRAVG-E  151 (253)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECCHHHHTC-CCHHHHHHHHHHSC-H
T ss_pred             cccchhhhhhhhhhHHhcCCCCEEEEeCeEEehhhHHHHhhhhhhhhhhh-hHHhhhhccccc-ccccchhhhhcccC-H
Confidence            55666777889999999999999999999999999999999999999988 899999999999 78888899999999 9


Q ss_pred             HHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHH
Q 041046          161 TARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGV  229 (243)
Q Consensus       161 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~  229 (243)
                      .++++++++|++++|++|+++||||+|+++ +++.+.+.++++++++.|  +.++..+|+.+++.....
T Consensus       152 ~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~~~~~~--~~a~~~~K~~l~~~~~~~  217 (253)
T d1uiya_         152 KAAKDLLLTGRLVEAREAKALGLVNRIAPP-GKALEEAKALAEEVAKNA--PTSLRLTKELLLALPGMG  217 (253)
T ss_dssp             HHHHHHHHHCCEEEHHHHHHHTSCSEEECT-TCHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHhhcCcCCCHHHHHHhCCCcccccc-cccchhHHHHHHhhcccc--hHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999998 889999999999999999  999999999988765433

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=6.2e-49  Score=330.70  Aligned_cols=214  Identities=23%  Similarity=0.307  Sum_probs=195.2

Q ss_pred             ceeeE-eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            2 CTLEK-HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.+++ ++||++|+| +|+  +.|++|.+|+.+|.++++++++|++++ +||++|.|++||+|.|++++...   ..+.+
T Consensus        11 i~~~~~~~gV~~itl-rp~--~~Nal~~~m~~el~~~~~~~~~d~~vr-~vvl~g~g~~FsaG~Dl~~~~~~---~~~~~   83 (263)
T d1wz8a1          11 LAFAWPRPGVLEITF-RGE--KLNAMPPALHRGLARVWRDLEAVEGVR-AVLLRGEGGVFSAGGSFGLIEEM---RASHE   83 (263)
T ss_dssp             EEEEEEETTEEEEEE-CCS--GGGCBCHHHHHHHHHHHHHHTTCTTCS-EEEEEEGGGCCBCCBCHHHHHHH---HHCHH
T ss_pred             EEEEEcCCCEEEEEE-CCC--CCCCCCHHHHHHHHHHHHHHhhCCCCe-EEEEecccccccccchhhhhhhh---ccccc
Confidence            45676 678999999 676  899999999999999999999999999 99999999999999999988653   12245


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGS  159 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~  159 (243)
                      ...++.....+++..+.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~kPvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~~G-  160 (263)
T d1wz8a1          84 ALLRVFWEARDLVLGPLNFPRPVVAAVEKVAVGAGLALALAADIAVVGKG-TRLLDGHLRLGV-AAGDHAVLLWPLLVG-  160 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTS-CCTTTHHHHTHHHHC-
T ss_pred             ccccchhhhhHHHHHhhhhhcceeeecccccccccccccccccccccccc-cccccccccccc-ccccccccccccccc-
Confidence            56677788899999999999999999999999999999999999999988 899999999999 67666 689999999 


Q ss_pred             HHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          160 ATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       160 ~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ..++++++++|++++|+||+++||||+|+++ +++.+++.++|++|++.|  |.++..+|+.+++....
T Consensus       161 ~~~a~~l~l~g~~i~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~al~~~K~~l~~~~~~  226 (263)
T d1wz8a1         161 MAKAKYHLLLNEPLTGEEAERLGLVALAVED-EKVYEKALEVAERLAQGP--KEALHHTKHALNHWYRS  226 (263)
T ss_dssp             HHHHHHHHHHTCCEEHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHT
T ss_pred             cchhhhhcccccccchhHHHhcCCcccccch-hhhhHHHHHHHHHhhccH--HHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998 899999999999999999  99999999998776543

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.8e-48  Score=325.38  Aligned_cols=215  Identities=18%  Similarity=0.235  Sum_probs=194.1

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHH
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      |.++.++||++|+||+|   +.|++|.+++++|.++++.+++|++++ +||++|.| ++||+|+|++++...     +..
T Consensus         6 ve~~~~~gIa~itln~p---~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~~Fs~G~Dl~~~~~~-----~~~   76 (249)
T d1sg4a1           6 VEPDAGAGVAVMKFKNP---PVNSLSLEFLTELVISLEKLENDKSFR-GVILTSDRPGVFSAGLDLTEMCGR-----SPA   76 (249)
T ss_dssp             EEEETTTTEEEEEECCT---TTTEECHHHHHHHHHHHHHHHHCTTCC-EEEEEESSTEESCCEECGGGGSSC-----CHH
T ss_pred             EEEECCCCEEEEEECCC---CcCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEEeccceeEeccccccccccc-----ccc
Confidence            34455578999999999   679999999999999999999999999 99999988 479999999987542     245


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcce--eecccccCCCCchh-hHHHHHHHh
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVL--YMSEVDIGATLPDY-FTALFRAKV  157 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f--~~pe~~~Gl~~p~~-g~~~l~~~~  157 (243)
                      ....+...+++++.++.++|||+||+|||+|+|+|++++++||+||++++ ++|  ++||+++|+ +|++ +++++++++
T Consensus        77 ~~~~~~~~~~~~~~~l~~~~kpvIa~v~G~a~GgG~~lal~~D~~ia~~~-a~f~~~~pe~~~Gl-~p~~g~~~~l~~~i  154 (249)
T d1sg4a1          77 HYAGYWKAVQELWLRLYQSNLVLVSAINGACPAGGCLVALTCDYRILADN-PRYCIGLNETQLGI-IAPFWLKDTLENTI  154 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSSEEEEEECEEBCHHHHHHHTTSSEEEEECC-TTCCBSCCGGGGTC-CCCHHHHHHHHHHH
T ss_pred             cccccchhhHHHHHhhhcCccccchhhcccccccccccccccccceeecc-cccccccccccccc-cccccccccccccc
Confidence            56677888999999999999999999999999999999999999999988 554  789999999 5655 578999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                      | .+.+++++++|++++|++|+++||||+|+++ +++.+++.++++++++.|  +.+++.+|+.+++.....+.
T Consensus       155 G-~~~a~~lll~g~~~~a~~A~~~Glv~~v~~~-~~l~~~a~~~a~~l~~~~--~~a~~~~K~~~~~~~~~~l~  224 (249)
T d1sg4a1         155 G-HRAAERALQLGLLFPPAEALQVGIVDQVVPE-EQVQSTALSAIAQWMAIP--DHARQLTKAMMRKATASRLV  224 (249)
T ss_dssp             C-HHHHHHHHHHTCCBCHHHHHHHTSSSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred             c-cccccccccccccccHHHHHhhccccccCCh-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCHH
Confidence            9 9999999999999999999999999999997 899999999999999999  99999999999987766655

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.8e-49  Score=332.09  Aligned_cols=212  Identities=21%  Similarity=0.276  Sum_probs=190.2

Q ss_pred             CceeeEe---CCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccc
Q 041046            1 MCTLEKH---GDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAG   77 (243)
Q Consensus         1 ~i~~~~~---~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~   77 (243)
                      .|.++++   ++|++||||+|+  +.|++|.+|+.+|.++++++++|++++ +||++|.|++||+|.|++++....   .
T Consensus         5 ~i~~e~~g~~~~I~~itlnrP~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vvl~g~g~~F~aG~Dl~~~~~~~---~   78 (260)
T d1mj3a_           5 YIITEKKGKNSSVGLIQLNRPK--ALNALCNGLIEELNQALETFEEDPAVG-AIVLTGGEKAFAAGADIKEMQNRT---F   78 (260)
T ss_dssp             SEEEEEESGGGCEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECCSSEEECCBCHHHHTTCC---H
T ss_pred             EEEEEEEcCCCCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEecccccccccchhhhhhccc---h
Confidence            4678886   489999999997  789999999999999999999999999 999999999999999999886521   1


Q ss_pred             hHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHH
Q 041046           78 ARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAK  156 (243)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~  156 (243)
                       .   ..+...+.+++..+.++||||||+|||+|+|||++|+++||+||++++ ++|++||+++|+ +|++| +++++++
T Consensus        79 -~---~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~Gl-~p~~~~~~~l~~~  152 (260)
T d1mj3a_          79 -Q---DCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEK-AQFGQPEILLGT-IPGAGGTQRLTRA  152 (260)
T ss_dssp             -H---HHHHC--CCGGGGGGGCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECGGGGGTC-CCCSSTTTHHHHH
T ss_pred             -h---hhhHHHHHHHHHHhccCCCeEEEEEcCeEeHHHHHHHHHCCEEEEcCC-CEEECchhccCc-CCcccHHHHHHHH
Confidence             1   223445677888999999999999999999999999999999999988 899999999999 67665 6899999


Q ss_pred             hCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          157 VGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       157 ~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +| .+.+++++++|++++|+||+++|||++|+++ +++.+.+.++++++++.+  +.++..+|+.++.....
T Consensus       153 ig-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~-~~~~~~a~~~a~~i~~~~--~~a~~~~K~~l~~~~~~  220 (260)
T d1mj3a_         153 VG-KSLAMEMVLTGDRISAQDAKQAGLVSKIFPV-ETLVEEAIQCAEKIANNS--KIIVAMAKESVNAAFEM  220 (260)
T ss_dssp             HC-HHHHHHHHHHCCCEEHHHHHHHTSCSEEECT-TTHHHHHHHHHHHHHHSC--HHHHHHHHHHHHGGGSS
T ss_pred             hC-HHHHHHHHHcCcccCchhhccCCCceeeecc-cccccccccccccccchh--hHHHHHHHHHHHHHHhC
Confidence            99 9999999999999999999999999999998 889999999999999999  99999999998876443

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-48  Score=325.53  Aligned_cols=224  Identities=17%  Similarity=0.168  Sum_probs=191.0

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccc-----
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSR-----   75 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~-----   75 (243)
                      .|.++++|+|++|+||+|+  +.|++|.+++.+|.++++++++|++++ +||++|.|++||+|+|++++......     
T Consensus         6 ~i~~~~~~~v~~Itlnrp~--~~Na~~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~   82 (266)
T d1pjha_           6 KISYRIEGPFFIIHLINPD--NLNALEGEDYIYLGELLELADRNRDVY-FTIIQSSGRFFSSGADFKGIAKAQGDDTNKY   82 (266)
T ss_dssp             TEEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCCBCHHHHHC-------CC
T ss_pred             eEEEEEECCEEEEEEcCCC--cCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccchhHHHHHhccccccccc
Confidence            4789999999999999997  789999999999999999999999999 99999999999999999998653210     


