Citrus Sinensis ID: 041048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
EGKRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDARPVY
Secondary Structure (PSIPRED)
cccccccEEEEcccccccccEEcccHHHHHHHcccccccEEEEcccccEEEEEEEEEccEEEEEccHHHHHHHHccccccEEEEEEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHcccccEEEEEEEccccEEEEEEEEEcccEEEcccHHHHHHHcccccccEEEEEEEEccccEEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccccccccccEccHHHHHHHccccccEEEEEcccccEEEEEEEEcccEEEEcccHHHHHHHcccccccEEEEEEcccEEEEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccHHHHHHHHHHHHHccccccEEEEEEEccccccccEEEEcHHHHHHHccccccEEEEEcccccEEEEEEEEccccEEEccHHHHHHHHcccccccEEEEEEEcccEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
EGKRSCIFYKLIVPSilqdkklripdKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFiehcsihsGYFLIFKYQGNSNFNVYIFDLAIseieypsleepsdskqchvpiekdkeknsslrilpplrapcpdpfspatkvldegvcykcnkdstsgvkieylhipkdehnqetafhcpqdkgiqfkntsdevgLRWRAVTTEEKKRTVHAAEMykssnplfrviLRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIdsngkqwpvrcifknggakfskgwpefvwennldesdVCVFELIKSNDVTLKATIFRVLEDARPVY
Flexible Loop (DISEMBL)
EGKRSCIFYKLIvpsilqdkklriPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKdkeknsslrilpplrapcPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFhcpqdkgiqfkntsdevglrWRAVtteekkrtvhaaemykssnplfrVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELiksndvtlkatifrvledarpvy
Low Complexity Region (SEG)
EGKRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDARPVY
Disordered region (IsUnstruct)
*****CIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEY******************************************ATKVLDEGVCYKCNKDSTSGVKIEYLHIPKD****ETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE******
Disordered Region (DISOPRED)
***RSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKEKNSSLRILPPLRAPC************EGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIF**********
Disordered Region (DISEMBL)
EGKRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDARPVY
Disordered Region (DISPRO)
****SCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS*********************************************************************************************DE**LRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDA****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
EGKRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDARPVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q8L3W1	341	B3 domain-containing tran	yes	no	0.961	0.944	0.416	3e-68
Q9XIB5	226	B3 domain-containing prot	no	no	0.379	0.561	0.523	3e-35
Q2R9D2	406	B3 domain-containing prot	yes	no	0.955	0.788	0.257	5e-25
Q8S2E6	402	B3 domain-containing prot	no	no	0.961	0.800	0.252	8e-24
Q9ZSH7	190	B3 domain-containing prot	no	no	0.298	0.526	0.42	2e-19
Q84R27	209	B3 domain-containing prot	no	no	0.298	0.478	0.41	2e-19
Q9XIB4	190	B3 domain-containing prot	no	no	0.322	0.568	0.381	4e-16
Q851V5	1029	Putative B3 domain-contai	no	no	0.746	0.242	0.256	4e-15
Q2QMT5	334	B3 domain-containing prot	no	no	0.889	0.892	0.244	2e-14
Q2QMT2	358	B3 domain-containing prot	no	no	0.925	0.865	0.233	7e-14

>sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1

 Score =  259 bits (661), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 199/336 (59%), Gaps = 14/336 (4%)

Query: 7   IFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIG 66
            F+KLI  S +Q+K+LR+PDKFV KF DELS     T+P G +W V L+K + ++WF  G
Sbjct: 5   FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDG 64

Query: 67  WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS--LEEPSDSKQCHVPIEK 124
           W EF++  SI  GY LIF+Y+GNS F+VYIF+L+ SEI Y S  L + + +      + +
Sbjct: 65  WQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFE 124

Query: 125 DKEKNSSLRILPPLRAPCPDP----------FSPATKVLDEGVCYKCNKDSTSGVKIEYL 174
           D E   +  I P    P P P           S A + L  G         T  +  +  
Sbjct: 125 DLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRG 184

Query: 175 HIPKDEHNQETAFHCPQDKGIQFKNT-SDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLF 233
              K+   +E     P+D   + ++   +    R R VT EE++R ++AA+ ++ +NP F
Sbjct: 185 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 244

Query: 234 RVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGW 293
           RV+LRPSY+YR  ++++P+ FA KYL+GI G+I +  +  KQWPVRC++K G AKFS+GW
Sbjct: 245 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 303

Query: 294 PEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE 329
            EF  ENNL E DVCVFEL+++ D  LK T FRV E
Sbjct: 304 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

Involved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB5|REM19_ARATH B3 domain-containing protein REM19 OS=Arabidopsis thaliana GN=REM19 PE=2 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 202 DEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNG 261
           +    R R VT EE++R V+AA+ ++ +NP FRV+LRPSY+YR  ++++P+ FA KYL+G
Sbjct: 98  ESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSG 157

Query: 262 IKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLK 321
           I G+I +     KQWPVRC++K G AKFS+GW EF  ENN+ E DVCVFEL+++ D  L+
Sbjct: 158 ISGFIKL-QLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLE 216

Query: 322 ATIFRVLE 329
            T FRV E
Sbjct: 217 VTAFRVNE 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q2R9D2|Y1176_ORYSJ B3 domain-containing protein Os11g0197600 OS=Oryza sativa subsp. japonica GN=Os11g0197600 PE=2 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 156/373 (41%), Gaps = 53/373 (14%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F+++++ ++   ++++IP  F Q   ++ + +      SG  W  EL   ++  +F  GW
Sbjct: 32  FFRVLL-TLQSLERMKIPSSFNQCLQNQPTGMVSLVDRSGNKWSAELTSDSEGFFFVHGW 90

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKE 127
            EF+   SI  G FL+F Y   S F+V +F+   S I+  S      SK   +  E D+ 
Sbjct: 91  KEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEP--SGIDKISTFSAHPSKNVIIKTESDEG 148

Query: 128 KNSSLRILPPLRAPCPDPFSPAT-------------------KVLDEGVCYKCNKDSTSG 168
              +  I     AP     +  T                   K  +  VC + ++   +G
Sbjct: 149 GMVTAAITTEKMAPALKENNGITGKRTRDVDYLMEDRVVVFKKSSEANVC-ESSRRKRAG 207

Query: 169 VKIEYLHIPKDEHNQETAFHCPQDKG----------IQFKNTSDEVGLRWRAVTTEEKKR 218
                  +    HN      C  D+              +  S EV  R R V+  +++ 
Sbjct: 208 ASAGKSKVTSTSHNSTRGSSCSSDEDNSSSKSPNPPFLMRFLSGEVSRRGRCVSKGQRQL 267

Query: 219 TV-------------HA---AEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGI 262
           TV             HA   A  +KS NP    I+  SYVY    +++P  F R+ L   
Sbjct: 268 TVISQRRPVTEAEKDHALQRAREFKSKNPFAVQIMMESYVYVGFFMNIPCEFVRECLPHT 327

Query: 263 KGYITIIDSNGKQWPVRCIF--KNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTL 320
              IT+ D  GK W V  ++        FS GW +F   NNL++ DVCVFEL++ +++  
Sbjct: 328 NKRITLWDPQGKAWEVNYVYYSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELVQKDNI-- 385

Query: 321 KATIFRVLEDARP 333
           K  I+RV+ +  P
Sbjct: 386 KVHIYRVVPEITP 398

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S2E6|Y1235_ORYSJ B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp. japonica GN=Os01g0723500 PE=2 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 160/384 (41%), Gaps = 62/384 (16%)

Query: 2   GKRSCIFYKLIVPSILQDKKLRIPDKFVQ----------KFGDELSSIAKFTIPSGRMWF 51
           G+R   F+K++V    Q  +L+IP  F +          K   E S  A    PSGR W 
Sbjct: 15  GERRPHFFKVLVGDFKQ--RLKIPPNFCKHIPWEESRKAKGLKEASMAATLEGPSGRTWL 72

Query: 52  VELKKCNKQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIE------ 105
           V +++  +  +F  GW +F++  ++    F++F+Y GN+ F   +FD    E E      
Sbjct: 73  VVIRRTAEGTFFTSGWPKFVQDQALRELEFVVFRYDGNTRFTAMVFDRTACEREDLMGGG 132

Query: 106 --------YPSLEEPSDSKQCHVPIEKDKEKNS-SLRILPPLRAP--------CPDPFSP 148
                          + S+    P +    K   + R  P    P         P+P S 
Sbjct: 133 GGDRPRKKRGRPRTAAASRDAARPKKDSVGKEMVTYRASPSGGQPLQIVDSSWTPEPGST 192

Query: 149 ATKV---LDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVG 205
           A K     DE    +    S S  +    H+P+   + +      +    + ++  D++ 
Sbjct: 193 AVKNEEDADELPVCELPASSASPPR----HVPEGALDADGG--AARRGAAKTRSLQDDLA 246

Query: 206 L---------------RWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHV 250
           L               R RAV T E++R    A  ++S  P   + +   +VY + ++  
Sbjct: 247 LASIPPSIRRYKGYVSRRRAVATAERQRATEIAHAFRSPLPYCVIRMSTMHVYYSFMMRF 306

Query: 251 PTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVF 310
           PT F+R++L   +  + + D  GK W V  I  N   + S+GW  F   N L+E D CVF
Sbjct: 307 PTGFSRQHLPRERTDVVLRDPGGKVWSVLYI-PNTRDRLSRGWCAFARGNCLEEGDYCVF 365

Query: 311 ELIKSNDVTLKATIFRVLEDARPV 334
           EL+ + +   +  IFRV+E A P 
Sbjct: 366 ELVAAAE--FRVHIFRVVEPAVPA 387

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSH7|Y4158_ARATH B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1

 Score = 97.1 bits (240), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 66/100 (66%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F+KL++PS ++DK +RIP +FV+  G +LS +     P+G    ++LK+  +++WF  GW
Sbjct: 30  FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGW 89

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP 107
            EF E  SI  G+FL+F+Y+ NS+F V IF+ +  E  YP
Sbjct: 90  SEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q84R27|Y3896_ARATH B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 68/100 (68%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F+KL++PS ++DK ++IP +FV+  G +LS +     P+G    ++LK+  +++WF  GW
Sbjct: 30  FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGW 89

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP 107
            EF E  SI  G+FL+F+Y+ NS+F V IF+++  E +YP
Sbjct: 90  SEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIB4|Y1475_ARATH B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 2/110 (1%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F K+I+ S + +K +++P +FV +FG +L+       P G    + +K+   ++WF+ GW
Sbjct: 34  FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGW 92

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQ 117
            EF E  S+  G+FL F Y+G+S F V IFD++ SEIEYP L++  D+++
Sbjct: 93  SEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYP-LDDTDDNRE 141

Arabidopsis thaliana (taxid: 3702)

