Citrus Sinensis ID: 041050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------41
Protein Sequence
MHVLFYDTGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHccHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mhvlfydtgfepgasaAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLgqytesgscrDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKClergefgntftgldkhsqfrdsgngqkapitKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIsllsttaadaedpqTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSlliedgalpwivqnanneaapIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Flexible Loop (DISEMBL)
mhvlfydtgfepgasaAEDIAEIRKLLQNEIHMRKTAEEELNKLKSrlgqytesgscrdaeMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSlahrtlsssltfraEMRRLRIEF
Low Complexity Region (SEG)
MHVLFYDTGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGlssllmllrsFEDETIRRVaagaianlamnaeanQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Disordered region (IsUnstruct)
***LFYDTGF*********IAEIRKL******************************************************EEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGL***************PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIR************************
Disordered Region (DISOPRED)
*HVL*********************************************************************************************DQ**KCLERGEFGNTFTGLDKHS*************TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Disordered Region (DISEMBL)
MHVLFYDTGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHS********QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Disordered Region (DISPRO)
MHVLFYDTGF*PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFG*TFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHVLFYDTGFEPGASAAEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGSCRDAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	408	2.2.26 [Sep-21-2011]
Q9LPC6	894	Armadillo repeat-containi	yes	no	0.946	0.431	0.745	1e-170
Q5VQ09	891	Armadillo repeat-containi	yes	no	0.941	0.430	0.698	1e-151
Q9FZ06	919	Armadillo repeat-containi	no	no	0.943	0.418	0.680	1e-145
Q0DV28	945	Armadillo repeat-containi	no	no	0.889	0.384	0.469	4e-86
Q9SV36	1051	Armadillo repeat-containi	no	no	0.916	0.355	0.442	2e-80
P39968	578	Vacuolar protein 8 OS=Sac	yes	no	0.605	0.427	0.250	9e-10
Q6FJV1	582	Vacuolar protein 8 OS=Can	yes	no	0.605	0.424	0.250	2e-09
Q6CX49	579	Vacuolar protein 8 OS=Klu	yes	no	0.629	0.443	0.245	7e-09
Q6C5Y8	573	Vacuolar protein 8 OS=Yar	yes	no	0.610	0.434	0.24	2e-08
Q7RXW1	578	Vacuolar protein 8 OS=Neu	N/A	no	0.553	0.391	0.264	4e-08

>sp|Q9LPC6|ARK2_ARATH Armadillo repeat-containing kinesin-like protein 2 OS=Arabidopsis thaliana GN=ARK2 PE=1 SV=2

 Score =  596 bits (1537), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 298/400 (74%), Positives = 344/400 (86%), Gaps = 14/400 (3%)

Query: 13  GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDE 72
           G   A +   +++ L+NE+ +RK+AEEE++K+KS+    T SG   DA +++L K LEDE
Sbjct: 505 GVVTASEFTRLKESLENEMKLRKSAEEEVSKVKSQSTLKTRSGEGEDAGITRLQKLLEDE 564

Query: 73  TLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD----KHSQFRDSGNG 128
            LQK+KLEEE+ ILRSQL+QLTFEADQM++CL+RG  GN+++G D    +HSQ R+S NG
Sbjct: 565 ALQKKKLEEEVTILRSQLVQLTFEADQMRRCLDRGAPGNSYSGTDSLPSRHSQARESVNG 624

Query: 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM 188
           QKAP   L EQVGL KIL LLES+DAN+RIHAVKVVANLAAEEANQEKIVEAGGL+SLLM
Sbjct: 625 QKAPFATLCEQVGLQKILQLLESDDANIRIHAVKVVANLAAEEANQEKIVEAGGLTSLLM 684

Query: 189 LLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA 248
           LLRS+EDET+RRVAAGAIANLAMN E +Q+LI+ QGGISLLS TAADAEDPQTLRMVAGA
Sbjct: 685 LLRSYEDETVRRVAAGAIANLAMN-EVSQQLIVDQGGISLLSLTAADAEDPQTLRMVAGA 743

Query: 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
           IANLCGNDKLQ +L S+GGI+ALLGMVRCGHPDVL+QVARGIANFAKCESRA TQ     
Sbjct: 744 IANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRATTQ----- 798

Query: 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL 368
               GVKSGRSLLIEDGALPWIVQ+AN+EAAPIRRHIELALCHLAQHEVNA+EMISGGAL
Sbjct: 799 ----GVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEVNAKEMISGGAL 854

Query: 369 WELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           WELVRIS++CSREDIRSLAHRTLSSS  FR+E+RRL I+F
Sbjct: 855 WELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQF 894

Involved in the control of epidermal-cell morphogenesis in roots and helical growth of roots by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. Seems to be involved in the control of cell-file rotation (or twisting).
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VQ09|ARK2_ORYSJ Armadillo repeat-containing kinesin-like protein 2 OS=Oryza sativa subsp. japonica GN=Os06g0137100 PE=2 SV=1

 Score =  535 bits (1379), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 282/404 (69%), Positives = 334/404 (82%), Gaps = 20/404 (4%)

Query: 11  EPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLE 70
           EP +S   ++ E++ LLQNE  +R++AE+E N LK+++  + +  +   AE+ KL K L+
Sbjct: 500 EPTSS---EVGEVQNLLQNEKVLRQSAEDEANDLKNQVLHWKKMEAAATAEVVKLRKMLD 556

Query: 71  DETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGE-FGNTFTGLD------KHSQFR 123
            E  QK KL+EEI +L+SQLLQL+ +AD+ ++ L+RG+  G  F G D      ++SQ R
Sbjct: 557 TEASQKEKLDEEIAVLKSQLLQLSLDADETRRSLDRGDGSGKIFPGFDSLMSHSRNSQPR 616

Query: 124 DSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGL 183
           +  NG K PI KLFEQVGL KILSLLESE+ +VR+HAVKVVANLAAEEANQEKIVEAGGL
Sbjct: 617 EQSNGPKPPIAKLFEQVGLQKILSLLESEEPDVRVHAVKVVANLAAEEANQEKIVEAGGL 676

Query: 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLR 243
           +SLLMLLRS EDETIRRVAAGAIANLAMN E NQ+LIMAQGG+SLLS TA+DAEDPQTLR
Sbjct: 677 TSLLMLLRSSEDETIRRVAAGAIANLAMN-ETNQDLIMAQGGVSLLSMTASDAEDPQTLR 735

Query: 244 MVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQ 303
           MVAGAIANLCGNDKLQ +LR EGGI+ALLGMV+CGHPDVL+QVARGIANFAKCESRAATQ
Sbjct: 736 MVAGAIANLCGNDKLQTRLRGEGGIKALLGMVKCGHPDVLAQVARGIANFAKCESRAATQ 795

Query: 304 VRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI 363
                    G K G+SLLI+DGALPWIV+NANNEAAPIRRHIELALCHLAQHEVN++++I
Sbjct: 796 ---------GNKVGKSLLIDDGALPWIVKNANNEAAPIRRHIELALCHLAQHEVNSKDII 846

Query: 364 SGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           S GALWELVRISRDCSREDIR LA+RTL+SS T ++EMRRLRIE
Sbjct: 847 SEGALWELVRISRDCSREDIRMLAYRTLTSSPTLQSEMRRLRIE 890

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FZ06|ARK3_ARATH Armadillo repeat-containing kinesin-like protein 3 OS=Arabidopsis thaliana GN=ARK3 PE=1 SV=1

 Score =  515 bits (1326), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/401 (68%), Positives = 320/401 (79%), Gaps = 16/401 (3%)

Query: 14  ASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73
           A A E+++E++KLLQ E   +  AEEE+N+LK +L ++ +  +  ++E+ +LHK LE+ET
Sbjct: 528 APALEEVSELKKLLQKEAQSKMAAEEEVNRLKHQLNEFKKVEASGNSEIMRLHKMLENET 587

Query: 74  LQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDSGN 127
            QK KLE EI  L SQLLQL+  AD+ ++ LE+     T    D      +  Q +D GN
Sbjct: 588 QQKEKLEGEIATLHSQLLQLSLTADETRRNLEQHGSEKTSGARDSLMSQLRLPQIQDPGN 647

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLL 187
            +K P+ +LFEQVGL KILSLLE+EDA+VRIHAVKVVANLAAEEANQ++IVEAGGL+SLL
Sbjct: 648 AEKPPVARLFEQVGLQKILSLLEAEDADVRIHAVKVVANLAAEEANQQQIVEAGGLTSLL 707

Query: 188 MLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAG 247
           MLL++ EDETI RVAAGAIANLAMN E NQELIM QGGI LLS+TAA+AEDPQTLRMVAG
Sbjct: 708 MLLKNTEDETIHRVAAGAIANLAMN-ETNQELIMDQGGIGLLSSTAANAEDPQTLRMVAG 766

Query: 248 AIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI 307
           AIANLCGNDKLQ KLRSEGGI ALLGMVRCGHPDVL+QVARGIANFAKCESRA+TQ    
Sbjct: 767 AIANLCGNDKLQTKLRSEGGIAALLGMVRCGHPDVLAQVARGIANFAKCESRASTQ---- 822

Query: 308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGA 367
                G K G+SLLIEDGAL WIVQNA  E A IRRHIELALCHLAQHE NA+EM+  GA
Sbjct: 823 -----GTKRGKSLLIEDGALSWIVQNAKTETAAIRRHIELALCHLAQHEGNAKEMVKEGA 877

Query: 368 LWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           +WELVRISRDCSREDIRSLAHRTL+SS TF  E+RRLR++ 
Sbjct: 878 MWELVRISRDCSREDIRSLAHRTLTSSPTFLTELRRLRVDI 918

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DV28|ARK1_ORYSJ Armadillo repeat-containing kinesin-like protein 1 OS=Oryza sativa subsp. japonica GN=Os03g0152900 PE=2 SV=2

 Score =  318 bits (815), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 177/377 (46%), Positives = 252/377 (66%), Gaps = 14/377 (3%)

Query: 30  EIHMRKTAEE---ELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVIL 86
           E  + +T EE   +++ L+ R+            E+    + ++ E   ++ LE+EI+ L
Sbjct: 579 EKQLSRTTEEFASQISSLEERIADLISEKELVYEELKSTQEKMQQEMRHRQGLEDEILRL 638

Query: 87  RSQLL-QLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKI 145
           +  L    + E+  +   +  G    +   + K  + R+  + Q++ I+K+FE+VGL  +
Sbjct: 639 KQSLADNCSEESKALCGMVRSGSGLGSVPFMSKSGKSRELLSSQRSNISKIFEEVGLPNV 698

Query: 146 LSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA 205
           L+LL+S++  V+IHAVKVVANLAAE+ NQEKIVE GGL +LL LL + E+ TI RV AGA
Sbjct: 699 LALLKSDELEVQIHAVKVVANLAAEDVNQEKIVEEGGLDALLSLLETSENTTIHRVTAGA 758

Query: 206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE 265
           IANLAMN  +NQ LIM +GG  LL+  A+   DPQTLRMVAGA+ANLCGN+KL + L+ +
Sbjct: 759 IANLAMNG-SNQGLIMNKGGARLLANIASKTNDPQTLRMVAGALANLCGNEKLHVMLKQD 817

Query: 266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG 325
           GGI+ALLGM R GH +V++Q+ARG+ANFAKCESR  +Q         G + GRSLLIE+G
Sbjct: 818 GGIKALLGMFRTGHNEVIAQIARGMANFAKCESRVISQ---------GHRKGRSLLIEEG 868

Query: 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRS 385
            L W+V N++  +A  RRHIELA CHLAQ+E NAR++I  G + EL+RISR+ SR+D R+
Sbjct: 869 VLNWMVANSSAFSASTRRHIELAFCHLAQNEDNARDIILTGGIKELLRISRESSRDDTRN 928

Query: 386 LAHRTLSSSLTFRAEMR 402
           LA + L+S+  F  E++
Sbjct: 929 LAKKALNSNPAFFKEIQ 945

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SV36|ARK1_ARATH Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/409 (44%), Positives = 256/409 (62%), Gaps = 35/409 (8%)

Query: 14   ASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET 73
            ++AAED     K L ++  +     EE N+LK +L + ++       E+  +    +D  
Sbjct: 651  SNAAEDQLRQMKRLISDRQVISQENEEANELKIKLEELSQMYESTVDELQTVKLDYDDLL 710

Query: 74   LQKRKLEEEIVILRSQLL-------QLTFEADQMQKCLERGEF--------------GNT 112
             QK KL EE+  ++ +LL       Q+  E  +++K L   E               G+ 
Sbjct: 711  QQKEKLGEEVRDMKERLLLEEKQRKQMESELSKLKKNLRESENVVEEKRYMKEDLSKGSA 770

Query: 113  FTGLDKHSQ----FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLA 168
             +G    SQ     + S +GQ+A + +L E+VG+ KIL L++SED  V+I AVKVVANLA
Sbjct: 771  ESGAQTGSQRSQGLKKSLSGQRATMARLCEEVGIQKILQLIKSEDLEVQIQAVKVVANLA 830

Query: 169  AEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL 228
            AEEANQ KIVE GG+ +LLML++S ++ TI RVA+GAIANLAMN E +Q+LIM +GG  L
Sbjct: 831  AEEANQVKIVEEGGVEALLMLVQSSQNSTILRVASGAIANLAMN-EKSQDLIMNKGGAQL 889

Query: 229  LSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVAR 288
            L+      +DPQTLRMVAGA+ANLCGN+K    L+ E GI+ LL M + G+ D+++QVAR
Sbjct: 890  LAKMVTKTDDPQTLRMVAGALANLCGNEKFLKLLKEEEGIKGLLTMAQSGNIDIIAQVAR 949

Query: 289  GIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA 348
            G+ANFAKCE+R   Q         G + GRSLL+E+G L W+  N++ ++A  +RHIELA
Sbjct: 950  GMANFAKCETREIMQ---------GRRKGRSLLLEEGVLEWLTSNSHIDSASTQRHIELA 1000

Query: 349  LCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTF 397
            LCHLAQ+E NA +    G++ E+VRIS + SR+DIRSLA + L ++  F
Sbjct: 1001 LCHLAQNEENANDFKRTGSVTEIVRISVESSRDDIRSLAKKILKTNPYF 1049

Involved in the control of root hair tip growth by promoting microtubule depolymerization and limiting the accumulation of endoplasmic microtubules. In vitro, binds to polymerized actin through ARM repeats, and to polymerized tubulin through N-terminal motor domain.

Arabidopsis thaliana (taxid: 3702)

>sp|P39968|VAC8_YEAST Vacuolar protein 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VAC8 PE=1 SV=3

 Score = 65.1 bits (157), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 125/275 (45%), Gaps = 28/275 (10%)

Query: 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
           L  IL LL+S+D  +++ A   + NLA    N+  IVE GGL  L+  +   ++  ++  
Sbjct: 87  LEPILILLQSQDPQIQVAACAALGNLAVNNENKLLIVEMGGLEPLINQMMG-DNVEVQCN 145

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           A G I NLA   + N+  I   G +  L T  A ++  +  R   GA+ N+  +++ + +
Sbjct: 146 AVGCITNLATR-DDNKHKIATSGALIPL-TKLAKSKHIRVQRNATGALLNMTHSEENRKE 203

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR----AATQVRF----------- 306
           L + G +  L+ ++    PDV       ++N A  E+     A T+ R            
Sbjct: 204 LVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSP 263

Query: 307 ---IRCTAT----GVKSGRSL---LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356
              ++C AT     + S  S    ++  G LP +V+   +++ P+       + +++ H 
Sbjct: 264 SSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVKLIQSDSIPLVLASVACIRNISIHP 323

Query: 357 VNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391
           +N   ++  G L  LVR+      E+I+  A  TL
Sbjct: 324 LNEGLIVDAGFLKPLVRLLDYKDSEEIQCHAVSTL 358

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6FJV1|VAC8_CANGA Vacuolar protein 8 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=VAC8 PE=3 SV=3

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 123/275 (44%), Gaps = 28/275 (10%)

Query: 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
           L  IL LL+S+D  +++ A   + NLA    N+  IV+ GGL  L+  +     E ++  
Sbjct: 87  LEPILILLQSQDPQIQVAACAALGNLAVNNENKLLIVDMGGLEPLINQMMGTNVE-VQCN 145

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           A G I NLA   + N+  I   G +  L T  A ++  +  R   GA+ N+  +++ + +
Sbjct: 146 AVGCITNLATR-DDNKHKIATSGALVPL-TKLAKSKHIRVQRNATGALLNMTHSEENRRE 203

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR----AATQVRF----------- 306
           L + G +  L+ ++    PDV       ++N A  E+     A T+ R            
Sbjct: 204 LVNAGAVPVLVSLLSSNDPDVQYYCTTALSNIAVDEANRKKLAQTEPRLVSKLVSLMDSP 263

Query: 307 ---IRCTAT----GVKSGRSL---LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356
              ++C AT     + S  S    ++  G LP +V    +E+ P+       + +++ H 
Sbjct: 264 SSRVKCQATLALRNLASDTSYQLEIVRAGGLPHLVNLIQSESVPLILASVACIRNISIHP 323

Query: 357 VNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391
           +N   ++  G L  LV++      E+I+  A  TL
Sbjct: 324 LNEGLIVDAGFLPPLVKLLDYRDSEEIQCHAVSTL 358

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6CX49|VAC8_KLULA Vacuolar protein 8 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=VAC8 PE=3 SV=3

 Score = 62.0 bits (149), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 126/289 (43%), Gaps = 32/289 (11%)

Query: 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
           L  IL LL + D  +RI +   + NLA    N+  IVE GGL  L+  ++S ++  ++  
Sbjct: 89  LEPILMLLTNPDPQIRIASCAALGNLAVNNENKLLIVEMGGLEPLIEQMKS-DNVEVQCN 147

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           A G I NLA   + + ++ +AQ G  +  T  A + + +  R   GA+ N+  + + + +
Sbjct: 148 AVGCITNLA--TQDDNKIEIAQSGALVPLTKLARSSNIRVQRNATGALLNMTHSGENRKE 205

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR-----------AATQVRFIRCT 310
           L   G +  L+ ++     DV       ++N A  ES                V  +  T
Sbjct: 206 LVDAGAVPVLVSLLSSMDADVQYYCTTALSNIAVDESNRRYLSKHAPKLVTKLVSLMNST 265

Query: 311 ATGVKSGRSL--------------LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE 356
           +  VK   +L              ++  G LP +VQ   +++ P+       + +++ H 
Sbjct: 266 SPRVKCQATLALRNLASDTNYQLEIVRAGGLPDLVQLIQSDSLPLVLASVACIRNISIHP 325

Query: 357 VNAREMISGGALWELVRISRDCSREDIRSLAHRTL----SSSLTFRAEM 401
           +N   ++  G L  LV++      E+I+  A  TL    +SS   RAE 
Sbjct: 326 LNEGLIVDAGFLPPLVKLLDYQESEEIQCHAVSTLRNLAASSEKNRAEF 374

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6C5Y8|VAC8_YARLI Vacuolar protein 8 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=VAC8 PE=3 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 120/275 (43%), Gaps = 26/275 (9%)

Query: 136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFED 195
           + E  G   ++  + S +  V+ +AV  + NLA  EAN+ KI  +G L  L  L +S +D
Sbjct: 145 IVEMGGFEPLIRQMMSPNVEVQCNAVGCITNLATHEANKSKIARSGALLPLTKLAKS-KD 203

Query: 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN 255
             ++R A GA+ N+  + +  QEL+ A G I +L +  + + DP        A++N+  +
Sbjct: 204 MRVQRNATGALLNMTHSDQNRQELVNA-GAIPILVSLLS-SRDPDVQYYSTTALSNIAVD 261

Query: 256 DKLQMKLRSEGG--IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG 313
           +  + KL S     +  L+ ++  G P V  Q A  + N A   S +  Q+  ++     
Sbjct: 262 ESNRKKLSSSEPRLVEHLIKLMDSGSPRVQCQAALALRNLA---SDSDYQLEIVKAN--- 315

Query: 314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVR 373
                        LP +     +   P+       + +++ H +N   +I  G L  LV 
Sbjct: 316 ------------GLPHLFNLFQSTHTPLVLAAVACIRNISIHPLNETPIIEAGFLKTLVE 363

Query: 374 ISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           +      E+I+     T+S+     A   R ++E 
Sbjct: 364 LLGASDNEEIQC---HTISTLRNLAASSERNKLEI 395

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q7RXW1|VAC8_NEUCR Vacuolar protein 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=vac-8 PE=3 SV=3

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 114/257 (44%), Gaps = 31/257 (12%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
           GL  ++  + S +  V+ +AV  + NLA  E N+ KI  +G L  L  L +S  D  ++R
Sbjct: 148 GLAPLIRQMMSPNVEVQCNAVGCITNLATHEDNKAKIARSGALGPLTRLAKS-RDMRVQR 206

Query: 201 VAAGAIANLAMNAEANQELIMAQGGIS----LLSTTAADAEDPQTLRMVAGAIANLC--G 254
            A GA+ N+  + E  Q+L+ A G I     LLS+T  D +          A++N+    
Sbjct: 207 NATGALLNMTHSDENRQQLVNA-GAIPVLVQLLSSTDVDVQ-----YYCTTALSNIAVDA 260

Query: 255 NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGV 314
           N++ ++       +++L+ ++    P V  Q A  + N A  E     Q+  +R +  G 
Sbjct: 261 NNRRKLAQTEPRLVQSLVNLMDSSSPKVQCQAALALRNLASDEKY---QLEIVRASGLG- 316

Query: 315 KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRI 374
                 L++   LP I+      A    R+I +       H +N   +I  G L  LV +
Sbjct: 317 --PLLRLLQSSYLPLIL-----SAVACIRNISI-------HPMNESPIIEAGFLKPLVDL 362

Query: 375 SRDCSREDIRSLAHRTL 391
                 E+I+  A  TL
Sbjct: 363 LGSTDNEEIQCHAISTL 379

Functions in both vacuole inheritance and protein targeting from the cytoplasm to vacuole.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
255541342	896	Kinesin-II 85 kDa subunit, putative [Ric	0.946	0.430	0.771	1e-177
224067773	907	predicted protein [Populus trichocarpa]	0.933	0.420	0.783	1e-175
224130014	905	predicted protein [Populus trichocarpa]	0.938	0.423	0.781	1e-174
359489421	895	PREDICTED: armadillo repeat-containing k	0.958	0.436	0.776	1e-171
30678214	894	armadillo repeat-containing kinesin-like	0.946	0.431	0.745	1e-168
356532089	889	PREDICTED: armadillo repeat-containing k	0.960	0.440	0.720	1e-167
297848308	893	armadillo/beta-catenin repeat family pro	0.946	0.432	0.745	1e-167
356568290	887	PREDICTED: armadillo repeat-containing k	0.946	0.435	0.727	1e-167
238478319	915	armadillo repeat-containing kinesin-like	0.946	0.421	0.707	1e-164
357506879	971	Armadillo repeat-containing kinesin-like	0.948	0.398	0.688	1e-164

>gi|255541342|ref|XP_002511735.1| Kinesin-II 85 kDa subunit, putative [Ricinus communis] gi|223548915|gb|EEF50404.1| Kinesin-II 85 kDa subunit, putative [Ricinus communis]

 Score =  626 bits (1614), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 310/402 (77%), Positives = 357/402 (88%), Gaps = 16/402 (3%)

Query: 12  PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71
           P ASA+++IA+I++LLQNEI +R  AEEE+NKLKS+L  + +S +  D+E+ KLHKTLED
Sbjct: 504 PSASASDEIADIKRLLQNEIQLRTAAEEEVNKLKSQLENFMQSMAGGDSEIVKLHKTLED 563

Query: 72  ETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDS 125
           E  +K+KLEEE++IL+SQLLQ T E++Q ++ L+RG  GN  +GLD      +H QF+DS
Sbjct: 564 EAHKKKKLEEEVMILQSQLLQFTLESEQKRRVLDRGGSGNANSGLDSFVSQVRHPQFKDS 623

Query: 126 GNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSS 185
            NGQKAP++ LFEQVGL KILSLLES+DA VRIHAVKVVANLAAEEANQ++IVEAGGL+S
Sbjct: 624 VNGQKAPMSSLFEQVGLQKILSLLESDDATVRIHAVKVVANLAAEEANQQRIVEAGGLTS 683

Query: 186 LLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMV 245
           LLMLLRSFEDET+RRVAAGAIANLAMN EANQELIMAQGGISLLS TAADAEDPQTLRMV
Sbjct: 684 LLMLLRSFEDETVRRVAAGAIANLAMN-EANQELIMAQGGISLLSMTAADAEDPQTLRMV 742

Query: 246 AGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
           AGAIANLCGNDKLQM+LRSEGGI+ALLGMVRCGHPDVLSQVARGIANFAKCESRA+TQ  
Sbjct: 743 AGAIANLCGNDKLQMRLRSEGGIKALLGMVRCGHPDVLSQVARGIANFAKCESRASTQ-- 800

Query: 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISG 365
                  G+K G+SLLIEDGALPWIVQNAN+E+APIRRHIELA+CHLAQHEVNA++MISG
Sbjct: 801 -------GIKGGKSLLIEDGALPWIVQNANDESAPIRRHIELAICHLAQHEVNAKDMISG 853

Query: 366 GALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           GALWELVRISRDCSREDIRSLAHRTL++S TF+AEMRRLRIE
Sbjct: 854 GALWELVRISRDCSREDIRSLAHRTLNASPTFKAEMRRLRIE 895

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067773|ref|XP_002302540.1| predicted protein [Populus trichocarpa] gi|222844266|gb|EEE81813.1| predicted protein [Populus trichocarpa]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 311/397 (78%), Positives = 349/397 (87%), Gaps = 16/397 (4%)

Query: 17  AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQK 76
           +E+++++RKLLQNEI +RK AE+E+NKLK +  Q+ + G+  D E+ +LHK LEDE  +K
Sbjct: 520 SEEVSDLRKLLQNEIQLRKAAEDEINKLKGQYEQFMQPGAGGDTEIIRLHKILEDEAYKK 579

Query: 77  RKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDSGNGQK 130
           RKLEEE+VIL+SQLLQLTFEADQ ++ LER    N F+G+D      ++SQF+++ NGQK
Sbjct: 580 RKLEEEVVILQSQLLQLTFEADQAKRYLERSGSTNGFSGVDSLMSQARNSQFKETMNGQK 639

Query: 131 APITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL 190
           AP   LFE VGL KILSLLESEDANVRIHAVKVVANLAAEEANQE+IVE+GGL+SLLM+L
Sbjct: 640 APTASLFEHVGLQKILSLLESEDANVRIHAVKVVANLAAEEANQERIVESGGLTSLLMVL 699

Query: 191 RSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250
           RSFEDETIRRVAAGAIANLAMN EANQELIM QGGISLLS TAADAEDPQTLRMV+GAIA
Sbjct: 700 RSFEDETIRRVAAGAIANLAMN-EANQELIMVQGGISLLSMTAADAEDPQTLRMVSGAIA 758

Query: 251 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCT 310
           NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA+TQ       
Sbjct: 759 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRASTQ------- 811

Query: 311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWE 370
             G+KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ EVNA+EMISGGALWE
Sbjct: 812 --GLKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQQEVNAKEMISGGALWE 869

Query: 371 LVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           LVRISR CSREDIR+LAHRTL+SS TFR+EMRRLRIE
Sbjct: 870 LVRISRYCSREDIRALAHRTLNSSSTFRSEMRRLRIE 906

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130014|ref|XP_002320731.1| predicted protein [Populus trichocarpa] gi|222861504|gb|EEE99046.1| predicted protein [Populus trichocarpa]

 Score =  619 bits (1595), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 312/399 (78%), Positives = 346/399 (86%), Gaps = 16/399 (4%)

Query: 15  SAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETL 74
           S +E+++E+RKLLQNEI +RK AE+ELNKLKS+  Q+ + G+  D E+ +LH+ LEDE  
Sbjct: 516 SVSEEVSELRKLLQNEIQLRKAAEDELNKLKSQFEQFMQPGAGGDTEIVRLHRILEDEAY 575

Query: 75  QKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDSGNG 128
           +K+ LEEE+ IL+SQLLQLTFEA Q ++ LER    N F G+D      +H QF+++ NG
Sbjct: 576 KKKSLEEEVAILQSQLLQLTFEAGQAKESLERSGSANGFNGVDPRMSQVRHLQFKETVNG 635

Query: 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM 188
           QKAPI  L+E VGL KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVE+GGL+SLLM
Sbjct: 636 QKAPIAPLYEHVGLQKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVESGGLTSLLM 695

Query: 189 LLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA 248
           LLRSFEDETIRRVAAGAIANLAMN EANQELIM QGGISLLS TAADAEDPQTLRMVAGA
Sbjct: 696 LLRSFEDETIRRVAAGAIANLAMN-EANQELIMVQGGISLLSMTAADAEDPQTLRMVAGA 754

Query: 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
           IANLCGNDKLQMKLRSEGGIRALLGM RCGHPDVLSQVARGIANFAKCESRA+TQ     
Sbjct: 755 IANLCGNDKLQMKLRSEGGIRALLGMERCGHPDVLSQVARGIANFAKCESRASTQ----- 809

Query: 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL 368
               G+KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ EVNA+EMISGGAL
Sbjct: 810 ----GLKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQQEVNAKEMISGGAL 865

Query: 369 WELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           WELVRISRDCSREDIR+LA RTL+SS TFR+EMRRLRIE
Sbjct: 866 WELVRISRDCSREDIRTLARRTLNSSSTFRSEMRRLRIE 904

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489421|ref|XP_002273752.2| PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Vitis vinifera] gi|296089163|emb|CBI38866.3| unnamed protein product [Vitis vinifera]

 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 316/407 (77%), Positives = 355/407 (87%), Gaps = 16/407 (3%)

Query: 8   TGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHK 67
            G  PG S AE++AE++KLLQNEIH+RK AEEE++ LK+RLGQ+T+  +  ++E+ KL K
Sbjct: 499 NGEGPGVSGAEELAEVKKLLQNEIHLRKAAEEEVDYLKNRLGQFTQPEAGGNSEILKLRK 558

Query: 68  TLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDK------HSQ 121
           +LEDE  +K+KLEEEI IL+SQLLQLTFEAD+M++CLERG  GN FTGLD       H  
Sbjct: 559 SLEDEAHKKKKLEEEITILQSQLLQLTFEADRMRRCLERGGSGNAFTGLDSLMSQVGHLH 618

Query: 122 FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAG 181
            +D+GNGQ+A I  L EQVGL K+LSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAG
Sbjct: 619 LKDAGNGQRASIATLSEQVGLQKVLSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAG 678

Query: 182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQT 241
           GLSSLLMLLR FEDET+RRVAAGAIANLAMN EANQELIM +GGISLLS TAA+AEDPQT
Sbjct: 679 GLSSLLMLLRRFEDETVRRVAAGAIANLAMN-EANQELIMVEGGISLLSMTAAEAEDPQT 737

Query: 242 LRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA 301
           LRMVAGAIANLCGNDKLQMKLRSEGGI+ALLG VRCGHPDVLSQVARGIANFAKCESRA+
Sbjct: 738 LRMVAGAIANLCGNDKLQMKLRSEGGIKALLGTVRCGHPDVLSQVARGIANFAKCESRAS 797

Query: 302 TQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNARE 361
           +Q         G K+GRS LIEDGAL WIVQNANNEA+PIRRHIELALCHLAQHEVNA++
Sbjct: 798 SQ---------GTKTGRSFLIEDGALQWIVQNANNEASPIRRHIELALCHLAQHEVNAKD 848

Query: 362 MISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           MISGGALWELVRISRDCSREDIR+LAHRTL+SS TFR+E+RRLRIEF
Sbjct: 849 MISGGALWELVRISRDCSREDIRNLAHRTLTSSPTFRSELRRLRIEF 895

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678214|ref|NP_171697.3| armadillo repeat-containing kinesin-like protein 2 [Arabidopsis thaliana] gi|193806751|sp|Q9LPC6.2|ARK2_ARATH RecName: Full=Armadillo repeat-containing kinesin-like protein 2 gi|162958325|dbj|BAF95586.1| armadillo repeat kinesin2 [Arabidopsis thaliana] gi|332189236|gb|AEE27357.1| armadillo repeat-containing kinesin-like protein 2 [Arabidopsis thaliana]

 Score =  596 bits (1537), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 298/400 (74%), Positives = 344/400 (86%), Gaps = 14/400 (3%)

Query: 13  GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDE 72
           G   A +   +++ L+NE+ +RK+AEEE++K+KS+    T SG   DA +++L K LEDE
Sbjct: 505 GVVTASEFTRLKESLENEMKLRKSAEEEVSKVKSQSTLKTRSGEGEDAGITRLQKLLEDE 564

Query: 73  TLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD----KHSQFRDSGNG 128
            LQK+KLEEE+ ILRSQL+QLTFEADQM++CL+RG  GN+++G D    +HSQ R+S NG
Sbjct: 565 ALQKKKLEEEVTILRSQLVQLTFEADQMRRCLDRGAPGNSYSGTDSLPSRHSQARESVNG 624

Query: 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM 188
           QKAP   L EQVGL KIL LLES+DAN+RIHAVKVVANLAAEEANQEKIVEAGGL+SLLM
Sbjct: 625 QKAPFATLCEQVGLQKILQLLESDDANIRIHAVKVVANLAAEEANQEKIVEAGGLTSLLM 684

Query: 189 LLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA 248
           LLRS+EDET+RRVAAGAIANLAMN E +Q+LI+ QGGISLLS TAADAEDPQTLRMVAGA
Sbjct: 685 LLRSYEDETVRRVAAGAIANLAMN-EVSQQLIVDQGGISLLSLTAADAEDPQTLRMVAGA 743

Query: 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
           IANLCGNDKLQ +L S+GGI+ALLGMVRCGHPDVL+QVARGIANFAKCESRA TQ     
Sbjct: 744 IANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRATTQ----- 798

Query: 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL 368
               GVKSGRSLLIEDGALPWIVQ+AN+EAAPIRRHIELALCHLAQHEVNA+EMISGGAL
Sbjct: 799 ----GVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEVNAKEMISGGAL 854

Query: 369 WELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           WELVRIS++CSREDIRSLAHRTLSSS  FR+E+RRL I+F
Sbjct: 855 WELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQF 894

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532089|ref|XP_003534606.1| PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Glycine max]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 294/408 (72%), Positives = 347/408 (85%), Gaps = 16/408 (3%)

Query: 7   DTGFEPGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLH 66
           D G  P +S+ +++AE++ LL+ E + RK AEEE+  LKS+LG++  S +  D E+ KL 
Sbjct: 492 DNGEGPASSSTDEVAEVKMLLETERNRRKAAEEEVGHLKSQLGKHMPSEAGGDVEIIKLR 551

Query: 67  KTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHS 120
             LEDE  QK++LEEEI+ILRSQLLQL FEADQM++CLE G  G+TF+ LD      +HS
Sbjct: 552 NILEDEANQKKRLEEEIIILRSQLLQLNFEADQMRRCLENGSSGSTFSALDSSTTQVRHS 611

Query: 121 QFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEA 180
           QF+D  NGQK+ +  LFEQVGL KILSLLES+DANVRIHAVKVVANLAAEEANQ++IVEA
Sbjct: 612 QFKDVANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEA 671

Query: 181 GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQ 240
           GGL+SLLMLLR +EDET+RRVAAGAIANLAMN EANQELIMA+GGI+LLS TA+DAEDPQ
Sbjct: 672 GGLTSLLMLLRRYEDETVRRVAAGAIANLAMN-EANQELIMAEGGITLLSMTASDAEDPQ 730

Query: 241 TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300
           TLRMVAGAIANLCGND++ M LRS+GGI+ALLG+VRCGHPDVLSQVARGIANFAKCESRA
Sbjct: 731 TLRMVAGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRA 790

Query: 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR 360
           + Q         G+KSGRS LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN++
Sbjct: 791 SNQ---------GIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNSK 841

Query: 361 EMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           ++I GGALWELVRIS+DCSREDIR+LA RTLSS  TF++E+RRLRI++
Sbjct: 842 DLIGGGALWELVRISQDCSREDIRNLARRTLSSVSTFKSELRRLRIDY 889

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848308|ref|XP_002892035.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297337877|gb|EFH68294.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  594 bits (1532), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 298/400 (74%), Positives = 342/400 (85%), Gaps = 14/400 (3%)

Query: 13  GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDE 72
           G   A +   +++ L+NE+ +RK AEEE++K+KS+    T SG   DA +S+L K LEDE
Sbjct: 504 GVVTASEFTRLKESLENEMKLRKAAEEEVSKVKSQSTLKTRSGEGEDAGISRLQKLLEDE 563

Query: 73  TLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD----KHSQFRDSGNG 128
            LQK+KLEEE+ ILRSQL+QLTFEADQM++CL+RG  GN+++G D    +HS  R+S NG
Sbjct: 564 ALQKKKLEEEVTILRSQLVQLTFEADQMRRCLDRGAPGNSYSGTDSLPSRHSHARESVNG 623

Query: 129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM 188
           QKAP   L EQVGL KIL LLES+DAN+RIHAVKVVANLAAEEANQEKIVEAGGL+SLLM
Sbjct: 624 QKAPFATLCEQVGLQKILQLLESDDANIRIHAVKVVANLAAEEANQEKIVEAGGLTSLLM 683

Query: 189 LLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA 248
           LLRS+EDET+RRVAAGAIANLAMN E +Q+LI+ QGGISLLS TAADAEDPQTLRMVAGA
Sbjct: 684 LLRSYEDETVRRVAAGAIANLAMN-EVSQQLIVDQGGISLLSLTAADAEDPQTLRMVAGA 742

Query: 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
           IANLCGNDKLQ +L S+GGI+ALLGMVRCGHPDVL+QVARGIANFAKCESRA TQ     
Sbjct: 743 IANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVARGIANFAKCESRATTQ----- 797

Query: 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL 368
               GVKSGRSLLIEDGALPWIVQ+AN+EAAPIRRHIELALCHLAQHEVNA+EMISGGAL
Sbjct: 798 ----GVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIELALCHLAQHEVNAKEMISGGAL 853

Query: 369 WELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           WELVRIS++CSREDIRSLAHRTLSSS  FR+E+RRL I+F
Sbjct: 854 WELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQF 893

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568290|ref|XP_003552346.1| PREDICTED: armadillo repeat-containing kinesin-like protein 2-like [Glycine max]

 Score =  592 bits (1527), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 293/403 (72%), Positives = 347/403 (86%), Gaps = 17/403 (4%)

Query: 12  PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71
           P +S+ +D+AE++ LL+ E + RK AEEE+  LKS+LG++T++ +  D E+ KL   LED
Sbjct: 496 PASSSTDDVAEVKMLLETERNRRKAAEEEVEHLKSQLGKHTQAEAGGDVEIIKLRNLLED 555

Query: 72  ETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDS 125
           E  QK++LEEEI++LRSQLLQL FEADQM++CL+ G  G+T++ +D      +HSQF+D 
Sbjct: 556 EANQKKRLEEEIILLRSQLLQLNFEADQMRRCLD-GSSGSTYSAMDSSTTQVRHSQFKDV 614

Query: 126 GNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSS 185
            NGQK+ +  LFEQVGL KILSLLES+DANVRIHAVKVVANLAAEEANQ++IVEAGGL+S
Sbjct: 615 ANGQKSSVATLFEQVGLQKILSLLESDDANVRIHAVKVVANLAAEEANQKRIVEAGGLTS 674

Query: 186 LLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMV 245
           LLMLLR +EDET+RRVAAGAIANLAMN EANQELIMA+GGI+LLS TA+DAEDPQTLRMV
Sbjct: 675 LLMLLRRYEDETVRRVAAGAIANLAMN-EANQELIMAEGGITLLSMTASDAEDPQTLRMV 733

Query: 246 AGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
           AGAIANLCGND++ M LRS+GGI+ALLG+VRCGHPDVLSQVARGIANFAKCESRA+ Q  
Sbjct: 734 AGAIANLCGNDRILMTLRSQGGIKALLGIVRCGHPDVLSQVARGIANFAKCESRASNQ-- 791

Query: 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISG 365
                  G+KSGRS LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA+++ISG
Sbjct: 792 -------GIKSGRSFLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAKDLISG 844

Query: 366 GALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIEF 408
           GALWELVRISRDCSREDIR+LA RTLSS  TF+ E+RRLRI+F
Sbjct: 845 GALWELVRISRDCSREDIRNLARRTLSSVSTFKLELRRLRIDF 887

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478319|ref|NP_001154301.1| armadillo repeat-containing kinesin-like protein 2 [Arabidopsis thaliana] gi|332189238|gb|AEE27359.1| armadillo repeat-containing kinesin-like protein 2 [Arabidopsis thaliana]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 298/421 (70%), Positives = 344/421 (81%), Gaps = 35/421 (8%)

Query: 13  GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDE 72
           G   A +   +++ L+NE+ +RK+AEEE++K+KS+    T SG   DA +++L K LEDE
Sbjct: 505 GVVTASEFTRLKESLENEMKLRKSAEEEVSKVKSQSTLKTRSGEGEDAGITRLQKLLEDE 564

Query: 73  TLQKRKLEEEIVILRSQLLQLTFEADQ---------------------MQKCLERGEFGN 111
            LQK+KLEEE+ ILRSQL+QLTFEADQ                     M++CL+RG  GN
Sbjct: 565 ALQKKKLEEEVTILRSQLVQLTFEADQISLHCMPSLKILLNTHVLFFQMRRCLDRGAPGN 624

Query: 112 TFTGLD----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANL 167
           +++G D    +HSQ R+S NGQKAP   L EQVGL KIL LLES+DAN+RIHAVKVVANL
Sbjct: 625 SYSGTDSLPSRHSQARESVNGQKAPFATLCEQVGLQKILQLLESDDANIRIHAVKVVANL 684

Query: 168 AAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS 227
           AAEEANQEKIVEAGGL+SLLMLLRS+EDET+RRVAAGAIANLAMN E +Q+LI+ QGGIS
Sbjct: 685 AAEEANQEKIVEAGGLTSLLMLLRSYEDETVRRVAAGAIANLAMN-EVSQQLIVDQGGIS 743

Query: 228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA 287
           LLS TAADAEDPQTLRMVAGAIANLCGNDKLQ +L S+GGI+ALLGMVRCGHPDVL+QVA
Sbjct: 744 LLSLTAADAEDPQTLRMVAGAIANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVA 803

Query: 288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIEL 347
           RGIANFAKCESRA TQ         GVKSGRSLLIEDGALPWIVQ+AN+EAAPIRRHIEL
Sbjct: 804 RGIANFAKCESRATTQ---------GVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIEL 854

Query: 348 ALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           ALCHLAQHEVNA+EMISGGALWELVRIS++CSREDIRSLAHRTLSSS  FR+E+RRL I+
Sbjct: 855 ALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQ 914

Query: 408 F 408
           F
Sbjct: 915 F 915

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506879|ref|XP_003623728.1| Armadillo repeat-containing kinesin-like protein [Medicago truncatula] gi|355498743|gb|AES79946.1| Armadillo repeat-containing kinesin-like protein [Medicago truncatula]

 Score =  583 bits (1503), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 294/427 (68%), Positives = 344/427 (80%), Gaps = 40/427 (9%)

Query: 12  PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLED 71
           P  S+A+++AEI+ LL+ E + RK AEEEL  LK +LG+YT+     D+E++KL   LED
Sbjct: 555 PAQSSADEVAEIKMLLETESNRRKAAEEELTHLKRQLGKYTKPEEGEDSEITKLRNLLED 614

Query: 72  ETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD------KHSQFRDS 125
           E  QK+KLEEEI+ILRSQLLQ  FE +QM++CLE G  G+TF+  D      +HSQF+D+
Sbjct: 615 EAHQKKKLEEEIIILRSQLLQANFETEQMRRCLEGGSSGSTFSATDSSTTQVRHSQFKDA 674

Query: 126 GNGQKAPITKLFEQ------------------------VGLHKILSLLESEDANVRIHAV 161
            NGQK+ +  LFEQ                        +GL KILSLLES+DANVRIHAV
Sbjct: 675 ANGQKSSVATLFEQGTSCLSYALITQVFSILDSSQPQKLGLQKILSLLESDDANVRIHAV 734

Query: 162 KVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM 221
           KVVANLAAEEANQ++IVE+GGL+SLLMLLR +EDET+RRVAAGAIANLAMN EANQELIM
Sbjct: 735 KVVANLAAEEANQKRIVESGGLTSLLMLLRRYEDETVRRVAAGAIANLAMN-EANQELIM 793

Query: 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPD 281
           A+GGI+LLS  A+DAEDPQTLRMVAGAIANLCGNDK+ M LRS+GGI+ALLG+VRCGHPD
Sbjct: 794 AEGGITLLSMAASDAEDPQTLRMVAGAIANLCGNDKILMTLRSQGGIKALLGIVRCGHPD 853

Query: 282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI 341
           VLSQVARGIANFAKCESRA+ Q         GVK+GRS+LIEDGALPWIVQNANNEAAPI
Sbjct: 854 VLSQVARGIANFAKCESRASNQ---------GVKTGRSILIEDGALPWIVQNANNEAAPI 904

Query: 342 RRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEM 401
           RRHIELALCHLAQHE NA++MISGGALWELVRISRDCSREDIRSLAHRTLSS   F++E+
Sbjct: 905 RRHIELALCHLAQHEANAKDMISGGALWELVRISRDCSREDIRSLAHRTLSSITPFKSEL 964

Query: 402 RRLRIEF 408
           RRLR+E+
Sbjct: 965 RRLRVEY 971

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	408
TAIR|locus:2025497	915	ARK2 "armadillo repeat kinesin	0.946	0.421	0.657	1.3e-132
TAIR|locus:2055033	930	ARABIDILLO-1 "AT2G44900" [Arab	0.642	0.281	0.244	1.7e-06
TAIR|locus:2103351	928	ARABIDILLO-2 "AT3G60350" [Arab	0.644	0.283	0.228	3.5e-05
SGD|S000000739	578	VAC8 "Phosphorylated and palmi	0.426	0.301	0.243	0.00029

TAIR|locus:2025497 ARK2 "armadillo repeat kinesin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1300 (462.7 bits), Expect = 1.3e-132, P = 1.3e-132
 Identities = 277/421 (65%), Positives = 321/421 (76%)

Query:    13 GASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDE 72
             G   A +   +++ L+NE+ +RK+AEEE++K+KS+    T SG   DA +++L K LEDE
Sbjct:   505 GVVTASEFTRLKESLENEMKLRKSAEEEVSKVKSQSTLKTRSGEGEDAGITRLQKLLEDE 564

Query:    73 TLQKRKLEEEIVILRSQLLQLTFEADQ---------------------MQKCLERGEFGN 111
              LQK+KLEEE+ ILRSQL+QLTFEADQ                     M++CL+RG  GN
Sbjct:   565 ALQKKKLEEEVTILRSQLVQLTFEADQISLHCMPSLKILLNTHVLFFQMRRCLDRGAPGN 624

Query:   112 TFTGLD----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANL 167
             +++G D    +HSQ R+S NGQKAP   L EQVGL KIL LLES+DAN+RIHAVKVVANL
Sbjct:   625 SYSGTDSLPSRHSQARESVNGQKAPFATLCEQVGLQKILQLLESDDANIRIHAVKVVANL 684

Query:   168 AAEEANQEKIVEAGGXXXXXXXXXXFEDETIRRVXXXXXXXXXXXXXXXQELIMAQGGIS 227
             AAEEANQEKIVEAGG          +EDET+RRV               Q+LI+ QGGIS
Sbjct:   685 AAEEANQEKIVEAGGLTSLLMLLRSYEDETVRRVAAGAIANLAMNEVS-QQLIVDQGGIS 743

Query:   228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA 287
             LLS TAADAEDPQTLRMVAGAIANLCGNDKLQ +L S+GGI+ALLGMVRCGHPDVL+QVA
Sbjct:   744 LLSLTAADAEDPQTLRMVAGAIANLCGNDKLQARLWSDGGIKALLGMVRCGHPDVLAQVA 803

Query:   288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIEL 347
             RGIANFAKCESRA TQ         GVKSGRSLLIEDGALPWIVQ+AN+EAAPIRRHIEL
Sbjct:   804 RGIANFAKCESRATTQ---------GVKSGRSLLIEDGALPWIVQHANDEAAPIRRHIEL 854

Query:   348 ALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
             ALCHLAQHEVNA+EMISGGALWELVRIS++CSREDIRSLAHRTLSSS  FR+E+RRL I+
Sbjct:   855 ALCHLAQHEVNAKEMISGGALWELVRISKECSREDIRSLAHRTLSSSPVFRSEIRRLGIQ 914

Query:   408 F 408
             F
Sbjct:   915 F 915

GO:0003777 "microtubule motor activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0048364 "root development" evidence=IMP

TAIR|locus:2055033 ARABIDILLO-1 "AT2G44900" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 73/299 (24%), Positives = 118/299 (39%)

Query:    91 LQLTFEADQMQKCLERGEFG-NTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLL 149
             L L       +   ER   G  TF  +D  +   D G  +      + +  G+  +L L 
Sbjct:   393 LLLNLMQSSQEDVQERSATGLATFVVVDDENASIDCGRAEA-----VMKDGGIRLLLELA 447

Query:   150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGXXXXXXXXXXFEDETIRRVXXXXXXXX 209
             +S    ++  A K +ANL+      + + E GG             +++ R+        
Sbjct:   448 KSWREGLQSEAAKAIANLSVNANIAKSVAEEGGIKILAGLA-----KSMNRLVAEEAAGG 502

Query:   210 XXXXXXXQE---LIMAQGGISLLSTTAADAED--PQTLRMVAGAIANLCGNDKLQMKLRS 264
                    +E    I   GG+  L        +     L   AGA+ANL  +DK  M++  
Sbjct:   503 LWNLSVGEEHKNAIAQAGGVKALVDLIFRWPNGCDGVLERAAGALANLAADDKCSMEVAK 562

Query:   265 EGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI- 322
              GG+ AL+ + R C +  V  Q AR +AN A                A G  +  +  + 
Sbjct:   563 AGGVHALVMLARNCKYEGVQEQAARALANLA----------------AHGDSNNNNAAVG 606

Query:   323 -EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMIS-GGALWELVRISRDCS 379
              E GAL  +VQ   +    +R+    AL +L+  + N RE IS  G +  LV +++ CS
Sbjct:   607 QEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKN-RESISVAGGVEALVALAQSCS 664

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0048527 "lateral root development" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2103351 ARABIDILLO-2 "AT3G60350" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 3.5e-05, P = 3.5e-05
 Identities = 68/298 (22%), Positives = 115/298 (38%)

Query:    91 LQLTFEADQMQKCLERGEFG-NTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLL 149
             L L+      +   ER   G  TF  +D  +   D G  +      +    G+  +L L 
Sbjct:   384 LLLSLMQSAQEDVQERAATGLATFIVVDDENASIDCGRAEA-----VMRDGGIRLLLELA 438

Query:   150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGXXXXXXXXXXFEDETIRRVXXXXXXXX 209
             +S    ++  A K +ANL+      + + E GG             +++ R+        
Sbjct:   439 KSWREGLQSEAAKAIANLSVNAKVAKAVAEEGGISVLADLA-----KSMNRLVAEEAAGG 493

Query:   210 XXXXXXXQE---LIMAQGGISLLSTTAADAED--PQTLRMVAGAIANLCGNDKLQMKLRS 264
                    +E    I   GG++ L              L   AGA+ANL  +DK  M++  
Sbjct:   494 LWNLSVGEEHKNAIAQAGGVNALVDLIFRWPHGCDGVLERAAGALANLAADDKCSMEVAR 553

Query:   265 EGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI- 322
              GG+ AL+ + R C +     Q AR +AN A                A G  +G +  + 
Sbjct:   554 AGGVHALVMLARNCKYEGAQEQAARALANLA----------------AHGDSNGNNAAVG 597

Query:   323 -EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS 379
              E GAL  +VQ   +    +++    AL +LA  + N   + + G +  LV +++  S
Sbjct:   598 QEAGALEALVQLTQSPHEGVKQEAAGALWNLAFDDKNRESIAAFGGVEALVALAKSSS 655

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0048527 "lateral root development" evidence=IGI;IMP

SGD|S000000739 VAC8 "Phosphorylated and palmitoylated vacuolar membrane protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 105 (42.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
 Identities = 45/185 (24%), Positives = 75/185 (40%)

Query:   131 APIT-KLFEQVG---LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGXXXX 186
             A IT K   QV    L  IL LL+S+D  +++ A   + NLA    N+  IVE GG    
Sbjct:    72 AEITEKYVRQVSREVLEPILILLQSQDPQIQVAACAALGNLAVNNENKLLIVEMGGLEPL 131

Query:   187 XXXXXXFEDETIRRVXXXXXXXXXXXXXXXQELIMAQGGISLLSTTAADAEDPQTLRMVA 246
                     D    +                +  I   G +  L T  A ++  +  R   
Sbjct:   132 INQMMG--DNVEVQCNAVGCITNLATRDDNKHKIATSGALIPL-TKLAKSKHIRVQRNAT 188

Query:   247 GAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR----AAT 302
             GA+ N+  +++ + +L + G +  L+ ++    PDV       ++N A  E+     A T
Sbjct:   189 GALLNMTHSEENRKELVNAGAVPVLVSLLSSTDPDVQYYCTTALSNIAVDEANRKKLAQT 248

Query:   303 QVRFI 307
             + R +
Sbjct:   249 EPRLV 253

GO:0042144 "vacuole fusion, non-autophagic" evidence=IMP

GO:0043495 "protein anchor" evidence=IMP;IPI

GO:0071562 "nucleus-vacuole junction assembly" evidence=IMP

GO:0071561 "nucleus-vacuole junction" evidence=IDA;IPI

GO:0000011 "vacuole inheritance" evidence=IEA;IMP

GO:0071255 "CVT vesicle assembly" evidence=IMP

GO:0016236 "macroautophagy" evidence=IMP

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0071563 "Myo2p-Vac17p-Vac8p transport complex" evidence=IDA;IPI

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPC6	ARK2_ARATH	No assigned EC number	0.745	0.9460	0.4317	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.II.1382.1 hypothetical protein (894 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	408
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-10
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	9e-05
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-04
pfam04826	254	pfam04826, Arm_2, Armadillo-like	0.002

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.9 bits (156), Expect = 1e-12
 Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 3/120 (2%)

Query: 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEK-IVEAGGLSSLLMLLRSF 193
            + +  GL  ++SLL S D NV+  A   ++NL+A   +  + +VEAGGL +L+ LL+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS- 60

Query: 194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC 253
           EDE + + A  A+ NLA   E N+ +++  GG+  L     D+ +    +   GA++NL 
Sbjct: 61  EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL-VNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.8 bits (135), Expect = 9e-10
 Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 3/121 (2%)

Query: 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA 234
           E +++AGGL +L+ LL S  DE ++R AA A++NL+     N + ++  GG+  L     
Sbjct: 1   EAVIQAGGLPALVSLLSS-SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 235 DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293
             ED + ++    A+ NL  G +  ++ +   GG+  L+ ++   + D+       ++N 
Sbjct: 60  S-EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 294 A 294
           A
Sbjct: 119 A 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 40/123 (32%), Positives = 69/123 (56%), Gaps = 9/123 (7%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANL-AAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           G+  ++ LL S +++ + +A  ++A L  A E++  K+++AG +  LL LL    + ++R
Sbjct: 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVR 249

Query: 200 RVAAGAIANL-AMNAEANQELIMAQGGISLLSTTAA------DAEDPQTLRMVA-GAIAN 251
             AAGA+  L + + EA Q +  A G  +L++ T A        E  Q L+  A GA+AN
Sbjct: 250 AEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALAN 309

Query: 252 LCG 254
           +CG
Sbjct: 310 ICG 312

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLA 210
             N++ ++EAG +  L+ LL S  DE ++  AA A++NLA
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSS-PDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 18/118 (15%)

Query: 238 DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296
           D    R  A A++NL  GN+     +   GG+ AL+ +++    +V+      + N A  
Sbjct: 20  DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79

Query: 297 ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354
                                + +++E G +P +V   ++    I+++   AL +LA 
Sbjct: 80  PEDN-----------------KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|218281 pfam04826, Arm_2, Armadillo-like

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 5/81 (6%)

Query: 142 LHKILSLLESEDANVRIHAVKVVA--NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           L K+L+LLES +    IH + ++   N AA   NQ+ I + GG+  +  LL S  +  I+
Sbjct: 14  LQKLLALLESTEDPF-IHEIALITLGNSAAYSFNQDIIRDLGGIPIIANLL-SNPNPEIK 71

Query: 200 RVAAGAIANLAMNAEANQELI 220
             A  A+ NL++N E NQ+ I
Sbjct: 72  EKALNALNNLSVNVE-NQKKI 91

This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors. Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	408
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.94
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.94
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.69
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.59
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.53
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.47
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.32
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.3
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.28
PRK09687	280	putative lyase; Provisional	99.25
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.24
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.23
PRK09687	280	putative lyase; Provisional	99.16
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.12
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.1
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.07
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.01
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.91
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.85
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.82
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.76
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.74
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.74
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.71
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.7
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.69
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.65
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.56
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.47
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.36
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.29
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.24
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.2
PF05536	543	Neurochondrin: Neurochondrin	98.19
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.17
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.15
PTZ00429	746	beta-adaptin; Provisional	98.13
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.12
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.11
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.04
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.04
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.01
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.97
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.95
TIGR02270	410	conserved hypothetical protein. Members are found	97.95
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.94
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.92
TIGR02270	410	conserved hypothetical protein. Members are found	97.89
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.87
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.86
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.83
COG5369	743	Uncharacterized conserved protein [Function unknow	97.81
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.54
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.53
PTZ00429	746	beta-adaptin; Provisional	97.52
PF05536	543	Neurochondrin: Neurochondrin	97.5
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.48
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.46
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.46
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.41
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.3
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.27
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.26
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.25
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.24
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.19
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.19
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.17
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.12
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.1
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.03
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.94
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.86
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.76
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.71
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.7
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	96.65
COG5369	743	Uncharacterized conserved protein [Function unknow	96.65
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.65
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.65
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.61
KOG3036	293	consensus Protein involved in cell differentiation	96.57
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	96.52
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.51
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.5
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.48
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.47
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.46
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.29
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	96.26
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	96.23
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.13
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.05
PRK14707	2710	hypothetical protein; Provisional	96.03
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.02
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.95
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.95
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.94
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	95.87
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.87
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.86
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	95.84
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.83
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.78
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.78
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	95.63
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.52
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	95.49
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.48
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	95.44
PRK14707	2710	hypothetical protein; Provisional	95.43
KOG1242	569	consensus Protein containing adaptin N-terminal re	95.4
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.35
KOG3036	293	consensus Protein involved in cell differentiation	95.24
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.11
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.08
KOG0414	1251	consensus Chromosome condensation complex Condensi	95.07
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	95.06
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	95.06
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	95.06
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.93
KOG0567	289	consensus HEAT repeat-containing protein [General	94.88
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.87
PF05004	309	IFRD: Interferon-related developmental regulator (	94.85
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.8
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.79
KOG2259	823	consensus Uncharacterized conserved protein [Funct	94.72
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.7
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	94.66
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.66
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.63
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	94.59
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.53
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.5
KOG0212	675	consensus Uncharacterized conserved protein [Funct	94.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.42
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.11
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	94.11
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.01
KOG0567	289	consensus HEAT repeat-containing protein [General	93.99
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.98
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.91
KOG2259	823	consensus Uncharacterized conserved protein [Funct	93.87
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.81
PF05004	309	IFRD: Interferon-related developmental regulator (	93.81
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.6
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	93.47
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.37
PF07814	361	WAPL: Wings apart-like protein regulation of heter	93.25
KOG4653	982	consensus Uncharacterized conserved protein [Funct	93.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.11
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	93.1
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.93
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	92.79
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	92.77
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	92.75
COG5098	1128	Chromosome condensation complex Condensin, subunit	92.52
KOG2956	516	consensus CLIP-associating protein [General functi	92.44
KOG2025	892	consensus Chromosome condensation complex Condensi	92.34
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	92.17
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.99
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	91.98
KOG2062	929	consensus 26S proteasome regulatory complex, subun	91.6
KOG1824	1233	consensus TATA-binding protein-interacting protein	91.07
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.02
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	90.88
KOG2062	929	consensus 26S proteasome regulatory complex, subun	90.65
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.51
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	90.5
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	90.3
PF07814	361	WAPL: Wings apart-like protein regulation of heter	90.01
KOG2025	892	consensus Chromosome condensation complex Condensi	89.65
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.36
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	88.42
KOG0301	745	consensus Phospholipase A2-activating protein (con	88.18
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.02
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.46
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	87.22
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	87.17
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.14
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	86.9
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	86.59
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	86.47
COG5116	926	RPN2 26S proteasome regulatory complex component [	86.3
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	86.28
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.88
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	85.64
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	85.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.33
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	85.3
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	85.16
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	85.08
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	84.87
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	84.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	83.94
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	83.6
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	82.99
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	82.98
PRK09169	2316	hypothetical protein; Validated	82.87
COG5098	1128	Chromosome condensation complex Condensin, subunit	82.51
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	82.12
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	81.8
KOG2032	533	consensus Uncharacterized conserved protein [Funct	81.77
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	81.76
KOG2137	700	consensus Protein kinase [Signal transduction mech	81.15
PF14662	193	CCDC155: Coiled-coil region of CCDC155	81.15
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	80.7

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.1e-43  Score=335.75  Aligned_cols=373  Identities=15%  Similarity=0.153  Sum_probs=328.0

Q ss_pred             CeeeeeccCCC---CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHh
Q 041050            1 MHVLFYDTGFE---PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR   77 (408)
Q Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (408)
                      ||||||||+|+   |.+.|||+|++||.+++||++|++.|.+|+.+.|+... .+++++++++|+.++.|+|++...+|+
T Consensus       199 iyifFcfst~tkfh~li~~ykIGtLCmn~idhElkRye~w~~El~k~krs~d-e~p~netLk~e~dr~~kklk~~~~KQe  277 (791)
T KOG1222|consen  199 IYIFFCFSTYTKFHPLIVQYKIGTLCMNAIDHELKRYEFWIAELKKTKRSTD-EKPKNETLKEEIDRLNKKLKTAIRKQE  277 (791)
T ss_pred             eeeeeeccccccccchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhhcccc-cCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            79999999998   99999999999999999999999999999999998876 688899999999999999999999999


Q ss_pred             hhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-----cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCC
Q 041050           78 KLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESE  152 (408)
Q Consensus        78 ~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~  152 (408)
                      ++.+...++..++.+....+.|||++.+...+++.+.+.+     ..+.|++.+|.+.+|...+.+.|.|++|+.++.+.
T Consensus       278 qLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  278 QLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999887766     57899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      +++++...++.|.|++++..++.+++..|.+|.|..+|.+   .+....|+..++.++.+ ++.+.++..+++|+.++..
T Consensus       358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~---d~~~~iA~~~lYh~S~d-D~~K~MfayTdci~~lmk~  433 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDS---DTKHGIALNMLYHLSCD-DDAKAMFAYTDCIKLLMKD  433 (791)
T ss_pred             CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCC---cccchhhhhhhhhhccC-cHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999984   24456689999999999 9999999999999999988


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhcc---------------
Q 041050          233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKC---------------  296 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~---------------  296 (408)
                      +..+.+..+.......+.|||.+..|.+.+++..|+..|+... +..|+-+.+    .++|++.+               
T Consensus       434 v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK----~vRniSqHeg~tqn~FidyvgdL  509 (791)
T KOG1222|consen  434 VLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMK----VVRNISQHEGATQNMFIDYVGDL  509 (791)
T ss_pred             HHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHH----HHHHhhhccchHHHHHHHHHHHH
Confidence            7778888888888899999999999999999988998888755 555554332    22222221               


Q ss_pred             -------chhh-hhHHHhhhhhc-cCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050          297 -------ESRA-ATQVRFIRCTA-TGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQHEVNAREMISG  365 (408)
Q Consensus       297 -------~~~~-~~~~~~~i~~~-~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~~~~~l~~~  365 (408)
                             ++++ ..+-.|+++++ ..+.++...+.+...+||+...|.++  ..++....+.++++++.+..++.-++.+
T Consensus       510 a~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a  589 (791)
T KOG1222|consen  510 AGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPA  589 (791)
T ss_pred             HHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCcc
Confidence                   1111 12223445554 35677888888999999999999876  6779999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCHHH
Q 041050          366 GALWELVRISRDCSRED  382 (408)
Q Consensus       366 g~i~~L~~ll~~~~~~~  382 (408)
                      |.++.|++++++++.+|
T Consensus       590 ~~i~tlieLL~a~QeDD  606 (791)
T KOG1222|consen  590 KLIDTLIELLQACQEDD  606 (791)
T ss_pred             ccHHHHHHHHHhhcccc
Confidence            99999999999988776

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=100.00  E-value=1.8e-40  Score=345.21  Aligned_cols=370  Identities=18%  Similarity=0.173  Sum_probs=322.8

Q ss_pred             CeeeeeccCCC---CCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHh
Q 041050            1 MHVLFYDTGFE---PGASAAEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR   77 (408)
Q Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (408)
                      ||||||||+|+   ++.+|+|+|+.||+++|+|++|++.|.+|+.++++..++ .   ...++++++..|+|+....+|+
T Consensus       188 ~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~-~---~~~~~~~~~~~kk~~~l~~kQe  263 (708)
T PF05804_consen  188 IYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEE-K---PEAKKDYEKELKKLQTLIRKQE  263 (708)
T ss_pred             HHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-c---hhhhhhHHHHHHHHHHHHHHHH
Confidence            69999999999   999999999999999999999999999999999886431 1   1337888999999999999999


Q ss_pred             hhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-----cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCC
Q 041050           78 KLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-----KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESE  152 (408)
Q Consensus        78 ~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-----~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~  152 (408)
                      ++.+...++..++++......+|++......+++.+.+.+     ....|++++|.+.+|...|.+.|.+++|+.+++++
T Consensus       264 qLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~  343 (708)
T PF05804_consen  264 QLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSE  343 (708)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCC
Confidence            9999999999999999999999999888888888876555     45789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      +.+++..++++|.||++++..|..+++.|.+|+|+.+|.+   +..+..++.+|+|||.+ ++++..+..++++|.++.+
T Consensus       344 ~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~  419 (708)
T PF05804_consen  344 NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQM  419 (708)
T ss_pred             CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHH
Confidence            9999999999999999999999999999999999999983   34667799999999999 9999999999999999998


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccc--------------
Q 041050          233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCE--------------  297 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~--------------  297 (408)
                      +..++++.+...+++++.||+.++.+.+.+++.||++.|+... +..|+-+.    ..++|++.++              
T Consensus       420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~h~~~~k~~f~~~i~~L  495 (708)
T PF05804_consen  420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQHDGPLKELFVDFIGDL  495 (708)
T ss_pred             HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHhcCchHHHHHHHHHHHH
Confidence            8777788888889999999999999999999999999998866 45554433    3555555433              


Q ss_pred             ---------hhhhhHHHhhhhhcc-CChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050          298 ---------SRAATQVRFIRCTAT-GVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQHEVNAREMISG  365 (408)
Q Consensus       298 ---------~~~~~~~~~~i~~~~-~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~~~~~l~~~  365 (408)
                               .+...+..|+++|+. .+.++...+.+.+.+|+|..+|.++  ++++..+++..++++|.++.++..+++.
T Consensus       496 ~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~s  575 (708)
T PF05804_consen  496 AKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKS  575 (708)
T ss_pred             HHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhC
Confidence                     112344446677764 4557777777899999999999765  6789999999999999999999999999


Q ss_pred             CcHHHHHHHHhcCCHHH
Q 041050          366 GALWELVRISRDCSRED  382 (408)
Q Consensus       366 g~i~~L~~ll~~~~~~~  382 (408)
                      |.++.|+.++.+.+++|
T Consensus       576 gli~~Li~LL~~kqeDd  592 (708)
T PF05804_consen  576 GLIPTLIELLNAKQEDD  592 (708)
T ss_pred             ChHHHHHHHHHhhCchH
Confidence            99999999999888766

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=7.4e-29  Score=246.52  Aligned_cols=275  Identities=20%  Similarity=0.325  Sum_probs=239.1

Q ss_pred             hHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCCHHH
Q 041050           79 LEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SEDANV  156 (408)
Q Consensus        79 ~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v  156 (408)
                      ....+..+.|..++..+++.+ .|+.++++                     .++++..++..|.||.++.+|. ..++.+
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~---------------------~~ppi~~vi~~G~v~~lV~~l~~~~~~~l  126 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKE---------------------RNPPIDEVIQSGVVPRLVEFLSRDDNPTL  126 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccC---------------------CCCCHHHHHHcCcHHHHHHHHccCCChhH
Confidence            556667777777777776665 66666655                     5689999999999999999998 667999


Q ss_pred             HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhc
Q 041050          157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAAD  235 (408)
Q Consensus       157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~  235 (408)
                      +..|+|+|.|+|. +.+....+++.|++|.++.++.+ +++.+++.|+|||+|++.+++..|+.+++.|++++|+.++..
T Consensus       127 q~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s-~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~  205 (514)
T KOG0166|consen  127 QFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSS-PSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNK  205 (514)
T ss_pred             HHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcC-CcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhcc
Confidence            9999999999998 77888889999999999999994 789999999999999999999999999999999999999865


Q ss_pred             CCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC
Q 041050          236 AEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG  313 (408)
Q Consensus       236 ~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~  313 (408)
                      .....+++.+.|+|.|||  .+|.....-+ ..+++.|..++.+.|++|+..|+|||++|+.                 |
T Consensus       206 ~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v-~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd-----------------g  267 (514)
T KOG0166|consen  206 SDKLSMLRNATWTLSNLCRGKNPSPPFDVV-APILPALLRLLHSTDEEVLTDACWALSYLTD-----------------G  267 (514)
T ss_pred             ccchHHHHHHHHHHHHHHcCCCCCCcHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc-----------------C
Confidence            444579999999999999  3343332222 3689999999999999999999999999997                 7


Q ss_pred             ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHH-HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNARE-MISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      ..+..+.+++.|++|.|+++|.+.+..++..|..+++|++++.+..+. ++..|+++.|..++..+..+.+++.|.|+++
T Consensus       268 ~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iS  347 (514)
T KOG0166|consen  268 SNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTIS  347 (514)
T ss_pred             ChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHH
Confidence            888888899999999999999999999999999999999999766655 5599999999999997767779999999988


Q ss_pred             c
Q 041050          393 S  393 (408)
Q Consensus       393 ~  393 (408)
                      +
T Consensus       348 N  348 (514)
T KOG0166|consen  348 N  348 (514)
T ss_pred             H
Confidence            7

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1e-28  Score=245.44  Aligned_cols=311  Identities=18%  Similarity=0.245  Sum_probs=243.1

Q ss_pred             HHHhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccc-cchhh-----hhhc-CCCCchHHHHH
Q 041050           65 LHKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLD-KHSQF-----RDSG-NGQKAPITKLF  137 (408)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~-----l~~l-s~~~~~~~~l~  137 (408)
                      +.+.+.+....+-..-..+..+.|.... +..+.--+. +....++..+.+.+ ..++|     +.++ +|..+..+.++
T Consensus        72 ~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv  149 (514)
T KOG0166|consen   72 LAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVV  149 (514)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccc
Confidence            3333444444444555555666665444 222211222 22222333332222 33344     4666 78888999999


Q ss_pred             HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC---
Q 041050          138 EQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA---  213 (408)
Q Consensus       138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~---  213 (408)
                      +.|.+|.++.++.+++.+++++|+|+|+|+++ .+..|..+++.|++++|+.++..+....+.+.++|+|.|||.++   
T Consensus       150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~  229 (514)
T KOG0166|consen  150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS  229 (514)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999 78999999999999999999875433355566666666666654   


Q ss_pred             ---------------------------------------hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-
Q 041050          214 ---------------------------------------EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-  253 (408)
Q Consensus       214 ---------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-  253 (408)
                                                             ++..+.+++.|++|.|+.+| ...++.++..++++++|++ 
T Consensus       230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL-~~~~~~v~~PaLRaiGNIvt  308 (514)
T KOG0166|consen  230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLL-GHSSPKVVTPALRAIGNIVT  308 (514)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHH-cCCCcccccHHHhhccceee
Confidence                                                   55668899999999999999 5566788999999999998 


Q ss_pred             CCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH
Q 041050          254 GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ  332 (408)
Q Consensus       254 ~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~  332 (408)
                      +++...+.+++.|+++.|..++. ++...++++|||+|+|++.                 |+.+..+.++++|++|+|+.
T Consensus       309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA-----------------G~~~qiqaVida~l~p~Li~  371 (514)
T KOG0166|consen  309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA-----------------GNQEQIQAVIDANLIPVLIN  371 (514)
T ss_pred             ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc-----------------CCHHHHHHHHHcccHHHHHH
Confidence            99999999999999999999997 6666699999999999998                 99999999999999999999


Q ss_pred             hccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050          333 NANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT  396 (408)
Q Consensus       333 lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  396 (408)
                      ++++.+.++|++|+||++|++.+  ++...++++.|.+++|..+|. ..+.++...+...+.+-..
T Consensus       372 ~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~-~~D~~ii~v~Ld~l~nil~  436 (514)
T KOG0166|consen  372 LLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT-CPDVKIILVALDGLENILK  436 (514)
T ss_pred             HHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc-CCChHHHHHHHHHHHHHHH
Confidence            99999999999999999999987  566788899999999999995 5555556666665554443

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=4.4e-29  Score=232.24  Aligned_cols=278  Identities=18%  Similarity=0.222  Sum_probs=232.0

Q ss_pred             HHHhhhhhhhHHHH-HHHhhhhccccc------------ccccccc----cchhh-----hhhc-CCCCchHHHHHHhcC
Q 041050           85 ILRSQLLQLTFEAD-QMQKCLERGEFG------------NTFTGLD----KHSQF-----RDSG-NGQKAPITKLFEQVG  141 (408)
Q Consensus        85 ~l~~~l~~~~~~~~-~~r~~~~~~~~~------------~~~~~~~----~~~~~-----l~~l-s~~~~~~~~l~~~~~  141 (408)
                      .|.|.+-+...++. +.|+-++++...            +++++++    .-++|     +.++ ||.....+-+++.|+
T Consensus        79 ~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~A  158 (526)
T COG5064          79 QLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGA  158 (526)
T ss_pred             HHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCc
Confidence            34455555555444 588888887532            3334432    11333     4666 678888888999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCC------
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNA------  213 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~------  213 (408)
                      ||.++++|.+++.+++++++|+|+|+++ .+..|+.+.+.|++.+++.++.++ .+..+.+.+.|.|.|||...      
T Consensus       159 VPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w  238 (526)
T COG5064         159 VPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW  238 (526)
T ss_pred             hHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence            9999999999999999999999999999 788899999999999999998754 23567777888888887754      


Q ss_pred             ------------------------------------hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc
Q 041050          214 ------------------------------------EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GND  256 (408)
Q Consensus       214 ------------------------------------~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~  256 (408)
                                                          .+..+.+.+.|..++|+++| .+++..++..+++.++|+. +++
T Consensus       239 ~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL-s~~sa~iqtPalR~vGNIVTG~D  317 (526)
T COG5064         239 SNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL-SHESAKIQTPALRSVGNIVTGSD  317 (526)
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh-cCccccccCHHHHhhcCeeecCc
Confidence                                                23346677888888999998 4577789999999999998 888


Q ss_pred             hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050          257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       257 ~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      ...+.+++.|+++++..+|.++...+++++||+++|++.                 |+.+..+.+++.+.+|+|+++|.+
T Consensus       318 ~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITA-----------------Gnteqiqavid~nliPpLi~lls~  380 (526)
T COG5064         318 DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITA-----------------GNTEQIQAVIDANLIPPLIHLLSS  380 (526)
T ss_pred             cceehheecccHHHHHHHhcChhhhhhhhhheeeccccc-----------------CCHHHHHHHHhcccchHHHHHHHH
Confidence            888999999999999999999988999999999999998                 999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHccC----chhHHHHHhCCcHHHHHHHHhcCCH
Q 041050          337 EAAPIRRHIELALCHLAQH----EVNAREMISGGALWELVRISRDCSR  380 (408)
Q Consensus       337 ~~~~v~~~a~~aL~~La~~----~~~~~~l~~~g~i~~L~~ll~~~~~  380 (408)
                      -+..++++||||+.|.+.+    ++..+.+++.|.+++|..+|...++
T Consensus       381 ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN  428 (526)
T COG5064         381 AEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN  428 (526)
T ss_pred             HHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc
Confidence            9999999999999999876    5667888899999999999985443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.94  E-value=1.7e-24  Score=243.21  Aligned_cols=264  Identities=18%  Similarity=0.201  Sum_probs=221.1

Q ss_pred             hhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHH
Q 041050          124 DSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRV  201 (408)
Q Consensus       124 ~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~  201 (408)
                      .++. +..+.++.++..|++|.|+++|++++..+|..|+++|+||+. +++++..|++.||||+|+.+|.+ .+..+++.
T Consensus       429 ~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s-~~~~iqee  507 (2102)
T PLN03200        429 SSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET-GSQKAKED  507 (2102)
T ss_pred             HHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHH
Confidence            4443 557778889999999999999999999999999999999997 77899999999999999999984 68899999