Q ss_pred             -cchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHH
Q 041046           76 -AGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALF  153 (243)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l  153 (243)
                       .........+...+..++..+.++||||||+|||+|+|||++++++||+|||++++++|++||+++|+ +|++| ++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~l~~~~kP~IAav~G~a~GgG~~lal~~D~~ia~~~~~~~~~pe~~lGl-~p~~g~~~~l  161 (266)
T d1pjha_          83 PSETSKWVSNFVARNVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCDIVYSINDKVYLLYPFANLGL-ITEGGTTVSL  161 (266)
T ss_dssp             SSHHHHHHHHTHHHHHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSSEEEESSTTCEEECCHHHHTC-CCCTTHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHhcchhhhhhhhcccccccccchhccchhhhhhcccccccccccccc-cccccccccc
Confidence             11133456677778889999999999999999999999999999999999998776889999999999 67765 6899


Q ss_pred             HHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHH-H----HHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          154 RAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQV-A----EASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       154 ~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l-~----~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      ++++| .+.+++++++|+.++|+||+++||||+|+++.+.. .    +.+.++++.+...+  +.++..+|+.++....+
T Consensus       162 ~r~~g-~~~a~~llltg~~~~a~eA~~~Glv~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~s~~~~K~~l~~~~~~  238 (266)
T d1pjha_         162 PLKFG-TNTTYECLMFNKPFKYDIMCENGFISKNFNMPSSNAEAFNAKVLEELREKVKGLY--LPSCLGMKKLLKSNHID  238 (266)
T ss_dssp             HHHHC-HHHHHHHHHTTCCEEHHHHHHTTCCSEECCCCTTCHHHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHTTTHH
T ss_pred             ccccc-cchhhhhhccCCcCCHHHHHHCCCEeEeeCchhhhHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhhHH
Confidence            99999 99999999999999999999999999999752221 1    12345667777777  88999999998877666


Q ss_pred             Hhc
Q 041046          229 VLG  231 (243)
Q Consensus       229 ~~~  231 (243)
                      .++
T Consensus       239 ~~~  241 (266)
T d1pjha_         239 AFN  241 (266)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=100.00  E-value=1.6e-47  Score=319.51  Aligned_cols=216  Identities=19%  Similarity=0.264  Sum_probs=197.5

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHH
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARE   80 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~   80 (243)
                      .|.++++|+|++|+||+|+  +.|++|.+++.+|.++++++++|++++ +||++|.|++||+|.|++++..     .+.+
T Consensus        14 ~i~~~~~~~v~~itln~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vvl~g~g~~FsaG~Dl~~~~~-----~~~~   85 (249)
T d1szoa_          14 NIRLERDGGVLLVTVHTEG--KSLVWTSTAHDELAYCFHDIACDRENK-VVILTGTGPSFCNEIDFTSFNL-----GTPH   85 (249)
T ss_dssp             TEEEEEETTEEEEEECBTT--BSCEECHHHHHHHHHHHHHHHHCTTCC-EEEEECBTTBSBCEECGGGSCC-----SSHH
T ss_pred             eEEEEEECCEEEEEECCCC--ccCCCCHHHHHHHHHHHHHHHhCCCcc-eEeeecccccccccchhhhhhc-----cccc
Confidence            3789999999999999997  789999999999999999999999999 9999999999999999998753     2245


Q ss_pred             HHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcce-eecccccCCCCchhh-HHHHHHHhC
Q 041046           81 RLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVL-YMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        81 ~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f-~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      ...++...++++++++.++|||||++++|+|.| |++++++||+||++++ ++| .+||.++|+ +|++| ++++++++|
T Consensus        86 ~~~~~~~~~~~l~~~i~~~~~pvIa~v~g~~~G-G~~l~l~~D~ria~~~-a~f~~~pe~~~g~-~p~~g~~~~l~r~ig  162 (249)
T d1szoa_          86 DWDEIIFEGQRLLNNLLSIEVPVIAAVNGPVTN-APEIPVMSDIVLAAES-ATFQDGPHFPSGI-VPGDGAHVVWPHVLG  162 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCSCEEEEECSCBCS-STHHHHTSSEEEEETT-CEEECTTSGGGTC-CCTTTHHHHHHHHHC
T ss_pred             chhhhhhhhhhhhhhcccCcccceeeecccccc-ccccccccccccccCC-cEEEEeecccccc-ccccccccccccccC
Confidence            566777788999999999999999999998865 6789999999999998 666 579999999 78776 689999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHhc
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVLG  231 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~~  231 (243)
                       ..++++++++|++++|+||+++||||+|+++ +++.+++.++|+++++.|  +.+++.+|+.+++.+...++
T Consensus       163 -~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~~~~e  231 (249)
T d1szoa_         163 -SNRGRYFLLTGQELDARTALDYGAVNEVLSE-QELLPRAWELARGIAEKP--LLARRYARKVLTRQLRRVME  231 (249)
T ss_dssp             -HHHHHHHHHTTCEEEHHHHHHHTSCSEEECH-HHHHHHHHHHHHHHHTSC--HHHHHHHHHHHSHHHHHHHH
T ss_pred             -ccceeeecccCCCCCHHHHHHhCCcCcccCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHhccHH
Confidence             9999999999999999999999999999998 899999999999999999  99999999999988777665

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.2e-47  Score=322.55  Aligned_cols=211  Identities=17%  Similarity=0.298  Sum_probs=186.3

Q ss_pred             CceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC--CCccccCCChhhHHhcccccch
Q 041046            1 MCTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH--GKFFSNGLDLAWAQAAGSRAGA   78 (243)
Q Consensus         1 ~i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~--g~~F~~G~dl~~~~~~~~~~~~   78 (243)
                      +|.++++|+|++|+||+|+  +.|++|.+|+.+|.+++++++ +++++ +||++|.  |++||+|+|++++.....    
T Consensus         5 ~i~~~~~~~v~~Itlnrp~--~~Nal~~~~~~~l~~al~~~~-~~~~~-~vVl~g~~g~~~F~aG~Dl~~~~~~~~----   76 (261)
T d1ef8a_           5 YVNVVTINKVAVIEFNYGR--KLNALSKVFIDDLMQALSDLN-RPEIR-CIILRAPSGSKVFSAGHDIHELPSGGR----   76 (261)
T ss_dssp             SEEEEEETTEEEEEECCGG--GTTCCCHHHHHHHHHHHHHTC-STTCC-EEEEECCTTCSEEECCSCSTTC---------
T ss_pred             EEEEEEECCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHh-CCCCE-EEEEeccccchhhcccccccccccCCc----
Confidence            4789999999999999997  889999999999999999997 45788 8888875  579999999998765311    


Q ss_pred             HHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHh
Q 041046           79 RERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKV  157 (243)
Q Consensus        79 ~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~  157 (243)
                        ....+.+.+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||.++|+ +|++| ++++++.+
T Consensus        77 --~~~~~~~~~~~~~~~i~~~~kPvIAav~G~a~GgG~~lal~cD~ria~~~-a~~~~pe~~~Gl-~~~~~~~~~l~r~~  152 (261)
T d1ef8a_          77 --DPLSYDDPLRQITRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAAST-STFSMTPVNLGV-PYNLVGIHNLTRDA  152 (261)
T ss_dssp             --CTTCTTSHHHHHHHHHHHCSSCEEEEECSEEETHHHHHHHHSSEEEEETT-CEEECCHHHHTC-CCCHHHHHTTSSSS
T ss_pred             --cccccccchhhhHHHHHhCchhhhhcccccccchhhhhhhhhhhhhhhHh-HHHhhhhccccc-cccccccccccccc
Confidence              11123445778999999999999999999999999999999999999988 899999999999 56665 67999999


Q ss_pred             CCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHH
Q 041046          158 GSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLC  227 (243)
Q Consensus       158 g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~  227 (243)
                      | ..++++++++|+.++|+||+++||||+|+++ +++.+++.++++++++.|  |.++..+|+.++....
T Consensus       153 g-~~~a~~~~l~g~~~~a~eA~~~Glv~~vv~~-~~~~~~a~~~a~~la~~~--~~a~~~~K~~l~~~~~  218 (261)
T d1ef8a_         153 G-FHIVKELIFTASPITAQRALAVGILNHVVEV-EELEDFTLQMAHHISEKA--PLAIAVIKEELRVLGE  218 (261)
T ss_dssp             C-HHHHHHHHHHCCCEEHHHHHHTTSCSEEECH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred             C-ccccccccccCceEcHHHHHHcCCcceeeec-hhhhhhhHHHHHHHHhcC--cHHHHHHHHHHHHHHh
Confidence            9 9999999999999999999999999999998 889999999999999998  9999999998876543

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.5e-46  Score=314.42  Aligned_cols=221  Identities=17%  Similarity=0.278  Sum_probs=192.2

Q ss_pred             ee-eEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhccccc-----
Q 041046            3 TL-EKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRA-----   76 (243)
Q Consensus         3 ~~-~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~-----   76 (243)
                      .+ +.+++|++||||||+  +.|++|.+|+.+|.++++.+++|++++ +||++|.|+.||+|.|+.++......+     
T Consensus         6 ~~~~~~~~I~~itlnrP~--~~Nals~~m~~el~~~l~~~~~d~~v~-~vvltg~~~~F~aG~dl~~~~~~~~~~~~~~~   82 (275)
T d1dcia_           6 QVTSAQKHVLHVQLNRPE--KRNAMNRAFWRELVECFQKISKDSDCR-AVVVSGAGKMFTSGIDLMDMASDILQPPGDDV   82 (275)
T ss_dssp             EEEEEETTEEEEEECCGG--GTTCBCHHHHHHHHHHHHHHHTCTTCC-EEEEEESTTCSBCCBCHHHHHHHHTSCCCSSH
T ss_pred             EEEEccCCEEEEEEcCCC--CCCCCCHHHHHHHHHHHHHHHhCCCce-EEEEeccccccccCccHHHhhhcccccccccc
Confidence            44 347899999999997  889999999999999999999999999 999999999999999999876532100     


Q ss_pred             -chHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHH
Q 041046           77 -GARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFR  154 (243)
Q Consensus        77 -~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~  154 (243)
                       .......++...+++++..+.++|||+||+|||+|+|||++|+++|||||++++ ++|++||+++|+ +|++| +.+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GgG~~lal~~D~ria~~~-a~f~~pe~~~Gl-~p~~~~~~~~~  160 (275)
T d1dcia_          83 ARIAWYLRDLISRYQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACDIRYCTQD-AFFQVKEVDVGL-AADVGTLQRLP  160 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSSEEEEETT-CEEECCGGGGTS-CCCSSHHHHGG
T ss_pred             cchhhhhccchhhhHHHHHHHHhcCCCEEEEEeeEeehhhHHHHhhcCchhhccC-ccccchhccccc-ccccccccccc
Confidence             112234566677888999999999999999999999999999999999999988 899999999999 56665 67899


Q ss_pred             HHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHHHh
Q 041046          155 AKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCGVL  230 (243)
Q Consensus       155 ~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~~~  230 (243)
                      +++|....+++++++|+.++|+||+++||||+|+++.+.+.+++.++++++++.+  |.++..+|+.+++.....+
T Consensus       161 ~~~g~~~~~~~ll~~g~~~~a~eA~~~Glv~~v~~~~~~l~~~~~~~a~~i~~~~--p~a~~~~K~~l~~~~~~~l  234 (275)
T d1dcia_         161 KVIGNRSLVNELTFTARKMMADEALDSGLVSRVFPDKDVMLNAAFALAADISSKS--PVAVQGSKINLIYSRDHSV  234 (275)
T ss_dssp             GTCSCHHHHHHHHHHCCEEEHHHHHHHTSSSEEESSHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHSCH
T ss_pred             cccccccccccccccccccchhhhccCCCceeeeehhhhhhhccccccccccccc--HHHHHHHHHHHHHHhcCCH
Confidence            9998566677999999999999999999999999985667889999999999998  9999999999877654443