>sp|Q851V5|Y3216_ORYSJ Putative B3 domain-containing protein Os03g0621600 OS=Oryza sativa subsp. japonica GN=Os03g0621600 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 125/304 (41%), Gaps = 54/304 (17%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F+K+++      +++ IP KF + F D++    K    +G    V + KC+ +L    GW
Sbjct: 150 FFKVMIGGF--RRQMTIPYKFAENFRDQIQGTIKLKARNGNTCSVLVDKCSNKLVLTKGW 207

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKE 127
            EF     I  G FL+F+Y GNS F V IFD +          + +     ++       
Sbjct: 208 AEFANSHDIKMGDFLVFRYTGNSQFEVKIFDPS-------GCVKAASHNAVNIGQHAQNM 260

Query: 128 KNSSLRILPPLRAPCPDPFSPATKVLDE-------GVCYKCNKDSTSGVKIEYLHIPKDE 180
           +   + IL      C D    A  +  E        V   CNK      K++  H    E
Sbjct: 261 QGDPIEIL-----SCSDEHLRAQSLTTERQNQPEKDVIDNCNK------KMKTEHASSSE 309

Query: 181 HNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPS 240
            +QET               + EV      +  EE  R +H      S++P+F  +++ S
Sbjct: 310 DDQETP--------------TAEV----HRMKVEEMVRAIH------SNHPVFVAVMKKS 345

Query: 241 YVYRT-LLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVR-CIFKNGGAKFSKGWPEFVW 298
            V R    + +   +A +Y  G    +T +  +GK+W V+ CI K      SKGW +F  
Sbjct: 346 NVTRQPCYVAISRKYANEYFPGGDQMLT-LQRHGKRWQVKFCISKRKLRMLSKGWRKFTR 404

Query: 299 ENNL 302
           +N L
Sbjct: 405 DNEL 408

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QMT5|Y1209_ORYSJ B3 domain-containing protein LOC_Os12g40090 OS=Oryza sativa subsp. japonica GN=Os12g0591500 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 17/315 (5%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F++L+         + IP+K  + F  +++       PSG  W V + K   +L    GW
Sbjct: 8   FFRLMTGDFAHG--ISIPEKVAEIFSGQITKGFNLKSPSGETWRVGVAKVADELILKSGW 65

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSN----FNVYIFDLAISEIEYPSLEEPSDSKQCHVPIE 123
            +F +   +     L F   G+ N    F+V IFD +  E          +S  C     
Sbjct: 66  EDFAKAHELQENDLLFFTCNGHGNGSCSFDVLIFDASGCEKVSCFFTGKKNSYMC----- 120

Query: 124 KDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQ 183
           K+            L +   D  +P+  +   G  +K +       K +     + E   
Sbjct: 121 KNFNSIGGQVAGQYLSSDSEDTSTPSVLI---GSPHKASTSKKLSGKTKTNPRKEPEDPN 177

Query: 184 ETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVY 243
            + +H  ++K       +D    R+    T E++  + +    +  NP+F V+L+ ++V 
Sbjct: 178 CSHWHVIEEKNTDDDEHADYHYTRFANYLTGEERDEIFSLVSLQPGNPVFVVVLQTAHVR 237

Query: 244 RTLLLHVPTSFARKYLNGIKGYITIIDSNGKQ-WPVRCIF-KNGGAKFS-KGWPEFVWEN 300
           R  +L VPT FA  +L      I +I  N KQ W V+  +  N    F+   W +F+ EN
Sbjct: 238 RRNILIVPTRFAADHLERKSHDILLIRPNRKQKWSVKYYYLSNTTRGFNCHRWIKFIREN 297

Query: 301 NLDESDVCVFELIKS 315
            L E +VC+FEL+K 
Sbjct: 298 RLREGNVCIFELMKG 312

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q2QMT2|Y1223_ORYSJ B3 domain-containing protein Os12g0592300 OS=Oryza sativa subsp. japonica GN=Os12g0592300 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 28/338 (8%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F++L+         + IP+K   +F  +++       PSG  W V ++K   +L    GW
Sbjct: 28  FFRLMTGDFAHG--ISIPEKVADRFSGQITKGFNLKAPSGETWRVSVEKVADELILMSGW 85

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSN----FNVYIFDLAISE--------IEYPSLEEPSDS 115
            +F +   +     L F   G  N    F+V IFD +  E         +     +  ++
Sbjct: 86  EDFAKAHELQENDLLFFTCNGRCNGSFSFDVLIFDASGCEKVSCFFIGKKNSIGGQTQNA 145

Query: 116 KQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLH 175
           +Q H+   +D    S+  +  P +A      +  TK          N  S S VK E + 
Sbjct: 146 EQYHLSDSEDTSTPSTFLVGSPHKASTSKKLNGKTKTNPRKEPEDPN-SSRSHVKHEMIE 204

Query: 176 IPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRV 235
             K + + E A +            +D    R+    T E++  + +    +  NP+F  
Sbjct: 205 EEKSDDDDEHADY----------EHADYYYSRFANYLTGEEREEIFSLVSLQPGNPVFVT 254

Query: 236 ILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQ-WPVRCIFKNGGAKFS-KGW 293
           +L+   ++R  LL VP+ FA  +L+     I ++  N K+ W V+    +    F+ + W
Sbjct: 255 VLQAPQIHRKGLLIVPSGFAADHLDSRSQEILLMRPNKKEKWYVKYYHASTTRGFNCQRW 314

Query: 294 PEFVWENNLDESDVCVFELIK-SNDVTLKATIFRVLED 330
            +F+ EN L E  +C+FEL+K +  VT+   +   ++D
Sbjct: 315 IKFIRENRLREGYICIFELMKGARRVTMTVHVIGKVDD 352

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
224123414	321	predicted protein [Populus trichocarpa]	0.925	0.965	0.5	2e-86
297741372	355	unnamed protein product [Vitis vinifera]	0.949	0.895	0.504	3e-85
255556211	591	sulfotransferase, putative [Ricinus comm	0.964	0.546	0.494	8e-81
225428645	407	PREDICTED: B3 domain-containing transcri	0.949	0.781	0.447	1e-80
147855058	563	hypothetical protein VITISV_027620 [Viti	0.889	0.529	0.433	1e-72
255556221	333	DNA binding protein, putative [Ricinus c	0.937	0.942	0.413	1e-66
30685150	341	B3 domain-containing transcription facto	0.961	0.944	0.416	2e-66
297834810	341	hypothetical protein ARALYDRAFT_479415 [	0.961	0.944	0.422	2e-66
312282979	341	unnamed protein product [Thellungiella h	0.961	0.944	0.422	2e-66
356521114	437	PREDICTED: B3 domain-containing transcri	0.976	0.748	0.350	5e-63

>gi|224123414|ref|XP_002330309.1| predicted protein [Populus trichocarpa] gi|222871344|gb|EEF08475.1| predicted protein [Populus trichocarpa]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 167/334 (50%), Positives = 212/334 (63%), Gaps = 24/334 (7%)

Query: 7   IFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIG 66
           +FYKL+V SILQDKKL+IP KFV K+GDELSS+A  T+P GR+  VEL+K N +LWF  G
Sbjct: 1   MFYKLMVASILQDKKLKIPKKFVNKYGDELSSVATLTVPCGRICLVELQKVNGKLWFHKG 60

Query: 67  WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP-----SLEEPSDSKQCHVP 121
           WHEF+E  SI  GYFL+F Y+G SNFNV++FDL +SEI+ P      L+E S    C +P
Sbjct: 61  WHEFVECYSIRVGYFLVFIYEGKSNFNVHMFDLTVSEIKNPCNSLSQLQESSHDNPCLLP 120

Query: 122 IEKDKEKNSSLRILPPLRAPCPDPFSPATKVLD-EGVCYKCNKDSTSGVKIEYLHIPKDE 180
            EKD                  D     T   D  G         T G K    +I   +
Sbjct: 121 NEKD------------------DGLEKLTSTEDGAGSVIPGITRKTRGRKRMSENIEDVD 162

Query: 181 HNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPS 240
            +        + K    +NTS+ +  R RAVT EEK+RT+ AA M++S NP FRVILRPS
Sbjct: 163 KHASPGIQNVKLKSTHVRNTSETLTRRRRAVTPEEKERTIRAAHMFRSDNPFFRVILRPS 222

Query: 241 YVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWEN 300
           YVYR  LLH+P+SFAR +LN + G++T+  S+GKQWPVRC FK+G AK  +GW EFVWEN
Sbjct: 223 YVYRGFLLHIPSSFARTFLNTVTGFVTLQVSDGKQWPVRCSFKDGKAKLGQGWTEFVWEN 282

Query: 301 NLDESDVCVFELIKSNDVTLKATIFRVLEDARPV 334
           NL+E DVC+FELI + ++ LK  +FRVLEDA P 
Sbjct: 283 NLEEGDVCIFELIHAKEIVLKVAVFRVLEDAAPT 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741372|emb|CBI32503.3| unnamed protein product [Vitis vinifera]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 171/339 (50%), Positives = 219/339 (64%), Gaps = 21/339 (6%)

Query: 4   RSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWF 63
           RS +FYKLIV S+LQ K+LRIP KFV+K GD+LS++   T+P+G +W+V L K + + WF
Sbjct: 21  RSLLFYKLIVSSVLQAKRLRIPQKFVKKSGDQLSAVTTLTLPNGGVWYVGLTKADNKFWF 80

Query: 64  DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS-----LEEPSDSKQC 118
             GWHEF+E+ SIH GYFLIF+Y+GNSNFNV IFDL  SEI YPS      E+ S  KQC
Sbjct: 81  YHGWHEFVEYYSIHVGYFLIFRYEGNSNFNVNIFDLTASEINYPSNNLRNSEKTSHGKQC 140

Query: 119 HVPIEKDKEKNS---SLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLH 175
             P    +E N    S+ IL         P S  +KV DE +    ++        E LH
Sbjct: 141 --PASDGEEMNDDDDSVEILGS-----ASPVSLRSKVFDECI----DQQPLGKNYNENLH 189

Query: 176 IPKDEHNQETAFHCPQDKGIQFKNT--SDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLF 233
           + KD ++ +      +D GIQF ++  ++    RWR VT EEKKR +HAAEM++ SNP  
Sbjct: 190 LAKDANSLQVTIRSSRDIGIQFNSSELTNSECKRWRVVTMEEKKRALHAAEMFQPSNPFC 249

Query: 234 RVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGW 293
           RVILR SYV+   LLH+P+ FA KYLNG+  +I +  S+GKQW VRC+      K SKGW
Sbjct: 250 RVILRRSYVHERFLLHMPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGW 309

Query: 294 PEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDAR 332
            EFV +NNL+E DVCVFELI   DV LK +IFRVL+DAR
Sbjct: 310 TEFVKDNNLEEGDVCVFELINMEDVVLKVSIFRVLDDAR 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556211|ref|XP_002519140.1| sulfotransferase, putative [Ricinus communis] gi|223541803|gb|EEF43351.1| sulfotransferase, putative [Ricinus communis]