Q ss_pred             HHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-----------------------
Q 041050          202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-----------------------  258 (408)
Q Consensus       202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~-----------------------  258 (408)
                      |+|+|+||+.+++.++..+.+.|++++|+.+|. +.++.++..++++|.||+.+.+.                       
T Consensus       508 AawAL~NLa~~~~qir~iV~~aGAIppLV~LL~-sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~  586 (2102)
T PLN03200        508 SATVLWNLCCHSEDIRACVESAGAVPALLWLLK-NGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD  586 (2102)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH
Confidence            999999999984556666668899999999994 56889999999999999622111                       


Q ss_pred             ---------------HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh
Q 041050          259 ---------------QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE  323 (408)
Q Consensus       259 ---------------~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~  323 (408)
                                     +......||++.|+.+++++++.+++.|+|+|+|++.                 ++++.+..++.
T Consensus       587 vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a-----------------~~~d~~~avv~  649 (2102)
T PLN03200        587 VLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFS-----------------SRQDLCESLAT  649 (2102)
T ss_pred             HHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----------------CChHHHHHHHH
Confidence                           1111246899999999999999999999999999997                 88999999999


Q ss_pred             cCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH--HHHhccHhhHH
Q 041050          324 DGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH--RTLSSSLTFRA  399 (408)
Q Consensus       324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~--~~L~~~~~~~~  399 (408)
                      .|++|+++.++++++.++++.++|+|.+++.+  .++...+++.|++++|++++.+.+.+....++.  ..+...+....
T Consensus       650 agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~  729 (2102)
T PLN03200        650 DEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAA  729 (2102)
T ss_pred             cCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHH
Confidence            99999999999999999999999999999965  445567889999999999999765554333222  45556666677


Q ss_pred             HHHhhhh
Q 041050          400 EMRRLRI  406 (408)
Q Consensus       400 ~~~~~~~  406 (408)
                      ++...|+
T Consensus       730 ei~~~~~  736 (2102)
T PLN03200        730 EALAEDI  736 (2102)
T ss_pred             HHHhcCc
Confidence            7766554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.94  E-value=8.2e-26  Score=210.48  Aligned_cols=258  Identities=19%  Similarity=0.284  Sum_probs=221.5

Q ss_pred             chhhhhhcCC-CCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHH-HHHHhCCHHHHHHHHcCCCC
Q 041050          119 HSQFRDSGNG-QKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQE-KIVEAGGLSSLLMLLRSFED  195 (408)
Q Consensus       119 ~~~~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~-~i~~~g~i~~L~~lL~~~~~  195 (408)
                      .-.|.+.+|. ..+++..++..|.||.+++++. +.+.-++..|+|+|.|++++...+. .+++.|++|.++++|.+ ..
T Consensus        92 v~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s-~~  170 (526)
T COG5064          92 VYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS-TE  170 (526)
T ss_pred             HHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcC-ch
Confidence            4568888864 4899999999999999999995 6667788899999999999655554 45689999999999995 57


Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHH
Q 041050          196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~  272 (408)
                      .+|+..++|||+|++.+++..|+.+.+.|++.+++.++.++ .+..+.+.+.|+|.|||  .||...-.-+. ..++.|.
T Consensus       171 ~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~is-qalpiL~  249 (526)
T COG5064         171 DDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNIS-QALPILA  249 (526)
T ss_pred             HHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHH-HHHHHHH
Confidence            79999999999999999999999999999999999988533 34689999999999999  45533333332 4688899


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      +++.+.|+++...|+||++.|+.                 |..+...++++.|..+.|+++|.+++..++..|...++|+
T Consensus       250 KLiys~D~evlvDA~WAiSYlsD-----------------g~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI  312 (526)
T COG5064         250 KLIYSRDPEVLVDACWAISYLSD-----------------GPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI  312 (526)
T ss_pred             HHHhhcCHHHHHHHHHHHHHhcc-----------------CcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence            99999999999999999999997                 7788888999999999999999999999999999999999


Q ss_pred             ccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050          353 AQHEVNA-REMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT  396 (408)
Q Consensus       353 a~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  396 (408)
                      .++.+.. ..++..|+++.+..+|.+ ..+.+++.|.|++++-.+
T Consensus       313 VTG~D~QTqviI~~G~L~a~~~lLs~-~ke~irKEaCWTiSNITA  356 (526)
T COG5064         313 VTGSDDQTQVIINCGALKAFRSLLSS-PKENIRKEACWTISNITA  356 (526)
T ss_pred             eecCccceehheecccHHHHHHHhcC-hhhhhhhhhheeeccccc
Confidence            9996655 456699999999999874 566899999999887544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.93  E-value=2.7e-23  Score=233.63  Aligned_cols=252  Identities=18%  Similarity=0.227  Sum_probs=215.8

Q ss_pred             hhhhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHH-HHHhCCHHHHHHHHcCCCCHH
Q 041050          120 SQFRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEK-IVEAGGLSSLLMLLRSFEDET  197 (408)
Q Consensus       120 ~~~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~-i~~~g~i~~L~~lL~~~~~~~  197 (408)
                      ...+.+++. ..++...+++.|++|+|+++|.+++..++..|+|+|+||+.++.+... +.+.|++|+|+.+|++ .+..
T Consensus       467 ~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~s-gd~~  545 (2102)
T PLN03200        467 VALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKN-GGPK  545 (2102)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhC-CCHH
Confidence            445667754 455677899999999999999999999999999999999996655455 5478999999999995 5789


Q ss_pred             HHHHHHHHHHHhccCChh----------------h---------------------HHHHHhcCcHHHHHHHhhcCCCHH
Q 041050          198 IRRVAAGAIANLAMNAEA----------------N---------------------QELIMAQGGISLLSTTAADAEDPQ  240 (408)
Q Consensus       198 v~~~A~~aL~nLa~~~~~----------------~---------------------~~~i~~~g~i~~Lv~lL~~~~~~~  240 (408)
                      ++..|+++|.||+.+.+.                .                     +......||++.|+.++ +++++.
T Consensus       546 ~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL-~sgs~~  624 (2102)
T PLN03200        546 GQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLL-SSSKEE  624 (2102)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHH-cCCCHH
Confidence            999999999999643110                0                     11112468999999999 567889


Q ss_pred             HHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050          241 TLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS  319 (408)
Q Consensus       241 v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (408)
                      +++.|+++|+|++ +++.+...++..|++++++.+|++.+.+++++++|+|.|++.+                ++...+.
T Consensus       625 ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~----------------~~~~q~~  688 (2102)
T PLN03200        625 TQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS----------------IKENRKV  688 (2102)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC----------------CCHHHHH
Confidence            9999999999999 7888888999999999999999999999999999999999962                5556667


Q ss_pred             HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050          320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~  389 (408)
                      .+++.|++|+|++++++++.+++..|+.+|.|++.+.+.+..+...|+++.|++++++.+++..+.+|..
T Consensus       689 ~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~A  758 (2102)
T PLN03200        689 SYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARA  758 (2102)
T ss_pred             HHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999999999999999999888777777663

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.2e-23  Score=194.73  Aligned_cols=312  Identities=19%  Similarity=0.198  Sum_probs=257.2

Q ss_pred             HHHhhhHHHHHHHHhhhhhhhHHHHHHHh----hhhcccccccccccc---------------cchhhhhhcCCCCchHH
Q 041050           74 LQKRKLEEEIVILRSQLLQLTFEADQMQK----CLERGEFGNTFTGLD---------------KHSQFRDSGNGQKAPIT  134 (408)
Q Consensus        74 ~~~~~~~~~~~~l~~~l~~~~~~~~~~r~----~~~~~~~~~~~~~~~---------------~~~~~l~~ls~~~~~~~  134 (408)
                      ..|++.|.+..-+.+.+.+.+.-+...-.    .+++-++.-.+.|++               ..+.-..++..+.++.-
T Consensus        82 Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d~nk~  161 (550)
T KOG4224|consen   82 VSRESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFDSNKV  161 (550)
T ss_pred             hhhhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccccchh
Confidence            45678888888888888887543222111    111112222223333               11333466767788888


Q ss_pred             HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      ++...|++.++..+-++.+..+|.++..+|.|++...++|..++..||+|.|++++++ .|++++..++.+|.|++.+ .
T Consensus       162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s-~d~dvqyycttaisnIaVd-~  239 (550)
T KOG4224|consen  162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKS-GDLDVQYYCTTAISNIAVD-R  239 (550)
T ss_pred             hhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhcc-CChhHHHHHHHHhhhhhhh-H
Confidence            9999999999999888999999999999999999999999999999999999999995 6889999999999999999 9


Q ss_pred             hhHHHHHhcC--cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050          215 ANQELIMAQG--GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN  292 (408)
Q Consensus       215 ~~~~~i~~~g--~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n  292 (408)
                      .+|+.+++.+  .+|.|+.++ ++.++.+...|.-+|.||+.+.+.+..+.+.|++|.++++++++.......-..|+.|
T Consensus       240 ~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  240 RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence            9999999998  999999997 6678899999999999999999999999999999999999988876666667789999


Q ss_pred             hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC-HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHH
Q 041050          293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA-APIRRHIELALCHLAQH-EVNAREMISGGALWE  370 (408)
Q Consensus       293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~-~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~  370 (408)
                      ++.                  ++-+...+.+.|.+.+|+.+|.-++ .+++.+|+.+|+||+.. +.+...+.++|+++.
T Consensus       319 isi------------------hplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~k  380 (550)
T KOG4224|consen  319 ISI------------------HPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPK  380 (550)
T ss_pred             ccc------------------ccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHH
Confidence            985                  4555556789999999999998765 55999999999999984 778888999999999


Q ss_pred             HHHHHhcCCHHH--HHHHHHHHHhccHhhHHHHHhhhh
Q 041050          371 LVRISRDCSRED--IRSLAHRTLSSSLTFRAEMRRLRI  406 (408)
Q Consensus       371 L~~ll~~~~~~~--~~~~A~~~L~~~~~~~~~~~~~~~  406 (408)
                      |+.++.+.+-+.  -..+|...|..+..++..+-..||
T Consensus       381 l~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi  418 (550)
T KOG4224|consen  381 LIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGI  418 (550)
T ss_pred             HHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCC
Confidence            999999776544  334555778888888888887776

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.2e-24  Score=199.48  Aligned_cols=254  Identities=19%  Similarity=0.266  Sum_probs=226.3

Q ss_pred             hhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhC--CHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAG--GLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~v~  199 (408)
                      .+-++....++.+.++..||+|.|++++++.+.++|..++.++.|++.+..+|.++++.+  .+|.|+.++.+ .++.++
T Consensus       190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~-~s~kvk  268 (550)
T KOG4224|consen  190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDD-GSDKVK  268 (550)
T ss_pred             HHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhC-CChHHH
Confidence            345556778999999999999999999999999999999999999999999999999998  79999999995 678899


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH  279 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~  279 (408)
                      -.|.-+|.||+.+ ...+..|++.|++|.+++++.++.-| .....+.+|.|++-.|-|-..|.+.|.+++|+.+|+..|
T Consensus       269 cqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~p-lilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~d  346 (550)
T KOG4224|consen  269 CQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGP-LILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD  346 (550)
T ss_pred             HHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchh-HHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCC
Confidence            9999999999999 99999999999999999999554444 444677899999998999899999999999999998655


Q ss_pred             H-HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050          280 P-DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN  358 (408)
Q Consensus       280 ~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~  358 (408)
                      . +++-+|..+|+||+.                 .+...+..|++.|++|.++.++..+.-++|.+...++..|+-+++.
T Consensus       347 nEeiqchAvstLrnLAa-----------------sse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~  409 (550)
T KOG4224|consen  347 NEEIQCHAVSTLRNLAA-----------------SSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND  409 (550)
T ss_pred             chhhhhhHHHHHHHHhh-----------------hhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence            4 599999999999996                 5788899999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050          359 AREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL  395 (408)
Q Consensus       359 ~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  395 (408)
                      +.++.+.|.++.|+.+..+.+.+..-++|..+.+.+.
T Consensus       410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            9999999999999999997777665566665544443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.79  E-value=2.8e-17  Score=172.20  Aligned_cols=248  Identities=19%  Similarity=0.218  Sum_probs=211.7

Q ss_pred             hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      ..++=+++.......++...|+|+.|+++|.+++.++...++..|.+|+...+|+..|.+.|.+++|+.++.+ ++.+++
T Consensus       270 ~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s-~~~~l~  348 (708)
T PF05804_consen  270 FYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPS-ENEDLV  348 (708)
T ss_pred             HHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcC-CCHHHH
Confidence            5567888888888899999999999999999999999999999999999999999999999999999999995 678899


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCG  278 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~  278 (408)
                      ..++++|.|||.+ +.+|..+++.|.+|.|+.+|.   ++..+..+..+|.|||.+++++..+...++++.|+.++ ..+
T Consensus       349 ~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~---d~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~  424 (708)
T PF05804_consen  349 NVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLK---DPNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENS  424 (708)
T ss_pred             HHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhC---CCchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCC
Confidence            9999999999999 999999999999999999994   34566779999999999999999999999999999977 567


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc-h
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE-V  357 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~  357 (408)
                      ++.+..+++..+.||+.                  ++.+.+.+.+.|+++.|+...-.....+   ....+.|++.++ .
T Consensus       425 ~~~v~~eliaL~iNLa~------------------~~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~  483 (708)
T PF05804_consen  425 EEEVQLELIALLINLAL------------------NKRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGP  483 (708)
T ss_pred             CccccHHHHHHHHHHhc------------------CHHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCch
Confidence            77888888999999994                  6666778888899999998775433222   335899999997 4


Q ss_pred             hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050          358 NAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL  395 (408)
Q Consensus       358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  395 (408)
                      ....+.  +.+..|+.++..++++++.-.+.-+|++..
T Consensus       484 ~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  484 LKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            444333  478888999988888887777777776654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1.1e-16  Score=149.54  Aligned_cols=255  Identities=18%  Similarity=0.245  Sum_probs=211.6

Q ss_pred             CCCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCch----------hHHHHHHhCCHHHHHHHHcCCCCH
Q 041050          128 GQKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEA----------NQEKIVEAGGLSSLLMLLRSFEDE  196 (408)
Q Consensus       128 ~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~----------~~~~i~~~g~i~~L~~lL~~~~~~  196 (408)
                      +++-+.+.+++.+..+.+...|. .+...+-+..++++..|..+++          ....|+..|++..|+..+....+|
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            55666777888888888887776 4555678889999999988654          456788888999999999877889


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHH---HHHHHHHHHHHhCCchhHHHHHhcccHHHHHH
Q 041050          197 TIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQT---LRMVAGAIANLCGNDKLQMKLRSEGGIRALLG  273 (408)
Q Consensus       197 ~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v---~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~  273 (408)
                      .+.-.+..+|..|+.. ++.+..|.+.||+..|+.++.++.+.+.   .+.++..|..|++++.++..|++.||.+.++.
T Consensus       257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~  335 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIIT  335 (461)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHH
Confidence            9999999999999999 9999999999999999999977666544   46788999999999999999999999999999


Q ss_pred             hh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHH
Q 041050          274 MV--RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELAL  349 (408)
Q Consensus       274 lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL  349 (408)
                      ++  .+++|.|..+++.+++-|+.                 ..|+.-..+++.|+-...++.++..  ...+++++||++
T Consensus       336 l~~~h~~~p~Vi~~~~a~i~~l~L-----------------R~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~I  398 (461)
T KOG4199|consen  336 LALRHSDDPLVIQEVMAIISILCL-----------------RSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMI  398 (461)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHh-----------------cCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            77  47889999999999999997                 8899999999999999999988643  677999999999


Q ss_pred             HHHccCchhHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHhccHhhHHH
Q 041050          350 CHLAQHEVNAREMISGGALWELVRISRDC--SREDIRSLAHRTLSSSLTFRAE  400 (408)
Q Consensus       350 ~~La~~~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~~~~~~~~  400 (408)
                      .|++........+.-..|++.|++..++.  +.++..++|.+-|.++.+.+.|
T Consensus       399 RNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v~lre~  451 (461)
T KOG4199|consen  399 RNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDLGCDVYLREE  451 (461)
T ss_pred             HHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhcCcchhhHHH
Confidence            99999865555555555677777766644  4455667777888887776654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=4e-16  Score=160.44  Aligned_cols=286  Identities=23%  Similarity=0.291  Sum_probs=212.9

Q ss_pred             HhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccccchhhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCH
Q 041050           76 KRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDA  154 (408)
Q Consensus        76 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~  154 (408)
                      ..++.|.+.+|.++++..+.-+.                      .+++.+ .+.+.-..++-+.|||++|+.+|.+.+.
T Consensus       232 d~~lpe~i~mL~~q~~~~qsnaa----------------------aylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~  289 (717)
T KOG1048|consen  232 DPTLPEVISMLMSQDPSVQSNAA----------------------AYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND  289 (717)
T ss_pred             ccccHHHHHHHhccChhhhHHHH----------------------HHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH
Confidence            34677777787777655442111                      122333 2344445577778999999999999999


Q ss_pred             HHHHHHHHHHHHHcC---CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC------------------
Q 041050          155 NVRIHAVKVVANLAA---EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA------------------  213 (408)
Q Consensus       155 ~v~~~A~~aL~nLa~---~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~------------------  213 (408)
                      +++.+|+++|.||.+   +++|+..|.+.+||+.++.+|+...|.++++.+.++||||+.++                  
T Consensus       290 evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~v  369 (717)
T KOG1048|consen  290 EVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNV  369 (717)
T ss_pred             HHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhh
Confidence            999999999999998   34689999999999999999997789999999999999999983                  


Q ss_pred             ------------------------------------hhhHHHHHh-cCcHHHHH--------------------------
Q 041050          214 ------------------------------------EANQELIMA-QGGISLLS--------------------------  230 (408)
Q Consensus       214 ------------------------------------~~~~~~i~~-~g~i~~Lv--------------------------  230 (408)
                                                          .+.|+.+.+ .|.|..|+                          
T Consensus       370 I~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRN  449 (717)
T KOG1048|consen  370 IIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRN  449 (717)
T ss_pred             cccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhh
Confidence                                                111222222 12222222                          


Q ss_pred             ---------------------------------------------------------------------------HHhhc
Q 041050          231 ---------------------------------------------------------------------------TTAAD  235 (408)
Q Consensus       231 ---------------------------------------------------------------------------~lL~~  235 (408)
                                                                                                 .+|..
T Consensus       450 LSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~  529 (717)
T KOG1048|consen  450 LSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLAL  529 (717)
T ss_pred             cCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHH
Confidence                                                                                       12223


Q ss_pred             CCCHHHHHHHHHHHHHHh-CCc----hhHHHH-HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhh
Q 041050          236 AEDPQTLRMVAGAIANLC-GND----KLQMKL-RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRC  309 (408)
Q Consensus       236 ~~~~~v~~~a~~aL~nL~-~~~----~~~~~i-~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~  309 (408)
                      +..+.+.+.++++|-||+ ++.    ..+..+ ..+.+++.|+.+++.+|.+|.+.++.+|.||+.              
T Consensus       530 s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~--------------  595 (717)
T KOG1048|consen  530 SKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR--------------  595 (717)
T ss_pred             hcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--------------
Confidence            345567778889999997 433    334444 678999999999999999999999999999995              


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHhccCC------CHHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050          310 TATGVKSGRSLLIEDGALPWIVQNANNE------AAPIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSRED  382 (408)
Q Consensus       310 ~~~~~~~~~~~i~~~g~l~~Lv~lL~~~------~~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~  382 (408)
                          +...+..|. .++++.|+..|...      +.++...+|.+|+++.. +..+++++.+.++++.|+.|..+.....
T Consensus       596 ----d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k  670 (717)
T KOG1048|consen  596 ----DIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPK  670 (717)
T ss_pred             ----Cchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHH
Confidence                666666666 78999999999754      37889999999999985 5889999999999999999999754444


Q ss_pred             HHHHHHHHHhccHhhHHHHHh
Q 041050          383 IRSLAHRTLSSSLTFRAEMRR  403 (408)
Q Consensus       383 ~~~~A~~~L~~~~~~~~~~~~  403 (408)
                      ..++|. .+-...|...|||.
T Consensus       671 ~~kaAs-~vL~~lW~y~eLh~  690 (717)
T KOG1048|consen  671 EFKAAS-SVLDVLWQYKELHF  690 (717)
T ss_pred             HHHHHH-HHHHHHHHHHHHhh
Confidence            444444 33356666666654

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.71  E-value=2.8e-15  Score=140.27  Aligned_cols=237  Identities=19%  Similarity=0.236  Sum_probs=198.5

Q ss_pred             hhcCCCCchHHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050          124 DSGNGQKAPITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR  200 (408)
Q Consensus       124 ~~ls~~~~~~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~  200 (408)
                      +.++.--....+++...|...++.+|.  .++.++.......+..-+. ++.+|+-+++.+.++.+...|.......+.+
T Consensus       129 ~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VR  208 (461)
T KOG4199|consen  129 EAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVR  208 (461)
T ss_pred             HHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHH
Confidence            444444455577888889999999886  6778898888888887766 8999999999999999998886543345777


Q ss_pred             HHHHHHHHhccCChhh----------HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHH
Q 041050          201 VAAGAIANLAMNAEAN----------QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRA  270 (408)
Q Consensus       201 ~A~~aL~nLa~~~~~~----------~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~  270 (408)
                      .+.|+++-|..+ +++          ...|...|++..|++.+.-.-+|+++..++.+|..|+-+++..+.|.+.||++.
T Consensus       209 el~~a~r~l~~d-DDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~t  287 (461)
T KOG4199|consen  209 ELYDAIRALLTD-DDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDT  287 (461)
T ss_pred             HHHHHHHHhcCC-CceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence            799999999888 544          467899999999999998778899999999999999999999999999999999


Q ss_pred             HHHhhcC-CCHHHH---HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc--cCCCHHHHHH
Q 041050          271 LLGMVRC-GHPDVL---SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA--NNEAAPIRRH  344 (408)
Q Consensus       271 L~~lL~~-~~~~v~---~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL--~~~~~~v~~~  344 (408)
                      |++++.+ ++...+   +.|+..|+.|+                  |+++.+..|++.|+.+.++.++  ++++|.|...
T Consensus       288 l~~~i~d~n~~~~r~l~k~~lslLralA------------------G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~  349 (461)
T KOG4199|consen  288 LLRCIDDSNEQGNRTLAKTCLSLLRALA------------------GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQE  349 (461)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHHHHHh------------------CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHH
Confidence            9999965 444444   66777777777                  8999999999999999999987  5678999999


Q ss_pred             HHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCC
Q 041050          345 IELALCHLAQH-EVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       345 a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      ++.+++.|+-. +++...+++.|+-...++-++...
T Consensus       350 ~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP  385 (461)
T KOG4199|consen  350 VMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP  385 (461)
T ss_pred             HHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc
Confidence            99999999987 778888889999887777665443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.69  E-value=3.5e-16  Score=166.88  Aligned_cols=261  Identities=18%  Similarity=0.197  Sum_probs=211.7

Q ss_pred             hhhcCCCCchHHHHHHhcCHHHHHHhhcC------------CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCC-HHHHHH
Q 041050          123 RDSGNGQKAPITKLFEQVGLHKILSLLES------------EDANVRIHAVKVVANLAA-EEANQEKIVEAGG-LSSLLM  188 (408)
Q Consensus       123 l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s------------~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~-i~~L~~  188 (408)
                      +=++|-.++....|.+-||++.+-+||.-            .+..+|.+|.++|.||++ +..|+..++...| +..+|.
T Consensus       322 lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVA  401 (2195)
T KOG2122|consen  322 LMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVA  401 (2195)
T ss_pred             HHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHH
Confidence            33444556777888899998888877641            235689999999999999 6678888887666 899999


Q ss_pred             HHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHh-c
Q 041050          189 LLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRS-E  265 (408)
Q Consensus       189 lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-~  265 (408)
                      .|.+ .+.++....+++|.||+..-+.|-+. +.+.|-+..|+....+...+..+..++.+||||+ .+.+|+..|+. .
T Consensus       402 QL~s-~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVD  480 (2195)
T KOG2122|consen  402 QLIS-APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVD  480 (2195)
T ss_pred             HHhc-ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhccc
Confidence            9985 56688899999999999986666555 5578989999887666666678889999999998 88999999997 6


Q ss_pred             ccHHHHHHhhcC----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050          266 GGIRALLGMVRC----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI  341 (408)
Q Consensus       266 g~l~~L~~lL~~----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v  341 (408)
                      |++..|+.+|.-    +.-.+.+.+.++|.|.+.              -.+...++|+.+.+++++..|++.|++..-.|
T Consensus       481 GALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS--------------~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTi  546 (2195)
T KOG2122|consen  481 GALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS--------------LIATCEDYRQILRRHNCLQTLLQHLKSHSLTI  546 (2195)
T ss_pred             chHHHHHhhccccCCcchhhhhhcCccHHHHHHh--------------HhhccchHHHHHHHhhHHHHHHHHhhhcceEE
Confidence            889999999953    345678888999999875              12357889999999999999999999999999


Q ss_pred             HHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH---HHHhccHhhH
Q 041050          342 RRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAH---RTLSSSLTFR  398 (408)
Q Consensus       342 ~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~---~~L~~~~~~~  398 (408)
                      .-++|.+||||+.. ++..+.+.+.|+++.|.+|+.+.........|.   ++|+.-|..+
T Consensus       547 VSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPAkq  607 (2195)
T KOG2122|consen  547 VSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPAKQ  607 (2195)
T ss_pred             eecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCchhh
Confidence            99999999999876 666777779999999999999776655443322   7777776654

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.63  E-value=2.3e-14  Score=147.56  Aligned_cols=249  Identities=23%  Similarity=0.301  Sum_probs=195.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh--hH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA--NQ  217 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~--~~  217 (408)
                      -+|..+.+|.+.++.++..|+..+..+++ +...+..+...|||+.|+.+|. ++...|++.|+++|.||...+..  |+
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~-~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLD-HRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhc-CCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            47899999999999999999999999999 7788899999999999999999 57899999999999999987544  89


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc---C-------C----CHHHH
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR---C-------G----HPDVL  283 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~---~-------~----~~~v~  283 (408)
                      -.|.+.+||+.++.+|+...|.+++..+.++||||+.++..+..|+.. ++..|...+-   +       +    ++++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceee
Confidence            999999999999999998889999999999999999998888888764 4444544331   1       1    24566


Q ss_pred             HHHHHHHHHhhccchhhhhHHH----------------------------------------------------------
Q 041050          284 SQVARGIANFAKCESRAATQVR----------------------------------------------------------  305 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~~~~~~~~----------------------------------------------------------  305 (408)
                      .+++++|+|++....+++.++.                                                          
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            6777777777653222221111                                                          


Q ss_pred             ---------------------------------------------------------------------hh-----hhhc
Q 041050          306 ---------------------------------------------------------------------FI-----RCTA  311 (408)
Q Consensus       306 ---------------------------------------------------------------------~~-----i~~~  311 (408)
                                                                                           |+     +|..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                                                                                 11     1222


Q ss_pred             cCChhhHHHH-HhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH-----HHHHH
Q 041050          312 TGVKSGRSLL-IEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR-----EDIRS  385 (408)
Q Consensus       312 ~~~~~~~~~i-~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~-----~~~~~  385 (408)
                      .-....+..+ ....++|.|+++++.+++.+...++.+|.||+.+..++..|. .++++-|++.+.....     ++...
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~  630 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVR  630 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHH
Confidence            2222223444 677899999999999999999999999999999998865555 8899999999987665     66554


Q ss_pred             HHHHHHh
Q 041050          386 LAHRTLS  392 (408)
Q Consensus       386 ~A~~~L~  392 (408)
                      .+..+|.
T Consensus       631 ~vc~tl~  637 (717)
T KOG1048|consen  631 AVCHTLN  637 (717)
T ss_pred             HHHHhHH
Confidence            5554443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=2.2e-14  Score=134.22  Aligned_cols=182  Identities=24%  Similarity=0.266  Sum_probs=159.4

Q ss_pred             HHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc
Q 041050          177 IVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND  256 (408)
Q Consensus       177 i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~  256 (408)
                      +.+.+.++.|+.+|+.+.||.+++.|..+++|.+.. +.+|+.|.+.||++.+..++ +.++|.++..|++++.|++.+.
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL-~~p~~~vr~~AL~aL~Nls~~~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLL-NDPNPSVREKALNALNNLSVND   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHc-CCCChHHHHHHHHHHHhcCCCh
Confidence            355667999999999888999999999999999999 99999999999999999998 6689999999999999999999


Q ss_pred             hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc
Q 041050          257 KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA  334 (408)
Q Consensus       257 ~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL  334 (408)
                      +++..+..  .++.+++...  .-+..++..+.++|.||+.                  +++++..+.  +.+|.++.++
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv------------------~~~~~~~l~--~~i~~ll~LL  143 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTV------------------TNDYHHMLA--NYIPDLLSLL  143 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCC------------------CcchhhhHH--hhHHHHHHHH
Confidence            99998754  4666666553  3478899999999999985                  455555665  4799999999


Q ss_pred             cCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050          335 NNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSRED  382 (408)
Q Consensus       335 ~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~  382 (408)
                      .+++..++.++..+|.||+.++...++++..+++..++.|...+...+
T Consensus       144 ~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~  191 (254)
T PF04826_consen  144 SSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKE  191 (254)
T ss_pred             HcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccH
Confidence            999999999999999999999999999999999999999998775554

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.59  E-value=1e-13  Score=129.73  Aligned_cols=196  Identities=23%  Similarity=0.265  Sum_probs=170.7

Q ss_pred             HHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          136 LFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       136 l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      ..+.+.+++|+.+|+ +.++.+++.+..+++|.+..+.++..|.+.||++.+..+|.+ +++.++..|+++|.|++.+ .
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~-p~~~vr~~AL~aL~Nls~~-~   85 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND-PNPSVREKALNALNNLSVN-D   85 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC-CChHHHHHHHHHHHhcCCC-h
Confidence            356677999999999 678999999999999999999999999999999999999995 7899999999999999999 9


Q ss_pred             hhHHHHHhcCcHHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          215 ANQELIMAQGGISLLSTTA-ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL-~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      +++..|-.  .++.++... ..+-+..++..++++|.||+..+..+..+.  +.++.++.+|.+++..++.++.++|.||
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            99998754  466666543 334466899999999999997777777775  4788999999999999999999999999


Q ss_pred             hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC
Q 041050          294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH  355 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~  355 (408)
                      +.                  +++....++..++++.++.++... +.++...+...+.|+..+
T Consensus       162 S~------------------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SE------------------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cc------------------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            94                  677777888889999999999775 788899999999999765

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.53  E-value=8.8e-14  Score=148.90  Aligned_cols=217  Identities=19%  Similarity=0.257  Sum_probs=185.1

Q ss_pred             hhhc-CCCCchHHHHHHhcC-HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHH-HhCCHHHHHHHHcCCCCHHH
Q 041050          123 RDSG-NGQKAPITKLFEQVG-LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIV-EAGGLSSLLMLLRSFEDETI  198 (408)
Q Consensus       123 l~~l-s~~~~~~~~l~~~~~-v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~-~~g~i~~L~~lL~~~~~~~v  198 (408)
                      |.+| .|...|++.++.+.| +..++.-|.+..+++...-+.+|.||++ -+.|-.+++ +.|-+..|...--....+..
T Consensus       375 LTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsT  454 (2195)
T KOG2122|consen  375 LTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKEST  454 (2195)
T ss_pred             hhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccch
Confidence            4666 588889999999877 6888999999999999999999999999 555555555 56668888776432345567


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHh-cCcHHHHHHHhhc---CCCHHHHHHHHHHHHHHh----CCchhHHHHHhcccHHH
Q 041050          199 RRVAAGAIANLAMNAEANQELIMA-QGGISLLSTTAAD---AEDPQTLRMVAGAIANLC----GNDKLQMKLRSEGGIRA  270 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l~~  270 (408)
                      .+..+.|||||+.++.+|+..|.. .|++..|+.+|.-   +....+...+-++|.|.+    .++..|+.+++++++..
T Consensus       455 LKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~  534 (2195)
T KOG2122|consen  455 LKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQT  534 (2195)
T ss_pred             HHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHH
Confidence            888999999999999999999987 4677889999852   233457778888888875    77889999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHH
Q 041050          271 LLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC  350 (408)
Q Consensus       271 L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~  350 (408)
                      |++.|++..--+..++|++|+||+.                 .++.-++.+++.|+++.|..++++.+..+.+-++.+|.
T Consensus       535 LLQ~LKS~SLTiVSNaCGTLWNLSA-----------------R~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALr  597 (2195)
T KOG2122|consen  535 LLQHLKSHSLTIVSNACGTLWNLSA-----------------RSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALR  597 (2195)
T ss_pred             HHHHhhhcceEEeecchhhhhhhhc-----------------CCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999997                 88999999999999999999999999999999999999


Q ss_pred             HHccCc
Q 041050          351 HLAQHE  356 (408)
Q Consensus       351 ~La~~~  356 (408)
                      ||....
T Consensus       598 NLln~R  603 (2195)
T KOG2122|consen  598 NLLNFR  603 (2195)
T ss_pred             HHhcCC
Confidence            988775

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.47  E-value=1.5e-12  Score=107.34  Aligned_cols=117  Identities=36%  Similarity=0.542  Sum_probs=108.0

Q ss_pred             HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050          135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA  213 (408)
Q Consensus       135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  213 (408)
                      .+++.|+++.+++++.+++..++..++++|++++.. ++....+++.|+++.++.++.+ +++.++..|+++|+||+.+.
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCc
Confidence            467889999999999999999999999999999994 8999999999999999999995 68999999999999999996


Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050          214 EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       214 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~  253 (408)
                      +..+..+...|+++.|+.++ ...+..+++.+++++.|||
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence            67888899999999999998 4568899999999999997

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=2e-12  Score=106.64  Aligned_cols=118  Identities=23%  Similarity=0.402  Sum_probs=107.4

Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                      .+++.|+++.|+.++. ..++.++..++++|+|++. ++.....+.+.|+++.++.++.++++.++..++++|+||+.  
T Consensus         2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~--   78 (120)
T cd00020           2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAA--   78 (120)
T ss_pred             hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHcc--
Confidence            4678999999999995 5668999999999999994 48999999999999999999999999999999999999997  


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                                     +.+.....+.+.|+++.|++++..++.+++..++++|++++.
T Consensus        79 ---------------~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          79 ---------------GPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             ---------------CcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence                           566677788899999999999999999999999999999874

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.32  E-value=2.9e-10  Score=117.40  Aligned_cols=214  Identities=13%  Similarity=0.136  Sum_probs=184.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050          145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG  224 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g  224 (408)
                      ++..|++.+.+.-..++.+|..+.........  ..+..+.|...|. ++++.|+..+++.|.++..+++.....+.+.+
T Consensus        43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~-h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   43 LFDCLNTSNREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLT-HPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            67888877777778888888887663333332  3445778888888 57899999999999999998666677788899


Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050          225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV  304 (408)
Q Consensus       225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~  304 (408)
                      .++.++.++ ..++..+...|+.+|.+|+.++...+.+.+.+.+..|..++..++..++..+..++.+++.         
T Consensus       120 l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~---------  189 (503)
T PF10508_consen  120 LLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIAS---------  189 (503)
T ss_pred             HHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHh---------
Confidence            999999998 6688899999999999999888888888888889999999988788899999999999987         


Q ss_pred             HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                              .+++....+.+.|+++.++..+.++|.-++.+++.+|..|+..+.+...+.+.|+++.|.+++....
T Consensus       190 --------~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~  256 (503)
T PF10508_consen  190 --------HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSE  256 (503)
T ss_pred             --------cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccc
Confidence                    6777788888999999999999999999999999999999999999999999999999999987553

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=1.1e-09  Score=104.81  Aligned_cols=187  Identities=19%  Similarity=0.170  Sum_probs=166.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050          151 SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS  230 (408)
Q Consensus       151 s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv  230 (408)
                      +.+.+-++.|..-|.-++.+=+|...++..||+.+++..++ +.+..+|..|+++|+..+.++|..|..+++.|+.+.|+
T Consensus        94 s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~-~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLE-NSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhc-CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            56778889999999999998899999999999999999888 47899999999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050          231 TTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIANFAKCESRAATQVRFI  307 (408)
Q Consensus       231 ~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~  307 (408)
                      ..+..+.+.+++..|+.+++++- .++..+..+...+|...|...+.+  .+...++.++..+.+|..            
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~------------  240 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ------------  240 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH------------
Confidence            99987677788899999999998 888999999999999999999977  567788999999999997            


Q ss_pred             hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                           .+......+...|....++.+..+.+.+++..+..++..+...
T Consensus       241 -----~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  241 -----EDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             -----hhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence                 5566666666777777788888888999999999999887765

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=3e-10  Score=108.48  Aligned_cols=177  Identities=21%  Similarity=0.207  Sum_probs=156.3

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHH
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDET  197 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~  197 (408)
                      .+.-++.+-.+-+|..+++.-||.+.++..+++.+..+|..|+++|+..+. +|..++.+++.||+++|+..+.++.+.+
T Consensus       103 ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~  182 (342)
T KOG2160|consen  103 ALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNT  182 (342)
T ss_pred             HHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCch
Confidence            355566666777888899999999999999999999999999999999988 8999999999999999999999877888


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050          198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                      ++..|+.|+++|-.+++..+..+...+|...|...+.+. .++.+++.++..+.+|. .+......+...+....+..+.
T Consensus       183 ~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~  262 (342)
T KOG2160|consen  183 VRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQRVLENLI  262 (342)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHh
Confidence            999999999999999999999999999999999998543 67889999999999998 6666677777778888888888


Q ss_pred             cCCCHHHHHHHHHHHHHhhc
Q 041050          276 RCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       276 ~~~~~~v~~~a~~aL~nL~~  295 (408)
                      .+.+.++...+..++..+..
T Consensus       263 ~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  263 SSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hccchhhhHHHHHHHHHHHH
Confidence            88889999888887777664

>PRK09687 putative lyase; Provisional

Probab=99.25  E-value=4.2e-10  Score=107.44  Aligned_cols=186  Identities=15%  Similarity=0.178  Sum_probs=91.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.|+.+|.+++..+|..|+++|..+..          ...++.+..++. ++++.+|..|+++|+.|... +..    
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~----------~~~~~~l~~ll~-~~d~~vR~~A~~aLg~lg~~-~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG----------QDVFRLAIELCS-SKNPIERDIGADILSQLGMA-KRC----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc----------chHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCC-ccc----
Confidence            35555566666666666666666555432          222444445444 34555666666666665443 111    


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHH--------------------------HhcccHHHHHH
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKL--------------------------RSEGGIRALLG  273 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i--------------------------~~~g~l~~L~~  273 (408)
                       ....++.|..++.+++++.|+..++.+|++++.... ....+                          .+..+++.|+.
T Consensus        88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~  166 (280)
T PRK09687         88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN  166 (280)
T ss_pred             -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence             112344454443345555566666666665542111 00000                          01123344444


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          274 MVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       274 lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                      ++.+++++|+..|+.+|+.+..                 +         ...+++.|+..+.+.+..||..|+++|+.+.
T Consensus       167 ~L~d~~~~VR~~A~~aLg~~~~-----------------~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        167 LLKDPNGDVRNWAAFALNSNKY-----------------D---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             HhcCCCHHHHHHHHHHHhcCCC-----------------C---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence            4444444444444444444421                 0         1135566666666667777777777766643


Q ss_pred             cCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          354 QHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       354 ~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      ..          .+++.|++.+.++.
T Consensus       221 ~~----------~av~~Li~~L~~~~  236 (280)
T PRK09687        221 DK----------RVLSVLIKELKKGT  236 (280)
T ss_pred             Ch----------hHHHHHHHHHcCCc
Confidence            21          35777777777543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.24  E-value=3.8e-10  Score=109.22  Aligned_cols=224  Identities=16%  Similarity=0.227  Sum_probs=165.8

Q ss_pred             HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHh
Q 041050          137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANL  209 (408)
Q Consensus       137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nL  209 (408)
                      +..+.++.|.+..+|++.++..+.+++|+|+++ +.++|..+.+.||-+.++.+|+..      .+.+....+.+.|.|.
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny  163 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY  163 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence            445667888888899999999999999999999 899999999999977777766531      1356778889999999


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHHhh---------------------------------------------cCCCHHHHHH
Q 041050          210 AMNAEANQELIMAQGGISLLSTTAA---------------------------------------------DAEDPQTLRM  244 (408)
Q Consensus       210 a~~~~~~~~~i~~~g~i~~Lv~lL~---------------------------------------------~~~~~~v~~~  244 (408)
                      ..+++..+...++.|+++.|..++-                                             ....|++..+
T Consensus       164 ~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM  243 (604)
T KOG4500|consen  164 ILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEM  243 (604)
T ss_pred             hCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhH
Confidence            9998999999999999986654321                                             1123445555


Q ss_pred             HHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC-CC----H---HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChh
Q 041050          245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC-GH----P---DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS  316 (408)
Q Consensus       245 a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~-~~----~---~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~  316 (408)
                      +...++..+.|+..+-.+.+.|.+..+..+++. ++    .   ...+.++....-|.                 .|++.
T Consensus       244 ~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlll-----------------tGDeS  306 (604)
T KOG4500|consen  244 IFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLL-----------------TGDES  306 (604)
T ss_pred             HHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhh-----------------cCchH
Confidence            566666666666666666666666666666643 11    1   11122222222222                 26666


Q ss_pred             hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhc
Q 041050          317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD  377 (408)
Q Consensus       317 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~  377 (408)
                      -+....+..++..++..+.+.+.+....+..+|+|++..+++...+++.|.+..|+.++.-
T Consensus       307 Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  307 MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence            5554444448999999999999999999999999999999999999999999999998864

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.23  E-value=1.6e-09  Score=112.01  Aligned_cols=197  Identities=15%  Similarity=0.105  Sum_probs=163.8

Q ss_pred             HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          138 EQVGLHKILSLLESEDANVRIHAVKVVANLAAEEAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      ..+..+.+...|.++++.+|..+++.|.+++.+++. ...+.+.+.++.++.++. +++..+...|+.+|.+|+.+ +..
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~-~~d~~Va~~A~~~L~~l~~~-~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLR-DPDLSVAKAAIKALKKLASH-PEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHc-CCcHHHHHHHHHHHHHHhCC-chh
Confidence            344567888999999999999999999999885544 555666777999999998 57899999999999999998 778


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      .+.++..++++.|..++.. .+..++..+..++.+++ .+++....+.+.|.++.++.-+.++|.-++.+|+..|..|+.
T Consensus       153 ~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~  231 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE  231 (503)
T ss_pred             HHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc
Confidence            8889899999999999844 46678889999999998 788888888999999999999999999999999999999994


Q ss_pred             cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CH---HHHHH-HHHHHHHHccC
Q 041050          296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AA---PIRRH-IELALCHLAQH  355 (408)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~---~v~~~-a~~aL~~La~~  355 (408)
                                        ++.+...+.+.|+++.|+.++.+.  ++   .+... .....++++..
T Consensus       232 ------------------~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~  279 (503)
T PF10508_consen  232 ------------------TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV  279 (503)
T ss_pred             ------------------ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence                              677778889999999999998654  22   12222 33566777774

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PRK09687 putative lyase; Provisional

Probab=99.16  E-value=3.3e-09  Score=101.35  Aligned_cols=198  Identities=14%  Similarity=0.085  Sum_probs=134.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-------
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-------  214 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------  214 (408)
                      ++.+..++.++++.+|..|+++|+.|...+..     ....++.|..++..++++.||..|+.+|++++....       
T Consensus        56 ~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~  130 (280)
T PRK09687         56 FRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIV  130 (280)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHH
Confidence            56666777788888888888888887553221     112356666664445677777777777777753210       


Q ss_pred             ------------hhHHHHH-------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh
Q 041050          215 ------------ANQELIM-------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       215 ------------~~~~~i~-------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                                  ..|...+       ...+++.|+.+| .++++.++..++.+|+++..+        ....++.|+.++
T Consensus       131 ~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L  201 (280)
T PRK09687        131 EQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLL-KDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAML  201 (280)
T ss_pred             HHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHh-cCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHh
Confidence                        1111100       112456677776 456667777777777776321        124567799999


Q ss_pred             cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      .+++++|+..|+++|+.+..                            ..++|.|++.+.+++  ++..++.+|+.+...
T Consensus       202 ~D~~~~VR~~A~~aLg~~~~----------------------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        202 QDKNEEIRIEAIIGLALRKD----------------------------KRVLSVLIKELKKGT--VGDLIIEAAGELGDK  251 (280)
T ss_pred             cCCChHHHHHHHHHHHccCC----------------------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH
Confidence            99999999999999999742                            358999999999866  677899999888774


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                                .+++.|.+++....+..++..|.+.++.
T Consensus       252 ----------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 ----------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             ----------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                      2589999999855555677777776653

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=2.6e-08  Score=97.85  Aligned_cols=285  Identities=14%  Similarity=0.098  Sum_probs=208.0

Q ss_pred             HhhhHHHHHHHHhhhhhhhHHHHHHHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHH
Q 041050           76 KRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDAN  155 (408)
Q Consensus        76 ~~~~~~~~~~l~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~  155 (408)
                      ++++-+++..++.++.-+..-.++    +.+           ....|+-++...-..--++.....|.-|+..|.-.+.+
T Consensus       255 netLk~e~dr~~kklk~~~~KQeq----LLr-----------va~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr~n~~  319 (791)
T KOG1222|consen  255 NETLKEEIDRLNKKLKTAIRKQEQ----LLR-----------VAVYLLLNLAEDISVELKMRRKNIVAMLVKALDRSNSS  319 (791)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHH----HHH-----------HHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcccchH
Confidence            457888888888887655433333    222           14567777766555556788888899999999988999


Q ss_pred             HHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhc
Q 041050          156 VRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAAD  235 (408)
Q Consensus       156 v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~  235 (408)
                      +.......|..|+.-.+|+..+.+.|.+.+|+.++. ..+++++...+..+.|++.+ ..++.+++..|-+|.|..++.+
T Consensus       320 Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp-~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~  397 (791)
T KOG1222|consen  320 LLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFP-IQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDS  397 (791)
T ss_pred             HHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcC-CCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCC
Confidence            999999999999999999999999999999999998 47899999999999999999 9999999999999999999944


Q ss_pred             CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhh--------hhHHHh
Q 041050          236 AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRA--------ATQVRF  306 (408)
Q Consensus       236 ~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~--------~~~~~~  306 (408)
                      ..   -.-.|...+..++.++..+..+.-..+++.++..+ ...+..|-.......-||+.+..++        ..-+..
T Consensus       398 d~---~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~  474 (791)
T KOG1222|consen  398 DT---KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLME  474 (791)
T ss_pred             cc---cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHH
Confidence            33   33357788999999999999999999999999866 4445555444444445666533322        111110


Q ss_pred             -h-----------hhhccCChh-hHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHH
Q 041050          307 -I-----------RCTATGVKS-GRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH-EVNAREMISGGALWEL  371 (408)
Q Consensus       307 -~-----------i~~~~~~~~-~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L  371 (408)
                       +           +-+...++. .+..+++  .+..|...+++. +...-.++..++.||+-. -+....+-+...+|.+
T Consensus       475 ra~k~~D~lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~  552 (791)
T KOG1222|consen  475 RAIKSRDLLLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWM  552 (791)
T ss_pred             HHhcccchHHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHH
Confidence             0           111111221 3444454  566666666655 445677888999998875 4555556689999999


Q ss_pred             HHHHhcCCHHH
Q 041050          372 VRISRDCSRED  382 (408)
Q Consensus       372 ~~ll~~~~~~~  382 (408)
                      ...+..+-+++
T Consensus       553 k~~L~pga~ed  563 (791)
T KOG1222|consen  553 KTQLQPGADED  563 (791)
T ss_pred             HHhhcCCccch
Confidence            99888665443

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.10  E-value=4.3e-09  Score=102.87  Aligned_cols=251  Identities=17%  Similarity=0.201  Sum_probs=182.0

Q ss_pred             HHHhcCHHHHHHhhcCCCH--HHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050          136 LFEQVGLHKILSLLESEDA--NVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA  213 (408)
Q Consensus       136 l~~~~~v~~Ll~lL~s~~~--~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  213 (408)
                      +-..||++.|+.++.+++.  .+|..++++|-.+.. .+|++.++..| +..++.+-+..++++..+..+++|.|+..++
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHS  253 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHS  253 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhh
Confidence            4445789999999998775  459999999987654 56888888876 7778887776678899999999999999999


Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          214 EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       214 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                      ++....+++.||+..++--. +..+|.++++++-+|+|++  +.-..+..+++..+...|..+..+.|.-++.+||-+++
T Consensus       254 eet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~  332 (832)
T KOG3678|consen  254 EETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVA  332 (832)
T ss_pred             HHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHh
Confidence            99999999999999876554 5577999999999999998  77788999999999999999998888889999999999


Q ss_pred             Hhhccchhh--hhHHHhh------------hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc--C
Q 041050          292 NFAKCESRA--ATQVRFI------------RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ--H  355 (408)
Q Consensus       292 nL~~~~~~~--~~~~~~~------------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~--~  355 (408)
                      .|+.+ .+.  -..-+|+            =++|+.+..--..-.....+..|+.+|.+.--+.+--++.-++.=+.  .
T Consensus       333 vlat~-KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIKs  411 (832)
T KOG3678|consen  333 VLATN-KEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIKS  411 (832)
T ss_pred             hhhhh-hhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHHH
Confidence            99852 111  0111121            13344332221122223457788888886655555444444443332  1


Q ss_pred             chhHHH-HHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          356 EVNARE-MISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       356 ~~~~~~-l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      ..+... +-+-|+|..|.++.. +.++...+.|.++|
T Consensus       412 ~Q~K~kVFseIGAIQaLKevaS-S~d~vaakfAseAL  447 (832)
T KOG3678|consen  412 LQGKTKVFSEIGAIQALKEVAS-SPDEVAAKFASEAL  447 (832)
T ss_pred             hccchhHHHHHHHHHHHHHHhc-CchHHHHHHHHHHH
Confidence            233333 448999999999888 44555555555444

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.07  E-value=1.3e-08  Score=98.96  Aligned_cols=222  Identities=17%  Similarity=0.166  Sum_probs=162.2

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHHcC-CchhHHHHHHh------CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050          142 LHKILSLLE--SEDANVRIHAVKVVANLAA-EEANQEKIVEA------GGLSSLLMLLRSFEDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       142 v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~------g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  212 (408)
                      ...++++|+  +.++++..+.+..+..+.. ++.....+.+.      .-..+++.++.. +|..++..|+.+|..|...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-NDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHc
Confidence            556667776  3789999999999998877 55555555441      247888998874 6899999999999999887


Q ss_pred             ChhhHHHHHhcCcHHHHHHHhhcC---CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh------c-CCCHHH
Q 041050          213 AEANQELIMAQGGISLLSTTAADA---EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV------R-CGHPDV  282 (408)
Q Consensus       213 ~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL------~-~~~~~v  282 (408)
                      .+ .+..-...+.++.++..+.+.   ++.++...++.+|.+|...+..|..+.+.|+++.++.++      . ..+..+
T Consensus       136 ~~-~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GP-KRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT-T--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CC-ccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            33 333332255678888777542   334566899999999999999999999999999999999      2 345678


Q ss_pred             HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCch--hH
Q 041050          283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHEV--NA  359 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~--~~  359 (408)
                      +.+++.+++-|+                  .+++....+.+.+++|.|+..++.. ..+|.+-+..++.||.....  +.
T Consensus       215 ~Y~~ll~lWlLS------------------F~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~  276 (312)
T PF03224_consen  215 QYQALLCLWLLS------------------FEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNI  276 (312)
T ss_dssp             HHHHHHHHHHHT------------------TSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHH
T ss_pred             HHHHHHHHHHHh------------------cCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHH
Confidence            999999999999                  4788888899999999999999754 67899999999999999865  88


Q ss_pred             HHHHhCCcHHHHHHHHhcC-CHHHH
Q 041050          360 REMISGGALWELVRISRDC-SREDI  383 (408)
Q Consensus       360 ~~l~~~g~i~~L~~ll~~~-~~~~~  383 (408)
                      ..|+..|+++.+..|.... +++++
T Consensus       277 ~~mv~~~~l~~l~~L~~rk~~Dedl  301 (312)
T PF03224_consen  277 ELMVLCGLLKTLQNLSERKWSDEDL  301 (312)
T ss_dssp             HHHHHH-HHHHHHHHHSS--SSHHH
T ss_pred             HHHHHccHHHHHHHHhcCCCCCHHH
Confidence            8999999998888877532 34443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.01  E-value=2.4e-08  Score=99.66  Aligned_cols=209  Identities=15%  Similarity=0.155  Sum_probs=153.5

Q ss_pred             HHHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          144 KILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       144 ~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      -+...+++ .+...+..++..|..|...+..|..+.+.+|++.|+.+|+... +.+++..++-++|-|+.+ +.......
T Consensus       147 ~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~  225 (429)
T cd00256         147 WLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFN-PHAAEVLK  225 (429)
T ss_pred             HHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhcc-HHHHHhhc
Confidence            34445554 3577888899999999999999999999999999999998644 678999999999999999 88888888


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-------hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHH-----
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND-------KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVA-----  287 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-------~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~-----  287 (408)
                      ..+.|+.|+.++..+.-+.+.|.++.++.||...+       .....+++.|.++.+-.+..  -.|+++....-     
T Consensus       226 ~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~  305 (429)
T cd00256         226 RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEE  305 (429)
T ss_pred             cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence            89999999999988888899999999999998422       23445667677664444442  35677654221     


Q ss_pred             --------------------------------------------------HHHHHhhccchhhhhHHHhh---hhhcc-C
Q 041050          288 --------------------------------------------------RGIANFAKCESRAATQVRFI---RCTAT-G  313 (408)
Q Consensus       288 --------------------------------------------------~aL~nL~~~~~~~~~~~~~~---i~~~~-~  313 (408)
                                                                        ..|..+-.. ++....+.=|   ||.|. .
T Consensus       306 L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~-s~d~~~laVAc~Dige~vr~  384 (429)
T cd00256         306 LKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLET-SVDPIILAVACHDIGEYVRH  384 (429)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhc-CCCcceeehhhhhHHHHHHH
Confidence                                                              111111100 0000000000   23332 4


Q ss_pred             ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +|.++..+.+.|+=..+++++.+++++|+.+|..|+..|..
T Consensus       385 ~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         385 YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999987743

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.00  E-value=4e-08  Score=102.03  Aligned_cols=232  Identities=13%  Similarity=0.111  Sum_probs=187.2

Q ss_pred             CCCchHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050          128 GQKAPITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA  205 (408)
Q Consensus       128 ~~~~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a  205 (408)
                      ++++...-+.-..-||.|+.+|+ ..+.+++..|+++|.+|+. -|.....+|+.++||.|+.-|-.-+..++.+.++.|
T Consensus       199 gnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqA  278 (1051)
T KOG0168|consen  199 GNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQA  278 (1051)
T ss_pred             cchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHH
Confidence            33333333333334899999999 4679999999999999998 899999999999999999988756788999999999


Q ss_pred             HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHH
Q 041050          206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVL  283 (408)
Q Consensus       206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~  283 (408)
                      |-.|+..+   -..|.++|++...+..| +--...+++.|+.+.+|+|  ..++--..+++  .+|.|..+|...|....
T Consensus       279 LE~iSR~H---~~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~i  352 (1051)
T KOG0168|consen  279 LEKISRRH---PKAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKPI  352 (1051)
T ss_pred             HHHHHhhc---cHHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchhH
Confidence            99999873   35788999999888776 3334679999999999999  33444445544  69999999999999999


Q ss_pred             HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC----CHHHHHHHHHHHHHHccC-chh
Q 041050          284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE----AAPIRRHIELALCHLAQH-EVN  358 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~----~~~v~~~a~~aL~~La~~-~~~  358 (408)
                      +.++-++..++              |+|...++.-+.+...|.+....+++.-.    +..+..-.+.++..|+.+ +-.
T Consensus       353 es~~ic~~ri~--------------d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~  418 (1051)
T KOG0168|consen  353 ESVCICLTRIA--------------DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLL  418 (1051)
T ss_pred             HHHHHHHHHHH--------------HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHH
Confidence            99998888886              46777888888889999999999988644    445666778899999999 666


Q ss_pred             HHHHHhCCcHHHHHHHHhcCC
Q 041050          359 AREMISGGALWELVRISRDCS  379 (408)
Q Consensus       359 ~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      +..+.+.++...|..++...+
T Consensus       419 ~~tl~k~~I~~~L~~il~g~s  439 (1051)
T KOG0168|consen  419 FRTLLKLDIADTLKRILQGYS  439 (1051)
T ss_pred             HHHHHHhhHHHHHHHHHhccC
Confidence            778889999999999987543

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.91  E-value=4.9e-08  Score=95.03  Aligned_cols=189  Identities=16%  Similarity=0.189  Sum_probs=141.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC---CCHHHHHHHHHHHHHhccCChhhH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF---EDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ...+++.++.++|.-++..|+.+|..|......+..-...+.++.++..+.+.   ++..++..|+.+|.+|... +..|
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R  184 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYR  184 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhH
Confidence            46888899999999999999999999987433333332245678888888742   2445678899999999999 9999


Q ss_pred             HHHHhcCcHHHHHHHh------hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHH
Q 041050          218 ELIMAQGGISLLSTTA------ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGI  290 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL------~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL  290 (408)
                      ..+.+.||++.|+.++      .+.....++-.++-++|-|+.+++....+.+.+.++.|+.+++ +....|.+-+..++
T Consensus       185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l  264 (312)
T PF03224_consen  185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAIL  264 (312)
T ss_dssp             HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHH
Confidence            9999999999999999      4556678999999999999999999999999999999999995 66788999999999


Q ss_pred             HHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHH
Q 041050          291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIE  346 (408)
Q Consensus       291 ~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~  346 (408)
                      .||...                +.......|+..|+++.+-.+....  |+++.....
T Consensus       265 ~Nl~~~----------------~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~  306 (312)
T PF03224_consen  265 RNLLSK----------------APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLE  306 (312)
T ss_dssp             HHTTSS----------------SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHH
T ss_pred             HHHHhc----------------cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999961                1222677788877777666666443  666665443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.85  E-value=7.9e-08  Score=94.20  Aligned_cols=176  Identities=24%  Similarity=0.355  Sum_probs=146.2

Q ss_pred             HHHHHHhCCHHHHHHHHcCCCC-HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050          174 QEKIVEAGGLSSLLMLLRSFED-ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL  252 (408)
Q Consensus       174 ~~~i~~~g~i~~L~~lL~~~~~-~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL  252 (408)
                      .+.|...||+..|+.++...+- ..++-.|...|-.+..  .+|++.++..| +..++.+....+.++..+.+++.|.|+
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3566678999999999985432 3467778888887766  47889988887 677777766677789999999999999


Q ss_pred             h-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050          253 C-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV  331 (408)
Q Consensus       253 ~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv  331 (408)
                      - ...+..+.++..|++..++-..+..+|++.++|+.+|+|++.                .|-..++..|++..+-+||.
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L----------------~~~~a~qrrmveKr~~EWLF  313 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCAL----------------HGGQAVQRRMVEKRAAEWLF  313 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhh----------------hchhHHHHHHHHhhhhhhhh
Confidence            8 777888999999999999999998899999999999999875                36778899999999999999


Q ss_pred             HhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcH
Q 041050          332 QNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL  368 (408)
Q Consensus       332 ~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i  368 (408)
                      .+..+.+.-+|.+||.+++.++++.+--..+-++|-+
T Consensus       314 ~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~Tl  350 (832)
T KOG3678|consen  314 PLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTL  350 (832)
T ss_pred             hhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccch
Confidence            9999998889999999999999986654444444433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.82  E-value=5.7e-08  Score=80.43  Aligned_cols=131  Identities=17%  Similarity=0.215  Sum_probs=111.4

Q ss_pred             HHHHHH-hhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILS-LLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~-lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ++.|+. +-...+.+.+++...-|+|.+.+|.|...+.+...+...+.-|. .++..+...+++.|+|+|.+ +.+.+.|
T Consensus        18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~-e~ne~LvefgIgglCNlC~d-~~n~~~I   95 (173)
T KOG4646|consen   18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE-EQNELLVEFGIGGLCNLCLD-KTNAKFI   95 (173)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh-cccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence            556663 33478899999999999999999999999999999999999998 57999999999999999999 9999999


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                      ++.+|+|.++..+ +++.+.+.-.++.++..|+ ++...+..+.....+..+...-
T Consensus        96 ~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~  150 (173)
T KOG4646|consen   96 REALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWR  150 (173)
T ss_pred             HHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHH
Confidence            9999999998887 4555667778999999999 7778888887765665554443

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.76  E-value=8.8e-08  Score=79.35  Aligned_cols=149  Identities=13%  Similarity=0.148  Sum_probs=121.9

Q ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050          182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK  261 (408)
Q Consensus       182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~  261 (408)
                      -++.|+.-.....+.+.+.....-|+|.+.+ |.|-..+.+.+++...+..| +.+++.+.....+.|+|+|.++.+...
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccChHHHHH
Confidence            3667777776667889999999999999999 99999999999999999998 567788999999999999999999999


Q ss_pred             HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050          262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI  341 (408)
Q Consensus       262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v  341 (408)
                      |++.+|++.++..+.++...+...++.++..|+.                 |....+..+....++..+...-.+...+.
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~-----------------~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~  157 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEF-----------------GERTERDELLSPAVVRTVQRWRESKSHDE  157 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC-----------------cccchhHHhccHHHHHHHHHHHHHhhHHH
Confidence            9999999999999998888889999999999987                 67777777776556655555443444444


Q ss_pred             HHHHHHHH
Q 041050          342 RRHIELAL  349 (408)
Q Consensus       342 ~~~a~~aL  349 (408)
                      +.-|-.++
T Consensus       158 rnLa~~fl  165 (173)
T KOG4646|consen  158 RNLASAFL  165 (173)
T ss_pred             HHHHHHHH
Confidence            44444333

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.74  E-value=4.1e-07  Score=88.50  Aligned_cols=208  Identities=16%  Similarity=0.137  Sum_probs=152.7

Q ss_pred             Hhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHH-cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050          147 SLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL-RSFEDETIRRVAAGAIANLAMNAEANQELIMAQG  224 (408)
Q Consensus       147 ~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL-~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g  224 (408)
                      ..++ +.+.+-...+++.|-.+...++.|..++..+|+..++..+ ++..+.+++...+.++|-|+.+ |...+.+...+
T Consensus       163 ~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~  241 (442)
T KOG2759|consen  163 EQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFD  241 (442)
T ss_pred             HHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhcc
Confidence            4444 4777888889999999999999999999999999999999 5446789999999999999999 88888888889


Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc------hhHHHHHhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhh-
Q 041050          225 GISLLSTTAADAEDPQTLRMVAGAIANLC-GND------KLQMKLRSEGGIRALLGMVR--CGHPDVLSQVARGIANFA-  294 (408)
Q Consensus       225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~------~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~-  294 (408)
                      -|+.|..++.++..+.|.|.+++++.|++ ..+      .....++..+.++.+-.+-.  -+|+++....-..-.-|. 
T Consensus       242 li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~  321 (442)
T KOG2759|consen  242 LIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN  321 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            99999999988888899999999999999 332      23344555666665444442  356665542221111111 


Q ss_pred             ------c-------------cchhh-----------------hhHHH-------h--------h-----hhhc-cCChhh
Q 041050          295 ------K-------------CESRA-----------------ATQVR-------F--------I-----RCTA-TGVKSG  317 (408)
Q Consensus       295 ------~-------------~~~~~-----------------~~~~~-------~--------~-----i~~~-~~~~~~  317 (408)
                            .             ++++.                 ..++.       .        +     |+.+ =.+|.+
T Consensus       322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~g  401 (442)
T KOG2759|consen  322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEG  401 (442)
T ss_pred             HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchH
Confidence                  0             01100                 00000       0        0     1221 156899


Q ss_pred             HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          318 RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       318 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      +..+.+.|+=..++.++++++++||.+|..|+..|..+
T Consensus       402 k~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  402 KAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             hHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999877543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.74  E-value=2.1e-06  Score=94.94  Aligned_cols=216  Identities=21%  Similarity=0.198  Sum_probs=117.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.|+..|+++++.+|..|+.+|+.+..          .+.++.|+.+|+ ++++.||..|+.+|..+....+      
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~-D~d~~VR~~Aa~aL~~l~~~~~------  684 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALG-DGAAAVRRAAAEGLRELVEVLP------  684 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhccC------
Confidence            47899999999999999999999988642          446888999997 5788999999999887743201      


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-C------------chhHH----HHHhcccHHHHHHhhcCCCHHHH
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-N------------DKLQM----KLRSEGGIRALLGMVRCGHPDVL  283 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~------------~~~~~----~i~~~g~l~~L~~lL~~~~~~v~  283 (408)
                          ..+.|...| .++++.++..++.+|..+.. +            +..|.    .+...+..+.|..++.++++.|+
T Consensus       685 ----~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR  759 (897)
T PRK13800        685 ----PAPALRDHL-GSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVR  759 (897)
T ss_pred             ----chHHHHHHh-cCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHH
Confidence                123444444 33555566555555554321 0            00010    00011122334445555555555


Q ss_pred             HHHHHHHHHhhccchhhhhHHHhhhhhcc--CChhhHHHHH----hcC----cHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          284 SQVARGIANFAKCESRAATQVRFIRCTAT--GVKSGRSLLI----EDG----ALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~--~~~~~~~~i~----~~g----~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                      ..++.+|..+..........    +..+.  .++..|...+    ..|    +++.++..+.++++.||..|+.+|..+.
T Consensus       760 ~~aa~aL~~~~~~~~~~~~~----L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~  835 (897)
T PRK13800        760 IAVAKGLATLGAGGAPAGDA----VRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA  835 (897)
T ss_pred             HHHHHHHHHhccccchhHHH----HHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence            55555555554211100000    00111  1112222111    111    2234555566566666666666665543


Q ss_pred             cCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          354 QHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       354 ~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      .          ...++.|+.++.++ +.++|..|.+.|..
T Consensus       836 ~----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~  864 (897)
T PRK13800        836 A----------DVAVPALVEALTDP-HLDVRKAAVLALTR  864 (897)
T ss_pred             c----------cchHHHHHHHhcCC-CHHHHHHHHHHHhc
Confidence            2          22457888888754 45577777766644

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.71  E-value=6.6e-07  Score=87.18  Aligned_cols=236  Identities=14%  Similarity=0.057  Sum_probs=174.9

Q ss_pred             CCCchHHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcC-C-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHH
Q 041050          128 GQKAPITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAA-E-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA  203 (408)
Q Consensus       128 ~~~~~~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~  203 (408)
                      +.++-..++++.|.++.|...+.  ..+.+..+.-.....||.. . +-......+....-.+++++.+...++++....
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            44555567888888888887765  4566666666666666655 2 223444445555677888887666778899899


Q ss_pred             HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC-------CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050          204 GAIANLAMNAEANQELIMAQGGISLLSTTAADAE-------DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       204 ~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                      .+++-.+.+ +..+-.+++.|-+.-+++++..-.       .......++....-|. +|+.-+...-....++.+.+.+
T Consensus       246 eila~~aen-d~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  246 EILAKAAEN-DLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHHHHHhcC-cceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHh
Confidence            999999998 999999999998888888875411       1223334445555454 5555444443333889999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-----CCHHHHHHHHHHHH
Q 041050          276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-----EAAPIRRHIELALC  350 (408)
Q Consensus       276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~v~~~a~~aL~  350 (408)
                      +++|.+.+....-+++||++                  +++..-.+++.|.+..|+.++..     ++-+++..++.||.
T Consensus       325 ~S~d~~l~t~g~LaigNfaR------------------~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALR  386 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFAR------------------RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALR  386 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhc------------------cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHH
Confidence            99999999999999999995                  67777788999999999998843     35566777899999


Q ss_pred             HHccCchhHHHHHhCCcHHHHHHHHhcCCHHH
Q 041050          351 HLAQHEVNAREMISGGALWELVRISRDCSRED  382 (408)
Q Consensus       351 ~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~  382 (408)
                      |++-...++..++.+|.++.+...+...++..
T Consensus       387 nl~IPv~nka~~~~aGvteaIL~~lk~~~ppv  418 (604)
T KOG4500|consen  387 NLMIPVSNKAHFAPAGVTEAILLQLKLASPPV  418 (604)
T ss_pred             hccccCCchhhccccchHHHHHHHHHhcCCcc
Confidence            99999999999999999999988887665543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=9e-07  Score=92.26  Aligned_cols=217  Identities=14%  Similarity=0.126  Sum_probs=170.2

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHH-HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          142 LHKILSLLES-EDANVRIHAVKVVA-NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       142 v~~Ll~lL~s-~~~~v~~~A~~aL~-nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      +.+|++-|.. .++..+..|+.-|+ +|+. +++.-.-+.-.-.+|.|+.+|+...+.++...|+.||.+|+.-.|.-..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a  248 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA  248 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence            5677777764 47888877777776 5555 4443333333336899999999777899999999999999998899999


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES  298 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~  298 (408)
                      .+++.+.||.|+.-|..-+..++-++++.+|-.|+...  -..+.+.|++.+.+..+.-=...+++.|..+.+|+|..- 
T Consensus       249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi-  325 (1051)
T KOG0168|consen  249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI-  325 (1051)
T ss_pred             eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            99999999999977766777889999999999998321  245678899999999998777789999999999998621 


Q ss_pred             hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC----chhHHHHHhCCcHHHHHHH
Q 041050          299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH----EVNAREMISGGALWELVRI  374 (408)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~----~~~~~~l~~~g~i~~L~~l  374 (408)
                                    ..++ -.-+.  .++|.|..++...+....+.++.+++.++..    ++....++..|.+....+|
T Consensus       326 --------------~sd~-f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qL  388 (1051)
T KOG0168|consen  326 --------------RSDE-FHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQL  388 (1051)
T ss_pred             --------------CCcc-chHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHH
Confidence                          1111 12233  4899999999999999999999999998864    4556778899999999998


Q ss_pred             HhcC
Q 041050          375 SRDC  378 (408)
Q Consensus       375 l~~~  378 (408)
                      +...
T Consensus       389 lsvt  392 (1051)
T KOG0168|consen  389 LSVT  392 (1051)
T ss_pred             HhcC
Confidence            8754

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.70  E-value=9.8e-07  Score=97.56  Aligned_cols=203  Identities=20%  Similarity=0.161  Sum_probs=132.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      .+.+...|.++++.+|..|+.+|..+...           ....|+..|. ++++.+|..|+.+|..+..          
T Consensus       686 ~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-----------~~~~l~~~L~-D~d~~VR~~Av~aL~~~~~----------  743 (897)
T PRK13800        686 APALRDHLGSPDPVVRAAALDVLRALRAG-----------DAALFAAALG-DPDHRVRIEAVRALVSVDD----------  743 (897)
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhhccC-----------CHHHHHHHhc-CCCHHHHHHHHHHHhcccC----------
Confidence            36677889999999999999999886431           2345666777 4678888888888876521          


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA  301 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~  301 (408)
                          .+.|..++ .++++.|+..++.+|..+....        ...++.|..+++++++.|+..|+.+|+++.. .....
T Consensus       744 ----~~~l~~~l-~D~~~~VR~~aa~aL~~~~~~~--------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~-~~~~~  809 (897)
T PRK13800        744 ----VESVAGAA-TDENREVRIAVAKGLATLGAGG--------APAGDAVRALTGDPDPLVRAAALAALAELGC-PPDDV  809 (897)
T ss_pred             ----cHHHHHHh-cCCCHHHHHHHHHHHHHhcccc--------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC-cchhH
Confidence                23355555 5567788888888887775321        1225667777777777777777777777752 21111


Q ss_pred             hHHHhhhhhccCChhhHHHHH-------hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHH
Q 041050          302 TQVRFIRCTATGVKSGRSLLI-------EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRI  374 (408)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~~i~-------~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~l  374 (408)
                      ..+..++-.  .+...|....       ....++.|+.++.+++..||..|+++|..+..++ .        ..+.|...
T Consensus       810 ~~l~~aL~d--~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~-~--------a~~~L~~a  878 (897)
T PRK13800        810 AAATAALRA--SAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP-A--------ARDALTTA  878 (897)
T ss_pred             HHHHHHhcC--CChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH-H--------HHHHHHHH
Confidence            111100000  1122222222       2356789999999999999999999999973222 2        36777777


Q ss_pred             HhcCCHHHHHHHHHHHHh
Q 041050          375 SRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       375 l~~~~~~~~~~~A~~~L~  392 (408)
                      +. .++.+++..|.+.|.
T Consensus       879 l~-D~d~~Vr~~A~~aL~  895 (897)
T PRK13800        879 LT-DSDADVRAYARRALA  895 (897)
T ss_pred             Hh-CCCHHHHHHHHHHHh
Confidence            77 446668888888775

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.69  E-value=5.1e-06  Score=84.89  Aligned_cols=152  Identities=18%  Similarity=0.199  Sum_probs=118.7

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050          147 SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG  225 (408)
Q Consensus       147 ~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~  225 (408)
                      ......+.+.+..|+-.+.+++. -...+.-.-...++.+|++++. .++.-+...++++|+|+.++....+..+...||
T Consensus       384 ~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~-dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng  462 (678)
T KOG1293|consen  384 CLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM-DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG  462 (678)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh-CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence            33346778888888888888765 3334444445667899999996 466778888999999999998999999999999


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhH-HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQ-MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA  301 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~-~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~  301 (408)
                      |..+..++ .+.++.++..+.|+|.++. .+++-. ......=+-..|+.+...+++.|+++|...++||+ |+++..
T Consensus       463 Id~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~-c~~~~s  538 (678)
T KOG1293|consen  463 IDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT-CNSRKS  538 (678)
T ss_pred             HHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh-cCcHHH
Confidence            99999997 6788899999999999999 333333 23333334455666778999999999999999999 765554

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.65  E-value=6.5e-06  Score=82.47  Aligned_cols=243  Identities=14%  Similarity=0.138  Sum_probs=171.9

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHcC-CchhHHHHHHh-----CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          142 LHKILSLLE-SEDANVRIHAVKVVANLAA-EEANQEKIVEA-----GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~-----g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      +..++.+++ ..++++....+..+.-|.. ++.....+.+.     .-..+++.+|.. +|..+...|+.+|+.+...++
T Consensus        55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~-~d~~i~~~a~~iLt~l~~~~~  133 (429)
T cd00256          55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNR-QDQFIVHMSFSILAKLACFGL  133 (429)
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcC-CchhHHHHHHHHHHHHHhcCc
Confidence            667778887 6778888888888887776 44444555554     346788888874 677889999999999876533


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHH
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIAN  292 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~n  292 (408)
                      .+.......--++.|...+....+.+....++.++.+|...+..|..+.+.++++.|+.+|+.  .+..++.+++.+++-
T Consensus       134 ~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWl  213 (429)
T cd00256         134 AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWL  213 (429)
T ss_pred             cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            321111111122345566644445677778889999999999999999999999999999964  356899999999999


Q ss_pred             hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCc-------hhHHHHHh
Q 041050          293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHE-------VNAREMIS  364 (408)
Q Consensus       293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~-------~~~~~l~~  364 (408)
                      |+.                  +++....+...+.++.|+++++.. -.++.+-++.++.|+...+       .....|++
T Consensus       214 LSF------------------~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~  275 (429)
T cd00256         214 LTF------------------NPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQ  275 (429)
T ss_pred             Hhc------------------cHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHH
Confidence            995                  455666677789999999999765 5678888999999998742       34566778


Q ss_pred             CCcHHHHHHHHhcC-CHHHHH----HHHH------HHHhccHhhHHHHHh
Q 041050          365 GGALWELVRISRDC-SREDIR----SLAH------RTLSSSLTFRAEMRR  403 (408)
Q Consensus       365 ~g~i~~L~~ll~~~-~~~~~~----~~A~------~~L~~~~~~~~~~~~  403 (408)
                      .|..+.+..|.... +++|+.    .+-.      +.+++-....+|+..
T Consensus       276 ~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s  325 (429)
T cd00256         276 CKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS  325 (429)
T ss_pred             cChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc
Confidence            88888776666432 333322    1111      345555555666654

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=9e-06  Score=84.46  Aligned_cols=252  Identities=18%  Similarity=0.178  Sum_probs=185.2

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      +-|..++..+...|-.||..|+..+.++-.  .++.+..+.. .-||.+|+.+|.+ ..+.+|..++-.|..|..+++..
T Consensus       122 d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D-srE~IRNe~iLlL~eL~k~n~~I  200 (970)
T KOG0946|consen  122 DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD-SREPIRNEAILLLSELVKDNSSI  200 (970)
T ss_pred             hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh-hhhhhchhHHHHHHHHHccCchH
Confidence            458889999999999999999999998865  6677777766 4579999999984 46779999999999999998889