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=100.00  E-value=8.2e-46  Score=318.26  Aligned_cols=200  Identities=21%  Similarity=0.325  Sum_probs=179.2

Q ss_pred             ceeeE-eCCEEEEEEc-CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchH
Q 041046            2 CTLEK-HGDVFVLTLT-GSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGAR   79 (243)
Q Consensus         2 i~~~~-~~~v~~i~ln-~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~   79 (243)
                      |.+++ ++||++|+|| +|+  +.|++|.+++.+|.++++.++.|++++ +||++|.|+.||+|+|++++..... .. .
T Consensus         8 i~~~~~~~gva~i~ln~~p~--~~Nal~~~~~~el~~al~~~~~d~~v~-~vVl~g~g~~F~aG~Dl~~~~~~~~-~~-~   82 (310)
T d1wdka4           8 ITVTALESGIVELKFDLKGE--SVNKFNRLTLNELRQAVDAIKADASVK-GVIVSSGKDVFIVGADITEFVENFK-LP-D   82 (310)
T ss_dssp             EEEEECGGGEEEEEECCTTS--SSCBCCHHHHHHHHHHHHHHHHCTTCC-EEEEEESSSSSBBCCCHHHHHHHTT-SC-H
T ss_pred             EEEEEecCCEEEEEECCCCc--ccCCCCHHHHHHHHHHHHHHHhCCCce-EEEEECCCCCccchhhhhhhhhccc-cc-c
Confidence            34554 7889999998 786  789999999999999999999999999 9999999999999999999876433 22 2


Q ss_pred             HHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhC
Q 041046           80 ERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVG  158 (243)
Q Consensus        80 ~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g  158 (243)
                      .........+++++.++.++||||||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| +++|++++|
T Consensus        83 ~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~GgG~elal~cD~ria~~~-a~f~~pe~~~Gl-~P~~gg~~~L~r~iG  160 (310)
T d1wdka4          83 AELIAGNLEANKIFSDFEDLNVPTVAAINGIALGGGLEMCLAADFRVMADS-AKIGLPEVKLGI-YPGFGGTVRLPRLIG  160 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCEEEEECSCEETHHHHHHHTSSEEEEETT-CEEECGGGGGTC-CCCSSHHHHHHHHHC
T ss_pred             hhhhhhhhHHHHHHHHhhcCCccceeeccccccccccccchhhhhhhcccc-ceecccccccCC-Cccccchhhhhhhhh
Confidence            233344445789999999999999999999999999999999999999988 899999999999 77765 789999999


Q ss_pred             CHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCC
Q 041046          159 SATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKW  210 (243)
Q Consensus       159 ~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~  210 (243)
                       ...+++++++|+.++|+||+++||||+|+++ +++.+.+.++|++++..++
T Consensus       161 -~~~a~~lll~g~~~~a~eA~~~Glv~~vv~~-~~l~~~a~~~a~~~~~~~~  210 (310)
T d1wdka4         161 -VDNAVEWIASGKENRAEDALKVSAVDAVVTA-DKLGAAALDLIKRAISGEL  210 (310)
T ss_dssp             -HHHHHHHHHHCCCEEHHHHHHTTSSSEEECG-GGHHHHHHHHHHHHHTTSS
T ss_pred             -hhhhhhhhccccccCHHHHhhccCccEEccH-HHHHHHHHHHHHHHHhccc
Confidence             9999999999999999999999999999998 8999999999999998763

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-46  Score=314.51  Aligned_cols=208  Identities=19%  Similarity=0.322  Sum_probs=187.2

Q ss_pred             eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCC-CccccCCChhhHHhcccccchHHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHG-KFFSNGLDLAWAQAAGSRAGARERLLYM   85 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g-~~F~~G~dl~~~~~~~~~~~~~~~~~~~   85 (243)
                      ++||++|+||+|+  +.|++|.+|+.+|.++++.+++|++++ +||++|.| ++||+|.|++.+...    . ......+
T Consensus        13 ~~gI~~itlnrp~--~~Nal~~~~~~~l~~~l~~~~~d~~v~-~vVl~g~g~~~f~~g~d~~~~~~~----~-~~~~~~~   84 (266)
T d1hzda_          13 NRGIVVLGINRAY--GKNSLSKNLIKMLSKAVDALKSDKKVR-TIIIRSEVPGIFCAGADLKERAKM----S-SSEVGPF   84 (266)
T ss_dssp             GTTEEEEEECCGG--GTTCBCTTHHHHHHHHHHHHHHCSSCS-EEEEEESBTEEEECCBCHHHHTTS----C-HHHHHHH
T ss_pred             cCCEEEEEeCCCC--CCCCCCHHHHHHHHHHHHHHHhCCCcc-eEEEeccccccccccccccccccc----c-chhhhhh
Confidence            3679999999997  789999999999999999999999999 99999987 689999999988752    1 3445567


Q ss_pred             HHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhh-HHHHHHHhCCHHHHH
Q 041046           86 VESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRAKVGSATARR  164 (243)
Q Consensus        86 ~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~~~g~~~~a~  164 (243)
                      ...+.+++..+.++|||+||+|||+|+|||++++++||+||++++ ++|++||+++|+ +|++| ++++++++| .++++
T Consensus        85 ~~~~~~~~~~i~~~~kpvIaav~G~a~GgG~~lal~~D~~ia~~~-a~f~~pe~~~G~-~p~~g~~~~l~~~ig-~~~a~  161 (266)
T d1hzda_          85 VSKIRAVINDIANLPVPTIAAIDGLALGGGLELALACDIRVAASS-AKMGLVETKLAI-IPGGGGTQRLPRAIG-MSLAK  161 (266)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESEEEETHHHHHHHHSSEEEEETT-CEEECCGGGGTC-CCCSSHHHHHHHHHC-HHHHH
T ss_pred             hhHHHHHHHHHhcCCcccccccccccccccceeccccceeeecCC-cEEeecccceee-cCCccceeeehhhhH-HHHHH
Confidence            788899999999999999999999999999999999999999998 899999999999 67665 789999999 99999


Q ss_pred             HHHhccCCCCHHHHHHcCchhhhcCChHH----HHHHHHHHHHHHhcCCCChhHHHHHHHHhhhHHHH
Q 041046          165 DVLLRAKKIKGEEALRMGLVQAAYDSEEQ----VAEASMRLAKQMAGRKWAGEVYAEIRKSLYPDLCG  228 (243)
Q Consensus       165 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~~----l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~~~~  228 (243)
                      +++++|+.++|++|+++||||+|+++ ++    +.+.+.++++++++.|  |.++..+|+.+++....
T Consensus       162 ~l~ltg~~~~a~eA~~~Glv~~vv~~-~~l~~~~~~~a~~~a~~i~~~~--p~a~~~~K~~l~~~~~~  226 (266)
T d1hzda_         162 ELIFSARVLDGKEAKAVGLISHVLEQ-NQEGDAAYRKALDLAREFLPQG--PVAMRVAKLAINQGMEV  226 (266)
T ss_dssp             HHHHHTCEEEHHHHHHHTSCSEEECC-CTTSCHHHHHHHHHHHTTTTSC--HHHHHHHHHHHHHHHTS
T ss_pred             hhhccCCccCHHHhhcccccccccCh-hhhhhHHHHHHHHHHHhcccCC--hHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999997 44    5667777788888898  99999999999876543

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=3.5e-45  Score=312.78  Aligned_cols=216  Identities=17%  Similarity=0.261  Sum_probs=177.9

Q ss_pred             ceeeE--eCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecC-------CCccccCCChhhHHhc
Q 041046            2 CTLEK--HGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSH-------GKFFSNGLDLAWAQAA   72 (243)
Q Consensus         2 i~~~~--~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~-------g~~F~~G~dl~~~~~~   72 (243)
                      |.+++  +++|++||||||+  +.|++|.+|+.+|.++++++++|++++ +|||+|.       |+.||+|.|++.....
T Consensus        20 i~~~~~~~~gi~~ItlnRP~--~~NAl~~~m~~eL~~~l~~~~~d~~vr-~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~   96 (297)
T d1q52a_          20 ITYHRHVDDATVRVAFNRPE--VRNAFRPHTVDELYRVLDHARMSPDVG-VVLLTGNGPSPKDGGWAFCSGGDQRIRGRS   96 (297)
T ss_dssp             EEEEEESSSSEEEEEECCGG--GTTCCCHHHHHHHHHHHHHHHHCTTCC-EEEEEECCCCTTTCCCEEECCC--------
T ss_pred             eEEEEEccCCEEEEEECCCC--cCCCCCHHHHHHHHHHHHHHHhCCCcc-EEEEecCCCcccchhhhhhhcchhhhhccc
Confidence            55665  5899999999997  889999999999999999999999999 9999997       4567777888755432


Q ss_pred             cc------ccchHHHHHHHHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCc
Q 041046           73 GS------RAGARERLLYMVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLP  146 (243)
Q Consensus        73 ~~------~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p  146 (243)
                      ..      .....+........+..++..|.++||||||+|||+|+|||++++++||+||+++++++|++||+++|+ +|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~GGG~~lal~~D~~ia~~~~~~f~~pe~~~Gl-~p  175 (297)
T d1q52a_          97 GYQYASGDTADTVDVARAGRLHILEVQRLIRFMPKVVICLVNGWAAGGGHSLHVVCDLTLASREYARFKQTDADVGS-FD  175 (297)
T ss_dssp             ---------------------CHHHHHHHHHHSSSEEEEEECSEEETHHHHHHHHSSEEEEETTTCEEECCGGGGTC-CC
T ss_pred             ccccccccccchhhhHHHHHHHHHHHHHHHHhcCCeEEEEEcceeeeccchhhhhhhccccccccccceeeeecccc-cc
Confidence            10      001112233444557789999999999999999999999999999999999998875689999999999 66


Q ss_pred             hh-hHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhH
Q 041046          147 DY-FTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRKWAGEVYAEIRKSLYPD  225 (243)
Q Consensus       147 ~~-g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~~~~~~~~~~K~~l~~~  225 (243)
                      ++ |+.+|++++| .+++++++++|+.++|+||+++||||+|+++ +++.+++.++++++++.|  +.+++.+|+.++..
T Consensus       176 ~~~~~~~L~r~iG-~~~a~~llltg~~~~a~eA~~~Glv~~vv~~-~el~~~~~~~a~~l~~~~--~~a~~~~K~~~~~~  251 (297)
T d1q52a_         176 GGYGSAYLARQVG-QKFAREIFFLGRTYTAEQMHQMGAVNAVAEH-AELETVGLQWAAEINAKS--PQAQRMLKFAFNLL  251 (297)
T ss_dssp             CSTTTHHHHHHHC-HHHHHHHHHHCCEECHHHHHHHTSCSEEECG-GGHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHT
T ss_pred             ccccccccccccC-ccceeeccccccccchHhhhhhccccccCch-HHhhHHHHHHhhhhccCC--HHHHHHHHHHHHHh
Confidence            55 5799999999 9999999999999999999999999999998 899999999999999999  99999999887653