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 166/336 (49%), Positives = 209/336 (62%), Gaps = 13/336 (3%)

Query: 2   GKRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQL 61
            + +C+FYKLIV SIL DKKLRIP+KFV+K+ DELS IA  T+P+GR+W VEL+K NK+L
Sbjct: 15  ARTNCMFYKLIVASILHDKKLRIPEKFVKKYRDELSCIATLTVPNGRIWVVELEKVNKKL 74

Query: 62  WFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP------SLEEPSDS 115
           WF  GWHEF+E+ SI  GYFL+F+Y+G SNF V IFDL +SEI YP      S + P   
Sbjct: 75  WFCSGWHEFVEYYSIRVGYFLVFRYEGESNFRVCIFDLTVSEIRYPGNCVPASSQVPCHD 134

Query: 116 KQCHVPIEKDKEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLH 175
             CHV  +K    N    IL     P        + + D+ V  K           E L 
Sbjct: 135 NPCHVAHKKHVVTNGPTGILGS-GNPSHTTAPSRSMLFDKFVHSKWTVTGNYEASREMLL 193

Query: 176 IPKDEHNQE---TAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPL 232
             KD ++ +      +    +    K   + +  RWRAVT EEK+RT+ AA  +K  NP 
Sbjct: 194 SRKDAYDSQDIDVQLNGMDKRSPSMKIACEALTRRWRAVTPEEKQRTICAAHTFKPDNPF 253

Query: 233 FRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKG 292
           FRVILRPSYVYR  LLH+P+SFA++YL    G +T+  S GKQWPVRC+ +N GAK SKG
Sbjct: 254 FRVILRPSYVYRGFLLHIPSSFAQRYLT-TTGCMTLQVSEGKQWPVRCVCRNRGAKLSKG 312

Query: 293 WPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVL 328
           W EF W+NNL+E DVCVFELI  N   LK TIFR+L
Sbjct: 313 WTEFAWDNNLEEGDVCVFELINMN--VLKVTIFRLL 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428645|ref|XP_002281517.1| PREDICTED: B3 domain-containing transcription factor VRN1-like [Vitis vinifera]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 175/391 (44%), Positives = 221/391 (56%), Gaps = 73/391 (18%)

Query: 4   RSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWF 63
           RS +FYKLIV S+LQ K+LRIP KFV+K GD+LS++   T+P+G +W+V L K + + WF
Sbjct: 21  RSLLFYKLIVSSVLQAKRLRIPQKFVKKSGDQLSAVTTLTLPNGGVWYVGLTKADNKFWF 80

Query: 64  DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS-----LEEPSDSKQC 118
             GWHEF+E+ SIH GYFLIF+Y+GNSNFNV IFDL  SEI YPS      E+ S  KQC
Sbjct: 81  YHGWHEFVEYYSIHVGYFLIFRYEGNSNFNVNIFDLTASEINYPSNNLRNSEKTSHGKQC 140

Query: 119 HVPIEKDKEKNS---SLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLH 175
             P    +E N    S+ IL         P S  +KV DE +    ++        E LH
Sbjct: 141 --PASDGEEMNDDDDSVEILG-----SASPVSLRSKVFDECI----DQQPLGKNYNENLH 189

Query: 176 IPKDEHNQETAFHCPQDKGIQFK-----NTSDEVGL------------------------ 206
           + KD ++ +      +D GIQF      N+  +VGL                        
Sbjct: 190 LAKDANSLQVTIRSSRDIGIQFNSSELTNSECKVGLLRLDEANGKTYRTKAKRKRNEPDA 249

Query: 207 -------------------------RWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSY 241
                                    RWR VT EEKKR +HAAEM++ SNP  RVILR SY
Sbjct: 250 NESPAKHKDEVEMPDLKTSAETSKQRWRVVTMEEKKRALHAAEMFQPSNPFCRVILRRSY 309

Query: 242 VYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENN 301
           V+   LLH+P+ FA KYLNG+  +I +  S+GKQW VRC+      K SKGW EFV +NN
Sbjct: 310 VHERFLLHMPSRFAEKYLNGVSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNN 369

Query: 302 LDESDVCVFELIKSNDVTLKATIFRVLEDAR 332
           L+E DVCVFELI   DV LK +IFRVL+DAR
Sbjct: 370 LEEGDVCVFELINMEDVVLKVSIFRVLDDAR 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147855058|emb|CAN82369.1| hypothetical protein VITISV_027620 [Vitis vinifera]

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/371 (43%), Positives = 204/371 (54%), Gaps = 73/371 (19%)

Query: 24  IPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFLI 83
           IP KFV+K GD+LS++   T+P+G +W+V L K + + WF  GWHEF+E+ SIH GYFLI
Sbjct: 197 IPQKFVKKSGDQLSAVTTLTLPNGGVWYVGLTKADNKFWFYHGWHEFVEYYSIHVGYFLI 256

Query: 84  FKYQGNSNFNVYIFDLAISEIEYPS-----LEEPSDSKQCHVPIEKDKEKNS---SLRIL 135
           F+Y+GNSNFN  IFDL  SEI YPS      E+ S  KQC  P    +E N    S+ IL
Sbjct: 257 FRYEGNSNFNXNIFDLTASEINYPSNNLRNSEKTSHGKQC--PASDGEEMNDDDDSVEIL 314

Query: 136 PPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGI 195
                    P S ++KV DE +    ++        E LH+ KD +N +      +D GI
Sbjct: 315 G-----SASPVSLSSKVFDECI----DQQPLGKNYNENLHLAKDANNLQVTIRSSRDIGI 365

Query: 196 QFK-----NTSDEVGL-------------------------------------------- 206
           QF      N+  +VGL                                            
Sbjct: 366 QFNSSELTNSECKVGLLRLDEANGKTYRTKAKRKRNEPDANESPAKHKDEVEMPDLKTSA 425

Query: 207 -----RWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNG 261
                RWR VT EEKKR +HAAEM++ SNP  RVILR SYV+   LLH+P+ FA KYLNG
Sbjct: 426 ETSKQRWRVVTMEEKKRALHAAEMFQPSNPFCRVILRRSYVHERFLLHMPSRFAEKYLNG 485

Query: 262 IKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLK 321
           +  +I +  S+GKQW VRC+      K SKGW EFV +NNL+E DVCVFELI   DV LK
Sbjct: 486 VSKFIKLQTSDGKQWHVRCLSGESRVKLSKGWTEFVKDNNLEEGDVCVFELINMEDVVLK 545

Query: 322 ATIFRVLEDAR 332
            +IFRVL+DAR
Sbjct: 546 VSIFRVLDDAR 556

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556221|ref|XP_002519145.1| DNA binding protein, putative [Ricinus communis] gi|223541808|gb|EEF43356.1| DNA binding protein, putative [Ricinus communis]

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/324 (41%), Positives = 203/324 (62%), Gaps = 10/324 (3%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F+KLI+ + ++DKKLRIPD FV+KFG++LS+  + ++P G +W V L K + + WF  GW
Sbjct: 6   FHKLILSNSIKDKKLRIPDNFVKKFGNDLSAFGRLSVPGGPVWPVGLIKADDKFWFREGW 65

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQCHVPIEKDKE 127
            EF+E  SI  GYFL+F+Y+G+S F V+IF+L+ SEI Y S    +++      + +D E
Sbjct: 66  QEFMERYSIRVGYFLVFRYEGHSVFTVHIFNLSASEINYQS----NNTAGRRYLLFEDME 121

Query: 128 KNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSGVKIEYLHIPKDEHNQETAF 187
            +  +  L    +PC  P S  + V       +  K    G K     +  D + Q+ + 
Sbjct: 122 DDDFVEHLSS-SSPCLVPNSLKSDVRYYTPDAEAQKPKKRGRK----KLKVDPNQQQPSA 176

Query: 188 HCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLL 247
               +  ++F+   +    R R VT EE++R ++ A+ ++  NP  RV+LRPSY+YR  +
Sbjct: 177 QQEDEVDMRFR-FYESASARKRTVTAEERERAINTAKTFEPMNPFCRVVLRPSYLYRGCI 235

Query: 248 LHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDV 307
           +++P+ FA K+LNG+ G+I +  S+GKQWPVRC+++ G AK S+GW EF  ENN+ E DV
Sbjct: 236 MYLPSCFAEKHLNGVSGFIKLQSSDGKQWPVRCLYRGGRAKLSQGWYEFTLENNMGEGDV 295

Query: 308 CVFELIKSNDVTLKATIFRVLEDA 331
           CVFEL+KS D+ LK T+FRVLE A
Sbjct: 296 CVFELLKSRDIVLKVTVFRVLEGA 319

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685150|ref|NP_188529.2| B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana] gi|75153628|sp|Q8L3W1.1|VRN1_ARATH RecName: Full=B3 domain-containing transcription factor VRN1; AltName: Full=Protein VERNALIZATION 1 gi|21734794|gb|AAM76972.1|AF289051_1 reduced vernalization response 1 [Arabidopsis thaliana] gi|21734796|gb|AAM76973.1|AF289052_1 reduced vernalization response 1 [Arabidopsis thaliana] gi|89000959|gb|ABD59069.1| At3g18990 [Arabidopsis thaliana] gi|110741272|dbj|BAF02186.1| hypothetical protein [Arabidopsis thaliana] gi|225898655|dbj|BAH30458.1| hypothetical protein [Arabidopsis thaliana] gi|332642657|gb|AEE76178.1| B3 domain-containing transcription factor VRN1 [Arabidopsis thaliana]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/336 (41%), Positives = 199/336 (59%), Gaps = 14/336 (4%)

Query: 7   IFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIG 66
            F+KLI  S +Q+K+LR+PDKFV KF DELS     T+P G +W V L+K + ++WF  G
Sbjct: 5   FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDG 64

Query: 67  WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS--LEEPSDSKQCHVPIEK 124
           W EF++  SI  GY LIF+Y+GNS F+VYIF+L+ SEI Y S  L + + +      + +
Sbjct: 65  WQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFE 124

Query: 125 DKEKNSSLRILPPLRAPCPDP----------FSPATKVLDEGVCYKCNKDSTSGVKIEYL 174
           D E   +  I P    P P P           S A + L  G         T  +  +  
Sbjct: 125 DLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKRG 184

Query: 175 HIPKDEHNQETAFHCPQDKGIQFKNT-SDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLF 233
              K+   +E     P+D   + ++   +    R R VT EE++R ++AA+ ++ +NP F
Sbjct: 185 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 244

Query: 234 RVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGW 293
           RV+LRPSY+YR  ++++P+ FA KYL+GI G+I +  +  KQWPVRC++K G AKFS+GW
Sbjct: 245 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 303