Q ss_pred             HHHHHhcCcHHHHHHHhhcCC--CH-HHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc---CCCHHH-----H-
Q 041050          217 QELIMAQGGISLLSTTAADAE--DP-QTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR---CGHPDV-----L-  283 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~--~~-~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~---~~~~~v-----~-  283 (408)
                      |+.++-.+.+..|+.++....  |. -|..-++..|-||- .|..|+..+.+.+.++.|..+|.   ..|.++     + 
T Consensus       201 QKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qr  280 (970)
T KOG0946|consen  201 QKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQR  280 (970)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHH
Confidence            999999999999999986322  33 36777888888998 88899999999999999998884   233211     1 


Q ss_pred             ----HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccC-c
Q 041050          284 ----SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQH-E  356 (408)
Q Consensus       284 ----~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~-~  356 (408)
                          ..++.+++.+..-+....           ....++.++...+++..|+..+-++  ..+|+..+..++.++..+ .
T Consensus       281 v~Nv~~~Lqivr~lVsP~Nt~~-----------~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~  349 (970)
T KOG0946|consen  281 VQNVIEALQIVRSLVSPGNTSS-----------ITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNA  349 (970)
T ss_pred             HHHHHHHHHHHHHhcCCCCcHH-----------HHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhch
Confidence                123355555543111100           1234557888899999999977554  788999999999999887 4


Q ss_pred             hhHHHHHh----C------CcHHHHHHHHhcCCHHHHHHHHHHHHhccHhhHHHHHh
Q 041050          357 VNAREMIS----G------GALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRR  403 (408)
Q Consensus       357 ~~~~~l~~----~------g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~~~~~~~  403 (408)
                      .+...+.+    .      ..+-.++.+..+.++-+.|-++..++.++..-..+.+|
T Consensus       350 ~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~  406 (970)
T KOG0946|consen  350 RNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQR  406 (970)
T ss_pred             HHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHH
Confidence            44444442    1      12334455556666777887777887777665555544

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.47  E-value=0.00019  Score=74.99  Aligned_cols=252  Identities=15%  Similarity=0.131  Sum_probs=186.5

Q ss_pred             HHHHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCch-----------------hHHHHHH-hCCHHHHHHHHcC
Q 041050          133 ITKLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAAEEA-----------------NQEKIVE-AGGLSSLLMLLRS  192 (408)
Q Consensus       133 ~~~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~-----------------~~~~i~~-~g~i~~L~~lL~~  192 (408)
                      -+..+...|++++++.|.  ..|+++...++..+.++...++                 ..+.++. .+-|..|+..+. 
T Consensus        54 YR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e-  132 (970)
T KOG0946|consen   54 YREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE-  132 (970)
T ss_pred             HHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH-
Confidence            477888889999999998  5789999999999999987331                 1233443 455889999998 


Q ss_pred             CCCHHHHHHHHHHHHHhccC-ChhhHHHHHh-cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHH
Q 041050          193 FEDETIRRVAAGAIANLAMN-AEANQELIMA-QGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIR  269 (408)
Q Consensus       193 ~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~  269 (408)
                      ..|-.||..++..+.+|-.. .+..|+.+.. --||..||.+|. +..+.+|-.++-.|.-|. .|+..++.+.=.+++.
T Consensus       133 ~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~-DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFe  211 (970)
T KOG0946|consen  133 EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLR-DSREPIRNEAILLLSELVKDNSSIQKLVAFENAFE  211 (970)
T ss_pred             hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHh-hhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHH
Confidence            46889999999999887554 3566776654 568999999995 455688999999999999 7777777777788999


Q ss_pred             HHHHhhcCC---C-HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC---C----
Q 041050          270 ALLGMVRCG---H-PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE---A----  338 (408)
Q Consensus       270 ~L~~lL~~~---~-~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---~----  338 (408)
                      .|+.++...   | .-|...|+..|-||-.                 .+..++..|.+.+.+|.|.++|.-.   +    
T Consensus       212 rLfsIIeeEGg~dGgIVveDCL~ll~NLLK-----------------~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~  274 (970)
T KOG0946|consen  212 RLFSIIEEEGGLDGGIVVEDCLILLNNLLK-----------------NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVF  274 (970)
T ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHHHHh-----------------hCcchhhHHhccccHHHHHhhcCcccccCcccc
Confidence            999999532   3 3578899999999998                 8899999999999999999888642   2    


Q ss_pred             -HH---H--HHHHHHHHHHHccC-------chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHH----HHHhccHhhHHH
Q 041050          339 -AP---I--RRHIELALCHLAQH-------EVNAREMISGGALWELVRISRDC-SREDIRSLAH----RTLSSSLTFRAE  400 (408)
Q Consensus       339 -~~---v--~~~a~~aL~~La~~-------~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~A~----~~L~~~~~~~~~  400 (408)
                       +.   |  ...+..++..+..-       ..+.+.+.+.+++..|..++-++ -+.++...+.    ...-.+-.-+.+
T Consensus       275 ~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~  354 (970)
T KOG0946|consen  275 GWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDE  354 (970)
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHH
Confidence             11   1  22355566666643       13445777999999999998876 3555554444    333344444444


Q ss_pred             HHh
Q 041050          401 MRR  403 (408)
Q Consensus       401 ~~~  403 (408)
                      +.+
T Consensus       355 F~~  357 (970)
T KOG0946|consen  355 FAD  357 (970)
T ss_pred             Hhh
Confidence            443

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.36  E-value=8.8e-06  Score=84.67  Aligned_cols=227  Identities=17%  Similarity=0.158  Sum_probs=145.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..+.+=|.++++.+|..|+++|++++. ++....     .++.+..++. ++++.||+.|+.++..+...+|+.-..  
T Consensus        81 ~n~l~kdl~~~n~~~~~lAL~~l~~i~~-~~~~~~-----l~~~v~~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~--  151 (526)
T PF01602_consen   81 INSLQKDLNSPNPYIRGLALRTLSNIRT-PEMAEP-----LIPDVIKLLS-DPSPYVRKKAALALLKIYRKDPDLVED--  151 (526)
T ss_dssp             HHHHHHHHCSSSHHHHHHHHHHHHHH-S-HHHHHH-----HHHHHHHHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHG--
T ss_pred             HHHHHHhhcCCCHHHHHHHHhhhhhhcc-cchhhH-----HHHHHHHHhc-CCchHHHHHHHHHHHHHhccCHHHHHH--
Confidence            5666666789999999999999999884 333322     4788888888 578899999999999998764554322  


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-hCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                       . .++.+..++ .+.++.+...|+.++..+ +.++... .+. ...++.|.+++...+|.++..+.+.+..++..+...
T Consensus       152 -~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i~~~~~~~~-~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  152 -E-LIPKLKQLL-SDKDPSVVSAALSLLSEIKCNDDSYK-SLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             -G-HHHHHHHHT-THSSHHHHHHHHHHHHHHHCTHHHHT-THH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             -H-HHHHHhhhc-cCCcchhHHHHHHHHHHHccCcchhh-hhH-HHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence             1 378888888 667899999999999999 3222211 111 234455666667888888888888888887532222


Q ss_pred             h--hHHHh-------------------hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050          301 A--TQVRF-------------------IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA  359 (408)
Q Consensus       301 ~--~~~~~-------------------~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~  359 (408)
                      .  ..+..                   ++..+...+.     .-..+++.|+.++.+.++.++..++..|..++...   
T Consensus       227 ~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~---  298 (526)
T PF01602_consen  227 ADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN---  298 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC---
T ss_pred             hhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc---
Confidence            2  11111                   1222222222     22356777777777777778877887777777765   


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          360 REMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       360 ~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      ...+.  .....+..+...++..++..|..+|.
T Consensus       299 ~~~v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~  329 (526)
T PF01602_consen  299 PPAVF--NQSLILFFLLYDDDPSIRKKALDLLY  329 (526)
T ss_dssp             HHHHG--THHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred             chhhh--hhhhhhheecCCCChhHHHHHHHHHh
Confidence            22223  23333444444455567766665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.29  E-value=1.5e-05  Score=81.50  Aligned_cols=146  Identities=13%  Similarity=0.084  Sum_probs=116.4

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHH
Q 041050          193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRAL  271 (408)
Q Consensus       193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L  271 (408)
                      ..|.+++.+|+-.+.+++..-...+.-+-..++..+|+.++ ..++..+...+.++|+||. .-...+..++..||+..+
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll-~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l  466 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLL-MDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDIL  466 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHh-hCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHH
Confidence            45778888888777777765344444456677889999998 5567788999999999999 667788899999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCc-HHHHHHhccCCCHHHHHHHHHHHH
Q 041050          272 LGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGA-LPWIVQNANNEAAPIRRHIELALC  350 (408)
Q Consensus       272 ~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~-l~~Lv~lL~~~~~~v~~~a~~aL~  350 (408)
                      .+++.+.++.++..+.|+|.++..                 +.++.........+ ...+..+..++++.|++.+...+.
T Consensus       467 ~s~~~~~~~n~r~~~~~~Lr~l~f-----------------~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllR  529 (678)
T KOG1293|consen  467 ESMLTDPDFNSRANSLWVLRHLMF-----------------NCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLR  529 (678)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHh-----------------cchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999999999999999999999997                 33333333333333 346677889999999999999999


Q ss_pred             HHccCc
Q 041050          351 HLAQHE  356 (408)
Q Consensus       351 ~La~~~  356 (408)
                      |+.++.
T Consensus       530 Nl~c~~  535 (678)
T KOG1293|consen  530 NLTCNS  535 (678)
T ss_pred             HhhcCc
Confidence            999984

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.24  E-value=2.1e-06  Score=57.10  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=38.2

Q ss_pred             CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          255 NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       255 ~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      ++++++.+++.|+++.|+.+|++++++++++|+|+|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            5788999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=6.8e-05  Score=78.02  Aligned_cols=232  Identities=16%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ++.+..++.++++.+|..|+.++..+.. .|+.-..   . .++.+..+|. +.++.++..|+.++..+..+ +.....+
T Consensus       116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~-d~~~~V~~~a~~~l~~i~~~-~~~~~~~  189 (526)
T PF01602_consen  116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLS-DKDPSVVSAALSLLSEIKCN-DDSYKSL  189 (526)
T ss_dssp             HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTT-HSSHHHHHHHHHHHHHHHCT-HHHHTTH
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhcc-CCcchhHHHHHHHHHHHccC-cchhhhh
Confidence            6777789999999999999999999976 5543221   1 3788999997 57899999999999999222 2221111


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                      . ...++.|..++ ...+|-++..++.++..++. ++.....   ...++.+..++.+.++.|..+|+.++..+.. ...
T Consensus       190 ~-~~~~~~L~~~l-~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~-~~~  263 (526)
T PF01602_consen  190 I-PKLIRILCQLL-SDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSP-SPE  263 (526)
T ss_dssp             H-HHHHHHHHHHH-TCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SHH
T ss_pred             H-HHHHHHhhhcc-cccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhc-chH
Confidence            0 11233344443 56778888888888888873 3333311   3445566666666677777777777777653 222


Q ss_pred             hhhHHHhhhhhccCChhh--HHHHHh-------cC-----cHHHHHHhcc-CCCHHHHHHHHHHHHHHccCchhHHHHHh
Q 041050          300 AATQVRFIRCTATGVKSG--RSLLIE-------DG-----ALPWIVQNAN-NEAAPIRRHIELALCHLAQHEVNAREMIS  364 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~--~~~i~~-------~g-----~l~~Lv~lL~-~~~~~v~~~a~~aL~~La~~~~~~~~l~~  364 (408)
                      .....+..++.|..+++.  +-...+       ..     .....+..+. +++..++..+..+|.+++...+. ..   
T Consensus       264 ~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~-~~---  339 (526)
T PF01602_consen  264 LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLYKLANESNV-KE---  339 (526)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH-HH---
T ss_pred             HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHhhcccccch-hh---
Confidence            222222223332222221  111111       01     1122233444 77899999999999999875443 33   


Q ss_pred             CCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          365 GGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       365 ~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                        +++.|...+...++.+++..+.+.+
T Consensus       340 --Il~eL~~~l~~~~d~~~~~~~i~~I  364 (526)
T PF01602_consen  340 --ILDELLKYLSELSDPDFRRELIKAI  364 (526)
T ss_dssp             --HHHHHHHHHHHC--HHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhccchhhhhhHHHHH
Confidence              5788888886555555665555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF05536 Neurochondrin: Neurochondrin

Probab=98.19  E-value=0.00021  Score=74.50  Aligned_cols=200  Identities=18%  Similarity=0.180  Sum_probs=144.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cc---hhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHhc
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EE---ANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANLA  210 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~---~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nLa  210 (408)
                      .+++++.+|++.+.+-|-.++-.+.++.. ++   ..+..+.+.-|.+-|-.+|.+.      +....+..|+.+|+.+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            47889999999888888888888899987 33   2345688988988888888752      34567888999999999


Q ss_pred             cCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHH
Q 041050          211 MNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI  290 (408)
Q Consensus       211 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL  290 (408)
                      .+ |+....--=.+-||.|++.+..+++..+...+..+|..++..++.++.+++.|+++.|.+.+.+ .+.....+..++
T Consensus        86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL  163 (543)
T PF05536_consen   86 RD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLL  163 (543)
T ss_pred             CC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHH
Confidence            98 7765332223469999999977777689999999999999999999999999999999999976 566778888888


Q ss_pred             HHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       291 ~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      .+++.......            -.+....+.  .+++.+...........+-..+..|..+-...
T Consensus       164 ~~Lls~~~~~~------------~~~~~~~l~--~il~~La~~fs~~~~~~kfell~~L~~~L~~~  215 (543)
T PF05536_consen  164 LNLLSRLGQKS------------WAEDSQLLH--SILPSLARDFSSFHGEDKFELLEFLSAFLPRS  215 (543)
T ss_pred             HHHHHhcchhh------------hhhhHHHHH--HHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence            88875111000            001111111  24455555555555556666677776665543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.17  E-value=0.00011  Score=69.22  Aligned_cols=205  Identities=21%  Similarity=0.246  Sum_probs=136.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      -.++.++.+.++.+|..|+..|.++++. ..+.-... .-.++.+.+++... ++  ...|+.+|.|++.+ +..++.++
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~-~~l~~~ll   80 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQK-EELRKKLL   80 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhh-HHHHHHHH
Confidence            4577899999999999999999999886 22222211 22378888998843 33  56688999999999 99999988


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-------cccHHHHHHhhcCC-CH-HHHHHHHHHHHH
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-------EGGIRALLGMVRCG-HP-DVLSQVARGIAN  292 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-------~g~l~~L~~lL~~~-~~-~v~~~a~~aL~n  292 (408)
                      +. -+..++..+.+.. -.+-..++.+|+|++.++.....+..       .|...........+ +. .-..+.+..++|
T Consensus        81 ~~-~~k~l~~~~~~p~-~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQ-SPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HH-HHHHHHHHhcCcc-cchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            87 6667777774433 35777899999999977655544432       23333333333322 21 223456677778


Q ss_pred             hhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH--HHHHhccCCCHHHHH-HHHHHHHHHccCchhHHHHHhCCcHH
Q 041050          293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP--WIVQNANNEAAPIRR-HIELALCHLAQHEVNAREMISGGALW  369 (408)
Q Consensus       293 L~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~--~Lv~lL~~~~~~v~~-~a~~aL~~La~~~~~~~~l~~~g~i~  369 (408)
                      |+                  ....+|..+.+...+|  .+..+-. .+..+|+ ..+.+|.|+|.+..+...+.. -.+.
T Consensus       159 ls------------------~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~lL~-e~~~  218 (353)
T KOG2973|consen  159 LS------------------QFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEVLLD-ESIN  218 (353)
T ss_pred             Hh------------------hhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHHHhc-chHH
Confidence            77                  4677777777655443  3444444 5556655 488999999999888877775 3344


Q ss_pred             HHHHH
Q 041050          370 ELVRI  374 (408)
Q Consensus       370 ~L~~l  374 (408)
                      .|..+
T Consensus       219 lLp~i  223 (353)
T KOG2973|consen  219 LLPAI  223 (353)
T ss_pred             HHHHH
Confidence            44433

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.15  E-value=4.5e-06  Score=55.44  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=37.9

Q ss_pred             ChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          314 VKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       314 ~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +++.+..+++.|++|.|++++++++++++++|+|+|+||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            36778899999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PTZ00429 beta-adaptin; Provisional

Probab=98.13  E-value=0.0015  Score=70.27  Aligned_cols=179  Identities=14%  Similarity=0.078  Sum_probs=128.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..+.+=+.++++-+|..|++.|+++-.     ..+++. .++.+...+. +.++-||+.|+.++..+-..++   +.+.
T Consensus       107 INtl~KDl~d~Np~IRaLALRtLs~Ir~-----~~i~e~-l~~~lkk~L~-D~~pYVRKtAalai~Kly~~~p---elv~  176 (746)
T PTZ00429        107 VNTFLQDTTNSSPVVRALAVRTMMCIRV-----SSVLEY-TLEPLRRAVA-DPDPYVRKTAAMGLGKLFHDDM---QLFY  176 (746)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCc-----HHHHHH-HHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCc---cccc
Confidence            5666667778999999999999998755     223332 4667778887 5789999999999999976534   3445


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      +.|-++.|..+| .+.++.|..+|+.+|..++ .++..  .-...+.+..|+..+..-++..+-....+|.....     
T Consensus       177 ~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~~~--l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P-----  248 (746)
T PTZ00429        177 QQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGSEK--IESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP-----  248 (746)
T ss_pred             ccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCchh--hHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-----
Confidence            566778888987 6788999999999999998 33322  11234455667777766667777777777755431     


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                                  .+.   ...  ..++..+.+.+++.++.|...|+.++.+++..
T Consensus       249 ------------~~~---~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        249 ------------SDK---ESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASR  286 (746)
T ss_pred             ------------CCc---HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCc
Confidence                        111   111  24677888889889999999999999999865

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0006  Score=64.36  Aligned_cols=241  Identities=17%  Similarity=0.150  Sum_probs=161.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      ++.+.++++...+  -+.|+.+|.|++.++..+.++... .+..++..+.+ +.-......+.+|.||+.+ +.....+.
T Consensus        46 lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~-~~k~l~~~~~~-p~~~lad~~cmlL~NLs~~-~~~~~~ll  120 (353)
T KOG2973|consen   46 LKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD-LLKVLMDMLTD-PQSPLADLICMLLSNLSRD-DDEVAALL  120 (353)
T ss_pred             HHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHhcC-cccchHHHHHHHHHHhccC-chHHHHHH
Confidence            6778888886555  678999999999999999999888 66666777663 3235666788899999999 55554433


Q ss_pred             hc------CcHHHHHHHhhcCCCH--HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh--cCCCHHHHH-HHHHHH
Q 041050          222 AQ------GGISLLSTTAADAEDP--QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV--RCGHPDVLS-QVARGI  290 (408)
Q Consensus       222 ~~------g~i~~Lv~lL~~~~~~--~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL--~~~~~~v~~-~a~~aL  290 (408)
                      ..      .|+..++.........  .-....+.+++||+..+..|..+.+...++ .-.++  .+.+..+++ -++++|
T Consensus       121 ~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p-~~kll~ft~~~s~vRr~Gvagtl  199 (353)
T KOG2973|consen  121 TNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFP-DQKLLPFTSEDSQVRRGGVAGTL  199 (353)
T ss_pred             HhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhh-HhhhhcccccchhhhccchHHHH
Confidence            21      4555555544322211  223467889999999999999998766433 22222  345667765 477999


Q ss_pred             HHhhccchhhhhHHHhh--------hhhccCChhhHHHHHhcCcHHHHHHhccC-----CCHHHHHHHHHHHHHHccCch
Q 041050          291 ANFAKCESRAATQVRFI--------RCTATGVKSGRSLLIEDGALPWIVQNANN-----EAAPIRRHIELALCHLAQHEV  357 (408)
Q Consensus       291 ~nL~~~~~~~~~~~~~~--------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-----~~~~v~~~a~~aL~~La~~~~  357 (408)
                      .|.|. +...-.++.+.        +.=+||..+.-..=+ .+.-+.| +++..     +++.+|..-+-+|.-||....
T Consensus       200 kN~cF-d~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm-~~LP~eL-QyLp~dKeRepdpdIrk~llEai~lLcaT~~  276 (353)
T KOG2973|consen  200 KNCCF-DAKLHEVLLDESINLLPAILLPLAGPEELSEEDM-AKLPVEL-QYLPEDKEREPDPDIRKMLLEALLLLCATRA  276 (353)
T ss_pred             Hhhhc-cchhHHHHhcchHHHHHHHHhhcCCccccCHHHH-hcCCHhh-hcCCccccCCCChHHHHHHHHHHHHHHhhhH
Confidence            99884 33332222221        111233332211111 1333344 66642     489999999999999999999


Q ss_pred             hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          358 NAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      .+..+-+-|+.+.|..+=....+++++.++.+..
T Consensus       277 GRe~lR~kgvYpilRElhk~e~ded~~~ace~vv  310 (353)
T KOG2973|consen  277 GREVLRSKGVYPILRELHKWEEDEDIREACEQVV  310 (353)
T ss_pred             hHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHH
Confidence            9888989999888888888778888888877543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.11  E-value=4.5e-05  Score=74.58  Aligned_cols=167  Identities=11%  Similarity=0.141  Sum_probs=134.3

Q ss_pred             CCCchHHHHHHhcCHHHHHHhh-c-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050          128 GQKAPITKLFEQVGLHKILSLL-E-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA  205 (408)
Q Consensus       128 ~~~~~~~~l~~~~~v~~Ll~lL-~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a  205 (408)
                      -..+-.-.++...|+..++..+ + ..+-.+|.+.+.+++-|++++...+.+...+-|+.|..+++.+..+.|.+.++.+
T Consensus       186 ~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai  265 (442)
T KOG2759|consen  186 RVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAI  265 (442)
T ss_pred             cCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445566788899999888 4 5678999999999999999999998886677799999999976678899999999


Q ss_pred             HHHhccCCh------hhHHHHHhcC-------------------------------------------------------
Q 041050          206 IANLAMNAE------ANQELIMAQG-------------------------------------------------------  224 (408)
Q Consensus       206 L~nLa~~~~------~~~~~i~~~g-------------------------------------------------------  224 (408)
                      +.|+....+      .....++..+                                                       
T Consensus       266 ~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP  345 (442)
T KOG2759|consen  266 FRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSP  345 (442)
T ss_pred             HHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCc
Confidence            999987742      2222333333                                                       


Q ss_pred             ---------------------cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHH
Q 041050          225 ---------------------GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDV  282 (408)
Q Consensus       225 ---------------------~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v  282 (408)
                                           .+..|+.+|..+.||.+...||.=|+... ..|+.+..+.+.||=..+++++.++||+|
T Consensus       346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V  425 (442)
T KOG2759|consen  346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV  425 (442)
T ss_pred             cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence                                 33455666666678888888888888888 88999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 041050          283 LSQVARGIANFA  294 (408)
Q Consensus       283 ~~~a~~aL~nL~  294 (408)
                      +.+|..|+.-|.
T Consensus       426 ry~ALlavQ~lm  437 (442)
T KOG2759|consen  426 RYHALLAVQKLM  437 (442)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988775

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00026  Score=76.87  Aligned_cols=191  Identities=15%  Similarity=0.163  Sum_probs=130.9

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHH
Q 041050          185 SLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKL  262 (408)
Q Consensus       185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i  262 (408)
                      .+-.+|. +.+...|.+|+.+|+.++..+++.-..... ..++..+..| .+++|.|+-.|+-+++-++.|  +..+...
T Consensus       352 ~l~~~l~-S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l-~DphprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  352 ALEAMLQ-STEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGL-NDPHPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhc-CCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            3444555 468889999999999998775544333322 2455566666 679999999999999999843  4444444


Q ss_pred             HhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhc-cchhhhhHHHhhhhhccCChhhHHHHHhcCcHH-HHHHhccCCCH
Q 041050          263 RSEGGIRALLGMVR-CGHPDVLSQVARGIANFAK-CESRAATQVRFIRCTATGVKSGRSLLIEDGALP-WIVQNANNEAA  339 (408)
Q Consensus       263 ~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~-~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~-~Lv~lL~~~~~  339 (408)
                      . ...++.|+..+. ..++.|+.+|+.++-|++. |..+....                 .. ++++. .+..++.++.+
T Consensus       429 ~-e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p-----------------YL-d~lm~~~l~~L~~~~~~  489 (1075)
T KOG2171|consen  429 H-ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP-----------------YL-DGLMEKKLLLLLQSSKP  489 (1075)
T ss_pred             H-HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH-----------------HH-HHHHHHHHHHHhcCCch
Confidence            3 457778888885 6788999999999999985 22221111                 11 24455 44446678899


Q ss_pred             HHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHhh
Q 041050          340 PIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTF  397 (408)
Q Consensus       340 ~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~~  397 (408)
                      .++..++.+|+..|......-.=.-...++.|..++.....++.+.+..+++.|-.-.
T Consensus       490 ~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli  547 (1075)
T KOG2171|consen  490 YVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI  547 (1075)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence            9999999999999876332211113346889999999888788887777766655444

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=0.00057  Score=73.32  Aligned_cols=246  Identities=15%  Similarity=0.155  Sum_probs=176.5

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ++.++.++. ..++.++..|+.++.-++.+.+.-..+++.|.+..|+.+|-+  -|..|..++.+|+.|+.+ +.....-
T Consensus      1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS--~PS~R~~vL~vLYAL~S~-~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS--QPSMRARVLDVLYALSSN-GQIGKEA 1849 (2235)
T ss_pred             cHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc--ChHHHHHHHHHHHHHhcC-cHHHHHH
Confidence            455556665 577889999999999999999999999999999999999974  678899999999999999 9999999


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch---------------hHHHHHhcccHHHHHHhhc--CCCHHH-
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK---------------LQMKLRSEGGIRALLGMVR--CGHPDV-  282 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~---------------~~~~i~~~g~l~~L~~lL~--~~~~~v-  282 (408)
                      ++.||+..+..++..+.++..+..++..++.|..++-               .-..++. ++..+.+.++.  +.+|++ 
T Consensus      1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~R-D~PEAaVH~fE~T~EnPELi 1928 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLR-DSPEAAVHMFESTSENPELI 1928 (2235)
T ss_pred             HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHh-cCHHHHHHHHhccCCCcccc
Confidence            9999999999888888999999999999999975431               1111222 23355666663  233332 


Q ss_pred             -----HHHHHHHHHHhhcc-----------------------------------------c-------hhh-hh----H-
Q 041050          283 -----LSQVARGIANFAKC-----------------------------------------E-------SRA-AT----Q-  303 (408)
Q Consensus       283 -----~~~a~~aL~nL~~~-----------------------------------------~-------~~~-~~----~-  303 (408)
                           +..+...+..++..                                         +       ++. .+    + 
T Consensus      1929 Wn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~ 2008 (2235)
T KOG1789|consen 1929 WNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKV 2008 (2235)
T ss_pred             cCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHH
Confidence                 22222333332220                                         0       000 00    0 


Q ss_pred             ----------------HHh-hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC
Q 041050          304 ----------------VRF-IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG  366 (408)
Q Consensus       304 ----------------~~~-~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g  366 (408)
                                      +.- .+|-+-.++..-+.+-.-|-+|.++..+...+..+-+.|..+|..|+.+.-+...|....
T Consensus      2009 lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~ 2088 (2235)
T KOG1789|consen 2009 LELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLP 2088 (2235)
T ss_pred             HHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhccc
Confidence                            001 156666778877788888999999998877777777899999999999999999999877


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          367 ALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       367 ~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      .+..++..+...  .+.-.+|..+|+.
T Consensus      2089 ~i~~~m~~mkK~--~~~~GLA~EalkR 2113 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQ--PSLMGLAAEALKR 2113 (2235)
T ss_pred             cchhhHHHHHhc--chHHHHHHHHHHH
Confidence            777788776632  2233355555543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00037  Score=75.68  Aligned_cols=169  Identities=18%  Similarity=0.155  Sum_probs=119.9

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050          147 SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG  225 (408)
Q Consensus       147 ~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~  225 (408)
                      .++.|++..-|..|+.+|..++. ..+.-...... .++..+..|+ ++.|.||.+|+.+++.++.+....-++-...-.
T Consensus       355 ~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~-Il~~Vl~~l~-DphprVr~AA~naigQ~stdl~p~iqk~~~e~l  432 (1075)
T KOG2171|consen  355 AMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPK-ILPIVLNGLN-DPHPRVRYAALNAIGQMSTDLQPEIQKKHHERL  432 (1075)
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHH-HHHHHHhhcC-CCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhc
Confidence            56678999999999999999987 33333222222 4666677777 578999999999999999986655566666667


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhH-HHHHhcccHHHHHH-hhcCCCHHHHHHHHHHHHHhhccchhhhh
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQ-MKLRSEGGIRALLG-MVRCGHPDVLSQVARGIANFAKCESRAAT  302 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~-~~i~~~g~l~~L~~-lL~~~~~~v~~~a~~aL~nL~~~~~~~~~  302 (408)
                      +|.|+..+.+...+.+..+|+.++-|++ .++... .-.. .+.+..++. ++.++.+.++..|..+|+..+.       
T Consensus       433 ~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~-------  504 (1075)
T KOG2171|consen  433 PPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD-------  504 (1075)
T ss_pred             cHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH-------
Confidence            8899999988888999999999999998 443221 1111 133342333 4468889999999999999984       


Q ss_pred             HHHhhhhhccCChhhHHHHHh--cCcHHHHHHhccCCC
Q 041050          303 QVRFIRCTATGVKSGRSLLIE--DGALPWIVQNANNEA  338 (408)
Q Consensus       303 ~~~~~i~~~~~~~~~~~~i~~--~g~l~~Lv~lL~~~~  338 (408)
                                   .....|+.  +..+|.|...+.+.+
T Consensus       505 -------------AA~~~F~pY~d~~Mp~L~~~L~n~~  529 (1075)
T KOG2171|consen  505 -------------AAQEKFIPYFDRLMPLLKNFLQNAD  529 (1075)
T ss_pred             -------------HHhhhhHhHHHHHHHHHHHHHhCCC
Confidence                         12223332  257788888887654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.97  E-value=2.2e-05  Score=60.97  Aligned_cols=87  Identities=28%  Similarity=0.403  Sum_probs=70.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLL-ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL-~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ||.|++.| +++++.+|..++++|+.+..          ...++.|+.++. ++++.+|..|+++|+.+...        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~i~~~--------   61 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD----------PEAIPALIELLK-DEDPMVRRAAARALGRIGDP--------   61 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH----------HHHHHHHHHHHT-SSSHHHHHHHHHHHHCCHHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCH--------
Confidence            58899988 79999999999999995421          235999999997 58999999999999988432        


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIA  250 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~  250 (408)
                         .+++.|..++.++++..++..++.+|+
T Consensus        62 ---~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   62 ---EAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               378999999877777788888888874

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.95  E-value=0.00023  Score=76.24  Aligned_cols=218  Identities=18%  Similarity=0.172  Sum_probs=162.5

Q ss_pred             HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHc-CCchhHHHHHHhCCHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCCh
Q 041050          138 EQVGLHKILSLLESEDANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLRSF--EDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa-~~~~~~~~i~~~g~i~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      .-|.+|-.++||.++-.++|-.-+-+=+.|- .++..+..+++.+|-.-.++.|.++  -+++.|..|+.+|+.+..+.+
T Consensus       510 sVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~  589 (1387)
T KOG1517|consen  510 SVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFK  589 (1387)
T ss_pred             ccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccc
Confidence            4466899999999999999888777777664 4999999999999998888888752  356899999999999999989


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      ..|+...+.+.+..-+..|.++++|-++.-++-+|+.|= ..++.|=.=++.++...|..+|..+-|+|+..|..||..|
T Consensus       590 lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtf  669 (1387)
T KOG1517|consen  590 LGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTF  669 (1387)
T ss_pred             hhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            999999999988887888855446667777777888875 6667766667788999999999999999999999999999


Q ss_pred             hccchh---hhhHHHhhhhhccCChhhHHHHHhcCcH---HHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050          294 AKCESR---AATQVRFIRCTATGVKSGRSLLIEDGAL---PWIVQNANNEAAPIRRHIELALCHLAQHEVNA  359 (408)
Q Consensus       294 ~~~~~~---~~~~~~~~i~~~~~~~~~~~~i~~~g~l---~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~  359 (408)
                      ....++   ...+.+...-   .-++ .+.-+++-..   -.++.+++.+.+-++.+.+.+|.+++.+..+.
T Consensus       670 l~~~~d~fde~~~~~~~~~---~l~~-~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~  737 (1387)
T KOG1517|consen  670 LSNGSDNFDEQTLVVEEEI---DLDD-ERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH  737 (1387)
T ss_pred             hcccccccchhhhhhhhhh---cchh-hhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence            863211   1111100000   0000 0011222222   36777888889999999999999988774443

>TIGR02270 conserved hypothetical protein

Probab=97.95  E-value=0.0012  Score=66.48  Aligned_cols=197  Identities=16%  Similarity=0.070  Sum_probs=132.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      ++.++..|.+.++.++..++.+|+.+-.          ....+.|+.+|. +.++.++..++.++.....+         
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~-~~~p~vR~aal~al~~r~~~---------  147 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLGG----------RQAEPWLEPLLA-ASEPPGRAIGLAALGAHRHD---------  147 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhc-CCChHHHHHHHHHHHhhccC---------
Confidence            7888899998999999999999875432          445788888897 46788888888777663333         


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA  301 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~  301 (408)
                         ..+.|..+| +++++.++..++++|+.+..          ...++.|...+.+.++.|+..|++++..+..  ..+.
T Consensus       148 ---~~~~L~~~L-~d~d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~A~  211 (410)
T TIGR02270       148 ---PGPALEAAL-THEDALVRAAALRALGELPR----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--RLAW  211 (410)
T ss_pred             ---hHHHHHHHh-cCCCHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--HhHH
Confidence               456788888 57889999999999988752          3455667777899999999999999988752  2222


Q ss_pred             hHHHhhhhhccCChhhHH--HHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHH
Q 041050          302 TQVRFIRCTATGVKSGRS--LLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRIS  375 (408)
Q Consensus       302 ~~~~~~i~~~~~~~~~~~--~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll  375 (408)
                      ..+.. .....|.+..+.  .+.    ....+++|..+++.+.  ++..++++++.+...          ..++.|+..+
T Consensus       212 ~~l~~-~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~p----------~av~~L~~~l  278 (410)
T TIGR02270       212 GVCRR-FQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAAA--TRREALRAVGLVGDV----------EAAPWCLEAM  278 (410)
T ss_pred             HHHHH-HHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcChh--hHHHHHHHHHHcCCc----------chHHHHHHHh
Confidence            22111 001112211111  111    2256778888887654  888898888866543          2577777777


Q ss_pred             hcCCHHHHHHHHHHH
Q 041050          376 RDCSREDIRSLAHRT  390 (408)
Q Consensus       376 ~~~~~~~~~~~A~~~  390 (408)
                      ....   ++..|...
T Consensus       279 ~d~~---~aR~A~eA  290 (410)
T TIGR02270       279 REPP---WARLAGEA  290 (410)
T ss_pred             cCcH---HHHHHHHH
Confidence            6332   44444433

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.94  E-value=4.6e-05  Score=60.92  Aligned_cols=68  Identities=31%  Similarity=0.401  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050          198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE  265 (408)
Q Consensus       198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~  265 (408)
                      ++...+.+|+||+..++.+|+.+.+.||+|.++..-. +..+|-+++.|..+|.||| +|++||+.|.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3556788999999999999999999999999887642 5567999999999999999 999999988763

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0038  Score=61.63  Aligned_cols=238  Identities=17%  Similarity=0.152  Sum_probs=169.5

Q ss_pred             cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc----------hhHHHHHHhCCHHHHH
Q 041050          118 KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEE----------ANQEKIVEAGGLSSLL  187 (408)
Q Consensus       118 ~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~----------~~~~~i~~~g~i~~L~  187 (408)
                      ..+|-...++..-+=...+++-++|+.|+.+|.++|.++-...+..|.-|+..+          .....+++.+.++.|+
T Consensus       103 d~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  103 DIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            456666666666666678999999999999999999999999999999998522          2346677777889998


Q ss_pred             HHHcCC-----CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHH
Q 041050          188 MLLRSF-----EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQM  260 (408)
Q Consensus       188 ~lL~~~-----~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~  260 (408)
                      +-+..-     +...-...+...+-|+..-.+.....+++.|-+..|+.-+. ..+-..-...+..+++=+- .+++++.
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            877421     12334555777888888877999999999988888776443 3233345567777777666 5556888


Q ss_pred             HHHhcccHHHHHHhh---cCCCH------HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050          261 KLRSEGGIRALLGMV---RCGHP------DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV  331 (408)
Q Consensus       261 ~i~~~g~l~~L~~lL---~~~~~------~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv  331 (408)
                      .+...+|+..+++-+   +..||      +...+.--+|+.+.                  -.+.++..+....++....
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~l------------------m~~~nr~~Fl~~EGlqLm~  324 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLL------------------MAPANRERFLKGEGLQLMN  324 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHh------------------cChhhhhhhhccccHHHHH
Confidence            888899999988866   33332      22333334444433                  5788888898877776554


Q ss_pred             HhccCCCHHHHHHHHHHHHHHccCc---hhHHHHHhCCcHHHHHHH
Q 041050          332 QNANNEAAPIRRHIELALCHLAQHE---VNAREMISGGALWELVRI  374 (408)
Q Consensus       332 ~lL~~~~~~v~~~a~~aL~~La~~~---~~~~~l~~~g~i~~L~~l  374 (408)
                      -+++. ....+..+..+|-+...++   ++...+++.+|...+..+
T Consensus       325 Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~  369 (536)
T KOG2734|consen  325 LMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL  369 (536)
T ss_pred             HHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence            45553 5556777889998888764   567778888888766553

>TIGR02270 conserved hypothetical protein

Probab=97.89  E-value=0.00046  Score=69.36  Aligned_cols=154  Identities=14%  Similarity=0.073  Sum_probs=118.8

Q ss_pred             hcCHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          139 QVGLHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       139 ~~~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ..+++.++..|. .++.+++..++.++..  .++        ..++..|+..|.+ .++.++..++.+|..+-..     
T Consensus        53 ~~a~~~L~~aL~~d~~~ev~~~aa~al~~--~~~--------~~~~~~L~~~L~d-~~~~vr~aaa~ALg~i~~~-----  116 (410)
T TIGR02270        53 KAATELLVSALAEADEPGRVACAALALLA--QED--------ALDLRSVLAVLQA-GPEGLCAGIQAALGWLGGR-----  116 (410)
T ss_pred             HhHHHHHHHHHhhCCChhHHHHHHHHHhc--cCC--------hHHHHHHHHHhcC-CCHHHHHHHHHHHhcCCch-----
Confidence            346888999995 6778887766666542  211        1138899999984 6778999999999876554     


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                            +..+.|+.+| .+.+|.++..++.++...           .....+.+..+|+++++.|+..|+++|+.+..  
T Consensus       117 ------~a~~~L~~~L-~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--  176 (410)
T TIGR02270       117 ------QAEPWLEPLL-AASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELPR--  176 (410)
T ss_pred             ------HHHHHHHHHh-cCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--
Confidence                  4677888898 678899998888777662           22345678888999999999999999999863  


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                                                ...++.|...+.+.++.||..|..++..+..
T Consensus       177 --------------------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~  207 (410)
T TIGR02270       177 --------------------------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS  207 (410)
T ss_pred             --------------------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence                                      3577788888999999999999999877754

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.87  E-value=7.4e-05  Score=59.75  Aligned_cols=68  Identities=29%  Similarity=0.314  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050          157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELIMAQG  224 (408)
Q Consensus       157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g  224 (408)
                      +...+++|+||++ ++.+++.+.+.||||.+++...-+ .+|-+++.|.++|.||+.++++||+.|.+..
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~   72 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE   72 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence            5567889999999 899999999999999999987533 5799999999999999999999999987643

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.86  E-value=4.8e-05  Score=59.02  Aligned_cols=87  Identities=23%  Similarity=0.318  Sum_probs=70.4

Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR  305 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~  305 (408)
                      ||.|+..|.+++++.++..++.+|+++.          +...++.|..++.++++.++..|+++|+.+.           
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRIG-----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------
Confidence            5788998877899999999999998542          2245888999999999999999999999885           


Q ss_pred             hhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHH
Q 041050          306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALC  350 (408)
Q Consensus       306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~  350 (408)
                                       +..+++.|.+++.++ +..+|..|..+|+
T Consensus        60 -----------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -----------------DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -----------------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -----------------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                             234889999988775 5556888888874

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.83  E-value=0.0014  Score=64.33  Aligned_cols=157  Identities=25%  Similarity=0.345  Sum_probs=117.6

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      ..++.++.++.+++..+|..|+.+++.+..          ...++.|..++. +.++.+|..|+.+|+++-..       
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~----------~~av~~l~~~l~-d~~~~vr~~a~~aLg~~~~~-------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS----------EEAVPLLRELLS-DEDPRVRDAAADALGELGDP-------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch----------HHHHHHHHHHhc-CCCHHHHHHHHHHHHccCCh-------
Confidence            357888999999999999999999776544          346899999998 46889999999988888765       


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCH------------HHHHHHH
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHP------------DVLSQVA  287 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~------------~v~~~a~  287 (408)
                          ..++.|+.++..+++..++..++++|..+-          +..++..++..+..+..            .++..+.
T Consensus       105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~----------~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~  170 (335)
T COG1413         105 ----EAVPPLVELLENDENEGVRAAAARALGKLG----------DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAA  170 (335)
T ss_pred             ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC----------chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHH
Confidence                268899999865688899999999998764          23346667777765542            3455555


Q ss_pred             HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      .++..+.                            +...++.+...+......+|..|..+|+.+..+.
T Consensus       171 ~~l~~~~----------------------------~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         171 EALGELG----------------------------DPEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             HHHHHcC----------------------------ChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence            5555553                            2346677777777777788888888887777664

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.81  E-value=0.00015  Score=72.75  Aligned_cols=202  Identities=12%  Similarity=0.086  Sum_probs=144.0

Q ss_pred             HHHHHHHH--HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050          158 IHAVKVVA--NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA  234 (408)
Q Consensus       158 ~~A~~aL~--nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~  234 (408)
                      ..+++++.  .++. -...|.-+.+....++|+.+|+. ++.-+.--+..+++|........+..+.+.|.+..|+.++.
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~-Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN-PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC-ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence            34455554  4443 24456666677778999999984 44445555889999998887888999999999999999985


Q ss_pred             cCCCHHHHHHHHHHHHHHh-CCch-hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhcc
Q 041050          235 DAEDPQTLRMVAGAIANLC-GNDK-LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT  312 (408)
Q Consensus       235 ~~~~~~v~~~a~~aL~nL~-~~~~-~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~  312 (408)
                       +.|..++....|++.++. ++.+ .+-.....-|...++.....++-.++.++...+.|++ |+++-            
T Consensus       484 -sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNft-c~~~k------------  549 (743)
T COG5369         484 -SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFT-CDTSK------------  549 (743)
T ss_pred             -cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcc-ccccc------------
Confidence             567789999999999998 4433 3556677788898999999999999999999999999 63331            


Q ss_pred             CChhhHHHHHhc---C-cHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH--hCCcHHHHHHHH
Q 041050          313 GVKSGRSLLIED---G-ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI--SGGALWELVRIS  375 (408)
Q Consensus       313 ~~~~~~~~i~~~---g-~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i~~L~~ll  375 (408)
                       +.+.+..++..   . ....|+..+...+|-.....++.|.+++..+++.++++  +...+..+..++
T Consensus       550 -nEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         550 -NEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             -ccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence             11222222221   1 34466777777777777778889988887777766766  344444444433

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.54  E-value=0.00021  Score=46.87  Aligned_cols=39  Identities=21%  Similarity=0.476  Sum_probs=36.1

Q ss_pred             chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          256 DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       256 ~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      ++++..+++.|+++.|+.++.++++++++.++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            457888999999999999999999999999999999997

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.0058  Score=65.98  Aligned_cols=147  Identities=16%  Similarity=0.177  Sum_probs=121.9

Q ss_pred             HHHHHHHHHHHHHHcC-CchhHHHH----HHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050          154 ANVRIHAVKVVANLAA-EEANQEKI----VEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL  228 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~-~~~~~~~i----~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~  228 (408)
                      .+-..-++.+|.|+.. +|+....+    .--|-.+.+...+....++.++..|+.++..+..+ .+.-..++..|.+..
T Consensus      1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTT 1817 (2235)
T ss_pred             HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHH
Confidence            3455678899999977 77655433    22355788888888777889999999999999999 889999999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhc---cchhhhhH
Q 041050          229 LSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAK---CESRAATQ  303 (408)
Q Consensus       229 Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~---~~~~~~~~  303 (408)
                      |+.+|.  +-|..+..++.+|..|+.+++.-....++|++..++.++ .+.++..+.+++..++.|..   .+++.++-
T Consensus      1818 LL~lLH--S~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~IT 1894 (2235)
T KOG1789|consen 1818 LLTLLH--SQPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTIT 1894 (2235)
T ss_pred             HHHHHh--cChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeee
Confidence            999983  467899999999999999999999999999999999988 57788999999999999986   34554433

>PTZ00429 beta-adaptin; Provisional

Probab=97.52  E-value=0.018  Score=62.15  Aligned_cols=175  Identities=13%  Similarity=0.120  Sum_probs=96.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHH-HHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVK-VVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      +..|-..|++.+..-+..+++ ++.+++.+.+...      +.+.++.++. +++..+++.+--.+.+++...++..-. 
T Consensus        34 ~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~-S~d~elKKLvYLYL~~ya~~~pelalL-  105 (746)
T PTZ00429         34 GAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAP-STDLELKKLVYLYVLSTARLQPEKALL-  105 (746)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhC-CCCHHHHHHHHHHHHHHcccChHHHHH-
Confidence            344445555555444444443 4455554432221      3455556665 356777777666666666642322111 


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                          .+..+.+=+ .+++|-++..|+++++++.. ++.-..     .+..+.+.+.+++|-|++.|+.|+..+-.     
T Consensus       106 ----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~-~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~-----  169 (746)
T PTZ00429        106 ----AVNTFLQDT-TNSSPVVRALAVRTMMCIRV-SSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFH-----  169 (746)
T ss_pred             ----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCc-HHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHh-----
Confidence                133333333 34667777777777766643 122122     23345566667777777777777777653     


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                                  .+++   .+.+.|+++.|..++...++.|..+|+.+|..+...
T Consensus       170 ------------~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~  209 (746)
T PTZ00429        170 ------------DDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDY  209 (746)
T ss_pred             ------------hCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHh
Confidence                        2221   223456677777777777777777777777777644

>PF05536 Neurochondrin: Neurochondrin

Probab=97.50  E-value=0.0059  Score=63.82  Aligned_cols=154  Identities=18%  Similarity=0.237  Sum_probs=118.3

Q ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh---hHHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 041050          182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA---NQELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIANL  252 (408)
Q Consensus       182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~---~~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL  252 (408)
                      .+..-+.+|++ .+.+-+-.++-.+..+..+.+.   .++.|.+.=|.+-|-++|+..      +....+..++.+|+.+
T Consensus         6 ~l~~c~~lL~~-~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKS-ADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhcc-CCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            36777889985 4456666677777888887553   244688888888888888542      3345788899999999


Q ss_pred             hCCchhHHHHHhcccHHHHHHhhcCCCH-HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHH
Q 041050          253 CGNDKLQMKLRSEGGIRALLGMVRCGHP-DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV  331 (408)
Q Consensus       253 ~~~~~~~~~i~~~g~l~~L~~lL~~~~~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv  331 (408)
                      |.+|+....=--.+-+|.|++.+...+. .+...|..+|..++                  .+++++..+++.|+++.|+
T Consensus        85 ~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia------------------s~~~G~~aLl~~g~v~~L~  146 (543)
T PF05536_consen   85 CRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA------------------SSPEGAKALLESGAVPALC  146 (543)
T ss_pred             cCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH------------------cCcHhHHHHHhcCCHHHHH
Confidence            9887764322223569999999965555 89999999999998                  6899999999999999999


Q ss_pred             HhccCCCHHHHHHHHHHHHHHccC
Q 041050          332 QNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       332 ~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      +.+.+ .+.....|..++.+++..
T Consensus       147 ei~~~-~~~~~E~Al~lL~~Lls~  169 (543)
T PF05536_consen  147 EIIPN-QSFQMEIALNLLLNLLSR  169 (543)
T ss_pred             HHHHh-CcchHHHHHHHHHHHHHh
Confidence            99987 555677888888887765

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.48  E-value=0.0016  Score=67.12  Aligned_cols=208  Identities=14%  Similarity=0.108  Sum_probs=137.9

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc
Q 041050          144 KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ  223 (408)
Q Consensus       144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~  223 (408)
                      .+++-+...++-+|...--++..++.....+..   ..++|.|..+|.+ ++....+-|.+||..++.++...-+.=+-+
T Consensus        94 ~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w---pelLp~L~~~L~s-~d~n~~EgA~~AL~KIcEDsa~~lds~~~~  169 (885)
T KOG2023|consen   94 ECLHGLGDASPLIRATVGIVITTIASTGGLQHW---PELLPQLCELLDS-PDYNTCEGAFGALQKICEDSAQFLDSDVLT  169 (885)
T ss_pred             HHHhhccCchHHHHhhhhheeeeeecccccccc---hhHHHHHHHHhcC-CcccccchhHHHHHHHHhhhHHHHhhhccc
Confidence            344555556666665555555555552222211   4579999999985 667889999999999999865433331112


Q ss_pred             C----cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          224 G----GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       224 g----~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                      .    -+|.++.+. ++++|.++..|.+++-.+.......-...=...+..+..+...++|+|++++|+++..|....++
T Consensus       170 rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d  248 (885)
T KOG2023|consen  170 RPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD  248 (885)
T ss_pred             CchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH
Confidence            2    356777776 66799999999998876653222111111134566777788889999999999999999851111


Q ss_pred             hhhHHHhhhhhccCChhhHHHHH--hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH--hCCcHHHHHHHH
Q 041050          300 AATQVRFIRCTATGVKSGRSLLI--EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI--SGGALWELVRIS  375 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~~i~--~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i~~L~~ll  375 (408)
                                          .+.  =.++++.+++..+..+.+|..+||.....+|..+.+...+.  -...+|.|++=.
T Consensus       249 --------------------kl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  249 --------------------KLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             --------------------hcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence                                111  12577777888888888999999999999999886655544  244566665533


Q ss_pred             h
Q 041050          376 R  376 (408)
Q Consensus       376 ~  376 (408)
                      .
T Consensus       309 ~  309 (885)
T KOG2023|consen  309 V  309 (885)
T ss_pred             c
Confidence            3

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.46  E-value=0.002  Score=65.85  Aligned_cols=175  Identities=16%  Similarity=0.087  Sum_probs=127.6

Q ss_pred             HHHHHHhccCChhhHHHHHhcCcHHHHHHHh---------hcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHH
Q 041050          203 AGAIANLAMNAEANQELIMAQGGISLLSTTA---------ADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       203 ~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL---------~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~  272 (408)
                      +.+|.-++.+ +.+.+.+....++..|+.+-         ....++.+...|+.+|+|+. .++..|+.+.+.|+...++
T Consensus         2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            5677888888 88888888888899888876         56678899999999999998 8889999999999999999


Q ss_pred             HhhcCC-----CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc-CcHHHHHHhccC----------
Q 041050          273 GMVRCG-----HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED-GALPWIVQNANN----------  336 (408)
Q Consensus       273 ~lL~~~-----~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~-g~l~~Lv~lL~~----------  336 (408)
                      ..++..     ++++.....+.|.-++.                 ...+.+..+++. +++..++..+..          
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa-----------------~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~  143 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTA-----------------LRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQ  143 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhc-----------------CChhHHHHHHHHhhhHHHHHHHHHHHHhccccccc
Confidence            999755     78888889999988886                 566666666644 666666554321          


Q ss_pred             -------CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC--------CHHHHHHHHHHHHhccH
Q 041050          337 -------EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC--------SREDIRSLAHRTLSSSL  395 (408)
Q Consensus       337 -------~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~--------~~~~~~~~A~~~L~~~~  395 (408)
                             .+.....++...+.|+..+......-...+.++.|+.++...        .-+.....+..+|.+.|
T Consensus       144 ~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlp  217 (446)
T PF10165_consen  144 EPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLP  217 (446)
T ss_pred             ccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCC
Confidence                   144557788999999987743322222444555565554422        12236666777776654

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.46  E-value=0.0033  Score=61.59  Aligned_cols=158  Identities=22%  Similarity=0.297  Sum_probs=113.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.+..++.+.++.+|..|+.+|+.+-.          ...++.|+.++..+.+..+|..+.++|+.+... .      
T Consensus        75 av~~l~~~l~d~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-~------  137 (335)
T COG1413          75 AVPLLRELLSDEDPRVRDAAADALGELGD----------PEAVPPLVELLENDENEGVRAAAARALGKLGDE-R------  137 (335)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-h------
Confidence            48999999999999999999998887644          446899999998667889999999999998776 2      


Q ss_pred             HhcCcHHHHHHHhhcCCC---------H--HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050          221 MAQGGISLLSTTAADAED---------P--QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG  289 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~---------~--~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a  289 (408)
                          ++..|+..+.+...         +  .++..++.++..+          .+...++.+..++...+..++..++.+
T Consensus       138 ----a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~a  203 (335)
T COG1413         138 ----ALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAAASA  203 (335)
T ss_pred             ----hhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHH
Confidence                47778888743221         1  2344444444433          233467778888988888999999999


Q ss_pred             HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      |..+..                 ++         ....+.+...+.+++..+|..++.++..+-..
T Consensus       204 L~~~~~-----------------~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~  243 (335)
T COG1413         204 LGQLGS-----------------EN---------VEAADLLVKALSDESLEVRKAALLALGEIGDE  243 (335)
T ss_pred             HHHhhc-----------------ch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc
Confidence            999874                 11         23445666666666666666666666555443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.41  E-value=0.00039  Score=45.53  Aligned_cols=39  Identities=21%  Similarity=0.405  Sum_probs=35.4

Q ss_pred             hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          316 SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       316 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +.+..+.+.|+++.|++++.+++++++..++++|.|++.
T Consensus         3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            366778899999999999999999999999999999974

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.069  Score=53.05  Aligned_cols=194  Identities=16%  Similarity=0.188  Sum_probs=138.4

Q ss_pred             HHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC---------hhhHHHHHhcCcHHHHHHHhhc
Q 041050          165 ANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA---------EANQELIMAQGGISLLSTTAAD  235 (408)
Q Consensus       165 ~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~---------~~~~~~i~~~g~i~~Lv~lL~~  235 (408)
                      .-+|..|+.-..+++.++++.|+.+|. +++.++....+..+-.|+-.+         ....+.+++.+.++.|+..+.+
T Consensus       109 hvlAt~PdLYp~lveln~V~slL~LLg-HeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveR  187 (536)
T KOG2734|consen  109 HVLATMPDLYPILVELNAVQSLLELLG-HENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVER  187 (536)
T ss_pred             HhhhcChHHHHHHHHhccHHHHHHHhc-CCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHH
Confidence            456677888889999999999999999 678899999999998887652         1345678888899999877642


Q ss_pred             ---C--CCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050          236 ---A--EDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARGIANFAKCESRAATQVRFI  307 (408)
Q Consensus       236 ---~--~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~  307 (408)
                         +  ++..-...+...+-|+. -.+.....+++.|.+..|+..+..  +-......|...++-+..            
T Consensus       188 LdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq------------  255 (536)
T KOG2734|consen  188 LDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQ------------  255 (536)
T ss_pred             hhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc------------
Confidence               1  12234557788888998 778888889999999999886643  333455567778877775            


Q ss_pred             hhhccCChhhHHHHHhcCcHHHHHHhc----cCC-----CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050          308 RCTATGVKSGRSLLIEDGALPWIVQNA----NNE-----AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISR  376 (408)
Q Consensus       308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL----~~~-----~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~  376 (408)
                           .....+.....-.++..+++-+    ..+     +.+.-.+-.-+||.+-..+.++..+....++....-+++
T Consensus       256 -----~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr  328 (536)
T KOG2734|consen  256 -----NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLR  328 (536)
T ss_pred             -----cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHH
Confidence                 2233344444445555554433    222     456677788888988899999999987777765555554

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.27  E-value=0.064  Score=58.19  Aligned_cols=253  Identities=19%  Similarity=0.189  Sum_probs=155.0

Q ss_pred             HHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc---CCCC----HHHHHHH
Q 041050          135 KLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR---SFED----ETIRRVA  202 (408)
Q Consensus       135 ~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~---~~~~----~~v~~~A  202 (408)
                      .+-+-||+..++.++.+     ....+....+..|...+.-+.||.++++.|+++.|+..|.   ..+.    +.+....
T Consensus       112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            34456899999988874     3345666677777777778999999999999999999884   1222    4555655


Q ss_pred             HHHHHHhccCChhhHHH-----HHhcC-----c---HHHHHHHhhc---CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050          203 AGAIANLAMNAEANQEL-----IMAQG-----G---ISLLSTTAAD---AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE  265 (408)
Q Consensus       203 ~~aL~nLa~~~~~~~~~-----i~~~g-----~---i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~  265 (408)
                      +.++-.|..+ ......     .....     .   +..|++.+..   ..++.+....+++|-+|+ ++++.-+.+++.
T Consensus       192 L~IiE~ll~e-a~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~  270 (802)
T PF13764_consen  192 LEIIESLLSE-ANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH  270 (802)
T ss_pred             HHHHHHHHHH-HhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH
Confidence            5565555443 111111     11222     2   4455555532   246889999999999999 777777777653


Q ss_pred             ccHHHHHHhhcC---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC----
Q 041050          266 GGIRALLGMVRC---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA----  338 (408)
Q Consensus       266 g~l~~L~~lL~~---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~----  338 (408)
                        ++..+++=.-   ..++- ..-+.+++.++..-++..           .-...++.+++.|++...+.++....    
T Consensus       271 --F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~-----------~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~  336 (802)
T PF13764_consen  271 --FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNS-----------NGNRLKDKILESGIVQDAIDYLLKHFPSLK  336 (802)
T ss_pred             --HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCC-----------chHHHHHHHHHhhHHHHHHHHHHHhCcccc
Confidence              2322232111   11111 122445555543100000           11456888899999998888775432    


Q ss_pred             ----HHH--------HHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH---HHHhccHhhHHHHH
Q 041050          339 ----API--------RRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAH---RTLSSSLTFRAEMR  402 (408)
Q Consensus       339 ----~~v--------~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~---~~L~~~~~~~~~~~  402 (408)
                          ++.        ...+...|.-||.+....+.++...+++.+-.|=..++.+.+-.+|-   .+|+.++.+...+.
T Consensus       337 ~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~  415 (802)
T PF13764_consen  337 NTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQ  415 (802)
T ss_pred             cCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHH
Confidence                222        23467788888888665566677778877666666666666666666   67777777654443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.26  E-value=0.00065  Score=47.93  Aligned_cols=55  Identities=18%  Similarity=0.178  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          239 PQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       239 ~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      |.++..++++|++++........-.-...++.|..+|.++++.|+..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5789999999999984443333334457899999999999999999999999875

...

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.25  E-value=0.017  Score=55.09  Aligned_cols=200  Identities=14%  Similarity=0.113  Sum_probs=131.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCchhHHHHHHhCC-HHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHHH
Q 041050          152 EDANVRIHAVKVVANLAAEEANQEKIVEAGG-LSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELIMA-QGGISL  228 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~-i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~  228 (408)
                      -++-.|..|++.|.++...++.|..+-.++- -..++.++.++ .+.+++.+.+-.+|.++.+ +...+.|-. .+-+.-
T Consensus       161 i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~~dli~d  239 (432)
T COG5231         161 IDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKMDDLIND  239 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence            3445788899999999999998888776654 46778888754 2478899999999999999 666544332 234566


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhC-Cc--hhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHH---HHH---------
Q 041050          229 LSTTAADAEDPQTLRMVAGAIANLCG-ND--KLQMKLRSEGGIRALLGMVRC--GHPDVLSQVAR---GIA---------  291 (408)
Q Consensus       229 Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~--~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~---aL~---------  291 (408)
                      |+.+.+....+.+.+.+++++.|++. .+  .....+..+++.+..-.++..  .|.++....-+   .+-         
T Consensus       240 li~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         240 LIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            77777666667899999999999984 32  233344444455544444432  34444321111   111         


Q ss_pred             -----Hhhc---cchhh----------hhHHH------------------------------hhhhhccCChhhHHHHHh
Q 041050          292 -----NFAK---CESRA----------ATQVR------------------------------FIRCTATGVKSGRSLLIE  323 (408)
Q Consensus       292 -----nL~~---~~~~~----------~~~~~------------------------------~~i~~~~~~~~~~~~i~~  323 (408)
                           .|-.   |+++.          ...+.                              +++.+  ..|+.+..+..
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr--~~PE~~~vl~K  397 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVR--ASPEINAVLSK  397 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHH--hCchHHHHHHH
Confidence                 1100   11110          00000                              01112  56889999999


Q ss_pred             cCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          324 DGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +|+=..++.++++++++|+-+|..|+..+..
T Consensus       398 yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         398 YGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999877643

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.24  E-value=0.00068  Score=47.81  Aligned_cols=55  Identities=20%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      |.++..|+++|++++.                 +.++.... .-..+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~-----------------~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAE-----------------GCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTT-----------------TTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhc-----------------ccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            5789999999999885                 33333333 3347899999999999999999999999875

...

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.081  Score=50.77  Aligned_cols=222  Identities=18%  Similarity=0.128  Sum_probs=156.8

Q ss_pred             hHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHH--HHHHcCCCCHHHHHHHHHHHHHh
Q 041050          132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSL--LMLLRSFEDETIRRVAAGAIANL  209 (408)
Q Consensus       132 ~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L--~~lL~~~~~~~v~~~A~~aL~nL  209 (408)
                      .+.-++..+..+.++..+..++.++-..|...+..++..+..-+.+++..-+..+  .++-.. -+.-+|......+..+
T Consensus       120 eillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaak-cndiaRvRVleLIiei  198 (524)
T KOG4413|consen  120 EILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAK-CNDIARVRVLELIIEI  198 (524)
T ss_pred             HHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhh-hhhHHHHHHHHHHHHH
Confidence            3444566777888889999999999999999999999999999999988776544  333332 2445666678888888


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc--CCCHHHHHHHH
Q 041050          210 AMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR--CGHPDVLSQVA  287 (408)
Q Consensus       210 a~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~--~~~~~v~~~a~  287 (408)
                      ..-++......-..|-+..|..-|...+|.-++..+......|+.....++.+-+.|.+..+.+++.  +.+|--.-.++
T Consensus       199 fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfral  278 (524)
T KOG4413|consen  199 FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRAL  278 (524)
T ss_pred             HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHH
Confidence            8877888888888898888887776667777888889999999988889999999999999999884  44554444344


Q ss_pred             HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC
Q 041050          288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG  366 (408)
Q Consensus       288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g  366 (408)
                      .....+-.  .++..-++        ......+++  -.+....+.+...+++.+..|.-+++-|.++.+.+.-+.+.|
T Consensus       279 mgfgkffg--keaimdvs--------eeaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTg  345 (524)
T KOG4413|consen  279 MGFGKFFG--KEAIMDVS--------EEAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTG  345 (524)
T ss_pred             HHHHHHhc--chHHhhcC--------HHHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccC
Confidence            33333321  11110000        000111111  133444556677899999999999999999887765555544

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.19  E-value=0.0049  Score=56.84  Aligned_cols=186  Identities=15%  Similarity=0.108  Sum_probs=108.0

Q ss_pred             cCCCHHHHHHHHHHHHHHcC-C--chhHHHHHHh--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050          150 ESEDANVRIHAVKVVANLAA-E--EANQEKIVEA--GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG  224 (408)
Q Consensus       150 ~s~~~~v~~~A~~aL~nLa~-~--~~~~~~i~~~--g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g  224 (408)
                      ++.+=+.|..|+.-|..+.. +  ......+++.  ..++.+...+.+ ....+...|+.++..|+..-...-+.. -..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-LRSKVSKTACQLLSDLARQLGSHFEPY-ADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence            35666788888888887765 3  2333333332  234455556653 456788889999988887622222222 233


Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050          225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV  304 (408)
Q Consensus       225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~  304 (408)
                      .+|.|+..+ .+....++..+..+|..++.+-.....+    .+..+...+.++++.++..++..+..+....+..    
T Consensus        95 ~l~~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~----  165 (228)
T PF12348_consen   95 LLPPLLKKL-GDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSD----  165 (228)
T ss_dssp             HHHHHHHGG-G---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHH-ccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch----
Confidence            578888887 4455688999999999998543311111    1344666778999999999998888887511100    


Q ss_pred             HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                               .+.......-..+++.+...+.+.+++||..|-.+++.+...
T Consensus       166 ---------~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  166 ---------SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             ----------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             ---------HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence                     011111111134778889999999999999999999999776

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.17  E-value=0.018  Score=62.36  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-HhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050          157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-NLAMNAEANQELIMAQGGISLLSTTAA  234 (408)
Q Consensus       157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-nLa~~~~~~~~~i~~~g~i~~Lv~lL~  234 (408)
                      |..|+..|+..-. ++=.-.--..-|..|-.++||.+ .-.+++..-+.+=+ -|+.+ +..|..+++.+|-...+..|.
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS-~a~ELrpiLVFIWAKILAvD-~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQS-SARELRPILVFIWAKILAVD-PSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhcc-chHhhhhhHHHHHHHHHhcC-chhHHHHHhccCceeEEEEec
Confidence            4445555554433 33333333445668999999995 44556554333333 46777 999999999999888887775


Q ss_pred             c--CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC-CHHHHHHHHHHHHHhhccchhhhhHHHhhhhh
Q 041050          235 D--AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG-HPDVLSQVARGIANFAKCESRAATQVRFIRCT  310 (408)
Q Consensus       235 ~--~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~-~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~  310 (408)
                      .  .-+++=+.+++-+|+-++ +.+-.|....+.+.+..=+..|.++ ++-++.-+|-+|+.|=.               
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~---------------  629 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE---------------  629 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---------------
Confidence            4  224578889999999999 6677788888888888777888764 78888889999998875               


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       311 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                        .++..|=.-+++++...|..++..+-++||..|+.||+++-.+
T Consensus       630 --d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~  672 (1387)
T KOG1517|consen  630 --DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN  672 (1387)
T ss_pred             --hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence              3444444446778999999999999999999999999998875

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.051  Score=57.53  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=91.0

Q ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050          149 LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL  228 (408)
Q Consensus       149 L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~  228 (408)
                      |++.+.-+.-.|+.+|++++..+-.++      ..|.+-.++. +.++-+|+.|+-+...+-.-.|+.-+.+     ++.
T Consensus       116 L~s~nq~vVglAL~alg~i~s~Emard------lapeVe~Ll~-~~~~~irKKA~Lca~r~irK~P~l~e~f-----~~~  183 (866)
T KOG1062|consen  116 LNSSNQYVVGLALCALGNICSPEMARD------LAPEVERLLQ-HRDPYIRKKAALCAVRFIRKVPDLVEHF-----VIA  183 (866)
T ss_pred             ccCCCeeehHHHHHHhhccCCHHHhHH------hhHHHHHHHh-CCCHHHHHHHHHHHHHHHHcCchHHHHh-----hHH
Confidence            456777788889999999887433332      3677777888 4789999999888877776646665555     334


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc----C-----------CCHHHHHHHHHHHHH
Q 041050          229 LSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR----C-----------GHPDVLSQVARGIAN  292 (408)
Q Consensus       229 Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~----~-----------~~~~v~~~a~~aL~n  292 (408)
                      -..+| .+.+.+|....+..+..+| .+++.-..+.+  .++-++..|+    .           +||-++-...+.|+-
T Consensus       184 ~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLri  260 (866)
T KOG1062|consen  184 FRKLL-CEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRI  260 (866)
T ss_pred             HHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHH
Confidence            44555 3456678777888888888 55555555544  3344444432    1           367777777887777


Q ss_pred             hhccchhhh
Q 041050          293 FAKCESRAA  301 (408)
Q Consensus       293 L~~~~~~~~  301 (408)
                      |...+.++.
T Consensus       261 LGq~d~daS  269 (866)
T KOG1062|consen  261 LGQNDADAS  269 (866)
T ss_pred             hcCCCccHH
Confidence            776554443

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.10  E-value=0.069  Score=53.18  Aligned_cols=223  Identities=17%  Similarity=0.143  Sum_probs=140.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .+.+..++-+++.++|..+.+++..+..++..-..+.+.+.---++.-|..+ ....=|.+|...+..+... +...+. 
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~-~~~~~~-  104 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEI-KKGPKE-  104 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHh-cCCccc-
Confidence            3444444445559999999999999999888888888876544444445432 3455677899888877665 333322 


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                      +-.|.+..++.+. +.++...+..+..+|+-++ .||+.   +...||++.|.+.+-.+..++...++.++..+-     
T Consensus       105 ~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~P~l---v~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL-----  175 (371)
T PF14664_consen  105 IPRGVVRALVAIA-EHEDDRLRRICLETLCELALLNPEL---VAECGGIRVLLRALIDGSFSISESLLDTLLYLL-----  175 (371)
T ss_pred             CCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhCHHH---HHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh-----
Confidence            2456677888887 4566689999999999999 77654   667899999999887666667777888888887     


Q ss_pred             hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-c------CCCH--HHHHHHHHHHHHHccCchhHHHHH--hCCcH
Q 041050          300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-N------NEAA--PIRRHIELALCHLAQHEVNAREMI--SGGAL  368 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~------~~~~--~v~~~a~~aL~~La~~~~~~~~l~--~~g~i  368 (408)
                                   .+|..|.-+...--+..+..-. .      .++.  +.-..+..++..+-..=+..-.+.  +..++
T Consensus       176 -------------d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l  242 (371)
T PF14664_consen  176 -------------DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL  242 (371)
T ss_pred             -------------CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence                         3444444343322233222211 1      1222  234445555555444322222222  23577


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 041050          369 WELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       369 ~~L~~ll~~~~~~~~~~~A~~  389 (408)
                      ..|+..+..++.+ ++.....
T Consensus       243 ksLv~~L~~p~~~-ir~~Ild  262 (371)
T PF14664_consen  243 KSLVDSLRLPNPE-IRKAILD  262 (371)
T ss_pred             HHHHHHHcCCCHH-HHHHHHH
Confidence            7888888765544 4444443

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.03  E-value=0.01  Score=60.62  Aligned_cols=135  Identities=15%  Similarity=0.155  Sum_probs=105.9

Q ss_pred             HHHHHHHcCCchhHHHHHHhCCHHHHHHHH---------cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050          161 VKVVANLAAEEANQEKIVEAGGLSSLLMLL---------RSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST  231 (408)
Q Consensus       161 ~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL---------~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~  231 (408)
                      +.+|.-++.++.+.+.+....++..|+.+-         ....+..+...|+.+|+|+...++..|..+++.|+.+.++.
T Consensus         2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~   81 (446)
T PF10165_consen    2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE   81 (446)
T ss_pred             HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence            456677777888888888888888888876         43467889999999999999999999999999999999999


Q ss_pred             HhhcC----CCHHHHHHHHHHHHHHh-CCchhHHHHHh-cccHHHHHHhhc----C-------------CCHHHHHHHHH
Q 041050          232 TAADA----EDPQTLRMVAGAIANLC-GNDKLQMKLRS-EGGIRALLGMVR----C-------------GHPDVLSQVAR  288 (408)
Q Consensus       232 lL~~~----~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-~g~l~~L~~lL~----~-------------~~~~v~~~a~~  288 (408)
                      .|...    .+.++.-...+.+.-++ .++..+..+++ .+++..|...+.    .             .+.....+++.
T Consensus        82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLK  161 (446)
T PF10165_consen   82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILK  161 (446)
T ss_pred             HHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHH
Confidence            99654    25678888888888887 66777777765 477777776442    1             13345677889


Q ss_pred             HHHHhhc
Q 041050          289 GIANFAK  295 (408)
Q Consensus       289 aL~nL~~  295 (408)
                      ++.|++.
T Consensus       162 llFNit~  168 (446)
T PF10165_consen  162 LLFNITL  168 (446)
T ss_pred             HHHHhhh
Confidence            9999985

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.94  E-value=0.027  Score=58.86  Aligned_cols=185  Identities=12%  Similarity=0.109  Sum_probs=105.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-  219 (408)
                      -+-++.+|++.-+-+|..|+.+|..+.. .|+.-     ...+|.|..-|. ++|+.|+-+|+.+++.||.-+|.+.-. 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLe-DpDp~V~SAAV~VICELArKnPknyL~L  219 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLE-DPDPSVVSAAVSVICELARKNPQNYLQL  219 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhcc-CCCchHHHHHHHHHHHHHhhCCcccccc
Confidence            4566777788888888888888777665 44322     114677777777 467778888888888887765554321 


Q ss_pred             -------HH-------------------------hcCcHHHHHHHhhcCCCHHHHHHHHHHHH--HHh-CCchhHHHHHh
Q 041050          220 -------IM-------------------------AQGGISLLSTTAADAEDPQTLRMVAGAIA--NLC-GNDKLQMKLRS  264 (408)
Q Consensus       220 -------i~-------------------------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~--nL~-~~~~~~~~i~~  264 (408)
                             ++                         ....+++|.+++.++.-..+.-.++.++.  |++ +.+.+...+. 
T Consensus       220 AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiq-  298 (877)
T KOG1059|consen  220 APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQ-  298 (877)
T ss_pred             cHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHH-
Confidence                   11                         11123444444433222233333332222  222 2112211111 


Q ss_pred             cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHH
Q 041050          265 EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRH  344 (408)
Q Consensus       265 ~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~  344 (408)
                       =++..|-.++.++|+.++.-.+-|++-+..                 .|+...++..+     .++++|...+..+|..
T Consensus       299 -LCvqKLr~fiedsDqNLKYlgLlam~KI~k-----------------tHp~~Vqa~kd-----lIlrcL~DkD~SIRlr  355 (877)
T KOG1059|consen  299 -LCVQKLRIFIEDSDQNLKYLGLLAMSKILK-----------------THPKAVQAHKD-----LILRCLDDKDESIRLR  355 (877)
T ss_pred             -HHHHHHhhhhhcCCccHHHHHHHHHHHHhh-----------------hCHHHHHHhHH-----HHHHHhccCCchhHHH
Confidence             134445555667777777777777777775                 45554433332     5677777778888888


Q ss_pred             HHHHHHHHccCc
Q 041050          345 IELALCHLAQHE  356 (408)
Q Consensus       345 a~~aL~~La~~~  356 (408)
                      |.-.|.-+....
T Consensus       356 ALdLl~gmVskk  367 (877)
T KOG1059|consen  356 ALDLLYGMVSKK  367 (877)
T ss_pred             HHHHHHHHhhhh
Confidence            887777776543

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.86  E-value=0.014  Score=61.67  Aligned_cols=232  Identities=15%  Similarity=0.095  Sum_probs=160.3

Q ss_pred             hhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      ..+.+. +........+..||...|+.+.....+..+..+..+|. .+.+. ..+.    ...++++.+++.++....--
T Consensus       485 ~~E~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~-~~~~----~~v~~~~~s~~~~d~~~~en  559 (748)
T KOG4151|consen  485 KNEYLAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFP-GERS----YEVVKPLDSALHNDEKGLEN  559 (748)
T ss_pred             HHHHHhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCC-CCch----hhhhhhhcchhhhhHHHHHH
Confidence            334442 34555567889999999999999888899999999998 44431 1111    22466677777642222222


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHH-HHHh-cccHHHHHHhhcC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQM-KLRS-EGGIRALLGMVRC  277 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~-~i~~-~g~l~~L~~lL~~  277 (408)
                      -.++.++.||+..++..++.|...-+++.+-.++ ..+++..++.++..+.||...+..-. .+.+ ..+++.....+..
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~-~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~  638 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELM-TEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV  638 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHh-hcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence            2388899999998888888899888888876665 46788999999999999997766554 4445 4566666666666


Q ss_pred             CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH-HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050          278 GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS-LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-  355 (408)
Q Consensus       278 ~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~-~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-  355 (408)
                      .+......+++++..++.                 -+..++. ...-..+...++..+.++++.++......+.|+... 
T Consensus       639 ~~E~~~lA~a~a~a~I~s-----------------v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~  701 (748)
T KOG4151|consen  639 ADEKFELAGAGALAAITS-----------------VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL  701 (748)
T ss_pred             hhhHHhhhccccccchhh-----------------cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence            666677777788886664                 2333333 333446777889999999999999988888885544 