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=4.6e-07  Score=69.82  Aligned_cols=144  Identities=17%  Similarity=0.106  Sum_probs=94.5

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .|.|+.|       ++.++..++...+..++.++..+ ..+.+.+.      |.|+..                    ..
T Consensus        18 iI~l~g~-------I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~------GG~v~~--------------------g~   64 (183)
T d1yg6a1          18 VIFLTGQ-------VEDHMANLIVAQMLFLEAENPEKDIYLYINSP------GGVITA--------------------GM   64 (183)
T ss_dssp             EEEEESS-------BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEEC------CBCHHH--------------------HH
T ss_pred             EEEECCE-------ECHHHHHHHHHHHHHhhhhccCCceEEEEeCC------CccHHH--------------------HH
Confidence            3556666       88999999999888887543222 24555544      444432                    34


Q ss_pred             HHHHHHhcCCCcEEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-HH---------------H
Q 041046           91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-TA---------------L  152 (243)
Q Consensus        91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~---------------~  152 (243)
                      .++..|..++.|+...+.|.|.+.|.-+++++|  .|++.++ +.|-+-+...|. ..... ..               .
T Consensus        65 ~i~d~i~~~~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~n-s~~miH~~~~~~-~G~~~~i~~~~~~~~~~~~~~~~~  142 (183)
T d1yg6a1          65 SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPN-SRVMIHQPLGGY-QGQATDIEIHAREILKVKGRMNEL  142 (183)
T ss_dssp             HHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCEEEE-EEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCC-ceEEeccccccc-ccCHHHHHHHHHHHHHHHHHHHHH
Confidence            466677789999999999999999999999998  7999998 666555555443 11111 10               1


Q ss_pred             HHHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          153 FRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +.++.|. .....+++-.-+-++|+||+++||+|+|+.+
T Consensus       143 ~~~~tg~~~e~i~~~~~~d~~lta~EAl~~GliD~Ii~~  181 (183)
T d1yg6a1         143 MALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTH  181 (183)
T ss_dssp             HHHHHCCCHHHHHHHTSSCEEEEHHHHHHHTSSSEECCC
T ss_pred             HHHHHCcCHHHHHHHhccCccccHHHHHHcCCCcEEecc
Confidence            1112221 2233344333344899999999999999975

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.44  E-value=1.5e-06  Score=66.58  Aligned_cols=144  Identities=16%  Similarity=0.074  Sum_probs=91.2

Q ss_pred             EEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHH
Q 041046           12 VLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFR   90 (243)
Q Consensus        12 ~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~   90 (243)
                      .|.|..|       ++.++..++...|..++.++..+ ..+.+.+      .|.|+..                    ..
T Consensus        15 ii~l~g~-------I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS------~GG~v~~--------------------gl   61 (179)
T d2cbya1          15 IIFLGSE-------VNDEIANRLCAQILLLAAEDASKDISLYINS------PGGSISA--------------------GM   61 (179)
T ss_dssp             EEEECSC-------BCHHHHHHHHHHHHHHHHHCSSSCEEEEEEE------CCBCHHH--------------------HH
T ss_pred             EEEECCE-------ECHHHHHHHHHHHHHHhccCCCCeEEEEeeC------CCCCHHH--------------------HH
Confidence            3556666       88999999988876665432212 1355554      3444433                    23


Q ss_pred             HHHHHHhcCCCcEEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-H----HH-----------
Q 041046           91 PVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-T----AL-----------  152 (243)
Q Consensus        91 ~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~~-----------  152 (243)
                      .++..+..++.|+...+.|.|.+.|.-+++++|  .|++.++ ++|-+-+...|. ..... .    ..           
T Consensus        62 ~i~d~i~~~~~~v~t~~~G~aaS~a~~il~ag~k~~R~~~~~-s~~miH~~~~~~-~G~~~~i~~~~~~l~~~~~~i~~i  139 (179)
T d2cbya1          62 AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPH-ARILMHQPLGGV-TGSAADIAIQAEQFAVIKKEMFRL  139 (179)
T ss_dssp             HHHHHHHHCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEECCCC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccceeeehhhhhhhHHHHHHHcCCCCceEECCc-hHhhcCCCchhc-CCccHHHHHHHHHHHHHHHHHHHH
Confidence            455566778999999999999999999999999  8999998 666555554443 11110 0    01           


Q ss_pred             HHHHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          153 FRAKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       153 l~~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      +.++.|. .....+.+-.-.-++|+||+++||||+|+.+
T Consensus       140 ~a~~tg~~~~~i~~~~~~d~~l~a~EA~~~GliDeIi~~  178 (179)
T d2cbya1         140 NAEFTGQPIERIEADSDRDRWFTAAEALEYGFVDHIITR  178 (179)
T ss_dssp             HHHHHCCCHHHHHHHHHTTCEEEHHHHHHHTSCSEECSC
T ss_pred             HHHHhCCCHHHHHHhhcCCceecHHHHHHcCCCcEEecC
Confidence            1112221 2233444555566999999999999999865

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=7.2e-06  Score=63.32  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=93.7

Q ss_pred             EEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHH
Q 041046           13 LTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPV   92 (243)
Q Consensus        13 i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (243)
                      |.|+.|       +|.++..++...+..+++.+.-..-+.+.+.      |.|+..                    ...+
T Consensus        21 i~l~g~-------Id~~~~~~~i~~l~~l~~~~~~~I~l~INS~------GG~v~~--------------------g~ai   67 (190)
T d2f6ia1          21 IYLTDE-------INKKTADELISQLLYLDNINHNDIKIYINSP------GGSINE--------------------GLAI   67 (190)
T ss_dssp             EEECSC-------BCHHHHHHHHHHHHHHHHHCCSCEEEEEEEC------CBCHHH--------------------HHHH
T ss_pred             EEECCe-------eCHHHHHHHHHHHHHHhccCCCCeEEEEeCc------hhhhhH--------------------HHHH
Confidence            456666       8999999999998888753221113555443      444432                    2345


Q ss_pred             HHHHhcCCCcEEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-H----H-----------HHH
Q 041046           93 VAAMMDLPMPTVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-T----A-----------LFR  154 (243)
Q Consensus        93 ~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~----~-----------~l~  154 (243)
                      +..+..++.|+...+.|.|.+.|..+++++|  .|++.++ ++|-+.....|. ..... .    .           .+.
T Consensus        68 ~d~i~~~~~~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pn-s~imiH~~s~~~-~G~~~di~~~~~~l~~~~~~~~~i~a  145 (190)
T d2f6ia1          68 LDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPN-CRIMIHQPLGNA-FGHPQDIEIQTKEILYLKKLLYHYLS  145 (190)
T ss_dssp             HHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTT-CEEESSCTTCSC-C--------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCceEEEEeccccchhHHHHHhCCCCccccCCC-cEEEEccccccc-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566778999999999999999999999988  6999988 777766666554 21111 0    0           122


Q ss_pred             HHhCC-HHHHHHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          155 AKVGS-ATARRDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       155 ~~~g~-~~~a~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ++-|. .....+.+-.-.-++|+||+++||||+|+++
T Consensus       146 ~~tg~~~~~i~~~~~~d~~l~a~EAl~~GliD~Ii~~  182 (190)
T d2f6ia1         146 SFTNQTVETIEKDSDRDYYMNALEAKQYGIIDEVIET  182 (190)
T ss_dssp             HHHCCCHHHHHHHHHTTCEECHHHHHHHTSCSEECCC
T ss_pred             HHcCCCHHHHHHhccCCeeecHHHHHHcCCCcEEccc
Confidence            22231 1222333333455999999999999999975

>d1xnya1 c.14.1.4 (A:10-267) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.33  E-value=1.3e-05  Score=64.74  Aligned_cols=153  Identities=16%  Similarity=0.141  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhH
Q 041046           10 VFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESF   89 (243)
Q Consensus        10 v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~   89 (243)
                      |..+..|..-  ..-+++....+.+..+++.+.++.-+  +|.+...|     |..+.+-..         ....+.. +
T Consensus        90 v~v~a~Dftv--~gGS~g~~~~~K~~r~~e~A~~~~lP--lI~l~dsg-----Garm~e~~~---------~~~~~~~-~  150 (258)
T d1xnya1          90 VAVFSQDFTV--FGGALGEVYGQKIVKVMDFALKTGCP--VVGINDSG-----GARIQEGVA---------SLGAYGE-I  150 (258)
T ss_dssp             EEEEEECTTS--GGGCBCHHHHHHHHHHHHHHHHHTCC--EEEEECCC-----SBCGGGTHH---------HHHHHHH-H
T ss_pred             EEEEechhhh--hcCccchhhHHHHHHHHHHHHHcCCc--eEEEecCC-----CcccCcccc---------cccchhH-H
Confidence            4444444332  44689999999999999999987654  55555433     344433211         0111111 1


Q ss_pred             HHHHHHHhcCCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhc
Q 041046           90 RPVVAAMMDLPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLR  169 (243)
Q Consensus        90 ~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~  169 (243)
                      ...... .....|+|+++.|+|.||+......||++++.++.+.++       +.-|              ....  ..+
T Consensus       151 ~~~~~~-~s~~vP~I~vv~G~~~gG~a~~~~~~~~vim~~~~a~i~-------~aGP--------------~vv~--~~~  206 (258)
T d1xnya1         151 FRRNTH-ASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMF-------ITGP--------------DVIK--TVT  206 (258)
T ss_dssp             HHHHHH-TTTTSCEEEEECSEEEGGGGHHHHHSSEEEEETTTCEEE-------SSCH--------------HHHH--HHH
T ss_pred             HHHHHH-HcCCCCEEEEEcCCcChhHHHHHHhccchhhcccceEEE-------ecCH--------------HHHH--HHh
Confidence            122222 234699999999999999999999999999887655443       3112              1111  125


Q ss_pred             cCCCCHHHH-------HHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          170 AKKIKGEEA-------LRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       170 g~~~~a~eA-------~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                      |+.++.+++       ..-|++|.++++.++..+.+.++...|
T Consensus       207 ge~i~~eelgga~~h~~~sG~~d~v~~de~ea~~~~r~~Ls~l  249 (258)
T d1xnya1         207 GEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYL  249 (258)
T ss_dssp             CCCCCHHHHHBHHHHHHTSSCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             cCccChHHhccHHHHHhcCCeeEEEeCCHHHHHHHHHHHHHhc
Confidence            777887774       457999999998666666666655544