Query: 294 PEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE 329
            EF  ENNL E DVCVFEL+++ D  LK T FRV E
Sbjct: 304 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834810|ref|XP_002885287.1| hypothetical protein ARALYDRAFT_479415 [Arabidopsis lyrata subsp. lyrata] gi|297331127|gb|EFH61546.1| hypothetical protein ARALYDRAFT_479415 [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 200/336 (59%), Gaps = 14/336 (4%)

Query: 7   IFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIG 66
            F+KLI  S +Q+K+LR+PDKFV KF DELS     T+P G +W V L+K + ++WF  G
Sbjct: 5   FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDG 64

Query: 67  WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS--LEEPSDSKQCHVPIEK 124
           W EF++  SI  GY LIF+Y+GNS F+VYIF+L+ SEI Y S  L + + +      + +
Sbjct: 65  WQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFE 124

Query: 125 DKEKNSSLRILPPLRAPCPDPFS--PATK--------VLDEGVCYKCNKDSTSGVKIEYL 174
           D E   +  I P    P P P S  PA K         L  G         T  +  +  
Sbjct: 125 DLEDEDAEFIFPSSVYPSPLPESTVPANKGYAGSAIQSLFTGSVKAEEATPTPKIPKKRG 184

Query: 175 HIPKDEHNQETAFHCPQDKGIQFKNT-SDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLF 233
              K+   +E     P+D   + ++   +    R R VT EE++R ++AA+ ++ +NP F
Sbjct: 185 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 244

Query: 234 RVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGW 293
           RV+LRPSY+YR  ++++P+ FA KYL+GI G+I +  +  KQWPVRC++K G AKFS+GW
Sbjct: 245 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 303

Query: 294 PEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE 329
            EF  ENNL E DVCVFEL+++ D  LK T FRV E
Sbjct: 304 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282979|dbj|BAJ34355.1| unnamed protein product [Thellungiella halophila]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/336 (42%), Positives = 199/336 (59%), Gaps = 14/336 (4%)

Query: 7   IFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIG 66
            F+KLI  S +Q+K+LR+PDKFV KF DELS     T+P G +W V L+K   ++WF  G
Sbjct: 5   FFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKAENKIWFQDG 64

Query: 67  WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS--LEEPSDSKQCHVPIEK 124
           W EF++  SI  GY LIF+Y+GNS F+VYIF+L+ SEI Y S  L + + +      + +
Sbjct: 65  WQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFE 124

Query: 125 DKEKNSSLRILPP--LRAPCPDPFSPATK--------VLDEGVCYKCNKDSTSGVKIEYL 174
           D E   +  I P     +P PD   PA K         L  G         T  V  +  
Sbjct: 125 DLEDEDAEVIYPSSVYPSPLPDSTVPANKGYSGSAIQSLFTGPVKAEEATPTPKVPKKRG 184

Query: 175 HIPKDEHNQETAFHCPQDKGIQFKNT-SDEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLF 233
              K+   +E     P+D   + ++   +    R R VT EE++R ++AA+ ++ +NP F
Sbjct: 185 RKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFF 244

Query: 234 RVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGW 293
           RV+LRPSY+YR  ++++P+ FA KYL+GI G+I +  +  KQWPVRC++K G AKFS+GW
Sbjct: 245 RVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGW 303

Query: 294 PEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE 329
            EF  ENNL E DVCVFEL+++ D  LK T FRV E
Sbjct: 304 YEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521114|ref|XP_003529203.1| PREDICTED: B3 domain-containing transcription factor VRN1-like [Glycine max]

 Score =  247 bits (631), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 139/397 (35%), Positives = 210/397 (52%), Gaps = 70/397 (17%)

Query: 4   RSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWF 63
           R C F KL++P+ LQ ++LRIPD F++K+G +LS+IA  T+P G +W + LKK + ++WF
Sbjct: 3   RPC-FDKLVLPTTLQSRQLRIPDNFLRKYGTQLSTIATLTVPDGSVWPIGLKKADNRIWF 61

Query: 64  DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQC----- 118
             GW +F++  SI  GYFL+F Y+GNS+F V+IF+L+ SE+ Y S     +   C     
Sbjct: 62  VDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEVNYQSAMRNHNEGSCFANYH 121

Query: 119 HVPIEKDKEKNSSLRILPPLR-----------APCPDPFSP------ATKVLDEGVCYKC 161
           H+  E +   +  L  L P             A   D  +P      A + L  G     
Sbjct: 122 HIFDEMEDVDSLGLSDLSPQYLTPGALQSKGFAGSVDQLTPGKSHTPALQNLFNGGSKLN 181

Query: 162 NKDSTSGVKIEYLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRW------------- 208
             +   G     L     + NQ T     Q   ++FK +++E+ LR+             
Sbjct: 182 RVNWGDGGSAFSLKDANSQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNSNEEAVNKTAK 241

Query: 209 ----------------------------------RAVTTEEKKRTVHAAEMYKSSNPLFR 234
                                             R VT EE++R ++A++ ++ +NP  R
Sbjct: 242 KKRKSEPYGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKTFEPTNPFCR 301

Query: 235 VILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWP 294
           V+LRPSY+YR  ++++P++FA K LNG+ G+I +  SNG+QW VRC+++ G AK S+GW 
Sbjct: 302 VVLRPSYLYRGCIMYLPSTFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWF 361

Query: 295 EFVWENNLDESDVCVFELIKSNDVTLKATIFRVLEDA 331
           EF  ENNL E DVCVFEL++  +V L+ T+FRV EDA
Sbjct: 362 EFTVENNLGEGDVCVFELLRMKEVVLQVTVFRVTEDA 398

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2085849	341	VRN1 "REDUCED VERNALIZATION RE	0.952	0.935	0.433	1.8e-64
TAIR|locus:2010262	226	RTV1 "AT1G49480" [Arabidopsis	0.379	0.561	0.523	4.6e-34
TAIR|locus:2133362	190	AT4G01580 [Arabidopsis thalian	0.298	0.526	0.42	4.4e-20
TAIR|locus:2085859	209	AT3G18960 [Arabidopsis thalian	0.298	0.478	0.41	7.2e-20
TAIR|locus:504956318	190	AT1G49475 [Arabidopsis thalian	0.322	0.568	0.381	9e-18
TAIR|locus:2144831	308	AT5G09780 [Arabidopsis thalian	0.423	0.461	0.278	1.8e-12
TAIR|locus:2158108	334	AT5G66980 [Arabidopsis thalian	0.265	0.266	0.329	1.8e-12
TAIR|locus:2119166	337	AT4G33280 [Arabidopsis thalian	0.367	0.364	0.274	9.6e-12
TAIR|locus:2086082	302	REM22 "REPRODUCTIVE MERISTEM 2	0.447	0.496	0.243	1.5e-10
TAIR|locus:2172319	301	AT5G18090 [Arabidopsis thalian	0.268	0.299	0.287	5.8e-10

TAIR|locus:2085849 VRN1 "REDUCED VERNALIZATION RESPONSE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 146/337 (43%), Positives = 205/337 (60%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
             F+KLI  S +Q+K+LR+PDKFV KF DELS     T+P G +W V L+K + ++WF  GW
Sbjct:     6 FHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVALTVPDGHVWRVGLRKADNKIWFQDGW 65

Query:    68 HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPS--LEEPSDSKQCHVPIEKD 125
              EF++  SI  GY LIF+Y+GNS F+VYIF+L+ SEI Y S  L + + +      + +D
Sbjct:    66 QEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLMDSAHNHFKRARLFED 125

Query:   126 KEKNSSLRILPPLRAPCPDPFSPATKVLDEGVCYKCNKDSTSG-VKIEYL----HIPKD- 179
              E   +  I P    P P P S  T   ++G      +   +G VK E       IPK  
Sbjct:   126 LEDEDAEVIFPSSVYPSPLPES--TVPANKGYASSAIQTLFTGPVKAEEPTPTPKIPKKR 183

Query:   180 ---EHN---QETAFHCPQDKGIQFKNTSDE-VGLRWRAVTTEEKKRTVHAAEMYKSSNPL 232
                + N   +E     P+D   + ++   E    R R VT EE++R ++AA+ ++ +NP 
Sbjct:   184 GRKKKNADPEEINSSAPRDDDPENRSKFYESASARKRTVTAEERERAINAAKTFEPTNPF 243

Query:   233 FRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKG 292
             FRV+LRPSY+YR  ++++P+ FA KYL+GI G+I +  +  KQWPVRC++K G AKFS+G
Sbjct:   244 FRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLAE-KQWPVRCLYKAGRAKFSQG 302

Query:   293 WPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLE 329
             W EF  ENNL E DVCVFEL+++ D  LK T FRV E
Sbjct:   303 WYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNE 339

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0010048 "vernalization response" evidence=IMP

TAIR|locus:2010262 RTV1 "AT1G49480" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 67/128 (52%), Positives = 93/128 (72%)

Query:   202 DEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNG 261
             +    R R VT EE++R V+AA+ ++ +NP FRV+LRPSY+YR  ++++P+ FA KYL+G
Sbjct:    98 ESASARKRTVTAEERERAVNAAKTFEPTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSG 157

Query:   262 IKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLK 321
             I G+I +     KQWPVRC++K G AKFS+GW EF  ENN+ E DVCVFEL+++ D  L+
Sbjct:   158 ISGFIKL-QLGEKQWPVRCLYKAGRAKFSQGWYEFTLENNIGEGDVCVFELLRTRDFVLE 216

Query:   322 ATIFRVLE 329
              T FRV E
Sbjct:   217 VTAFRVNE 224

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2133362 AT4G01580 [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 42/100 (42%), Positives = 66/100 (66%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
             F+KL++PS ++DK +RIP +FV+  G +LS +     P+G    ++LK+  +++WF  GW
Sbjct:    30 FFKLVLPSTMKDKMMRIPPRFVKLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEIWFHEGW 89

Query:    68 HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP 107
              EF E  SI  G+FL+F+Y+ NS+F V IF+ +  E  YP
Sbjct:    90 SEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2085859 AT3G18960 [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 41/100 (41%), Positives = 68/100 (68%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
             F+KL++PS ++DK ++IP +FV+  G +LS +     P+G    ++LK+  +++WF  GW
Sbjct:    30 FFKLVLPSTMKDKMMKIPPRFVKLQGSKLSEVVTLETPAGFKRSIKLKRIGEEIWFHEGW 89

Query:    68 HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYP 107
              EF E  SI  G+FL+F+Y+ NS+F V IF+++  E +YP
Sbjct:    90 SEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYP 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:504956318 AT1G49475 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 9.0e-18, P = 9.0e-18
 Identities = 42/110 (38%), Positives = 70/110 (63%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
             F K+I+ S + +K +++P +FV +FG +L+       P G    + +K+   ++WF+ GW
Sbjct:    34 FIKIILLSRIIEKMMKVPARFV-RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWFEKGW 92

Query:    68 HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSKQ 117
              EF E  S+  G+FL F Y+G+S F V IFD++ SEIEYP L++  D+++
Sbjct:    93 SEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYP-LDDTDDNRE 141