Q ss_pred             chhHHHHHhCCcHHHHHHHHh
Q 041050          356 EVNAREMISGGALWELVRISR  376 (408)
Q Consensus       356 ~~~~~~l~~~g~i~~L~~ll~  376 (408)
                      .+-+..+.+...++.+..+-.
T Consensus       702 ~ei~~~~~~~~~~~~l~~~~~  722 (748)
T KOG4151|consen  702 FEIAEKIFETEVMELLSGLQK  722 (748)
T ss_pred             HHHHHHhccchHHHHHHHHHH
Confidence            444555666666666655444

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.76  E-value=0.084  Score=52.57  Aligned_cols=184  Identities=12%  Similarity=0.062  Sum_probs=130.7

Q ss_pred             CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC-CCHHHHHHHHHH
Q 041050          170 EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADA-EDPQTLRMVAGA  248 (408)
Q Consensus       170 ~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~v~~~a~~a  248 (408)
                      .+..+..+.-..-.+.+..++-+ ++..+|..+..++..+..+ +..-..+.+.+.--.++.-|... ....=+.+|...
T Consensus        14 ~p~l~~~~~~~~~~~~i~~~lL~-~~~~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkl   91 (371)
T PF14664_consen   14 HPTLKYDLVLSFFGERIQCMLLS-DSKEVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKL   91 (371)
T ss_pred             CchhhhhhhHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHH
Confidence            44444444333334555544442 3589999999999999999 88888888887555555555433 333346688888


Q ss_pred             HHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH
Q 041050          249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP  328 (408)
Q Consensus       249 L~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~  328 (408)
                      +..+..-+..... +..|.++.|+....+++...+..|..+|+.++.                 .+|+   .+...|++.
T Consensus        92 iR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l-----------------~~P~---lv~~~gG~~  150 (371)
T PF14664_consen   92 IRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELAL-----------------LNPE---LVAECGGIR  150 (371)
T ss_pred             HHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh-----------------hCHH---HHHHcCCHH
Confidence            8877633222222 356788999999988888999999999999996                 4444   466889999


Q ss_pred             HHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050          329 WIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISR  376 (408)
Q Consensus       329 ~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~  376 (408)
                      .|.+.+-.+..++....+.++.++-..+..++.+...--++.+..-..
T Consensus       151 ~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apft  198 (371)
T PF14664_consen  151 VLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFT  198 (371)
T ss_pred             HHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhh
Confidence            999988877777888999999999999888877765444555555443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.015  Score=59.14  Aligned_cols=226  Identities=14%  Similarity=0.107  Sum_probs=133.1

Q ss_pred             HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      .-++.+++++..++..+..+|..||..|.|++.-........-......|..+.. +.+..++. ++..+-.+-.+    
T Consensus        81 Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsa-Dsd~~V~~-~aeLLdRLikd----  154 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSA-DSDQNVRG-GAELLDRLIKD----  154 (675)
T ss_pred             HHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhc-CCcccccc-HHHHHHHHHHH----
Confidence            3445689999999999999999999999999762211111111112344445554 34555555 44444333222    


Q ss_pred             HHHHHh----cCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050          217 QELIMA----QGGISLLSTTAA---DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG  289 (408)
Q Consensus       217 ~~~i~~----~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a  289 (408)
                         |+-    +=-++.++.+|+   ...+|.++...+.-|.-|-.-|.....=.-...++-|..+|..++++|+..+-.+
T Consensus       155 ---IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~  231 (675)
T KOG0212|consen  155 ---IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTL  231 (675)
T ss_pred             ---hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHH
Confidence               221    113444555543   3357788887777777665444332211123456678888999999999888888


Q ss_pred             HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHH
Q 041050          290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALW  369 (408)
Q Consensus       290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~  369 (408)
                      +.++-..           |-   ..|..   +--...++.++..+.+.++.++.-|..-|..+..-....--..-+|.+.
T Consensus       232 l~~fL~e-----------I~---s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~  294 (675)
T KOG0212|consen  232 LSEFLAE-----------IR---SSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILT  294 (675)
T ss_pred             HHHHHHH-----------Hh---cCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhh
Confidence            8887640           00   11211   1223577888889999999998888776666665443333333555566


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q 041050          370 ELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       370 ~L~~ll~~~~~~~~~~~A~  388 (408)
                      .+...+.+.....++.+|.
T Consensus       295 ~iLpc~s~~e~~~i~~~a~  313 (675)
T KOG0212|consen  295 AILPCLSDTEEMSIKEYAQ  313 (675)
T ss_pred             hcccCCCCCccccHHHHHH
Confidence            6666555443334554444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.70  E-value=0.02  Score=51.47  Aligned_cols=113  Identities=19%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHHHHHHcCCchhHHHHHHh----------------CCHHHHHHHHcC-----CCCHHHHHHHHHHHHHhc
Q 041050          152 EDANVRIHAVKVVANLAAEEANQEKIVEA----------------GGLSSLLMLLRS-----FEDETIRRVAAGAIANLA  210 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~~~~~~~~i~~~----------------g~i~~L~~lL~~-----~~~~~v~~~A~~aL~nLa  210 (408)
                      +....-..++++|.||+..+.....++..                ..+..|+.++..     .+...-..+.+.+++|++
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            34445567889999999877776655432                236788887754     123445666889999999


Q ss_pred             cCChhhHHHHHhcC--c--HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcc
Q 041050          211 MNAEANQELIMAQG--G--ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEG  266 (408)
Q Consensus       211 ~~~~~~~~~i~~~g--~--i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g  266 (408)
                      .. +..|+.+.+..  .  +..|+.+. ++.++.-+.-++++|.|+|-+...+..+....
T Consensus        87 ~~-~~gR~~~l~~~~~~~~l~kLl~ft-~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~  144 (192)
T PF04063_consen   87 QL-PEGRQFFLDPQRYDGPLQKLLPFT-EHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDD  144 (192)
T ss_pred             CC-HHHHHHHhCchhhhhHHHHHHHHh-ccCcHHHHHHHHHHHHHhhccHhHHHHhcCch
Confidence            99 99999998643  3  55666665 44576778899999999998888888877643

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.024  Score=58.87  Aligned_cols=148  Identities=20%  Similarity=0.225  Sum_probs=103.9

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH--H----HHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQ--E----KIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~--~----~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      ++|.|.++|.+++...++.|..+|..++.+....  .    +-.+ -.+|+++...+ ++++.+|..|++.+-..-..  
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~-~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~--  204 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLN-IMIPKFLQFFK-HPSPKIRSHAVGCVNQFIII--  204 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchH-HhHHHHHHHHh-CCChhHHHHHHhhhhheeec--
Confidence            4789999999999999999999999998743221  1    1111 14899999999 46899999999998766554  


Q ss_pred             hhHHHHHhcC-cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          215 ANQELIMAQG-GISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       215 ~~~~~i~~~g-~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                      ..+..+..-+ -+..|..+ ..+++|.|+..+|+++..|-.-  +..--.+  .+.+..++...+..|..|--+||.-..
T Consensus       205 ~~qal~~~iD~Fle~lFal-anD~~~eVRk~vC~alv~Llevr~dkl~phl--~~IveyML~~tqd~dE~VALEACEFwl  281 (885)
T KOG2023|consen  205 QTQALYVHIDKFLEILFAL-ANDEDPEVRKNVCRALVFLLEVRPDKLVPHL--DNIVEYMLQRTQDVDENVALEACEFWL  281 (885)
T ss_pred             CcHHHHHHHHHHHHHHHHH-ccCCCHHHHHHHHHHHHHHHHhcHHhcccch--HHHHHHHHHHccCcchhHHHHHHHHHH
Confidence            2222222211 23445555 4788999999999999988621  1111111  355666777777888889999998888


Q ss_pred             Hhhc
Q 041050          292 NFAK  295 (408)
Q Consensus       292 nL~~  295 (408)
                      .++.
T Consensus       282 a~ae  285 (885)
T KOG2023|consen  282 ALAE  285 (885)
T ss_pred             HHhc
Confidence            8874

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.0085  Score=60.62  Aligned_cols=136  Identities=8%  Similarity=0.029  Sum_probs=107.6

Q ss_pred             HHHHHH--HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050          202 AAGAIA--NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       202 A~~aL~--nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      ++|++.  .++..-...|.-+.+......|+.+|+ .++..+.-.+.+.++|+. .-...+..+.+.|.+..|++++.++
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls-~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALS-NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhc-CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            444444  444443445666777788889999994 455556667788899997 6778889999999999999999988


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      |..++++..|.+.-+..                 |.. .-+-.+...-++..++.+.+.++..++..+..++.|+.++
T Consensus       486 DdaLqans~wvlrHlmy-----------------ncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~  546 (743)
T COG5369         486 DDALQANSEWVLRHLMY-----------------NCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCD  546 (743)
T ss_pred             hhhhhhcchhhhhhhhh-----------------cCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccc
Confidence            99999999999998886                 222 2234556677889999999999999999999999999985

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.65  E-value=0.056  Score=46.86  Aligned_cols=118  Identities=11%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             HHHHHhcCHHHHHHhhcCCC------HHHHHHHHHHHHHHcCCch-hHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHH
Q 041050          134 TKLFEQVGLHKILSLLESED------ANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGA  205 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~------~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~a  205 (408)
                      .+++..+|++.|++++.++.      .+...+++.++..|-.... .+ ..+...-|.+++...+... |+.+...|+..
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            46888999999999998655      4777888888888776333 44 3455556888888887544 68899999999


Q ss_pred             HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050          206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~  253 (408)
                      |-++..+++.....+.+.=-++.|+..|. ..+++++..+...+-.|.
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq-~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQ-VSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            99999997777888888778889999984 488899998888887775

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.65  E-value=0.0055  Score=50.39  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=60.1

Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          225 GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      .+..|+.+|..+.|+.+...||.=|+.++ ..|..+..+-+.|+=..++.++.++|++|+.+|+.|+.-+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            45678899977778999999999999999 77899999988999999999999999999999999998875

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.05  Score=57.00  Aligned_cols=180  Identities=12%  Similarity=0.115  Sum_probs=106.1

Q ss_pred             HHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCC
Q 041050          161 VKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAED  238 (408)
Q Consensus       161 ~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~  238 (408)
                      .-||.-|+.  .++....+     -+-++.+|++ .-+-+|..|+.+++.+....|+.-..     ++|.|++-| +++|
T Consensus       127 giAL~GLS~fvTpdLARDL-----a~Dv~tLL~s-skpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkL-eDpD  194 (877)
T KOG1059|consen  127 GLALSGLSCIVTPDLARDL-----ADDVFTLLNS-SKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKL-EDPD  194 (877)
T ss_pred             hheecccccccCchhhHHH-----HHHHHHHHhc-CchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhc-cCCC
Confidence            335555554  55555443     4567888885 56789999999999988764544432     579999998 7899


Q ss_pred             HHHHHHHHHHHHHHh-CCchhHH--------HHH--hccc-HHHHHHhh---cCCCHHHHHHHHHHHHHhhccchhh---
Q 041050          239 PQTLRMVAGAIANLC-GNDKLQM--------KLR--SEGG-IRALLGMV---RCGHPDVLSQVARGIANFAKCESRA---  300 (408)
Q Consensus       239 ~~v~~~a~~aL~nL~-~~~~~~~--------~i~--~~g~-l~~L~~lL---~~~~~~v~~~a~~aL~nL~~~~~~~---  300 (408)
                      |+|+..|+.+|+-|+ .||.+.-        .+.  .+++ +-.++.+.   ..-.|.+.+..+.-|.|+.. ...+   
T Consensus       195 p~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~-sT~AmSL  273 (877)
T KOG1059|consen  195 PSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELME-STVAMSL  273 (877)
T ss_pred             chHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHH-hhHHHHH
Confidence            999999999999999 8887632        222  2333 12233322   23345555555544555442 0000   


Q ss_pred             hhHHHhhh---hhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          301 ATQVRFIR---CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       301 ~~~~~~~i---~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      ..+-+.+|   .-..|.+++-..+.  =++..|--++.+.++.++.-++.++..++.-
T Consensus       274 lYECvNTVVa~s~s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~kt  329 (877)
T KOG1059|consen  274 LYECVNTVVAVSMSSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKT  329 (877)
T ss_pred             HHHHHHHheeehhccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence            00000110   01123222211111  1566777777778888888888888887753

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.57  E-value=0.27  Score=45.43  Aligned_cols=136  Identities=14%  Similarity=0.163  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHcCCchhHHHHHHhCC---HHHHHHH-HcCCCCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHH
Q 041050          158 IHAVKVVANLAAEEANQEKIVEAGG---LSSLLML-LRSFEDETIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTT  232 (408)
Q Consensus       158 ~~A~~aL~nLa~~~~~~~~i~~~g~---i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~l  232 (408)
                      .+|...|.-++..|+.+..+...-.   +-+++.. ..+.+.+..|-.++++|+.|..++ ++....+..++.||..+..
T Consensus        97 cnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri  176 (293)
T KOG3036|consen   97 CNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI  176 (293)
T ss_pred             HHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence            4455556667779999999988753   2222222 233346788889999999998863 4455667789999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc-c---c----H-HHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE-G---G----I-RALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~-g---~----l-~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      + +..++-....|..++.-+-.|+.+-..++.. .   .    + +++..+.+.+++.+.+++.++..+|+
T Consensus       177 m-e~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLs  246 (293)
T KOG3036|consen  177 M-ESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLS  246 (293)
T ss_pred             H-hcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            8 4556677778888888888888776666542 1   1    2 33334557789999999999999998

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=96.52  E-value=0.12  Score=51.83  Aligned_cols=135  Identities=20%  Similarity=0.217  Sum_probs=102.3

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCC----chhHHHHHHhCCHHHHHHHHcCC------CCHHHHHHHHHHHHHhccC
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAE----EANQEKIVEAGGLSSLLMLLRSF------EDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~----~~~~~~i~~~g~i~~L~~lL~~~------~~~~v~~~A~~aL~nLa~~  212 (408)
                      ..+..+++..+.+-|..|+-.+..++.+    ..++..+++.-|.+-+-.+|.+.      +|.-.+..++.+|+-.|.+
T Consensus        14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            4467777778888888888888888873    35677899999998888888542      1333455577888888888


Q ss_pred             ChhhHHHHHhcCcHHHHHHHhhcCCCHH------HHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050          213 AEANQELIMAQGGISLLSTTAADAEDPQ------TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~------v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                       |+....=---+.||.|.+.+....|++      +...+-.+|..+++.+...+.++..|+++.+.++-.-+
T Consensus        94 -pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~  164 (698)
T KOG2611|consen   94 -PELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELP  164 (698)
T ss_pred             -hhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCC
Confidence             765432111235899999998776666      77788889999998899999999999999999877543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.51  E-value=0.007  Score=49.80  Aligned_cols=71  Identities=21%  Similarity=0.371  Sum_probs=61.6

Q ss_pred             cHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050          267 GIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI  345 (408)
Q Consensus       267 ~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a  345 (408)
                      .++.|+.+| .+.|+.+..-||.=|+.++.                 .+|.++..+.+.|+-..+++++.+++++|+.+|
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr-----------------~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eA  106 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVR-----------------HYPNGRNIIEKLGAKERVMELMNHEDPEVRYEA  106 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHH-----------------H-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHH-----------------HChhHHHHHHhcChHHHHHHHhcCCCHHHHHHH
Confidence            477899999 56788999999999999997                 689999999999999999999999999999999


Q ss_pred             HHHHHHHcc
Q 041050          346 ELALCHLAQ  354 (408)
Q Consensus       346 ~~aL~~La~  354 (408)
                      ..++..+..
T Consensus       107 L~avQklm~  115 (119)
T PF11698_consen  107 LLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.50  E-value=0.051  Score=50.92  Aligned_cols=99  Identities=13%  Similarity=0.145  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh
Q 041050          155 NVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA  233 (408)
Q Consensus       155 ~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL  233 (408)
                      .....|+++|.-++- +|..+..+....++..|+.+|....++.++..++.+|..+..+++.|...+-+.+|+..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            345668888888877 9999999999999999999997667889999999999988888899999999999999999998


Q ss_pred             hc-CCCHHHHHHHHHHHHHHh
Q 041050          234 AD-AEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       234 ~~-~~~~~v~~~a~~aL~nL~  253 (408)
                      ++ +.+..++..++..|.-..
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHH
Confidence            63 345567777777776554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.48  E-value=0.0086  Score=61.46  Aligned_cols=207  Identities=14%  Similarity=0.174  Sum_probs=124.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC--Cchh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA--EEAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      |..++.+|++..+++|.+|+...+.|+-  ..-. ...+...|.  .|..-|. .+.+++....++|++.+... ...+.
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lg-e~ypEvLgsil~Ai~~I~sv-~~~~~  681 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLG-EDYPEVLGSILKAICSIYSV-HRFRS  681 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcC-cccHHHHHHHHHHHHHHhhh-hcccc
Confidence            5566788999999999999999998864  1101 111112221  1334444 46788888888888877654 33322


Q ss_pred             HH-HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh----HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          219 LI-MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL----QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       219 ~i-~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~----~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      +- --.|.+|.|..+| ++.+..+..+....+..+|.+..-    ++-+   ...=-|+.+|++-+.+++++|..++..+
T Consensus       682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWM---RICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            11 1245678888898 567788999999999999844322    2211   1122288889999999999999888888


Q ss_pred             hcc-chhh-hhHHH---------hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          294 AKC-ESRA-ATQVR---------FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       294 ~~~-~~~~-~~~~~---------~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      +.. ++.. ...+.         ..+|+..+..-.-..-.-..++|.|+.=-..++..|+.-+..+++.+=...
T Consensus       758 s~aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyi  831 (975)
T COG5181         758 SRAIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYI  831 (975)
T ss_pred             HhhcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHH
Confidence            751 1111 00000         012321111111111112345666666666678888888888888877663

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.47  E-value=0.11  Score=45.07  Aligned_cols=122  Identities=11%  Similarity=0.137  Sum_probs=88.7

Q ss_pred             HHHHHhcCcHHHHHHHhhcCCC-----HHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC--CCHHHHHHHHHH
Q 041050          217 QELIMAQGGISLLSTTAADAED-----PQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC--GHPDVLSQVARG  289 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~-----~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~--~~~~v~~~a~~a  289 (408)
                      ...+...||++.|+.++.++.+     ..+...++.++..|.......=...+...++.++.....  .|+.+...+...
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            4567888999999999976664     467778888888876322211134445567778877743  368899999999


Q ss_pred             HHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      |-++..                 .++..-..+.+.=-++.|+.+++..+++++.++...+..|-..
T Consensus        84 LEs~Vl-----------------~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k  132 (160)
T PF11841_consen   84 LESIVL-----------------NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK  132 (160)
T ss_pred             HHHHHh-----------------CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            999985                 3444444444544589999999999999999999888877655

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.46  E-value=0.025  Score=59.39  Aligned_cols=180  Identities=16%  Similarity=0.166  Sum_probs=113.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ..++..|++..+.+|.+|+..+..|+-  ..-.-.++...-|+ .|..-|. .+.+++.-..++||+.+... ..--++.
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv-vLyEylg-eeypEvLgsILgAikaI~nv-igm~km~  878 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV-VLYEYLG-EEYPEVLGSILGAIKAIVNV-IGMTKMT  878 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH-HHHHhcC-cccHHHHHHHHHHHHHHHHh-ccccccC
Confidence            445577889999999999999998875  22222233322121 3455566 46788888777776665443 1100010


Q ss_pred             -HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-ch---hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          221 -MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DK---LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       221 -~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~---~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                       --.|.+|.|..+| ++.+..++.+....+..+|.+ ++   .|+-+   ...=-|+.+|++.+..+++.|..++..++.
T Consensus       879 pPi~dllPrltPIL-knrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPIL-KNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhh-hhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence             0134578888888 568889999999999999933 22   22221   112228889999999999999999999886


Q ss_pred             cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                                              ++.-..++..|+..|+..+...|.+...++.-.+
T Consensus       955 ------------------------aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVa  988 (1172)
T KOG0213|consen  955 ------------------------AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVA  988 (1172)
T ss_pred             ------------------------hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhh
Confidence                                    2223345666667776665555555444444433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.088  Score=50.53  Aligned_cols=173  Identities=20%  Similarity=0.219  Sum_probs=129.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcC-Cchh----HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAA-EEAN----QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~----~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      |.|-.-|..++..++..++..++-+.. .+.|    ..-++..|.++.++..+. .+|..+.+.|...|..++.. +..-
T Consensus        85 pdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialf-paal  162 (524)
T KOG4413|consen   85 PDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALF-PAAL  162 (524)
T ss_pred             HHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhc-HHHH
Confidence            334445667889999999999888876 3322    234457777899999998 46889999999999999999 9999


Q ss_pred             HHHHhcCcHHH--HHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHh
Q 041050          218 ELIMAQGGISL--LSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANF  293 (408)
Q Consensus       218 ~~i~~~g~i~~--Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL  293 (408)
                      +.|++..-...  +.++..++.+ -++..+...|..+. -++..-......|.+..|..=++ ..|.-|+..|......|
T Consensus       163 eaiFeSellDdlhlrnlaakcnd-iaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  163 EAIFESELLDDLHLRNLAAKCND-IARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHhcccccCChHHHhHHHhhhhh-HHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            99998776653  4555555555 45666777777776 66777677777888888777775 57888899999999998


Q ss_pred             hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050          294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      +.                  ...+++-+.+.|++..++..+..
T Consensus       242 ae------------------teHgreflaQeglIdlicnIIsG  266 (524)
T KOG4413|consen  242 AE------------------TEHGREFLAQEGLIDLICNIISG  266 (524)
T ss_pred             HH------------------HhhhhhhcchhhHHHHHHHHhhC
Confidence            84                  55666666777888888777753

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=96.26  E-value=0.061  Score=49.49  Aligned_cols=145  Identities=18%  Similarity=0.209  Sum_probs=91.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      ++.+...+++....+...|+.++..++.  ..... ..++ ..+|.|+..+.+ ....++..|..+|..+....+.....
T Consensus        55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~-~~~~-~~l~~Ll~~~~~-~~~~i~~~a~~~L~~i~~~~~~~~~~  131 (228)
T PF12348_consen   55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFE-PYAD-ILLPPLLKKLGD-SKKFIREAANNALDAIIESCSYSPKI  131 (228)
T ss_dssp             -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGH-HHHH-HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHH-HHHH-HHHHHHHHHHcc-ccHHHHHHHHHHHHHHHHHCCcHHHH
Confidence            4566677777888899999999999887  33322 2222 258999999984 56788999999999998873311111


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHHHh----cccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKLRS----EGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i~~----~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      +     ++.+... ..+.+|.++..++..+..+...-. ....+..    ...++.+...+.+++++|+..|-.++..+.
T Consensus       132 ~-----~~~l~~~-~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~  205 (228)
T PF12348_consen  132 L-----LEILSQG-LKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALY  205 (228)
T ss_dssp             H-----HHHHHHH-TT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred             H-----HHHHHHH-HhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence            1     2333344 467889999999999998872222 1111111    346777888889999999999999999997


Q ss_pred             c
Q 041050          295 K  295 (408)
Q Consensus       295 ~  295 (408)
                      .
T Consensus       206 ~  206 (228)
T PF12348_consen  206 S  206 (228)
T ss_dssp             H
T ss_pred             H
Confidence            6

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=96.23  E-value=0.026  Score=42.32  Aligned_cols=68  Identities=10%  Similarity=0.003  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhccc
Q 041050          199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG  267 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~  267 (408)
                      .+.|+|+++|++.. +.....+.+.+.++.++++..+++...+|-.+..+|.-++.+.+..+.+.+.|.
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~gW   71 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELGW   71 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcCC
Confidence            56799999999998 999999999999999999998889999999999999999999999998888775

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.13  E-value=0.4  Score=51.51  Aligned_cols=168  Identities=14%  Similarity=0.142  Sum_probs=101.8

Q ss_pred             hcCCCHHHHHHHHH-HHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050          149 LESEDANVRIHAVK-VVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS  227 (408)
Q Consensus       149 L~s~~~~v~~~A~~-aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~  227 (408)
                      +.+.+...|..|++ +++.++.+++...      -.+.+++... +.|.++++..--=|-+.+..+|  ...+.   ++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~dmss------Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P--~~~lL---avN   95 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGEDMSS------LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKP--ELALL---AVN   95 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCCChHH------HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCH--HHHHH---HHH
Confidence            55555655655554 4456655444211      2455555555 4677777766655666666633  22221   233


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI  307 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~  307 (408)
                      .+..=+ .+++|.+|-.|++++.-|-. ++    +. ...++++.+.+.++++.|++.|+-|+.++=.            
T Consensus        96 ti~kDl-~d~N~~iR~~AlR~ls~l~~-~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~------------  156 (757)
T COG5096          96 TIQKDL-QDPNEEIRGFALRTLSLLRV-KE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYR------------  156 (757)
T ss_pred             HHHhhc-cCCCHHHHHHHHHHHHhcCh-HH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHh------------
Confidence            344443 55777888877777766521 11    11 2346667778888888888888888888753            


Q ss_pred             hhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                           -++   +.+-+.|.+..+..++...+|.+..+|..+|..+...
T Consensus       157 -----ld~---~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         157 -----LDK---DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----cCH---hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence                 122   2344567777777788888888888888888777654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.05  E-value=0.65  Score=48.11  Aligned_cols=191  Identities=17%  Similarity=0.142  Sum_probs=116.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      +|.++.-+.+....+|..|..+...+.. -+....+.    .+|.++.-+... .=....+++..+..++.. ...+-..
T Consensus       218 lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~----llpsll~~l~~~-kWrtK~aslellg~m~~~-ap~qLs~  291 (569)
T KOG1242|consen  218 LPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKL----LLPSLLGSLLEA-KWRTKMASLELLGAMADC-APKQLSL  291 (569)
T ss_pred             HHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhH----hhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh-chHHHHH
Confidence            3444455556778888888777766543 22111111    134444444321 224566688888888877 6666677


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHh-----------------------------cccH
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRS-----------------------------EGGI  268 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~-----------------------------~g~l  268 (408)
                      .-...+|.+.+.| .+.+|.++..+..++.+++   .|++.+..+-.                             .-.+
T Consensus       292 ~lp~iiP~lsevl-~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psL  370 (569)
T KOG1242|consen  292 CLPDLIPVLSEVL-WDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSL  370 (569)
T ss_pred             HHhHhhHHHHHHH-ccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhH
Confidence            7777899999998 5688999999999999998   44443222100                             0012


Q ss_pred             HHHHHhh----cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHH
Q 041050          269 RALLGMV----RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRH  344 (408)
Q Consensus       269 ~~L~~lL----~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~  344 (408)
                      ..++.++    ...+..+++.++-.+.|++.               +..++....-+.. .++|.|-..+....|++|..
T Consensus       371 almvpiL~R~l~eRst~~kr~t~~IidNm~~---------------LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~v  434 (569)
T KOG1242|consen  371 ALMVPILKRGLAERSTSIKRKTAIIIDNMCK---------------LVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAV  434 (569)
T ss_pred             HHHHHHHHHHHhhccchhhhhHHHHHHHHHH---------------hhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHH
Confidence            2233333    23355666777777777775               2223333333332 35666666666668999999


Q ss_pred             HHHHHHHHccC
Q 041050          345 IELALCHLAQH  355 (408)
Q Consensus       345 a~~aL~~La~~  355 (408)
                      +..+|+.+-.+
T Consensus       435 aarAL~~l~e~  445 (569)
T KOG1242|consen  435 AARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHH
Confidence            99999887765

>PRK14707 hypothetical protein; Provisional

Probab=96.03  E-value=0.31  Score=56.85  Aligned_cols=227  Identities=16%  Similarity=0.112  Sum_probs=146.6

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-HhccCChhhHH
Q 041050          142 LHKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-NLAMNAEANQE  218 (408)
Q Consensus       142 v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-nLa~~~~~~~~  218 (408)
                      +..+++.++  .++.+.+..+.....-++.++..+..+ ...+|..+++-++.=++....+.|+..|+ .|+.+ +..+.
T Consensus       165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~-~~l~~  242 (2710)
T PRK14707        165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADE-SRLRN  242 (2710)
T ss_pred             HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCc-HHHHH
Confidence            455566665  466667666666666776777666555 45578888888865444445555666666 45555 55544


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH-HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIA-NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~-nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                      .+-. -++...++.|++=++..+...++.+++ .++.++..++.+--.+.-..|-.+-+-++..+...|+..|+.=..  
T Consensus       243 ~~~~-q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~--  319 (2710)
T PRK14707        243 ELKP-QELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA--  319 (2710)
T ss_pred             hCCh-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh--
Confidence            4444 456666777777777777777777776 566777777777655555656566677888888888877766443  


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH-HHHccCchhHHHHHhCCcHHHHHHHHh
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL-CHLAQHEVNAREMISGGALWELVRISR  376 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL-~~La~~~~~~~~l~~~g~i~~L~~ll~  376 (408)
                                     .+++.+..+--.++-..|-.+.+=++..+.+.|+.+| ..++.+++....+--.|.-..|-.+.+
T Consensus       320 ---------------~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsK  384 (2710)
T PRK14707        320 ---------------DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSK  384 (2710)
T ss_pred             ---------------ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhc
Confidence                           4555554444444444444444444444544444444 558888888888877788888888888


Q ss_pred             cCCHHHHHHHHH
Q 041050          377 DCSREDIRSLAH  388 (408)
Q Consensus       377 ~~~~~~~~~~A~  388 (408)
                      .++....+.+|.
T Consensus       385 Wp~~~~c~~aa~  396 (2710)
T PRK14707        385 WPDTPVCAAAAS  396 (2710)
T ss_pred             CCCchHHHHHHH
Confidence            887777665555

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.02  E-value=0.069  Score=42.53  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH--hcCcHHHHHHHh
Q 041050          157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM--AQGGISLLSTTA  233 (408)
Q Consensus       157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~--~~g~i~~Lv~lL  233 (408)
                      |..++..|...+. -+......++. .+|+++..+. +++..||..|+.+|+|++.. -  +..+.  -...++.|..++
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~-Il~pVL~~~~-D~d~rVRy~AcEaL~ni~k~-~--~~~~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDE-ILPPVLKCFD-DQDSRVRYYACEALYNISKV-A--RGEILPYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHH-HHHHHHHHcC-CCcHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHH
Confidence            4556666666654 22223333333 5899999998 57899999999999999876 2  33332  234566777776


Q ss_pred             hcCCCHHHHHHHHHHHHHHh
Q 041050          234 ADAEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       234 ~~~~~~~v~~~a~~aL~nL~  253 (408)
                       .++++.|+ .++..|-++-
T Consensus        78 -~D~d~~Vr-~~a~~Ld~ll   95 (97)
T PF12755_consen   78 -ADPDENVR-SAAELLDRLL   95 (97)
T ss_pred             -cCCchhHH-HHHHHHHHHh
Confidence             56777777 5557776653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.21  Score=53.05  Aligned_cols=94  Identities=17%  Similarity=0.260  Sum_probs=64.2

Q ss_pred             CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH---------------HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh
Q 041050          194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGI---------------SLLSTTAADAEDPQTLRMVAGAIANLCGNDKL  258 (408)
Q Consensus       194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i---------------~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~  258 (408)
                      ++..+|..|+.+|+..-.+.+.|.+-+ ..+++               ..++.+| +++|+.+++.|...+.-|......
T Consensus       306 ~~~~LrvlainiLgkFL~n~d~NirYv-aLn~L~r~V~~d~~avqrHr~tIleCL-~DpD~SIkrralELs~~lvn~~Nv  383 (866)
T KOG1062|consen  306 SNSGLRVLAINILGKFLLNRDNNIRYV-ALNMLLRVVQQDPTAVQRHRSTILECL-KDPDVSIKRRALELSYALVNESNV  383 (866)
T ss_pred             CCchHHHHHHHHHHHHhcCCccceeee-ehhhHHhhhcCCcHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHhccccH
Confidence            366788889999987777634443222 11111               1345676 568888999999888887644444


Q ss_pred             HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       259 ~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      +..+.+      |+..|.+.+++.+..++..+..++.
T Consensus       384 ~~mv~e------Ll~fL~~~d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  384 RVMVKE------LLEFLESSDEDFKADIASKIAELAE  414 (866)
T ss_pred             HHHHHH------HHHHHHhccHHHHHHHHHHHHHHHH
Confidence            433333      8888877799999999999988886

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.95  E-value=0.42  Score=50.28  Aligned_cols=183  Identities=15%  Similarity=0.160  Sum_probs=118.1

Q ss_pred             HHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHH
Q 041050          166 NLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRM  244 (408)
Q Consensus       166 nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~  244 (408)
                      +|+. -+.--+.+..  .+..|-++|. +....+|..|+..++.|+.. ....+.+-..  ...++..|+...|..+++.
T Consensus       315 ~l~~h~D~e~~ll~~--~~~~Lg~fls-~rE~NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrr  388 (938)
T KOG1077|consen  315 SLAIHLDSEPELLSR--AVNQLGQFLS-HRETNIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRR  388 (938)
T ss_pred             HHHHHcCCcHHHHHH--HHHHHHHHhh-cccccchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHH
Confidence            4444 3333334433  3667777777 45667899899999999888 6666666665  6777888865788899999


Q ss_pred             HHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhh---hhccCChhhHHHH
Q 041050          245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR---CTATGVKSGRSLL  321 (408)
Q Consensus       245 a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i---~~~~~~~~~~~~i  321 (408)
                      ++-.|.-+|.- +|...|+++     |++.|.+-|+.+++...-=++-|+..-.....+.++.+   -+.+|      .+
T Consensus       389 avDLLY~mcD~-~Nak~IV~e-----lLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqLiriag------d~  456 (938)
T KOG1077|consen  389 AVDLLYAMCDV-SNAKQIVAE-----LLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAG------DY  456 (938)
T ss_pred             HHHHHHHHhch-hhHHHHHHH-----HHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhc------cc
Confidence            99999999843 444445443     77888888999999888777777752111111111110   01111      12


Q ss_pred             HhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCc
Q 041050          322 IEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGA  367 (408)
Q Consensus       322 ~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~  367 (408)
                      .++++--.+++..- .+++++..|+..+...-+.+.+...|++.||
T Consensus       457 vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq~~a~hE~mVKvgg  501 (938)
T KOG1077|consen  457 VSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQKPACHENMVKVGG  501 (938)
T ss_pred             ccHHHHHHhheeEe-cchhhhHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence            23344445555554 3567888888888877777777777776554

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.94  E-value=0.078  Score=56.21  Aligned_cols=135  Identities=20%  Similarity=0.219  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHh-cCcHHHHHHHhh
Q 041050          158 IHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMA-QGGISLLSTTAA  234 (408)
Q Consensus       158 ~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~-~g~i~~Lv~lL~  234 (408)
                      ..++.++.||++ ++..+.+|...-+++.+-.++- .+++..++.++..+.||... +..... |++ ..+.+.....+ 
T Consensus       560 ~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~-ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~-  636 (748)
T KOG4151|consen  560 FEALEALTNLASISESDRQKILKEKALGKIEELMT-EENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNL-  636 (748)
T ss_pred             HHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhh-cccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHH-
Confidence            458889999998 7888888999888888777765 46889999999999999999 655554 555 56777655555 


Q ss_pred             cCCCHHHHHHHHHHHHHHh-CCchhHH-HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          235 DAEDPQTLRMVAGAIANLC-GNDKLQM-KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       235 ~~~~~~v~~~a~~aL~nL~-~~~~~~~-~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ...++......+++++-+. .+..... ...-..+...++.++.+++..++..-...+.|+..
T Consensus       637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~  699 (748)
T KOG4151|consen  637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE  699 (748)
T ss_pred             HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH
Confidence            4467778888888888676 3333333 23335688889999999999999999888888663

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=95.87  E-value=0.62  Score=47.99  Aligned_cols=222  Identities=11%  Similarity=0.035  Sum_probs=137.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHH----HcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLML----LRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~l----L~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .+..|+++.+.....|+.+++.++.-+-      -.+..|-|+..    ....++..++.++++++++.|.. ..-...+
T Consensus        99 al~aL~s~epr~~~~Aaql~aaIA~~El------p~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces-~~Pe~li  171 (858)
T COG5215          99 ALRALKSPEPRFCTMAAQLLAAIARMEL------PNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCES-EAPEDLI  171 (858)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHHHhhC------ccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhc-cCHHHHH
Confidence            3577788999999999999999876210      12234444443    34456788999999999999887 4445555


Q ss_pred             HhcCcHH-HHH-HHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcc----cHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          221 MAQGGIS-LLS-TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEG----GIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       221 ~~~g~i~-~Lv-~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g----~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      -..+.+- .++ ..++..++..++-.++.+|.+=+.  ..+..+..++    .++........+|.+++..|.+|+..+.
T Consensus       172 ~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~--fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim  249 (858)
T COG5215         172 QMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM--FVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIM  249 (858)
T ss_pred             HHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH--HHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHH
Confidence            5554432 333 344455666788888999987221  1122222222    2334556667899999999999998887


Q ss_pred             ccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHH-HHH----------
Q 041050          295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR-EMI----------  363 (408)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~-~l~----------  363 (408)
                      .                 -+=+...-+.+.-......+.+++.++++...++..-..+|..+.... .+.          
T Consensus       250 ~-----------------LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~  312 (858)
T COG5215         250 M-----------------LYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNH  312 (858)
T ss_pred             H-----------------HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhc
Confidence            4                 122222233444445566778899999999888876666665432211 111          


Q ss_pred             ------hCCcHHHHHHHHhcCC----HH--HHHHHHHHHHh
Q 041050          364 ------SGGALWELVRISRDCS----RE--DIRSLAHRTLS  392 (408)
Q Consensus       364 ------~~g~i~~L~~ll~~~~----~~--~~~~~A~~~L~  392 (408)
                            -...+|.|.+||....    .+  +...+|..+|-
T Consensus       313 ~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLq  353 (858)
T COG5215         313 GFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQ  353 (858)
T ss_pred             chHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHH
Confidence                  1337889999987522    12  26667765553

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.87  E-value=0.066  Score=56.52  Aligned_cols=205  Identities=17%  Similarity=0.165  Sum_probs=128.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..++.=..++++.+|.-|++.++-+..     .++.+. ...+|...++ +.++-+|+.|+-.++++-.   ...+...
T Consensus        88 vnt~~kD~~d~np~iR~lAlrtm~~l~v-----~~i~ey-~~~Pl~~~l~-d~~~yvRktaa~~vakl~~---~~~~~~~  157 (734)
T KOG1061|consen   88 VNTFLKDCEDPNPLIRALALRTMGCLRV-----DKITEY-LCDPLLKCLK-DDDPYVRKTAAVCVAKLFD---IDPDLVE  157 (734)
T ss_pred             hhhhhccCCCCCHHHHHHHhhceeeEee-----hHHHHH-HHHHHHHhcc-CCChhHHHHHHHHHHHhhc---CChhhcc
Confidence            5555555567889999988888876644     222222 4678899998 4688899888777777744   4667788


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      ..|-++.|-.++. +++|.|..+|+.++..+. .++..-......-.+..++..+..-+..-+..+..++.+-...+++.
T Consensus       158 ~~gl~~~L~~ll~-D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~e  236 (734)
T KOG1061|consen  158 DSGLVDALKDLLS-DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSRE  236 (734)
T ss_pred             ccchhHHHHHHhc-CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchh
Confidence            8899999999984 788999999999999998 33321111111122233444443333444444555555544311111


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      .                      ...+..+.+.+.+.+..+...+..++.++...........-....++|+.++.+.+
T Consensus       237 a----------------------~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  237 A----------------------EDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES  293 (734)
T ss_pred             H----------------------HHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc
Confidence            1                      12455677777777777777777777777766444444444445566666666544

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.86  E-value=0.37  Score=51.05  Aligned_cols=227  Identities=13%  Similarity=0.083  Sum_probs=130.2

Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHc-CCCCHHHHHHHHHHHHHhccC------ChhhHHHHHhcCc
Q 041050          154 ANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLR-SFEDETIRRVAAGAIANLAMN------AEANQELIMAQGG  225 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~-~~~~~~v~~~A~~aL~nLa~~------~~~~~~~i~~~g~  225 (408)
                      ..+++.++.+|+-++.+-+...-.-..+ .+..+++=.. ...+..+|-.|..+|+|--..      ++..|..|++   
T Consensus       144 ~~~k~~slealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMq---  220 (859)
T KOG1241|consen  144 SMVKESSLEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQ---  220 (859)
T ss_pred             hHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeee---
Confidence            3589999999999998322222221222 3555555443 335678999999999875321      1222222221   


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV  304 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~  304 (408)
                        ..++. ..++|..++..|..+|..|. .+-+.-...+....+..-+.-+++++++|.-++..-=++++..+-+...+.
T Consensus       221 --vvcEa-tq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~  297 (859)
T KOG1241|consen  221 --VVCEA-TQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEY  297 (859)
T ss_pred             --eeeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              12233 36788889988888888886 333333444455566666677778888888877766666654222211111


Q ss_pred             Hh---------------------------h--------------------hhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050          305 RF---------------------------I--------------------RCTATGVKSGRSLLIEDGALPWIVQNANNE  337 (408)
Q Consensus       305 ~~---------------------------~--------------------i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~  337 (408)
                      .+                           .                    +|-..-...+.+.|+. .++|.+-+.++++
T Consensus       298 ~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~p  376 (859)
T KOG1241|consen  298 GEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNP  376 (859)
T ss_pred             HHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCc
Confidence            00                           0                    1110001111122222 3445555567778


Q ss_pred             CHHHHHHHHHHHHHHccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHH
Q 041050          338 AAPIRRHIELALCHLAQHEVNA-REMISGGALWELVRISRDCSREDIRSLA  387 (408)
Q Consensus       338 ~~~v~~~a~~aL~~La~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A  387 (408)
                      +..-|..|+.+++.+-.+++.. ..-+-.++++.++++..+++-......|
T Consensus       377 dwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaA  427 (859)
T KOG1241|consen  377 DWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAA  427 (859)
T ss_pred             chhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHH
Confidence            8888888999998888774432 2233567899999988866554443333

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=95.84  E-value=1.6  Score=42.86  Aligned_cols=205  Identities=14%  Similarity=0.130  Sum_probs=139.8

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CChhhHHHHHhcC--cHHHHHHHhhcC----CC--------HHHHHHHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAM-NAEANQELIMAQG--GISLLSTTAADA----ED--------PQTLRMVAG  247 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~g--~i~~Lv~lL~~~----~~--------~~v~~~a~~  247 (408)
                      ++.+..-|++ ....+...++..|.++.. ++......+...=  ..+.+..++...    .+        +++|...+.
T Consensus        58 ~k~lyr~L~~-~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSS-SKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCc-CcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            7778888885 456778889999999988 6556666655432  223444554211    11        278888888


Q ss_pred             HHHHHh--CCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc
Q 041050          248 AIANLC--GNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED  324 (408)
Q Consensus       248 aL~nL~--~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~  324 (408)
                      .+..+.  +++..+..+.+ .+.+..+.+-+..+++++...+..++..-...+..             =....+..+...
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~-------------v~r~~K~~~fn~  203 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSS-------------VSRSTKCKLFNE  203 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCC-------------CChhhhhhhcCH
Confidence            887776  67777777775 45677788888888899999888888854432221             124455666777


Q ss_pred             CcHHHHHHhccCCCH----HHHHHHHHHHHHHccCchhHHHHH------------------------hCCcHHHHHHHHh
Q 041050          325 GALPWIVQNANNEAA----PIRRHIELALCHLAQHEVNAREMI------------------------SGGALWELVRISR  376 (408)
Q Consensus       325 g~l~~Lv~lL~~~~~----~v~~~a~~aL~~La~~~~~~~~l~------------------------~~g~i~~L~~ll~  376 (408)
                      .++..|..+...+++    .++..+-..|..+|+++.+--..-                        ..+.+-.++..++
T Consensus       204 ~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~Gv~f~d~~~~~~~~~~~~~~~~~~~~~~~~Nk~L~~ll~~lk  283 (330)
T PF11707_consen  204 WTLSQLASLYSRDGEDEKSSVADLVHEFLLALCTDPKHGVCFPDNGWYPRESDSGVPVTINNKSFKINNKLLLNLLKKLK  283 (330)
T ss_pred             HHHHHHHHHhcccCCcccchHHHHHHHHHHHHhcCCCcccccCCCCcCcCcccccccccccCCCCCcccHHHHHHHHHCC
Confidence            889999998877766    889999999999997754321111                        1234445555555


Q ss_pred             cCCHHHHHHHHHHHHhccHhhHHHH
Q 041050          377 DCSREDIRSLAHRTLSSSLTFRAEM  401 (408)
Q Consensus       377 ~~~~~~~~~~A~~~L~~~~~~~~~~  401 (408)
                      ..++...+.++.+++...|++.+..
T Consensus       284 p~e~~~q~~Lvl~Il~~~PeLva~Y  308 (330)
T PF11707_consen  284 PWEDDRQQELVLKILKACPELVAPY  308 (330)
T ss_pred             CCccHHHHHHHHHHHHHChHHHHHH
Confidence            4455558888999999999986553

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.83  E-value=0.14  Score=46.16  Aligned_cols=119  Identities=15%  Similarity=0.083  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHhc----------------ccHHHHHHhhcC------CCHHHHHHHHHHHHHhhccc
Q 041050          240 QTLRMVAGAIANLCGNDKLQMKLRSE----------------GGIRALLGMVRC------GHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       240 ~v~~~a~~aL~nL~~~~~~~~~i~~~----------------g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~~  297 (408)
                      .....++..|+||+..+.....+.+.                ..+..|+..+..      +..+-....+..++|++   
T Consensus        10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS---   86 (192)
T PF04063_consen   10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS---   86 (192)
T ss_pred             chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc---
Confidence            45567888899999777776655432                245556666533      23445667889999998   


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhc--Cc--HHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHh---CCcHHH
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIED--GA--LPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMIS---GGALWE  370 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~--g~--l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~---~g~i~~  370 (408)
                                     ..+.+|..+.+.  +.  +..|+.+..+.+..-|.-++.+|.|+|-+.+....+..   .+.++.
T Consensus        87 ---------------~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~  151 (192)
T PF04063_consen   87 ---------------QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPY  151 (192)
T ss_pred             ---------------CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHH
Confidence                           589999999853  34  77888888888666667799999999999888888875   455665


Q ss_pred             HHHHHh
Q 041050          371 LVRISR  376 (408)
Q Consensus       371 L~~ll~  376 (408)
                      |.--+.
T Consensus       152 LLlPLa  157 (192)
T PF04063_consen  152 LLLPLA  157 (192)
T ss_pred             HHhhcc
Confidence            555444

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.78  E-value=0.97  Score=44.35  Aligned_cols=194  Identities=14%  Similarity=0.080  Sum_probs=138.0

Q ss_pred             HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH-----HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 041050          175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ-----ELIMAQGGISLLSTTAADAEDPQTLRMVAGAI  249 (408)
Q Consensus       175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~-----~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL  249 (408)
                      ..+...+.+..|+..|.. -+-+.++.++.+..++-......+     +-+. ...-..|..++...++|++--.+...|
T Consensus        70 ~Ei~~~dll~~Li~~L~~-L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~-~~~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPK-LDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLE-RHRPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGG-S-HHHHHHHHHHHHHHHT--BTTB--HHHHHHH-T--THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhh-CCCcccccHHHHHHHHHhhccCCCCCchHHHHH-hCCHHHHHHHHHHhcCccccchHHHHH
Confidence            356667778888888874 577899999999888877643332     2232 222344445555556677776777777


Q ss_pred             HHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC---c
Q 041050          250 ANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG---A  326 (408)
Q Consensus       250 ~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g---~  326 (408)
                      ...+..+.....+.....+..+......++.++...|..++..+-.                 .++.....+...+   .
T Consensus       148 Rec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt-----------------~hk~~~a~fl~~n~d~f  210 (335)
T PF08569_consen  148 RECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLT-----------------RHKKLVAEFLSNNYDRF  210 (335)
T ss_dssp             HHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHH-----------------SSHHHHHHHHHHTHHHH
T ss_pred             HHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHh-----------------ccHHHHHHHHHHHHHHH
Confidence            7777888888888888888889999999999999999999988664                 5666666666543   4


Q ss_pred             HHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          327 LPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       327 l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                      ......++.+++.-+++.+...|+.+-.+..+...|.    +..-+..++.++++. ...++-.|-
T Consensus       211 f~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAF  275 (335)
T PF08569_consen  211 FQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAF  275 (335)
T ss_dssp             HHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHH
T ss_pred             HHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHH
Confidence            5678889999999999999999999999988876655    444566777888854 444555554

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.78  E-value=0.061  Score=46.84  Aligned_cols=146  Identities=21%  Similarity=0.282  Sum_probs=94.9

Q ss_pred             HHHHHHHHcC-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHH
Q 041050          183 LSSLLMLLRS-FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQM  260 (408)
Q Consensus       183 i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~  260 (408)
                      +..++.-|.. ..++.+|..|.-++..+-   +..++.+.+. .-+.+-..+ ...+.+-...+..++..+- +.++.-.
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~-~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLL-DEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHH-CCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHH-ccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            4455555553 356778888888887772   4444443321 122233333 2222335556777787776 6666655


Q ss_pred             HH-HhcccHHHHHHhhc--CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc-C
Q 041050          261 KL-RSEGGIRALLGMVR--CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN-N  336 (408)
Q Consensus       261 ~i-~~~g~l~~L~~lL~--~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~  336 (408)
                      .+ ...|.++.++.++.  .++..++..++.+|..=|                  .+..+|..+.+ .+++||.+..+ +
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc------------------~d~~~r~~I~~-~~~~~L~~~~~~~  140 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC------------------IDKSCRTFISK-NYVSWLKELYKNS  140 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT------------------TSHHHHHCCHH-HCHHHHHHHTTTC
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH------------------ccHHHHHHHHH-HHHHHHHHHHccc
Confidence            55 47788899999997  788889988888888766                  45666555555 68899999995 4


Q ss_pred             CCHH-HHHHHHHHHHHH
Q 041050          337 EAAP-IRRHIELALCHL  352 (408)
Q Consensus       337 ~~~~-v~~~a~~aL~~L  352 (408)
                      +++. ++..|+.+|+.+
T Consensus       141 ~~~~~ir~~A~v~L~Kl  157 (157)
T PF11701_consen  141 KDDSEIRVLAAVGLCKL  157 (157)
T ss_dssp             C-HH-CHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHhcC
Confidence            5565 788888887753

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=95.63  E-value=0.57  Score=41.55  Aligned_cols=92  Identities=17%  Similarity=0.191  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHh
Q 041050          195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGM  274 (408)
Q Consensus       195 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~l  274 (408)
                      ++.+|..++-+++-|+...|..-+..     +|.+...| .+++|.+++.|+.+|.+|...+..+-   +...+..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve~~-----~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~---k~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVEPY-----LPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKV---KGQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHHhH-----HHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceee---hhhhhHHHHHH
Confidence            46889999999999988756444443     67788888 67899999999999999984432211   11123557778


Q ss_pred             hcCCCHHHHHHHHHHHHHhhc
Q 041050          275 VRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       275 L~~~~~~v~~~a~~aL~nL~~  295 (408)
                      +.+++++|+..|..++..+..
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~   92 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLK   92 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHH
Confidence            889999999999999999985

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.52  E-value=2  Score=42.24  Aligned_cols=203  Identities=10%  Similarity=0.086  Sum_probs=145.0

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cchh-----HHHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHH
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEAN-----QEKIVEAGGLSSLLML-LRSFEDETIRRVAAGAI  206 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~-----~~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL  206 (408)
                      .++...+-+..|+..|..-+-+.|..++.+..++.. ....     ...+...  -|.++.. +...+++++.-.+...|
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~--~peil~~L~~gy~~~dial~~g~ml  147 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH--RPEILDILLRGYENPDIALNCGDML  147 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT----THHHHHHHHGGGSTTTHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC--CHHHHHHHHHHhcCccccchHHHHH
Confidence            356666778899999999999999999999999876 3222     3333332  1333332 33223566677778888


Q ss_pred             HHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc---cHHHHHHhhcCCCHHH
Q 041050          207 ANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG---GIRALLGMVRCGHPDV  282 (408)
Q Consensus       207 ~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~v  282 (408)
                      ...+.+ +.....+.+...+..+.... ..+.-++..-|..++.-+- .++.........+   .+.....++.+++--+
T Consensus       148 Rec~k~-e~l~~~iL~~~~f~~ff~~~-~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvt  225 (335)
T PF08569_consen  148 RECIKH-ESLAKIILYSECFWKFFKYV-QLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVT  225 (335)
T ss_dssp             HHHTTS-HHHHHHHHTSGGGGGHHHHT-TSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHH
T ss_pred             HHHHhh-HHHHHHHhCcHHHHHHHHHh-cCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEe
Confidence            888888 98888999988888899886 5677889888988888865 7777766666544   4566777889999999


Q ss_pred             HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050          283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN  358 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~  358 (408)
                      ++++...|+.|-.                  ++.+-..|.    +..-+..++.+|++....+|.+|..++--+..++..
T Consensus       226 krqslkLL~elll------------------dr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  226 KRQSLKLLGELLL------------------DRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             HHHHHHHHHHHHH------------------SGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             ehhhHHHHHHHHH------------------chhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC
Confidence            9999999999985                  333333332    233567788899999999999999999998887543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=95.49  E-value=0.13  Score=49.17  Aligned_cols=152  Identities=11%  Similarity=0.189  Sum_probs=101.7

Q ss_pred             HHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh--hH
Q 041050          143 HKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA--NQ  217 (408)
Q Consensus       143 ~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~--~~  217 (408)
                      ..++..++  -++.++|.+++-.++-+++++...+.|-+.. -+..|+.+.+......|.+.+++++.|++..+|.  ..
T Consensus       194 ~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~  273 (432)
T COG5231         194 RRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIF  273 (432)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence            45566665  2567899999999999999888874443322 3777788877545577888899999999873211  11


Q ss_pred             HHHHhcC-------------------------------------------------------------------------
Q 041050          218 ELIMAQG-------------------------------------------------------------------------  224 (408)
Q Consensus       218 ~~i~~~g-------------------------------------------------------------------------  224 (408)
                      ......+                                                                         
T Consensus       274 ~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kd  353 (432)
T COG5231         274 SPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKD  353 (432)
T ss_pred             hhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhh
Confidence            1111111                                                                         


Q ss_pred             ---cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          225 ---GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       225 ---~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                         .+..|..++....+-.....|+.=|..+. ..|+.+..+...|+=..++.++.++|++|+.+|..|+..+.
T Consensus       354 ny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         354 NYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence               11222333321111123334555566665 77888999999999999999999999999999999887664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.48  E-value=1.1  Score=48.28  Aligned_cols=168  Identities=14%  Similarity=0.077  Sum_probs=115.4

Q ss_pred             HcCCCCHHHHHHHH-HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH
Q 041050          190 LRSFEDETIRRVAA-GAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI  268 (408)
Q Consensus       190 L~~~~~~~v~~~A~-~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l  268 (408)
                      +.+ .++..+..|+ .+|++++.. ++-...      .+-+++... +.+.++.+..---+-+.+........+    ++
T Consensus        28 l~s-~n~~~kidAmK~iIa~M~~G-~dmssL------f~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL----av   94 (757)
T COG5096          28 LES-SNDYKKIDAMKKIIAQMSLG-EDMSSL------FPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL----AV   94 (757)
T ss_pred             ccc-cChHHHHHHHHHHHHHHhcC-CChHHH------HHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH----HH
Confidence            543 3444455444 566788777 442222      234455554 678899988888888888333322222    34


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050          269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA  348 (408)
Q Consensus       269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a  348 (408)
                      ..+.+=+.++++.+|-.|.++++.+-.                   ++.    . ..+++++.+++.++++-||+.|+.+
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~~-------------------~el----~-~~~~~~ik~~l~d~~ayVRk~Aala  150 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLRV-------------------KEL----L-GNIIDPIKKLLTDPHAYVRKTAALA  150 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcCh-------------------HHH----H-HHHHHHHHHHccCCcHHHHHHHHHH
Confidence            556677789999999999999998843                   221    1 2467899999999999999999999


Q ss_pred             HHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccHh
Q 041050          349 LCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLT  396 (408)
Q Consensus       349 L~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~~  396 (408)
                      +.++=.-+.  ....+.|.+..+..++.+.++..++++-...-..+|.
T Consensus       151 v~kly~ld~--~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         151 VAKLYRLDK--DLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHhcCH--hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            999865432  3455888999999999988887777665555555554

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=95.44  E-value=0.85  Score=43.12  Aligned_cols=175  Identities=17%  Similarity=0.138  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHhcCc--HHHHHHHhhc---CCCHHHHHHHHHHHHHHhCCchhHHHHHhccc--HHH
Q 041050          198 IRRVAAGAIANLAMNAEANQELIMAQGG--ISLLSTTAAD---AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGG--IRA  270 (408)
Q Consensus       198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~--i~~Lv~lL~~---~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~--l~~  270 (408)
                      .+--++..++-+..+ +..-..+...++  ...+..++..   ...+..+..++++++|+-.++..+..+.+...  +-.
T Consensus        79 ~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~  157 (268)
T PF08324_consen   79 SRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILE  157 (268)
T ss_dssp             C-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHH
T ss_pred             cchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHH
Confidence            344466666666666 666555554432  3444444332   24678888999999999999999988876543  333


Q ss_pred             HHHhhcCC----CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cC-CCHHHHHH
Q 041050          271 LLGMVRCG----HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NN-EAAPIRRH  344 (408)
Q Consensus       271 L~~lL~~~----~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~-~~~~v~~~  344 (408)
                      .+..+...    ++.++..++..+.|++.--.+.           ..+.+.+.     .++..+++.+ .. .++++...
T Consensus       158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~-----------~~~~~~~~-----~ll~~i~~~~~~~~~d~Ea~~R  221 (268)
T PF08324_consen  158 LLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKN-----------RSDEEWQS-----ELLSSIIEVLSREESDEEALYR  221 (268)
T ss_dssp             HCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHC-----------TS-CCHHH-----HHHHHHHHHCHCCHTSHHHHHH
T ss_pred             HHHHHhhccccccHHHHHHHHHHHHHHHHHHHhc-----------CCChHHHH-----HHHHHHHHHhccccCCHHHHHH
Confidence            33333332    6788888999999998510000           00111111     2345566633 22 58999999


Q ss_pred             HHHHHHHHccCchhHHHHHh-CCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050          345 IELALCHLAQHEVNAREMIS-GGALWELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       345 a~~aL~~La~~~~~~~~l~~-~g~i~~L~~ll~~~~~~~~~~~A~~  389 (408)
                      ++.|++++...+.......+ .|+...+........++.++..+..
T Consensus       222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~e  267 (268)
T PF08324_consen  222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAE  267 (268)
T ss_dssp             HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhcc
Confidence            99999999988777777775 5666666666655555556666543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PRK14707 hypothetical protein; Provisional

Probab=95.43  E-value=0.66  Score=54.37  Aligned_cols=230  Identities=19%  Similarity=0.136  Sum_probs=154.4

Q ss_pred             chHHHHHHhcCHHHHHHhhc-CCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH-
Q 041050          131 APITKLFEQVGLHKILSLLE-SEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA-  207 (408)
Q Consensus       131 ~~~~~l~~~~~v~~Ll~lL~-s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~-  207 (408)
                      ...+.-+...+|...++.|+ =++...+..|+.+|+ .++.++..+..+ ..-.+.-.++-|+.-.+..+...|+..|+ 
T Consensus       238 ~~l~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al-~~q~vanalNalSKwpd~~vc~~Aa~~la~  316 (2710)
T PRK14707        238 SRLRNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKAL-DPINVTQALNALSKWADLPVCAEAAIALAE  316 (2710)
T ss_pred             HHHHHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhc-CHHHHHHHHhhhhcCCCchHHHHHHHHHHH
Confidence            45556666667888887776 466667777777775 555555555444 33346666676765667777777777665 


Q ss_pred             HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH-HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA-NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~-nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                      .|..+ +..++.+-.. ++.-.++-|++=+|..+.+.++.+|+ .++.+++.++.+--.|.-..|-.+-+=++..+.+.+
T Consensus       317 rl~~d-~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~a  394 (2710)
T PRK14707        317 RLADD-PELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAA  394 (2710)
T ss_pred             HHhcc-HhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHH
Confidence            66666 7777665444 45556677777677667666666665 677888888877655555555555577888888888


Q ss_pred             HHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH-HccCchhHHHHHhC
Q 041050          287 ARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH-LAQHEVNAREMISG  365 (408)
Q Consensus       287 ~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~-La~~~~~~~~l~~~  365 (408)
                      +.+|+.=..                 ++++.+..|-..|+-..|-.+.+=++..+...++.+|.. ++.+.+..+.+--.
T Consensus       395 a~~LA~~l~-----------------~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~  457 (2710)
T PRK14707        395 ASALAEHVV-----------------DDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPI  457 (2710)
T ss_pred             HHHHHHHhc-----------------cChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChH
Confidence            888777554                 788888888888887777777776777777777777755 66666666555544


Q ss_pred             CcHHHHHHHHhcCCH
Q 041050          366 GALWELVRISRDCSR  380 (408)
Q Consensus       366 g~i~~L~~ll~~~~~  380 (408)
                      ++...|-.+.+.++.
T Consensus       458 ~va~~LnalSKWPd~  472 (2710)
T PRK14707        458 NVTQALDALSKWPDT  472 (2710)
T ss_pred             HHHHHHHHhhcCCCC
Confidence            555555555555443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=95.40  E-value=0.39  Score=49.71  Aligned_cols=164  Identities=13%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      ++++-.+....+..-.......+|.+.+.+...++++|..+..+|.+++.--+|-+ |-.  -+|.|+..+.+ +.. -.
T Consensus       275 lellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~--~ip~Lld~l~d-p~~-~~  349 (569)
T KOG1242|consen  275 LELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQK--IIPTLLDALAD-PSC-YT  349 (569)
T ss_pred             HHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHH--HHHHHHHHhcC-ccc-ch
Confidence            45555554555555566667779999999999999999999999999987333333 211  47888888883 221 22


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHhC---CchhHHHHHhcccHHHHHH
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLCG---NDKLQMKLRSEGGIRALLG  273 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~~---~~~~~~~i~~~g~l~~L~~  273 (408)
                      ..+...|+.=+.-      ..++.-.+..++.+|.   ...+..+.+.++-++.|+|.   |+..-.-+.. -.+|-|-.
T Consensus       350 ~e~~~~L~~ttFV------~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~  422 (569)
T KOG1242|consen  350 PECLDSLGATTFV------AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKE  422 (569)
T ss_pred             HHHHHhhcceeee------eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHH
Confidence            3344444322221      0111122333444443   22445688999999999993   3333333221 23444444


Q ss_pred             hhcCCCHHHHHHHHHHHHHhhc
Q 041050          274 MVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       274 lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      .+....|++|.-++++|+.+-.
T Consensus       423 ~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  423 NLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HhcCCChhHHHHHHHHHHHHHH
Confidence            5556689999999999988864

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.35  E-value=0.33  Score=48.88  Aligned_cols=166  Identities=17%  Similarity=0.134  Sum_probs=105.7

Q ss_pred             hhhcCCCCchHHHHHHhcCHHHHHHhhcC-------CCHHHHHHHHHHHHHHcCCchhH--HHHHHhCCHHHHHHHHcCC
Q 041050          123 RDSGNGQKAPITKLFEQVGLHKILSLLES-------EDANVRIHAVKVVANLAAEEANQ--EKIVEAGGLSSLLMLLRSF  193 (408)
Q Consensus       123 l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-------~~~~v~~~A~~aL~nLa~~~~~~--~~i~~~g~i~~L~~lL~~~  193 (408)
                      .++-+....+.+.+++..|.+.+-.+|.+       ++.-.+..++.+|+-.+..|+..  ..++.  .||.|+..+...
T Consensus        39 vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~v~--~IP~llev~~~~  116 (698)
T KOG2611|consen   39 VKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEMVS--RIPLLLEVMSKG  116 (698)
T ss_pred             hcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHHHH--hhhHHHHHHHhc
Confidence            34445556677889999999888888853       33445677888888888877654  34544  499999999765


Q ss_pred             CCHH------HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-h-CCc---hhHHHH
Q 041050          194 EDET------IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL-C-GND---KLQMKL  262 (408)
Q Consensus       194 ~~~~------v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~-~~~---~~~~~i  262 (408)
                      .|++      +...+-..|+.++.. +.....++..||++.+..+- ...+-......+-.+.-+ . +-+   +.-..+
T Consensus       117 ~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y-~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~f  194 (698)
T KOG2611|consen  117 IDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMY-ELPDGSHDMALALKVLLLLVSKLDCWSETIERF  194 (698)
T ss_pred             CCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHH-hCCCCchhHHHHHHHHHHHHHhcccCcCCHHHH
Confidence            5544      777788999999999 99999999999999998663 333322222111111111 1 111   111111


Q ss_pred             HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          263 RSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       263 ~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      ..  .+..+..=+...+...+.+.|..|..+-
T Consensus       195 la--li~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  195 LA--LIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             HH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            11  1333333334556667778888887543

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.24  E-value=1.5  Score=40.71  Aligned_cols=143  Identities=13%  Similarity=0.166  Sum_probs=101.4

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHH-Hhhc-----CCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHH
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKIL-SLLE-----SEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLL  190 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll-~lL~-----s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL  190 (408)
                      .+-+++-+.++.+....++... +|-.+ .+|+     .+.+.+|..++.+++.|..  +++.-..+...+.+|..+..+
T Consensus        99 aL~LlQcvASHpdTr~~FL~A~-iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrim  177 (293)
T KOG3036|consen   99 ALALLQCVASHPDTRRAFLRAH-IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIM  177 (293)
T ss_pred             HHHHHHHHhcCcchHHHHHHcc-ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHH
Confidence            3566677766666666666655 44333 4443     4678899999999999987  445666777888999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc-------C-cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHH
Q 041050          191 RSFEDETIRRVAAGAIANLAMNAEANQELIMAQ-------G-GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL  262 (408)
Q Consensus       191 ~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-------g-~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i  262 (408)
                      .. .++.-+..|..++-.+-.+ +..-.-+..+       + .+..++.-+.+.+++.+..+++++..+|+.|+..+..+
T Consensus       178 e~-GSelSKtvA~fIlqKIlld-D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL  255 (293)
T KOG3036|consen  178 ES-GSELSKTVATFILQKILLD-DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL  255 (293)
T ss_pred             hc-ccHHHHHHHHHHHHHHhhc-cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            85 4667777888888887777 5443322211       1 22233444457788999999999999999999998887


Q ss_pred             Hh
Q 041050          263 RS  264 (408)
Q Consensus       263 ~~  264 (408)
                      ..
T Consensus       256 ~~  257 (293)
T KOG3036|consen  256 RS  257 (293)
T ss_pred             Hh
Confidence            64

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.11  E-value=2.4  Score=42.44  Aligned_cols=102  Identities=16%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             HHHhCC-HHHHHHHHcCCC--CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-c--CCCHHHHHHHHHHHH
Q 041050          177 IVEAGG-LSSLLMLLRSFE--DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-D--AEDPQTLRMVAGAIA  250 (408)
Q Consensus       177 i~~~g~-i~~L~~lL~~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-~--~~~~~v~~~a~~aL~  250 (408)
                      +++.+. +..|..++....  .+.+--.|+.++..+-.+.|..-..+.+.|.++.++..+. .  .+..++....-.++.
T Consensus       101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~  180 (379)
T PF06025_consen  101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS  180 (379)
T ss_pred             ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence            444233 556666666432  4678888999999999987888888889999998888875 2  245678888899999


Q ss_pred             HHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050          251 NLCGNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      .||-|....+.+.+.+.++.+++++.++
T Consensus       181 AicLN~~Gl~~~~~~~~l~~~f~if~s~  208 (379)
T PF06025_consen  181 AICLNNRGLEKVKSSNPLDKLFEIFTSP  208 (379)
T ss_pred             HHhcCHHHHHHHHhcChHHHHHHHhCCH
Confidence            9999999999999999999999988654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.08  E-value=0.48  Score=51.40  Aligned_cols=101  Identities=14%  Similarity=0.095  Sum_probs=67.7

Q ss_pred             CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCC
Q 041050          236 AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGV  314 (408)
Q Consensus       236 ~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~  314 (408)
                      +.++.++..++.+|+.|+ .+|+        ..++.|-..++++.+..+.-+..++.....                 .+
T Consensus       943 ~~eegtR~vvAECLGkL~l~epe--------sLlpkL~~~~~S~a~~~rs~vvsavKfsis-----------------d~  997 (1233)
T KOG1824|consen  943 CAEEGTRNVVAECLGKLVLIEPE--------SLLPKLKLLLRSEASNTRSSVVSAVKFSIS-----------------DQ  997 (1233)
T ss_pred             cchhhhHHHHHHHhhhHHhCChH--------HHHHHHHHHhcCCCcchhhhhhheeeeeec-----------------CC
Confidence            345567777778888777 3332        345667777788888887777666655443                 22


Q ss_pred             hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHH
Q 041050          315 KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREM  362 (408)
Q Consensus       315 ~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l  362 (408)
                      +.-...+ ....+.....++++++.+||+.|..++...+.+ +...+++
T Consensus       998 p~~id~~-lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDl 1045 (1233)
T KOG1824|consen  998 PQPIDPL-LKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDL 1045 (1233)
T ss_pred             CCccCHH-HHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHH
Confidence            2222222 235667888899999999999999999999988 4444443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.07  E-value=0.26  Score=54.50  Aligned_cols=141  Identities=16%  Similarity=0.135  Sum_probs=103.5

Q ss_pred             HHHHHHHHcC---CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchh
Q 041050          183 LSSLLMLLRS---FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL  258 (408)
Q Consensus       183 i~~L~~lL~~---~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~  258 (408)
                      .|-++...+.   ..+|+++.+|.-+|+.+..-+...+..     -.|.|+..+..+++|.++.+++-+++.|+ .-|..
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            4555666632   257999999999999886654444333     37899999988999999999999999998 44444


Q ss_pred             HHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC
Q 041050          259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA  338 (408)
Q Consensus       259 ~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~  338 (408)
                      -+.     +-+.|...|+..++.+++.|..+|+.|..                      ...+.-.|.++.+..++.+++
T Consensus       996 ie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL----------------------ndmiKVKGql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen  996 IEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL----------------------NDMIKVKGQLSEMALCLEDPN 1048 (1251)
T ss_pred             cch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH----------------------hhhhHhcccHHHHHHHhcCCc
Confidence            333     34558889999999999999999999975                      112334577777777777777


Q ss_pred             HHHHHHHHHHHHHHccC
Q 041050          339 APIRRHIELALCHLAQH  355 (408)
Q Consensus       339 ~~v~~~a~~aL~~La~~  355 (408)
                      ..|+.-|-.....|+..
T Consensus      1049 ~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen 1049 AEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             HHHHHHHHHHHHHhhhc
Confidence            77777777555555543

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=95.06  E-value=0.098  Score=54.04  Aligned_cols=148  Identities=19%  Similarity=0.239  Sum_probs=95.6

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH---HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---c
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE---LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN---D  256 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~---~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~---~  256 (408)
                      +..++.+|+ +.++.+|..|+...+.|+.- -.++.   .+...|.  .|.+-| ..++|+++-.++.+++.+...   .
T Consensus       606 vStiL~~L~-~k~p~vR~~aadl~~sl~~v-lk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~  680 (975)
T COG5181         606 VSTILKLLR-SKPPDVRIRAADLMGSLAKV-LKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR  680 (975)
T ss_pred             HHHHHHHhc-CCCccHHHHHHHHHHHHHHH-HHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence            456677788 47889999999988888654 32221   2223332  345665 567899988888888877522   2


Q ss_pred             hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050          257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       257 ~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      ..+--+  .|.+|.|..+|++.+..+..+....+.-++..+++-.           |..+|-+.-.      .|+..|++
T Consensus       681 ~mqpPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi-----------~~rEWMRIcf------eLvd~Lks  741 (975)
T COG5181         681 SMQPPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYI-----------GVREWMRICF------ELVDSLKS  741 (975)
T ss_pred             ccCCch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccC-----------CHHHHHHHHH------HHHHHHHH
Confidence            222222  4788999999999999999988888888776433321           2222222211      35666777


Q ss_pred             CCHHHHHHHHHHHHHHcc
Q 041050          337 EAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       337 ~~~~v~~~a~~aL~~La~  354 (408)
                      .+.++|++|...++-++.
T Consensus       742 ~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         742 WNKEIRRNATETFGCISR  759 (975)
T ss_pred             hhHHHHHhhhhhhhhHHh
Confidence            777777777777666654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.06  E-value=1.3  Score=47.01  Aligned_cols=209  Identities=13%  Similarity=0.097  Sum_probs=129.0

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH---HHHH
Q 041050          146 LSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ---ELIM  221 (408)
Q Consensus       146 l~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~---~~i~  221 (408)
                      .+.-.+++.+++..|...|..|.. .-+.-..-++....+.-+..++ +++++|.-.++..=+++|...-+.-   ...+
T Consensus       223 cEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amk-s~~deValQaiEFWsticeEEiD~~~e~~e~~  301 (859)
T KOG1241|consen  223 CEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMK-SDNDEVALQAIEFWSTICEEEIDLAIEYGEAV  301 (859)
T ss_pred             eecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344457889999999999998876 4333333344434555566667 4678898889888888876521100   1111


Q ss_pred             h---------------cCcHHHHHHHhhc-CCCH--HH--HHHHHHHHHHH-h---CCchhHHHHHhcccHHHHHHhhcC
Q 041050          222 A---------------QGGISLLSTTAAD-AEDP--QT--LRMVAGAIANL-C---GNDKLQMKLRSEGGIRALLGMVRC  277 (408)
Q Consensus       222 ~---------------~g~i~~Lv~lL~~-~~~~--~v--~~~a~~aL~nL-~---~~~~~~~~i~~~g~l~~L~~lL~~  277 (408)
                      +               .+.+|.|+++|.+ .+++  +.  ...|++++.-| +   +|+     |+. -.++.+-.-+++
T Consensus       302 d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~-----Iv~-~Vl~Fiee~i~~  375 (859)
T KOG1241|consen  302 DQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD-----IVP-HVLPFIEENIQN  375 (859)
T ss_pred             hcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc-----chh-hhHHHHHHhcCC
Confidence            1               2456778888864 2221  11  22333333322 2   332     211 233444445567


Q ss_pred             CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050          278 GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV  357 (408)
Q Consensus       278 ~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~  357 (408)
                      +|-.-+..++.++..+-.                 |....+..=+-.+++|.++.++..+.--++..++|+++.++..-.
T Consensus       376 pdwr~reaavmAFGSIl~-----------------gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~  438 (859)
T KOG1241|consen  376 PDWRNREAAVMAFGSILE-----------------GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP  438 (859)
T ss_pred             cchhhhhHHHHHHHhhhc-----------------CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence            888888888899988875                 444444444556899999999998888889999999999998722


Q ss_pred             -hH-HHHHhCCcHHHHHHHHhcC
Q 041050          358 -NA-REMISGGALWELVRISRDC  378 (408)
Q Consensus       358 -~~-~~l~~~g~i~~L~~ll~~~  378 (408)
                       .+ ....-.+.+..|++-+.+.
T Consensus       439 e~~~n~~~l~~~l~~l~~gL~De  461 (859)
T KOG1241|consen  439 EAIINQELLQSKLSALLEGLNDE  461 (859)
T ss_pred             hhcccHhhhhHHHHHHHHHhhhC
Confidence             21 2222455666666666543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=95.06  E-value=0.13  Score=54.11  Aligned_cols=147  Identities=18%  Similarity=0.200  Sum_probs=99.2

Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH--HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC---chhH
Q 041050          185 SLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ--ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN---DKLQ  259 (408)
Q Consensus       185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~--~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~---~~~~  259 (408)
                      .++..|+ +.++.+|..|+..++.|+.- -..+  ..++..=|+ .|.+.| ..++|+++-.++++|..++..   ..-+
T Consensus       803 tiL~rLn-nksa~vRqqaadlis~la~V-lktc~ee~~m~~lGv-vLyEyl-geeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  803 TILWRLN-NKSAKVRQQAADLISSLAKV-LKTCGEEKLMGHLGV-VLYEYL-GEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHhc-CCChhHHHHHHHHHHHHHHH-HHhccHHHHHHHhhH-HHHHhc-CcccHHHHHHHHHHHHHHHHhccccccC
Confidence            4455666 46788999999999888765 3333  223333232 356776 668899988888888877622   1111


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA  339 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~  339 (408)
                      --+  .+.+|.|..+|++.+..|+.++...+.-++..+++-.           +..+|-+.-      =-|+++|++.+.
T Consensus       879 pPi--~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v-----------~aREWMRIc------feLlelLkahkK  939 (1172)
T KOG0213|consen  879 PPI--KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYV-----------SAREWMRIC------FELLELLKAHKK  939 (1172)
T ss_pred             CCh--hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccC-----------CHHHHHHHH------HHHHHHHHHHHH
Confidence            112  4678889999999999999999999988886333311           222222222      246778888889