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.30  E-value=4.7e-06  Score=64.49  Aligned_cols=137  Identities=15%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             CCHHHHHHHHHHHHHHHhCCCCC-eEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           26 FGPSAIDSILSAIAKAKAEATPG-SALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d~~i~-~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      ++.++...+...+..++.++.-+ ..+.+.+.|      .|+..                    ...++..+..++.|+.
T Consensus        33 I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G------G~v~~--------------------glai~d~i~~~~~~v~   86 (192)
T d1y7oa1          33 VEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG------GSVSA--------------------GLAIVDTMNFIKADVQ   86 (192)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC------BCHHH--------------------HHHHHHHHHHSSSCEE
T ss_pred             EchHHHHHHHHHHHHhhhhcccCceeeeecCCC------CCHHH--------------------HHHHHHHHHhcCcceE
Confidence            88999999998888776432211 245555544      33332                    2445567778899999


Q ss_pred             EEECcccchhHHHHHHh--ccEEEEecCCcceeecccccCCCCchhh-H------HH-----------HHHHhCC-HHHH
Q 041046          105 AAVNGHAAAAGFTLALS--HDYVIMRRDKGVLYMSEVDIGATLPDYF-T------AL-----------FRAKVGS-ATAR  163 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~--~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~------~~-----------l~~~~g~-~~~a  163 (243)
                      ..+.|.|.+.|.-++++  +|.|++.++ +.+-+-....|. ..... .      ..           +.+..|. ....
T Consensus        87 t~~~G~aaS~as~il~aG~~g~R~~~pn-s~~miHq~~~~~-~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg~~~~~i  164 (192)
T d1y7oa1          87 TIVMGMAASMGTVIASSGAKGKRFMLPN-AEYMIHQPMGGT-GGGTQQTDMAIAPEHLLKTRNTLEKILAENSGQSMEKV  164 (192)
T ss_dssp             EEEEEEEETHHHHHHTTSCTTCEEECTT-CEEECCCCC---------------CHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred             EEeccccCCccceeeeecCCCccccchH-HHHHhhcccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            99999999999888775  679999998 666666655554 21110 0      01           1111221 2334


Q ss_pred             HHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          164 RDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      .+.+-.-.-++|+||+++||||+|+.+
T Consensus       165 ~~~~~rd~~lsa~EAleyGliD~Ii~~  191 (192)
T d1y7oa1         165 HADAERDNWMSAQETLEYGFIDEIMAN  191 (192)
T ss_dssp             HHHHHSCCCBCHHHHHHHTSCSEECCC
T ss_pred             HHhhcCCceecHHHHHHcCCCcEEecC
Confidence            455555566999999999999999865

>d2a7sa1 c.14.1.4 (A:20-277) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.26  E-value=2.3e-05  Score=63.26  Aligned_cols=143  Identities=16%  Similarity=0.129  Sum_probs=90.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      ..-+++....+.+..+.+.+.++.-+- |.++.+      +|..+.+-...      .....+.   +.. . .......
T Consensus       101 ~gGS~g~~~g~K~~ra~e~A~~~~lP~-I~l~ds------gGar~~eg~~~------~~~~~~~---~~~-~-~~~~~~v  162 (258)
T d2a7sa1         101 FGGSLGEVYGEKIVKVQELAIKTGRPL-IGINDG------AGARIQEGVVS------LGLYSRI---FRN-N-ILASGVI  162 (258)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHHTCCE-EEEECC------CSBCGGGCTHH------HHHHHHH---HHH-H-HHHTTTS
T ss_pred             eCCccchhhhhHHHHHHHHHHhcCCce-EEEecc------CCccccccccc------ccchhhH---HHH-H-HHHcCCC
Confidence            345899999999999999999876553 444433      33444321110      1111111   122 1 2234579


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH---
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA---  178 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA---  178 (243)
                      |+|+++.|+|.||+......||++|+.++.+.+       ++.-              +...+  ..+|+.+++++.   
T Consensus       163 P~I~~v~G~~~gG~a~~~~~~d~~vm~~~~a~i-------~~aG--------------P~vV~--~~~ge~~~~eeLGga  219 (258)
T d2a7sa1         163 PQISLIMGAAAGGHVYSPALTDFVIMVDQTSQM-------FITG--------------PDVIK--TVTGEEVTMEELGGA  219 (258)
T ss_dssp             CEEEEECSCCBSGGGHHHHHSSEEEEEBTTBBC-------BSSC--------------HHHHH--HHHCCCCCHHHHHBH
T ss_pred             CEEEEEecCcccHHHHHHHhccceEeecCceEE-------EccC--------------hhHHH--HhcCCccChhhccCH
Confidence            999999999999999999999999998774543       3311              22211  125777877653   


Q ss_pred             ----HHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          179 ----LRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       179 ----~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                          .+.|.+|.++++.++..+.+.++...|
T Consensus       220 ~~h~~~sG~~D~v~~de~~a~~~~r~~Ls~l  250 (258)
T d2a7sa1         220 HTHMAKSGTAHYAASGEQDAFDYVRELLSYL  250 (258)
T ss_dssp             HHHHHTSCCCSEEESSHHHHHHHHHHHHHHS
T ss_pred             hHhhhhccccceEeCCHHHHHHHHHHHHHhC
Confidence                467999999998566666655554443

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=98.16  E-value=1.9e-05  Score=60.96  Aligned_cols=135  Identities=13%  Similarity=0.097  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHHHHHHhC-C--CCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           26 FGPSAIDSILSAIAKAKAE-A--TPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        26 ~~~~~~~~l~~~l~~~~~d-~--~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      ++.++..++...+..++.. +  .+  .+.+.+.|+      |+..                    ...++..+..++.|
T Consensus        35 I~~~~~~~~i~~l~~l~~~~~~~~I--~l~InS~GG------~v~~--------------------g~~i~d~i~~~~~~   86 (193)
T d1tg6a1          35 IDDSVASLVIAQLLFLQSESNKKPI--HMYINSPGG------VVTA--------------------GLAIYDTMQYILNP   86 (193)
T ss_dssp             BCHHHHHHHHHHHHHHHHHCSSSCE--EEEEEECCB------CHHH--------------------HHHHHHHHHHSCSC
T ss_pred             EchHHHHHHHHHHHHhcccCCCcEE--EEEeecCcc------cHHH--------------------HHHHHHHHHhhcCc
Confidence            8889999888877777743 2  34  466665553      3221                    23456677789999


Q ss_pred             EEEEECcccchhHHHHHHhcc--EEEEecCCcceeecccccCCCCchhh-HH-------H--------HHHHhCC-HHHH
Q 041046          103 TVAAVNGHAAAAGFTLALSHD--YVIMRRDKGVLYMSEVDIGATLPDYF-TA-------L--------FRAKVGS-ATAR  163 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D--~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~-------~--------l~~~~g~-~~~a  163 (243)
                      +...+.|.|.+.|.-+++++|  .|++.++ +.|-+-....|. ..... ..       .        +.+..|. ....
T Consensus        87 V~tv~~G~aaS~a~~il~aG~~g~R~~~pn-s~~miHq~~~~~-~G~~~di~~~~~el~~~~~~i~~i~a~~Tg~~~~~i  164 (193)
T d1tg6a1          87 ICTWCVGQAASMGSLLLAAGTPGMRHSLPN-SRIMIHQPSGGA-RGQATDIAIQAEEIMKLKKQLYNIYAKHTKQSLQVI  164 (193)
T ss_dssp             EEEEEEEEEETHHHHHHHTSCTTCEEECTT-CEEEECCCCCCC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             eEEEEccchHHHHHHHhhcCccCccccCcc-cHHHhcCCccCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            999999999999999999999  5999998 777776666555 22211 10       1        1111121 2233


Q ss_pred             HHHHhccCCCCHHHHHHcCchhhhcCC
Q 041046          164 RDVLLRAKKIKGEEALRMGLVQAAYDS  190 (243)
Q Consensus       164 ~~l~l~g~~~~a~eA~~~Glv~~v~~~  190 (243)
                      ++.+-.-.-++|+||+++||||+|+.+
T Consensus       165 ~~~~~rD~~lta~EAl~yGliD~Ii~~  191 (193)
T d1tg6a1         165 ESAMERDRYMSPMEAQEFGILDKVLVH  191 (193)
T ss_dssp             HHHHSSCEEECHHHHHHHTSCSEECSS
T ss_pred             HHHhccCccCCHHHHHHcCCCCEEccC
Confidence            343433344999999999999999864

>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=7.3e-05  Score=59.95  Aligned_cols=138  Identities=15%  Similarity=0.159  Sum_probs=87.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-+++....+.+..+.+.+.+..-+  +|.+..     |.|..+.+-...      ..   .+...+. .. ....-..|
T Consensus        99 gGs~g~~~~~K~~r~~e~A~~~~~P--~I~~~d-----sgG~r~~e~~~~------l~---~~~~~~~-~~-~~~s~~iP  160 (251)
T d1vrga1          99 GGSLGEMHAKKIVKLLDLALKMGIP--VIGIND-----SGGARIQEGVDA------LA---GYGEIFL-RN-TLASGVVP  160 (251)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHHTCC--EEEEEE-----ECSBCGGGTHHH------HH---HHHHHHH-HH-HHHTTTSC
T ss_pred             hcccchHHHHHHHHHHHHHHHcCCC--EEEEEc-----CCCccccccccc------cc---cchHHHH-HH-HHHCCCCC
Confidence            4588899999999999999987655  444443     344555432210      11   1111121 12 22345799


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHH----
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEA----  178 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA----  178 (243)
                      +|+++.|+|.||+......||++|++++.+.+       ++.-              +....  ..+|+.++.++.    
T Consensus       161 ~I~vv~G~~~gG~a~~~~~~d~~im~~~~a~i-------~~aG--------------p~vv~--~~~ge~~~~eelGga~  217 (251)
T d1vrga1         161 QITVIAGPCAGGAVYSPALTDFIVMVDQTARM-------FITG--------------PNVIK--AVTGEEISQEDLGGAM  217 (251)
T ss_dssp             EEEEEEEEEBGGGGHHHHHSSEEEEETTTCBC-------BSSC--------------HHHHH--HHHCCCCCHHHHHBHH
T ss_pred             EEEEEccCccccceehhhhCceEEEEccceeE-------EecC--------------chhhh--hhcCCcCChHHccchh
Confidence            99999999999999999999999998774433       3311              22211  125788887775    


Q ss_pred             ---HHcCchhhhcCChHHHHHHHHHH
Q 041046          179 ---LRMGLVQAAYDSEEQVAEASMRL  201 (243)
Q Consensus       179 ---~~~Glv~~v~~~~~~l~~~a~~~  201 (243)
                         .+.|++|.++++.++..+.+.++
T Consensus       218 ~h~~~sG~~D~v~~de~~a~~~ir~l  243 (251)
T d1vrga1         218 VHNQKSGNAHFLADNDEKAMSLVRTL  243 (251)
T ss_dssp             HHHHTSCCCSEEESSHHHHHHHHHHH
T ss_pred             hhhhccccceEEECCHHHHHHHHHHH
Confidence               46799999999854444444443