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2144831 AT5G09780 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 41/147 (27%), Positives = 69/147 (46%)

Query:     1 EGKRSCIFYKLIVPSILQDKKLR-IPDKFVQKFGD-ELSSIAKFTIPSGRMWFVELKKCN 58
             E ++   F+K++  S +  +  R IP  FV  F D ELS   KF +  G  W V++ K N
Sbjct:    12 EERKQESFFKVLKRSDMSSEDTRAIPYDFVINFSDNELSGDMKFRVQWGNSWKVKISK-N 70

Query:    59 KQLWF--DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFDLAISEIEYPSLEEPSDSK 116
              + +F    GW +F+   ++    FL F ++G  +F V IF+    E+  P     S + 
Sbjct:    71 PRFYFMEKSGWEKFVIDNALGDHEFLTFTHKGQMSFTVKIFNKDGKEMMQPPQSRASFAS 130

Query:   117 QCHVPIEKDKEKNSSLRILPPLRAPCP 143
                V  E+D ++   + +    R+  P
Sbjct:   131 SSRVKTEQDVKREEEVLVSSDSRSRGP 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2158108 AT5G66980 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.8e-12, Sum P(2) = 1.8e-12
 Identities = 31/94 (32%), Positives = 45/94 (47%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQ----LWF 63
             F+K+ +P      +L IP  F+      L   A      GR+W VE K  + +    ++F
Sbjct:    10 FFKVFLPEF-GSHELVIPPAFIDMLEKPLPKEAFLVDEIGRLWCVETKTEDTEERFCVFF 68

Query:    64 DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIF 97
               GW  F    S+  G FL+F Y G+S F+V IF
Sbjct:    69 TKGWQSFANDQSLEFGDFLVFSYDGDSRFSVTIF 102

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA

TAIR|locus:2119166 AT4G33280 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 36/131 (27%), Positives = 59/131 (45%)

Query:     8 FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCN-KQLWFDIG 66
             F +L++P      +L IP KF      +L  I     PSG  + V +++ + K + F  G
Sbjct:    25 FTQLLLPGF--HNRLVIPRKFSTHCKRKLPQIVTLKSPSGVTYNVGVEEDDEKTMAFRFG 82

Query:    67 WHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFD---LAISEIEY--PSLEEPSDSKQCHVP 121
             W +F++  S+     L+FK+ G S F V +FD   L      Y          +K  H  
Sbjct:    83 WDKFVKDHSLEENDLLVFKFHGVSEFEVLVFDGQTLCEKPTSYFVRKCGHAEKTKASHTG 142

Query:   122 IEKDKEKNSSL 132
              E+++  NS +
Sbjct:   143 YEQEEHINSDI 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2086082 REM22 "REPRODUCTIVE MERISTEM 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 39/160 (24%), Positives = 69/160 (43%)

Query:   166 TSGVKIE-----YLHIPKDEHNQETAFHCPQDKGIQFKNTSDEVGLRWRAVTTEEKKRTV 220
             +SG+K E      + + K+E + E+      +  ++ K T D    + +    + KK++ 
Sbjct:   132 SSGIKKEEGENSLIDVKKEEESDESPGRA--EFLVRKKKTEDSKSSKKKMTRNKVKKKSK 189

Query:   221 HAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRC 280
               ++      P F++ +R SY+     L +P  F   ++       TI   NG  W V C
Sbjct:   190 SKSKQVLDGVPEFKITIRKSYLK---FLAIPKHFVDDHIPNKSKIFTIRHPNGGSWKVLC 246

Query:   281 IFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTL 320
             + +     FS G+ +   E  L   D C F+LIK  +  L
Sbjct:   247 LVREIRTIFSGGYSKLAREFPLMVGDKCTFKLIKPFEFVL 286

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2172319 AT5G18090 [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 27/94 (28%), Positives = 43/94 (45%)

Query:   231 PLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQ-WPVRCIFKNGGAKF 289
             P F + ++ SY+   + L +P  F   ++        I D  GK+ W V   F N   +F
Sbjct:   210 PEFTLTIKKSYL---IFLGIPKMFEELHMPTEATMFKIHDPEGKRSWDVMYKFSNNQTRF 266

Query:   290 SKGWPEFVWENNLDESDVCVFELIKSNDVTLKAT 323
               GW     E  L+  DVC F LIK  ++ ++ +
Sbjct:   267 CAGWIRLAKELGLEIGDVCTFTLIKPTEMLVRVS 300

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L3W1	VRN1_ARATH	No assigned EC number	0.4166	0.9611	0.9442	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036489001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (355 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	3e-18
smart01019	96	smart01019, B3, B3 DNA binding domain	1e-15
pfam02362	97	pfam02362, B3, B3 DNA binding domain	2e-15
cd10017	98	cd10017, B3_DNA, Plant-specific B3-DNA binding dom	1e-10
smart01019	96	smart01019, B3, B3 DNA binding domain	9e-10
pfam02362	97	pfam02362, B3, B3 DNA binding domain	5e-09

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 78.5 bits (194), Expect = 3e-18
 Identities = 39/99 (39%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 231 PLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGY-ITIIDSNGKQWPVRCIF--KNGGA 287
           PLF  +L PS V     L +P  FA+ +L   +G  +T+ D +GK+W V+      +G  
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPPKEGVEVTLEDPDGKKWTVKLKKRKNSGRM 60

Query: 288 KFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFR 326
             S GW EFV  N L E D  VFEL   N    K  IFR
Sbjct: 61  VLSGGWKEFVRANGLKEGDFLVFELDGRN-SKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 233 FRVILRPSYVYRTLLLHVPTSFARKYLNGIK-GYITIIDSNGKQWPVRCIFKNGG--AKF 289
           F   L  S V +   L +P  FA      +K   IT++D +GK W V+  ++        
Sbjct: 1   FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKEITLLDPDGKSWKVKLKYRGSSGMFLL 60

Query: 290 SKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRV 327
           + GW EFV  N L   D   FEL  + +  +   IFR 
Sbjct: 61  TGGWKEFVKANGLKAGDSLTFELDGNGEFVVS--IFRK 96

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 233 FRVILRPSYVYRTLLLHVPTSFARKYLNGIKGY-ITIIDSNGKQWPVRCIFKNGGAKF-- 289
           F  +L PS V +   L +P  FA +     KG  IT++D +GK W V+  ++  G ++  
Sbjct: 1   FVKVLTPSDVSKDGRLVLPKKFAEENGLNKKGQEITLLDPDGKSWTVKLRYRKSGRRYLL 60

Query: 290 SKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRV 327
           + GW EFV  N L   D  VF+L           IFR 
Sbjct: 61  TSGWKEFVKANGLKAGDSLVFKLDGGG--KFVVGIFRK 96

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 7  IFYKLIVPS-ILQDKKLRIPDKFVQKFGDELSSI-AKFTIPSGRMWFVELKKCNK--QLW 62
          +F+K++ PS +    +L +P KF +        +      P G+ W V+LKK     ++ 
Sbjct: 2  LFFKVLTPSDVSSLGRLVLPKKFAKAHLPPKEGVEVTLEDPDGKKWTVKLKKRKNSGRMV 61

Query: 63 FDIGWHEFIEHCSIHSGYFLIFKYQG-NSNFNVYIFD 98
             GW EF+    +  G FL+F+  G NS F V IF 
Sbjct: 62 LSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98

The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain

 Score = 54.6 bits (132), Expect = 9e-10
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 8  FYKLIVPS-ILQDKKLRIPDKFVQKFGDELSSI-AKFTIPSGRMWFVELKKCNKQLWFDI 65
          F+K +  S + +  +L +P +F +  G  L         P G+ W V+LK       F +
Sbjct: 1  FFKTLTTSDVSKHGRLVLPKQFAESNGPPLKPKEITLLDPDGKSWKVKLKYRGSSGMFLL 60

Query: 66 --GWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFD 98
            GW EF++   + +G  L F+  GN  F V IF 
Sbjct: 61 TGGWKEFVKANGLKAGDSLTFELDGNGEFVVSIFR 95

Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations. Length = 96

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 4/95 (4%)

Query: 8  FYKLIVPS-ILQDKKLRIPDKFVQKFG-DELSSIAKFTIPSGRMWFVELKKCNKQ--LWF 63
          F K++ PS + +D +L +P KF ++ G ++         P G+ W V+L+          
Sbjct: 1  FVKVLTPSDVSKDGRLVLPKKFAEENGLNKKGQEITLLDPDGKSWTVKLRYRKSGRRYLL 60

Query: 64 DIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYIFD 98
            GW EF++   + +G  L+FK  G   F V IF 
Sbjct: 61 TSGWKEFVKANGLKAGDSLVFKLDGGGKFVVGIFR 95

This is a family of plant transcription factors with various roles in development, the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.88
PF02362	100	B3: B3 DNA binding domain; InterPro: IPR003340 Two	99.84
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	94.77
PF03754	114	DUF313: Domain of unknown function (DUF313) ; Inte	94.72

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.88  E-value=1.7e-22  Score=159.50  Aligned_cols=95  Identities=40%  Similarity=0.730  Sum_probs=72.5

Q ss_pred             EEEEccCcccCCCceeecCHHHHHhhcCC--CCeeEEEEeCCCCeEEEEEEEe--CCeeeeccChhHhhhhcCCCCCCEE
Q 041048          233 FRVILRPSYVYRTLLLHVPTSFARKYLNG--IKGYITIIDSNGKQWPVRCIFK--NGGAKFSKGWPEFVWENNLDESDVC  308 (335)
Q Consensus       233 F~~~m~~s~v~~~~~L~iP~~F~~~~l~~--~~~~i~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~F~~~n~L~~GD~c  308 (335)
                      |+++|+++++...+.|.||++|++.|...  ...+|+|+|++|+.|+|++.+.  .++.+|++||.+||++|+|++||+|
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~~~~~~~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv~~n~L~~GD~~   80 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHGGNKRKSREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFVRDNGLKEGDVC   80 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS--SS--CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHHHHCT--TT-EE
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhCCCcCCCeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHHHHcCCCCCCEE
Confidence            78999999988877899999999999643  5679999999999999999643  4578899999999999999999999


Q ss_pred             EEEEecCCCcEEEEEEEee
Q 041048          309 VFELIKSNDVTLKATIFRV  327 (335)
Q Consensus       309 vFel~~~~~~~~~V~Ifr~  327 (335)
                      +|+++++....+.|+|||.
T Consensus        81 ~F~~~~~~~~~~~v~i~~~   99 (100)
T PF02362_consen   81 VFELIGNSNFTLKVHIFRK   99 (100)
T ss_dssp             EEEE-SSSCE-EEEEEE--
T ss_pred             EEEEecCCCceEEEEEEEC
Confidence            9999987767789999986

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species

Probab=99.84  E-value=1.5e-20  Score=148.42  Aligned_cols=93  Identities=33%  Similarity=0.657  Sum_probs=70.0