Q ss_pred             HHHHHHHHHHHHHcc
Q 041050          340 PIRRHIELALCHLAQ  354 (408)
Q Consensus       340 ~v~~~a~~aL~~La~  354 (408)
                      ++|+.|...++-++.
T Consensus       940 ~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  940 EIRRAAVNTFGYIAK  954 (1172)
T ss_pred             HHHHHHHhhhhHHHH
Confidence            999999988888774

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.93  E-value=0.43  Score=42.36  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=71.4

Q ss_pred             CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChh
Q 041050          238 DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS  316 (408)
Q Consensus       238 ~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~  316 (408)
                      +|.++..++.+++.|| ..+..-+     ..++.+...|+++++.|++.|+.+|..|...                +.-.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~----------------d~ik   59 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILE----------------DMIK   59 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc----------------Ccee
Confidence            5789999999999998 4443322     4577799999999999999999999999851                1111


Q ss_pred             hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       317 ~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      .     +...+..++.++..++++|+..|..++..+...
T Consensus        60 ~-----k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   60 V-----KGQLFSRILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             e-----hhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            1     222347788888889999999999999998877

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=94.88  E-value=1.2  Score=41.80  Aligned_cols=171  Identities=16%  Similarity=0.174  Sum_probs=93.9

Q ss_pred             HHHHhcCHHHHHHhhc--CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050          135 KLFEQVGLHKILSLLE--SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       135 ~l~~~~~v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  212 (408)
                      ++-....+|.++..|.  +..+-+|..|+.+|+++..          .+.++.+-+..+ ++..+++..+..|+..+-.-
T Consensus        62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~----------~~~~~~l~k~~~-dp~~~v~ETc~lAi~rle~~  130 (289)
T KOG0567|consen   62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD----------PESLEILTKYIK-DPCKEVRETCELAIKRLEWK  130 (289)
T ss_pred             hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcc----------hhhHHHHHHHhc-CCccccchHHHHHHHHHHHh
Confidence            3444556999998887  5667889999999998763          223444444443 44556666555666555322


Q ss_pred             ChhhHH-----HH--------HhcCcHHHHHHHhhcCCCHHHHH-HHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050          213 AEANQE-----LI--------MAQGGISLLSTTAADAEDPQTLR-MVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       213 ~~~~~~-----~i--------~~~g~i~~Lv~lL~~~~~~~v~~-~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                       +....     ..        ...+-+..|-..|.+...|...+ .+...|.|+.+.          ..+.+|..-+..+
T Consensus       131 -~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E----------eaI~al~~~l~~~  199 (289)
T KOG0567|consen  131 -DIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE----------EAINALIDGLADD  199 (289)
T ss_pred             -hccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH----------HHHHHHHHhcccc
Confidence             10000     00        11112222322222333333322 222333332211          1344455555666


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC--CCHHHHHHHHHHHHHHccC
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN--EAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~--~~~~v~~~a~~aL~~La~~  355 (408)
                      ++-.+..++.+++.|-.                            .-.+|.|.+.|..  +++.+|.+|+.||+.++.+
T Consensus       200 SalfrhEvAfVfGQl~s----------------------------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e  250 (289)
T KOG0567|consen  200 SALFRHEVAFVFGQLQS----------------------------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE  250 (289)
T ss_pred             hHHHHHHHHHHHhhccc----------------------------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH
Confidence            67777788888877753                            2356777776643  4777788888888888865

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.87  E-value=0.57  Score=43.88  Aligned_cols=168  Identities=11%  Similarity=0.142  Sum_probs=115.1

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHc
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLR  191 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~  191 (408)
                      .+.+++.+.++.+....++.....--|..+|+.     +.+.+|-.++.+++.|..  +++....+...+.+|.-+..++
T Consensus        70 aLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me  149 (262)
T PF04078_consen   70 ALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIME  149 (262)
T ss_dssp             HHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHH
Confidence            356777777777777777777653344466652     347799999999999988  5667777788888999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050          192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR  263 (408)
Q Consensus       192 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~  263 (408)
                      . .+.--+..|..++..+-.+ +..-.-+.++        .++..++.-+...+++.+.+++.++-..|+.|+..+..+.
T Consensus       150 ~-GselSKtvAtfIlqKIL~d-d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~  227 (262)
T PF04078_consen  150 F-GSELSKTVATFILQKILLD-DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR  227 (262)
T ss_dssp             H-S-HHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH
T ss_pred             h-ccHHHHHHHHHHHHHHHcc-hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH
Confidence            5 4666777788888888887 6554433222        1333445555577899999999999999999999999887


Q ss_pred             hcccHHHHHHhhc--------CCCHHHHHHHHHHHHHh
Q 041050          264 SEGGIRALLGMVR--------CGHPDVLSQVARGIANF  293 (408)
Q Consensus       264 ~~g~l~~L~~lL~--------~~~~~v~~~a~~aL~nL  293 (408)
                      +  .   +...|+        .+|+.+++.-...+.|+
T Consensus       228 ~--~---LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  228 Q--C---LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             H--H---S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred             H--h---CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            5  2   333443        24677776666666665

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.85  E-value=3.7  Score=39.88  Aligned_cols=191  Identities=17%  Similarity=0.191  Sum_probs=107.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh--CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC--ChhhH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEA--GGLSSLLMLLRSFEDETIRRVAAGAIANLAMN--AEANQ  217 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~--g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~--~~~~~  217 (408)
                      +...+..+.......|..++..+.++.........+.+.  -.+..+...++.+.. .-+..|+.++.-++..  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccH
Confidence            455566667777999999999998876432222222221  135667777775433 4455576766666544  22444


Q ss_pred             HHHHhcCcHHHHHHHhhcCC-CHHHHHHHHHHHHHHh----CCchhHHHHHhcccHHHHHHh--hc----------CCCH
Q 041050          218 ELIMAQGGISLLSTTAADAE-DPQTLRMVAGAIANLC----GNDKLQMKLRSEGGIRALLGM--VR----------CGHP  280 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~-~~~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l~~L~~l--L~----------~~~~  280 (408)
                      ..+++. ..|.|...+..+. .+.++..++.+|+-++    .++......++  .+..+...  .+          .+++
T Consensus       124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            555543 5678888876543 4556666665655543    22222221111  22222211  11          2235


Q ss_pred             HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                      .+...|+.+-+-|..               ..+..... ... ...+|.|+.+|.+.+.+||..|..+|.-|-
T Consensus       201 ~l~~aAL~aW~lLlt---------------~~~~~~~~-~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  201 ALVAAALSAWALLLT---------------TLPDSKLE-DLL-EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHHHHHHHHHHh---------------cCCHHHHH-HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            677666644444432               00111122 222 246899999999999999999988887664

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.80  E-value=0.37  Score=45.22  Aligned_cols=97  Identities=8%  Similarity=0.162  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh
Q 041050          197 TIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       197 ~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                      .....|+.+|--++.-+|.-+..+....++..|+.+|..+..+.+...++.+|..+. .++.|...+-+.+|+..+..++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            344557788888888779999999999999999999976677889999999998887 8899999999999999999999


Q ss_pred             cC--CCHHHHHHHHHHHHHh
Q 041050          276 RC--GHPDVLSQVARGIANF  293 (408)
Q Consensus       276 ~~--~~~~v~~~a~~aL~nL  293 (408)
                      ++  .+.+++..+...|.-.
T Consensus       186 k~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             ccccccHHHhHHHHHHHHHH
Confidence            64  4567877777544433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.79  E-value=0.91  Score=43.78  Aligned_cols=169  Identities=14%  Similarity=0.152  Sum_probs=110.5

Q ss_pred             HHHHH-HHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhH
Q 041050          183 LSSLL-MLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQ  259 (408)
Q Consensus       183 i~~L~-~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~  259 (408)
                      +..|+ ..+. +.++.+|+.|+.+|+-.|.-+......     .++.+...+ ..+++.++..++.++..+.  .....-
T Consensus        28 l~~lI~P~v~-~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~-~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   28 LDSLILPAVQ-SSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQAL-QKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            44444 3445 467899999999999988873322222     266777777 4458899999999999997  222221


Q ss_pred             HHH-------HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH
Q 041050          260 MKL-------RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ  332 (408)
Q Consensus       260 ~~i-------~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~  332 (408)
                      ...       .....++.+.+.+.+.+++++..|+.+++-|-.+                |.-..     ...++..|+-
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~----------------~~i~~-----~~~vL~~Lll  159 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS----------------GRISD-----PPKVLSRLLL  159 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc----------------CCCCc-----HHHHHHHHHH
Confidence            111       2245677788888888999999999999998741                11000     1233444433


Q ss_pred             hccC----CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          333 NANN----EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       333 lL~~----~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      +--+    +++.+|..-...+-..+......+..+..+.++.+..+.....
T Consensus       160 ~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~  210 (298)
T PF12719_consen  160 LYFNPSTEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD  210 (298)
T ss_pred             HHcCcccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3322    3567788878888888877665567777777777777776543

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.11  Score=54.10  Aligned_cols=184  Identities=20%  Similarity=0.213  Sum_probs=118.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHH---HHc--C-C-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          142 LHKILSLLESEDANVRIHAVKVVA---NLA--A-E-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~---nLa--~-~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      ....+.+++.++.++|..|+++++   |..  . . .....++.+. +...+...+. +....+|-.|+.+|+.+-.-++
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~-aF~~vC~~v~-D~sl~VRV~AaK~lG~~~~vSe  313 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDA-AFSSVCRAVR-DRSLSVRVEAAKALGEFEQVSE  313 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHH-HHHHHHHHHh-cCceeeeehHHHHhchHHHhHH
Confidence            445567788888999999876665   444  1 1 1223334333 5778888887 3567788889999888766655


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH--h------------CCchhHHHHHhcccHHHHHHhhcCCCH
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL--C------------GNDKLQMKLRSEGGIRALLGMVRCGHP  280 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL--~------------~~~~~~~~i~~~g~l~~L~~lL~~~~~  280 (408)
                      .....-.+..+...|-.--...+      ......++-  +            .+++.-..|+..|+.-+++.-+...--
T Consensus       314 e~i~QTLdKKlms~lRRkr~ahk------rpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~  387 (823)
T KOG2259|consen  314 EIIQQTLDKKLMSRLRRKRTAHK------RPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFY  387 (823)
T ss_pred             HHHHHHHHHHHhhhhhhhhhccc------chHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHH
Confidence            55554444433332211100001      111111111  0            123334567888999999998888888


Q ss_pred             HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      +|++.|...+..|+-                 ..+..     ...++..|+.+++.+..+||..|..+|..++.+
T Consensus       388 EVR~AAV~Sl~~La~-----------------ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  388 EVRRAAVASLCSLAT-----------------SSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHHc-----------------CCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999984                 22221     124678999999999999999999999998876

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.70  E-value=0.23  Score=43.19  Aligned_cols=144  Identities=13%  Similarity=0.093  Sum_probs=94.7

Q ss_pred             cHHHHHHHhhc-CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050          225 GISLLSTTAAD-AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQ  303 (408)
Q Consensus       225 ~i~~Lv~lL~~-~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~  303 (408)
                      .+..++..|.. ...++++..+.-++..+-  +..++...+ -.-..+-.++..++.+-...+..++..+=.        
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp--------   72 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFP--------   72 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCT--------
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhC--------
Confidence            34555655543 455678888888888773  333333322 223334445544444445566666666654        


Q ss_pred             HHhhhhhccCChhhHHHHH-hcCcHHHHHHhcc--CCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050          304 VRFIRCTATGVKSGRSLLI-EDGALPWIVQNAN--NEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR  380 (408)
Q Consensus       304 ~~~~i~~~~~~~~~~~~i~-~~g~l~~Lv~lL~--~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~  380 (408)
                               +.++.-..+. ..|.++.+.+++.  +++..++..++.+|..=|.+..++..+.+. +++.|.++...+++
T Consensus        73 ---------~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~-~~~~L~~~~~~~~~  142 (157)
T PF11701_consen   73 ---------GPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKN-YVSWLKELYKNSKD  142 (157)
T ss_dssp             ---------TTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHH-CHHHHHHHTTTCC-
T ss_pred             ---------CCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHccccc
Confidence                     7777666665 7899999999998  778888999999888888887776666555 57888999976666


Q ss_pred             HH-HHHHHHH
Q 041050          381 ED-IRSLAHR  389 (408)
Q Consensus       381 ~~-~~~~A~~  389 (408)
                      +. ++.+|.-
T Consensus       143 ~~~ir~~A~v  152 (157)
T PF11701_consen  143 DSEIRVLAAV  152 (157)
T ss_dssp             HH-CHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            66 7766663

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=94.66  E-value=1.9  Score=47.12  Aligned_cols=175  Identities=15%  Similarity=0.231  Sum_probs=108.9

Q ss_pred             HHHhCCHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---cCCC----HHHHHHH
Q 041050          177 IVEAGGLSSLLMLLRSFE----DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---DAED----PQTLRMV  245 (408)
Q Consensus       177 i~~~g~i~~L~~lL~~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---~~~~----~~v~~~a  245 (408)
                      +.+.||+..|+.++.+..    ........+..|...+.- +.||+.+.+.|+++.|+..+.   ..+.    +.+-...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            346899999999997532    345666678888888888 999999999999999987764   3323    4555555


Q ss_pred             HHHHHHHhCCchhHH-----HHHhcc--------cHHHHHHhhcC----CCHHHHHHHHHHHHHhhccchhhhhHHHhhh
Q 041050          246 AGAIANLCGNDKLQM-----KLRSEG--------GIRALLGMVRC----GHPDVLSQVARGIANFAKCESRAATQVRFIR  308 (408)
Q Consensus       246 ~~aL~nL~~~~~~~~-----~i~~~g--------~l~~L~~lL~~----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i  308 (408)
                      +.++--|........     ......        .+..+++.+.+    .++.+....++.|-+|+.             
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~-------------  258 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY-------------  258 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc-------------
Confidence            555555542211111     111112        26667776653    468899999999999997             


Q ss_pred             hhccCChhhHHHHHhcCcHHHHHHhcc--------CCCHHHHHHHHHHHHHHccC----c---hhHHHHHhCCcHHHHHH
Q 041050          309 CTATGVKSGRSLLIEDGALPWIVQNAN--------NEAAPIRRHIELALCHLAQH----E---VNAREMISGGALWELVR  373 (408)
Q Consensus       309 ~~~~~~~~~~~~i~~~g~l~~Lv~lL~--------~~~~~v~~~a~~aL~~La~~----~---~~~~~l~~~g~i~~L~~  373 (408)
                          |+++..+.+++     .+-++++        +++..+.   .-.++.++..    .   .-+..+++.|++...++
T Consensus       259 ----G~~e~m~~Lv~-----~F~p~l~f~~~D~~~~~~~~~~---Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~  326 (802)
T PF13764_consen  259 ----GNEEKMDALVE-----HFKPYLDFDKFDEEHSPDEQFK---LECFCEIAEGIPNNSNGNRLKDKILESGIVQDAID  326 (802)
T ss_pred             ----CCHHHHHHHHH-----HHHHhcChhhcccccCchHHHH---HHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHH
Confidence                77776666654     2222221        1122222   3334444432    1   23455668888887777


Q ss_pred             HHhc
Q 041050          374 ISRD  377 (408)
Q Consensus       374 ll~~  377 (408)
                      .+..
T Consensus       327 YL~~  330 (802)
T PF13764_consen  327 YLLK  330 (802)
T ss_pred             HHHH
Confidence            6654

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.66  E-value=0.18  Score=37.76  Aligned_cols=67  Identities=10%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcC
Q 041050          157 RIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQG  224 (408)
Q Consensus       157 ~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g  224 (408)
                      ...|+|++++++..+.....+.+.+.++.++++...++...+|-.|..+|.-++.. ....+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T-~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISST-EEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCC-HHHHHHHHHcC
Confidence            46799999999998888888878889999999998777889999999999999998 88877776654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.63  E-value=1.2  Score=46.32  Aligned_cols=100  Identities=20%  Similarity=0.249  Sum_probs=73.0

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMK  261 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~  261 (408)
                      ...++...+.  +...++.|+..|.....+.|+.++.-     +..++.+. +++|..|+..|...|-.+| .+++....
T Consensus        25 y~~il~~~kg--~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v~k   96 (556)
T PF05918_consen   25 YKEILDGVKG--SPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHVSK   96 (556)
T ss_dssp             HHHHHHGGGS---HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred             HHHHHHHccC--CHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence            3445555553  67899999999999999889888775     67788997 6788999999999999999 55677666


Q ss_pred             HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      +.     ..|+++|.++++.....+-.+|..|-.
T Consensus        97 va-----DvL~QlL~tdd~~E~~~v~~sL~~ll~  125 (556)
T PF05918_consen   97 VA-----DVLVQLLQTDDPVELDAVKNSLMSLLK  125 (556)
T ss_dssp             HH-----HHHHHHTT---HHHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            64     469999999998888888888888875

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=94.59  E-value=0.35  Score=38.48  Aligned_cols=90  Identities=12%  Similarity=0.059  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH--hcccHHHHHHhhc
Q 041050          199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR--SEGGIRALLGMVR  276 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~--~~g~l~~L~~lL~  276 (408)
                      |+.++.+|+..+..-+..-....+ ..+++++..+ .+++..||..|+.+|.|++...  +..+.  =...+..|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCF-DDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence            445566666554432222222222 2477788887 6788999999999999998332  22332  2457788888889


Q ss_pred             CCCHHHHHHHHHHHHHh
Q 041050          277 CGHPDVLSQVARGIANF  293 (408)
Q Consensus       277 ~~~~~v~~~a~~aL~nL  293 (408)
                      .+++.|+..| ..|-++
T Consensus        79 D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRL   94 (97)
T ss_pred             CCchhHHHHH-HHHHHH
Confidence            9999988644 555544

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=0.54  Score=50.08  Aligned_cols=166  Identities=20%  Similarity=0.276  Sum_probs=107.0

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050          147 SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI  226 (408)
Q Consensus       147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i  226 (408)
                      .+|.|.++.+-..++.+.+.+|-...+      ...+.+|+.+|.+  +..++...+..|+-++.-   .+..|     -
T Consensus       294 pLl~S~n~sVVmA~aql~y~lAP~~~~------~~i~kaLvrLLrs--~~~vqyvvL~nIa~~s~~---~~~lF-----~  357 (968)
T KOG1060|consen  294 PLLQSRNPSVVMAVAQLFYHLAPKNQV------TKIAKALVRLLRS--NREVQYVVLQNIATISIK---RPTLF-----E  357 (968)
T ss_pred             HHHhcCCcHHHHHHHhHHHhhCCHHHH------HHHHHHHHHHHhc--CCcchhhhHHHHHHHHhc---chhhh-----h
Confidence            566788899988999999888763211      1136789999985  567777776666666554   11111     1


Q ss_pred             HHHHHHhhcCCCH-HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050          227 SLLSTTAADAEDP-QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR  305 (408)
Q Consensus       227 ~~Lv~lL~~~~~~-~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~  305 (408)
                      |.+-.+.-.+.|| .+...=+.+|.||+........+.+      +.-..++.|.++...+..+|+-++.   +..    
T Consensus       358 P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE------~q~YI~s~d~~faa~aV~AiGrCA~---~~~----  424 (968)
T KOG1060|consen  358 PHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRE------LQTYIKSSDRSFAAAAVKAIGRCAS---RIG----  424 (968)
T ss_pred             hhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHH------HHHHHhcCchhHHHHHHHHHHHHHH---hhC----
Confidence            3333332234454 4555667788888754444444444      5555667776655555555555543   111    


Q ss_pred             hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                                     =+...++.+|+.++++.+..|..+++..|..|-+..
T Consensus       425 ---------------sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~  460 (968)
T KOG1060|consen  425 ---------------SVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD  460 (968)
T ss_pred             ---------------chhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence                           134568999999999999999999999999988763

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.50  E-value=2.1  Score=43.31  Aligned_cols=188  Identities=20%  Similarity=0.159  Sum_probs=111.0

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCC----HHHHHHHHHHHHHhccCCh
Q 041050          141 GLHKILSLLE-SEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFED----ETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       141 ~v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~----~~v~~~A~~aL~nLa~~~~  214 (408)
                      -+..++.+.. +.++..+..++..++.|+.. +...  .++ ..+..+...+.+..+    +......+|+...|....+
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DLD-EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hHH-HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            3566666654 56688889999998888763 1111  111 123333333311122    2333334455554444322


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chh--------HHHHHhcc----cHHHHHHhhcCCCHH
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKL--------QMKLRSEG----GIRALLGMVRCGHPD  281 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~--------~~~i~~~g----~l~~L~~lL~~~~~~  281 (408)
                      ..-..     .+..|+.++.   ++++-..++.++.-|..+ +..        -..+.++.    .+|.|++..+..+..
T Consensus       267 ~~~~~-----~~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~  338 (415)
T PF12460_consen  267 PLATE-----LLDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE  338 (415)
T ss_pred             chHHH-----HHHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh
Confidence            22222     2456778773   367888888888888755 322        12222333    355566666655666


Q ss_pred             HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      .+.....||+.+..                 .-|...-.--=..++|.|++.|..++.+++..+..+|..+..+.
T Consensus       339 ~k~~yL~ALs~ll~-----------------~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  339 IKSNYLTALSHLLK-----------------NVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hHHHHHHHHHHHHh-----------------hCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            77788889998885                 22221111111248999999999999999999999999998885

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.48  E-value=0.53  Score=48.33  Aligned_cols=191  Identities=15%  Similarity=0.200  Sum_probs=120.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHH----cCCchhHHHHHH-hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANL----AAEEANQEKIVE-AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nL----a~~~~~~~~i~~-~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      ++-|+.+|..+++++|..+-.+|.++    ...|..-    + ...++.++.-+.+ +++.++..|..-|...-.- +..
T Consensus       210 ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~s-s~~~iq~~al~Wi~efV~i-~g~  283 (675)
T KOG0212|consen  210 LDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM----DYDDMINVLVPHLQS-SEPEIQLKALTWIQEFVKI-PGR  283 (675)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc----CcccchhhccccccC-CcHHHHHHHHHHHHHHhcC-CCc
Confidence            45566888889999997777666544    3333321    2 2246777777774 5778888887766666555 444


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHH---HHHHHHHHHHHhCCchhHHHHHhcc-cHHHHHHhhcCCCHHHHHHHH-HHHH
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQT---LRMVAGAIANLCGNDKLQMKLRSEG-GIRALLGMVRCGHPDVLSQVA-RGIA  291 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v---~~~a~~aL~nL~~~~~~~~~i~~~g-~l~~L~~lL~~~~~~v~~~a~-~aL~  291 (408)
                      .-...-.|.+..++.++.+++...+   ....-+.+..+++.+...+. ++.| .+..+.+.+.++..+.+-.|. |...
T Consensus       284 ~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~  362 (675)
T KOG0212|consen  284 DLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIIL  362 (675)
T ss_pred             chhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            4444556666677777643333223   22333344555555544433 3333 567777788888888888777 4444


Q ss_pred             HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh
Q 041050          292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN  358 (408)
Q Consensus       292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~  358 (408)
                      -...                   ..++-....+...+-|..-|.+.++++...+...+.++|.+++.
T Consensus       363 l~~~-------------------~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  363 LYHK-------------------APGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHhh-------------------CcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCccc
Confidence            4332                   11222223456788888999989999999999999999988544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.42  E-value=0.42  Score=51.59  Aligned_cols=183  Identities=11%  Similarity=0.040  Sum_probs=117.3

Q ss_pred             HHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH--HHHHHhhcC-CCHH
Q 041050          205 AIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI--RALLGMVRC-GHPD  281 (408)
Q Consensus       205 aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l--~~L~~lL~~-~~~~  281 (408)
                      +|+++..++++++..+.+.||...+...+..-...++++.+.+.+.|++.-.+.+........+  ...-.++.. ++.+
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            9999999999999999999999999999976677889999999999999444443322211111  233334443 4447


Q ss_pred             HHHHHHHHHHHhhccchh---------hhhHHHhhhhhccCChhhHHHHHhcCcHHH-HHHhcc-CCCHHHHHHHHHHHH
Q 041050          282 VLSQVARGIANFAKCESR---------AATQVRFIRCTATGVKSGRSLLIEDGALPW-IVQNAN-NEAAPIRRHIELALC  350 (408)
Q Consensus       282 v~~~a~~aL~nL~~~~~~---------~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~-Lv~lL~-~~~~~v~~~a~~aL~  350 (408)
                      .-..|+..++.+...+..         +..-+.+++..   .+.....+.-+....+ +..++. +..+..+..|.|++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~---~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~  650 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISR---WLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIK  650 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhc---cCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHH
Confidence            888899999998863221         11111111111   1111111222233333 444443 346778889999999


Q ss_pred             HHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050          351 HLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRT  390 (408)
Q Consensus       351 ~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~  390 (408)
                      +++.. +++.+.+.+.|+++.+.++-......+.+..+...
T Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (699)
T KOG3665|consen  651 NVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLV  691 (699)
T ss_pred             HHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHH
Confidence            98876 66666677999999888876644444455555433

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.11  E-value=1  Score=39.86  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=63.8

Q ss_pred             CCchhHHHHHhcccHHHHHHhhcC---------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-
Q 041050          254 GNDKLQMKLRSEGGIRALLGMVRC---------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-  323 (408)
Q Consensus       254 ~~~~~~~~i~~~g~l~~L~~lL~~---------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-  323 (408)
                      ....+-..+++.||+..|+..|..         .+.+....+.+|+..+.                  .+..+...++. 
T Consensus        95 ~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~------------------n~~~G~~~v~~~  156 (187)
T PF06371_consen   95 NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM------------------NTKYGLEAVLSH  156 (187)
T ss_dssp             S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT------------------SSHHHHHHHHCS
T ss_pred             CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH------------------ccHHHHHHHHcC
Confidence            344667788889999999987731         35578888999999987                  56777777774 


Q ss_pred             cCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          324 DGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       324 ~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                      .+++..|+..+.+.+..++..|..+|..+|
T Consensus       157 ~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  157 PDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             SSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            788999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=94.11  E-value=2.7  Score=40.48  Aligned_cols=167  Identities=16%  Similarity=0.198  Sum_probs=101.7

Q ss_pred             HHHHH-HhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-hhHH
Q 041050          142 LHKIL-SLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-ANQE  218 (408)
Q Consensus       142 v~~Ll-~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~  218 (408)
                      ++.|+ ..+.++++.+|+.|+..|+-.+. +......     .++.+...+.. ++..++..|+.++..+...++ ..-+
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~-~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQK-DDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            45555 77899999999999999998887 4433322     37778888864 588999999999998766522 1111


Q ss_pred             HH-------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC----CCHHHHHHHH
Q 041050          219 LI-------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC----GHPDVLSQVA  287 (408)
Q Consensus       219 ~i-------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~----~~~~v~~~a~  287 (408)
                      ..       .....+..+...+ .+.++.++..++..++.|-.+.....   ....+..|+-+.-+    +++.++..-.
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFL-DSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             chhccCccchHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            11       1123344566676 45688999999999999863322221   12233334443322    2344443333


Q ss_pred             HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050          288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      ..+-.++.                 .++.++. .+....+|.+-.+.+.
T Consensus       178 ~Ffp~y~~-----------------s~~~~Q~-~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  178 VFFPVYAS-----------------SSPENQE-RLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHc-----------------CCHHHHH-HHHHHHHHHHHHHHhC
Confidence            55566664                 4444443 4444677776666654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.01  E-value=2.1  Score=40.18  Aligned_cols=135  Identities=13%  Similarity=0.098  Sum_probs=91.5

Q ss_pred             HHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcC---C-CCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHh
Q 041050          159 HAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS---F-EDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTA  233 (408)
Q Consensus       159 ~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~---~-~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL  233 (408)
                      .|+..|.-+|.+|+.|..+++....--|.-.|+.   . +-+.+|-.++++++.|... +++....+.+++.+|..+..+
T Consensus        69 naLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m  148 (262)
T PF04078_consen   69 NALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM  148 (262)
T ss_dssp             HHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence            3444445677799999999998764333344432   2 2356788899999999873 367778888999999999988


Q ss_pred             hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHH-HhhcCCCHHHHHHHHHHHHHhh
Q 041050          234 ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALL-GMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       234 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~-~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      .. .++-.+..|..++..+-.++.+-..++..        .++..++ .+...+++.+.+++.++-.-|+
T Consensus       149 e~-GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLs  217 (262)
T PF04078_consen  149 EF-GSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLS  217 (262)
T ss_dssp             HH-S-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHT
T ss_pred             Hh-ccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHc
Confidence            54 55567777887887877777665555431        1233333 3446789999999999999998

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=93.99  E-value=3.1  Score=39.07  Aligned_cols=160  Identities=13%  Similarity=0.169  Sum_probs=92.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      +..+.+....++.......+.+|+....          ..++|.|+..|... ..+-+|-.|..+|.++...        
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~----------~~Av~~l~~vl~desq~pmvRhEAaealga~~~~--------   99 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP--------   99 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc----------chhhHHHHHHhcccccchHHHHHHHHHHHhhcch--------
Confidence            4555555555555555556666655433          55799999988743 3466777799999998833        


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-C---------------CchhHHHHHhcccHHHHHH-hhcCCCHHH-
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-G---------------NDKLQMKLRSEGGIRALLG-MVRCGHPDV-  282 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~---------------~~~~~~~i~~~g~l~~L~~-lL~~~~~~v-  282 (408)
                         +..+.|-+.. +.+...+...+..++..+- .               +|...   ...+-+.-|-. ++....+.. 
T Consensus       100 ---~~~~~l~k~~-~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~~  172 (289)
T KOG0567|consen  100 ---ESLEILTKYI-KDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLFE  172 (289)
T ss_pred             ---hhHHHHHHHh-cCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHHH
Confidence               2455565664 4555566666666666553 1               11111   01111222333 334444444 


Q ss_pred             HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +..|...|+|+.                   +.+         .+..|++-+..++.-.|.+++.+++.|-.
T Consensus       173 Ry~amF~LRn~g-------------------~Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s  216 (289)
T KOG0567|consen  173 RYRAMFYLRNIG-------------------TEE---------AINALIDGLADDSALFRHEVAFVFGQLQS  216 (289)
T ss_pred             HHhhhhHhhccC-------------------cHH---------HHHHHHHhcccchHHHHHHHHHHHhhccc
Confidence            445667787773                   333         44556666666777788888888866654

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.98  E-value=1.1  Score=49.90  Aligned_cols=147  Identities=13%  Similarity=0.140  Sum_probs=110.5

Q ss_pred             HHHHHHhhc----CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          142 LHKILSLLE----SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       142 v~~Ll~lL~----s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      .|.++...+    ..++++|..|.-+|+.+.. +.    .+.+. .+|.|+..+..+++|.+|..++-+++-++...|..
T Consensus       921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa----~fces-~l~llftimeksp~p~IRsN~VvalgDlav~fpnl  995 (1251)
T KOG0414|consen  921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISA----EFCES-HLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL  995 (1251)
T ss_pred             HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH----HHHHH-HHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence            355556663    4679999999999998754 33    23333 68999999997789999999999999888875544


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC  296 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~  296 (408)
                      .+..     .+.|...| .++++.+++.|.-+|.+|-.++    .+.-.|.+.-+...+..+++.+...|-.-+-.|+ .
T Consensus       996 ie~~-----T~~Ly~rL-~D~~~~vRkta~lvlshLILnd----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els-~ 1064 (1251)
T KOG0414|consen  996 IEPW-----TEHLYRRL-RDESPSVRKTALLVLSHLILND----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS-S 1064 (1251)
T ss_pred             cchh-----hHHHHHHh-cCccHHHHHHHHHHHHHHHHhh----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh-h
Confidence            4443     34566666 5688999999999999998653    3344688888888999999999988887888887 4


Q ss_pred             chhhhhHH
Q 041050          297 ESRAATQV  304 (408)
Q Consensus       297 ~~~~~~~~  304 (408)
                      ..+..+++
T Consensus      1065 k~n~iynl 1072 (1251)
T KOG0414|consen 1065 KGNTIYNL 1072 (1251)
T ss_pred             cccchhhh
Confidence            44655554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.91  E-value=0.072  Score=32.70  Aligned_cols=30  Identities=27%  Similarity=0.419  Sum_probs=26.0

Q ss_pred             cHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          326 ALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      ++|.+++++.+++++||..|+.+|..++.+
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.87  E-value=0.31  Score=50.82  Aligned_cols=192  Identities=16%  Similarity=0.153  Sum_probs=107.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh------hhHH
Q 041050          145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE------ANQE  218 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------~~~~  218 (408)
                      ++.+..+.+..+|.+|+..|..|+..-..-..     -....+.+++ +++..||..|+.+++-.+.-.|      ....
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~ls-D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLS-DDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhc-chHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            66677777888888888887777652211111     1455677887 4678899998666554433211      1111


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc-
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE-  297 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~-  297 (408)
                      .. ...++..+...+ ++.+-.++..|+.+|+.+-   .....++..-.=+.+++-++..-. -.+......++--+.+ 
T Consensus       277 kl-~D~aF~~vC~~v-~D~sl~VRV~AaK~lG~~~---~vSee~i~QTLdKKlms~lRRkr~-ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  277 KL-KDAAFSSVCRAV-RDRSLSVRVEAAKALGEFE---QVSEEIIQQTLDKKLMSRLRRKRT-AHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hh-HHHHHHHHHHHH-hcCceeeeehHHHHhchHH---HhHHHHHHHHHHHHHhhhhhhhhh-cccchHHHHhcCCcccC
Confidence            12 223566677776 4455678888888887664   112223322222334433321100 0011112223321100 


Q ss_pred             ----hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050          298 ----SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV  357 (408)
Q Consensus       298 ----~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~  357 (408)
                          .++..+         .++....-++..|+-..++.=+..+-.+||+.|+..++.|+...+
T Consensus       351 k~~~advpse---------e~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP  405 (823)
T KOG2259|consen  351 KEWNADVPSE---------EDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSP  405 (823)
T ss_pred             ccccccCchh---------hccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCC
Confidence                000111         123334456788999999999999999999999999999999743

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.81  E-value=0.34  Score=43.03  Aligned_cols=81  Identities=10%  Similarity=0.026  Sum_probs=64.9

Q ss_pred             hhhHHHHHhcCcHHHHHHHhh--------cCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHH
Q 041050          214 EANQELIMAQGGISLLSTTAA--------DAEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLS  284 (408)
Q Consensus       214 ~~~~~~i~~~g~i~~Lv~lL~--------~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~  284 (408)
                      ..-.+.|++.||+..|+.+|.        ...+......++.++..|+.++.+...+.+ .+++..|...+.++++.++.
T Consensus        97 ~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~  176 (187)
T PF06371_consen   97 ISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRK  176 (187)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHH
T ss_pred             chHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHH
Confidence            345667778899999998874        225567888999999999988888888775 67899999999999999999


Q ss_pred             HHHHHHHHhh
Q 041050          285 QVARGIANFA  294 (408)
Q Consensus       285 ~a~~aL~nL~  294 (408)
                      .|+..|+.+|
T Consensus       177 ~~leiL~~lc  186 (187)
T PF06371_consen  177 LALEILAALC  186 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=93.81  E-value=2.8  Score=40.72  Aligned_cols=151  Identities=20%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCC---chhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhcc---CCh
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAE---EANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAM---NAE  214 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~---~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~---~~~  214 (408)
                      ++.+...++.+..+-+..|++++.-++..   ......+++. ..|.|..++.+.. .+.+|..++.+|+-++.   ..+
T Consensus        88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~  166 (309)
T PF05004_consen   88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE  166 (309)
T ss_pred             HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence            56667777777666677788887766652   3455566664 6788888887543 45566666656655433   323


Q ss_pred             hhHHHHHhcCcHHH--HHHHhh---------cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHH
Q 041050          215 ANQELIMAQGGISL--LSTTAA---------DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDV  282 (408)
Q Consensus       215 ~~~~~i~~~g~i~~--Lv~lL~---------~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v  282 (408)
                      ......++  .+..  ....+.         ..+++.+...|+.+-+-|. .-+...-.-.-...++.|+.+|.+++.+|
T Consensus       167 ~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~V  244 (309)
T PF05004_consen  167 EETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDV  244 (309)
T ss_pred             hHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            22221111  1111  111111         1234567777776666665 33332111112356899999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 041050          283 LSQVARGIANFAK  295 (408)
Q Consensus       283 ~~~a~~aL~nL~~  295 (408)
                      |..|..+|+-|-.
T Consensus       245 RiAAGEaiAll~E  257 (309)
T PF05004_consen  245 RIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998863

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=5.5  Score=42.33  Aligned_cols=101  Identities=11%  Similarity=0.126  Sum_probs=67.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050          227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVR  305 (408)
Q Consensus       227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~~  305 (408)
                      ..|-.++ .+.++.++-.++..++.||.+....+.+..+  ...++..|+ ..|..+++.|.-.|-.+|. .+++     
T Consensus       332 ~~Lg~fl-s~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD-~~Na-----  402 (938)
T KOG1077|consen  332 NQLGQFL-SHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD-VSNA-----  402 (938)
T ss_pred             HHHHHHh-hcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc-hhhH-----
Confidence            3444444 3344556666666666666665555665554  677888887 7889999999999999873 1111     


Q ss_pred             hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                                   .     .+|..+.+++.+-++.+|+..+.=+.-|+.
T Consensus       403 -------------k-----~IV~elLqYL~tAd~sireeivlKvAILaE  433 (938)
T KOG1077|consen  403 -------------K-----QIVAELLQYLETADYSIREEIVLKVAILAE  433 (938)
T ss_pred             -------------H-----HHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence                         1     245678888888888888887655555553

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=93.47  E-value=9  Score=42.59  Aligned_cols=230  Identities=14%  Similarity=0.106  Sum_probs=126.0

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  212 (408)
                      .+++| +.++.|++.+++.+..+|..|+.-++.++. .|   ..+++. .|...+.++...+++..-..|+-+|+.|+..
T Consensus       336 ~eivE-~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~r  410 (1133)
T KOG1943|consen  336 PEIVE-FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALR  410 (1133)
T ss_pred             HHHHH-HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhc
Confidence            34443 347888888999999999999999999988 44   222222 4666667666444455566788999999887


Q ss_pred             ChhhHHHHHhcCcHHHHHHHhh-------cCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHH-HhhcCCCHHH
Q 041050          213 AEANQELIMAQGGISLLSTTAA-------DAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALL-GMVRCGHPDV  282 (408)
Q Consensus       213 ~~~~~~~i~~~g~i~~Lv~lL~-------~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~-~lL~~~~~~v  282 (408)
                      . -..-...+ ..+|.++.-+.       .+....|+..|+.++|.++  .++.--.-+.. .....|+ ..+-+++-..
T Consensus       411 G-lLlps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~-~L~s~LL~~AlFDrevnc  487 (1133)
T KOG1943|consen  411 G-LLLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ-SLASALLIVALFDREVNC  487 (1133)
T ss_pred             C-CcchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH-HHHHHHHHHHhcCchhhH
Confidence            2 11111111 14555554442       2233468999999999998  33221111211 1222222 2334566677


Q ss_pred             HHHHHHHHHHhhccchhh--hhHHH---------------hhhhh-ccCChhhHHHHHhcCcHHHHHHh-ccCCCHHHHH
Q 041050          283 LSQVARGIANFAKCESRA--ATQVR---------------FIRCT-ATGVKSGRSLLIEDGALPWIVQN-ANNEAAPIRR  343 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~~~--~~~~~---------------~~i~~-~~~~~~~~~~i~~~g~l~~Lv~l-L~~~~~~v~~  343 (408)
                      ++.|..|+.....--.+.  -+.++               +.+|. ++..+.++..+     +..|+.. +.+-+..+|.
T Consensus       488 RRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd~~ire  562 (1133)
T KOG1943|consen  488 RRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWDVKIRE  562 (1133)
T ss_pred             hHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhcccccccHHHHH
Confidence            888888887765310110  00000               00111 11222222222     2233322 4556899999


Q ss_pred             HHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          344 HIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       344 ~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      .++++|..|+.....   ....+..++|+.-..+.+
T Consensus       563 laa~aL~~Ls~~~pk---~~a~~~L~~lld~~ls~~  595 (1133)
T KOG1943|consen  563 LAAYALHKLSLTEPK---YLADYVLPPLLDSTLSKD  595 (1133)
T ss_pred             HHHHHHHHHHHhhHH---hhcccchhhhhhhhcCCC
Confidence            999999998875321   123344555555443333

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.37  E-value=0.14  Score=31.32  Aligned_cols=28  Identities=29%  Similarity=0.414  Sum_probs=24.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA  169 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~  169 (408)
                      +|.++++++++++++|..|+.+|++++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999998863

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=93.25  E-value=4.6  Score=40.10  Aligned_cols=91  Identities=20%  Similarity=0.248  Sum_probs=61.3

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCH-HHHHHHHHHHHHhccCChhhHHH
Q 041050          142 LHKILSLLE-SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDE-TIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~-~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      |.-++.-+. +....+|..++--|+.-+.++..+..+...|..+.++..+....+. ...-.++.+++-++.+ ...-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d-~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRD-GLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccC-Ccchhh
Confidence            555565555 4556889999988888888999999999999999999999543333 3333445555666666 444444


Q ss_pred             HHhcCcHHHHHHHh
Q 041050          220 IMAQGGISLLSTTA  233 (408)
Q Consensus       220 i~~~g~i~~Lv~lL  233 (408)
                      +.+.+....++.++
T Consensus       102 ~~~~~~~~ll~~Ll  115 (361)
T PF07814_consen  102 LLDRDSLRLLLKLL  115 (361)
T ss_pred             hhchhHHHHHHHHh
Confidence            44444444445544

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.14  E-value=3.6  Score=44.57  Aligned_cols=220  Identities=14%  Similarity=0.094  Sum_probs=134.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA  222 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~  222 (408)
                      +.-+..+.++...++..|+..|..+.........+...+.+...+..|++ +|+-+--.|...+..||.-        ..
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lkd-edsyvyLnaI~gv~~Lcev--------y~  800 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKD-EDSYVYLNAIRGVVSLCEV--------YP  800 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcc-cCceeeHHHHHHHHHHHHh--------cc
Confidence            44445556677889999999999998877777888888889999999994 5665666677766666653        22


Q ss_pred             cCcHHHHHH-HhhcCCC--HHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          223 QGGISLLST-TAADAED--PQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       223 ~g~i~~Lv~-lL~~~~~--~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                      ...+|.|.+ .......  ++.+..+-.++.+++  .++-..... . -.+..-+...+.+|...+...+..+++|+.  
T Consensus       801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq--  876 (982)
T KOG4653|consen  801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-A-VLINTFLSGVREPDHEFRASSLANLGQLCQ--  876 (982)
T ss_pred             hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-H-HHHHHHHHhcCCchHHHHHhHHHHHHHHHH--
Confidence            345676666 3322222  355556667887776  232222111 1 233445556677777778888999999985  


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCch-hHHHHH---hCCcHHHHH
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEV-NAREMI---SGGALWELV  372 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~-~~~~l~---~~g~i~~L~  372 (408)
                            +        ...-+.+.+.  .++..++.+.+. +..-+|+.|+..+..+-.+.. ....+.   -......+.
T Consensus       877 ------~--------~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~  940 (982)
T KOG4653|consen  877 ------L--------LAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLL  940 (982)
T ss_pred             ------H--------HhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence                  0        0000011222  255566666654 477789999999988877632 222222   223344555


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 041050          373 RISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       373 ~ll~~~~~~~~~~~A~~~L  391 (408)
                      ...+...++..+-.|..++
T Consensus       941 ~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  941 SYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             HHHhcCchhHHHHHHHHHH
Confidence            5556555555666666444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.11  E-value=1.3  Score=47.96  Aligned_cols=169  Identities=18%  Similarity=0.196  Sum_probs=114.0

Q ss_pred             HHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH--HHHHHhhcCCCH
Q 041050          163 VVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS--LLSTTAADAEDP  239 (408)
Q Consensus       163 aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~--~Lv~lL~~~~~~  239 (408)
                      +|++++. ++++...+++.||+..+...++..+..+++..+.+.+.|++.. ...+.......-+.  .+-.++.+.++.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcchh
Confidence            8889988 8999999999999999999999777889999999999999998 55544433222222  333344455555


Q ss_pred             HHHHHHHHHHHHHhCCch-h---------HHHHHh--------------cccHHH-HHHhhc-CCCHHHHHHHHHHHHHh
Q 041050          240 QTLRMVAGAIANLCGNDK-L---------QMKLRS--------------EGGIRA-LLGMVR-CGHPDVLSQVARGIANF  293 (408)
Q Consensus       240 ~v~~~a~~aL~nL~~~~~-~---------~~~i~~--------------~g~l~~-L~~lL~-~~~~~v~~~a~~aL~nL  293 (408)
                      +.--.+++.++.+..+.+ .         .+.+.+              ..-+.+ +..++. +..+..+..|.|++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            777788899988874311 1         111111              111222 444553 45567778899999999


Q ss_pred             hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHH
Q 041050          294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELAL  349 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL  349 (408)
                      +.                 -++++...+.+.|+++.+...-.. ...+++..+...+
T Consensus       653 ~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  653 LE-----------------QNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             HH-----------------cChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            97                 667777778888888877765432 2444555554444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=93.10  E-value=1.2  Score=45.93  Aligned_cols=194  Identities=13%  Similarity=0.214  Sum_probs=99.6

Q ss_pred             cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH--------HHH
Q 041050          150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE--------LIM  221 (408)
Q Consensus       150 ~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~--------~i~  221 (408)
                      ++.+..+--.|...|.. ++++++...++..  |+..+.=++    ...+..+..++..||...|.-+.        .+.
T Consensus       350 sd~Nr~IstyAITtLLK-TGt~e~idrLv~~--I~sfvhD~S----D~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~  422 (898)
T COG5240         350 SDENRTISTYAITTLLK-TGTEETIDRLVNL--IPSFVHDMS----DGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL  422 (898)
T ss_pred             hcccccchHHHHHHHHH-cCchhhHHHHHHH--HHHHHHhhc----cCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH
Confidence            33444443334333332 2345555555544  555444443    13444455555555555443332        234


Q ss_pred             hcCcHH-------HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-------cc--------cHHHHHHhhcCCC
Q 041050          222 AQGGIS-------LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-------EG--------GIRALLGMVRCGH  279 (408)
Q Consensus       222 ~~g~i~-------~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-------~g--------~l~~L~~lL~~~~  279 (408)
                      +.||..       .+..++.  .+|+.++.|+..|+.+-.+-+..+..++       +|        .+..+...+--.+
T Consensus       423 ~eGg~eFK~~~Vdaisd~~~--~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN  500 (898)
T COG5240         423 QEGGLEFKKYMVDAISDAME--NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILEN  500 (898)
T ss_pred             hcccchHHHHHHHHHHHHHh--hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhh
Confidence            455543       3444442  3455666555555555433333222221       11        1223333333445


Q ss_pred             HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH
Q 041050          280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA  359 (408)
Q Consensus       280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~  359 (408)
                      .-++..|..||..++.+.++.                    +....+...|..+++..++++|..|..++.++-..+.+.
T Consensus       501 ~ivRsaAv~aLskf~ln~~d~--------------------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da~~  560 (898)
T COG5240         501 NIVRSAAVQALSKFALNISDV--------------------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDACE  560 (898)
T ss_pred             hHHHHHHHHHHHHhccCcccc--------------------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhhhh
Confidence            667777778887776521111                    112234456777889899999999999999987444332


Q ss_pred             HHHH---hCCcHHHHHH
Q 041050          360 REMI---SGGALWELVR  373 (408)
Q Consensus       360 ~~l~---~~g~i~~L~~  373 (408)
                       .++   +.|-+|.|..
T Consensus       561 -pl~~sd~~~dipsle~  576 (898)
T COG5240         561 -PLFSSDELGDIPSLEL  576 (898)
T ss_pred             -ccccccccCCcchhHH
Confidence             344   4666666654

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.93  E-value=3.7  Score=42.35  Aligned_cols=172  Identities=13%  Similarity=0.136  Sum_probs=109.2

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCC---HHHHHHHHHHHHHHhCCchhH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAED---PQTLRMVAGAIANLCGNDKLQ  259 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~---~~v~~~a~~aL~nL~~~~~~~  259 (408)
                      ...++.++.++ +..-+..|..-|..++.+ +.....++...|+..|..++.+...   .+++...++++..+....-..
T Consensus        85 a~~i~e~l~~~-~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEG-NNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCC-CcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            34567777654 444455599999999999 9999999999999999999865443   345555555555443111000


Q ss_pred             HHHHhcccHHHHHHhh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050          260 MKLRSEGGIRALLGMV--RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE  337 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~  337 (408)
                      =......++..+..+.  +..+..+...|...|-++..                 +++..+..+.+.--+..|+..+...
T Consensus       163 W~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----------------~s~~~~~~v~eev~i~~li~hlq~~  225 (713)
T KOG2999|consen  163 WESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVL-----------------GSDTLRQLVAEEVPIETLIRHLQVS  225 (713)
T ss_pred             eeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----------------CChHHHHHHHhcCcHHHHHHHHHhc
Confidence            0011112222233333  22344555666677777765                 6777777888888899999999999


Q ss_pred             CHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHH
Q 041050          338 AAPIRRHIELALCHLAQH--EVNAREMISGGALWELVR  373 (408)
Q Consensus       338 ~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~  373 (408)
                      +..++..|...+..+-..  ++.+..+++.-....+..
T Consensus       226 n~~i~~~aial~nal~~~a~~~~R~~~~~~l~~~~~R~  263 (713)
T KOG2999|consen  226 NQRIQTCAIALLNALFRKAPDDKRFEMAKSLEQKQFRN  263 (713)
T ss_pred             chHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Confidence            999999977777766654  334455554433333333

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.79  E-value=1.7  Score=46.26  Aligned_cols=138  Identities=14%  Similarity=0.179  Sum_probs=99.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ++.++......|.+++.-.--.|.|-+. .|...     .+++..++.=.. ++++.+|..|+..++.+-.+  ...+.+
T Consensus        51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~-d~np~iR~lAlrtm~~l~v~--~i~ey~  122 (734)
T KOG1061|consen   51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCE-DPNPLIRALALRTMGCLRVD--KITEYL  122 (734)
T ss_pred             hHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCC-CCCHHHHHHHhhceeeEeeh--HHHHHH
Confidence            4556666666777777777777888777 44333     234555555555 46888998888887766554  222222


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                           ..+|...+ ++++|-+++.++-.++++-.  .........|.+..|..++.+++|.|..+|..+|..+..
T Consensus       123 -----~~Pl~~~l-~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e  189 (734)
T KOG1061|consen  123 -----CDPLLKCL-KDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHE  189 (734)
T ss_pred             -----HHHHHHhc-cCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence                 45677776 67888999888888888752  233456678899999999999999999999999999985

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=92.77  E-value=0.25  Score=49.80  Aligned_cols=172  Identities=12%  Similarity=0.145  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-----CCch---hHHHHHhccc
Q 041050          196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-----GNDK---LQMKLRSEGG  267 (408)
Q Consensus       196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-----~~~~---~~~~i~~~g~  267 (408)
                      .-++..|..++.-+..+..-.++.+.-.++...+.+.+ .+..-..+..++|+++|+.     +-|.   .+..+... .
T Consensus       405 ~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~-l  482 (728)
T KOG4535|consen  405 RLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL-L  482 (728)
T ss_pred             HHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH-H
Confidence            33555566666666666233344454555566666665 3345568899999999996     3343   22333222 1


Q ss_pred             HHHHHHhh---cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cCCCHHHHH
Q 041050          268 IRALLGMV---RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NNEAAPIRR  343 (408)
Q Consensus       268 l~~L~~lL---~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~v~~  343 (408)
                      +..+....   ..+...|+.++.++|.|+..        ++.++      .+.-...+.+|.+..+.... -....+|+-
T Consensus       483 l~~~~~~A~~~~Ad~dkV~~navraLgnllQ--------vlq~i------~~~~~~e~~~~~~~~l~~~v~~~~~~kV~W  548 (728)
T KOG4535|consen  483 LLKMLRSAIEASADKDKVKSNAVRALGNLLQ--------FLQPI------EKPTFAEIIEESIQALISTVLTEAAMKVRW  548 (728)
T ss_pred             HHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH--------HHHHh------hhccHHHHHHHHHHhcccceecccccccch
Confidence            22233322   22445688899999999873        22111      11111122334444443332 345788999


Q ss_pred             HHHHHHHHHccCchh-HHHHH-hCCcHHHHHHHHhcCCHHHH
Q 041050          344 HIELALCHLAQHEVN-AREMI-SGGALWELVRISRDCSREDI  383 (408)
Q Consensus       344 ~a~~aL~~La~~~~~-~~~l~-~~g~i~~L~~ll~~~~~~~~  383 (408)
                      +||.+++||-.++.- ...+- ...+.+.|..++++..+-.+
T Consensus       549 NaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKV  590 (728)
T KOG4535|consen  549 NACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKV  590 (728)
T ss_pred             HHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceE
Confidence            999999999988543 12221 33356677777776554443

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=92.75  E-value=5.5  Score=41.14  Aligned_cols=153  Identities=15%  Similarity=0.213  Sum_probs=105.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCC---HHHHHHHHHHHHHhccCChhhHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFED---ETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~---~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ...+.+.+.+++...+..|..-|..++.++.....++...|+..|.+++.++..   .++....+.+...+-.+ ...-=
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmeh-gvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEH-GVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhh-ceeee
Confidence            456778888888888888999999999999999999999999999999986533   34455455555554333 11000


Q ss_pred             HHHhcCcHHHHHHHhh-cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          219 LIMAQGGISLLSTTAA-DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~-~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ..+...+|.....+.. +-.+..+...|+..+-++. +++..++.+.++--+..|+..+...+..++..|...+-.+..
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            0111112222222221 2344567788889999998 666788888888889999999998888888876655555543

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=92.52  E-value=0.46  Score=49.92  Aligned_cols=131  Identities=15%  Similarity=0.071  Sum_probs=97.3

Q ss_pred             CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHH
Q 041050          194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALL  272 (408)
Q Consensus       194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~  272 (408)
                      .|+.++..|.-.|+.+---+......     -+|.|+..+.++++|.++.+++-.++.+.-+ ....+..     -..|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~e-----hlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCSE-----HLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence            68889998888887553221322222     3799999998899999999999999988622 1111222     23477


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      +.|...+.+|++.|..++.+|..                +|      .+.-.|-++.+..+|.+++..+...|-..+..+
T Consensus       978 rrL~De~~~V~rtclmti~fLil----------------ag------q~KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         978 RRLGDEDADVRRTCLMTIHFLIL----------------AG------QLKVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             HHhcchhhHHHHHHHHHHHHHHH----------------cc------ceeeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            77888999999999999999874                12      122358889999999999999999999999999


Q ss_pred             ccCc
Q 041050          353 AQHE  356 (408)
Q Consensus       353 a~~~  356 (408)
                      |..+
T Consensus      1036 a~Kd 1039 (1128)
T COG5098        1036 AKKD 1039 (1128)
T ss_pred             Hhcc
Confidence            8764

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=92.44  E-value=13  Score=37.87  Aligned_cols=173  Identities=14%  Similarity=0.168  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHHc-C-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--CcHH
Q 041050          152 EDANVRIHAVKVVANLA-A-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ--GGIS  227 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa-~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--g~i~  227 (408)
                      +..+-+..|..-|..+. . .-..+++.+.. .+..++..|+++.+...+..|+.+|.-++.+.+ .+  +++.  -.|.
T Consensus       299 e~a~~~k~alsel~~m~~e~sfsvWeq~f~~-iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~--l~DstE~ai~  374 (516)
T KOG2956|consen  299 ERASERKEALSELPKMLCEGSFSVWEQHFAE-ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-AR--LFDSTEIAIC  374 (516)
T ss_pred             cchhHHHHHHHHHHHHHHccchhHHHHHHHH-HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-Hh--hhchHHHHHH
Confidence            34566677777555443 3 33455555554 467888999866788899999999999988732 22  2211  1333


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHH-h-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHH
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANL-C-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR  305 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL-~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~  305 (408)
                      .++..- ...++.+.+.|...+..+ + .+|..        .+..+..++...|...--.+...+.-+...         
T Consensus       375 K~Leaa-~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~---------  436 (516)
T KOG2956|consen  375 KVLEAA-KDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFER---------  436 (516)
T ss_pred             HHHHHH-hCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhh---------
Confidence            444443 344555666665554444 3 33322        122244444333333333333344444320         


Q ss_pred             hhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       306 ~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                            ..-+..-. ++ ..+.|.+++-..+.+..||+.|+++|..+..
T Consensus       437 ------l~~EeL~~-ll-~diaP~~iqay~S~SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  437 ------LSAEELLN-LL-PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------cCHHHHHH-hh-hhhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence                  00011111 11 3688999999999999999999999987764

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.34  E-value=3.2  Score=44.06  Aligned_cols=109  Identities=20%  Similarity=0.216  Sum_probs=75.5

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ++.+..++....+++..||...+..|+-+..+...+..-+-.+...+|..-+. +..+.||..|+.+|+.+-.+ +..- 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~-Drep~VRiqAv~aLsrlQ~d-~~de-  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK-DREPNVRIQAVLALSRLQGD-PKDE-  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHhcC-CCCC-
Confidence            44566667777789999999999999998874333333333335666766666 35789999999999999754 2211 


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND  256 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~  256 (408)
                         +..++..+..++..+++++|++.|+   .|++-++
T Consensus       161 ---e~~v~n~l~~liqnDpS~EVRRaaL---snI~vdn  192 (892)
T KOG2025|consen  161 ---ECPVVNLLKDLIQNDPSDEVRRAAL---SNISVDN  192 (892)
T ss_pred             ---cccHHHHHHHHHhcCCcHHHHHHHH---HhhccCc
Confidence               1124567788888889999998664   5555333

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=92.17  E-value=0.34  Score=44.76  Aligned_cols=123  Identities=22%  Similarity=0.241  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHcCCch---hHHHHHHhCCHHHHHHHHcC--------------CCCHHHHHHHHHHHHHhccCChhh
Q 041050          154 ANVRIHAVKVVANLAAEEA---NQEKIVEAGGLSSLLMLLRS--------------FEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~~~~---~~~~i~~~g~i~~L~~lL~~--------------~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      ..+|+.|.-.|.|+++.=+   .-+.|.- ..+.-|+...-.              .....-|+.|+.+|+.|+.. +.|
T Consensus        80 ~~lREnalV~laNisgqLdLs~~~e~I~~-PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~-e~N  157 (257)
T PF12031_consen   80 EQLRENALVTLANISGQLDLSDYPESIAR-PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI-ENN  157 (257)
T ss_pred             HHHhhcceEeeeeeeeeeecccCchHHHH-HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee-ccC
Confidence            4578888888888886211   1111111 112233333210              01234688999999999999 999


Q ss_pred             HHHHHhcCcHHH-------HHHHhhcCCCHHHHHHHHHHHHHHh-CCchh-HHHHHhcccHHHHHHhhcCC
Q 041050          217 QELIMAQGGISL-------LSTTAADAEDPQTLRMVAGAIANLC-GNDKL-QMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       217 ~~~i~~~g~i~~-------Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~-~~~i~~~g~l~~L~~lL~~~  278 (408)
                      .+.|..++..++       |++++...+++..++.++-.|.||| ++... +..-.+.+++..|+..+...
T Consensus       158 VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a  228 (257)
T PF12031_consen  158 VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA  228 (257)
T ss_pred             cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence            999999998764       4566667788899999999999999 44433 34556788999999988654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.99  E-value=4.5  Score=37.15  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHcCCchhHHHHHHhCC---HHHHHHHHcC-CCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHH
Q 041050          158 IHAVKVVANLAAEEANQEKIVEAGG---LSSLLMLLRS-FEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       158 ~~A~~aL~nLa~~~~~~~~i~~~g~---i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      ..|+..|.-+++.|+.+..+++.-.   +-+.+...++ +.-+..|..++++++.|..+ ++.....+..+..+|.++.+
T Consensus       118 cnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         118 CNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            4456666677789999888877643   2233333332 23466788899999999886 35566677788999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHHH-hhcCCCHHHHHHHHHHHHHhh
Q 041050          233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALLG-MVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~~-lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      +. ..++--...++.++.-+-+|+..-+.++..        ..+..++. +...+...+.+.+.++-..|+
T Consensus       198 me-~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs  267 (315)
T COG5209         198 ME-LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS  267 (315)
T ss_pred             HH-hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Confidence            74 444455666777777777888777766541        12333333 335567788889999888887

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=91.98  E-value=3.3  Score=46.38  Aligned_cols=192  Identities=21%  Similarity=0.235  Sum_probs=114.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-----CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN---  212 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-----~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~---  212 (408)
                      .+|-++.++..+..+||..|+.+|..+..     .+.+...+.+. .+|.|-.++.++...-+|..-+..|+.||..   
T Consensus       463 VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~r  541 (1431)
T KOG1240|consen  463 VLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYR  541 (1431)
T ss_pred             hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHH
Confidence            47999999999999999999999986643     23334444444 6788888887533344444444444444321   


Q ss_pred             ---------------ChhhH-----------HHHHhcCcHHHH-HHHhhcCCCHHHHHHHHHHHHHHh---C----Cc--
Q 041050          213 ---------------AEANQ-----------ELIMAQGGISLL-STTAADAEDPQTLRMVAGAIANLC---G----ND--  256 (408)
Q Consensus       213 ---------------~~~~~-----------~~i~~~g~i~~L-v~lL~~~~~~~v~~~a~~aL~nL~---~----~~--  256 (408)
                                     .+.+.           ..+..  ++... ..++ ..++|-|++..+..|+.||   +    |+  
T Consensus       542 Fle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~--~V~~~v~sLl-sd~~~~Vkr~Lle~i~~LC~FFGk~ksND~i  618 (1431)
T KOG1240|consen  542 FLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH--TVEQMVSSLL-SDSPPIVKRALLESIIPLCVFFGKEKSNDVI  618 (1431)
T ss_pred             HHHHHHHHHhcccccCcccccccccccchHHHHHHH--HHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHhhhcccccch
Confidence                           01110           00100  22222 3454 4455677777777777777   2    11  


Q ss_pred             -------------hhHHHHH---------------hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhh
Q 041050          257 -------------KLQMKLR---------------SEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR  308 (408)
Q Consensus       257 -------------~~~~~i~---------------~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i  308 (408)
                                   ..|..+.               ++..+|.|.+-|.++.+.|...|+++|.-|+..            
T Consensus       619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~------------  686 (1431)
T KOG1240|consen  619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKL------------  686 (1431)
T ss_pred             HHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHh------------
Confidence                         1122221               334456666666777788888888888888750            


Q ss_pred             hhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       309 ~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                          |.-. +..+.  ..+.....+|-+++.-||..++.+|...+..
T Consensus       687 ----~ll~-K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~  726 (1431)
T KOG1240|consen  687 ----GLLR-KPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ  726 (1431)
T ss_pred             ----cccc-hHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence                1100 11111  2445566677788999999999999887765

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=5.8  Score=42.37  Aligned_cols=66  Identities=18%  Similarity=0.076  Sum_probs=41.2

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc-cCCCHHHHHHH
Q 041050          268 IRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA-NNEAAPIRRHI  345 (408)
Q Consensus       268 l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL-~~~~~~v~~~a  345 (408)
                      ++.|+... ...+.+|++.|.-+|.-++.                 .         +...+|..+++| .+-++-||.-+
T Consensus       556 ir~lLh~aVsD~nDDVrRaAVialGFVl~-----------------~---------dp~~~~s~V~lLses~N~HVRyGa  609 (929)
T KOG2062|consen  556 IRRLLHVAVSDVNDDVRRAAVIALGFVLF-----------------R---------DPEQLPSTVSLLSESYNPHVRYGA  609 (929)
T ss_pred             HHHhhcccccccchHHHHHHHHHheeeEe-----------------c---------ChhhchHHHHHHhhhcChhhhhhH
Confidence            33344432 34556666666666665553                 2         234566777766 45588888888


Q ss_pred             HHHHHHHccCchhH
Q 041050          346 ELALCHLAQHEVNA  359 (408)
Q Consensus       346 ~~aL~~La~~~~~~  359 (408)
                      +.+|+-.|.+.-+.
T Consensus       610 A~ALGIaCAGtG~~  623 (929)
T KOG2062|consen  610 AMALGIACAGTGLK  623 (929)
T ss_pred             HHHHhhhhcCCCcH
Confidence            88888888775443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=91.07  E-value=4.2  Score=44.52  Aligned_cols=212  Identities=13%  Similarity=0.039  Sum_probs=119.8

Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHcC--CchhH------HHHHHhCCHHHHHHHHc-CCCCHHHHHHHHHHHHHhccCChhh
Q 041050          146 LSLLESEDANVRIHAVKVVANLAA--EEANQ------EKIVEAGGLSSLLMLLR-SFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       146 l~lL~s~~~~v~~~A~~aL~nLa~--~~~~~------~~i~~~g~i~~L~~lL~-~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      +..+..+-..+-..|+.+...+..  .+...      ...+.. .+...++.|. .+.|.+|+..|..+++.+-.+..+.
T Consensus       526 ~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~-m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~  604 (1233)
T KOG1824|consen  526 VAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKT-MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDF  604 (1233)
T ss_pred             HHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHH-HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhh
Confidence            333444556666666666665543  11111      111111 1233344443 3468899999999888776552211


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHH-HhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL-RSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i-~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      -... -...++.+++-|   .++.++-.|+.++..++..+-.-... +-..+++.|.+.++...-..+..+..++-.|..
T Consensus       605 l~~e-L~~~L~il~eRl---~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~  680 (1233)
T KOG1824|consen  605 LGNE-LPRTLPILLERL---GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVK  680 (1233)
T ss_pred             hhhh-hHHHHHHHHHHH---hchhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 112345555555   34567888999999998665332211 123456667777765544555555555555553


Q ss_pred             cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHH
Q 041050          296 CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRIS  375 (408)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll  375 (408)
                      +.                .......+.+ -++..+-.++...+-.+...|...|+.++......---+..-.++.++.++
T Consensus       681 ~~----------------~~~~~~~~~e-~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll  743 (1233)
T KOG1824|consen  681 NY----------------SDSIPAELLE-AVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLL  743 (1233)
T ss_pred             HH----------------hccccHHHHH-HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHh
Confidence            10                0111111121 234455556666677788899999999999877766666777888888888


Q ss_pred             hcCC
Q 041050          376 RDCS  379 (408)
Q Consensus       376 ~~~~  379 (408)
                      +++-
T Consensus       744 ~Spl  747 (1233)
T KOG1824|consen  744 RSPL  747 (1233)
T ss_pred             hCcc
Confidence            8753

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.02  E-value=2.7  Score=39.66  Aligned_cols=147  Identities=16%  Similarity=0.166  Sum_probs=93.2

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcCC---CCHHHHHHHHHHHHHhccCChhhH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRSF---EDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~~---~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ..+...+.+=..+-+--++..++-++.++.....+...++  ...+..++...   .++..+-.++.+++|+..+ +..+
T Consensus        66 ~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~~~  144 (268)
T PF08324_consen   66 ILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PPGR  144 (268)
T ss_dssp             HHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CCCH
T ss_pred             HHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-CccH
Confidence            4444555444444466677777766666666555554442  44555554332   4678888899999999998 8888


Q ss_pred             HHHHhcCc--HHHHHHHhhcCC---CHHHHHHHHHHHHHHhC----C---chhHHHHHhcccHHHHHHhh-c-CCCHHHH
Q 041050          218 ELIMAQGG--ISLLSTTAADAE---DPQTLRMVAGAIANLCG----N---DKLQMKLRSEGGIRALLGMV-R-CGHPDVL  283 (408)
Q Consensus       218 ~~i~~~g~--i~~Lv~lL~~~~---~~~v~~~a~~aL~nL~~----~---~~~~~~i~~~g~l~~L~~lL-~-~~~~~v~  283 (408)
                      ..+.....  +...+..+..+.   +..++..++..+.|++.    +   .+.+..     .+..+...+ . ..|+++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~-----ll~~i~~~~~~~~~d~Ea~  219 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSE-----LLSSIIEVLSREESDEEAL  219 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHH-----HHHHHHHHCHCCHTSHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-----HHHHHHHHhccccCCHHHH
Confidence            88887654  333333332322   67899999999999971    1   111111     244455533 3 3789999


Q ss_pred             HHHHHHHHHhhc
Q 041050          284 SQVARGIANFAK  295 (408)
Q Consensus       284 ~~a~~aL~nL~~  295 (408)
                      ..++-|+++|..
T Consensus       220 ~R~LvAlGtL~~  231 (268)
T PF08324_consen  220 YRLLVALGTLLS  231 (268)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999985

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=90.88  E-value=5.4  Score=41.73  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      ..++...+ ++...+..|+..+..... -|+.++.     ++..++.|+. +++..||..|+..|..+|.+.++...++ 
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcE-Ded~~iR~~aik~lp~~ck~~~~~v~kv-   97 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCE-DEDVQIRKQAIKGLPQLCKDNPEHVSKV-   97 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT--SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence            44455544 467788888888876655 6777654     4677889998 5789999999999999999867777776 


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIA  250 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~  250 (408)
                          +..|+.+| .++++.-...+-.+|.
T Consensus        98 ----aDvL~QlL-~tdd~~E~~~v~~sL~  121 (556)
T PF05918_consen   98 ----ADVLVQLL-QTDDPVELDAVKNSLM  121 (556)
T ss_dssp             ----HHHHHHHT-T---HHHHHHHHHHHH
T ss_pred             ----HHHHHHHH-hcccHHHHHHHHHHHH
Confidence                46788887 4566554444444443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.65  E-value=1.9  Score=45.86  Aligned_cols=124  Identities=20%  Similarity=0.190  Sum_probs=74.3

Q ss_pred             HHHHHHh-hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSL-LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~l-L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      |..|++. ++..+.+||+.|+-+|+-+.+.+..        .+|..+++|..+.++-||..|+.+|+--|.. ..++..|
T Consensus       556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAG-tG~~eAi  626 (929)
T KOG2062|consen  556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAG-TGLKEAI  626 (929)
T ss_pred             HHHhhcccccccchHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcC-CCcHHHH
Confidence            5556655 5678899999999999888774322        3677788888778899999999999888777 5444433


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHH
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVL  283 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~  283 (408)
                            ..|-.+. +++..=|+..|+-+++-+.  .++...-..  .|..+.+.+.+..++.+..
T Consensus       627 ------~lLepl~-~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv--~~frk~l~kvI~dKhEd~~  682 (929)
T KOG2062|consen  627 ------NLLEPLT-SDPVDFVRQGALIALAMIMIQQTEQLCPKV--NGFRKQLEKVINDKHEDGM  682 (929)
T ss_pred             ------HHHhhhh-cChHHHHHHHHHHHHHHHHHhcccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence                  2222232 3233235666666666553  333222222  1233345555544444443

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.51  E-value=5.4  Score=40.37  Aligned_cols=108  Identities=20%  Similarity=0.176  Sum_probs=75.7

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh-------------HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN-------------QELIMAQGGISLLSTTAADAEDPQTLRMVAGAI  249 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~-------------~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL  249 (408)
                      +..|+.+|.   ++++...|+.++.-|..+.+..             +++++.. .+|.|++-....++ ..+..-..+|
T Consensus       273 ~~~L~~lL~---~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~-~~k~~yL~AL  347 (415)
T PF12460_consen  273 LDKLLELLS---SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADD-EIKSNYLTAL  347 (415)
T ss_pred             HHHHHHHhC---ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcCh-hhHHHHHHHH
Confidence            667888887   3677888888888887773322             3333332 46777777644333 4777778889


Q ss_pred             HHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          250 ANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       250 ~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      +++..+-...-.+-+ ...+|.|++-|..+|++++..+..+|..+..
T Consensus       348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            988854433333323 3478888899999999999999999999985

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=90.50  E-value=7.5  Score=42.41  Aligned_cols=153  Identities=14%  Similarity=0.100  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh-hcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA-ADAEDPQTLRMVAGAIANLCGNDKLQMK  261 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL-~~~~~~~v~~~a~~aL~nL~~~~~~~~~  261 (408)
                      +..|+++... ...++....+.+|+..+.. +.--..-++....|.++.+. ..++||.+...+--++-.++....+..-
T Consensus       532 ld~L~qlas~-~s~evl~llmE~Ls~vv~~-dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~  609 (1005)
T KOG2274|consen  532 LDGLLQLASK-SSDEVLVLLMEALSSVVKL-DPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP  609 (1005)
T ss_pred             HHHHHHHccc-ccHHHHHHHHHHHHHHhcc-ChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc
Confidence            4556666653 4567888889999988887 43444445556677666554 4678888888888888777765555544


Q ss_pred             HHhcccHHHHHHhhcCCC----HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh-ccC
Q 041050          262 LRSEGGIRALLGMVRCGH----PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN-ANN  336 (408)
Q Consensus       262 i~~~g~l~~L~~lL~~~~----~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l-L~~  336 (408)
                      +.+ ..+|.+++.+..++    +.....++-.|..+.+.                +.++..+.++. -+.|++.+. +++
T Consensus       610 m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~----------------tp~pL~~~l~~-~~FpaVak~tlHs  671 (1005)
T KOG2274|consen  610 MQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN----------------TPSPLPNLLIC-YAFPAVAKITLHS  671 (1005)
T ss_pred             hHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhc----------------CCCCccHHHHH-HHhHHhHhheeec
Confidence            443 57888999997655    66667777777766652                22223333443 467777664 588


Q ss_pred             CCHHHHHHHHHHHHHHccC
Q 041050          337 EAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       337 ~~~~v~~~a~~aL~~La~~  355 (408)
                      ++..+-.++.-+|..+...
T Consensus       672 dD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  672 DDHETLQNATECLRALISV  690 (1005)
T ss_pred             CChHHHHhHHHHHHHHHhc
Confidence            8888988888888887665

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=90.30  E-value=13  Score=38.74  Aligned_cols=211  Identities=14%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             CCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCC----HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc
Q 041050          151 SEDANVRIHAVKVVAN-LAAEEANQEKIVEAGG----LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGG  225 (408)
Q Consensus       151 s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~----i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~  225 (408)
                      .++..+|-.|+.+|.+ +-+   .+..+..++-    ++..+..-. +++.+++..|.+.+..+-+-.-+.-+.+++.--
T Consensus       189 et~~avRLaaL~aL~dsl~f---v~~nf~~E~erNy~mqvvceatq-~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL  264 (858)
T COG5215         189 ETTSAVRLAALKALMDSLMF---VQGNFCYEEERNYFMQVVCEATQ-GNDEELQHAAFGCLNKIMMLYYKFMQSYMENAL  264 (858)
T ss_pred             CchHHHHHHHHHHHHHHHHH---HHHhhcchhhhchhheeeehhcc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888888876 322   1111111111    223333344 478899999999998776643444445555543


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-hhHHHH--------H--------hcccHHHHHHhhcC--C-----CHH
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLCGND-KLQMKL--------R--------SEGGIRALLGMVRC--G-----HPD  281 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-~~~~~i--------~--------~~g~l~~L~~lL~~--~-----~~~  281 (408)
                      ...+...+ .+.+..+...++..-..+|..+ +.-..+        .        -.+.+|.|+++|..  +     |-.
T Consensus       265 ~alt~~~m-ks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn  343 (858)
T COG5215         265 AALTGRFM-KSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWN  343 (858)
T ss_pred             HHHHHHHh-cCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            34444554 6677788888888777777211 110000        1        12367888888843  2     233


Q ss_pred             HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhH
Q 041050          282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNA  359 (408)
Q Consensus       282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~  359 (408)
                      +-..|..||.-++.                    ...+.|.+ .++..+-+.+++++..-|..++.+++.+..++  .+.
T Consensus       344 ~smaA~sCLqlfaq--------------------~~gd~i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~l  402 (858)
T COG5215         344 PSMAASSCLQLFAQ--------------------LKGDKIMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCL  402 (858)
T ss_pred             hhhhHHHHHHHHHH--------------------HhhhHhHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHH
Confidence            56667777777763                    11112222 26667777889999999999999999998874  344


Q ss_pred             HHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          360 REMISGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       360 ~~l~~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                      +.++. .++|-+..+..++.-......|.
T Consensus       403 T~~V~-qalp~i~n~m~D~~l~vk~ttAw  430 (858)
T COG5215         403 TKIVP-QALPGIENEMSDSCLWVKSTTAW  430 (858)
T ss_pred             HhhHH-hhhHHHHHhcccceeehhhHHHH
Confidence            55552 35666666666444333333333

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=90.01  E-value=9.5  Score=37.91  Aligned_cols=93  Identities=22%  Similarity=0.230  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHH-hCCchhHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMK  261 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL-~~~~~~~~~  261 (408)
                      +..++.=+.++.+..+|+.++--|+.-+.+ +..+..+...|.+..++..+...++..+...++.++..+ +.+...-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            445555555556778999999999999999 999999999999999999985544443444444444444 455555555


Q ss_pred             HHhcccHHHHHHhhc
Q 041050          262 LRSEGGIRALLGMVR  276 (408)
Q Consensus       262 i~~~g~l~~L~~lL~  276 (408)
                      +.+.+.+..++.++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            556677777788776