>d1on3a1 c.14.1.4 (A:8-260) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=98.14  E-value=6.1e-05  Score=60.50  Aligned_cols=139  Identities=15%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      ..-+++....+.+..+.+.+.++.-+- |.++.      |.|..+.+-.         .....+...+..+ ..+.. ..
T Consensus       101 ~GGS~g~~~~~K~~~a~e~A~~~~lPl-V~l~~------sgG~r~~eg~---------~~l~~~~~~~~~~-~~ls~-~v  162 (253)
T d1on3a1         101 MGGSAGETQSTKVVETMEQALLTGTPF-LFFYD------SGGARIQEGI---------DSLSGYGKMFFAN-VKLSG-VV  162 (253)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHHTCCE-EEEEE------ECSBCGGGTH---------HHHHHHHHHHHHH-HHHTT-TS
T ss_pred             hcccceecccchhhhhHHHHhhcCCCe-EEEEe------cCCCcccccc---------eeccccceehHHH-HHHhc-cc
Confidence            345899999999999999999876553 44443      3444444311         1111222222333 23333 59


Q ss_pred             cEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHH----
Q 041046          102 PTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEE----  177 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~e----  177 (243)
                      |+|+++.|+|.||+.....+||++|+.++ +.++       +.-|..              ...  .+|+.++.+|    
T Consensus       163 P~i~vv~Gp~~GG~a~~~~~~d~vi~~~~-a~i~-------~aGP~v--------------Ve~--~~ge~~~~eelGga  218 (253)
T d1on3a1         163 PQIAIIAGPCAGGASYSPALTDFIIMTKK-AHMF-------ITGPQV--------------IKS--VTGEDVTADELGGA  218 (253)
T ss_dssp             CEEEEEEEEEESGGGHHHHHSSEEEEETT-CEEE-------SSCHHH--------------HHH--HHCCCCCHHHHHSH
T ss_pred             eEEEEEecCcccceeeccchhhheecccc-ceEE-------ecCcch--------------hhh--hhCCcCChHhccCH
Confidence            99999999999999999999999999876 5443       211211              111  1366666543    


Q ss_pred             ---HHHcCchhhhcCChHHHHHHHHHHHHHHh
Q 041046          178 ---ALRMGLVQAAYDSEEQVAEASMRLAKQMA  206 (243)
Q Consensus       178 ---A~~~Glv~~v~~~~~~l~~~a~~~a~~la  206 (243)
                         +.+.|.+|.++++.++    +.+.++++-
T Consensus       219 ~~h~~~sG~iD~v~~~e~~----a~~~~r~ll  246 (253)
T d1on3a1         219 EAHMAISGNIHFVAEDDDA----AELIAKKLL  246 (253)
T ss_dssp             HHHHHTTCCCSEEESSHHH----HHHHHHHHH
T ss_pred             HHhhhccccceEEECCHHH----HHHHHHHHH
Confidence               3467999999998444    555554443

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=0.00011  Score=60.68  Aligned_cols=137  Identities=15%  Similarity=0.126  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .++++....-.+.++.++.-.-+  +|-+--.+++++ |.+-++              +-....+.+.+..+..+++|+|
T Consensus       131 ~~~p~~~rKa~r~~~~a~~~~~P--ii~~vDtpG~~~-g~~~E~--------------~g~~~~~a~~~~~~~~~~vP~i  193 (316)
T d2f9ya1         131 MPAPEGYRKALRLMQMAERFKMP--IITFIDTPGAYP-GVGAEE--------------RGQSEAIARNLREMSRLGVPVV  193 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCC--EEEEEEESCSCC-SHHHHH--------------TTHHHHHHHHHHHHHTCSSCEE
T ss_pred             cccHHHHHHHHHHHHHHHHcCcc--eEEEEecCcccC-Cccccc--------------ccHHHHHHHHHHHHHhCCCceE
Confidence            58899999999999999876443  455544333332 222222              2224456778888999999999


Q ss_pred             EEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCCCHHHHHHcCch
Q 041046          105 AAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKIKGEEALRMGLV  184 (243)
Q Consensus       105 a~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~~a~eA~~~Glv  184 (243)
                      ++|-|.+.|||......+|.+++-++ ++++       +..|.+.+..+-+--.....+.+    ...+++++.+++|+|
T Consensus       194 ~vv~g~g~~gga~a~~~~d~v~m~~~-a~~s-------vispEg~AsILwkd~~~a~eaAe----alklta~dL~~lgiI  261 (316)
T d2f9ya1         194 CTVIGEGGSGGALAIGVGDKVNMLQY-STYS-------VISPEGCASILWKSADKAPLAAE----AMGIIRPRLKELKLI  261 (316)
T ss_dssp             EEEEEEEEHHHHHTTCCCSEEEECTT-CEEE-------SSCHHHHHHHHSSCSTTHHHHHH----HHTCSHHHHHTTTSC
T ss_pred             EEEEhhhhchhhhhhhhhhHHHHHhh-hHHh-------hccchhhhhHhhccchhhcchHH----HHhhhhHHHHHcCch
Confidence            99999999999998899999999988 7776       21244435554433221222222    456899999999999


Q ss_pred             hhhcCC
Q 041046          185 QAAYDS  190 (243)
Q Consensus       185 ~~v~~~  190 (243)
                      |+|++.
T Consensus       262 DeII~E  267 (316)
T d2f9ya1         262 DSIIPE  267 (316)
T ss_dssp             SCCCCC
T ss_pred             hhcccC
Confidence            999963

>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=0.00013  Score=58.78  Aligned_cols=146  Identities=12%  Similarity=0.158  Sum_probs=88.9

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCC
Q 041046           22 DEHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPM  101 (243)
Q Consensus        22 ~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  101 (243)
                      ..-+++....+.+..+++.+.+..-+  +|.++.     |.|..+.+-..         .... ..........+.....
T Consensus       108 ~gGS~g~~~~~Ki~~a~e~A~~~~lP--lI~~~~-----sgG~r~~e~~~---------sl~~-~~~~~~~~~~~~~~~v  170 (263)
T d2f9yb1         108 MGGSMGSVVGARFVRAVEQALEDNCP--LICFSA-----SGGARMQEALM---------SLMQ-MAKTSAALAKMQERGL  170 (263)
T ss_dssp             TTTCBCTHHHHHHHHHHHHHHHHTCC--EEEEEE-----ESSBCGGGTHH---------HHHH-HHHHHHHHHHHHHTTC
T ss_pred             hccccccchhhHHhHHHHHHHHcCCC--eEEEec-----CCCcccccccc---------hhhc-chhHHHHHHHHHhCCC
Confidence            34589999999999999999987655  455543     34455543221         0111 1122333334455779


Q ss_pred             cEEEEECcccchhHHH-HHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC-----CH
Q 041046          102 PTVAAVNGHAAAAGFT-LALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI-----KG  175 (243)
Q Consensus       102 p~Ia~v~G~a~G~G~~-la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~-----~a  175 (243)
                      |+|+++.|+|.||+.. +++++|++++.+. +.++       +.-|..    +...            +|+.+     ++
T Consensus       171 P~I~v~~g~~~GG~aa~~~~~~d~i~~~~~-s~i~-------~aGP~v----ve~~------------~ge~~~e~~g~a  226 (263)
T d2f9yb1         171 PYISVLTDPTMGGVSASFAMLGDLNIAEPK-ALIG-------FAGPRV----IEQT------------VREKLPPGFQRS  226 (263)
T ss_dssp             CEEEEEEEEEEHHHHTTGGGCCSEEEECTT-CBEE-------SSCHHH----HHHH------------HTSCCCTTTTBH
T ss_pred             ceEEEecCCcchHHHhhhhhcCceEeeecc-eeee-------ccCHHH----Hhhh------------cCCcCChhhccH
Confidence            9999999999999875 6777777777554 5443       311111    1111            23333     45


Q ss_pred             HHHHHcCchhhhcCChHHHHHHHHHHHHHHhcCC
Q 041046          176 EEALRMGLVQAAYDSEEQVAEASMRLAKQMAGRK  209 (243)
Q Consensus       176 ~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~~  209 (243)
                      +-..+.|+||.++++ ++.-++..++.+.|...|
T Consensus       227 ~~~~~~G~iD~vv~~-ee~~~~l~~~l~~L~~~p  259 (263)
T d2f9yb1         227 EFLIEKGAIDMIVRR-PEMRLKLASILAKLMNLP  259 (263)
T ss_dssp             HHHGGGTCCSEECCH-HHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCCCCEEECC-HHHHHHHHHHHHHHhhCC
Confidence            555678999999986 655555555666665544

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=97.52  E-value=0.00019  Score=58.61  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCc
Q 041046           23 EHRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMP  102 (243)
Q Consensus        23 ~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  102 (243)
                      .-++++...+.+.++++.+.+..-+  +|.+..     |.|+.+..-..... .  .....+   .+.. ...+....+|
T Consensus       117 gGs~~~~~~~K~~r~~~lA~~~~lP--~I~l~d-----s~Ga~~~~~~e~~~-~--~~~~g~---~~~~-~a~ls~~~VP  182 (287)
T d1pixa2         117 AGAWVPGQAECLLRASDTAKTLHVP--LVYVLN-----CSGVKFDEQEKVYP-N--RRGGGT---PFFR-NAELNQLGIP  182 (287)
T ss_dssp             TTEECTTHHHHHHHHHHHHHHHTCC--EEEEEC-----CCEECGGGHHHHSS-S--TTSTTH---HHHH-HHHHHHTTCC
T ss_pred             cccchhhHHHHHHHHHHhhhhcCCC--EEEEec-----CCcccCCcchhhcc-c--hhhHHH---HHHH-HHHHhhcCCC
Confidence            3478899999999999999887554  455544     33334432111000 0  000001   1111 2344557899


Q ss_pred             EEEEECcccchhHHHHHHhccEEEEecCCcceee--cccccCCCCchhhH-HHHHHHhCCHHHHHHHHhccCCCCHHHH-
Q 041046          103 TVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYM--SEVDIGATLPDYFT-ALFRAKVGSATARRDVLLRAKKIKGEEA-  178 (243)
Q Consensus       103 ~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~--pe~~~Gl~~p~~g~-~~l~~~~g~~~~a~~l~l~g~~~~a~eA-  178 (243)
                      +|++|.|.|.|||...+++||++++.++ +.+.+  |.+--+. .+..+. ......+. .... + -.+-+.+-+.+. 
T Consensus       183 ~Isvv~G~~~gGgAy~~~~~~~i~~~~~-a~i~~~Gp~vv~~~-~~~~~~~~~~~~ei~-~~~g-e-~~~~eeLGGa~~H  257 (287)
T d1pixa2         183 VIVGIYGTNPAGGGYHSISPTVIIAHEK-ANMAVGGAGIMGGM-NPKGHVDLEYANEIA-DMVD-R-TGKTEPPGAVDIH  257 (287)
T ss_dssp             EEEEECSEEETHHHHHHHSSSEEEEETT-CEEESCCCTTCCSC-CSSSSCCHHHHHHHH-HHHH-T-TCCCCCSSBHHHH
T ss_pred             eEEEecCCccccceeccccceeEEecCC-eEEEEECHHHhccc-chhhhhhhhhHHHHH-hhhc-c-cccccccccHHHh
Confidence            9999999999999888877777777665 55443  2222222 122221 11111111 0000 0 012334444443 