Q ss_pred             EEEEcccCcc-cCceEecchHHHHhhCCC--CCceEEEEcCCCCEEEEEE--EEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048            8 FYKLIVPSIL-QDKKLRIPDKFVQKFGDE--LSSIAKFTIPSGRMWFVEL--KKCNKQLWFDIGWHEFIEHCSIHSGYFL   82 (335)
Q Consensus         8 Ffk~~~~~~~-~~~~l~IP~~F~~~~~~~--~~~~v~L~~~~g~~W~V~l--~~~~~~~~~~~GW~~F~~~~~L~~Gd~l   82 (335)
                      |+|++++++. ....|.||..|++.|+..  .+..|+|.+++|+.|.|.+  .+..+.++|++||++||++|+|++||+|
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~~~~~~~~~v~l~~~~g~~W~v~~~~~~~~~~~~l~~GW~~Fv~~n~L~~GD~~   80 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHGGNKRKSREVTLKDPDGRSWPVKLKYRKNSGRYYLTGGWKKFVRDNGLKEGDVC   80 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS--SS--CEEEEEETTTEEEEEEEEEECCTTEEEEETTHHHHHHHCT--TT-EE
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhCCCcCCCeEEEEEeCCCCEEEEEEEEEccCCeEEECCCHHHHHHHcCCCCCCEE
Confidence            8999987655 336799999999999754  5779999999999999999  4556789999999999999999999999


Q ss_pred             EEEEcccceE--EEEEEeCC
Q 041048           83 IFKYQGNSNF--NVYIFDLA  100 (335)
Q Consensus        83 vF~~~g~~~F--~V~if~~~  100 (335)
                      +|++++++.|  .|.||+.+
T Consensus        81 ~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   81 VFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             EEEE-SSSCE-EEEEEE---
T ss_pred             EEEEecCCCceEEEEEEECc
Confidence            9999998777  99999753

The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=94.77  E-value=0.16  Score=40.87  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             EEEEccCcccCCC-ceeecCHHHHHhh--cC----------------CCCeeEEEEeCCCCeEEEEEEEeCC-----eee
Q 041048          233 FRVILRPSYVYRT-LLLHVPTSFARKY--LN----------------GIKGYITIIDSNGKQWPVRCIFKNG-----GAK  288 (335)
Q Consensus       233 F~~~m~~s~v~~~-~~L~iP~~F~~~~--l~----------------~~~~~i~L~~~~G~~W~v~~~~~~~-----~~~  288 (335)
                      +.+.|..+++... .+|.||-.=+..+  |.                ...-.|+|.|+.++.|.+++.+-..     .+.
T Consensus        24 ~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~~~~~Yv  103 (114)
T PF03754_consen   24 IEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGNGTSNYV  103 (114)
T ss_pred             EeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccCCceEEE
Confidence            4468888888754 4789987755222  21                1234689999999999999875322     578


Q ss_pred             eccChhHhhhh
Q 041048          289 FSKGWPEFVWE  299 (335)
Q Consensus       289 l~~GW~~F~~~  299 (335)
                      |..||..++.+
T Consensus       104 L~~gWn~VV~~  114 (114)
T PF03754_consen  104 LNSGWNKVVED  114 (114)
T ss_pred             EEcChHhhccC
Confidence            99999998864

>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function

Probab=94.72  E-value=0.16  Score=40.95  Aligned_cols=66  Identities=23%  Similarity=0.410  Sum_probs=48.9

Q ss_pred             EEEEcccCccc--CceEecchHHHHh--h----------------CCCCCceEEEEcCCCCEEEEEEEEeCC-----eEE
Q 041048            8 FYKLIVPSILQ--DKKLRIPDKFVQK--F----------------GDELSSIAKFTIPSGRMWFVELKKCNK-----QLW   62 (335)
Q Consensus         8 Ffk~~~~~~~~--~~~l~IP~~F~~~--~----------------~~~~~~~v~L~~~~g~~W~V~l~~~~~-----~~~   62 (335)
                      +-|.++.+++.  ..+|.||..=+..  |                .....-.|+|.+|+++.|.+.|.+..-     .+.
T Consensus        24 ~~K~L~~tDv~~~qsRLsmP~~qi~~~dFLt~eE~~~i~~~~~~~~~~~Gv~V~lvdp~~~~~~m~lkkW~mg~~~~~Yv  103 (114)
T PF03754_consen   24 IEKTLFKTDVDPHQSRLSMPFNQIIDNDFLTEEEKRIIKEEKKNNDKKKGVEVILVDPSLRKWTMRLKKWNMGNGTSNYV  103 (114)
T ss_pred             EeeeecccCCCCCCceeeccHHHhcccccCCHHHHHHHHHhhccCcccCCceEEEECCcCcEEEEEEEEecccCCceEEE
Confidence            56777777663  3788888764411  1                124567899999999999999998753     577


Q ss_pred             EcccHHHHHhH
Q 041048           63 FDIGWHEFIEH   73 (335)
Q Consensus        63 ~~~GW~~F~~~   73 (335)
                      |..||..+|++
T Consensus       104 L~~gWn~VV~~  114 (114)
T PF03754_consen  104 LNSGWNKVVED  114 (114)
T ss_pred             EEcChHhhccC
Confidence            99999999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	335
4i1k_A	146	Crystal Structure Of Vrn1 (residues 208-341) Length		8e-37
1yel_A	104	Structure Of The Hypothetical Arabidopsis Thaliana		3e-04

>pdb|4I1K|A Chain A, Crystal Structure Of Vrn1 (residues 208-341) Length = 146

Iteration: 1
 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 94/128 (73%), Gaps = 1/128 (0%)
Query: 202 DEVGLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNG 261
           +    R R VT EE++R ++AA+ ++ +NP FRV+LRPSY+YR  ++++P+ FA KYL+G
Sbjct: 18  ESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSG 77
Query: 262 IKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLK 321
           I G+I +  +  KQWPVRC++K G AKFS+GW EF  ENNL E DVCVFEL+++ D  LK
Sbjct: 78  ISGFIKVQLAE-KQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLK 136
Query: 322 ATIFRVLE 329
            T FRV E
Sbjct: 137 VTAFRVNE 144

>pdb|1YEL|A Chain A, Structure Of The Hypothetical Arabidopsis Thaliana Protein At1g16640.1 Length = 104

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 20 KKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSG 79
          K L IP  F + F             SGR W V +KK  ++++  +GW  F++  ++  G
Sbjct: 22 KSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDG 81
Query: 80 YFLIFKYQGNSNFNVYIF 97
           +L F Y  +  F V I+
Sbjct: 82 KYLQFIYDRDRTFYVIIY 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	9e-29
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	3e-15
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	6e-16

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 104

 Score =  106 bits (265), Expect = 9e-29
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 8   FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
           F K  +      K L IP  F + F             SGR W V +KK  ++++  +GW
Sbjct: 11  FMKPFISEKSS-KSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGW 69

Query: 68  HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFD 98
             F++  ++  G +L F Y  +  F V I+ 
Sbjct: 70  ENFVKDNNLEDGKYLQFIYDRDRTFYVIIYG 100

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 104

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 225 MYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKN 284
           M  +    F          ++L   +P  F   +       + ++D +G+ W VR   + 
Sbjct: 3   MADTGEVQFMKPFISEKSSKSL--EIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRG 60

Query: 285 GGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIF 325
                + GW  FV +NNL++     F   +    T    I+
Sbjct: 61  EKVFLTVGWENFVKDNNLEDGKYLQFIYDRDR--TFYVIIY 99

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130

 Score = 72.4 bits (177), Expect = 6e-16
 Identities = 30/108 (27%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 222 AAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKG-------YITIIDSNGK 274
           +    +S+  LF   + PS V +   L +P   A K+              +   D NGK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 275 QWPVRCIFKNGGAK--FSKGWPEFVWENNLDESDVCVFELIKSNDVTL 320
            W  R  + N       +KGW  FV E NL   DV  F      D  L
Sbjct: 63  VWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQL 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	100.0
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.95
1yel_A	104	AT1G16640; CESG, protein structure initiative, str	99.92
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.84
4i1k_A	146	B3 domain-containing transcription factor VRN1; B3	99.82
1wid_A	130	DNA-binding protein RAV1; DNA-binding domain, stru	99.59

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=6.5e-34  Score=238.51  Aligned_cols=125  Identities=54%  Similarity=1.010  Sum_probs=113.6

Q ss_pred             ccccccCCHHHHHHHHHHHhhcCCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEeCCCCeEEEEEEEeC
Q 041048          205 GLRWRAVTTEEKKRTVHAAEMYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKN  284 (335)
Q Consensus       205 ~~r~~~~t~~e~~~a~~~a~~~~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~~~G~~W~v~~~~~~  284 (335)
                      +++++++|.+|+++|+++|++|+|++|+|+++|++|++++++.|.||.+|++.|+|....+|+|+++ |+.|+|++.+.+
T Consensus        21 ~~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~   99 (146)
T 4i1k_A           21 SARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKA   99 (146)
T ss_dssp             -----CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEET
T ss_pred             ccCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeC
Confidence            5678899999999999999999999999999999999998878999999999999998999999999 599999998888


Q ss_pred             CeeeeccChhHhhhhcCCCCCCEEEEEEecCCCcEEEEEEEeeCCC
Q 041048          285 GGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFRVLED  330 (335)
Q Consensus       285 ~~~~l~~GW~~F~~~n~L~~GD~cvFel~~~~~~~~~V~Ifr~~~~  330 (335)
                      ++..|++||.+||++|+|++||+|+|||+++.+++|+|||||++++
T Consensus       100 ~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~IfR~~e~  145 (146)
T 4i1k_A          100 GRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTAFRVNEY  145 (146)
T ss_dssp             TEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEEECCC--
T ss_pred             CcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEEEeccCC
Confidence            8899999999999999999999999999998888999999999986

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.95  E-value=1.3e-27  Score=189.43  Aligned_cols=99  Identities=25%  Similarity=0.518  Sum_probs=93.7

Q ss_pred             CccccEEEEcccCcccCceEecchHHHHhhCCCCCceEEEEcCCCCEEEEEEEEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048            3 KRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFL   82 (335)
Q Consensus         3 ~~~~~Ffk~~~~~~~~~~~l~IP~~F~~~~~~~~~~~v~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~Gd~l   82 (335)
                      ...|+|||++++++. ...|.||..|+++|.+.++..|+|++++|++|+|.+.+.++.++|++||++||.+|+|++||+|
T Consensus         6 ~~~p~F~K~l~~~~~-~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~l   84 (104)
T 1yel_A            6 TGEVQFMKPFISEKS-SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYL   84 (104)
T ss_dssp             CCCEEEEEECCHHHH-TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEE
T ss_pred             CCCCCEEEEECCCCc-cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEE
Confidence            356899999998874 4799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcccceEEEEEEeCCcc
Q 041048           83 IFKYQGNSNFNVYIFDLAIS  102 (335)
Q Consensus        83 vF~~~g~~~F~V~if~~~~~  102 (335)
                      +|+|++++.|.|.||++++|
T Consensus        85 vF~~~~~~~f~V~If~~s~C  104 (104)
T 1yel_A           85 QFIYDRDRTFYVIIYGHNMC  104 (104)
T ss_dssp             EEEECSSSEEEEEEECSSCC
T ss_pred             EEEEcCCCeEEEEEECCCCC
Confidence            99999999999999999987