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.65  E-value=3.8  Score=43.49  Aligned_cols=128  Identities=16%  Similarity=0.107  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050          240 QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS  319 (408)
Q Consensus       240 ~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (408)
                      .+.+-++..+..|=..+..-+ ++ .|.+..|++-..+++..|+..++..|+-+..|                  ...+.
T Consensus        61 RIl~fla~fv~sl~q~d~e~D-lV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~------------------~~eid  120 (892)
T KOG2025|consen   61 RILSFLARFVESLPQLDKEED-LV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDE------------------NAEID  120 (892)
T ss_pred             HHHHHHHHHHHhhhccCchhh-HH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhcc------------------ccccC
Confidence            355555555555542221111 32 35666677777889999999999999999841                  11111


Q ss_pred             HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      .-+-.+....+..-+....+.||.+|+.+|+.+-.++.+-    +..++..+..+++..+.+.+|.+|.-.+
T Consensus       121 d~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de----e~~v~n~l~~liqnDpS~EVRRaaLsnI  188 (892)
T KOG2025|consen  121 DDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE----ECPVVNLLKDLIQNDPSDEVRRAALSNI  188 (892)
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCCcHHHHHHHHHhh
Confidence            1122356667777788889999999999999998543221    2335677888888777777888888433

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.36  E-value=5  Score=41.79  Aligned_cols=129  Identities=16%  Similarity=0.155  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHH
Q 041050          241 TLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS  319 (408)
Q Consensus       241 v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~  319 (408)
                      +.+-..+.+...- .+|+. ..++ .|.+..+++-+.+++..|+..++..|+-+..|-.+                 . .
T Consensus        67 il~fl~~f~~Y~~~~dpeg-~~~V-~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e-----------------I-D  126 (885)
T COG5218          67 ILSFLKRFFEYDMPDDPEG-EELV-AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE-----------------I-D  126 (885)
T ss_pred             HHHHHHHHHHhcCCCChhh-hHHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch-----------------H-H
Confidence            3434444444333 45555 2333 36677788888899999999999999998852111                 1 1


Q ss_pred             HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH-HHHhc
Q 041050          320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAH-RTLSS  393 (408)
Q Consensus       320 ~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~-~~L~~  393 (408)
                      ...-.|.+..|..-+-..++-||.+|+.+|+.+-..+.+-.    ......|+.+++....+.+|.+|. .+...
T Consensus       127 e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee----n~~~n~l~~~vqnDPS~EVRr~allni~vd  197 (885)
T COG5218         127 EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE----NRIVNLLKDIVQNDPSDEVRRLALLNISVD  197 (885)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH----HHHHHHHHHHHhcCcHHHHHHHHHHHeeeC
Confidence            12334777888888888899999999999999875533321    113446777787666667887777 44433

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=88.42  E-value=5.1  Score=43.75  Aligned_cols=154  Identities=12%  Similarity=0.061  Sum_probs=100.0

Q ss_pred             HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhc-CcHHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 041050          174 QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ-GGISLLSTTAADAEDPQTLRMVAGAIANL  252 (408)
Q Consensus       174 ~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL  252 (408)
                      +++++.. .+|.|++... ..+...+-.=..+|.++-.+-| -+..+-+. .-.|.|++.| +.+|+.++..+..++.-+
T Consensus       861 kQRfF~~-ivP~l~~~~~-t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~  936 (1030)
T KOG1967|consen  861 KQRFFCD-IVPILVSKFE-TAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPML  936 (1030)
T ss_pred             HHHHHHh-hHHHHHHHhc-cCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHH
Confidence            4555543 6899999888 4566667777778888777623 33332222 2356677777 678889988999988877


Q ss_pred             h-CCchhHHHHHhcccHHHHHHhhcCCC---HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH
Q 041050          253 C-GNDKLQMKLRSEGGIRALLGMVRCGH---PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP  328 (408)
Q Consensus       253 ~-~~~~~~~~i~~~g~l~~L~~lL~~~~---~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~  328 (408)
                      . ..+.....-.+ -.+|.++.+-.+++   --|+..|..+|..|+.                 ..|...-.-....++.
T Consensus       937 l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~-----------------~~P~~~l~~fr~~Vl~  998 (1030)
T KOG1967|consen  937 LTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTR-----------------RLPTKSLLSFRPLVLR  998 (1030)
T ss_pred             HHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc-----------------cCCCcccccccHHHHH
Confidence            6 33333332222 34566666665544   4577888899999885                 2222222233456888


Q ss_pred             HHHHhccCCCHHHHHHHHHHH
Q 041050          329 WIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       329 ~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                      .|++.|.++..-||++|+.+=
T Consensus       999 al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  999 ALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             HhhhccCcHHHHHHHHHHHHh
Confidence            999999888888899988653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=88.18  E-value=23  Score=37.54  Aligned_cols=160  Identities=13%  Similarity=0.092  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHHHh---cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHH
Q 041050          195 DETIRRVAAGAIANLAMNAEANQELIMA---QGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRAL  271 (408)
Q Consensus       195 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L  271 (408)
                      +.+++--|+.+|.-+..++..+-..+..   ...+..++..+.  -++.-...++++|+|+..++.+++.+...  ...+
T Consensus       557 p~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~--~~~an~ll~vR~L~N~f~~~~g~~~~~s~--~~~i  632 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN--ADPANQLLVVRCLANLFSNPAGRELFMSR--LESI  632 (745)
T ss_pred             CHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc--cchhHHHHHHHHHHHhccCHHHHHHHHHH--HHHH
Confidence            5566666777777666663322222221   223334444432  45677889999999999889998888764  3323


Q ss_pred             HHhh----cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhc----cC-CCHHHH
Q 041050          272 LGMV----RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNA----NN-EAAPIR  342 (408)
Q Consensus       272 ~~lL----~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL----~~-~~~~v~  342 (408)
                      ...+    ..++..++...+....|++.+    ..+         ++.       +.+..+.+...+    .. ++.+..
T Consensus       633 ~~~~~~~~s~~~knl~ia~atlaln~sv~----l~~---------~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~  692 (745)
T KOG0301|consen  633 LDPVIEASSLSNKNLQIALATLALNYSVL----LIQ---------DNE-------QLEGKEVLLSAISTLLEPVDDLEAI  692 (745)
T ss_pred             hhhhhhhhcccchhHHHHHHHHHHHHHHH----HHh---------ccc-------ccchHHHHHHHHHhhcccchhHHHH
Confidence            3222    234455665555555555531    000         111       123333332222    21 234455


Q ss_pred             HHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050          343 RHIELALCHLAQHEVNAREMISGGALWELVRISRDC  378 (408)
Q Consensus       343 ~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~  378 (408)
                      -....||++|+..+.....+...-.+..+..-+++.
T Consensus       693 yR~l~AlgtL~t~~~~~~~~A~~~~v~sia~~~~~~  728 (745)
T KOG0301|consen  693 YRLLVALGTLMTVDASVIQLAKNRSVDSIAKKLKEA  728 (745)
T ss_pred             HHHHHHHHhhccccHHHHHHHHhcCHHHHHHHHHHh
Confidence            667889999999999999998877788777766654

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.02  E-value=33  Score=36.02  Aligned_cols=106  Identities=21%  Similarity=0.265  Sum_probs=73.6

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      +|.+..++..+.+.+..+|..++..|+-++..-.-....+-.|.+.+|..-+- +..+.||..|+.+|+.+-.. ..+-+
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~-DRE~~VR~eAv~~L~~~Qe~-~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF-DREKAVRREAVKVLCYYQEM-ELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHhc-cCChH
Confidence            34566777778899999999999999988774333333444456777777766 35789999999999877654 33333


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~  253 (408)
                      ..+    ...|+.++...++.+|++.|   +.|+.
T Consensus       168 n~~----~n~l~~~vqnDPS~EVRr~a---llni~  195 (885)
T COG5218         168 NRI----VNLLKDIVQNDPSDEVRRLA---LLNIS  195 (885)
T ss_pred             HHH----HHHHHHHHhcCcHHHHHHHH---HHHee
Confidence            332    33667777777777888855   55665

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.46  E-value=2.1  Score=39.69  Aligned_cols=81  Identities=27%  Similarity=0.276  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHhCCH-------HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-HHhcCcH
Q 041050          155 NVRIHAVKVVANLAAEEANQEKIVEAGGL-------SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-IMAQGGI  226 (408)
Q Consensus       155 ~v~~~A~~aL~nLa~~~~~~~~i~~~g~i-------~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-i~~~g~i  226 (408)
                      .-|+.|+.+|+.|+-.+.|.+-+...+-.       ..|+.++...+++..|+.|+-.|.||+..+...... -.+.+.|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            46899999999999988887777666643       345666666678999999999999999985555544 4578899


Q ss_pred             HHHHHHhhc
Q 041050          227 SLLSTTAAD  235 (408)
Q Consensus       227 ~~Lv~lL~~  235 (408)
                      ..|+.++..
T Consensus       219 ~~Li~FiE~  227 (257)
T PF12031_consen  219 SHLIAFIED  227 (257)
T ss_pred             HHHHHHHHH
Confidence            999999843

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=87.22  E-value=34  Score=34.23  Aligned_cols=186  Identities=12%  Similarity=0.142  Sum_probs=116.0

Q ss_pred             HHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC------C-------------------CC--------HHHHHHHHHH
Q 041050          160 AVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS------F-------------------ED--------ETIRRVAAGA  205 (408)
Q Consensus       160 A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~------~-------------------~~--------~~v~~~A~~a  205 (408)
                      |+++|-.+.. .+..-..+.+.+|+..++..+..      .                   .+        ....+.-+.+
T Consensus         4 av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~lLk~   83 (379)
T PF06025_consen    4 AVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEENKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSLLKF   83 (379)
T ss_pred             HHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcccccccccccCHHHHHHHHHHHHH
Confidence            4555555554 44455566777788777666631      0                   00        1233334455


Q ss_pred             HHHhcc-C--ChhhHHHHHhcCcHH-HHHHHhhcCC--CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc-C
Q 041050          206 IANLAM-N--AEANQELIMAQGGIS-LLSTTAADAE--DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR-C  277 (408)
Q Consensus       206 L~nLa~-~--~~~~~~~i~~~g~i~-~Lv~lL~~~~--~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~-~  277 (408)
                      +..+.. .  ..+.-..+++.+.++ .|..++.+..  .+.+...++.++..+. .+|..-..+.+.|.++.++..+. .
T Consensus        84 l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~  163 (379)
T PF06025_consen   84 LSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAK  163 (379)
T ss_pred             HHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhcc
Confidence            555555 2  122333344534444 4445554332  3678999999999998 66777788889999999998776 3


Q ss_pred             ---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH-------HHHHHHHH
Q 041050          278 ---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA-------PIRRHIEL  347 (408)
Q Consensus       278 ---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~-------~v~~~a~~  347 (408)
                         ++.++....-.++..||                  -|..+.+.+.+.+.++.+.+...+.+.       ++-...-.
T Consensus       164 ~i~~s~e~l~~lP~~l~Aic------------------LN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~  225 (379)
T PF06025_consen  164 GILPSSEVLTSLPNVLSAIC------------------LNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN  225 (379)
T ss_pred             CCCCcHHHHHHHHHHHhHHh------------------cCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence               45666666667777777                  489999999999999999998876522       23333344


Q ss_pred             HHHHHccCchhHHHHH
Q 041050          348 ALCHLAQHEVNAREMI  363 (408)
Q Consensus       348 aL~~La~~~~~~~~l~  363 (408)
                      .+-.|..+.+..+..+
T Consensus       226 ~~DEL~RH~p~Lk~~i  241 (379)
T PF06025_consen  226 SFDELMRHHPSLKPDI  241 (379)
T ss_pred             HHHHHHccCHHHHHHH
Confidence            4455666644444433

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=87.17  E-value=15  Score=39.05  Aligned_cols=173  Identities=17%  Similarity=0.113  Sum_probs=92.5

Q ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHHhh---cCCCHHHHHHHHHHHHHHh----
Q 041050          182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAA---DAEDPQTLRMVAGAIANLC----  253 (408)
Q Consensus       182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~lL~---~~~~~~v~~~a~~aL~nL~----  253 (408)
                      ++..+..++.+..-. - ..|..+|..|.... ....+.      +..+..++.   ...++.+...++-+++.|.    
T Consensus       396 av~~i~~~I~~~~~~-~-~ea~~~l~~l~~~~~~Pt~e~------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c  467 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLT-D-DEAAQLLASLPFHVRRPTEEL------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC  467 (618)
T ss_dssp             HHHHHHHHHHTT-S--H-HHHHHHHHHHHHT-----HHH------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCC-H-HHHHHHHHHHHhhcCCCCHHH------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence            366667777642222 1 22445555554441 122222      233344432   1234566666666666664    


Q ss_pred             CCc------hhHHHHHhcccHHHHHHhhc----CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh
Q 041050          254 GND------KLQMKLRSEGGIRALLGMVR----CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE  323 (408)
Q Consensus       254 ~~~------~~~~~i~~~g~l~~L~~lL~----~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~  323 (408)
                      .+.      ......+....++.+...+.    ..+.+-+..++.||+|+..                            
T Consensus       468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------------------------  519 (618)
T PF01347_consen  468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------------------------  519 (618)
T ss_dssp             TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------------------------
T ss_pred             ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------------------------
Confidence            221      11112222345555665553    4566777788899999852                            


Q ss_pred             cCcHHHHHHhccCC---CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHH-HHHhccHhh
Q 041050          324 DGALPWIVQNANNE---AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS-REDIRSLAH-RTLSSSLTF  397 (408)
Q Consensus       324 ~g~l~~Lv~lL~~~---~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~A~-~~L~~~~~~  397 (408)
                      ...++.|.+++...   +..+|..|+++|..++...+..       +.+.|..+..... +.++|-+|. -++.++|+.
T Consensus       520 ~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~  591 (618)
T PF01347_consen  520 PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK-------VREILLPIFMNTTEDPEVRIAAYLILMRCNPSP  591 (618)
T ss_dssp             GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT---H
T ss_pred             chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH-------HHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCH
Confidence            24788888888766   7889999999999987764432       3566777776544 345888888 566666764

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.14  E-value=9  Score=41.95  Aligned_cols=181  Identities=16%  Similarity=0.129  Sum_probs=109.1

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-------------hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-------------NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA  250 (408)
Q Consensus       184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-------------~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~  250 (408)
                      ..++.+|+   ++.+-..++.++.-+..|++.             .+++++. ..+|.|+.... +.+...+..-..+|.
T Consensus       818 ~klld~Ls---~~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~-~ivP~l~~~~~-t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  818 EKLLDLLS---GPSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFC-DIVPILVSKFE-TAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHhcC---CccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHH-hhHHHHHHHhc-cCCccchhHHHHHHH
Confidence            34555555   234444555666655555432             2333333 36788888874 455566777778888


Q ss_pred             HHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH
Q 041050          251 NLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW  329 (408)
Q Consensus       251 nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~  329 (408)
                      ++-++-.-+..+=+ ...+|.|++-|..+|+.++-.+..++..+.. .+.                .....=. .-++|.
T Consensus       893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~-~~~----------------tL~t~~~-~Tlvp~  954 (1030)
T KOG1967|consen  893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT-ESE----------------TLQTEHL-STLVPY  954 (1030)
T ss_pred             HHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH-hcc----------------ccchHHH-hHHHHH
Confidence            88765444333322 3467778888899999999999999988874 111                1111111 136777


Q ss_pred             HHHhccCCC---HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          330 IVQNANNEA---APIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       330 Lv~lL~~~~---~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                      ++.+-.+.+   ..+|..|..+|..|+.. +...-.-.+-..+..|+..+.++-+ -+|+.|.
T Consensus       955 lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKR-lVR~eAv 1016 (1030)
T KOG1967|consen  955 LLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKR-LVRKEAV 1016 (1030)
T ss_pred             HHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHH-HHHHHHH
Confidence            777776654   56899999999999984 4332222344456666666663322 2555554

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=86.90  E-value=9.5  Score=27.49  Aligned_cols=59  Identities=31%  Similarity=0.481  Sum_probs=45.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050           22 EIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT   94 (408)
Q Consensus        22 ~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   94 (408)
                      +|..-|+-|+..+....+|+++.|...              ....++|++-..+...|+.++..|+..+.++.
T Consensus         1 elQsaL~~EirakQ~~~eEL~kvk~~n--------------~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen    1 ELQSALEAEIRAKQAIQEELTKVKSAN--------------LAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            366778999999999999998877663              23556777777888888888888888776654

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=86.59  E-value=14  Score=37.01  Aligned_cols=155  Identities=15%  Similarity=0.011  Sum_probs=97.0

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh---------cCCCHHHHHHHHHHHHHHh-
Q 041050          184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA---------DAEDPQTLRMVAGAIANLC-  253 (408)
Q Consensus       184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~---------~~~~~~v~~~a~~aL~nL~-  253 (408)
                      ..++.+|....+.+.+...+..+.-|+.+ ...-+-+...--+..|+.+..         ...|..+...+..+|+|+. 
T Consensus        48 e~i~~Vle~~~p~t~~v~~LetvrILSRd-k~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf  126 (532)
T KOG4464|consen   48 ERIFEVLENGEPLTHRVVCLETVRILSRD-KDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVF  126 (532)
T ss_pred             HHHHHHHhcCCCchhhhhHHHHHHHHhcc-ccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHh
Confidence            45778887666777888888999999998 433222222222233333321         1234578889999999999 


Q ss_pred             CCchhHHHHHhcccHHHHHHhhcC-----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHH-HhcCcH
Q 041050          254 GNDKLQMKLRSEGGIRALLGMVRC-----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLL-IEDGAL  327 (408)
Q Consensus       254 ~~~~~~~~i~~~g~l~~L~~lL~~-----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i-~~~g~l  327 (408)
                      .+...|+...+......+.+.+..     --.++...=.+.|.-++.                 -.++.|.++ .+.+++
T Consensus       127 ~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllta-----------------le~~~Rsql~~~l~Gl  189 (532)
T KOG4464|consen  127 HSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTA-----------------LETDHRSQLIAELLGL  189 (532)
T ss_pred             ccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHH-----------------hhHHHHHHHHHHhccc
Confidence            777888888887777777765521     122344444566666654                 334444444 466777


Q ss_pred             HHHHHhccCC---------------CHHHHHHHHHHHHHHccCc
Q 041050          328 PWIVQNANNE---------------AAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       328 ~~Lv~lL~~~---------------~~~v~~~a~~aL~~La~~~  356 (408)
                      +.+.+.+.+.               +.+...++..++.|++.+.
T Consensus       190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~  233 (532)
T KOG4464|consen  190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDS  233 (532)
T ss_pred             HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeecc
Confidence            7777766431               2345667888889988774

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=86.47  E-value=46  Score=34.94  Aligned_cols=67  Identities=27%  Similarity=0.276  Sum_probs=43.6

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050          144 KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA  213 (408)
Q Consensus       144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  213 (408)
                      .|-..|++.-+-+...+++++..++... .....+++ .+..|-.+|.+ .....|-.|+.+|..|++-.
T Consensus       268 fL~~wls~k~emV~lE~Ar~v~~~~~~n-v~~~~~~~-~vs~L~~fL~s-~rv~~rFsA~Riln~lam~~  334 (898)
T COG5240         268 FLNSWLSDKFEMVFLEAARAVCALSEEN-VGSQFVDQ-TVSSLRTFLKS-TRVVLRFSAMRILNQLAMKY  334 (898)
T ss_pred             HHHHHhcCcchhhhHHHHHHHHHHHHhc-cCHHHHHH-HHHHHHHHHhc-chHHHHHHHHHHHHHHHhhC
Confidence            3335555666778888888888877622 12222322 46677777774 46677778889999998864

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.30  E-value=9.1  Score=39.82  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=67.5

Q ss_pred             cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050          225 GISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQ  303 (408)
Q Consensus       225 ~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~  303 (408)
                      .+..|+..--++.+.++++.|+-+|.-+|.++.        ..+.-.+++| .+.++.|+.-++-+|.-.|.        
T Consensus       552 vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~shN~hVR~g~AvaLGiaca--------  615 (926)
T COG5116         552 VVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESHNFHVRAGVAVALGIACA--------  615 (926)
T ss_pred             hHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhccchhhhhhhHHHhhhhhc--------
Confidence            444555442244556899999999998884432        3345567777 57788899888888888775        


Q ss_pred             HHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          304 VRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       304 ~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                               |.-+.       -++..|-.++....+-||+.|+.++..+...
T Consensus       616 ---------g~G~~-------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q  651 (926)
T COG5116         616 ---------GTGDK-------VATDILEALMYDTNDFVRQSAMIAVGMILMQ  651 (926)
T ss_pred             ---------CCccH-------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh
Confidence                     32221       2455666777777888999999998886643

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.28  E-value=54  Score=35.52  Aligned_cols=25  Identities=16%  Similarity=0.143  Sum_probs=18.9

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          271 LLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       271 L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      +++.|.++|-++++.+......|+.
T Consensus       322 vLrvLss~dldvr~Ktldi~ldLvs  346 (948)
T KOG1058|consen  322 VLRVLSSPDLDVRSKTLDIALDLVS  346 (948)
T ss_pred             HHHHcCcccccHHHHHHHHHHhhhh
Confidence            5566778888888888877777763

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.88  E-value=5.8  Score=36.44  Aligned_cols=141  Identities=12%  Similarity=0.039  Sum_probs=91.1

Q ss_pred             HHHHHHHhccCChhhHHHHHhcCcHHHHHHHh----hcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhh
Q 041050          202 AAGAIANLAMNAEANQELIMAQGGISLLSTTA----ADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL----~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL  275 (408)
                      |+..|--++.+ |+.+..++++..--.|...|    +++..+.++..++++|+.|..|  +.....+.....+|..++++
T Consensus       120 aL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIm  198 (315)
T COG5209         120 ALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIM  198 (315)
T ss_pred             HHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHH
Confidence            55566677888 99999998886432222332    2344566888999999999944  45667777888999999999


Q ss_pred             cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh--------cCcHHHHHH-hccCCCHHHHHHHH
Q 041050          276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE--------DGALPWIVQ-NANNEAAPIRRHIE  346 (408)
Q Consensus       276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~--------~g~l~~Lv~-lL~~~~~~v~~~a~  346 (408)
                      ..++..-+.-++..+.-+-                  |++.+-+-+.+        ..++..++. +...+...+.+++.
T Consensus       199 e~gSElSktvaifI~qkil------------------~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~i  260 (315)
T COG5209         199 ELGSELSKTVAIFIFQKIL------------------GDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAI  260 (315)
T ss_pred             HhhhHHHHHHHHHHHHHHh------------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8776555555555555554                  33333322221        123333333 44556778888888


Q ss_pred             HHHHHHccCchhHHH
Q 041050          347 LALCHLAQHEVNARE  361 (408)
Q Consensus       347 ~aL~~La~~~~~~~~  361 (408)
                      .+-..|+.++..+..
T Consensus       261 RcYlRLsd~p~aR~l  275 (315)
T COG5209         261 RCYLRLSDKPHARAL  275 (315)
T ss_pred             HHheeecCCHhHHHH
Confidence            888888877655433

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.64  E-value=15  Score=39.42  Aligned_cols=209  Identities=13%  Similarity=0.144  Sum_probs=111.4

Q ss_pred             hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      +.|+..+...     ++++. -+|.+...|.+.+.-||.+|.-++..+-..-   ..++ ..+=..+-..|....|+.-+
T Consensus       120 LRFLckLkE~-----ELlep-l~p~IracleHrhsYVRrNAilaifsIyk~~---~~L~-pDapeLi~~fL~~e~DpsCk  189 (948)
T KOG1058|consen  120 LRFLCKLKEP-----ELLEP-LMPSIRACLEHRHSYVRRNAILAIFSIYKNF---EHLI-PDAPELIESFLLTEQDPSCK  189 (948)
T ss_pred             hhhhhhcCcH-----HHhhh-hHHHHHHHHhCcchhhhhhhheeehhHHhhh---hhhc-CChHHHHHHHHHhccCchhH
Confidence            4555555443     33333 2677778888999999999998888764320   1111 11222233345545677777


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR  276 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~  276 (408)
                      +.|.-.|...-..   .        ++..|.....  .+-++.++...+..|...| .+|..+...     ++.+..+|.
T Consensus       190 RNAFi~L~~~D~E---r--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~-----i~~i~~lL~  253 (948)
T KOG1058|consen  190 RNAFLMLFTTDPE---R--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARY-----IRCIYNLLS  253 (948)
T ss_pred             HHHHHHHHhcCHH---H--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHH-----HHHHHHHHh
Confidence            7775555444222   1        2222222221  1123455666666777666 455544443     445777777


Q ss_pred             CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhcc-CChhh-HHHH--------------HhcCcHHHHHHhccCCCHH
Q 041050          277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT-GVKSG-RSLL--------------IEDGALPWIVQNANNEAAP  340 (408)
Q Consensus       277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~-~~~~~-~~~i--------------~~~g~l~~Lv~lL~~~~~~  340 (408)
                      +.++.|..+|+++|-+|+ .++.+......+++.++ .-+++ ...|              +=.|.+-.++..+.+++-+
T Consensus       254 stssaV~fEaa~tlv~lS-~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dld  332 (948)
T KOG1058|consen  254 STSSAVIFEAAGTLVTLS-NDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLD  332 (948)
T ss_pred             cCCchhhhhhcceEEEcc-CCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCccccc
Confidence            767777777777777766 34433222211111100 00000 0000              0124455667788888888


Q ss_pred             HHHHHHHHHHHHccC
Q 041050          341 IRRHIELALCHLAQH  355 (408)
Q Consensus       341 v~~~a~~aL~~La~~  355 (408)
                      +|..+......|+..
T Consensus       333 vr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  333 VRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHHHHhhhhh
Confidence            988888777777665

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.42  E-value=79  Score=36.98  Aligned_cols=187  Identities=14%  Similarity=0.105  Sum_probs=96.4

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHh-ccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANL-AMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK  261 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nL-a~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~  261 (408)
                      ||.|...=. ++++.|+. |+.-|||. ..++....+... ...+.-|+.-+ .+..=.+|+.+|-||..|-....+-+.
T Consensus      1000 IPrLyRY~y-DP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~l-t~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen 1000 IPRLYRYQY-DPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNL-TSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             hHHHhhhcc-CCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhc-cchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            555555444 45677776 66667764 444222222222 22344444443 344557999999999999843333222


Q ss_pred             HHhcccHHHHHH----hhcCCCHHHHHHHH---HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHH--
Q 041050          262 LRSEGGIRALLG----MVRCGHPDVLSQVA---RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ--  332 (408)
Q Consensus       262 i~~~g~l~~L~~----lL~~~~~~v~~~a~---~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~--  332 (408)
                      . +  -++-+..    .+.+=...||..+-   .+|+.++.           .+|......++++.+-  .++|.|+.  
T Consensus      1076 ~-e--~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~v-----------r~~d~~~~~~~~~~l~--~iLPfLl~~g 1139 (1702)
T KOG0915|consen 1076 K-E--KLPELWEAAFRVMDDIKESVREAADKAARALSKLCV-----------RICDVTNGAKGKEALD--IILPFLLDEG 1139 (1702)
T ss_pred             H-H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhcccCCcccHHHHHH--HHHHHHhccC
Confidence            1 1  1222333    22222345665544   44444443           1122112233333332  46777665  


Q ss_pred             hccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050          333 NANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRT  390 (408)
Q Consensus       333 lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~  390 (408)
                      .+ +.-+++|+.+..++..|+......-.---...++.|.+....-++..+.-++.++
T Consensus      1140 im-s~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1140 IM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred             cc-cchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhh
Confidence            33 6788999999999999998743311111334566777766654444433333333

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.33  E-value=2.2  Score=46.24  Aligned_cols=123  Identities=18%  Similarity=0.294  Sum_probs=87.4

Q ss_pred             hhHHHHHHhCCHHHHHHHHcCCC-------CHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhh--
Q 041050          172 ANQEKIVEAGGLSSLLMLLRSFE-------DETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAA--  234 (408)
Q Consensus       172 ~~~~~i~~~g~i~~L~~lL~~~~-------~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~--  234 (408)
                      ...+-+.+.+++..++.+.....       .-+....|+++|+-+..- |..|..+...        .||..++....  
T Consensus       592 ~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~  670 (1516)
T KOG1832|consen  592 PAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGS  670 (1516)
T ss_pred             hHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccc
Confidence            34566778888999998886432       235778899999999988 9998887643        25555554421  


Q ss_pred             cC-CCHHHHHHHHHHHHHHh-CCchh-----------------------------------HHHHHhcccHHHHHHhhcC
Q 041050          235 DA-EDPQTLRMVAGAIANLC-GNDKL-----------------------------------QMKLRSEGGIRALLGMVRC  277 (408)
Q Consensus       235 ~~-~~~~v~~~a~~aL~nL~-~~~~~-----------------------------------~~~i~~~g~l~~L~~lL~~  277 (408)
                      .+ -||+++..|+.+|.|+. .-|.+                                   ...+..++||+.|++++..
T Consensus       671 ~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~  750 (1516)
T KOG1832|consen  671 NSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQY  750 (1516)
T ss_pred             ccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhc
Confidence            12 38999999999999986 33222                                   2345567899999999975


Q ss_pred             CCH-----HHHHHHHHHHHHhhc
Q 041050          278 GHP-----DVLSQVARGIANFAK  295 (408)
Q Consensus       278 ~~~-----~v~~~a~~aL~nL~~  295 (408)
                      ..|     .+++-||++|.-|++
T Consensus       751 k~P~t~aD~IRalAc~~L~GLaR  773 (1516)
T KOG1832|consen  751 KNPPTTADCIRALACRVLLGLAR  773 (1516)
T ss_pred             cCCCCcHHHHHHHHHHHHhcccc
Confidence            433     367788888888874

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=85.30  E-value=17  Score=39.90  Aligned_cols=180  Identities=12%  Similarity=0.089  Sum_probs=108.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050          149 LESEDANVRIHAVKVVANLAAEEANQEKIVEA-GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS  227 (408)
Q Consensus       149 L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~  227 (408)
                      +.+.+-.-|..|+..+.....++. ....-.. |-+-.++.....+.+..+...|+..|..|+.-....- .=...+..|
T Consensus       262 ~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~-~~~~~~v~p  339 (815)
T KOG1820|consen  262 MLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF-RKYAKNVFP  339 (815)
T ss_pred             hhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh-HHHHHhhcc
Confidence            346777778888888876655443 1111111 1244455555545577778878888888776522221 112234567


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI  307 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~  307 (408)
                      .++.-+. ...+.++..+..++-.++..-      .-....+.+..++++++|.++..+...+.-...            
T Consensus       340 ~lld~lk-ekk~~l~d~l~~~~d~~~ns~------~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~------------  400 (815)
T KOG1820|consen  340 SLLDRLK-EKKSELRDALLKALDAILNST------PLSKMSEAILEALKGKNPQIKGECLLLLDRKLR------------  400 (815)
T ss_pred             hHHHHhh-hccHHHHHHHHHHHHHHHhcc------cHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh------------
Confidence            7777763 344555555555554443211      112345668888999999999887766655543            


Q ss_pred             hhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          308 RCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       308 i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                           ..+ .....-.-.+++|.++....+.+.+||..|..++..+..
T Consensus       401 -----~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  401 -----KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             -----hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence                 111 222222234688899999999999999999988877654

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=85.16  E-value=6.4  Score=34.51  Aligned_cols=92  Identities=22%  Similarity=0.188  Sum_probs=58.7

Q ss_pred             eeeeeccCCCCCCCc------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--hhhcccccchhHhhHHHHHhHHHHH
Q 041050            2 HVLFYDTGFEPGASA------AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRL--GQYTESGSCRDAEMSKLHKTLEDET   73 (408)
Q Consensus         2 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   73 (408)
                      -||||.+.-.+..+.      ..++..++..+..-....+.++.|+..+.+.+  +++....+.+..|+..+..+|+.+.
T Consensus        57 kiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~  136 (169)
T PF07106_consen   57 KIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR  136 (169)
T ss_pred             EEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            378887766554433      44677777777777777888888888888875  3456666677777777777777655


Q ss_pred             HHHh-hhHHHHHHHHhhhhhh
Q 041050           74 LQKR-KLEEEIVILRSQLLQL   93 (408)
Q Consensus        74 ~~~~-~~~~~~~~l~~~l~~~   93 (408)
                      .... --.+++..+......+
T Consensus       137 ~~~~~vs~ee~~~~~~~~~~~  157 (169)
T PF07106_consen  137 SGSKPVSPEEKEKLEKEYKKW  157 (169)
T ss_pred             hCCCCCCHHHHHHHHHHHHHH
Confidence            3221 1234445444444333

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=85.08  E-value=43  Score=36.66  Aligned_cols=150  Identities=17%  Similarity=0.105  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHHHH
Q 041050          196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~L~  272 (408)
                      -.++....+.+..++.. .. . .++...--+.+..-+ .+..-.++..++..+.-++   +....+..     .++.++
T Consensus       493 wRvr~ail~~ip~la~q-~~-~-~~~~~~~~~l~~~~l-~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~-----~i~k~L  563 (759)
T KOG0211|consen  493 WRVRLAILEYIPQLALQ-LG-V-EFFDEKLAELLRTWL-PDHVYSIREAAARNLPALVETFGSEWARLE-----EIPKLL  563 (759)
T ss_pred             HHHHHHHHHHHHHHHHh-hh-h-HHhhHHHHHHHHhhh-hhhHHHHHHHHHHHhHHHHHHhCcchhHHH-----hhHHHH
Confidence            44555555666666554 21 1 222211111222222 2233467777777776666   32222222     234455


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      .+...++-.++...+.++..|+.               ..|.     .+.....+|.+..+.....++||-+++..|..+
T Consensus       564 ~~~~q~~y~~R~t~l~si~~la~---------------v~g~-----ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i  623 (759)
T KOG0211|consen  564 AMDLQDNYLVRMTTLFSIHELAE---------------VLGQ-----EITCEDLLPVFLDLVKDPVANVRINVAKHLPKI  623 (759)
T ss_pred             HHhcCcccchhhHHHHHHHHHHH---------------Hhcc-----HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHH
Confidence            55555556677777777776663               0122     234456788888899989999999999998887


Q ss_pred             ccCchhHHHHHhCCcHHHHHHHHh
Q 041050          353 AQHEVNAREMISGGALWELVRISR  376 (408)
Q Consensus       353 a~~~~~~~~l~~~g~i~~L~~ll~  376 (408)
                      ...-..  ...+.-..+.+..+..
T Consensus       624 ~~~L~~--~~~~~~v~pll~~L~~  645 (759)
T KOG0211|consen  624 LKLLDE--SVRDEEVLPLLETLSS  645 (759)
T ss_pred             Hhhcch--HHHHHHHHHHHHHhcc
Confidence            654211  2223334445555444

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.87  E-value=46  Score=36.21  Aligned_cols=134  Identities=11%  Similarity=0.122  Sum_probs=56.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVAN-LAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      ..|..+|++.....+..|..-+.+ ++.+....      .-.|..++-.. +.+.++++..---|...|...+ +-..+ 
T Consensus        38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS------~~Fp~VVKNVa-skn~EVKkLVyvYLlrYAEeqp-dLALL-  108 (968)
T KOG1060|consen   38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS------LLFPAVVKNVA-SKNIEVKKLVYVYLLRYAEEQP-DLALL-  108 (968)
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHhcCCcHH------HHHHHHHHHhh-ccCHHHHHHHHHHHHHHhhcCC-Cceee-
Confidence            445566666555555555443333 33333211      12344444444 2455555544333333333311 11000 


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                         .|..+=+-| .++++-++..|++++..+-.      -++.-=.+-++-+......+-|++.|+.||--|-.
T Consensus       109 ---SIntfQk~L-~DpN~LiRasALRvlSsIRv------p~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs  172 (968)
T KOG1060|consen  109 ---SINTFQKAL-KDPNQLIRASALRVLSSIRV------PMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS  172 (968)
T ss_pred             ---eHHHHHhhh-cCCcHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc
Confidence               122222333 34555566666665554421      11110011122233345556666666666666654

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=84.63  E-value=18  Score=41.93  Aligned_cols=133  Identities=10%  Similarity=0.109  Sum_probs=70.6

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRF  306 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~  306 (408)
                      .++..| ..+.+.+|..|..+|.++. .++...   .....-..+-+.+......|+..|...++-+..           
T Consensus       820 ~Il~~l-~e~~ialRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl-----------  884 (1692)
T KOG1020|consen  820 LILSVL-GENAIALRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVL-----------  884 (1692)
T ss_pred             HHHHHh-cCchHHHHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhh-----------
Confidence            334444 3445566666666666665 333221   111122223334445556666666666665554           


Q ss_pred             hhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhc-CCHHH-HH
Q 041050          307 IRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD-CSRED-IR  384 (408)
Q Consensus       307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~-~~~~~-~~  384 (408)
                            .+++....+.     ..+..-.......||+.+..+++.+|...+....+     +....++++. .++|. ++
T Consensus       885 ------~~~e~~~qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i-----~~~cakmlrRv~DEEg~I~  948 (1692)
T KOG1020|consen  885 ------SIPELIFQYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI-----VDMCAKMLRRVNDEEGNIK  948 (1692)
T ss_pred             ------ccHHHHHHHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH-----HHHHHHHHHHhccchhHHH
Confidence                  2333322222     24555566667789999999999999876554333     2334444432 23333 66


Q ss_pred             HHHHHHH
Q 041050          385 SLAHRTL  391 (408)
Q Consensus       385 ~~A~~~L  391 (408)
                      .++..++
T Consensus       949 kLv~etf  955 (1692)
T KOG1020|consen  949 KLVRETF  955 (1692)
T ss_pred             HHHHHHH
Confidence            6666554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=83.94  E-value=55  Score=37.32  Aligned_cols=208  Identities=14%  Similarity=0.127  Sum_probs=120.5

Q ss_pred             HHHHHHhhcC-CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC---Chh
Q 041050          142 LHKILSLLES-EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN---AEA  215 (408)
Q Consensus       142 v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~---~~~  215 (408)
                      ++-+.+.+.+ ...+.+..|+..|..|+.  +++.+-    .-.+|-++.++. +++..||..|+.+|..+-..   -+.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~-Ds~a~Vra~Al~Tlt~~L~~Vr~~~~  498 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLM-DSEADVRATALETLTELLALVRDIPP  498 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhc-CchHHHHHHHHHHHHHHHhhccCCCc
Confidence            4444455543 456778899999999887  444432    225899999998 46788999999888765332   133


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc----hhHHHHHhc-------------------------c
Q 041050          216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND----KLQMKLRSE-------------------------G  266 (408)
Q Consensus       216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~----~~~~~i~~~-------------------------g  266 (408)
                      .-..|+-.=.+|.|-.++.++...-++..-+..|+-||...    +..+.+...                         +
T Consensus       499 ~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~  578 (1431)
T KOG1240|consen  499 SDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT  578 (1431)
T ss_pred             ccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence            33344444467888888755444456666666666665221    111111111                         1


Q ss_pred             cHHHHHHhhcCCCHHHHHHHHHHHHHhhcc----chhhhhHHHhhhhhccCChhhH--HHHH---------------hcC
Q 041050          267 GIRALLGMVRCGHPDVLSQVARGIANFAKC----ESRAATQVRFIRCTATGVKSGR--SLLI---------------EDG  325 (408)
Q Consensus       267 ~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~----~~~~~~~~~~~i~~~~~~~~~~--~~i~---------------~~g  325 (408)
                      +=...+.++..+++-|++.-+..|.-||.-    .++.  -+.--+++|..+.+++  -++.               +.+
T Consensus       579 V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND--~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey  656 (1431)
T KOG1240|consen  579 VEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSND--VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY  656 (1431)
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhccccc--chHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence            112233455555566666555666666640    1111  0001144554444432  2222               446


Q ss_pred             cHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          326 ALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       326 ~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      .+|.|.+-+...+.-|...|..+|..|+...
T Consensus       657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~  687 (1431)
T KOG1240|consen  657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLG  687 (1431)
T ss_pred             HHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence            6777888888888889999999988888653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=83.60  E-value=17  Score=39.88  Aligned_cols=268  Identities=15%  Similarity=0.145  Sum_probs=140.0

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhc----CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCC
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLE----SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE  194 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~----s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~  194 (408)
                      ++|.++.+....+-. -++.+.|+..++-++.    .++..+.-.+...|+.|+........+++.|||.+|+.+=..  
T Consensus       329 ~~q~l~~lgey~e~l-pv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~kfa~~fv~~~gi~kll~vpr~--  405 (1516)
T KOG1832|consen  329 CIQCLEILGEYVEVL-PVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRKFAAMFVERRGILKLLAVPRV--  405 (1516)
T ss_pred             HHHHHHHHHhHHHHH-HHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhHHHHHHHHhhhhHHHhcCCCc--
Confidence            355555554444444 4556666777766553    345566677888899998888899999999999988876552  


Q ss_pred             CHHHHHHHHHHHHHhccCChhhHHHH------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccH
Q 041050          195 DETIRRVAAGAIANLAMNAEANQELI------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGI  268 (408)
Q Consensus       195 ~~~v~~~A~~aL~nLa~~~~~~~~~i------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l  268 (408)
                       ...-.....+|+.|+.. ...-+.+      +-..++..-+.+| ++.....+.+++-..+---.-...-..+-...++
T Consensus       406 -s~~~~g~s~cly~~~~~-q~~mervc~~p~~v~~~vv~~~~~l~-~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~l  482 (1516)
T KOG1832|consen  406 -SETFYGLSSCLYTIGSL-QGIMERVCALPLVVIHQVVKLAIELL-DCSQDQARKNSALFFAAAFVFRAILDAFDAQDSL  482 (1516)
T ss_pred             -hhhhhhHHHHHHHHhhh-hhHHHHHhhccHHHHHHHHHHHHHHH-hcchhhccchHHHHHHHHHHHHHHHHHHhhhhHH
Confidence             22333345667777766 4443332      2223444445565 4444444444332222111111222233334555


Q ss_pred             HHHHHhhcC--------CC---HHH--------HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH
Q 041050          269 RALLGMVRC--------GH---PDV--------LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW  329 (408)
Q Consensus       269 ~~L~~lL~~--------~~---~~v--------~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~  329 (408)
                      +.|+.+++.        .+   +++        -+..|.+++.--.    +-.        +.--+.++..-+..|.++.
T Consensus       483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~----AHl--------~Ikve~~~k~~~~r~~~g~  550 (1516)
T KOG1832|consen  483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFR----AHL--------LIKVESIRKSRISRGGVGS  550 (1516)
T ss_pred             HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHH----HHH--------HHHHHhhhhhhcccCCCCc
Confidence            556655532        11   111        2234444443211    000        0011233333444566666


Q ss_pred             HHHhccCC------CHHHHHHHHHHHHHHccC-c-------hhHHHHHhCCcHHHHHHHHhcCC-------HHHHHHHHH
Q 041050          330 IVQNANNE------AAPIRRHIELALCHLAQH-E-------VNAREMISGGALWELVRISRDCS-------REDIRSLAH  388 (408)
Q Consensus       330 Lv~lL~~~------~~~v~~~a~~aL~~La~~-~-------~~~~~l~~~g~i~~L~~ll~~~~-------~~~~~~~A~  388 (408)
                      .++.+...      .......++|.+-.+... +       +.+.-+.+.|++..++++...+.       +.+....|.
T Consensus       551 ~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al  630 (1516)
T KOG1832|consen  551 SMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYAL  630 (1516)
T ss_pred             cccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHH
Confidence            66655432      222333444444333322 1       23445668888888888776443       234445565


Q ss_pred             ---HHHhccHhhHHHHHhh
Q 041050          389 ---RTLSSSLTFRAEMRRL  404 (408)
Q Consensus       389 ---~~L~~~~~~~~~~~~~  404 (408)
                         .++.+.|..+.++...
T Consensus       631 ~vL~i~t~iP~iq~~La~~  649 (1516)
T KOG1832|consen  631 GVLHIVTSIPDIQKALAHA  649 (1516)
T ss_pred             hheeeeEecchHHHHHHHH
Confidence               6678888888887543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=82.99  E-value=4.4  Score=31.82  Aligned_cols=66  Identities=11%  Similarity=0.054  Sum_probs=50.5

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ..+..+ .++.+.++..++..|.+|..... ...+.-.+.+..+...++++|+-|--+|..+++.|+.
T Consensus         7 ~al~~L-~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~   72 (92)
T PF10363_consen    7 EALSDL-NDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD   72 (92)
T ss_pred             HHHHHc-cCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            344555 56778899999999999984444 2222335677788889999999999999999999986

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=82.98  E-value=51  Score=36.33  Aligned_cols=202  Identities=10%  Similarity=0.070  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHH
Q 041050          151 SEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLL  229 (408)
Q Consensus       151 s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~L  229 (408)
                      +..+.+-..+.+++...+.. ..+. .+... .+...+..+.-+.++.++..|+.+++..+.- ...+..  .-+.+..|
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~-~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-~vl~~~--~p~ild~L  535 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINP-QLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCKV-KVLLSL--QPMILDGL  535 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccch-hHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccCc-eecccc--chHHHHHH
Confidence            45566666677777655442 2222 11111 2444555555455666777677777666633 211111  12234556


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhh--cCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050          230 STTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMV--RCGHPDVLSQVARGIANFAKCESRAATQVRF  306 (408)
Q Consensus       230 v~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL--~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~  306 (408)
                      +.+. ...+.++......+|+-.| .|++. ..-++....|....+.  .++||.+...+--++-.++.   .       
T Consensus       536 ~qla-s~~s~evl~llmE~Ls~vv~~dpef-~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q---~-------  603 (1005)
T KOG2274|consen  536 LQLA-SKSSDEVLVLLMEALSSVVKLDPEF-AASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ---I-------  603 (1005)
T ss_pred             HHHc-ccccHHHHHHHHHHHHHHhccChhh-hhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH---H-------
Confidence            6665 3345578888889999998 45444 4445556777777765  47888777777666666653   0       


Q ss_pred             hhhhccCChhhHHHHHhcCcHHHHHHhccCCC----HHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcC
Q 041050          307 IRCTATGVKSGRSLLIEDGALPWIVQNANNEA----APIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDC  378 (408)
Q Consensus       307 ~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~----~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~  378 (408)
                              .++..-+ ....+|.++..+....    +....-+.-.|..+..+ ++-.....-.-+.|++.++.-++
T Consensus       604 --------~~~~g~m-~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHs  671 (1005)
T KOG2274|consen  604 --------AANYGPM-QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHS  671 (1005)
T ss_pred             --------HHhhcch-HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeec
Confidence                    0110011 1246777777776543    44555555566655554 22222222233455555554433

>PRK09169 hypothetical protein; Validated

Probab=82.87  E-value=52  Score=40.01  Aligned_cols=149  Identities=22%  Similarity=0.241  Sum_probs=86.5

Q ss_pred             CHHHHHHhhc-CCCHHHHHHHHHHHH-HHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          141 GLHKILSLLE-SEDANVRIHAVKVVA-NLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       141 ~v~~Ll~lL~-s~~~~v~~~A~~aL~-nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      .|..+++.|+ =++......++..|+ -|+.++.....+ +.-.+..+++-|+.-++....+.++..|+.-..+.+..+.
T Consensus       164 ~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al-~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~  242 (2316)
T PRK09169        164 SFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAM-DAQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQ  242 (2316)
T ss_pred             HHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhc-chHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHH
Confidence            4666676666 344444455555554 555666666554 4446777777777556666666677777655444255554


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHH-HhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIAN-LCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~n-L~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                      .+-.. .+..+++-|++=++.+..+.++..|+- |+..+..+..+--.+.-..|-.+-+-++....+.++..|+
T Consensus       243 ~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA  315 (2316)
T PRK09169        243 SLRAQ-EVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALA  315 (2316)
T ss_pred             hcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            44333 355666777766666666666666664 4466666666555555555555555555554444444433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=82.51  E-value=26  Score=37.55  Aligned_cols=130  Identities=14%  Similarity=0.112  Sum_probs=92.5

Q ss_pred             CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050          152 EDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS  230 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv  230 (408)
                      .++.++..|.-.|..+-. ...    ++ ...+|.|+..+..+++|.+|..|+-.++.++.......+..     ...|.
T Consensus       908 sd~~lq~aA~l~L~klMClS~~----fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~-----t~yLy  977 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFE----FC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEH-----THYLY  977 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHH----HH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHH-----HHHHH
Confidence            788899888888876532 222    22 22589999999978899999999988887655422222222     23455


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050          231 TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC  296 (408)
Q Consensus       231 ~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~  296 (408)
                      +-| .+++..|++.+..++.+|-.-    ..+-=.|-++.+...|..+|..+...|-..+..++..
T Consensus       978 rrL-~De~~~V~rtclmti~fLila----gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~K 1038 (1128)
T COG5098         978 RRL-GDEDADVRRTCLMTIHFLILA----GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKK 1038 (1128)
T ss_pred             HHh-cchhhHHHHHHHHHHHHHHHc----cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHhc
Confidence            555 457788999999999998521    1122246677788899999999999998888888863

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=82.12  E-value=19  Score=31.26  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=26.8

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA  215 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~  215 (408)
                      ++.|+.+|+++.+..+|+.++.+|+.|..-+|.
T Consensus        12 L~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~   44 (160)
T PF11865_consen   12 LDILLNILKTEQSQSIRREALRVLGILGALDPY   44 (160)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhhhccccCcH
Confidence            567788888777799999999999999887343

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=81.80  E-value=21  Score=31.18  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=52.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRSFEDETIRRVAAGAIANLAM  211 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~~~~~~v~~~A~~aL~nLa~  211 (408)
                      +..+.++|++.++.-|..++..+.-.+... ..+.+.+.++  +..|+.+|+..+++.+...++.+|..|..
T Consensus        27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~-~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~   97 (165)
T PF08167_consen   27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQC-SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFD   97 (165)
T ss_pred             HHHHHHHhCCCChhhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            566779999999999998888887766521 1455556655  78999999987888888888888876644

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.77  E-value=21  Score=36.50  Aligned_cols=140  Identities=16%  Similarity=0.073  Sum_probs=81.4

Q ss_pred             cCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHH
Q 041050          150 ESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA-QGGIS  227 (408)
Q Consensus       150 ~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~  227 (408)
                      .+++..+|.-|++.|+|.+.. |+-....... .+..++.-|.+..+.+|.-.++.+|.-+..- -.+.+.-.. ....-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~-~ldaii~gL~D~~~~~V~leam~~Lt~v~~~-~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTT-QLDAIIRGLYDDLNEEVQLEAMKCLTMVLEK-ASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHhHHH-HHHHHHHHHhcCCccHHHHHHHHHHHHHHHh-hhhcchhhhchhHHH
Confidence            367889999999999999985 4333333222 3555655555456677877777777665443 222221111 11122


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHh--cccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRS--EGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~--~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      .+..+. ++++++++..+......|+  ....++..+.+  .+.+..++-.+..++|.+-+ ||+.....
T Consensus       346 rlR~l~-~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~  413 (533)
T KOG2032|consen  346 RLRTLF-DSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRT  413 (533)
T ss_pred             HHHHHH-HhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHh
Confidence            444554 6788889888877777776  33344444432  23344466666777787765 44444333

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.76  E-value=38  Score=36.65  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=46.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHH
Q 041050          268 IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIEL  347 (408)
Q Consensus       268 l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~  347 (408)
                      +..+.+.+.-.+..++..|..+++++..                 +++..     ...+.-.|..++.+.+.++|..|..
T Consensus       468 ir~iyNRviLEn~ivRaaAv~alaKfg~-----------------~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf  525 (865)
T KOG1078|consen  468 IRFIYNRVILENAIVRAAAVSALAKFGA-----------------QDVVL-----LPSILVLLKRCLNDSDDEVRDRATF  525 (865)
T ss_pred             hHHHhhhhhhhhhhhHHHHHHHHHHHhc-----------------CCCCc-----cccHHHHHHHHhcCchHHHHHHHHH
Confidence            3445555556778888888899999874                 23222     2234456777888889999999999


Q ss_pred             HHHHHc
Q 041050          348 ALCHLA  353 (408)
Q Consensus       348 aL~~La  353 (408)
                      .+.++-
T Consensus       526 ~l~~l~  531 (865)
T KOG1078|consen  526 YLKNLE  531 (865)
T ss_pred             HHHHhh
Confidence            999887

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=81.15  E-value=19  Score=38.41  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=89.0

Q ss_pred             CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHH
Q 041050          182 GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK  261 (408)
Q Consensus       182 ~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~  261 (408)
                      .+|.|..-++ +.+..++..++..+-..+.. -+  -.++..-.+|.|..+........++..++-+++-+.   +..+.
T Consensus       390 IlplL~~S~~-~~~~~iQ~~~L~~lptv~e~-iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~---q~lD~  462 (700)
T KOG2137|consen  390 ILPLLYRSLE-DSDVQIQELALQILPTVAES-ID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI---QRLDK  462 (700)
T ss_pred             HHHHHHHHhc-CcchhhHHHHHHhhhHHHHh-cc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH---HHHHH
Confidence            4566666666 46778888888888777654 22  445555568888888777788889999999998887   12121


Q ss_pred             HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050          262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA  339 (408)
Q Consensus       262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~  339 (408)
                      ..-..-+.++..-.+..||.+...+.++..++..                 .+..+ ..+.-..++|.++.+...+.-
T Consensus       463 ~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~-----------------~~~~g-~ev~~~~VlPlli~ls~~~~L  522 (700)
T KOG2137|consen  463 AAVLDELLPILKCIKTRDPAIVMGFLRIYEALAL-----------------IIYSG-VEVMAENVLPLLIPLSVAPSL  522 (700)
T ss_pred             HHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHh-----------------hcccc-eeeehhhhhhhhhhhhhcccc
Confidence            1111223445555578899999988888888875                 33333 334455789988888876643

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=81.15  E-value=25  Score=31.39  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=61.7

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHH---HHHhhhHHHHHHHHhhhhhhhHH
Q 041050           20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDET---LQKRKLEEEIVILRSQLLQLTFE   96 (408)
Q Consensus        20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~~~~   96 (408)
                      -+.|+.-++|=-.-.+++.+|..+++.+++.....++-+..|+.++++.++..-   ..-+.+++++..|+.....+.-+
T Consensus         3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~   82 (193)
T PF14662_consen    3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEE   82 (193)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777788877888999999999999998777777788888998888887543   44567899999999988777543

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=80.70  E-value=23  Score=37.34  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHHcC----CchhH-HHHHHhCCHHHHHHHHcC---CCCHHHHHHHHHHHHHh
Q 041050          142 LHKILSLLES----EDANVRIHAVKVVANLAA----EEANQ-EKIVEAGGLSSLLMLLRS---FEDETIRRVAAGAIANL  209 (408)
Q Consensus       142 v~~Ll~lL~s----~~~~v~~~A~~aL~nLa~----~~~~~-~~i~~~g~i~~L~~lL~~---~~~~~v~~~A~~aL~nL  209 (408)
                      +..+..++++    .+..++..|+-+++++..    +.... ..++ ...++.|...|..   ..+...+..++.+|+|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            4555666664    356678888888887764    22111 1222 2256666666542   23555567789999999


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc--CCCHHHHH
Q 041050          210 AMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR--CGHPDVLS  284 (408)
Q Consensus       210 a~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~--~~~~~v~~  284 (408)
                      ...           ..++.|...+.  ...++.++..|+++|.+++ .++..-        -+.++.+..  ..++++|.
T Consensus       474 g~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRi  534 (574)
T smart00638      474 GHP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRM  534 (574)
T ss_pred             CCh-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHH
Confidence            886           24566666654  2234679999999999987 343322        223555553  56778877


Q ss_pred             HHHHHHHH
Q 041050          285 QVARGIAN  292 (408)
Q Consensus       285 ~a~~aL~n  292 (408)
                      .|...|..
T Consensus       535 aA~~~lm~  542 (574)
T smart00638      535 AAVLVLME  542 (574)
T ss_pred             HHHHHHHh
Confidence            66655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	408
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-29
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-25
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-24
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-20
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-19
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	9e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-29
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-27
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-25
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-17
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-28
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-24
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-18
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-16
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-12
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-27
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	5e-23
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-16
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	7e-09
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-25
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-20
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-07
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-24
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-23
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	8e-18
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-09
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-23
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	5e-18
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-14
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	6e-11
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	7e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-10
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-09
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	4e-22
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-20
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-22
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-20
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-20
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-19
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-15
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-19
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-16
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-18
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	8e-09
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-06
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-04
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-17
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	4e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-04
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	5e-05
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-04
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	7e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	1e-04
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	8e-04

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  117 bits (295), Expect = 5e-29
 Identities = 56/261 (21%), Positives = 96/261 (36%), Gaps = 10/261 (3%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFED-ETI 198
            L  ++ LL S+D NV   A  +++NL      N+  + + GG+ +L+  +    D E I
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDI 326

Query: 199 RRVAAGAIANLAM---NAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN 255
              A  A+ +L      AE  Q  +    G+ ++            ++   G I NL   
Sbjct: 327 TEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC 386

Query: 256 DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA---- 311
                 LR +G I  L+ ++   H D   + + G       E     ++      A    
Sbjct: 387 PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL 446

Query: 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL 371
                 R ++     +P  VQ   +    I+R     LC LAQ +  A  + + GA   L
Sbjct: 447 ARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL 506

Query: 372 VRISRDCSREDIRSLAHRTLS 392
             +      E + + A   L 
Sbjct: 507 TELLH-SRNEGVATYAAAVLF 526

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  110 bits (277), Expect = 1e-26
 Identities = 46/266 (17%), Positives = 94/266 (35%), Gaps = 24/266 (9%)

Query: 130 KAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLM 188
           +  +  +F+  G+  ++ +L S   +V  +A+  + NL   +E  +  +  AGGL  ++ 
Sbjct: 91  REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA 150

Query: 189 LLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA 248
           LL    +     +    +  LA   + ++ +I+A GG   L          + L   +  
Sbjct: 151 LLNK-TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRV 209

Query: 249 IANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
           +  L      +  +   GG++AL   +      ++      + N +   ++         
Sbjct: 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-------- 261

Query: 309 CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV-NAREMISGGA 367
                          +G L  +VQ   ++   +       L +L  +   N   +   G 
Sbjct: 262 ------------EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGG 309

Query: 368 LWELVRISRDCS-REDIRSLAHRTLS 392
           +  LVR       REDI   A   L 
Sbjct: 310 IEALVRTVLRAGDREDITEPAICALR 335

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  106 bits (266), Expect = 3e-25
 Identities = 47/230 (20%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 164 VANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQ 223
           V NL       +  +    +  L  LL   ED+ +   AA  +  L+    +   ++ + 
Sbjct: 2   VVNLINY--QDDAELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSP 58

Query: 224 GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVL 283
             +S +  T  +  D +T R  AG + NL  + +  + +   GGI AL+ M+      VL
Sbjct: 59  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVL 118

Query: 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRR 343
                 + N    +  A   VR                   G L  +V   N        
Sbjct: 119 FYAITTLHNLLLHQEGAKMAVR-----------------LAGGLQKMVALLNKTNVKFLA 161

Query: 344 HIELALCHLA-QHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392
                L  LA  ++ +   +++ G    LV I R  + E +     R L 
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  104 bits (261), Expect = 1e-24
 Identities = 43/250 (17%), Positives = 91/250 (36%), Gaps = 22/250 (8%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIV-EAGGLSSLLMLLRSFEDETIR 199
            + ++  LL  ED  V   A  +V  L+ +EA++  I+     +S+++  +++  D    
Sbjct: 18  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL 258
           R  AG + NL+ + E     I   GGI  L      +     L      + NL    +  
Sbjct: 78  RCTAGTLHNLSHHRE-GLLAIFKSGGIPAL-VKMLGSPVDSVLFYAITTLHNLLLHQEGA 135

Query: 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGR 318
           +M +R  GG++ ++ ++   +   L+     +                    A G +  +
Sbjct: 136 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----------------AYGNQESK 178

Query: 319 SLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD 377
            +++  G    +V          +       L  L+    N   ++  G +  L     D
Sbjct: 179 LIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD 238

Query: 378 CSREDIRSLA 387
            S+  +++  
Sbjct: 239 PSQRLVQNCL 248

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 90.2 bits (224), Expect = 9e-20
 Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 24/270 (8%)

Query: 141 GLHKILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           G   +++++ +     +     +V+  L+   +N+  IVEAGG+ +L + L     + + 
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLV 244

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL 258
           +     + NL+   +A  +    +G +  L      ++D   +   AG ++NL   N K 
Sbjct: 245 QNCLWTLRNLS---DAATKQEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 259 QMKLRSEGGIRALLGMVRCGHP--DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS 316
           +M +   GGI AL+  V       D+       + +       A                
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA------------- 347

Query: 317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH-LAQHEVNAREMISGGALWELVRIS 375
            ++ +     LP +V+  +  +        + L   LA    N   +   GA+  LV++ 
Sbjct: 348 -QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 406

Query: 376 RDCSREDIRSLAHRTLSSSLTFRAEMRRLR 405
               ++  R  +             M  + 
Sbjct: 407 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 436

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 88.3 bits (219), Expect = 3e-19
 Identities = 41/255 (16%), Positives = 80/255 (31%), Gaps = 13/255 (5%)

Query: 130 KAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLML 189
            +    + E  G+  +   L      +  + +  + NL+     Q      G L +L+ L
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 274

Query: 190 LRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI-SLLSTTAADAEDPQTLRMVAGA 248
           L S +D  +   AAG ++NL  N   N+ ++   GGI +L+ T     +          A
Sbjct: 275 LGS-DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333

Query: 249 IANLC----GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304
           + +L       +  Q  +R   G+  ++ ++       L +   G+             +
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 305 R---FIR--CTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA 359
           R    I             +                     I      AL  LA+   N 
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453

Query: 360 REMISGGALWELVRI 374
             +     +   V++
Sbjct: 454 IVIRGLNTIPLFVQL 468

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 81.0 bits (200), Expect = 9e-17
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 44/233 (18%)

Query: 146 LSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
             L   +  ++   A+  + +L +     E  Q  +    GL  ++ LL       + + 
Sbjct: 316 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 375

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLL---------------------STTAADAEDPQ 240
             G I NLA+    N   +  QG I  L                               +
Sbjct: 376 TVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434

Query: 241 TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300
            +    GA+  L  +   ++ +R    I   + ++     ++    A  +   A+ +   
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE-- 492

Query: 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353
                               +  +GA   + +  ++    +  +    L  ++
Sbjct: 493 ----------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  118 bits (296), Expect = 6e-29
 Identities = 57/272 (20%), Positives = 99/272 (36%), Gaps = 10/272 (3%)

Query: 130 KAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLM 188
            A   +   +  L  ++ LL S+D NV   A  +++NL      N+  + + GG+ +L+ 
Sbjct: 253 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 312

Query: 189 LLRSFED-ETIRRVAAGAIANLA---MNAEANQELIMAQGGISLLSTTAADAEDPQTLRM 244
            +    D E I   A  A+ +L      AE  Q  +    G+ ++            ++ 
Sbjct: 313 TVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 372

Query: 245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304
             G I NL         LR +G I  L+ ++   H D   + + G       E     ++
Sbjct: 373 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 432

Query: 305 RFIRCTA----TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR 360
                 A          R ++     +P  VQ   +    I+R     LC LAQ +  A 
Sbjct: 433 VEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 492

Query: 361 EMISGGALWELVRISRDCSREDIRSLAHRTLS 392
            + + GA   L  +      E + + A   L 
Sbjct: 493 AIEAEGATAPLTELLH-SRNEGVATYAAAVLF 523

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  113 bits (285), Expect = 1e-27
 Identities = 45/255 (17%), Positives = 89/255 (34%), Gaps = 24/255 (9%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           G+  ++ +L S   +V  +A+  + NL   +E  +  +  AGGL  ++ LL    +    
Sbjct: 99  GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL 157

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ 259
            +    +  LA   + ++ +I+A GG   L          + L   +  +  L      +
Sbjct: 158 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 217

Query: 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319
             +   GG++AL   +      ++      + N +                     +   
Sbjct: 218 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS--------------------DAATK 257

Query: 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI-SGGALWELVRISRDC 378
               +G L  +VQ   ++   +       L +L  +    + M+   G +  LVR     
Sbjct: 258 QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317

Query: 379 S-REDIRSLAHRTLS 392
             REDI   A   L 
Sbjct: 318 GDREDITEPAICALR 332

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  106 bits (265), Expect = 5e-25
 Identities = 51/293 (17%), Positives = 111/293 (37%), Gaps = 33/293 (11%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIV-EAGGLSSLLMLLRSFEDETIR 199
            + ++  LL  ED  V   A  +V  L+ +EA++  I+     +S+++  +++  D    
Sbjct: 15  AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL 258
           R  AG + NL+ + E     I   GGI  L      +     L      + NL    +  
Sbjct: 75  RCTAGTLHNLSHHRE-GLLAIFKSGGIPAL-VKMLGSPVDSVLFYAITTLHNLLLHQEGA 132

Query: 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC--ESRAA--------------- 301
           +M +R  GG++ ++ ++   +   L+     +   A    ES+                 
Sbjct: 133 KMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 302 -TQVRFIRCTATGV-------KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353
                 +  T + V        S +  ++E G +  +  +  + +  + ++    L +L+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252

Query: 354 QHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRI 406
                 ++    G L  LV++       ++ + A   L S+LT      ++ +
Sbjct: 253 DA--ATKQEGMEGLLGTLVQLLGSDD-INVVTCAAGIL-SNLTCNNYKNKMMV 301

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  102 bits (256), Expect = 8e-24
 Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 19/221 (8%)

Query: 173 NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT 232
             +  +    +  L  LL   ED+ +   AA  +  L+    +   ++ +   +S +  T
Sbjct: 6   QDDAELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN 292
             +  D +T R  AG + NL  + +  + +   GGI AL+ M+      VL      + N
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 293 FAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL 352
               +  A   VR                   G L  +V   N             L  L
Sbjct: 125 LLLHQEGAKMAVR-----------------LAGGLQKMVALLNKTNVKFLAITTDCLQIL 167

Query: 353 AQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS 392
           A  ++ +   +++ G    LV I R  + E +     R L 
Sbjct: 168 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 208

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 94.6 bits (235), Expect = 4e-21
 Identities = 46/270 (17%), Positives = 98/270 (36%), Gaps = 24/270 (8%)

Query: 141 GLHKILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           G   +++++ +     +     +V+  L+   +N+  IVEAGG+ +L + L     + + 
Sbjct: 183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-PSQRLV 241

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKL 258
           +     + NL+   +A  +    +G +  L      ++D   +   AG ++NL   N K 
Sbjct: 242 QNCLWTLRNLS---DAATKQEGMEGLLGTL-VQLLGSDDINVVTCAAGILSNLTCNNYKN 297

Query: 259 QMKLRSEGGIRALLGMVRCGHP--DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS 316
           +M +   GGI AL+  V       D+       + +       A                
Sbjct: 298 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA------------- 344

Query: 317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELAL-CHLAQHEVNAREMISGGALWELVRIS 375
            ++ +     LP +V+  +  +        + L  +LA    N   +   GA+  LV++ 
Sbjct: 345 -QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLL 403

Query: 376 RDCSREDIRSLAHRTLSSSLTFRAEMRRLR 405
               ++  R  +             M  + 
Sbjct: 404 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIV 433

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 81.5 bits (201), Expect = 8e-17
 Identities = 32/243 (13%), Positives = 73/243 (30%), Gaps = 42/243 (17%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAV-KVVANLAAEEANQEKIVEAGGLSSLLMLLR 191
              +    GL  ++ LL        I A   ++ NLA   AN   + E G +  L+ LL 
Sbjct: 345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 404

Query: 192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIAN 251
               +  +R  +              E I+                         GA+  
Sbjct: 405 R-AHQDTQRRTSMGGTQQQFVEGVRMEEIVEG---------------------CTGALHI 442

Query: 252 LCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA 311
           L  +   ++ +R    I   + ++     ++    A  +   A+ +              
Sbjct: 443 LARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-------------- 488

Query: 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV-NAREMISGGALWE 370
                    +  +GA   + +  ++    +  +    L  +++ +  + ++ +S      
Sbjct: 489 ----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSS 544

Query: 371 LVR 373
           L R
Sbjct: 545 LFR 547

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 66.1 bits (161), Expect = 8e-12
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 5/119 (4%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
            +   + LL S   N++  A  V+  LA ++   E I   G  + L  LL S  +E +  
Sbjct: 458 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS-RNEGVAT 516

Query: 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ 259
            AA  +  ++ +   + +  ++    S L       E           +      + L 
Sbjct: 517 YAAAVLFRMSEDKPQDYKKRLSVELTSSLF----RTEPMAWNETADLGLDIGAQGEPLG 571

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  115 bits (290), Expect = 4e-28
 Identities = 56/272 (20%), Positives = 101/272 (37%), Gaps = 10/272 (3%)

Query: 130 KAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLM 188
            A   +   +  L  ++ LL S+D NV   A  +++NL      N+  + + GG+ +L+ 
Sbjct: 389 DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVR 448

Query: 189 LLRSF-EDETIRRVAAGAIANLAM---NAEANQELIMAQGGISLLSTTAADAEDPQTLRM 244
            +    + E I   A  A+ +L     +AE  Q  +    G+ ++            ++ 
Sbjct: 449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508

Query: 245 VAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQV 304
             G I NL         LR +G I  L+ ++   H D   + + G       E     ++
Sbjct: 509 TVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEI 568

Query: 305 RFIRCTA----TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR 360
                 A          R ++     +P  VQ   +    I+R     LC LAQ +  A 
Sbjct: 569 VEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE 628

Query: 361 EMISGGALWELVRISRDCSREDIRSLAHRTLS 392
            + + GA   L  +    + E + + A   L 
Sbjct: 629 AIEAEGATAPLTELLHSRN-EGVATYAAAVLF 659

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  111 bits (279), Expect = 1e-26
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 24/255 (9%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR 199
           G+  ++++L S   +V  HA+  + NL   +E  +  +  AGGL  ++ LL    +    
Sbjct: 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL 293

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ 259
            +    +  LA   + ++ +I+A GG   L          + L   +  +  L      +
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNK 353

Query: 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319
             +   GG++AL   +      ++      + N +   ++                    
Sbjct: 354 PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ------------------- 394

Query: 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV-NAREMISGGALWELVR-ISRD 377
               +G L  +VQ   ++   +       L +L  +   N   +   G +  LVR + R 
Sbjct: 395 -EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 453

Query: 378 CSREDIRSLAHRTLS 392
             REDI   A   L 
Sbjct: 454 GDREDITEPAICALR 468

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  103 bits (257), Expect = 7e-24
 Identities = 48/301 (15%), Positives = 98/301 (32%), Gaps = 23/301 (7%)

Query: 97  ADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANV 156
             + ++   +         +D       +   + A   +  ++           +   NV
Sbjct: 62  LYEWEQGFNQSFNQEQVADIDGQYAMTRAQRVRAAMFPETLDEGMQIPSTQFDSAHPTNV 121

Query: 157 R--IHAVKVVANLAAEEAN--QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN 212
           +      +++ +      N   +  +    +  L  LL   ED+ +   AA  +  L+  
Sbjct: 122 QRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKK 180

Query: 213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALL 272
             +   ++ +   +S +  T  +  D +T R  +G + NL  + +  + +   GGI AL+
Sbjct: 181 EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV 240

Query: 273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ 332
            M+      VL      + N    +  A   VR                   G L  +V 
Sbjct: 241 NMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVR-----------------LAGGLQKMVA 283

Query: 333 NANNEAAPIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391
             N             L  LA  ++ +   +++ G    LV I R  + E +     R L
Sbjct: 284 LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVL 343

Query: 392 S 392
            
Sbjct: 344 K 344

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 85.5 bits (211), Expect = 4e-18
 Identities = 32/256 (12%), Positives = 77/256 (30%), Gaps = 45/256 (17%)

Query: 146 LSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
             L   +  ++   A+  + +L +     E  Q  +    GL  ++ LL       + + 
Sbjct: 449 TVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKA 508

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLL---------------------STTAADAEDPQ 240
             G I NLA+    N   +  QG I  L                               +
Sbjct: 509 TVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 567

Query: 241 TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300
            +    GA+  L  +   ++ +R    I   + ++     ++    A  +   A+ +   
Sbjct: 568 IVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--- 624

Query: 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV-NA 359
                               +  +GA   + +  ++    +  +    L  +++ +  + 
Sbjct: 625 ---------------EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDY 669

Query: 360 REMISGGALWELVRIS 375
           ++ +S      L R  
Sbjct: 670 KKRLSVELTSSLFRTE 685

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 79.3 bits (195), Expect = 5e-16
 Identities = 35/180 (19%), Positives = 59/180 (32%), Gaps = 24/180 (13%)

Query: 138 EQVGLHKILSLLESEDANVRIHAVK-VVANLAAEEANQEKIVEAGGLSSLLMLLRS---- 192
              GL  ++ LL        I A   ++ NLA   AN   + E G +  L+ LL      
Sbjct: 486 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 545

Query: 193 -----------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAAD 235
                               E I     GA+  LA +   N+ +I     I L       
Sbjct: 546 TQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIH-NRIVIRGLNTIPLFVQLLYS 604

Query: 236 AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295
                  R+ AG +  L  + +    + +EG    L  ++   +  V +  A  +   ++
Sbjct: 605 -PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSE 663

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
            +   + LL S   N++  A  V+  LA ++   E I   G  + L  LL S  +E +  
Sbjct: 594 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS-RNEGVAT 652

Query: 201 VAAGAIANLAMNAEANQELIMAQGGISLLS 230
            AA  +  ++ +   + +  ++    S L 
Sbjct: 653 YAAAVLFRMSEDKPQDYKKRLSVELTSSLF 682

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  106 bits (268), Expect = 6e-27
 Identities = 47/226 (20%), Positives = 99/226 (43%), Gaps = 21/226 (9%)

Query: 132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLL 190
            I  + +   L  ++ LL S +  +   A+  ++N+A+    Q + +++AG L +L+ LL
Sbjct: 46  QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 105

Query: 191 RSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250
            S  +E I + A  A++N+A       + ++  G +  L    +   + Q L+    A++
Sbjct: 106 SS-PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS 163

Query: 251 NLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRC 309
           N+  G ++    +   G + AL+ ++   +  +L +    ++N A               
Sbjct: 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-------------- 209

Query: 310 TATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355
              G    +  + E GAL  + Q  ++E   I++  + AL  L  H
Sbjct: 210 ---GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 96.2 bits (240), Expect = 5e-23
 Identities = 50/251 (19%), Positives = 108/251 (43%), Gaps = 23/251 (9%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA 203
           +   L S+D   ++ A +  + + ++     + +++AG L +L+ LL S  +E I + A 
Sbjct: 17  MTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEAL 75

Query: 204 GAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKL 262
            A++N+A       + ++  G +  L      + + Q L+    A++N+  G ++    +
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 263 RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI 322
              G + AL+ ++   +  +L +    ++N A                  G       +I
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIAS-----------------GGNEQIQAVI 177

Query: 323 EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMIS-GGALWELVRISRDCSRE 381
           + GALP +VQ  ++    I +    AL ++A      ++ +   GAL +L ++    + E
Sbjct: 178 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-E 236

Query: 382 DIRSLAHRTLS 392
            I+  A   L 
Sbjct: 237 KIQKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 38/217 (17%), Positives = 81/217 (37%), Gaps = 29/217 (13%)

Query: 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI---- 226
             +         L  +   L S +D   +  A    + +  +     + ++  G +    
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNS-DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALV 60

Query: 227 SLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQ 285
            LLS+      + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +
Sbjct: 61  QLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 286 VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345
               ++N A                  G       +I+ GALP +VQ  ++    I +  
Sbjct: 116 ALWALSNIAS-----------------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

Query: 346 ELALCHLAQHEV-NAREMISGGALWELVRISRDCSRE 381
             AL ++A       + +I  GAL  LV++    + +
Sbjct: 159 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ 195

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSL 186
           G    I  + +   L  ++ LL S +  +   A+  ++N+A+     ++ + EAG L  L
Sbjct: 168 GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKL 227

Query: 187 LMLLRSFEDETIRRVAAGAIANLAMN 212
             L    E+E I++ A  A+  L  +
Sbjct: 228 EQLQSH-ENEKIQKEAQEALEKLQSH 252

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  104 bits (260), Expect = 1e-25
 Identities = 40/168 (23%), Positives = 69/168 (41%), Gaps = 4/168 (2%)

Query: 141 GLHKILS-LLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETI 198
           G+H ++   LE+  A +R  A +++   +    A QE+++  G L  LL LL     +T+
Sbjct: 82  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK- 257
           R  A  AI+ L    EA     +   G S+L   A   +  +     A  + NL      
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLM-RAMQQQVQKLKVKSAFLLQNLLVGHPE 200

Query: 258 LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
            +  L S G ++ L+ +VR  H      V   + +      +   + R
Sbjct: 201 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR 248

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 89.7 bits (222), Expect = 2e-20
 Identities = 36/232 (15%), Positives = 68/232 (29%), Gaps = 18/232 (7%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS 192
             ++  Q          ++ D   R  A++++A+L     N     +  G+  L+     
Sbjct: 33  CLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE 92