Q ss_pred             -HHcCchhhhcCChHHHHHHHHHH
Q 041046          179 -LRMGLVQAAYDSEEQVAEASMRL  201 (243)
Q Consensus       179 -~~~Glv~~v~~~~~~l~~~a~~~  201 (243)
                       ...|.+|.++++.++..+.+.++
T Consensus       258 ~~~sG~~d~v~~~e~~ai~~~r~~  281 (287)
T d1pixa2         258 YTETGFMREVYASEEGVLEGIKKY  281 (287)
T ss_dssp             TTTSCCSCEEESSHHHHHHHHHHH
T ss_pred             hhhcccceeecCCHHHHHHHHHHH
Confidence             35799999999844444444333

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.46  E-value=0.0034  Score=50.22  Aligned_cols=170  Identities=11%  Similarity=0.068  Sum_probs=105.0

Q ss_pred             eCCEEEEEEcCCCCCCC--CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHH
Q 041046            7 HGDVFVLTLTGSSDVDE--HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLY   84 (243)
Q Consensus         7 ~~~v~~i~ln~p~~~~~--N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~   84 (243)
                      +|...-+.-|+|   ..  .+++.+..+...+.++.++... +- +|.+...+ .|..|.+-+              ...
T Consensus        65 ~G~~vgvian~~---~~~~G~~~~~~a~Kaa~fi~lc~~~~-iP-li~l~Dtp-Gf~~G~~~E--------------~~g  124 (264)
T d1vrga2          65 QGKTVGIVANQP---SVLAGVLDIDSSDKAARFIRFLDAFN-IP-ILTFVDTP-GYLPGVAQE--------------HGG  124 (264)
T ss_dssp             TTEEEEEEEECT---TSGGGCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEEC-CBCCCHHHH--------------HTT
T ss_pred             cCceEEEEeccc---cccccchhhhhHHHHHHHHHHHHHhC-Cc-eEEEeecc-cccccHHHH--------------HHh
Confidence            343333334555   44  3799999999999999999764 44 66665543 344443322              223


Q ss_pred             HHHhHHHHHHHHhcCCCcEEEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHHH-Hh--
Q 041046           85 MVESFRPVVAAMMDLPMPTVAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRA-KV--  157 (243)
Q Consensus        85 ~~~~~~~~~~~l~~~~kp~Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~--  157 (243)
                      ......+++.++..+.+|.|+++-|.++|+|..-..    .+|++++.++ +.+       |+.-|.+++..+.+ .+  
T Consensus       125 ~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~am~~~~~~~d~~~awP~-a~~-------~vm~pe~aa~v~~~~~l~~  196 (264)
T d1vrga2         125 IIRHGAKLLYAYSEATVPKITVILRKAYGGAYIAMGSKHLGADMVLAWPS-AEI-------AVMGPEGAANIIFKREIEA  196 (264)
T ss_dssp             HHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEE-------ESSCHHHHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhhhccCCccCCCeeeeccc-eeE-------EecCHHHhhhhhhhhhhhh
Confidence            456678899999999999999999999998874432    5888888776 554       44123333333222 11  


Q ss_pred             -CCHHHH-HHH--HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHH
Q 041046          158 -GSATAR-RDV--LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQM  205 (243)
Q Consensus       158 -g~~~~a-~~l--~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~l  205 (243)
                       ...... .++  ...-+.-++-.+.+.|++|.|+++ .+.........+.+
T Consensus       197 ~~~~~~~~~~~~~~~~e~~~~~~~aa~~g~iD~VIdP-~dTR~~L~~~Le~l  247 (264)
T d1vrga2         197 SSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDP-RETRKYIMRALEVC  247 (264)
T ss_dssp             SSCHHHHHHHHHHHHHHHTSSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHH
T ss_pred             hhCcHHHHHHHHHHHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHH
Confidence             101111 111  011222468889999999999987 55666655544444

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.0015  Score=52.64  Aligned_cols=153  Identities=8%  Similarity=0.013  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      -.++.+..+...+.++.+++.. +- +|.+...+ .|..|.+-+              .........+++.++..+..|.
T Consensus        84 G~~~~~~~~Ka~rfi~lc~~~~-iP-lv~l~dtp-Gf~~G~~~E--------------~~g~~~~ga~~~~a~a~~~vP~  146 (271)
T d2a7sa2          84 GCLDINASEKAARFVRTCDCFN-IP-IVMLVDVP-GFLPGTDQE--------------YNGIIRRGAKLLYAYGEATVPK  146 (271)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEEC-CBCCCHHHH--------------HHCHHHHHHHHHHHHHHCCSCE
T ss_pred             CCcCHHHHHHHHHHHHHHHHhC-Cc-eEEeechh-hhhhhccHH--------------HhhHHHHHHHHHHHHHhCCCCe
Confidence            4899999999999999998764 44 66665543 344443322              2334566788999999999999


Q ss_pred             EEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhh-HHHHHH-HhCCHH----------HHHH-H
Q 041046          104 VAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYF-TALFRA-KVGSAT----------ARRD-V  166 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g-~~~l~~-~~g~~~----------~a~~-l  166 (243)
                      |+++-|.++|+|.....    .+|++++.++ +.+       |. .+.-+ ...+.+ .+. ..          +.+. .
T Consensus       147 isvi~~~~~G~~~~am~~~~~~~d~~~AwP~-A~i-------gv-Mgpegaa~v~~~~~l~-~~~~~~~~~~~~~~~~~~  216 (271)
T d2a7sa2         147 ITVITRKAYGGAYCVMGSKDMGCDVNLAWPT-AQI-------AV-MGASGAVGFVYRQQLA-EAAANGEDIDKLRLRLQQ  216 (271)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEE-------ES-SCHHHHHHHHTTTTTT-GGGTSSCCTTSSTTHHHH
T ss_pred             EEEEeCCccchhhhhhcccccccceEEEecc-eeE-------ee-cCHHHHHHHHHHHhhh-hhhhcccchHHHHHHHHH
Confidence            99999999998765432    4688888877 544       44 33333 333322 221 10          0011 1


Q ss_pred             HhccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHH
Q 041046          167 LLRAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQ  204 (243)
Q Consensus       167 ~l~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~  204 (243)
                      -..-+.-++-.|.+.|++|.|+++ .+..+......+-
T Consensus       217 e~~e~~~~p~~aa~~g~iD~VIdP-~dTR~~L~~~L~~  253 (271)
T d2a7sa2         217 EYEDTLVNPYVAAERGYVDAVIPP-SHTRGYIGTALRL  253 (271)
T ss_dssp             HHHTTTSBSHHHHHHTSSSEECCG-GGHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHcCCCCeeECH-HHHHHHHHHHHHH
Confidence            112233467788899999999988 5555554444443

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.30  E-value=0.0042  Score=49.63  Aligned_cols=156  Identities=11%  Similarity=0.081  Sum_probs=99.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      .+++.+..+...+.++.++... +- +|.+...++ |..|.+-+              .........+++.++.++..|.
T Consensus        79 G~~~~~~a~Ka~~fi~lc~~~~-iP-li~l~d~pG-f~~G~~~E--------------~~g~~~~ga~~~~a~a~~~vPk  141 (263)
T d1xnya2          79 GCLDITASEKAARFVRTCDAFN-VP-VLTFVDVPG-FLPGVDQE--------------HDGIIRRGAKLIFAYAEATVPL  141 (263)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHTT-CC-EEEEEEECC-BCCCHHHH--------------HTTHHHHHHHHHHHHHHCCSCE
T ss_pred             CCcchhhHHHHHHHHHHHHHhC-Cc-eEEeecccc-cccchhHH--------------HHhHHHHHHHHHHHHHccCCCe
Confidence            4899999999999999999764 44 666655433 44444332              2234566788999999999999


Q ss_pred             EEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHHH-HhC---------CHHHHHHHHhc
Q 041046          104 VAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRA-KVG---------SATARRDVLLR  169 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~g---------~~~~a~~l~l~  169 (243)
                      |+++-|.++|+|.....    ..|++++.++ +.+       |+.-|.++...+-+ ..-         ......++  .
T Consensus       142 itvi~~~~~Gga~~~m~~~~~~~d~~~awP~-a~~-------gvm~pe~aa~il~~~~~~~a~~~~~~~~~~~~~~~--~  211 (263)
T d1xnya2         142 ITVITRKAFGGAYDVMGSKHLGADLNLAWPT-AQI-------AVMGAQGAVNILHRRTIADAGDDAEATRARLIQEY--E  211 (263)
T ss_dssp             EEEEEEEEEHHHHHHTTCGGGTCSEEEECTT-CEE-------ESSCHHHHHHHHTHHHHHSCCTTCSSSHHHHHHHH--H
T ss_pred             EEEEecCccccceeccCCcccCCcEEEEcch-hhh-------hccCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH--H
Confidence            99999999998775533    3688888777 544       44223343333322 110         00011111  1


Q ss_pred             cCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          170 AKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       170 g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      -+..++..+.+.|++|.|+++ .+..+...+..+.+..
T Consensus       212 ~~~~~p~~aA~~g~iD~VIdP-~dTR~~L~~~L~~l~~  248 (263)
T d1xnya2         212 DALLNPYTAAERGYVDAVIMP-SDTRRHIVRGLRQLRT  248 (263)
T ss_dssp             HHHSSSHHHHHHTSSSEECCG-GGHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHcccCCcccCH-HHHHHHHHHHHHHHhc
Confidence            122457788899999999988 6666666655555543

>d1uyra1 c.14.1.4 (A:1482-1814) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.16  E-value=0.00065  Score=56.10  Aligned_cols=79  Identities=10%  Similarity=0.036  Sum_probs=54.8

Q ss_pred             CCCcEEEEECcccchhHHHHHHhccEEEEecCCcceeecccccCCCCchhhHHHHHHHhCCHHHHHHHHhccCCC--C--
Q 041046           99 LPMPTVAAVNGHAAAAGFTLALSHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRAKVGSATARRDVLLRAKKI--K--  174 (243)
Q Consensus        99 ~~kp~Ia~v~G~a~G~G~~la~~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~~~g~~~~a~~l~l~g~~~--~--  174 (243)
                      -..|+|++|.|+|+|+|..++..||++|++++ +.+.       ++    |...+.+.+            |+.+  |  
T Consensus       239 ~~iptis~v~G~~vG~gAyl~~L~d~vIm~~~-s~i~-------lt----Gp~~l~~~l------------G~eVy~s~~  294 (333)
T d1uyra1         239 HDIFTITLVTCRSVGIGAYLVRLGQRAIQVEG-QPII-------LT----GAPAINKML------------GREVYTSNL  294 (333)
T ss_dssp             HHSCEEEEESSCEETHHHHHHHHTCCEEEETT-CCEE-------SS----CHHHHHHHS------------SSCCCSCTH
T ss_pred             CCCCEEEEEeCCccccceeecccccEEEEeCC-ceEE-------ee----CHHHHHHhc------------CccccCChh
Confidence            47999999999999999999999999999988 5443       21    122222223            4433  2  