>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.92  E-value=1.4e-24  Score=172.04  Aligned_cols=99  Identities=19%  Similarity=0.333  Sum_probs=90.6

Q ss_pred             cCCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEeCCCCeEEEEEEEeCCeeeeccChhHhhhhcCCCCC
Q 041048          226 YKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDES  305 (335)
Q Consensus       226 ~~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~~~G~~W~v~~~~~~~~~~l~~GW~~F~~~n~L~~G  305 (335)
                      ..+.+|.|.++|.+++.  ...|.||.+|++.|++....+|+|++++|+.|+|++....++.+|++||++||++|+|++|
T Consensus         4 ~~~~~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~G   81 (104)
T 1yel_A            4 ADTGEVQFMKPFISEKS--SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDG   81 (104)
T ss_dssp             CCCCCEEEEEECCHHHH--TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTT
T ss_pred             CCCCCCCEEEEECCCCc--cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCC
Confidence            35788999999999873  3589999999999988888999999999999999998877889999999999999999999


Q ss_pred             CEEEEEEecCCCcEEEEEEEeeC
Q 041048          306 DVCVFELIKSNDVTLKATIFRVL  328 (335)
Q Consensus       306 D~cvFel~~~~~~~~~V~Ifr~~  328 (335)
                      |+|+|+++++.  .|+|+||+..
T Consensus        82 D~lvF~~~~~~--~f~V~If~~s  102 (104)
T 1yel_A           82 KYLQFIYDRDR--TFYVIIYGHN  102 (104)
T ss_dssp             CEEEEEECSSS--EEEEEEECSS
T ss_pred             CEEEEEEcCCC--eEEEEEECCC
Confidence            99999999887  8999999964

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.84  E-value=3.2e-20  Score=152.57  Aligned_cols=104  Identities=29%  Similarity=0.369  Sum_probs=90.9

Q ss_pred             CCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCC-------eeEEEEeCCCCeEEEEEEEeC--CeeeeccChhHhh
Q 041048          227 KSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIK-------GYITIIDSNGKQWPVRCIFKN--GGAKFSKGWPEFV  297 (335)
Q Consensus       227 ~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~-------~~i~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~F~  297 (335)
                      .+..|.|.++|++|++.....|.||++|++.|||...       .+|+|+|.+|+.|.+++.+.+  .++.|++||..||
T Consensus         8 ~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV   87 (130)
T 1wid_A            8 RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV   87 (130)
T ss_dssp             CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHH
T ss_pred             CCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHH
Confidence            3567899999999999876789999999999998755       478999999999999998754  4678999999999


Q ss_pred             hhcCCCCCCEEEEEEecCCCcEEEEEEEeeCCC
Q 041048          298 WENNLDESDVCVFELIKSNDVTLKATIFRVLED  330 (335)
Q Consensus       298 ~~n~L~~GD~cvFel~~~~~~~~~V~Ifr~~~~  330 (335)
                      ++|+|++||+|+|++..+.+..+.|.+.|..+.
T Consensus        88 ~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~  120 (130)
T 1wid_A           88 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS  120 (130)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSC
T ss_pred             HHcCCCCCCEEEEEEecCCCcEEEEEEEECCCC
Confidence            999999999999999986656788899888643

>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}

Probab=99.82  E-value=1.2e-19  Score=151.77  Aligned_cols=96  Identities=21%  Similarity=0.360  Sum_probs=87.4

Q ss_pred             ccccEEEEcccCcccCc-eEecchHHHHhhCCCCCceEEEEcCCCCEEEEEEEEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048            4 RSCIFYKLIVPSILQDK-KLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFL   82 (335)
Q Consensus         4 ~~~~Ffk~~~~~~~~~~-~l~IP~~F~~~~~~~~~~~v~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~Gd~l   82 (335)
                      ..|.|.++|+++++... .|.||..|++.|.+.....|+|+++ |+.|.|.+...++..+|++||.+||.+|+|++||+|
T Consensus        45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~c  123 (146)
T 4i1k_A           45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVC  123 (146)
T ss_dssp             SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEE
T ss_pred             CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEE
Confidence            46899999999998543 6999999999999988999999999 599999999888899999999999999999999999


Q ss_pred             EEEEcccc--eEEEEEEeCC
Q 041048           83 IFKYQGNS--NFNVYIFDLA  100 (335)
Q Consensus        83 vF~~~g~~--~F~V~if~~~  100 (335)
                      +|+|+++.  .|.|.||...
T Consensus       124 vFeli~~~~~~f~V~IfR~~  143 (146)
T 4i1k_A          124 VFELLRTRDFVLKVTAFRVN  143 (146)
T ss_dssp             EEEECSSSSCEEEEEEECCC
T ss_pred             EEEEecCCceEEEEEEEecc
Confidence            99999975  7999999653

>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2

Probab=99.59  E-value=7.1e-15  Score=120.57  Aligned_cols=95  Identities=19%  Similarity=0.339  Sum_probs=79.6

Q ss_pred             CccccEEEEcccCccc-CceEecchHHHHhhCCCCC-------ceEEEEcCCCCEEEEEEEEeC--CeEEEcccHHHHHh
Q 041048            3 KRSCIFYKLIVPSILQ-DKKLRIPDKFVQKFGDELS-------SIAKFTIPSGRMWFVELKKCN--KQLWFDIGWHEFIE   72 (335)
Q Consensus         3 ~~~~~Ffk~~~~~~~~-~~~l~IP~~F~~~~~~~~~-------~~v~L~~~~g~~W~V~l~~~~--~~~~~~~GW~~F~~   72 (335)
                      .+.+.|.|+|+++++. ...|.||..|++.|.+.+.       ..++|+|+.|+.|++.+...+  ...+|+.||..||+
T Consensus         9 ~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~   88 (130)
T 1wid_A            9 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK   88 (130)
T ss_dssp             CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred             CCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHH
Confidence            3556899999999884 2689999999999887554       468899999999999998764  57889999999999


Q ss_pred             HcCCCCCcEEEEEEccc--ceEEEEEE
Q 041048           73 HCSIHSGYFLIFKYQGN--SNFNVYIF   97 (335)
Q Consensus        73 ~~~L~~Gd~lvF~~~g~--~~F~V~if   97 (335)
                      +|+|++||+|+|.++.+  .++.|-+.
T Consensus        89 ~~~L~~GD~~~F~~~~~~~~~l~I~~r  115 (130)
T 1wid_A           89 EKNLRAGDVVSFSRSNGQDQQLYIGWK  115 (130)
T ss_dssp             HTTCCTTCEEEEEECCSSSCCEEEEEE
T ss_pred             HcCCCCCCEEEEEEecCCCcEEEEEEE
Confidence            99999999999999874  45555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	2e-23
d1yela1	102	b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid	5e-22
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	1e-17
d1wida_	117	b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre	0.004

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 8  FYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGW 67
          F K  +      K L IP  F + F             SGR W V +KK  ++++  +GW
Sbjct: 9  FMKPFISE-KSSKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGW 67

Query: 68 HEFIEHCSIHSGYFLIFKYQGNSNFNVYIFD 98
            F++  ++  G +L F Y  +  F V I+ 
Sbjct: 68 ENFVKDNNLEDGKYLQFIYDRDRTFYVIIYG 98

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 86.9 bits (215), Expect = 5e-22
 Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 4/102 (3%)

Query: 225 MYKSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKN 284
           M  +    F          ++L   +P  F   +       + ++D +G+ W VR   + 
Sbjct: 1   MADTGEVQFMKPFISEKSSKSL--EIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRG 58

Query: 285 GGAKFSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFR 326
                + GW  FV +NNL++     F   +  D T    I+ 
Sbjct: 59  EKVFLTVGWENFVKDNNLEDGKYLQFIYDR--DRTFYVIIYG 98

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.4 bits (185), Expect = 1e-17
 Identities = 30/109 (27%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 227 KSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKG-------YITIIDSNGKQWPVR 279
           +S+  LF   + PS V +   L +P   A K+              +   D NGK W  R
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 280 CIFKNGGAK--FSKGWPEFVWENNLDESDVCVFELIKSNDVTLKATIFR 326
             + N       +KGW  FV E NL   DV  F      D  L      
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKS 109

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 4   RSC--IFYKLIVPS-ILQDKKLRIPDKFVQKFGDELSS-------IAKFTIPSGRMWFVE 53
           RS   +F K + PS + +  +L IP    +K     SS       +  F   +G++W   
Sbjct: 1   RSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFR 60

Query: 54  LKKCN--KQLWFDIGWHEFIEHCSIHSGYFLIFKYQGNSNFNVYI 96
               N  +      GW  F++  ++ +G  + F      +  +YI
Sbjct: 61  YSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYI 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.95
d1yela1	102	At1g16640 {Thale cress (Arabidopsis thaliana) [Tax	99.9
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.82
d1wida_	117	DNA-binding protein RAV1 {Thale cress (Arabidopsis	99.59
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	98.11
d1na6a1	175	Restriction endonuclease EcoRII, N-terminal domain	97.47

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.7e-28  Score=191.80  Aligned_cols=99  Identities=25%  Similarity=0.517  Sum_probs=94.2

Q ss_pred             CccccEEEEcccCcccCceEecchHHHHhhCCCCCceEEEEcCCCCEEEEEEEEeCCeEEEcccHHHHHhHcCCCCCcEE
Q 041048            3 KRSCIFYKLIVPSILQDKKLRIPDKFVQKFGDELSSIAKFTIPSGRMWFVELKKCNKQLWFDIGWHEFIEHCSIHSGYFL   82 (335)
Q Consensus         3 ~~~~~Ffk~~~~~~~~~~~l~IP~~F~~~~~~~~~~~v~L~~~~g~~W~V~l~~~~~~~~~~~GW~~F~~~~~L~~Gd~l   82 (335)
                      -+.++|||+++|+... .+|.||..|+++|++..+.+|+|++++|+.|.|++.+.++.++|+.||++||++|+|++||+|
T Consensus         4 ~~~~~Ffkv~~~~~~~-~~L~IP~~F~~~~~~~~~~~i~L~d~~G~~W~v~~~~~~~~~~~~~GW~~Fv~~n~L~~GD~~   82 (102)
T d1yela1           4 TGEVQFMKPFISEKSS-KSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYL   82 (102)
T ss_dssp             CCCEEEEEECCHHHHT-TCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEE
T ss_pred             CCCCeEEEEEcCcccC-CCEECCHHHHHhCCCCCCCEEEEEcCCCCEEEEEEEEeCCeEEEccCHHHHHHHcCCCcCCEE
Confidence            3578999999998753 689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEcccceEEEEEEeCCcc
Q 041048           83 IFKYQGNSNFNVYIFDLAIS  102 (335)
Q Consensus        83 vF~~~g~~~F~V~if~~~~~  102 (335)
                      +|+|+++++|.|.|||.++|
T Consensus        83 vF~~~~~~~f~V~If~~s~C  102 (102)
T d1yela1          83 QFIYDRDRTFYVIIYGHNMC  102 (102)
T ss_dssp             EEEECSSSEEEEEEECSSCC
T ss_pred             EEEEcCCcEEEEEEeCCCCC
Confidence            99999999999999999988