Query: 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL 252
                +R  AA  I   + N  A QE ++  G +  L                  AI+ L
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 152

Query: 253 C-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA 311
               +   ++     G   L+  ++     +  + A  + N                   
Sbjct: 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP------------- 199

Query: 312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI 363
                 +  L   G +  +V     E +P   H+  ALC L           
Sbjct: 200 ----EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 50.0 bits (119), Expect = 5e-07
 Identities = 13/94 (13%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSL 186
            Q+A + +     G   ++  ++ +   +++ +  ++ NL      ++  +   G +  L
Sbjct: 155 EQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQL 214

Query: 187 LMLLRSFEDETIRRVAAGAIANLAMNAEANQELI 220
           + L+R+ E         GA+ +L  +        
Sbjct: 215 VALVRT-EHSPFHEHVLGALCSLVTDFPQGVREC 247

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 32/161 (19%), Positives = 73/161 (45%), Gaps = 12/161 (7%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIR 199
            L  ++ LL S +  +   A+  ++N+A+    Q + +++AG L +L+ LL S  +E I 
Sbjct: 55  ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQIL 113

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGI----SLLSTTAADAEDPQTLRMVAGAIANLC-G 254
           + A  A++N+A       + ++  G +     LLS+      + Q L+    A++N+  G
Sbjct: 114 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-----PNEQILQEALWALSNIASG 168

Query: 255 NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK 295
            ++ +  ++  G +  L  +    +  +  +    +     
Sbjct: 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 95.8 bits (239), Expect = 3e-23
 Identities = 43/213 (20%), Positives = 92/213 (43%), Gaps = 21/213 (9%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA 203
           ++  L S D      A++ ++ +A+      + +++AG L +L+ LL S  +E I + A 
Sbjct: 17  MVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEAL 75

Query: 204 GAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKL 262
            A++N+A       + ++  G +  L      + + Q L+    A++N+  G ++    +
Sbjct: 76  WALSNIASGGNEQIQAVIDAGALPAL-VQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134

Query: 263 RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI 322
              G + AL+ ++   +  +L +    ++N A                  G    +  + 
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIAS-----------------GGNEQKQAVK 177

Query: 323 EDGALPWIVQNANNEAAPIRRHIELALCHLAQH 355
           E GAL  + Q  ++E   I++  + AL  L  H
Sbjct: 178 EAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 80.4 bits (199), Expect = 8e-18
 Identities = 41/228 (17%), Positives = 87/228 (38%), Gaps = 30/228 (13%)

Query: 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI---- 226
             +         L  ++  L S  D+   + A   ++ +A       + ++  G +    
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNS-PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 227 SLLSTTAADAEDPQTLRMVAGAIANL-CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQ 285
            LLS+      + Q L+    A++N+  G ++    +   G + AL+ ++   +  +L +
Sbjct: 61  QLLSS-----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 115

Query: 286 VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI 345
               ++N A                  G       +I+ GALP +VQ  ++    I +  
Sbjct: 116 ALWALSNIAS-----------------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 158

Query: 346 ELALCHLAQHEVNAREMI-SGGALWELVRISRDCSREDIRSLAHRTLS 392
             AL ++A      ++ +   GAL +L ++    + E I+  A   L 
Sbjct: 159 LWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN-EKIQKEAQEALE 205

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 55.3 bits (134), Expect = 4e-09
 Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 2/81 (2%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLR 191
           I  + +   L  ++ LL S +  +   A+  ++N+A      ++ + EAG L  L  L  
Sbjct: 131 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190

Query: 192 SFEDETIRRVAAGAIANLAMN 212
             E+E I++ A  A+  L  +
Sbjct: 191 H-ENEKIQKEAQEALEKLQSH 210

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 99.6 bits (248), Expect = 4e-23
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 21/263 (7%)

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSL 186
           G       + +   +   + LL SE  +V+  AV  + N+A +     + +++   L  L
Sbjct: 95  GNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPL 154

Query: 187 LMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVA 246
           L L       T+ R A  A++NL        E       +++LS       D   L    
Sbjct: 155 LQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL-LFVSDTDVLADAC 213

Query: 247 GAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
            A++ L  G +     +   G  R L+ ++      V+S   R + N             
Sbjct: 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI------------ 261

Query: 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMIS 364
                 TG      +++   AL  ++   ++    I++     + ++        + +I 
Sbjct: 262 -----VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID 316

Query: 365 GGALWELVRISRDCSREDIRSLA 387
                 L+ I +       +  A
Sbjct: 317 ANIFPALISILQTAEFRTRKEAA 339

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 84.6 bits (209), Expect = 4e-18
 Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 13/202 (6%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIR 199
              +++ LL   D  V   A++ V N+   +  Q + I+    L SLL LL S   E+I+
Sbjct: 235 VCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS-PKESIK 293

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDK 257
           + A   I+N+     A  + ++       L +    A + +T +  A AI N    G+ +
Sbjct: 294 KEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAE 352

Query: 258 LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG 317
               L   G I+ L  ++      ++     G+ N  +   + A      +   TG+   
Sbjct: 353 QIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEA------KRNGTGINPY 406

Query: 318 RSLLIEDGALPWIV--QNANNE 337
            +L+ E   L  I   Q+  N+
Sbjct: 407 CALIEEAYGLDKIEFLQSHENQ 428

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 84.6 bits (209), Expect = 5e-18
 Identities = 34/261 (13%), Positives = 84/261 (32%), Gaps = 25/261 (9%)

Query: 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAAEEAN---QEKIVEAGGLSSLLMLLRSFE 194
             V    ++ ++ S+    ++ A +    L ++E N    E I   G ++  +  L+  E
Sbjct: 18  GGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKE 77

Query: 195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG 254
           + T++  +A  + N+A        +++  G + +       +E          A+ N+ G
Sbjct: 78  NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF-IELLSSEFEDVQEQAVWALGNIAG 136

Query: 255 -NDKLQMKLRSEGGIRALLGMVRCGHP-DVLSQVARGIANFAKCESRAATQVRFIRCTAT 312
            +   +  +     +  LL +    +   +       ++N  + +S      +       
Sbjct: 137 DSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK------- 189

Query: 313 GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI-SGGALWEL 371
                         L  +          +      AL +L+    +  + +   G    L
Sbjct: 190 ----------VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

Query: 372 VRISRDCSREDIRSLAHRTLS 392
           V +        + S A R + 
Sbjct: 240 VELLMHND-YKVVSPALRAVG 259

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 73.8 bits (181), Expect = 2e-14
 Identities = 32/216 (14%), Positives = 66/216 (30%), Gaps = 23/216 (10%)

Query: 164 VANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN--QELIM 221
           +    A+  N E        S ++ ++ S +    +  A      L          E+I 
Sbjct: 3   MGFHEAQINNMEMAPGGVITSDMIEMIFS-KSPEQQLSATQKFRKLLSKEPNPPIDEVIS 61

Query: 222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHP 280
             G ++         E+       A  + N+  GN      +   G +   + ++     
Sbjct: 62  TPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE 121

Query: 281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAP 340
           DV  Q    + N A   +                   R  +++   LP ++Q  + +   
Sbjct: 122 DVQEQAVWALGNIAGDSTMC-----------------RDYVLDCNILPPLLQLFSKQNRL 164

Query: 341 -IRRHIELALCHLAQHEVNAREMIS-GGALWELVRI 374
            + R+   AL +L + +    E       L  L  +
Sbjct: 165 TMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 63.0 bits (153), Expect = 6e-11
 Identities = 26/144 (18%), Positives = 55/144 (38%), Gaps = 2/144 (1%)

Query: 136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFE 194
           +     L  +L LL S   +++  A   ++N+ A    Q + +++A    +L+ +L++ E
Sbjct: 272 ILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAE 331

Query: 195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG 254
               R+ AA AI N      A Q   + + G            D + +++    + N+  
Sbjct: 332 FR-TRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390

Query: 255 NDKLQMKLRSEGGIRALLGMVRCG 278
             + + K    G       +    
Sbjct: 391 LGEQEAKRNGTGINPYCALIEEAY 414

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 99.6 bits (247), Expect = 7e-23
 Identities = 41/248 (16%), Positives = 86/248 (34%), Gaps = 7/248 (2%)

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSL 186
            +  P    + Q  L +++++L      V+ +A   + +L    +  +  + +  G+  L
Sbjct: 36  RKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVL 95

Query: 187 LMLLRSFEDETIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAADAEDPQTLRMV 245
           + LL     + +   A GA+ N++    + N+  I    G+  L      A D     ++
Sbjct: 96  VGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVI 154

Query: 246 AGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
            G + NL  +D ++M++           ++                   + ES       
Sbjct: 155 TGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG 214

Query: 306 FIRCTATGVKSGRSLLIEDG----ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNARE 361
            +R  ++     R  L E      AL +IVQ    +     + +E  +C L         
Sbjct: 215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHR 274

Query: 362 MISGGALW 369
            I     +
Sbjct: 275 EIPQAERY 282

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.1 bits (147), Expect = 2e-10
 Identities = 28/195 (14%), Positives = 64/195 (32%), Gaps = 17/195 (8%)

Query: 168 AAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN----AEANQELIMAQ 223
            +     E + +   +   + LL+  +   I   +AGAI NL           +  +  +
Sbjct: 295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE 354

Query: 224 GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVL 283
             +S ++      E  + ++  +GA+ NL  + + + +L  +  I  L+  +  G  +  
Sbjct: 355 KALSAIA-DLLTNEHERVVKAASGALRNLAVDARNK-ELIGKHAIPNLVKNLPGGQQNSS 412

Query: 284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ--NANNEAAPI 341
              +                +  I             L E   +  +V    + N +   
Sbjct: 413 WNFSEDTVISI---------LNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKE 463

Query: 342 RRHIELALCHLAQHE 356
            R   L L  +  ++
Sbjct: 464 VRAAALVLQTIWGYK 478

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 61.1 bits (147), Expect = 3e-10
 Identities = 44/261 (16%), Positives = 92/261 (35%), Gaps = 37/261 (14%)

Query: 161 VKVVANLAAEEANQEKIVE--AGGLSSLLMLLRS--FEDETIRRVAAGAIANLAMNAEAN 216
           + +V     ++ +  K+VE     L +L   +     + E  +  A     N   +    
Sbjct: 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARG 300

Query: 217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-----QMKLRSEGGIRAL 271
            EL+     + +  +   +++ P  L   AGAI NLC          +  LR E  + A+
Sbjct: 301 YELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAI 360

Query: 272 LGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIV 331
             ++   H  V+   +  + N A                          LI   A+P +V
Sbjct: 361 ADLLTNEHERVVKAASGALRNLAVDARNKE-------------------LIGKHAIPNLV 401

Query: 332 Q-----NANNEAAPIRRHIELALCHL----AQHEVNAREMISGGALWELVRISRDCSRED 382
           +       N+        +   L  +    A++   A+++     + +LV I++  +R +
Sbjct: 402 KNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSE 461

Query: 383 IRSLAHRTLSSSLTFRAEMRR 403
               A   +  ++    E+R+
Sbjct: 462 KEVRAAALVLQTIWGYKELRK 482

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 57.7 bits (138), Expect = 3e-09
 Identities = 51/310 (16%), Positives = 105/310 (33%), Gaps = 64/310 (20%)

Query: 136 LFEQVGLHKILSLL-ESEDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRS 192
           +    G+  ++ LL ++ D ++       + NL++ ++ + +IV+     L+  +++  S
Sbjct: 129 IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHS 188

Query: 193 --------------FEDETIRRVAAGAIANLA-MNAEANQELIMAQGGISLL-----STT 232
                          E E++    AG + N++   +EA ++L    G +  L     +  
Sbjct: 189 GWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI 248

Query: 233 AADAEDPQTLRMVAGAIANL--------------------------CGNDKLQMKLRSEG 266
                D + +      + NL                              +    L    
Sbjct: 249 GQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308

Query: 267 GIRALLGMVRCGH-PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG 325
            +R  + +++    P +L   A  I N           +R             S L ++ 
Sbjct: 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIR-------------SALRQEK 355

Query: 326 ALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRS 385
           AL  I     NE   + +    AL +LA    N +E+I   A+  LV+      +    +
Sbjct: 356 ALSAIADLLTNEHERVVKAASGALRNLAVDARN-KELIGKHAIPNLVKNLPGGQQNSSWN 414

Query: 386 LAHRTLSSSL 395
            +  T+ S L
Sbjct: 415 FSEDTVISIL 424

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 16/131 (12%), Positives = 45/131 (34%), Gaps = 19/131 (14%)

Query: 265 EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED 324
           +  +  ++ M+      V S  A  + +      +                  ++ + + 
Sbjct: 47  QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKV-----------------KTDVRKL 89

Query: 325 GALPWIVQNANNEAAPIRRHIELALCHLA--QHEVNAREMISGGALWELVRISRDCSRED 382
             +P +V   ++    +      AL +++  + + N   + +   +  LVR+ R     D
Sbjct: 90  KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMD 149

Query: 383 IRSLAHRTLSS 393
           +  +   TL +
Sbjct: 150 LTEVITGTLWN 160

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 95.7 bits (238), Expect = 4e-22
 Identities = 51/307 (16%), Positives = 106/307 (34%), Gaps = 58/307 (18%)

Query: 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS----- 192
            + G+ +  + + +   +    AV V+  L+ +E ++  + E GGL ++  LL+      
Sbjct: 30  HEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMY 89

Query: 193 -----FEDETIRRVAAGAIANLAMNAEANQELIMAQGG-----ISLLSTTAADAEDPQTL 242
                    T+RR A  A+ NL     AN+  + +  G     ++ L +     E     
Sbjct: 90  GLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-----ESEDLQ 144

Query: 243 RMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFA-KCES 298
           +++A  + NL    +   +  LR  G ++AL+           L  V   + N +  C  
Sbjct: 145 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204

Query: 299 --------------------------------RAATQVRFIRCTATGVKSGRSLLIEDGA 326
                                                +R +       +  R +L E+  
Sbjct: 205 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 264

Query: 327 LPWIVQNANNEAAPIRRHIELALCHL-AQHEVNAREMISGGALWELVRISRDCSREDIRS 385
           L  ++Q+  + +  I  +    L +L A++  +   +   GA+  L  +      + I  
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS-KHKMIAM 323

Query: 386 LAHRTLS 392
            +   L 
Sbjct: 324 GSAAALR 330

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 89.5 bits (222), Expect = 5e-20
 Identities = 40/242 (16%), Positives = 93/242 (38%), Gaps = 31/242 (12%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLA--AEEANQEKIVEAGGLSSLLMLLRSFEDETI 198
            +  +++ L+SE  +++     V+ NL+  A+  +++ + E G + +L+      + E+ 
Sbjct: 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 187

Query: 199 RRVAAGAIANLAMNAEANQ-ELIMAQGGISLLSTTAADAEDPQTLRMV---AGAIANLC- 253
            +    A+ NL+ +   N+ ++    G ++ L  T        TL ++    G + N+  
Sbjct: 188 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 254 ---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCT 310
               N+  +  LR    ++ LL  ++     ++S     + N                  
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL----------------- 290

Query: 311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA----QHEVNAREMISGG 366
           +      +  L + GA+  +    +++   I      AL +L         +A  M  G 
Sbjct: 291 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGS 350

Query: 367 AL 368
           +L
Sbjct: 351 SL 352

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 95.8 bits (238), Expect = 8e-22
 Identities = 48/262 (18%), Positives = 101/262 (38%), Gaps = 20/262 (7%)

Query: 139 QVGLHKILSLLESEDANVRIHAVKVVANLA-AEEANQEKIV-EAGGLSSLLMLLRSFEDE 196
           QV         +     +R +A   + NL   + AN+  +    G + +L+  L+S E E
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ESE 257

Query: 197 TIRRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL--- 252
            +++V A  + NL+  A   +++ +   G +  L   A + +   TL+ V  A+ NL   
Sbjct: 258 DLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317

Query: 253 CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT 312
           C  +K  +    +G +  L+G +          +                 +R +     
Sbjct: 318 CTENKADI-CAVDGALAFLVGTLTYRSQTNTLAIIES----------GGGILRNVSSLIA 366

Query: 313 GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL-AQHEVNAREMISGGALWEL 371
             +  R +L E+  L  ++Q+  + +  I  +    L +L A++  +   +   GA+  L
Sbjct: 367 TNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML 426

Query: 372 VRISRDCSREDIRSLAHRTLSS 393
             +      + I   +   L +
Sbjct: 427 KNLIHS-KHKMIAMGSAAALRN 447

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 91.2 bits (226), Expect = 3e-20
 Identities = 36/232 (15%), Positives = 89/232 (38%), Gaps = 28/232 (12%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLA--AEEANQEKIVEAGGLSSLLMLLRSFEDETI 198
            +  +++ L+SE  +++     V+ NL+  A+  +++ + E G + +L+      + E+ 
Sbjct: 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKEST 303

Query: 199 RRVAAGAIANLAMNAEANQ-ELIMAQGGISLLSTTAADAEDPQTLRMV---AGAIANLC- 253
            +    A+ NL+ +   N+ ++    G ++ L  T        TL ++    G + N+  
Sbjct: 304 LKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 363

Query: 254 ---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCT 310
               N+  +  LR    ++ LL  ++     ++S     + N                  
Sbjct: 364 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL----------------- 406

Query: 311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ-HEVNARE 361
           +      +  L + GA+  +    +++   I      AL +L        ++
Sbjct: 407 SARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 66.9 bits (163), Expect = 3e-12
 Identities = 32/283 (11%), Positives = 91/283 (32%), Gaps = 41/283 (14%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDET------- 197
           + SLL     + +    + +  +++ + +   + ++G L  L+ LL   + ++       
Sbjct: 34  VYSLLSMLGTHDKDDMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSR 93

Query: 198 ----IRRVAAGAIANLAMNAEANQELIMAQGGISLLS----------------------- 230
                R  A+ A+ N+  +   ++        + LL                        
Sbjct: 94  GSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQD 153

Query: 231 TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290
                A     +      +  L  +++ +  +   GG++A+  +++              
Sbjct: 154 KNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYS 213

Query: 291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC 350
               +    A   +  +       K   +L    G +  +V    +E+  +++ I   L 
Sbjct: 214 ITLRRY---AGMALTNLTFGDVANK--ATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 351 HLA--QHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391
           +L+      + + +   G++  L+  + +  +E         L
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSAL 311

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 92.0 bits (228), Expect = 2e-20
 Identities = 32/250 (12%), Positives = 82/250 (32%), Gaps = 29/250 (11%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIR 199
            +   + LL +    V+  A+  + N+A +    ++ +++   +  +L L  S    ++ 
Sbjct: 174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLI 232

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ 259
           R A   ++NL    +   +  +    +  L+     + D +TL     AI+ L    +  
Sbjct: 233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLA-KLIYSMDTETLVDACWAISYLSDGPQEA 291

Query: 260 MKLRSE-GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR------------- 305
           ++   +    + L+ ++      V +   R + N           V              
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 306 ------------FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353
                        I     G       +I+   +P +V+         ++    A+ + +
Sbjct: 352 SPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNAS 411

Query: 354 QHEVNAREMI 363
              +   ++I
Sbjct: 412 SGGLQRPDII 421

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 88.2 bits (218), Expect = 5e-19
 Identities = 51/374 (13%), Positives = 135/374 (36%), Gaps = 46/374 (12%)

Query: 24  RKLLQNEIHMRKTA-EEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEE 82
           R+    ++ +RK   +E L K +      T+     + + S +    +  +  +++L + 
Sbjct: 34  RRRDTQQVELRKAKRDEALAK-RRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQM 92

Query: 83  IVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGL 142
              L S  +Q    A          +F    +               + PI  + +   +
Sbjct: 93  TQQLNSDDMQEQLSATV--------KFRQILS------------REHRPPIDVVIQAGVV 132

Query: 143 HKILSLLESED-ANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
            +++  +       +++ A   + N+A    A  + +V+A  +   + LL +     ++ 
Sbjct: 133 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKE 191

Query: 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQ 259
            A  A+ N+A ++   ++ ++    +  +     ++  P  +R     ++NLC G     
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPI-LGLFNSNKPSLIRTATWTLSNLCRGKKPQP 250

Query: 260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRS 319
                   +  L  ++     + L      I+  +                  G +    
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD-----------------GPQEAIQ 293

Query: 320 LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDC 378
            +I+      +V+  ++E+  ++     A+ ++    ++  + +I+ G L  L  +    
Sbjct: 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS-S 352

Query: 379 SREDIRSLAHRTLS 392
            +E+I+  A  T+S
Sbjct: 353 PKENIKKEACWTIS 366

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 76.2 bits (187), Expect = 4e-15
 Identities = 39/216 (18%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLR 191
           I  + +     +++ LL  E   V+  A++ V N+    +   + ++ AG L +L +LL 
Sbjct: 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLS 351

Query: 192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIAN 251
           S   E I++ A   I+N+        + ++    I  L      A + +T +    AI+N
Sbjct: 352 S-PKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISN 409

Query: 252 LCGNDKLQ----MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI 307
                  +      L S+G I+ L  ++      ++      + N  K            
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK------ 463

Query: 308 RCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRR 343
                 +      + + G +  I     NE   I  
Sbjct: 464 EARGLNINENADFIEKAGGMEKIFNCQQNENDKIYE 499

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 88.9 bits (220), Expect = 2e-19
 Identities = 50/274 (18%), Positives = 111/274 (40%), Gaps = 27/274 (9%)

Query: 127 NGQKAPITKLFEQVGLHKILSLL-ESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLS 184
             ++ PI  +     + K +S L +++ + ++  +   + N+A+  + Q + +V+ G + 
Sbjct: 87  REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIP 146

Query: 185 SLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI----SLLSTTAADAEDPQ 240
           + + LL S     I   A  A+ N+A +  A ++L++  G I    +LL+          
Sbjct: 147 AFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205

Query: 241 TLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299
            LR +   ++NLC   +        E  +  L+ ++    P+VL+     I+        
Sbjct: 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTD---- 261

Query: 300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVN 358
                        G      ++++ G +P +V+       PI      A+ ++    +  
Sbjct: 262 -------------GPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308

Query: 359 AREMISGGALWELVRISRDCSREDIRSLAHRTLS 392
            +++I  GAL     +  +    +I+  A  T+S
Sbjct: 309 TQKVIDAGALAVFPSLLTNPK-TNIQKEATWTMS 341

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 84.3 bits (208), Expect = 7e-18
 Identities = 29/159 (18%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIR 199
            + +++ LL + +  +   A++ + N+    +   +K+++AG L+    LL +     I+
Sbjct: 275 VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN-PKTNIQ 333

Query: 200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDK 257
           + A   ++N+    +   + ++  G +  L    + A D +T +  A AI N    G  +
Sbjct: 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVE 392

Query: 258 LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296
             + L   G I  L+ ++      ++  +   I+N  + 
Sbjct: 393 QIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA 431

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 79.3 bits (195), Expect = 3e-16
 Identities = 37/274 (13%), Positives = 92/274 (33%), Gaps = 28/274 (10%)

Query: 128 GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSL 186
            +         +  L  ++ LL   D  V   +   ++ L        E +V+ G +  L
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 187 LMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVA 246
           + LL +  +  I   A  AI N+    +   + ++  G +++   +          +   
Sbjct: 280 VKLLGA-TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFP-SLLTNPKTNIQKEAT 337

Query: 247 GAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVR 305
             ++N+  G      ++ + G +  L+G++         + A  I N+    +       
Sbjct: 338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIV-- 395

Query: 306 FIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-------EVN 358
                          L+  G +  ++   + +   I + I  A+ ++ Q        E  
Sbjct: 396 --------------YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL 441

Query: 359 AREMISGGALWELVRISRDCSREDIRSLAHRTLS 392
           +  +   G L ++  + R  + E +   +   + 
Sbjct: 442 SIMIEECGGLDKIEALQRHEN-ESVYKASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 63.5 bits (154), Expect = 4e-11
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 35/276 (12%)

Query: 165 ANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLA-MNAEANQELIMAQ 223
            + A  +    +      +  ++  + S  +   +  A  A   L     +   + I+  
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRA 99

Query: 224 GGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDV 282
           G I    +     +        A A+ N+  G  +    +   G I A + ++   H  +
Sbjct: 100 GLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHI 159

Query: 283 LSQVARGIANFAKCESRAATQVR------------------------------FIRCTAT 312
             Q    + N A   S     V                                +     
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219

Query: 313 GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI-SGGALWEL 371
                  L   +  LP +V+  ++    +      A+ +L        EM+   G + +L
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 372 VRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           V++        I + A R + + +T   E  +  I+
Sbjct: 280 VKLLGATE-LPIVTPALRAIGNIVTGTDEQTQKVID 314

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 85.3 bits (210), Expect = 3e-18
 Identities = 41/262 (15%), Positives = 96/262 (36%), Gaps = 8/262 (3%)

Query: 142 LHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
           + K +  L S+D   +      + +   + E+ ++++ + GG+  L+ LLRS  ++ +++
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQ 62

Query: 201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQM 260
            AAGA+ NL   +  N+     Q GI    +      + +  + + G + NL   D+L+ 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 261 KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSL 320
           +L     +  L   V           +         E         +R  ++     +++
Sbjct: 123 ELI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNA-TGCLRNLSSADAGRQTM 180

Query: 321 LIEDGALPWIV---QNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD 377
               G +  ++   QN    +    + +E  +C +  +     +        +L   +R+
Sbjct: 181 RNYSGLIDSLMAYVQNCVAASRCDDKSVENCMC-VLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 378 CSREDIRSLAHRTLSSSLTFRA 399
              E   +      S  +    
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNN 261

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 80.3 bits (197), Expect = 1e-16
 Identities = 40/274 (14%), Positives = 86/274 (31%), Gaps = 15/274 (5%)

Query: 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLRS 192
            ++++  G+ K++ LL S + NV+  A   + NL      N+ +     G+   + LLR 
Sbjct: 38  QQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRR 97

Query: 193 FEDETIRRVAAGAIANLAMNAEANQELI-------------MAQGGISLLSTTAADAEDP 239
             +  I++   G + NL+   E  +ELI                G     S  + +  DP
Sbjct: 98  TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDP 157

Query: 240 QTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR 299
           +      G + NL   D  +  +R+  G+   L               + + N   C   
Sbjct: 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN-CMCVLH 216

Query: 300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA 359
             +            +   +              +N     +  + +  L     +   +
Sbjct: 217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276

Query: 360 REMISGGALWELVRISRDCSREDIRSLAHRTLSS 393
             +    A+   + +     ++         L +
Sbjct: 277 GWLYHSDAIRTYLNLMGKSKKDATLEACAGALQN 310

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 58.3 bits (140), Expect = 2e-09
 Identities = 40/280 (14%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 148 LLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF------EDETIRRV 201
             E  D  V  +A   + NL++ +A ++ +    GL   LM            D+     
Sbjct: 151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVEN 210

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAE--------DPQTLRMVAGAIANLC 253
               + NL+   +A       Q   +  +     +         D          +    
Sbjct: 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEE 270

Query: 254 GNDKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTAT 312
            N K    L     IR  L ++        L   A  + N    +   ++ +  +     
Sbjct: 271 TNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL----- 325

Query: 313 GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELV 372
                  + +++  LP I +   +  + + R     L ++++H +    ++      E+ 
Sbjct: 326 -------IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLL-HRVMGNQVFPEVT 377

Query: 373 RISRDCSR-----EDIRSLAHRTLSSSLTFRAEMRRLRIE 407
           R+    +      EDI S A  T+ + +  + ++ +    
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 19/124 (15%), Positives = 46/124 (37%), Gaps = 6/124 (4%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF-----ED 195
           GL +I  LL+S +++V      +++N++        +        +  LL S        
Sbjct: 332 GLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLLTSHTGNTSNS 390

Query: 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN 255
           E I   A   + NL  +     +   +   ++ +      +  P+        ++++  +
Sbjct: 391 EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS 450

Query: 256 DKLQ 259
            +LQ
Sbjct: 451 KELQ 454

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 56.4 bits (135), Expect = 8e-09
 Identities = 38/281 (13%), Positives = 76/281 (27%), Gaps = 35/281 (12%)

Query: 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE 194
            +    GL   L               K V N      N    ++A   +    L  +  
Sbjct: 179 TMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238

Query: 195 DETIRRVAAGAIANLAMNAEANQEL---------------IMAQGGISLLSTTAADAEDP 239
           +    + + G  +N +     N                  +     I         ++  
Sbjct: 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298

Query: 240 QTLRMVAGAIANLCGNDKLQ------MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293
            TL   AGA+ NL  +  L       +    E G+  +  +++ G+ DV+   A  ++N 
Sbjct: 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM 358

Query: 294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA 353
           ++                         +     L        + +  I       + +L 
Sbjct: 359 SRHP----------LLHRVMGNQVFPEVT---RLLTSHTGNTSNSEDILSSACYTVRNLM 405

Query: 354 Q-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS 393
                 A++  S   L  ++ + R  +       A   LS 
Sbjct: 406 ASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSD 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 23/204 (11%), Positives = 60/204 (29%), Gaps = 19/204 (9%)

Query: 159 HAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN-----A 213
           +    +            +  +  + + L L+   + +      AGA+ NL  +     +
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS 320

Query: 214 EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLG 273
             +Q + + + G+  +      + +   +R  A  ++N+  +  L               
Sbjct: 321 GMSQLIGLKEKGLPQI-ARLLQSGNSDVVRSGASLLSNMSRHPLLHRV------------ 367

Query: 274 MVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQ- 332
           M     P+V   +     N +  E   ++    +R                  L  I+  
Sbjct: 368 MGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINL 427

Query: 333 NANNEAAPIRRHIELALCHLAQHE 356
             ++ +        L L  +   +
Sbjct: 428 CRSSASPKAAEAARLLLSDMWSSK 451

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 1/76 (1%)

Query: 140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFEDETI 198
             L    +   S   ++   A   V NL A +    ++   +  L++++ L RS      
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 199 RRVAAGAIANLAMNAE 214
              A   ++++  + E
Sbjct: 437 AEAARLLLSDMWSSKE 452

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 18/169 (10%)

Query: 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRS 192
            ++ +  G+ K+L LL+ ++ +V+      + NL  E   N+ ++ E  G+  LL +L+ 
Sbjct: 46  KRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQ 105

Query: 193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLL--------------STTAADAED 238
             D   ++   G + NL+ N +  + L++ +  ++L                  A    D
Sbjct: 106 TRDLETKKQITGLLWNLSSN-DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLD 164

Query: 239 PQTLRMVAGAIANLC-GNDKLQMKLRSEGG-IRALLGMVRCGHPDVLSQ 285
                 V G + N+       +  +R   G I +L+  VR    D    
Sbjct: 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPD 213

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 73.4 bits (180), Expect = 4e-15
 Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 10/222 (4%)

Query: 138 EQVGLHKILSLLESEDAN--VRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFE 194
            ++ L + +S+LE++         A   + +   +++  ++++ +  G+  LL LL+  +
Sbjct: 6   MEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-Q 64

Query: 195 DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG 254
           +E ++R   GA+ NL      N+  +    G+  L        D +T + + G + NL  
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 255 NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGV 314
           NDKL+  + +E  +     ++            +             T    +R  ++  
Sbjct: 125 NDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGC--LRNMSSAG 182

Query: 315 KSGRSLLIEDG----ALPWIVQNANNEAAPIRRHIELALCHL 352
             GR  +        +L   V+    +  P  +  E  +C L
Sbjct: 183 ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 78.0 bits (191), Expect = 1e-15
 Identities = 42/322 (13%), Positives = 102/322 (31%), Gaps = 22/322 (6%)

Query: 90  LLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLL 149
            + L    ++ +   E  E               D  +     IT L  +     + +L 
Sbjct: 445 FVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA 504

Query: 150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANL 209
           ++E  N +    +V+  +   +  + K+V+ GG+ +LL +      E  +R A  A+A +
Sbjct: 505 KTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE-GTEKGKRHATQALARI 563

Query: 210 AM--NAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEG 266
            +  N E +     +   I  L                  A+ NL   N+ ++ ++  E 
Sbjct: 564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ 623

Query: 267 GIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGA 326
           G+  +   +   H  +    A+ + N    E                          +  
Sbjct: 624 GVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK-----------------MFEGNNDR 666

Query: 327 LPWIVQNANNEAAPIRRHIELALCHLAQHEVNA-REMISGGALWELVRISRDCSREDIRS 385
           + ++     +E          AL  +    V    ++++  +  +++          ++ 
Sbjct: 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQH 726

Query: 386 LAHRTLSSSLTFRAEMRRLRIE 407
                + + +    E+ +   E
Sbjct: 727 RGIVIILNMINAGEEIAKKLFE 748

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 76.4 bits (187), Expect = 4e-15
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 3/167 (1%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS 192
             ++ ++ G+ KI   L  +   +   A + + NL   E   +           L LL  
Sbjct: 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675

Query: 193 FEDETIRRVAAGAIANLA-MNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIAN 251
            EDE      AGA+A +  ++ +  ++++     + +L T  A+   P         I N
Sbjct: 676 DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN-PSPAVQHRGIVIILN 734

Query: 252 LC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE 297
           +    +++  KL     +  L G+ +                 A  E
Sbjct: 735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE 781

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 13/80 (16%), Positives = 32/80 (40%)

Query: 150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANL 209
            +   + R  A   +  LA E+   E + +   ++ +  L +  +D+ I       +A L
Sbjct: 18  LATPIDKRRAAANNLVVLAKEQTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAAL 77

Query: 210 AMNAEANQELIMAQGGISLL 229
             N+    + ++ + G+   
Sbjct: 78  CENSVERTKGVLTELGVPWF 97

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 32/150 (21%), Positives = 59/150 (39%), Gaps = 6/150 (4%)

Query: 138 EQVGLHKILSLLESEDANVRIHAVKVVANLAAE--EANQEKIVEAGGLSSLLMLLRSFED 195
           +Q  +  +LSLLE  D +VR   VK++ +L  +     Q+ I+ +    S LM L +   
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR 179

Query: 196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGA---IANL 252
           E IR      +  L  +  A Q+++  +     L     +  +     +V      + NL
Sbjct: 180 EVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNL 239

Query: 253 C-GNDKLQMKLRSEGGIRALLGMVRCGHPD 281
              N+  Q   +    I+ +      G  +
Sbjct: 240 LKNNNSNQNFFKEGSYIQRMKPWFEVGDEN 269

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 43.6 bits (103), Expect = 5e-05
 Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 21/147 (14%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAG 204
            +     ++   R     ++  +   +  ++ +        L  +  + +   +R  A  
Sbjct: 59  AIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNI-----LNNMALNDKSACVRATAIE 113

Query: 205 AIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS 264
           + A            I+        S   A  +     R  A AI+           +  
Sbjct: 114 STAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS----------VIND 157

Query: 265 EGGIRALLGMVRCGHPDVLSQVARGIA 291
           +  I  L+ +++  + DV +  A  I 
Sbjct: 158 KATIPLLINLLKDPNGDVRNWAAFAIN 184

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 23/219 (10%), Positives = 62/219 (28%), Gaps = 28/219 (12%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAG 204
           +  LL+  ++  RI + +V+     ++A          +   +      ++   R + A 
Sbjct: 28  LFRLLDDHNSLKRISSARVLQLRGGQDA----------VRLAIEFCSD-KNYIRRDIGAF 76

Query: 205 AIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS 264
            +  + +  +    +       ++L+  A + +          + A  C  +     + S
Sbjct: 77  ILGQIKICKKCEDNV------FNILNNMALNDKSACVRATAIESTAQRCKKN----PIYS 126

Query: 265 EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAA------TQVRFIRCTATGVKSGR 318
              +            +V    A  I+      +              +R  A    +  
Sbjct: 127 PKIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININ 186

Query: 319 SLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV 357
                D      V+   ++   +R    + L +     V
Sbjct: 187 KYDNSD-IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRV 224

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 43.2 bits (101), Expect = 7e-05
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 36/222 (16%)

Query: 142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
           L K++ LL+ +   V  +A+ ++  +A     +E + E   L  L  LL+  E   + + 
Sbjct: 34  LKKLIELLDDDLWTVVKNAISIIMVIAKT---REDLYEPM-LKKLFSLLKKSEAIPLTQE 89

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
            A A   +A                          E P+ ++ +   +         + K
Sbjct: 90  IAKAFGQMA-------------------------KEKPELVKSMIPVLFANYRIGDEKTK 124

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLL 321
           +     +   L  +   +P +++ + R   +    ++R   + +             S  
Sbjct: 125 IN----VSYALEEIAKANPMLMASIVRDFMSMLSSKNR---EDKLTALNFIEAMGENSFK 177

Query: 322 IEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI 363
             +  LP I+   ++    +R     AL HLA      R+++
Sbjct: 178 YVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV 219

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 28/281 (9%), Positives = 77/281 (27%), Gaps = 34/281 (12%)

Query: 134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF 193
             +     +  +   + +   N +   V+++ N+   +    ++ + G +  +L  L + 
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK 510

Query: 194 ED--ETIRRVAAGAIANLAM------------NAEANQELIMAQGGISLLSTTAADAEDP 239
           +D  E IR +   A+  + +               A   L       + +       ++ 
Sbjct: 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ 570

Query: 240 QTLRMV---AGAIANLCGNDK------LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290
             L        A+ NL  ++        +  + ++     +  ++   +  +       I
Sbjct: 571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELI 630

Query: 291 ANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC 350
           +N        A +                          +V+         +R +     
Sbjct: 631 SNMMSHPLTIAAKF-----FNLENPQSLR------NFNILVKLLQLSDVESQRAVAAIFA 679

Query: 351 HLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL 391
           ++A       + +          I     + D   L  R L
Sbjct: 680 NIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLL 720

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 41.3 bits (96), Expect = 5e-04
 Identities = 27/193 (13%), Positives = 65/193 (33%), Gaps = 9/193 (4%)

Query: 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI-SLL 229
             N++ I+    +S L   + +      ++     I N+  +     +L   QG +  +L
Sbjct: 447 LFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRSKNFIPQLA-QQGAVKIIL 504

Query: 230 STTAADAEDPQTLRMVAG-AIANLC---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQ 285
              A   +  + +R++   A+  +        +  K  +   I  L  ++    P   + 
Sbjct: 505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNP 564

Query: 286 VAR--GIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRR 343
           +     I      E+  A        T+ G +  + ++        I     +E  P++R
Sbjct: 565 LHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQR 624

Query: 344 HIELALCHLAQHE 356
                + ++  H 
Sbjct: 625 STLELISNMMSHP 637

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 18   EDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKR 77
               +   + L++++   + +EEE     +R+    E       E++KL K L     +K+
Sbjct: 956  ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE-------EIAKLRKELHQTQTEKK 1008

Query: 78   KLEEEIVILRSQLLQLTFEADQMQKCLER 106
             +EE     + +  QL  E  +    L+ 
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKT 1037

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 69/475 (14%), Positives = 124/475 (26%), Gaps = 152/475 (32%)

Query: 32  HMR-KTAEEEL-NK--LKSRLGQYTESGSCRDAE--MSKLHKTLE-DETLQKRKLEEE-- 82
           HM  +T E +   K  L      + ++  C+D +     +    E D  +  +       
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65

Query: 83  --IVILRSQ-----------LLQLTFE--ADQMQKCLERGEFGNTFTGLDKHSQFRDSGN 127
                L S+           +L++ ++     ++      E          + + RD   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT-----EQRQPSMMTRMYIEQRDRLY 120

Query: 128 GQKAPITKLF----EQV-GLHKILSLLESEDANVRIHAV----KVVANLAAEEANQEKIV 178
                  K      +    L + L  L     NV I  V    K    +A +     K+ 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAK-NVLIDGVLGSGKTW--VALDVCLSYKVQ 177

Query: 179 EA--GG---------------LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE--- 218
                                L  L  LL   +     R  +   +N+ +   + Q    
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR--SDHSSNIKLRIHSIQAELR 235

Query: 219 --LIMAQGGISLL------STTAADAEDPQ-----TLR-------MVAGAIANLCGNDKL 258
             L        LL      +  A +A +       T R       + A    ++  +   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 259 QMKLRSEG-GIRAL-LGM--------VRCGHPDVLSQVARGIANFAKCESRAATQVRFIR 308
                 E   +    L          V   +P  LS +A                     
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE-------------------- 335

Query: 309 CTATGVKSGRSLLIEDGALPWI-VQNANNEAAPIRRHIELALCHLAQHEVNAREM----- 362
                        I DG   W   ++ N +   +   IE +L  L   E   R+M     
Sbjct: 336 ------------SIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEY--RKMFDRLS 379

Query: 363 -------ISGGAL---WELVRISRDCSREDIRSLAHRTLSSSLTFR-AEMRRLRI 406
                  I    L   W       D  + D+  + ++    SL  +  +   + I
Sbjct: 380 VFPPSAHIPTILLSLIWF------DVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 39.7 bits (93), Expect = 8e-04
 Identities = 27/149 (18%), Positives = 49/149 (32%), Gaps = 33/149 (22%)

Query: 145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAG 204
            +  L+ +   VR  A   +  +  E A          +  L+  L+  ED  +RR AA 
Sbjct: 24  YIKNLQDDSYYVRRAAAYALGKIGDERA----------VEPLIKALKD-EDAWVRRAAAD 72

Query: 205 AIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS 264
           A+  +  +  A + LI            A   ED    +  A A+           ++  
Sbjct: 73  ALGQIG-DERAVEPLI-----------KALKDEDGWVRQSAAVALG----------QIGD 110

Query: 265 EGGIRALLGMVRCGHPDVLSQVARGIANF 293
           E  +  L+  ++     V    A  +   
Sbjct: 111 ERAVEPLIKALKDEDWFVRIAAAFALGEI 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	408
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.98
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.94
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.94
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.93
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.84
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.79
3grl_A	651	General vesicular transport factor P115; vesicle t	99.62
3grl_A	651	General vesicular transport factor P115; vesicle t	99.56
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.43
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.4
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.3
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.25
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.23
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.81
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.77
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.74
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.61
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.58
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.51
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.51
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.49
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.49
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.46
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.43
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.34
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.32
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.29
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.2
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.19
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.13
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.08
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.04
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.04
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	97.97
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.9
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	97.84
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.8
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.79
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.78
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.67
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.67
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.57
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.57
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.56
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.49
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	97.38
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.46
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.31
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.4
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.23
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	95.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.84
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.76
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.68
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.16
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	93.68
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	93.59
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.46
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.41
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.33
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	93.24
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	93.21
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	92.75
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.35
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.18
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	91.92
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.7
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	91.63
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	91.14
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	90.94
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	90.94
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	90.52
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.08
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.42
2x1g_F	971	Cadmus; transport protein, developmental protein,	89.21
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	88.25
2x19_B	963	Importin-13; nuclear transport, protein transport;	88.23
2x19_B	963	Importin-13; nuclear transport, protein transport;	88.17
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	88.09
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	87.75
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	87.47
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.7
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	85.92
2x1g_F	971	Cadmus; transport protein, developmental protein,	85.06
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	83.97
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	83.83
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	80.7
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.57

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.98  E-value=1.2e-30  Score=268.54  Aligned_cols=290  Identities=19%  Similarity=0.280  Sum_probs=246.9

Q ss_pred             HhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCC
Q 041050           76 KRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SED  153 (408)
Q Consensus        76 ~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~  153 (408)
                      +.++++.+.+++|.+.+.+.++++ .||.++++                     .++++..+++.|+||+|+++|+ +++
T Consensus        56 ~~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e---------------------~~ppi~~ii~~G~ip~LV~lL~~~~~  114 (510)
T 3ul1_B           56 NWSVEDIVKGINSNNLESQLQATQAARKLLSRE---------------------KQPPIDNIIRAGLIPKFVSFLGKTDC  114 (510)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCS---------------------SCCCHHHHHHTTHHHHHHHHTTCTTC
T ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC---------------------CCchHHHHHHCCCHHHHHHHHCCCCC
Confidence            346899999999999999999987 88888876                     7888999999999999999998 567


Q ss_pred             HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          154 ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      +.+|..|+|+|+||+. +++++..+++.|++|.|+.+|.+ +++.++..|+|+|+||+.+++..+..+.+.|+++.|+.+
T Consensus       115 ~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s-~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~l  193 (510)
T 3ul1_B          115 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLAL  193 (510)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHH
Confidence            9999999999999987 78899999999999999999994 789999999999999999889999999999999888776


Q ss_pred             hhc----------------------------------------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050          233 AAD----------------------------------------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE  265 (408)
Q Consensus       233 L~~----------------------------------------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~  265 (408)
                      +..                                              ++++.++..++++|++|+ .+++....+.+.
T Consensus       194 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~  273 (510)
T 3ul1_B          194 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK  273 (510)
T ss_dssp             TCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTT
T ss_pred             HHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhc
Confidence            531                                              345667777888888888 444556677889


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050          266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI  345 (408)
Q Consensus       266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a  345 (408)
                      |+++.|+.++.++++.++..++++|+|++.                 +++.....+++.|+++.|+.++.++++.++..|
T Consensus       274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~-----------------~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A  336 (510)
T 3ul1_B          274 GVVPQLVKLLGATELPIVTPALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  336 (510)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHH
T ss_pred             ccchhhhhhhcCCChhhhhHHHHHHHHhhc-----------------CCHHHHHHHhhccchHHHHHHhcCCCHHHHHHH
Confidence            999999999999999999999999999997                 888888999999999999999999999999999


Q ss_pred             HHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhh
Q 041050          346 ELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLR  405 (408)
Q Consensus       346 ~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~  405 (408)
                      +|+|+|++.+ .++...+++.|+++.|+.++.+.+. +++..|.++|.+     .+.....+.+.|
T Consensus       337 ~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~-~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g  401 (510)
T 3ul1_B          337 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF-KTQKEAAWAITNYTSGGTVEQIVYLVHCG  401 (510)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCH-HHHHHHHHHHHHHHHHCCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCH-HHHHHHHHHHHHHHccCCHHHHHHHHHCC
Confidence            9999999987 4556677799999999999997654 445555555433     344444455554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=7.9e-31  Score=257.36  Aligned_cols=258  Identities=19%  Similarity=0.207  Sum_probs=222.1

Q ss_pred             cchhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCC-chhHHHHHHhCC-HH
Q 041050          118 KHSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAE-EANQEKIVEAGG-LS  184 (408)
Q Consensus       118 ~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~-i~  184 (408)
                      .....+.++++..++.+.+++.||++.|+.+|.+           .++.++..|+++|.||+.+ +.++..+...+| ||
T Consensus        51 ~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp  130 (354)
T 3nmw_A           51 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR  130 (354)
T ss_dssp             HHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHH
Confidence            3467888999888888999999999999999953           2478999999999999984 558877876666 99


Q ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHH
Q 041050          185 SLLMLLRSFEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKL  262 (408)
Q Consensus       185 ~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i  262 (408)
                      .|+.+|.+ +++.++..|+++|+||+.. ++.++..|++.|++|.|+.+|.++.++.+++.++++|+||+. ++.++..+
T Consensus       131 ~LV~LL~s-~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i  209 (354)
T 3nmw_A          131 ALVAQLKS-ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADI  209 (354)
T ss_dssp             HHHHGGGC-SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCC-CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHH
Confidence            99999994 7899999999999999984 478999999999999999987677788999999999999996 88888888


Q ss_pred             H-hcccHHHHHHhhcCCCH----HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050          263 R-SEGGIRALLGMVRCGHP----DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE  337 (408)
Q Consensus       263 ~-~~g~l~~L~~lL~~~~~----~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~  337 (408)
                      . ..|+++.|+.+|.++++    ++++.|+++|+||+.              -.+++++.+..+.+.|++|.|+.+|+++
T Consensus       210 ~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~--------------~~a~~~~~~~~i~~~g~i~~Lv~lL~~~  275 (354)
T 3nmw_A          210 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS--------------LIATNEDHRQILRENNCLQTLLQHLKSH  275 (354)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH--------------HHTTCHHHHHHHHTTTHHHHHHHHTTCS
T ss_pred             HHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh--------------hccCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence            8 78999999999986654    599999999999983              0125788899999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          338 AAPIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       338 ~~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      +.+++++|+++|+||+. +++++..+++.|+++.|++++.+.+. .++..|.++|
T Consensus       276 ~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~-~i~~~A~~aL  329 (354)
T 3nmw_A          276 SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAAL  329 (354)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSH-HHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            99999999999999996 57788889999999999999997655 4455555443

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=2.6e-29  Score=259.75  Aligned_cols=291  Identities=19%  Similarity=0.283  Sum_probs=244.3

Q ss_pred             HhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CCC
Q 041050           76 KRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SED  153 (408)
Q Consensus        76 ~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~~  153 (408)
                      ...+++.+.+++|...+....+.+ .|+.++++                     .++.+..+++.|++|.|+.+|+ +++
T Consensus        75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~---------------------~~~~i~~ii~~G~ip~Lv~lL~~~~~  133 (529)
T 3tpo_A           75 NWSVEDIVKGINSNNLESQLQATQAARKLLSRE---------------------KQPPIDNIIRAGLIPKFVSFLGKTDC  133 (529)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSS---------------------SCCCHHHHHHTTHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC---------------------CCchHHHHHHCCCHHHHHHHHcCCCC
Confidence            346888999999999998888887 77776655                     6778899999999999999997 677


Q ss_pred             HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          154 ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      +.++..|+|+|+||+. ++.++..+++.|++|.|+.+|.+ +++.++..|+|+|+||+.+++.++..+++.|+++.|+.+
T Consensus       134 ~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s-~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~l  212 (529)
T 3tpo_A          134 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLAL  212 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHH
Confidence            9999999999999998 67888999999999999999984 789999999999999999889999999999999888766


Q ss_pred             hhc----------------------------------------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhc
Q 041050          233 AAD----------------------------------------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSE  265 (408)
Q Consensus       233 L~~----------------------------------------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~  265 (408)
                      |..                                              ++++.++..++|+|++++ .++.....+.+.
T Consensus       213 L~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~  292 (529)
T 3tpo_A          213 LAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKK  292 (529)
T ss_dssp             TCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTT
T ss_pred             HhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhc
Confidence            531                                              245666777788888887 444556677889


Q ss_pred             ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHH
Q 041050          266 GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHI  345 (408)
Q Consensus       266 g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a  345 (408)
                      |+++.|+.++.++++.++..++++|+|++.                 +++.....+++.|+++.|+.++.++++.++..|
T Consensus       293 g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~-----------------~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a  355 (529)
T 3tpo_A          293 GVVPQLVKLLGATELPIVTPALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA  355 (529)
T ss_dssp             TCHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHH
T ss_pred             cchHHHHHHhcCCChhHHHHHHHHHHHHHc-----------------cchHHHHHHhhcccHHHHHHHHcCCCHHHHHHH
Confidence            999999999999999999999999999997                 888888999999999999999999999999999


Q ss_pred             HHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhhh
Q 041050          346 ELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLRI  406 (408)
Q Consensus       346 ~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~~  406 (408)
                      +|+|+|++.+ +.....+++.|+++.|+.++.+.+.+ ++..|.++|.+     .+.....+...|+
T Consensus       356 ~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~-v~~~A~~aL~nl~~~~~~~~~~~l~~~g~  421 (529)
T 3tpo_A          356 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK-TQKAAAWAITNYTSGGTVEQIVYLVHCGI  421 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHH-HHHHHHHHHHHHHHHSCHHHHHHHHHTTC
T ss_pred             HHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHH-HHHHHHHHHHHHHcCCCHHHHHHHHHCcC
Confidence            9999999987 45566677999999999999976554 44455544432     3444445555553

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.97  E-value=7.2e-30  Score=258.04  Aligned_cols=257  Identities=18%  Similarity=0.208  Sum_probs=220.1

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCc-hhHHHHHHhCC-HHH
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEE-ANQEKIVEAGG-LSS  185 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~-i~~  185 (408)
                      ....+.+++...++...+++.|++++|+.+|.+           .++.++..|+++|.||+.++ .++..+...+| ||.
T Consensus       168 Av~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~  247 (458)
T 3nmz_A          168 AVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA  247 (458)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHH
Confidence            356688888888888899999999999999952           34779999999999999954 57777766555 999


Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHH
Q 041050          186 LLMLLRSFEDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLR  263 (408)
Q Consensus       186 L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~  263 (408)
                      |+.+|. +.++.++..|+|+|+||+.. ++.++..|++.||+|.|+.+|.++.++.+++.++++|+||+. ++.++..+.
T Consensus       248 LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~  326 (458)
T 3nmz_A          248 LVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADIC  326 (458)
T ss_dssp             HHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence            999999 47899999999999999984 478999999999999999987677789999999999999996 888988888


Q ss_pred             -hcccHHHHHHhhcCCCH----HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCC
Q 041050          264 -SEGGIRALLGMVRCGHP----DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEA  338 (408)
Q Consensus       264 -~~g~l~~L~~lL~~~~~----~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~  338 (408)
                       ..|+++.|+.+|.++++    .+++.|+++|+||+.              -.+++++++..+.+.|++|.|+.+|++++
T Consensus       327 ~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~--------------~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~  392 (458)
T 3nmz_A          327 AVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS--------------LIATNEDHRQILRENNCLQTLLQHLKSHS  392 (458)
T ss_dssp             HSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHH--------------HHTTCHHHHHHHHHTTHHHHHHHHSSCSC
T ss_pred             HhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHh--------------cccCCHHHHHHHHHcccHHHHHHHHcCCC
Confidence             78999999999976554    599999999999983              01257888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcc-CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          339 APIRRHIELALCHLAQ-HEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       339 ~~v~~~a~~aL~~La~-~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      .+++++|+++|+|++. +++++..+++.|+++.|++++.+.+. .++..|.++|
T Consensus       393 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~-~v~~~Aa~AL  445 (458)
T 3nmz_A          393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAAL  445 (458)
T ss_dssp             HHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSH-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            9999999999999995 57888889999999999999987654 4444555443

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=8.9e-28  Score=243.98  Aligned_cols=280  Identities=18%  Similarity=0.220  Sum_probs=220.2

Q ss_pred             hhhcCCCCch-HHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050          123 RDSGNGQKAP-ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR  200 (408)
Q Consensus       123 l~~ls~~~~~-~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~  200 (408)
                      +.+++..+++ ...+++.|++|.|+.+|+++++.++..|+++|.||+. +++++..|++.||+|+|+.+|..+.++.++.
T Consensus        26 L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~  105 (457)
T 1xm9_A           26 IQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQK  105 (457)
T ss_dssp             HHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHH
Confidence            3444434444 4589999999999999999999999999999999998 5999999999999999999998446899999


Q ss_pred             HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--------cC-------CCHHHHHHHHHHHHHHhCCchhHHHHHhc
Q 041050          201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--------DA-------EDPQTLRMVAGAIANLCGNDKLQMKLRSE  265 (408)
Q Consensus       201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--------~~-------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~  265 (408)
                      .|+|+|+||+.+ +.++..+++ |++|.|+.+|.        +.       .++.+.+.++|+|+|||.+++++..+++.
T Consensus       106 ~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~  183 (457)
T 1xm9_A          106 QLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY  183 (457)
T ss_dssp             HHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS
T ss_pred             HHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHc
Confidence            999999999999 999999999 99999999993        11       35788889999999999889999999997


Q ss_pred             -ccHHHHHHhhcC------CCHHHHHHHHHHHHHhhcc------------------------------------------
Q 041050          266 -GGIRALLGMVRC------GHPDVLSQVARGIANFAKC------------------------------------------  296 (408)
Q Consensus       266 -g~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~------------------------------------------  296 (408)
                       |+++.|+.++.+      .+..+...|+++|.||+..                                          
T Consensus       184 ~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (457)
T 1xm9_A          184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYD  263 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------------------
T ss_pred             CCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhcccc
Confidence             999999999974      4556777888888888620                                          


Q ss_pred             ---------------------------------chhhhhHHHhhhhhcc-CChh----h-HHHHHhcCcHHHHHHhccCC
Q 041050          297 ---------------------------------ESRAATQVRFIRCTAT-GVKS----G-RSLLIEDGALPWIVQNANNE  337 (408)
Q Consensus       297 ---------------------------------~~~~~~~~~~~i~~~~-~~~~----~-~~~i~~~g~l~~Lv~lL~~~  337 (408)
                                                       +++......|++++++ |+..    . +..+.+.|++|.|++++.++
T Consensus       264 ~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~  343 (457)
T 1xm9_A          264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG  343 (457)
T ss_dssp             --CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS
T ss_pred             CCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC
Confidence                                             0011112235566654 3322    2 33445789999999999999


Q ss_pred             CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC-----HHHHHHHHHHHH----hccHhhHHHHHhhh
Q 041050          338 AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS-----REDIRSLAHRTL----SSSLTFRAEMRRLR  405 (408)
Q Consensus       338 ~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~-----~~~~~~~A~~~L----~~~~~~~~~~~~~~  405 (408)
                      +.++++.|+|+|.|++.++.+. .++..|+++.|++++.+.+     .+++...+.++|    ...+.....+...|
T Consensus       344 ~~~v~~~A~~aL~nls~~~~~~-~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g  419 (457)
T 1xm9_A          344 NSDVVRSGASLLSNMSRHPLLH-RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSS  419 (457)
T ss_dssp             CHHHHHHHHHHHHHHHTSGGGH-HHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHH
T ss_pred             CHhHHHHHHHHHHHHhcCHHHH-HHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9999999999999999987765 4555689999999999764     345555555444    44555555554443

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.7e-27  Score=220.20  Aligned_cols=235  Identities=23%  Similarity=0.409  Sum_probs=214.9

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      +++|.|+.+|.+++++++..|+++|.+++. .++++..+++.|+++.|+.+|.+ .++.++..|+++|+||+.+++.++.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcCChHHHH
Confidence            578999999999999999999999999998 55699999999999999999995 6799999999999999998899999


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                      .+++.|+++.|+.++ .++++.++..++++|+||+ .++.++..+.+.|+++.|+.+++++++.++..++++|+||+.  
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~--  157 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS--  157 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT--
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc--
Confidence            999999999999998 4678999999999999999 889999999999999999999999999999999999999997  


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHh
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISR  376 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~  376 (408)
                                     +++..+..+.+.|+++.|+.++.++++.++..|+++|++++.+ +.....+.+.|+++.|++++.
T Consensus       158 ---------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~  222 (252)
T 4hxt_A          158 ---------------GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLT  222 (252)
T ss_dssp             ---------------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGG
T ss_pred             ---------------CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHC
Confidence                           6777778899999999999999999999999999999999986 556677889999999999999


Q ss_pred             cCCHHHHHHHHHHHHhcc
Q 041050          377 DCSREDIRSLAHRTLSSS  394 (408)
Q Consensus       377 ~~~~~~~~~~A~~~L~~~  394 (408)
                      +.+. +++..|.++|.+.
T Consensus       223 ~~~~-~v~~~a~~~L~~l  239 (252)
T 4hxt_A          223 STDS-EVQKEAQRALENI  239 (252)
T ss_dssp             CSCH-HHHHHHHHHHHHH
T ss_pred             CCcH-HHHHHHHHHHHHH
Confidence            6544 6777777776543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=1.8e-27  Score=246.06  Aligned_cols=280  Identities=20%  Similarity=0.199  Sum_probs=224.8

Q ss_pred             hhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050          124 DSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRR  200 (408)
Q Consensus       124 ~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~  200 (408)
                      .+++ +..++...+++.|+||.|+.+|++++++++..|+++|.||+.  +++++..|++.||||+|+.+|.+..+..+++
T Consensus        73 ~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e  152 (584)
T 3l6x_A           73 QHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTE  152 (584)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHH
T ss_pred             HHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHH
Confidence            3443 467788889999999999999999999999999999999998  4899999999999999999999656789999


Q ss_pred             HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh-----------------cCCCHHHHHHHHHHHHHHhC-CchhHHHH
Q 041050          201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAA-----------------DAEDPQTLRMVAGAIANLCG-NDKLQMKL  262 (408)
Q Consensus       201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~-----------------~~~~~~v~~~a~~aL~nL~~-~~~~~~~i  262 (408)
                      .|+++|+||+.+ +.++..|++ +|+|.|+.++.                 ...++.++..++++|.||+. +++++..+
T Consensus       153 ~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i  230 (584)
T 3l6x_A          153 VITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKL  230 (584)
T ss_dssp             HHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             HHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            999999999998 999999996 67999999862                 23468999999999999995 45679999


Q ss_pred             Hhcc-cHHHHHHhhcC------CCHHHHHHHHHHHHHhhccch-hh----------------------------------
Q 041050          263 RSEG-GIRALLGMVRC------GHPDVLSQVARGIANFAKCES-RA----------------------------------  300 (408)
Q Consensus       263 ~~~g-~l~~L~~lL~~------~~~~v~~~a~~aL~nL~~~~~-~~----------------------------------  300 (408)
                      ++.+ +++.|+.++++      .+..++++|+++|+||+.+-. +.                                  
T Consensus       231 ~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v  310 (584)
T 3l6x_A          231 RECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVV  310 (584)
T ss_dssp             HHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHH
T ss_pred             HHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHH
Confidence            9855 56799999863      466789999999999986310 00                                  


Q ss_pred             ---------------hhHHHhhhhhc-cCC----hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHH
Q 041050          301 ---------------ATQVRFIRCTA-TGV----KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAR  360 (408)
Q Consensus       301 ---------------~~~~~~~i~~~-~~~----~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~  360 (408)
                                     .....+++.++ +|+    ...+..+.+.|++|.|+.+|.+++.++++.|+++|+||+.+..++.
T Consensus       311 ~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~  390 (584)
T 3l6x_A          311 RIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKE  390 (584)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHH
Confidence                           01112345555 343    2334455677999999999999999999999999999999987765


Q ss_pred             HHHhCCcHHHHHHHHhcCC-------HHHHHHHHHHHH----hccHhhHHHHHhhhh
Q 041050          361 EMISGGALWELVRISRDCS-------REDIRSLAHRTL----SSSLTFRAEMRRLRI  406 (408)
Q Consensus       361 ~l~~~g~i~~L~~ll~~~~-------~~~~~~~A~~~L----~~~~~~~~~~~~~~~  406 (408)
                      . +..|+++.|+++|.+.+       .+++...|.++|    ..++.....+.+.|.
T Consensus       391 ~-I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~  446 (584)
T 3l6x_A          391 L-IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQG  446 (584)
T ss_dssp             H-HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             H-HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            4 47899999999998763       345666666655    456777777776663

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=5.1e-27  Score=242.55  Aligned_cols=255  Identities=16%  Similarity=0.243  Sum_probs=220.3

Q ss_pred             hhhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC-----
Q 041050          120 SQFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS-----  192 (408)
Q Consensus       120 ~~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~-----  192 (408)
                      .+.+.++ ++...+...+++.|++|.|+.+|.+++++++..|+++|+||+. ++.++..+++.|++++|+.+|..     
T Consensus       141 a~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~  220 (529)
T 3tpo_A          141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLST  220 (529)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGG
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhH
Confidence            3456777 4556677889999999999999999999999999999999998 68899999999999988887742     


Q ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050          193 -----------------------------------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST  231 (408)
Q Consensus       193 -----------------------------------------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~  231 (408)
                                                               +.++.++..|+|+|++++.+++.....++..|+++.|+.
T Consensus       221 ~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~  300 (529)
T 3tpo_A          221 LACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  300 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHH
Confidence                                                     124456677778888888775677788899999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhh
Q 041050          232 TAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCT  310 (408)
Q Consensus       232 lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~  310 (408)
                      +| .++++.++..++++|+||+ +++..+..+++.|+++.|+.++.++++.+++.|+|+|+|++.               
T Consensus       301 lL-~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~---------------  364 (529)
T 3tpo_A          301 LL-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA---------------  364 (529)
T ss_dssp             HH-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT---------------
T ss_pred             Hh-cCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc---------------
Confidence            98 5688999999999999998 788889999999999999999999999999999999999997               


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          311 ATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       311 ~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                        ++++.+..+.+.|++|.|+.++.+++.+++..|+|+|+|++.+  .++...+++.|+++.|++++.+.+. .+...+.
T Consensus       365 --~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~-~i~~~~L  441 (529)
T 3tpo_A          365 --GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVIL  441 (529)
T ss_dssp             --SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHH
T ss_pred             --ccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCH-HHHHHHH
Confidence              8889999999999999999999999999999999999999974  5667889999999999999997654 4455555


Q ss_pred             HHHhc
Q 041050          389 RTLSS  393 (408)
Q Consensus       389 ~~L~~  393 (408)
                      .+|.+
T Consensus       442 ~aL~n  446 (529)
T 3tpo_A          442 DAISN  446 (529)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=2.4e-27  Score=232.63  Aligned_cols=221  Identities=16%  Similarity=0.199  Sum_probs=194.7

Q ss_pred             hhhhhcCCCCchHHH-HHHhcC-HHHHHHhhcCCCHHHHHHHHHHHHHHcCC--chhHHHHHHhCCHHHHHHHHcCCCCH
Q 041050          121 QFRDSGNGQKAPITK-LFEQVG-LHKILSLLESEDANVRIHAVKVVANLAAE--EANQEKIVEAGGLSSLLMLLRSFEDE  196 (408)
Q Consensus       121 ~~l~~ls~~~~~~~~-l~~~~~-v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~--~~~~~~i~~~g~i~~L~~lL~~~~~~  196 (408)
                      ..+.++...++..+. +...+| +|.|+.+|++++++++..|+++|.||+..  +.++..+++.|+||+|+.+|..+.++
T Consensus       106 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~  185 (354)
T 3nmw_A          106 MALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE  185 (354)
T ss_dssp             HHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCH
Confidence            456677655554444 445555 99999999999999999999999999984  68999999999999999986445678


Q ss_pred             HHHHHHHHHHHHhccCChhhHHHHH-hcCcHHHHHHHhhcCCCH---HHHHHHHHHHHHHh----CCchhHHHHHhcccH
Q 041050          197 TIRRVAAGAIANLAMNAEANQELIM-AQGGISLLSTTAADAEDP---QTLRMVAGAIANLC----GNDKLQMKLRSEGGI  268 (408)
Q Consensus       197 ~v~~~A~~aL~nLa~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~---~v~~~a~~aL~nL~----~~~~~~~~i~~~g~l  268 (408)
                      .+++.|+++|+||+..+++++..|+ ..|++|.|+.+|....+.   .++..++++|.||+    .++++++.+++.|++
T Consensus       186 ~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i  265 (354)
T 3nmw_A          186 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL  265 (354)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHH
T ss_pred             HHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCH
Confidence            9999999999999995488999988 799999999999654432   58999999999998    489999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050          269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA  348 (408)
Q Consensus       269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a  348 (408)
                      +.|+.+|++++..++++|+++|+||+.                 ++++.+..+.+.|++|.|+.++++++..+++.|+++
T Consensus       266 ~~Lv~lL~~~~~~v~~~A~~aL~nLa~-----------------~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~a  328 (354)
T 3nmw_A          266 QTLLQHLKSHSLTIVSNACGTLWNLSA-----------------RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAA  328 (354)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHTS-----------------SCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence            999999999999999999999999996                 789999999999999999999999999999999999


Q ss_pred             HHHHccCchh
Q 041050          349 LCHLAQHEVN  358 (408)
Q Consensus       349 L~~La~~~~~  358 (408)
                      |.||+.+.+.
T Consensus       329 L~nL~~~~~~  338 (354)
T 3nmw_A          329 LRNLMANRPA  338 (354)
T ss_dssp             HHHHHTTCCG
T ss_pred             HHHHHcCCHH
Confidence            9999988443

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=7e-27  Score=217.17  Aligned_cols=234  Identities=22%  Similarity=0.325  Sum_probs=211.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      .++.++.+|.+++++++..|+++|.++.. .++++..+++.|++|.|+.+|.+ +++.++..|+++|+|++.+++.++..
T Consensus        13 ~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           13 ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             SHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             hHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            58999999999999999999999987665 78889999999999999999995 57999999999999999966999999


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhH-HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ-MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES  298 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~-~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~  298 (408)
                      +++.|+++.|+.+|. ++++.++..++++|+||+.++..+ ..+.+.|+++.|+.++.++++.++..|+++|+||+.   
T Consensus        92 i~~~g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---  167 (252)
T 4db8_A           92 VIDAGALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS---  167 (252)
T ss_dssp             HHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTT---
T ss_pred             HHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHc---
Confidence            999999999999994 578999999999999999888877 889999999999999999999999999999999997   


Q ss_pred             hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhc
Q 041050          299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRD  377 (408)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~  377 (408)
                                    +++..+..+.+.|+++.|+.++.++++.++..|+++|++++.+ ++....+++.|+++.|+.++.+
T Consensus       168 --------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  233 (252)
T 4db8_A          168 --------------GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH  233 (252)
T ss_dssp             --------------SCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred             --------------CChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCC
Confidence                          6778888889999999999999999999999999999999976 5666778899999999999986


Q ss_pred             CCHHHHHHHHHHHHhcc
Q 041050          378 CSREDIRSLAHRTLSSS  394 (408)
Q Consensus       378 ~~~~~~~~~A~~~L~~~  394 (408)
                      . +.+++..|.++|.+.
T Consensus       234 ~-~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          234 E-NEKIQKEAQEALEKL  249 (252)
T ss_dssp             S-SSHHHHTHHHHHHTT
T ss_pred             C-CHHHHHHHHHHHHHH
Confidence            5 446777777777553

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=6.2e-27  Score=240.91  Aligned_cols=253  Identities=16%  Similarity=0.244  Sum_probs=220.1

Q ss_pred             hhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC------
Q 041050          121 QFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS------  192 (408)
Q Consensus       121 ~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~------  192 (408)
                      +.+.++ ++..++.+.+++.|++|.|+.+|+++++++++.|+++|+||+. ++..+..+.+.|++++|+.+|..      
T Consensus       123 ~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~  202 (510)
T 3ul1_B          123 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL  202 (510)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS
T ss_pred             HHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhh
Confidence            346777 6777888899999999999999999999999999999999998 67889999999999988887742      


Q ss_pred             ----------------------------------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          193 ----------------------------------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       193 ----------------------------------------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                                                              +.++.++..|+|+|++|+.+++.....+.+.|+++.|+.+
T Consensus       203 ~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~l  282 (510)
T 3ul1_B          203 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL  282 (510)
T ss_dssp             CHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhh
Confidence                                                    2345667778888888888756677788899999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050          233 AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA  311 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~  311 (408)
                      | .+.++.++..++++|+|++ +++..+..+++.|+++.|+.++.++++.+++.|+|+|+||+.                
T Consensus       283 L-~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a----------------  345 (510)
T 3ul1_B          283 L-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA----------------  345 (510)
T ss_dssp             H-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT----------------
T ss_pred             h-cCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc----------------
Confidence            8 5688899999999999998 788888999999999999999999999999999999999997                


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050          312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~  389 (408)
                       ++++.+..+.+.|++|.|+.++.+++.+++..|+|+|+|++.+  .++...+++.|+++.|++++.+.+. .+...+.+
T Consensus       346 -~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~-~i~~~~L~  423 (510)
T 3ul1_B          346 -GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDT-KIIQVILD  423 (510)
T ss_dssp             -SCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCH-HHHHHHHH
T ss_pred             -CcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCH-HHHHHHHH
Confidence             8889999999999999999999999999999999999999974  5667788999999999999997654 45555555


Q ss_pred             HHh
Q 041050          390 TLS  392 (408)
Q Consensus       390 ~L~  392 (408)
                      +|.
T Consensus       424 aL~  426 (510)
T 3ul1_B          424 AIS  426 (510)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.95  E-value=6.8e-26  Score=233.36  Aligned_cols=246  Identities=18%  Similarity=0.296  Sum_probs=218.0

Q ss_pred             CchHHHHHHhcCHHHHHHhhcCCC-HHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050          130 KAPITKLFEQVGLHKILSLLESED-ANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA  207 (408)
Q Consensus       130 ~~~~~~l~~~~~v~~Ll~lL~s~~-~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~  207 (408)
                      +++...+++.|++|.|+.+|.+++ +.++..|+++|++++. +++++..+++.|++|.|+.+|.+ +++.++..|+++|+
T Consensus       107 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~-~~~~v~~~a~~aL~  185 (528)
T 4b8j_A          107 SPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGS-SSDDVREQAVWALG  185 (528)
T ss_dssp             SCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHH
T ss_pred             CchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcC-CCHHHHHHHHHHHH
Confidence            477889999999999999999876 9999999999999999 58899999999999999999995 68999999999999


Q ss_pred             HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHH
Q 041050          208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA  287 (408)
Q Consensus       208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~  287 (408)
                      ||+.+++.++..+.+.|+++.|+.++..+.++.++..++++|+||+.+..........|+++.|+.++.++++.++..|+
T Consensus       186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~  265 (528)
T 4b8j_A          186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDAC  265 (528)
T ss_dssp             HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            99998788999999999999999999777889999999999999995543334445589999999999999999999999


Q ss_pred             HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-chhHHHHHhCC
Q 041050          288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGG  366 (408)
Q Consensus       288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~~~~~l~~~g  366 (408)
                      ++|.+|+.                 +.+.....+.+.|+++.|+.++.++++.++..|+++|++++.+ +.....+++.|
T Consensus       266 ~aL~~l~~-----------------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~  328 (528)
T 4b8j_A          266 WALSYLSD-----------------GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ  328 (528)
T ss_dssp             HHHHHHTS-----------------SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT
T ss_pred             HHHHHHHc-----------------CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999996                 6666677888999999999999999999999999999999997 44556677999


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          367 ALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       367 ~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      +++.|+.++.+.....++..|.++|.+
T Consensus       329 ~l~~L~~lL~~~~~~~v~~~A~~~L~n  355 (528)
T 4b8j_A          329 ALPCLLSLLTQNLKKSIKKEACWTISN  355 (528)
T ss_dssp             HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            999999999976456666667666544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=1.2e-26  Score=247.32  Aligned_cols=252  Identities=14%  Similarity=0.121  Sum_probs=210.8

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA  213 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~  213 (408)
                      +.+++.|++|.|+.+++++++.+|..|+|+|+||+.+++++..+++.|++|+|+.+|.+ .++..++.|+|+|+||+.+.
T Consensus       489 ~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s-~~~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          489 TVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALE-GTEKGKRHATQALARIGITI  567 (810)
T ss_dssp             HHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcc-CCHHHHHHHHHHHHHHhcCC
Confidence            68899999999999999999999999999999999998999999999999999999985 57789999999999998752


Q ss_pred             hhhHHHH---HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050          214 EANQELI---MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG  289 (408)
Q Consensus       214 ~~~~~~i---~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a  289 (408)
                      + ....+   ...|++|+|+.+|....+......++++|.||+ .++.++..+++.|+++.|+.++.++++.+++.|+++
T Consensus       568 ~-p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~  646 (810)
T 3now_A          568 N-PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC  646 (810)
T ss_dssp             C-HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred             C-hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence            2 22111   124699999999964445555678999999999 557889999999999999999999999999999999


Q ss_pred             HHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-cCcHHHHHHhccCCCHHHHHHHHHHHHHHcc-CchhHHHHHh-CC
Q 041050          290 IANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-DGALPWIVQNANNEAAPIRRHIELALCHLAQ-HEVNAREMIS-GG  366 (408)
Q Consensus       290 L~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~-~~~~~~~l~~-~g  366 (408)
                      |+||+.                  +++.+..+.+ .|+++.|+.++.+++.+++..|+|+|+|++. ++...+.+++ .|
T Consensus       647 L~NLa~------------------~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g  708 (810)
T 3now_A          647 LCNLVM------------------SEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIAS  708 (810)
T ss_dssp             HHHHTT------------------SHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTT
T ss_pred             HHHHhC------------------ChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence            999994                  4556666775 7899999999999999999999999999999 5777888888 99


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHH----hccHhhHHHHHhhhh
Q 041050          367 ALWELVRISRDCSREDIRSLAHRTL----SSSLTFRAEMRRLRI  406 (408)
Q Consensus       367 ~i~~L~~ll~~~~~~~~~~~A~~~L----~~~~~~~~~~~~~~~  406 (408)
                      +++.|++++.+.+. .++..|.+++    ..++.....+...|+
T Consensus       709 ~I~~Lv~LL~s~d~-~vq~~A~~aL~NL~~~s~e~~~~l~e~G~  751 (810)
T 3now_A          709 WLDILHTLIANPSP-AVQHRGIVIILNMINAGEEIAKKLFETDI  751 (810)
T ss_dssp             HHHHHHHHHTCSSH-HHHHHHHHHHHHHHTTCHHHHHHHHTSTH
T ss_pred             CHHHHHHHHCCCCH-HHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            99999999996544 4444555443    444555666666553

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=1.3e-26  Score=234.27  Aligned_cols=268  Identities=19%  Similarity=0.212  Sum_probs=215.1

Q ss_pred             hhhhhc-CCCCchHHHHHHhcCH----------HHHHHhhcCCC--HH-----HHH-------HHHHHHHHHcCCchhHH
Q 041050          121 QFRDSG-NGQKAPITKLFEQVGL----------HKILSLLESED--AN-----VRI-------HAVKVVANLAAEEANQE  175 (408)
Q Consensus       121 ~~l~~l-s~~~~~~~~l~~~~~v----------~~Ll~lL~s~~--~~-----v~~-------~A~~aL~nLa~~~~~~~  175 (408)
                      +-+.++ +++.+..+...+.+.+          +.+++++.+.+  .+     +++       +|+|+|+|++.++++|.
T Consensus       104 ~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~  183 (458)
T 3nmz_A          104 AALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH  183 (458)
T ss_dssp             HHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHH
Confidence            344555 4565555665566655          56667776542  22     444       99999999999999999