Q ss_pred             ----HHHHHHcCchhhhcCChHHHHHHHHHH
Q 041046          175 ----GEEALRMGLVQAAYDSEEQVAEASMRL  201 (243)
Q Consensus       175 ----a~eA~~~Glv~~v~~~~~~l~~~a~~~  201 (243)
                          ++-..+.|.+|.++++.++..+.+.+|
T Consensus       295 eLGG~~i~~~nGv~h~~a~dd~eai~~i~~~  325 (333)
T d1uyra1         295 QLGGTQIMYNNGVSHLTAVDDLAGVEKIVEW  325 (333)
T ss_dssp             HHHSHHHHHHHTSSSEEESSHHHHHHHHHHH
T ss_pred             HhCCHhHHhhCCCceEEeCCHHHHHHHHHHH
Confidence                334457999999999855544444444

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=97.10  E-value=0.0036  Score=50.06  Aligned_cols=158  Identities=10%  Similarity=0.017  Sum_probs=98.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcE
Q 041046           24 HRFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPT  103 (243)
Q Consensus        24 N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~  103 (243)
                      .+++.+..+...+.++.+++. .+- +|.|.-. ..|..|.+-+.              ........+++.++.++.+|.
T Consensus        81 G~~~~~~a~Kaarfi~lc~~~-~iP-lv~l~D~-pGf~~G~~~E~--------------~g~i~~ga~~~~a~a~~~vP~  143 (264)
T d1on3a2          81 GCLDINASDKAAEFVNFCDSF-NIP-LVQLVDV-PGFLPGVQQEY--------------GGIIRHGAKMLYAYSEATVPK  143 (264)
T ss_dssp             GCBCHHHHHHHHHHHHHHHHT-TCC-EEEEEEE-CCBCCCHHHHH--------------TTHHHHHHHHHHHHHHCCSCE
T ss_pred             cccChHHHHHHHHHHHHHHhc-CCc-eEEEecc-ccccccHHHHH--------------HHHHHHHHHHHHHHHcCCCCE
Confidence            489999999999999999975 444 6666544 33555443322              233566788999999999999


Q ss_pred             EEEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHHHHH-Hh---CCHH--HHHHHH-hccCC
Q 041046          104 VAAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTALFRA-KV---GSAT--ARRDVL-LRAKK  172 (243)
Q Consensus       104 Ia~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~l~~-~~---g~~~--~a~~l~-l~g~~  172 (243)
                      |+++-|.++|+|..-..    ..|++++.++ +.       +|..-|.++...+-+ .+   ....  ....+- ..-+.
T Consensus       144 itvi~rkayG~g~~am~g~~~~~d~~~aWP~-A~-------~~vMg~Egaa~v~~~~el~a~~~~~~~~~~~~~e~~~~~  215 (264)
T d1on3a2         144 ITVVLRKAYGGSYLAMCNRDLGADAVYAWPS-AE-------IAVMGAEGAANVIFRKEIKAADDPDAMRAEKIEEYQNAF  215 (264)
T ss_dssp             EEEEEEEEEHHHHHTTTCGGGTCSEEEECTT-CE-------EESSCHHHHHHHHTHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccCccccccccccCChhheeeHHh-hH-------hhhccHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHh
Confidence            99999999998875443    3577777766 44       444223333332221 11   1000  111111 11222


Q ss_pred             CCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhc
Q 041046          173 IKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAG  207 (243)
Q Consensus       173 ~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~  207 (243)
                      -++-.|.+.|++|.|+++ .+..+......+.+..
T Consensus       216 ~~p~~aA~~g~iD~VIdP-~eTR~~L~~aLe~~~~  249 (264)
T d1on3a2         216 NTPYVAAARGQVDDVIDP-ADTRRKIASALEMYAT  249 (264)
T ss_dssp             SSHHHHHHTTSSSEECCG-GGHHHHHHHHHHHGGG
T ss_pred             cCHHHHHHcCCCCeeECH-HHHHHHHHHHHHHHhc
Confidence            457888899999999987 5566655555555443

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=96.52  E-value=0.065  Score=43.22  Aligned_cols=159  Identities=7%  Similarity=0.041  Sum_probs=98.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      +++.+..+...+.++.+++..- - +|.|.-. ..|-.|-+-+.              ........+++.++.++.+|.|
T Consensus        98 ~l~~~~a~K~~rfi~lc~~~~i-P-lv~l~D~-pGf~~g~~~E~--------------~g~~r~ga~~~~a~~~~~VP~i  160 (299)
T d1pixa3          98 KLYRQGLVKMNEFVTLCARDRL-P-IVWIQDT-TGIDVGNDAEK--------------AELLGLGQSLIYSIQTSHIPQF  160 (299)
T ss_dssp             EECHHHHHHHHHHHHHHHHTTC-C-EEEEECC-CEECCSHHHHH--------------TTHHHHHHHHHHHHHTCCCCEE
T ss_pred             ccCHHHHHHHHHHHHHHHHcCC-e-EEEEEeC-CCcccchHHHh--------------hhHHHHHHHHHHHHHhhcceeE
Confidence            6899999999999999998644 4 5666543 33555533322              2235567888899999999999


Q ss_pred             EEECcccchhHHHHHH----hccEEEEecCCcceeecccccCCCCchhhHHH-HHHHhCCHH------------HHHHHH
Q 041046          105 AAVNGHAAAAGFTLAL----SHDYVIMRRDKGVLYMSEVDIGATLPDYFTAL-FRAKVGSAT------------ARRDVL  167 (243)
Q Consensus       105 a~v~G~a~G~G~~la~----~~D~~ia~~~~~~f~~pe~~~Gl~~p~~g~~~-l~~~~g~~~------------~a~~l~  167 (243)
                      +++-|.++|+|.....    ..|++++.      ..|...+|..-|..+... +.+.+. ..            .-+++.
T Consensus       161 svi~r~~~G~a~~am~g~~~~~~~~~~~------awP~aeigvMg~E~aa~vl~~~el~-~~~~~~~~~~e~~e~~~~~~  233 (299)
T d1pixa3         161 EITLRKGTAAAHYVLGGPQGNDTNAFSI------GTAATEIAVMNGETAATAMYSRRLA-KDRKAGKDLQPTIDKMNNLI  233 (299)
T ss_dssp             EEECSEEETTHHHHTTCTTCTTTEEEEE------ECTTCEEESSCHHHHHHHHHHHHHH-HHHHTTCCCHHHHHHHHHHH
T ss_pred             EEEecccccccccccccCccCcccceec------CCCccccccccchhhheeehhhhhh-hhhhhhhhhhHHHHHHHHHH
Confidence            9999999999865433    23433321      123445566223333332 223231 10            011111


Q ss_pred             h-ccCCCCHHHHHHcCchhhhcCChHHHHHHHHHHHHHHhcC
Q 041046          168 L-RAKKIKGEEALRMGLVQAAYDSEEQVAEASMRLAKQMAGR  208 (243)
Q Consensus       168 l-~g~~~~a~eA~~~Glv~~v~~~~~~l~~~a~~~a~~la~~  208 (243)
                      - .-+.-++..|.+.|++|.|+++ .+..+......+.+.++
T Consensus       234 ~~~~~~~sp~~aAs~~~iD~IIDP-~dTR~~L~~~Le~~~~~  274 (299)
T d1pixa3         234 QAFYTKSRPKVCAELGLVDEIVDM-NKIRGYVEAFTEAAYQN  274 (299)
T ss_dssp             HHHHHTTSHHHHHHHTSSSEECCT-TTHHHHHHHHHHHHTTS
T ss_pred             HHHHHhcCHHHHHHhCCcCeeECH-HHHHHHHHHHHHHHHhC
Confidence            1 1134678889999999999998 66777776666655554

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.54  Score=38.97  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEecCCCccccCCChhhHHhcccccchHHHHHHHHHhHHHHHHHHhcCCCcEE
Q 041046           25 RFGPSAIDSILSAIAKAKAEATPGSALITTSHGKFFSNGLDLAWAQAAGSRAGARERLLYMVESFRPVVAAMMDLPMPTV  104 (243)
Q Consensus        25 ~~~~~~~~~l~~~l~~~~~d~~i~~vvvl~g~g~~F~~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~I  104 (243)
                      .+.++....-.+.+..+.+...+- +|++... ..|+.|-+-..              ...+....+++.++.++..|+|
T Consensus       109 v~~p~sA~K~A~~i~d~cd~~~lP-Li~l~D~-pGF~~G~~~E~--------------~gilr~GA~iv~A~~~~~vP~i  172 (404)
T d1uyra2         109 VWHPNSAFKTAQAINDFNNGEQLP-MMILANW-RGFSGGQRDMF--------------NEVLKYGSFIVDALVDYKQPII  172 (404)
T ss_dssp             CBCHHHHHHHHHHHHHHHTTSCCC-EEECCCC-CCBCC--------------------CTHHHHHHHHHHHHHTCCSCEE
T ss_pred             ccCchHHHHHHHHHHHhhhccccc-eEEeecC-CcccCcHHHHH--------------HHHHHHHHHHHHHHHhcCCCEE
Confidence            567888889999998777656666 6666543 55777764332              2334567888999999999999


Q ss_pred             EEE--CcccchhHHHHH
Q 041046          105 AAV--NGHAAAAGFTLA  119 (243)
Q Consensus       105 a~v--~G~a~G~G~~la  119 (243)
                      ..|  .|.+.||++.+.
T Consensus       173 ~vI~~~g~~~GGa~vv~  189 (404)
T d1uyra2         173 IYIPPTGELRGGSWVVV  189 (404)
T ss_dssp             EEECTTCEEEHHHHHTT
T ss_pred             EEEeCCcccchhhhhcc
Confidence            999  677777665443

>d1th8b_ c.13.2.1 (B:) Anti-sigma factor antagonist SpoIIaa {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: SpoIIaa-like
family: Anti-sigma factor antagonist SpoIIaa
domain: Anti-sigma factor antagonist SpoIIaa
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.11  E-value=1.4  Score=29.06  Aligned_cols=44  Identities=14%  Similarity=0.296  Sum_probs=37.2

Q ss_pred             ceeeEeCCEEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 041046            2 CTLEKHGDVFVLTLTGSSDVDEHRFGPSAIDSILSAIAKAKAEATPGSALIT   53 (243)
Q Consensus         2 i~~~~~~~v~~i~ln~p~~~~~N~~~~~~~~~l~~~l~~~~~d~~i~~vvvl   53 (243)
                      |.++.++++.++++..+       ++......+.+.+..+-.++..+ .||+
T Consensus         4 i~~~~~~~v~vv~l~G~-------L~~~~~~~~~~~l~~~~~~~~~~-~iil   47 (115)
T d1th8b_           4 IDLEVKQDVLIVRLSGE-------LDHHTAEELREQVTDVLENRAIR-HIVL   47 (115)
T ss_dssp             EEEEEETTEEEEEEEEE-------ESHHHHHHHHHHHHHHHHSSCCC-EEEE
T ss_pred             EEEEEECCEEEEEEEEE-------EEHHHHHHHHHHHHHHHhcCCCC-EEEE
Confidence            56788999999999877       89999999999998876666777 6776