>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: At1g16640
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=4.5e-24  Score=166.40  Aligned_cols=98  Identities=19%  Similarity=0.349  Sum_probs=89.8

Q ss_pred             CCCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCCeeEEEEeCCCCeEEEEEEEeCCeeeeccChhHhhhhcCCCCCC
Q 041048          227 KSSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIKGYITIIDSNGKQWPVRCIFKNGGAKFSKGWPEFVWENNLDESD  306 (335)
Q Consensus       227 ~~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~~~i~L~~~~G~~W~v~~~~~~~~~~l~~GW~~F~~~n~L~~GD  306 (335)
                      .++.|+|.++|.+++...  .|.||..|++.|.+...++|+|+|++|+.|+|++...++..+|+.||.+||++|+|++||
T Consensus         3 ~~~~~~Ffkv~~~~~~~~--~L~IP~~F~~~~~~~~~~~i~L~d~~G~~W~v~~~~~~~~~~~~~GW~~Fv~~n~L~~GD   80 (102)
T d1yela1           3 DTGEVQFMKPFISEKSSK--SLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGK   80 (102)
T ss_dssp             CCCCEEEEEECCHHHHTT--CEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTC
T ss_pred             CCCCCeEEEEEcCcccCC--CEECCHHHHHhCCCCCCCEEEEEcCCCCEEEEEEEEeCCeEEEccCHHHHHHHcCCCcCC
Confidence            467899999999987643  699999999999999899999999999999999988888899999999999999999999


Q ss_pred             EEEEEEecCCCcEEEEEEEeeC
Q 041048          307 VCVFELIKSNDVTLKATIFRVL  328 (335)
Q Consensus       307 ~cvFel~~~~~~~~~V~Ifr~~  328 (335)
                      +|+|++.++.  .|.|+||+..
T Consensus        81 ~~vF~~~~~~--~f~V~If~~s  100 (102)
T d1yela1          81 YLQFIYDRDR--TFYVIIYGHN  100 (102)
T ss_dssp             EEEEEECSSS--EEEEEEECSS
T ss_pred             EEEEEEcCCc--EEEEEEeCCC
Confidence            9999999877  9999999753

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.82  E-value=4e-20  Score=147.44  Aligned_cols=104  Identities=28%  Similarity=0.350  Sum_probs=89.1

Q ss_pred             CCCCeEEEEccCcccCCCceeecCHHHHHhhcCCCC-------eeEEEEeCCCCeEEEEEEEe--CCeeeeccChhHhhh
Q 041048          228 SSNPLFRVILRPSYVYRTLLLHVPTSFARKYLNGIK-------GYITIIDSNGKQWPVRCIFK--NGGAKFSKGWPEFVW  298 (335)
Q Consensus       228 ~~~p~F~~~m~~s~v~~~~~L~iP~~F~~~~l~~~~-------~~i~L~~~~G~~W~v~~~~~--~~~~~l~~GW~~F~~  298 (335)
                      +..+.|.++|++|++.+...|.||+.|+++|++...       ..|+++|.+|+.|++++.+.  +....|+.||.+||+
T Consensus         2 ~~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~   81 (117)
T d1wida_           2 SAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVK   81 (117)
T ss_dssp             CCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHH
T ss_pred             CCceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHH
Confidence            456899999999999876689999999999987643       35999999999999999764  346789999999999


Q ss_pred             hcCCCCCCEEEEEEecCCCcEEEEEEEeeCCCC
Q 041048          299 ENNLDESDVCVFELIKSNDVTLKATIFRVLEDA  331 (335)
Q Consensus       299 ~n~L~~GD~cvFel~~~~~~~~~V~Ifr~~~~~  331 (335)
                      +|+|++||+|+|+.....+..+.|.+.+..+..
T Consensus        82 ~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          82 EKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             HTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HcCCCCCCEEEEEEEeCCCCEEEEEEEECCCCC
Confidence            999999999999998766667888888876654

>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.59  E-value=6.3e-15  Score=116.80  Aligned_cols=97  Identities=19%  Similarity=0.339  Sum_probs=79.4

Q ss_pred             cccEEEEcccCcccC-ceEecchHHHHhhCCCCCc-------eEEEEcCCCCEEEEEEEEe--CCeEEEcccHHHHHhHc
Q 041048            5 SCIFYKLIVPSILQD-KKLRIPDKFVQKFGDELSS-------IAKFTIPSGRMWFVELKKC--NKQLWFDIGWHEFIEHC   74 (335)
Q Consensus         5 ~~~Ffk~~~~~~~~~-~~l~IP~~F~~~~~~~~~~-------~v~L~~~~g~~W~V~l~~~--~~~~~~~~GW~~F~~~~   74 (335)
                      .+-|.|+|++++... .+|.||..|++.|.+.+..       .+.+.|+.|+.|+|.+...  ....+|..||.+||++|
T Consensus         4 ~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~~~~~~~l~~GW~~Fv~~~   83 (117)
T d1wida_           4 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEK   83 (117)
T ss_dssp             EEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHHT
T ss_pred             ceEEEEEecchhcCCCCEEEECHHHHHHhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEecCHHHHHHHc
Confidence            356999999998853 4799999999999865433       4899999999999999875  35678999999999999


Q ss_pred             CCCCCcEEEEEEcc--cceEEEEEEeCCc
Q 041048           75 SIHSGYFLIFKYQG--NSNFNVYIFDLAI  101 (335)
Q Consensus        75 ~L~~Gd~lvF~~~g--~~~F~V~if~~~~  101 (335)
                      +|++||.|+|..+.  +..|.|.+...++
T Consensus        84 ~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~  112 (117)
T d1wida_          84 NLRAGDVVSFSRSNGQDQQLYIGWKSRSG  112 (117)
T ss_dssp             TCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred             CCCCCCEEEEEEEeCCCCEEEEEEEECCC
Confidence            99999999999875  3466666665443

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=5e-06  Score=67.52  Aligned_cols=99  Identities=11%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             CCCCeEEEEccCcccCCCce----eecCHHHHHhhcCCCC--------eeEEEE--eCCCCeEEEEEEEeC--------C
Q 041048          228 SSNPLFRVILRPSYVYRTLL----LHVPTSFARKYLNGIK--------GYITII--DSNGKQWPVRCIFKN--------G  285 (335)
Q Consensus       228 ~~~p~F~~~m~~s~v~~~~~----L~iP~~F~~~~l~~~~--------~~i~L~--~~~G~~W~v~~~~~~--------~  285 (335)
                      .....|.+.|+++++...-.    ++||++++..++|...        +.+.|.  |.+|..|++++.+.+        +
T Consensus        13 ~~~~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTRn   92 (175)
T d1na6a1          13 ENYFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRN   92 (175)
T ss_dssp             SSEEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCC
T ss_pred             CceEEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCccc
Confidence            34567999999999886533    9999999999987311        145555  888999999998743        3


Q ss_pred             eeeeccChhHhhhhcCCCCCCEEEEEEecCC--CcEEEEEEEe
Q 041048          286 GAKFSKGWPEFVWENNLDESDVCVFELIKSN--DVTLKATIFR  326 (335)
Q Consensus       286 ~~~l~~GW~~F~~~n~L~~GD~cvFel~~~~--~~~~~V~Ifr  326 (335)
                      .+.|+.+|+.|...+.+..||..+|-+....  .-..-|.|..
T Consensus        93 eyRiT~~g~~~~~~~~~n~G~l~i~af~~~~~~~~~~~~~vwv  135 (175)
T d1na6a1          93 EKRITRWGRGSPLQDPENTGALTLLAFKLDEQGGDCKEVNIWV  135 (175)
T ss_dssp             EEEEECCCTTSGGGCGGGTTCEEEEEEECCTTSCCCCEEEEEE
T ss_pred             cEEEEeccccccccCccccccEEEEEeecCCCCCceeEEEEEE
Confidence            5889999999999999999999999885322  2234444443

>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: Type II restriction endonuclease effector domain
domain: Restriction endonuclease EcoRII, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=9.8e-05  Score=59.73  Aligned_cols=82  Identities=10%  Similarity=0.012  Sum_probs=66.1

Q ss_pred             ccEEEEcccCcccCce-----EecchHHHHhhCCCCC-----c---eEEEE--cCCCCEEEEEEEEeC--------CeEE
Q 041048            6 CIFYKLIVPSILQDKK-----LRIPDKFVQKFGDELS-----S---IAKFT--IPSGRMWFVELKKCN--------KQLW   62 (335)
Q Consensus         6 ~~Ffk~~~~~~~~~~~-----l~IP~~F~~~~~~~~~-----~---~v~L~--~~~g~~W~V~l~~~~--------~~~~   62 (335)
                      .-|.|++++++.....     +.||+.++..+.+.+.     +   .+.|+  |..|..|+++....+        +...
T Consensus        16 ~~F~K~LtasD~g~tg~HQaG~~IPK~~ae~~FP~l~~~~e~nP~~~l~~~i~d~~g~~w~fR~iYyn~~~~ggTRneyR   95 (175)
T d1na6a1          16 FVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEKR   95 (175)
T ss_dssp             EEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEEE
T ss_pred             EEEEEEcccccccccCCccceeeecHHHHHHhCCCCCcccccCCCceEEEEEecCCCCeeEEEEEEECCccCCCccccEE
Confidence            4589999998775433     9999999999876321     1   34434  899999999998764        5688


Q ss_pred             EcccHHHHHhHcCCCCCcEEEEEEc
Q 041048           63 FDIGWHEFIEHCSIHSGYFLIFKYQ   87 (335)
Q Consensus        63 ~~~GW~~F~~~~~L~~Gd~lvF~~~   87 (335)
                      |+.+|+.|...+.+..||+++|-+.
T Consensus        96 iT~~g~~~~~~~~~n~G~l~i~af~  120 (175)
T d1na6a1          96 ITRWGRGSPLQDPENTGALTLLAFK  120 (175)
T ss_dssp             EECCCTTSGGGCGGGTTCEEEEEEE
T ss_pred             EEeccccccccCccccccEEEEEee
Confidence            9999999999999999999999884