Q ss_pred             HHHHhCCHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCc-HHHHHHHhhcCCCHHHHHH
Q 041050          176 KIVEAGGLSSLLMLLRS----------FEDETIRRVAAGAIANLAMNAEANQELIMAQGG-ISLLSTTAADAEDPQTLRM  244 (408)
Q Consensus       176 ~i~~~g~i~~L~~lL~~----------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~-i~~Lv~lL~~~~~~~v~~~  244 (408)
                      .|++.||+++|+.+|..          +.++.+++.|+|+|.||+.+++.++..+...+| +|.|+.+| .+++++++..
T Consensus       184 ~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~  262 (458)
T 3nmz_A          184 AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQV  262 (458)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHH
Confidence            99999999999999942          134778999999999999985667777876656 99999999 4688999999


Q ss_pred             HHHHHHHHhC--CchhHHHHHhcccHHHHHHhh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHH
Q 041050          245 VAGAIANLCG--NDKLQMKLRSEGGIRALLGMV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLL  321 (408)
Q Consensus       245 a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i  321 (408)
                      ++++|.||+.  ++.++..+.+.|+++.|+.+| +++++.+++.|+++|+||+.                 ++++.+..+
T Consensus       263 A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~-----------------~~~~nk~~I  325 (458)
T 3nmz_A          263 IASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA-----------------HCTENKADI  325 (458)
T ss_dssp             HHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH-----------------HCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc-----------------CCHHHHHHH
Confidence            9999999995  578999999999999999975 67789999999999999995                 466667777


Q ss_pred             H-hcCcHHHHHHhccCCCH----HHHHHHHHHHHHHcc----CchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHH--HH
Q 041050          322 I-EDGALPWIVQNANNEAA----PIRRHIELALCHLAQ----HEVNAREMISGGALWELVRISRDCSREDIRSLAH--RT  390 (408)
Q Consensus       322 ~-~~g~l~~Lv~lL~~~~~----~v~~~a~~aL~~La~----~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~--~~  390 (408)
                      . ..|++|.|+.++.++++    +++..|+++|+||+.    +++++..+++.|+++.|+.++.+.+.+....++.  .-
T Consensus       326 ~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~n  405 (458)
T 3nmz_A          326 CAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWN  405 (458)
T ss_dssp             HHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            7 78999999999987654    499999999999995    6778888889999999999999766554444433  33


Q ss_pred             Hh-ccHhhHHHHHhhhh
Q 041050          391 LS-SSLTFRAEMRRLRI  406 (408)
Q Consensus       391 L~-~~~~~~~~~~~~~~  406 (408)
                      +. .++..+..+.+.|+
T Consensus       406 La~~~~~~~~~i~~~G~  422 (458)
T 3nmz_A          406 LSARNPKDQEALWDMGA  422 (458)
T ss_dssp             HHSSCHHHHHHHHHHTH
T ss_pred             HHcCCHHHHHHHHHCCC
Confidence            33 46788888888875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=6.6e-26  Score=230.17  Aligned_cols=260  Identities=18%  Similarity=0.228  Sum_probs=203.1

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      .+|.++.+|++++++++..|+++|.+|+. ++.++..+++.|++|.|+.+|.+ +++.++..|+++|.||+.++++++..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            58999999999999999999999999998 56678899999999999999994 78899999999999999977999999


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc--------C--------CCHHHH
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR--------C--------GHPDVL  283 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~--------~--------~~~~v~  283 (408)
                      |++.||+|.|+.+|.++.++++++.++|+|+||+.++.++..+++ |+++.|+.++.        +        .++.++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999996578899999999999999988999999999 99999999992        2        356788


Q ss_pred             HHHHHHHHHhhccchhhhhHHH---hh---hhhccC--------------------------------------------
Q 041050          284 SQVARGIANFAKCESRAATQVR---FI---RCTATG--------------------------------------------  313 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~~~~~~~~---~~---i~~~~~--------------------------------------------  313 (408)
                      +.|+|+|+||+.+ ++.+..+.   |.   +..+..                                            
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            8999999999964 44433333   21   111000                                            


Q ss_pred             --------------------------------ChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh--
Q 041050          314 --------------------------------VKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN--  358 (408)
Q Consensus       314 --------------------------------~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~--  358 (408)
                                                      ++.+.+.+++.|+++.|+.++.+ +++.+++.|+|+|+|++.+...  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                            11122334455667778887754 4688999999999999986422  


Q ss_pred             --H-HHHH-hCCcHHHHHHHHhcCCHHHHHHHHH--HHHhccHhhHHHHHh
Q 041050          359 --A-REMI-SGGALWELVRISRDCSREDIRSLAH--RTLSSSLTFRAEMRR  403 (408)
Q Consensus       359 --~-~~l~-~~g~i~~L~~ll~~~~~~~~~~~A~--~~L~~~~~~~~~~~~  403 (408)
                        . +.++ +.|+++.|++++.+.+.+-.+.++.  .-++.++..+..+..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~  370 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN  370 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              1 3344 7999999999999776544444443  334455555555544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=6.1e-27  Score=249.61  Aligned_cols=259  Identities=14%  Similarity=0.125  Sum_probs=222.2

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHH---HHhCCHHHHHHHHcCCCC
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKI---VEAGGLSSLLMLLRSFED  195 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i---~~~g~i~~L~~lL~~~~~  195 (408)
                      ..+.+-++++..++...+++.|++|+|+.+|+++++..+..|+++|.||+.+......+   ...|++|+|+.+|.++.+
T Consensus       515 Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~  594 (810)
T 3now_A          515 IARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCT  594 (810)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCc
Confidence            35566777777788889999999999999999999999999999999998732222111   124589999999985445


Q ss_pred             HHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHh
Q 041050          196 ETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGM  274 (408)
Q Consensus       196 ~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~l  274 (408)
                      ...+..|+++|.||+..++.++..+++.||++.|+.+|. ++++.+++.|+++|+||+.+++.+..+.+ .|+++.|+.+
T Consensus       595 ~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~-s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~L  673 (810)
T 3now_A          595 ALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM-EDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALL  673 (810)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH-SCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHH
Confidence            555668999999999987899999999999999999995 56789999999999999988888888885 7899999999


Q ss_pred             hcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh-cCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          275 VRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE-DGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       275 L~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~-~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                      +.+++..+++.|+|+|+||+.                 +++...+.+++ .|++|.|+.++.+++.+++..|+|+|+|++
T Consensus       674 L~s~d~~vq~~Aa~ALanLt~-----------------~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~  736 (810)
T 3now_A          674 CEDEDEETATACAGALAIITS-----------------VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI  736 (810)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHH-----------------HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHhC-----------------CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999996                 67888888888 899999999999999999999999999998


Q ss_pred             cC-chhHHHHHhCCcHHHHHHHHhcC--CHHHHHHHHHHHHhccH
Q 041050          354 QH-EVNAREMISGGALWELVRISRDC--SREDIRSLAHRTLSSSL  395 (408)
Q Consensus       354 ~~-~~~~~~l~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~~~  395 (408)
                      .+ .+++..+++.|+++.|+++++.+  .+..+...|..+|..-.
T Consensus       737 ~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll  781 (810)
T 3now_A          737 NAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAE  781 (810)
T ss_dssp             TTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHH
Confidence            75 56788899999999999999865  35568888887776543

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=6.8e-26  Score=210.51  Aligned_cols=207  Identities=23%  Similarity=0.352  Sum_probs=191.1

Q ss_pred             CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050          129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA  207 (408)
Q Consensus       129 ~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~  207 (408)
                      ..++...+++.|++|.|+.+|+++++.++..|+++|+|++. +++++..+++.|+++.|+.+|.+ +++.++..|+++|+
T Consensus        43 ~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~  121 (252)
T 4db8_A           43 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALS  121 (252)
T ss_dssp             HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHH
T ss_pred             CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            45566789999999999999999999999999999999998 79999999999999999999995 68999999999999


Q ss_pred             HhccCChhhH-HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHH
Q 041050          208 NLAMNAEANQ-ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQ  285 (408)
Q Consensus       208 nLa~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~  285 (408)
                      ||+.+ +..+ ..+++.|+++.|+.+| .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++++.++..
T Consensus       122 ~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  199 (252)
T 4db8_A          122 NIASG-GNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE  199 (252)
T ss_dssp             HHTTS-CHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred             HhhcC-CchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHH
Confidence            99999 6666 8999999999999999 5678999999999999999 57788888899999999999999999999999


Q ss_pred             HHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          286 VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       286 a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      |+++|+||+.                 +++..+..+.+.|+++.|+.++.+++++++..|+++|++|+.+
T Consensus       200 a~~~L~~l~~-----------------~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          200 ALWALSNIAS-----------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  252 (252)
T ss_dssp             HHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC--
T ss_pred             HHHHHHHHhc-----------------CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhcC
Confidence            9999999996                 7888888999999999999999999999999999999999863

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.94  E-value=2e-25  Score=201.76  Aligned_cols=201  Identities=22%  Similarity=0.333  Sum_probs=183.1

Q ss_pred             HHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       136 l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      -...++.+.|+.+|++++++++..|+++|.+++. ++.++..+++.|+++.|+.+|.+ +++.++..|+++|+||+.+++
T Consensus         8 ~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~   86 (210)
T 4db6_A            8 HHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIASGGN   86 (210)
T ss_dssp             -----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHTTSCH
T ss_pred             ccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCc
Confidence            3456678999999999999999999999999995 78999999999999999999995 689999999999999997659


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      .++..+++.|+++.|+.+| .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++++.++..|+++|.||
T Consensus        87 ~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  165 (210)
T 4db6_A           87 EQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (210)
T ss_dssp             HHHHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998 5678999999999999999 6778888899999999999999999999999999999999


Q ss_pred             hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      +.                 ++++.+..+.+.|+++.|++++.++++++++.|+++|.+|+.+
T Consensus       166 ~~-----------------~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          166 AS-----------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HT-----------------SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             Hc-----------------CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            96                 6688888999999999999999999999999999999999864

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.94  E-value=3.3e-25  Score=229.11  Aligned_cols=269  Identities=18%  Similarity=0.225  Sum_probs=215.4

Q ss_pred             hhhhhhcCC--CCchHHHHHHhcCHHHHHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHc-----
Q 041050          120 SQFRDSGNG--QKAPITKLFEQVGLHKILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLR-----  191 (408)
Q Consensus       120 ~~~l~~ls~--~~~~~~~l~~~~~v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~-----  191 (408)
                      ..-+.+++.  ..++...+++.|+||.|+.+|++ .+.++++.|+++|+||+..+.++..|++ +|+|.|+.++.     
T Consensus       111 a~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg  189 (584)
T 3l6x_A          111 CGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSG  189 (584)
T ss_dssp             HHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHC
T ss_pred             HHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccc
Confidence            444577765  36888899999999999999996 6889999999999999999999999996 58999999871     


Q ss_pred             ------------CCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH-HHHHHHhh------------------------
Q 041050          192 ------------SFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI-SLLSTTAA------------------------  234 (408)
Q Consensus       192 ------------~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i-~~Lv~lL~------------------------  234 (408)
                                  +..++.++..|+++|.||+.+++.++..+++.+|+ +.|+.++.                        
T Consensus       190 ~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs  269 (584)
T 3l6x_A          190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLS  269 (584)
T ss_dssp             CC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhh
Confidence                        12367999999999999999867778888876554 45555432                        


Q ss_pred             -------------------------------------------------cCCCHHHHHHHHHHHHHHh-CC----chhHH
Q 041050          235 -------------------------------------------------DAEDPQTLRMVAGAIANLC-GN----DKLQM  260 (408)
Q Consensus       235 -------------------------------------------------~~~~~~v~~~a~~aL~nL~-~~----~~~~~  260 (408)
                                                                       .+..+.+++.|+++|+||| ++    ..++.
T Consensus       270 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~  349 (584)
T 3l6x_A          270 YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRS  349 (584)
T ss_dssp             TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHH
T ss_pred             ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHH
Confidence                                                             2345677788889999997 33    23455


Q ss_pred             HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC---
Q 041050          261 KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE---  337 (408)
Q Consensus       261 ~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~---  337 (408)
                      .+.+.++++.|+.+|.++++.+++.|+++|+||+.                  ++..+..| ..|++|.|+++|.++   
T Consensus       350 ~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~------------------~~~~~~~I-~~g~ip~LV~LL~~~~~~  410 (584)
T 3l6x_A          350 ALRQEKALSAIADLLTNEHERVVKAASGALRNLAV------------------DARNKELI-GKHAIPNLVKNLPGGQQN  410 (584)
T ss_dssp             HHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHT------------------TCSCHHHH-HHHHHHHHHHTSSSSSCS
T ss_pred             HHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhC------------------ChhHHHHH-HhCCHHHHHHHhcCCccc
Confidence            66678999999999999999999999999999995                  34455545 779999999999876   


Q ss_pred             -----CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcC-CHHHHHHHHH---HHHhccHhhHHHHHhhhhc
Q 041050          338 -----AAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDC-SREDIRSLAH---RTLSSSLTFRAEMRRLRIE  407 (408)
Q Consensus       338 -----~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~-~~~~~~~~A~---~~L~~~~~~~~~~~~~~~~  407 (408)
                           ..++...|+++|+|++.. +++++.+++.|+++.|+.++++. ..+.+.+.|.   ..+-.+...+..+++.|..
T Consensus       411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~  490 (584)
T 3l6x_A          411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWK  490 (584)
T ss_dssp             GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCC
T ss_pred             ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCC
Confidence                 468899999999999765 77888889999999999999975 2344444554   5566777788888888765


Q ss_pred             C
Q 041050          408 F  408 (408)
Q Consensus       408 ~  408 (408)
                      |
T Consensus       491 ~  491 (584)
T 3l6x_A          491 K  491 (584)
T ss_dssp             G
T ss_pred             H
Confidence            3

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=5.6e-25  Score=203.29  Aligned_cols=216  Identities=24%  Similarity=0.396  Sum_probs=196.9

Q ss_pred             hhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      .+.++.. ..++...+++.|+++.|+.++++++++++..|+++|++|+.. +.++..+++.|+++.|+.+|.+ +++.++
T Consensus        25 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~-~~~~v~  103 (252)
T 4hxt_A           25 DLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TDSEVQ  103 (252)
T ss_dssp             HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SSHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC-CCHHHH
Confidence            3444433 335778889999999999999999999999999999999995 9999999999999999999994 789999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      ..|+++|+||+..++.++..+++.|+++.|+.++ .++++.++..++++|+||+ .++..+..+.+.|+++.|+.++.++
T Consensus       104 ~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~  182 (252)
T 4hxt_A          104 KEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST  182 (252)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC
Confidence            9999999999965599999999999999999998 5678999999999999999 5677778899999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                      ++.++..|+++|.|++.                 +++..+..+.+.|+++.|+.++++++++++..|+++|+|++.+.
T Consensus       183 ~~~v~~~a~~~L~~l~~-----------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          183 DSEVQKEAARALANIAS-----------------GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             CHHHHHHHHHHHHHHTT-----------------SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence            99999999999999996                 78888889999999999999999999999999999999999764

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=206.69  Aligned_cols=196  Identities=19%  Similarity=0.286  Sum_probs=176.5

Q ss_pred             CHHHHHHhhcCCCH--HHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          141 GLHKILSLLESEDA--NVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~--~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      .+|.++++|.++++  +++..|+++|.+|+. +++++..|++.||||+|+.+|.+ +++.++..|+|+|.||+.++++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHhCCHHHH
Confidence            48999999999887  899999999999997 88999999999999999999995 789999999999999999669999


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhc----------------CCCHH
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVR----------------CGHPD  281 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~----------------~~~~~  281 (408)
                      ..|++.||||.|+.+|.++.++++++.++++|+||+..+.++..|.+ +++++|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999997677899999999999999999999999987 47899988652                13679


Q ss_pred             HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhc-CcHHHHHHhccCC------CHHHHHHHHHHHHHHcc
Q 041050          282 VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIED-GALPWIVQNANNE------AAPIRRHIELALCHLAQ  354 (408)
Q Consensus       282 v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~-g~l~~Lv~lL~~~------~~~v~~~a~~aL~~La~  354 (408)
                      ++.+|+++|+||+.                 .+++.|..|.+. |+|+.|+.++++.      +...+++|+.+|.||+.
T Consensus       167 v~~na~~~L~nLss-----------------~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          167 IFYNVTGCLRNMSS-----------------AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHHTT-----------------SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhc-----------------CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            99999999999996                 778899999975 6789999999752      66789999999999987


Q ss_pred             C
Q 041050          355 H  355 (408)
Q Consensus       355 ~  355 (408)
                      .
T Consensus       230 ~  230 (233)
T 3tt9_A          230 Q  230 (233)
T ss_dssp             C
T ss_pred             h
Confidence            5

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.94  E-value=7.2e-24  Score=218.54  Aligned_cols=244  Identities=15%  Similarity=0.236  Sum_probs=215.0

Q ss_pred             CchHHHHHHhcCHHHHHHhhcCC-CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050          130 KAPITKLFEQVGLHKILSLLESE-DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA  207 (408)
Q Consensus       130 ~~~~~~l~~~~~v~~Ll~lL~s~-~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~  207 (408)
                      .+++..+++.|++|.|+.+|.++ ++.++..|+++|++++. .+..+..+++.|++|.|+.+|.+ +++.++..|+++|+
T Consensus       120 ~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~vr~~A~~aL~  198 (530)
T 1wa5_B          120 RPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALG  198 (530)
T ss_dssp             SCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHH
T ss_pred             CccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence            56678889999999999999987 89999999999999998 67888899999999999999995 68999999999999


Q ss_pred             HhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-hhHHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          208 NLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND-KLQMKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                      ||+.+++.++..++..|+++.|+.++.+ .++.++..++++|+||+.+. .........++++.|+.++.++++.++..+
T Consensus       199 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a  277 (530)
T 1wa5_B          199 NVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA  277 (530)
T ss_dssp             HHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred             HHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence            9999878999999999999999999954 88999999999999999543 444455568999999999999999999999


Q ss_pred             HHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc-hhHHHHHhC
Q 041050          287 ARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE-VNAREMISG  365 (408)
Q Consensus       287 ~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~  365 (408)
                      +++|.+|+.                 +.++....+.+.|+++.|+.++.++++.++..|+++|++++.+. .....+++.
T Consensus       278 ~~~L~~L~~-----------------~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  340 (530)
T 1wa5_B          278 CWAISYLSD-----------------GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINA  340 (530)
T ss_dssp             HHHHHHHHS-----------------SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred             HHHHHHHhC-----------------CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            999999996                 66777788889999999999999999999999999999999874 455667799


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          366 GALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       366 g~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      |+++.|+.++.+. +..++..|.++|.+
T Consensus       341 ~~l~~L~~lL~~~-~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          341 GVLPALRLLLSSP-KENIKKEACWTISN  367 (530)
T ss_dssp             THHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence            9999999999976 45566666666544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=3e-24  Score=221.11  Aligned_cols=309  Identities=17%  Similarity=0.198  Sum_probs=243.2

Q ss_pred             hhhHHHHHHHHhhhhhhhHHHHH-HHhhhhccc-----------c----cccccccc------cchhhhhhcCC-CCchH
Q 041050           77 RKLEEEIVILRSQLLQLTFEADQ-MQKCLERGE-----------F----GNTFTGLD------KHSQFRDSGNG-QKAPI  133 (408)
Q Consensus        77 ~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~-----------~----~~~~~~~~------~~~~~l~~ls~-~~~~~  133 (408)
                      +.+...+..|.+..++....+.+ .++.+....           .    ...+...+      .....+.++.. ..++.
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            45666777777776666666655 445444321           1    11221111      12334455533 45667


Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  212 (408)
                      ..+++.|++|.|+.+|.++++.++..|+++|+||+. .+.++..+.+.|++++|+.+|..+.++.++..|+|+|+||+..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            778888999999999999999999999999999998 5788999999999999999996567899999999999999998


Q ss_pred             ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                       ..........|+++.|+.++ .++++.++..++++|+||+. ++.....+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus       234 -~~~~~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~  311 (528)
T 4b8j_A          234 -KPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG  311 (528)
T ss_dssp             -SSCCCHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             -CCCCcHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence             44445556689999999998 56889999999999999994 4455578889999999999999999999999999999


Q ss_pred             HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHH
Q 041050          292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQH-EVNAREMISGGALW  369 (408)
Q Consensus       292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~  369 (408)
                      ||+.                 +++.....+++.|++|.|+.++.++ ++.++..|+|+|+|++.+ ++....+++.|+++
T Consensus       312 nl~~-----------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~  374 (528)
T 4b8j_A          312 NIVT-----------------GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG  374 (528)
T ss_dssp             HHTT-----------------SCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHH
T ss_pred             HHHc-----------------CCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Confidence            9997                 7888888899999999999999998 999999999999999986 45567788999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhc-----cHhhHHHHHhhh
Q 041050          370 ELVRISRDCSREDIRSLAHRTLSS-----SLTFRAEMRRLR  405 (408)
Q Consensus       370 ~L~~ll~~~~~~~~~~~A~~~L~~-----~~~~~~~~~~~~  405 (408)
                      .|+.++.+.+ ..++..|.++|.+     .+.....+...|
T Consensus       375 ~L~~lL~~~~-~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~  414 (528)
T 4b8j_A          375 PLVNLLQTAE-FDIKKEAAWAISNATSGGSHDQIKYLVSEG  414 (528)
T ss_dssp             HHHHHHHHSC-HHHHHHHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred             HHHHHHhcCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHCC
Confidence            9999999764 4455555544432     344444444433

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.93  E-value=1.8e-24  Score=206.95  Aligned_cols=236  Identities=17%  Similarity=0.166  Sum_probs=198.1

Q ss_pred             HHHHHHhhcCCC------------HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHH-HHcCCCCHHHHHHHHHHHHH
Q 041050          142 LHKILSLLESED------------ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLM-LLRSFEDETIRRVAAGAIAN  208 (408)
Q Consensus       142 v~~Ll~lL~s~~------------~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~-lL~~~~~~~v~~~A~~aL~n  208 (408)
                      ++..+..|.++.            .+-+..|+..|.+++.+.+++..+++.||+|+|+. +|. ++++.++..|+|+|+|
T Consensus        30 mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~-s~~~~vr~~Aa~~Lg~  108 (296)
T 1xqr_A           30 MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLE-AGAAGLRWRAAQLIGT  108 (296)
T ss_dssp             HHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTT-CSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence            466677777652            35788899999999998889999999999999999 998 4789999999999999


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHH
Q 041050          209 LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVA  287 (408)
Q Consensus       209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~  287 (408)
                      ++.+++..|..+++.||+|.|+.+|.+++++.+++.|+|+|+||+ +++...+.+.+.|+++.|+.+|+++++.++..|+
T Consensus       109 ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~  188 (296)
T 1xqr_A          109 CSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSA  188 (296)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHH
Confidence            999889999999999999999999976668899999999999999 6777788899999999999999999999999999


Q ss_pred             HHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC-
Q 041050          288 RGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG-  366 (408)
Q Consensus       288 ~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g-  366 (408)
                      |+|+||+.                 ++++.+..+++.|+++.|+.+|.++++.++..|+.+|++|+.+.......+..+ 
T Consensus       189 ~aLs~L~~-----------------~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~  251 (296)
T 1xqr_A          189 FLLQNLLV-----------------GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE  251 (296)
T ss_dssp             HHHHHHHH-----------------HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred             HHHHHHHh-----------------CChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccH
Confidence            99999997                 788889999999999999999999999999999999999999854433333322 


Q ss_pred             --cHHHH---HHHHhcCC-HHHHHHHHHHHHhccH
Q 041050          367 --ALWEL---VRISRDCS-REDIRSLAHRTLSSSL  395 (408)
Q Consensus       367 --~i~~L---~~ll~~~~-~~~~~~~A~~~L~~~~  395 (408)
                        ....|   ++-++..+ .+++...|.+++..++
T Consensus       252 ~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          252 LGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             GCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence              22222   22233232 4567777887776544

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.93  E-value=1.5e-23  Score=214.90  Aligned_cols=284  Identities=15%  Similarity=0.155  Sum_probs=237.6

Q ss_pred             hhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          121 QFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       121 ~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      ..+.+++...++...+++.|++|.|+.+|+++++.++..|+++|.||+. ++..+..+++.|++|.|+.++.+ +++.++
T Consensus        82 ~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~-~~~~~~  160 (529)
T 1jdh_A           82 GTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFL  160 (529)
T ss_dssp             HHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHHH
T ss_pred             HHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhc-CCHHHH
Confidence            3445566666688889999999999999999999999999999999998 57788889999999999999995 688999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGH  279 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~  279 (408)
                      ..++.+|.+++..+++++..+.+.|+++.|+.++.+.+++.....++.+|+||+.++.++..+.+.|+++.|+.++.+++
T Consensus       161 ~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~  240 (529)
T 1jdh_A          161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS  240 (529)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCC
Confidence            99999999999876999999999999999999998877788888999999999999999999999999999999999889


Q ss_pred             HHHHHHHHHHHHHhhcc---------------------chhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccC-
Q 041050          280 PDVLSQVARGIANFAKC---------------------ESRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANN-  336 (408)
Q Consensus       280 ~~v~~~a~~aL~nL~~~---------------------~~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~-  336 (408)
                      +.++..++|+|.||+..                     +++.+....+++++++. +++.+..+.+.|+++.|++++.+ 
T Consensus       241 ~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~  320 (529)
T 1jdh_A          241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA  320 (529)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHcc
Confidence            99999999999999853                     12223334455666654 46799999999999999999975 


Q ss_pred             -CCHHHHHHHHHHHHHHccCc-h---hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH---hccHhhHHHHHhhh
Q 041050          337 -EAAPIRRHIELALCHLAQHE-V---NAREMISGGALWELVRISRDCSREDIRSLAHRTL---SSSLTFRAEMRRLR  405 (408)
Q Consensus       337 -~~~~v~~~a~~aL~~La~~~-~---~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L---~~~~~~~~~~~~~~  405 (408)
                       ++++++..|+++|+|++.+. +   .+..+++.|+++.|++++.+...+.++..|.++|   ...+..+..+...|
T Consensus       321 ~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~  397 (529)
T 1jdh_A          321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG  397 (529)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcC
Confidence             34899999999999999863 2   3567889999999999999876556666666554   34455555555554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=4.3e-23  Score=206.90  Aligned_cols=243  Identities=16%  Similarity=0.237  Sum_probs=211.0

Q ss_pred             CchHHHHHHh-cCHHHHHHhhcCC-CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHH
Q 041050          130 KAPITKLFEQ-VGLHKILSLLESE-DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAI  206 (408)
Q Consensus       130 ~~~~~~l~~~-~~v~~Ll~lL~s~-~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL  206 (408)
                      ++..+.+++. |++|.|+.+|+++ ++.+|..|+++|.+++. ++++...+++.|++|.|+.+|.+ +++.++..|+++|
T Consensus        53 ~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~vr~~a~~~L  131 (450)
T 2jdq_A           53 NPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSS-EFEDVQEQAVWAL  131 (450)
T ss_dssp             SCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHH
T ss_pred             CCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcC-CCHHHHHHHHHHH
Confidence            4455678887 8899999999988 89999999999999998 67788888899999999999995 6899999999999


Q ss_pred             HHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHHhhcCCCHHHHH
Q 041050          207 ANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLGMVRCGHPDVLS  284 (408)
Q Consensus       207 ~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~lL~~~~~~v~~  284 (408)
                      +|++.+++..+..+++.|+++.|+.++.++.++.++..++++|+||+.+  +.....+. .++++.|+.++.++++.++.
T Consensus       132 ~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~  210 (450)
T 2jdq_A          132 GNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLA  210 (450)
T ss_dssp             HHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHH
T ss_pred             HHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHH
Confidence            9999987889999999999999999996567899999999999999943  34333333 78999999999999999999


Q ss_pred             HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh-HHHHH
Q 041050          285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN-AREMI  363 (408)
Q Consensus       285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~-~~~l~  363 (408)
                      .++++|.+|+.                 +.++....+.+.|++|.|+.++.++++.++..|+++|++++.+.+. ...++
T Consensus       211 ~a~~~L~~l~~-----------------~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  273 (450)
T 2jdq_A          211 DACWALSYLSD-----------------GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVIL  273 (450)
T ss_dssp             HHHHHHHHHTS-----------------SSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHHHC-----------------CCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHH
Confidence            99999999996                 5666777788999999999999999999999999999999998554 45577


Q ss_pred             hCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          364 SGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       364 ~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      +.|+++.|+.++.++ +..++..|.++|.
T Consensus       274 ~~~~l~~L~~ll~~~-~~~vr~~a~~~L~  301 (450)
T 2jdq_A          274 NCSALQSLLHLLSSP-KESIKKEACWTIS  301 (450)
T ss_dssp             TTTHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred             HCccHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence            899999999999975 4556666666554

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=8.8e-23  Score=204.67  Aligned_cols=252  Identities=17%  Similarity=0.185  Sum_probs=214.2

Q ss_pred             hhhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050          121 QFRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI  198 (408)
Q Consensus       121 ~~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v  198 (408)
                      ..+.++. +..++.+.+++.|++|.|+.+|+++++.+|..|+++|++++. .+..+..+++.|+++.|+.++.++.++.+
T Consensus        87 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v  166 (450)
T 2jdq_A           87 WVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTM  166 (450)
T ss_dssp             HHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHH
T ss_pred             HHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHH
Confidence            3444443 344566778888999999999999999999999999999998 56789999999999999999986568999


Q ss_pred             HHHHHHHHHHhccCC-hhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhc
Q 041050          199 RRVAAGAIANLAMNA-EANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVR  276 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~  276 (408)
                      +..|+++|+||+.+. +.....++ .+++|.|+.++ .++++.++..++++|.||+. .+.....+.+.|+++.|+.++.
T Consensus       167 ~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~  244 (450)
T 2jdq_A          167 TRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM  244 (450)
T ss_dssp             HHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC
Confidence            999999999999874 33333333 78999999998 56788999999999999994 5577778888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050          277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-  355 (408)
Q Consensus       277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-  355 (408)
                      ++++.++..|+++|++++.                 +++.....+.+.|+++.|+.++.++++.++..|+++|++++.+ 
T Consensus       245 ~~~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~  307 (450)
T 2jdq_A          245 HNDYKVVSPALRAVGNIVT-----------------GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN  307 (450)
T ss_dssp             CSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred             CCchhHHHHHHHHHHHHhh-----------------CChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999997                 6777777888999999999999999999999999999999986 


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      ++....+++.|+++.|+.++.+.+. +++..|.++|.
T Consensus       308 ~~~~~~~~~~~~l~~L~~~l~~~~~-~v~~~a~~~L~  343 (450)
T 2jdq_A          308 RAQIQTVIDANIFPALISILQTAEF-RTRKEAAWAIT  343 (450)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHSCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Confidence            5566778899999999999997654 45555555543

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=8.3e-24  Score=216.71  Aligned_cols=252  Identities=21%  Similarity=0.235  Sum_probs=206.1

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChh--
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEA--  215 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~--  215 (408)
                      +.+|.|+.++.+++++++..|+++|+||+. +++++..+.+.|+++.|+.+|.+. +++.++..|+++|+||+.+++.  
T Consensus       266 ~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~  345 (529)
T 1jdh_A          266 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE  345 (529)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHH
Confidence            345666677777888999999999999988 567999999999999999999752 3489999999999999986433  


Q ss_pred             -hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--
Q 041050          216 -NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN--  292 (408)
Q Consensus       216 -~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n--  292 (408)
                       .+..+.+.|+++.|+.+|.+..++.++..++++|+|++.++.++..+.+.|+++.|+.++.++++++++.|+|++.|  
T Consensus       346 ~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~  425 (529)
T 1jdh_A          346 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ  425 (529)
T ss_dssp             HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchh
Confidence             57889999999999999966556799999999999999888889999999999999999998999999999999999  


Q ss_pred             hhccc--hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHH
Q 041050          293 FAKCE--SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWE  370 (408)
Q Consensus       293 L~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~  370 (408)
                      +....  .+......+++++++.+++.+..+.+.|+++.|+.++.+++++++..++++|++++.+++....+.+.|+++.
T Consensus       426 ~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~  505 (529)
T 1jdh_A          426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP  505 (529)
T ss_dssp             CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHH
T ss_pred             hhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHH
Confidence            43211  1112234467888888999999999999999999999999999999999999999988888888889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 041050          371 LVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       371 L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      |..++.+ .+++++..|.++|.
T Consensus       506 L~~l~~~-~~~~v~~~a~~aL~  526 (529)
T 1jdh_A          506 LTELLHS-RNEGVATYAAAVLF  526 (529)
T ss_dssp             HHHGGGC-SSHHHHHHHHHHHH
T ss_pred             HHHHhcC-CCHHHHHHHHHHHH
Confidence            9999885 45567777777664

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=7.3e-23  Score=211.00  Aligned_cols=251  Identities=15%  Similarity=0.192  Sum_probs=216.8

Q ss_pred             hhhhcCC-CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGNG-QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls~-~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      .+.++.. ..+....++..|++|.|+.+|.++++.++..|+++|+||+. .+..+..++..|+++.|+.++.+ .++.++
T Consensus       154 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~  232 (530)
T 1wa5_B          154 ALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLI  232 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHH
Confidence            3455543 34556677788999999999999999999999999999998 57889999999999999999995 788999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      ..|+++|+||+.+...........|+++.|+.++ .++++.++..++++|.||+ .++.....+.+.|+++.|+.++.++
T Consensus       233 ~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~  311 (530)
T 1wa5_B          233 RTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE  311 (530)
T ss_dssp             HHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             HHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC
Confidence            9999999999987425555666789999999998 5678999999999999999 5567788888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-ch
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-EV  357 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-~~  357 (408)
                      ++.++..|+++|+|++.                 +++.....+.+.|+++.|+.++.++++.++..|+++|++++.+ ++
T Consensus       312 ~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~  374 (530)
T 1wa5_B          312 STLVQTPALRAVGNIVT-----------------GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE  374 (530)
T ss_dssp             CHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ChhhHHHHHHHHHHHHc-----------------CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            99999999999999997                 7788888889999999999999999999999999999999986 55


Q ss_pred             hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          358 NAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       358 ~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      ....+++.|+++.|+.++.+.+. .++..|.++|.
T Consensus       375 ~~~~~~~~~~l~~L~~lL~~~~~-~v~~~a~~aL~  408 (530)
T 1wa5_B          375 QIQAVIDANLIPPLVKLLEVAEY-KTKKEACWAIS  408 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCH-HHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHhcCCH-HHHHHHHHHHH
Confidence            66778899999999999986544 45555665543

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=6.1e-23  Score=216.76  Aligned_cols=283  Identities=16%  Similarity=0.149  Sum_probs=234.3

Q ss_pred             hhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHH
Q 041050          122 FRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRR  200 (408)
Q Consensus       122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~  200 (408)
                      .+.+++...++...+++.|+++.|+.+|+++++.++..|+++|.||+. .+..+..+++.|++|.|+.+|.+ .++.++.
T Consensus        80 ~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~~~~~~  158 (644)
T 2z6h_A           80 TLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKFLA  158 (644)
T ss_dssp             HHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHHHH
T ss_pred             HHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCc-CCHHHHH
Confidence            344566666688889999999999999999999999999999999998 56788888899999999999995 5788888


Q ss_pred             HHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCH
Q 041050          201 VAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHP  280 (408)
Q Consensus       201 ~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~  280 (408)
                      .++.+|++|+..++.++..+++.|+++.|+.++.+...+.++..++++|+||+.++.++..+++.|+++.|+.++.++++
T Consensus       159 ~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~  238 (644)
T 2z6h_A          159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQ  238 (644)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCH
Confidence            89999999997559999999999999999999987777889999999999999999999999999999999999998899


Q ss_pred             HHHHHHHHHHHHhhccc---------------------hhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccCC-
Q 041050          281 DVLSQVARGIANFAKCE---------------------SRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANNE-  337 (408)
Q Consensus       281 ~v~~~a~~aL~nL~~~~---------------------~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~~-  337 (408)
                      .++..++++|.||+...                     .+.+....+++++++. ++..+..+.+.|+++.|+.++.+. 
T Consensus       239 ~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~  318 (644)
T 2z6h_A          239 RLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG  318 (644)
T ss_dssp             HHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccC
Confidence            99999999999998632                     2223333345666544 567889999999999999999763 


Q ss_pred             -CHHHHHHHHHHHHHHccCch----hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh---ccHhhHHHHHhhh
Q 041050          338 -AAPIRRHIELALCHLAQHEV----NAREMISGGALWELVRISRDCSREDIRSLAHRTLS---SSLTFRAEMRRLR  405 (408)
Q Consensus       338 -~~~v~~~a~~aL~~La~~~~----~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~~~~~~~  405 (408)
                       .++++..|+++|++|+.+..    .+..+++.|+++.|++++.+.....++..|.++|.   .++..+..+...|
T Consensus       319 ~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~  394 (644)
T 2z6h_A          319 DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG  394 (644)
T ss_dssp             TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcC
Confidence             37999999999999997532    33457799999999999997765667766765543   3444444444443

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=7.8e-23  Score=184.66  Aligned_cols=194  Identities=20%  Similarity=0.289  Sum_probs=173.3

Q ss_pred             HhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCch
Q 041050          179 EAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDK  257 (408)
Q Consensus       179 ~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~  257 (408)
                      ..|+.+.|+.+|. ++++.++..|+++|++|+..++.++..+++.|+++.|+.+| .++++.++..++++|+||+ .++.
T Consensus        10 ~~~~~~~l~~LL~-s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLN-SPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCcH
Confidence            4567899999998 47899999999999999976699999999999999999999 4578999999999999999 7889


Q ss_pred             hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC
Q 041050          258 LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE  337 (408)
Q Consensus       258 ~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~  337 (408)
                      ++..+.+.|+++.|+.+|.++++.++..|+++|+||+.                 ++++.+..+.+.|+++.|++++.++
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----------------~~~~~~~~~~~~~~i~~L~~ll~~~  150 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-----------------GGNEQIQAVIDAGALPALVQLLSSP  150 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred             HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHc-----------------CCHHHHHHHHHcCcHHHHHHHHcCC
Confidence            99999999999999999999999999999999999997                 7788888899999999999999999


Q ss_pred             CHHHHHHHHHHHHHHccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          338 AAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       338 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      +++++..|+++|++++.+ ++++..+.+.|+++.|++++.+. +..++..|.++|.
T Consensus       151 ~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~  205 (210)
T 4db6_A          151 NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALE  205 (210)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            999999999999999998 66777788999999999999964 4456666666553

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=8.9e-23  Score=215.51  Aligned_cols=249  Identities=21%  Similarity=0.244  Sum_probs=202.2

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCC-CHHHHHHHHHHHHHhccCCh---hh
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFE-DETIRRVAAGAIANLAMNAE---AN  216 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~-~~~v~~~A~~aL~nLa~~~~---~~  216 (408)
                      ++.|+.++++++++++..|+++|.+|+. ++.++..+++.|+++.|+.+|.+.. .+.++..|+++|+||+..++   ..
T Consensus       265 i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~  344 (644)
T 2z6h_A          265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA  344 (644)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHH
Confidence            4444555666788888899999999988 5688999999999999999998533 37999999999999997533   45


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--hh
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN--FA  294 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n--L~  294 (408)
                      +..++..|+++.|+.+|.+..++.++..++++|+||+.++.++..+++.|+++.|+.++.++++++++.|+|++.|  ++
T Consensus       345 q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~  424 (644)
T 2z6h_A          345 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFV  424 (644)
T ss_dssp             HHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------C
T ss_pred             HHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhc
Confidence            6778999999999999976666899999999999999888899999999999999999998888999999998888  54


Q ss_pred             cc--chhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHH
Q 041050          295 KC--ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELV  372 (408)
Q Consensus       295 ~~--~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~  372 (408)
                      ..  ..+......+++++++.++..+..+.+.|+++.|+.++.+++++++..|+++|++++.+++.+..+.+.|+++.|+
T Consensus       425 ~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~  504 (644)
T 2z6h_A          425 EGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT  504 (644)
T ss_dssp             CSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHH
Confidence            21  1222334556677888889999999999999999999999999999999999999999888888888999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHH
Q 041050          373 RISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       373 ~ll~~~~~~~~~~~A~~~L  391 (408)
                      +++.+. +.+++..|.++|
T Consensus       505 ~ll~~~-~~~vr~~A~~aL  522 (644)
T 2z6h_A          505 ELLHSR-NEGVATYAAAVL  522 (644)
T ss_dssp             HHTTCS-CHHHHHHHHHHH
T ss_pred             HHHcCC-CHHHHHHHHHHH
Confidence            999865 445666666554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.90  E-value=1.6e-22  Score=193.50  Aligned_cols=173  Identities=23%  Similarity=0.254  Sum_probs=158.0

Q ss_pred             hhhhcCCCCchHHHHHHhcCHHHHHH-hhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGNGQKAPITKLFEQVGLHKILS-LLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~-lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      .+..+....++...++..||+|.|+. +|+++++.+|..|+|+|+|++. ++..+..+++.||+|+|+.+|.++.++.++
T Consensus        63 ~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~  142 (296)
T 1xqr_A           63 LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR  142 (296)
T ss_dssp             HHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHH
T ss_pred             HHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHH
Confidence            34444445567778899999999999 9999999999999999999998 788999999999999999999865578999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      +.|+|+|+||+.+++..++.+.+.||++.|+.+|. +.++.++..++|+|+||+ ++++.+..+++.|+++.|+.+|.++
T Consensus       143 ~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~  221 (296)
T 1xqr_A          143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE  221 (296)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence            99999999999887888889999999999999994 578999999999999998 7788999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhc
Q 041050          279 HPDVLSQVARGIANFAK  295 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~  295 (408)
                      ++.++..|+++|.||+.
T Consensus       222 d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          222 HSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             CSTHHHHHHHHHHHHHT
T ss_pred             ChhHHHHHHHHHHHHHh
Confidence            99999999999999996

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=3.1e-22  Score=215.83  Aligned_cols=252  Identities=21%  Similarity=0.237  Sum_probs=209.3

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCC-CCHHHHHHHHHHHHHhccCChh---
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSF-EDETIRRVAAGAIANLAMNAEA---  215 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~-~~~~v~~~A~~aL~nLa~~~~~---  215 (408)
                      .++.|+.+|++.+..++..|+++|.+|+. .+.++..+++.|+++.|+.+|... +.+.++..|+++|+||+..++.   
T Consensus       400 ~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~  479 (780)
T 2z6g_A          400 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEM  479 (780)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHH
Confidence            46666777778889999999999999998 568899999999999999999753 3458999999999999986343   


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH--h
Q 041050          216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN--F  293 (408)
Q Consensus       216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n--L  293 (408)
                      .+..+...|+++.|+.+|....++.++..++++|+||+.++.++..+.+.|+++.|+.+|.++++++++.++|++.|  +
T Consensus       480 ~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~  559 (780)
T 2z6g_A          480 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF  559 (780)
T ss_dssp             HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CC
T ss_pred             HHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchh
Confidence            46788999999999999976666799999999999999888899999999999999999998888899999999888  5


Q ss_pred             hccc--hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH
Q 041050          294 AKCE--SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL  371 (408)
Q Consensus       294 ~~~~--~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L  371 (408)
                      +...  .+......+++++++.++..+..+.+.|+++.|+.++.++++.++..|+.+|++|+.+++.+..+.+.|+++.|
T Consensus       560 ~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L  639 (780)
T 2z6g_A          560 VEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  639 (780)
T ss_dssp             STTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHH
T ss_pred             hcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHH
Confidence            4321  22344556778888889999999999999999999999999999999999999999988888888999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhc
Q 041050          372 VRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       372 ~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      ++++.+. +.+++..|.++|..
T Consensus       640 ~~Ll~~~-~~~Vr~~A~~aL~~  660 (780)
T 2z6g_A          640 TELLHSR-NEGVATYAAAVLFR  660 (780)
T ss_dssp             HHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHcCC-CHHHHHHHHHHHHH
Confidence            9999865 45566666655543

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=2.8e-21  Score=208.37  Aligned_cols=285  Identities=16%  Similarity=0.162  Sum_probs=234.8

Q ss_pred             hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050          120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI  198 (408)
Q Consensus       120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v  198 (408)
                      ...+.+++....+...+++.|+++.|+.+|+++++.++..|+++|.||+. .+..+..+++.|+++.|+.+|.+ .+..+
T Consensus       214 a~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~-~~~~v  292 (780)
T 2z6g_A          214 SGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF  292 (780)
T ss_dssp             HHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC-CCHHH
T ss_pred             HHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhc-CCHHH
Confidence            34456676666777888999999999999999999999999999999998 57788888899999999999995 68889


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050          199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      +..++.+|.+++..+++++..+++.|+++.|+.++...+.+.....++++|.||+.++.++..+++.|+++.|+.++.++
T Consensus       293 ~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~  372 (780)
T 2z6g_A          293 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP  372 (780)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCC
Confidence            99999999999986699999999999999999999877777788899999999999999999999999999999999988


Q ss_pred             CHHHHHHHHHHHHHhhccc---------------------hhhhhHHHhhhhhccC-ChhhHHHHHhcCcHHHHHHhccC
Q 041050          279 HPDVLSQVARGIANFAKCE---------------------SRAATQVRFIRCTATG-VKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~---------------------~~~~~~~~~~i~~~~~-~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      ++.+++.|+++|.+|+...                     .+.+....+++++++. ++..+..+.+.|+++.|+.++.+
T Consensus       373 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  452 (780)
T 2z6g_A          373 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR  452 (780)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence            9999999999999998522                     1223333345666544 46788889999999999999975


Q ss_pred             -C-CHHHHHHHHHHHHHHccCchh----HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh---ccHhhHHHHHhhh
Q 041050          337 -E-AAPIRRHIELALCHLAQHEVN----AREMISGGALWELVRISRDCSREDIRSLAHRTLS---SSLTFRAEMRRLR  405 (408)
Q Consensus       337 -~-~~~v~~~a~~aL~~La~~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~---~~~~~~~~~~~~~  405 (408)
                       + ..+++..|+++|++|+.+...    +..+...|+++.|++++.+.+...++..|.++|.   ..+..+..+...|
T Consensus       453 ~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g  530 (780)
T 2z6g_A          453 AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQG  530 (780)
T ss_dssp             HTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCC
Confidence             3 348999999999999975322    4567799999999999998776677777775544   3444444444444

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.87  E-value=6.2e-22  Score=182.35  Aligned_cols=165  Identities=19%  Similarity=0.287  Sum_probs=145.7

Q ss_pred             CCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHH
Q 041050          129 QKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIA  207 (408)
Q Consensus       129 ~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~  207 (408)
                      ..++...+++.|+||+|+++|+++++++|..|+++|.||+. +++++..|++.||||+|+.+|.++.+..+++.|+++|+
T Consensus        41 ~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~  120 (233)
T 3tt9_A           41 KSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLW  120 (233)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            55677789999999999999999999999999999999998 78999999999999999999985568899999999999


Q ss_pred             HhccCChhhHHHHHhcCcHHHHHHHhh---------------cCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc-ccHHH
Q 041050          208 NLAMNAEANQELIMAQGGISLLSTTAA---------------DAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE-GGIRA  270 (408)
Q Consensus       208 nLa~~~~~~~~~i~~~g~i~~Lv~lL~---------------~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~-g~l~~  270 (408)
                      ||+.. +.++..|++ +|+|.|+.++.               ...++.++.+++++|.||+ .++++|..+++. |+++.
T Consensus       121 nLS~~-~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~  198 (233)
T 3tt9_A          121 NLSSN-DKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDS  198 (233)
T ss_dssp             HHHTS-GGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHH
T ss_pred             HHHcC-hhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHH
Confidence            99998 999999987 47999987652               1247899999999999998 577999999986 56799


Q ss_pred             HHHhhcC------CCHHHHHHHHHHHHHhhc
Q 041050          271 LLGMVRC------GHPDVLSQVARGIANFAK  295 (408)
Q Consensus       271 L~~lL~~------~~~~v~~~a~~aL~nL~~  295 (408)
                      |+.+++.      .+...+++|..+|+||+.
T Consensus       199 Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          199 LVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            9999964      255789999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.6e-20  Score=195.57  Aligned_cols=235  Identities=11%  Similarity=0.121  Sum_probs=185.4

Q ss_pred             hHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCH--HHHHHHHHHHHHh
Q 041050          132 PITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDE--TIRRVAAGAIANL  209 (408)
Q Consensus       132 ~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~--~v~~~A~~aL~nL  209 (408)
                      +...+++.|++|.|+.+++++++.+|..|+++|.||+.++.+|..++++||+++|+.+|.+..+.  ..+..|+.+|++|
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL  528 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM  528 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence            34567888899999999999999999999999999999999999999999999999999864332  2789999999999


Q ss_pred             ccCChhhHHHHHh---cCcHHHHHHHhhcCCC------------HHH-HHHHHHHHHHHhCCc-----hhHHHHHhc-cc
Q 041050          210 AMNAEANQELIMA---QGGISLLSTTAADAED------------PQT-LRMVAGAIANLCGND-----KLQMKLRSE-GG  267 (408)
Q Consensus       210 a~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~------------~~v-~~~a~~aL~nL~~~~-----~~~~~i~~~-g~  267 (408)
                      +.. ......|-.   .|++++|+.+|..+++            +.+ ...|+.+|.|||..+     +.+..|++. |+
T Consensus       529 lis-~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga  607 (778)
T 3opb_A          529 LIF-TNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVY  607 (778)
T ss_dssp             HHT-SCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHH
T ss_pred             Hhc-CCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCH
Confidence            865 322222211   4899999999962111            112 668999999999554     457888885 99


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHh------cCcHHHHHHhccCCCHHH
Q 041050          268 IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIE------DGALPWIVQNANNEAAPI  341 (408)
Q Consensus       268 l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~------~g~l~~Lv~lL~~~~~~v  341 (408)
                      ++.|..++.+++..+++.|+++++||+. .++...                ..+.+      .+.++.|+.++.+++.++
T Consensus       608 ~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~----------------~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~  670 (778)
T 3opb_A          608 WSTIENLMLDENVPLQRSTLELISNMMS-HPLTIA----------------AKFFNLENPQSLRNFNILVKLLQLSDVES  670 (778)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTG----------------GGTSCCSSHHHHHHHHHHHHGGGCSCHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHH----------------HHHHhhcCchhhccHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999994 222210                12221      224889999999999999


Q ss_pred             HHHHHHHHHHHcc-CchhHHHHHhC-CcHHHHHHHHhcC-CHHHHH
Q 041050          342 RRHIELALCHLAQ-HEVNAREMISG-GALWELVRISRDC-SREDIR  384 (408)
Q Consensus       342 ~~~a~~aL~~La~-~~~~~~~l~~~-g~i~~L~~ll~~~-~~~~~~  384 (408)
                      |+.|+|+|.|++. ++..+..+++. ++++.|+.++.+. ++++.+
T Consensus       671 r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~  716 (778)
T 3opb_A          671 QRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELR  716 (778)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHH
Confidence            9999999999975 66677888876 8999999999983 344433

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.79  E-value=1e-18  Score=183.62  Aligned_cols=252  Identities=11%  Similarity=0.077  Sum_probs=192.6

Q ss_pred             hhhcCCCCchHHHHHHhcC-HHHHHHhhcC-CCHHHHHHHHHHHHHHcCCch----------------------------
Q 041050          123 RDSGNGQKAPITKLFEQVG-LHKILSLLES-EDANVRIHAVKVVANLAAEEA----------------------------  172 (408)
Q Consensus       123 l~~ls~~~~~~~~l~~~~~-v~~Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~----------------------------  172 (408)
                      |.+++-..+-...+....+ ++.|+.+++. ++..+...++.+|.||+..++                            
T Consensus       358 LaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~  437 (778)
T 3opb_A          358 LAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGA  437 (778)
T ss_dssp             HHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCT
T ss_pred             HHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccc
Confidence            3444444444445555555 8999999994 888999999999999987211                            


Q ss_pred             -----------hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCH--
Q 041050          173 -----------NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDP--  239 (408)
Q Consensus       173 -----------~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~--  239 (408)
                                 ++..+++.|++|.|+.++++ .++.++..|+++|.||+.+ +.+|..+++.||++.|+.+|.+..+.  
T Consensus       438 ~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S-~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~  515 (778)
T 3opb_A          438 EKAAKEDILLFNEKYILRTELISFLKREMHN-LSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGE  515 (778)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG-SCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CC
T ss_pred             cccchHHHHHHHHHHHHHCcCHHHHHHHHcC-CCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcch
Confidence                       45677889999999999985 6889999999999999999 99999999999999999999654433  


Q ss_pred             HHHHHHHHHHHHHhCCchhHHHHHh---cccHHHHHHhhcC-CCH-------------HHHHHHHHHHHHhhccchhhhh
Q 041050          240 QTLRMVAGAIANLCGNDKLQMKLRS---EGGIRALLGMVRC-GHP-------------DVLSQVARGIANFAKCESRAAT  302 (408)
Q Consensus       240 ~v~~~a~~aL~nL~~~~~~~~~i~~---~g~l~~L~~lL~~-~~~-------------~v~~~a~~aL~nL~~~~~~~~~  302 (408)
                      .++..|+++|++|....+....+-.   .|++++|+.+|.. +..             .-+.+|+.||.||+.       
T Consensus       516 ~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs-------  588 (778)
T 3opb_A          516 PIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLAS-------  588 (778)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhc-------
Confidence            2899999999999833322222211   3899999999972 221             126789999999996       


Q ss_pred             HHHhhhhhccCC----hhhHHHHHhc-CcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH-HHHHhCC------cHHH
Q 041050          303 QVRFIRCTATGV----KSGRSLLIED-GALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA-REMISGG------ALWE  370 (408)
Q Consensus       303 ~~~~~i~~~~~~----~~~~~~i~~~-g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~-~~l~~~g------~i~~  370 (408)
                                .+    ++.+..++.. |++|.|..++.+++..+|+.|+++++||+.+++.. ..+...+      .++.
T Consensus       589 ----------~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~l  658 (778)
T 3opb_A          589 ----------SETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI  658 (778)
T ss_dssp             ----------CCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHH
T ss_pred             ----------CCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHH
Confidence                      33    3567778885 99999999999999999999999999999987764 3454322      4789


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcc
Q 041050          371 LVRISRDCSREDIRSLAHRTLSSS  394 (408)
Q Consensus       371 L~~ll~~~~~~~~~~~A~~~L~~~  394 (408)
                      |+.++.+ ++.+.+.+|.++|.+.
T Consensus       659 LV~Ll~s-~D~~~r~AAagALAnL  681 (778)
T 3opb_A          659 LVKLLQL-SDVESQRAVAAIFANI  681 (778)
T ss_dssp             HHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred             HHHHHcC-CCHHHHHHHHHHHHHh
Confidence            9999975 5556666666665543

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.62  E-value=2.1e-14  Score=147.55  Aligned_cols=246  Identities=17%  Similarity=0.152  Sum_probs=191.8

Q ss_pred             HhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch-hHHHHHHh-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          138 EQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEA-NQEKIVEA-GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       138 ~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~-~~~~i~~~-g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      +.++++.|+.+|++.+..+|..++..|..|+. .+. +++.|... +|++.|+.+|.+ ..+.+|..|+..|.+|+.+++
T Consensus       120 ~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d-~rE~iRneallLL~~Lt~~n~  198 (651)
T 3grl_A          120 QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD-SREVIRNDGVLLLQALTRSNG  198 (651)
T ss_dssp             STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGC-SSHHHHHHHHHHHHHHHTTCH
T ss_pred             CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhC-chHHHHHHHHHHHHHHhcCCH
Confidence            34579999999999999999999999999987 554 89999954 889999999994 578899999999999999989


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCC---CHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCH------HHHH
Q 041050          215 ANQELIMAQGGISLLSTTAADAE---DPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHP------DVLS  284 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~---~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~------~v~~  284 (408)
                      ..|+.+.-+|+++.|+.++....   ...+..-++.+|.||. .|+.||..+.+.|+++.|..++..++.      ....
T Consensus       199 ~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~  278 (651)
T 3grl_A          199 AIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVT  278 (651)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHH
Confidence            99999999999999999985322   2357788999999998 889999999999999999999974432      1223


Q ss_pred             H---HHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHHHHHHHccC-chh
Q 041050          285 Q---VARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIELALCHLAQH-EVN  358 (408)
Q Consensus       285 ~---a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~~-~~~  358 (408)
                      +   +..++..|..  +....+         +++.++..+.+.|+++.|++++.+.  ...++..|..+++.+..+ +.+
T Consensus       279 N~~~~L~iIrlLv~--~~~~~~---------~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~  347 (651)
T 3grl_A          279 NLHLMLQLVRVLVS--PNNPPG---------ATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN  347 (651)
T ss_dssp             HHHHHHHHHHHHTC--TTSCHH---------HHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC--CCCCCC---------CCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3   3345555543  111111         2567899999999999999998765  788999999999999987 455


Q ss_pred             HHHHHhCC---------cHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050          359 AREMISGG---------ALWELVRISRDCSREDIRSLAHRTLSSSL  395 (408)
Q Consensus       359 ~~~l~~~g---------~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  395 (408)
                      +..+.+..         .+..|+.++.+.+.-++|.+|..++.++.
T Consensus       348 Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          348 QDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            56665432         33345555666677788888876555444

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.56  E-value=1.7e-12  Score=133.39  Aligned_cols=253  Identities=15%  Similarity=0.119  Sum_probs=199.8

Q ss_pred             HHHHHHhcCHHHHHHhhcC--CCHHHHHHHHHHHHHHcC-Cch-----------------hHHHHH-HhCCHHHHHHHHc
Q 041050          133 ITKLFEQVGLHKILSLLES--EDANVRIHAVKVVANLAA-EEA-----------------NQEKIV-EAGGLSSLLMLLR  191 (408)
Q Consensus       133 ~~~l~~~~~v~~Ll~lL~s--~~~~v~~~A~~aL~nLa~-~~~-----------------~~~~i~-~~g~i~~L~~lL~  191 (408)
                      -+..+..+|++.|+..|+.  .|.++-..++.+|.++.. ++.                 +.+.+. +.++|+.|+.+|+
T Consensus        53 y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~  132 (651)
T 3grl_A           53 YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE  132 (651)
T ss_dssp             TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTT
T ss_pred             hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc
Confidence            3567788899999999984  678888999999988765 321                 222333 4567999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCChh-hHHHHHhc-CcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccH
Q 041050          192 SFEDETIRRVAAGAIANLAMNAEA-NQELIMAQ-GGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGI  268 (408)
Q Consensus       192 ~~~~~~v~~~A~~aL~nLa~~~~~-~~~~i~~~-g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l  268 (408)
                       .++-.+|..++..|..|+.+.+. .++.|... +|++.|+.+| +++.+.++-.++..|.+|+ +|++.|+.+.-+|++
T Consensus       133 -~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaF  210 (651)
T 3grl_A          133 -EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAF  210 (651)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             -CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccH
Confidence             47899999999999999988677 89999955 9999999999 4566789999999999999 777888888888999


Q ss_pred             HHHHHhhcCCC----HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHH----
Q 041050          269 RALLGMVRCGH----PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAP----  340 (408)
Q Consensus       269 ~~L~~lL~~~~----~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~----  340 (408)
                      +.|+.+++.+.    ..+...|+.+|.||.+                 +|+.++..|.+.|+++.|..++..++..    
T Consensus       211 e~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----------------~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~  273 (651)
T 3grl_A          211 ERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----------------NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS  273 (651)
T ss_dssp             HHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred             HHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----------------cCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence            99999996543    3788899999999998                 8999999999999999999999755321    


Q ss_pred             --HHHH---HHHHHHHHccC-------chhHHHHHhCCcHHHHHHHHhcCC-HHHHHHHHH----HHHhccHhhHHHHHh
Q 041050          341 --IRRH---IELALCHLAQH-------EVNAREMISGGALWELVRISRDCS-REDIRSLAH----RTLSSSLTFRAEMRR  403 (408)
Q Consensus       341 --v~~~---a~~aL~~La~~-------~~~~~~l~~~g~i~~L~~ll~~~~-~~~~~~~A~----~~L~~~~~~~~~~~~  403 (408)
                        ...+   +..++..|...       ..++..+.+.|++..|++++.+.. +.+++..|.    .++..++..|..+-.
T Consensus       274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~  353 (651)
T 3grl_A          274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS  353 (651)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence              3333   55666666654       246778889999999999998653 455554444    567778887777654


Q ss_pred             h
Q 041050          404 L  404 (408)
Q Consensus       404 ~  404 (408)
                      .
T Consensus       354 ~  354 (651)
T 3grl_A          354 V  354 (651)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.43  E-value=1.7e-11  Score=110.30  Aligned_cols=186  Identities=16%  Similarity=0.173  Sum_probs=154.0

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ...++.|+.+|+++++.+|..|+.+|+.+..          .++++.|+.+|. ++++.++..|+++|+.+...      
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~------   80 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGDE------   80 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCCG------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH------
Confidence            3468999999999999999999999998754          357999999998 46899999999999998643      


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES  298 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~  298 (408)
                           +.++.|+.+| .++++.++..++.+|+++..          ...++.|..++.++++.++..|+++|+++..   
T Consensus        81 -----~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  141 (211)
T 3ltm_A           81 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  141 (211)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---
Confidence                 4788999998 66889999999999998853          3578889999999999999999999999852   


Q ss_pred             hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050          299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC  378 (408)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~  378 (408)
                                               ...++.|..++.++++.+|..|+.+|..+..          ..+++.|..++.+.
T Consensus       142 -------------------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~  186 (211)
T 3ltm_A          142 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG  186 (211)
T ss_dssp             -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC
T ss_pred             -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC
Confidence                                     2478899999999999999999999999953          23577888888865


Q ss_pred             CHHHHHHHHHHHHhccHh
Q 041050          379 SREDIRSLAHRTLSSSLT  396 (408)
Q Consensus       379 ~~~~~~~~A~~~L~~~~~  396 (408)
                      + ..++..|..+|.....
T Consensus       187 ~-~~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          187 T-GFARKVAVNYLETHKS  203 (211)
T ss_dssp             C-HHHHHHHHHHHHC---
T ss_pred             C-HHHHHHHHHHHHhcCC
Confidence            4 4578888877765543

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=1.3e-11  Score=110.08  Aligned_cols=184  Identities=16%  Similarity=0.176  Sum_probs=153.1

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      .+..+.++++|+++++.+|..|+++|+.+..          .+.++.|+.+|. ++++.++..|+.+|+.+...      
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~~L~~~~~~------   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALK-DEDAWVRRAAADALGQIGDE------   75 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG------
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHc-CCCHHHHHHHHHHHHhhCCH------
Confidence            3557899999999999999999999998754          356899999998 57899999999999988643      


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES  298 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~  298 (408)
                           ..++.|+.+| .++++.++..++++|+++..          ...++.|..++.++++.++..|+++|+.+..   
T Consensus        76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---  136 (201)
T 3ltj_A           76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD---  136 (201)
T ss_dssp             -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence                 4788999998 56889999999999998753          3478889999999999999999999999862   


Q ss_pred             hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC
Q 041050          299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC  378 (408)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~  378 (408)
                                               .+.++.|+.++.++++.+|..|+.+|..+..          ..+++.|..++.+.
T Consensus       137 -------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~  181 (201)
T 3ltj_A          137 -------------------------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETG  181 (201)
T ss_dssp             -------------------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHC
T ss_pred             -------------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCC
Confidence                                     3578999999999999999999999999943          12577888888765


Q ss_pred             CHHHHHHHHHHHHhcc
Q 041050          379 SREDIRSLAHRTLSSS  394 (408)
Q Consensus       379 ~~~~~~~~A~~~L~~~  394 (408)
                      + ..++..|.++|...
T Consensus       182 ~-~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          182 T-GFARKVAVNYLETH  196 (201)
T ss_dssp             C-HHHHHHHHHHHHHC
T ss_pred             C-HHHHHHHHHHHHHH
Confidence            4 45777777776543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.40  E-value=5.4e-11  Score=111.74  Aligned_cols=138  Identities=11%  Similarity=0.094  Sum_probs=94.9

Q ss_pred             HHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       135 ~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      .......++.|+..|.++++.+|..|+++|+++..          .+.++.|+.+|. ++++.+|..|+++|+++... +
T Consensus        18 ~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vR~~A~~aL~~l~~~-~   85 (280)
T 1oyz_A           18 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKIC-K   85 (280)
T ss_dssp             HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCC-T
T ss_pred             HHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc-CCCHHHHHHHHHHHHHhccc-c
Confidence            34455678888888888888888889888888763          235788888887 46788888888888888754 3


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      .....     .++.|...+.+++++.++..++++|++++ .++...     ...++.|..++.++++.++..|+++|+++
T Consensus        86 ~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~-----~~~~~~L~~~l~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           86 KCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS-----PKIVEQSQITAFDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             TTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             ccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCccc-----HHHHHHHHHHhhCCCHHHHHHHHHHHHhc
Confidence            22111     23334333335677888888888888886 333222     23456677777777888888888887776


Q ss_pred             h
Q 041050          294 A  294 (408)
Q Consensus       294 ~  294 (408)
                      .
T Consensus       156 ~  156 (280)
T 1oyz_A          156 N  156 (280)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.30  E-value=2.4e-11  Score=129.04  Aligned_cols=198  Identities=13%  Similarity=0.083  Sum_probs=157.0

Q ss_pred             HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHHHHhccC-Ch
Q 041050          137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLML-LRSFEDETIRRVAAGAIANLAMN-AE  214 (408)
Q Consensus       137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~-~~  214 (408)
                      .....+.++++.|+|++++.|..|+++|.||+.++..+..+...|++.+++.- |. +++.+||..|+++|.||+.+ .+
T Consensus        31 ~~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~-D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           31 LREDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLT-DNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTT-CSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             cchhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCc
Confidence            34445777888899999999999999999999999999999999999887664 55 57899999999999999975 37


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcC-------------CC-------HHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHH
Q 041050          215 ANQELIMAQGGISLLSTTAADA-------------ED-------PQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLG  273 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~-------------~~-------~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~  273 (408)
                      +.+..++..|++++|..++...             ..       .++...++.+|++|| ++++....+...++++.|+.
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~  189 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLF  189 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHH
Confidence            8889999999999999887421             01       234557889999999 77788888888999999999


Q ss_pred             hhcC---CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHH---HHHHhccCCCHHHHHHHHH
Q 041050          274 MVRC---GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALP---WIVQNANNEAAPIRRHIEL  347 (408)
Q Consensus       274 lL~~---~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~---~Lv~lL~~~~~~v~~~a~~  347 (408)
                      .|.+   ...+++..|+.+|.+|+.                 .+++....+.+.|...   .+..+.+ .+...+..+++
T Consensus       190 ~L~~~~~~~~~v~~~a~~~L~~ls~-----------------dn~~~~~~i~~~~~~~~~~~ll~~~~-~~~~~~~la~g  251 (684)
T 4gmo_A          190 RLISADIAPQDIYEEAISCLTTLSE-----------------DNLKVGQAITDDQETHVYDVLLKLAT-GTDPRAVMACG  251 (684)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHT-----------------TCHHHHHHHHTCCSSCHHHHHHHHHH-SSCTTHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhc-----------------cCHHHHHHHHhcchHHHHHHHHHHhc-CCcHHHHHHHH
Confidence            8832   246799999999999997                 7777777788776543   3333333 34445778889


Q ss_pred             HHHHHc
Q 041050          348 ALCHLA  353 (408)
Q Consensus       348 aL~~La  353 (408)
                      +|.|+.
T Consensus       252 iL~Ni~  257 (684)
T 4gmo_A          252 VLHNVF  257 (684)
T ss_dssp             HHHHHH
T ss_pred             HHHhHh
Confidence            998874

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.25  E-value=2.1e-10  Score=107.70  Aligned_cols=166  Identities=12%  Similarity=0.047  Sum_probs=116.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.|+.++.++++.+|..|+++|+.+...+.....     .++.|...+..++++.++..|+++|+++....+....  
T Consensus        55 ~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~--  127 (280)
T 1oyz_A           55 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP--  127 (280)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH--
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH--
Confidence            578889999999999999999999988753322111     2333433222356888999999999998743232222  


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                         ..++.|+.++ .++++.++..++.+|+++..          .+.++.|+.++.++++.++..|+++|..+..     
T Consensus       128 ---~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----  188 (280)
T 1oyz_A          128 ---KIVEQSQITA-FDKSTNVRRATAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKY-----  188 (280)
T ss_dssp             ---HHHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC-----
T ss_pred             ---HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc-----
Confidence               2467788887 56788999999999987753          2478888999988999999999999988852     


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHc
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLA  353 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La  353 (408)
                                  .+         ..+++.|+.++.++++.+|..|+++|+++.
T Consensus       189 ------------~~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          189 ------------DN---------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             ------------CC---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             ------------Cc---------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence                        11         134566666776667777777777777665

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.23  E-value=2.4e-10  Score=102.60  Aligned_cols=157  Identities=17%  Similarity=0.147  Sum_probs=131.6

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      .+++.|+.++.++++.+|..|+++|+.+..          .++++.|+.+|. ++++.++..|+++|+.+...       
T Consensus        50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~~-------  111 (211)
T 3ltm_A           50 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIGDE-------  111 (211)
T ss_dssp             GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-------
T ss_pred             cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcH-------
Confidence            568999999999999999999999999764          357899999998 47899999999999998653       


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                          +.++.|+.++ .++++.++..++.+|+++..          ...++.|..++.++++.++..|+.+|..+..    
T Consensus       112 ----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  172 (211)
T 3ltm_A          112 ----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----  172 (211)
T ss_dssp             ----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred             ----HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence                4788999988 67889999999999999853          3578889999999999999999999999852    


Q ss_pred             hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050          300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV  357 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~  357 (408)
                                              ..+++.|..++.++++.+|..|..+|.++.....
T Consensus       173 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          173 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             ------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             ------------------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence                                    2467889999999999999999999999987643

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.20  E-value=4.7e-10  Score=99.92  Aligned_cols=154  Identities=18%  Similarity=0.153  Sum_probs=132.0

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      ..++.|+.+|.++++.+|..|+++|+.+..          ..+++.|+.+|. ++++.+|..|+++|+++...       
T Consensus        45 ~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~-------  106 (201)
T 3ltj_A           45 RAVEPLIKALKDEDAWVRRAAADALGQIGD----------ERAVEPLIKALK-DEDGWVRQSAAVALGQIGDE-------  106 (201)
T ss_dssp             GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCCG-------
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCcH-------
Confidence            468999999999999999999999998754          347899999998 47899999999999998653       


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                          ..++.|+.++ .++++.++..++++|+++..          ...++.|..++.++++.++..|+++|..+..    
T Consensus       107 ----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----  167 (201)
T 3ltj_A          107 ----RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----  167 (201)
T ss_dssp             ----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----
T ss_pred             ----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----
Confidence                3788899988 67889999999999999853          3578889999999999999999999999852    


Q ss_pred             hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                                              ..+++.|..++.++++.+|..|..+|..+..
T Consensus       168 ------------------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          168 ------------------------ERVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ------------------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence                                    2367888999998999999999999988753

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.08  E-value=3.5e-10  Score=120.04  Aligned_cols=169  Identities=14%  Similarity=0.120  Sum_probs=135.0

Q ss_pred             CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchh
Q 041050          181 GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKL  258 (408)
Q Consensus       181 g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~  258 (408)
                      ..+.++++.|.+ .++..|..|+++|+||+.+ +..+..+...|++..++.-+..+++++|+..|+++|.|||  ..++.
T Consensus        34 ~~i~Pll~~L~S-~~~~~r~~A~~al~~l~~~-~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           34 DKILPVLKDLKS-PDAKSRTTAAGAIANIVQD-AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HTTHHHHHHHSS-SCCSHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhHHHHHHHcCC-CCHHHHHHHHHHHHHHHcC-cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            356778888985 6788999999999999998 9999999999999887664336788999999999999999  56788


Q ss_pred             HHHHHhcccHHHHHHhhcCCC---------------------HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhh
Q 041050          259 QMKLRSEGGIRALLGMVRCGH---------------------PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG  317 (408)
Q Consensus       259 ~~~i~~~g~l~~L~~lL~~~~---------------------~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~  317 (408)
                      +..+.+.|++++|..+++...                     .++..+++.+|.+|+.                 ++.+.
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e-----------------~s~~~  174 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLAL-----------------ARDEI  174 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHH-----------------HCHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHh-----------------CCHHH
Confidence            899999999999998875311                     1234456778888875                 66777


Q ss_pred             HHHHHhcCcHHHHHHhccC---CCHHHHHHHHHHHHHHccCchh-HHHHHhCCcH
Q 041050          318 RSLLIEDGALPWIVQNANN---EAAPIRRHIELALCHLAQHEVN-AREMISGGAL  368 (408)
Q Consensus       318 ~~~i~~~g~l~~Lv~lL~~---~~~~v~~~a~~aL~~La~~~~~-~~~l~~~g~i  368 (408)
                      ...+...+.++.|+..+.+   ...+++..|+.+|.+++.+... ...+.+.|..
T Consensus       175 ~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~  229 (684)
T 4gmo_A          175 HEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQET  229 (684)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSS
T ss_pred             HHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchH
Confidence            7778888999999998743   2578999999999999998544 4555565543

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.81  E-value=6.8e-08  Score=104.66  Aligned_cols=228  Identities=15%  Similarity=0.096  Sum_probs=153.6

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      +|.++++++++++.+|..|+++|.++....... ...+ ...++.|+.++. ++++.+|..|+++|.+++...+..-...
T Consensus       176 l~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~  253 (852)
T 4fdd_A          176 IPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPH  253 (852)
T ss_dssp             HHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence            567778888999999999999999877532211 1111 134788888887 4789999999999999988644432222


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh--cccHHHHHHhhc-----------C----------
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS--EGGIRALLGMVR-----------C----------  277 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~--~g~l~~L~~lL~-----------~----------  277 (408)
                      +. +.++.++..+ .+.++.++..++.++.+++..+..+..+..  ...++.++..+.           .          
T Consensus       254 l~-~l~~~l~~~~-~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~  331 (852)
T 4fdd_A          254 MH-NIVEYMLQRT-QDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDT  331 (852)
T ss_dssp             HH-HHHHHHHHHH-TCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-----------
T ss_pred             HH-HHHHHHHHHc-cCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccc
Confidence            22 3566777776 567889999999999999966544443311  134566666552           2          


Q ss_pred             -CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          278 -GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       278 -~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                       .+..+++.++.+|..|+...               | +.    +.. .+++.+.+++.+.++.+|..|+++|++++.+.
T Consensus       332 ~~~~~vr~~a~~~L~~la~~~---------------~-~~----~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~  390 (852)
T 4fdd_A          332 ISDWNLRKCSAAALDVLANVY---------------R-DE----LLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGC  390 (852)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHH---------------G-GG----GHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTT
T ss_pred             cccchHHHHHHHHHHHHHHhc---------------c-HH----HHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence             12246788888888887510               1 11    111 46788888888899999999999999999875


Q ss_pred             hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhccH
Q 041050          357 VNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSSL  395 (408)
Q Consensus       357 ~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~~  395 (408)
                      .....-.-.+.++.|+.++.+. ...++..|.+++....
T Consensus       391 ~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~  428 (852)
T 4fdd_A          391 MQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYA  428 (852)
T ss_dssp             HHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHH
Confidence            4321112345678888888754 4567777776665433

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=5.1e-08  Score=101.60  Aligned_cols=214  Identities=13%  Similarity=0.111  Sum_probs=151.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..+.+-|.++++.+|..|+.+|+++.. ++....+     ++.+..++. +.++.||+.|+.+++++...+++..   .
T Consensus        88 ~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~~~~l-----~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~---~  157 (591)
T 2vgl_B           88 VNSFVKDCEDPNPLIRALAVRTMGCIRV-DKITEYL-----CEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMV---E  157 (591)
T ss_dssp             HHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGGHHHH-----HHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCH---H
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHHHHHH-----HHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhc---c
Confidence            5666677889999999999999999863 3333333     577888888 5799999999999999988645432   2


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      +.+.++.|..+| .++++.++..|+++|..++.+ +.....-...+.+..|+..+...++..+....++++.++.     
T Consensus       158 ~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~-----  231 (591)
T 2vgl_B          158 DQGFLDSLRDLI-ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP-----  231 (591)
T ss_dssp             HHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC-----
T ss_pred             cccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC-----
Confidence            345678899998 578999999999999999943 3221000112345567777777889888888888888874     


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc----CchhHHHHHhCCcHHHHHHHHh
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ----HEVNAREMISGGALWELVRISR  376 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~----~~~~~~~l~~~g~i~~L~~ll~  376 (408)
                                  .++...     ..+++.+..++++.++.|+.+|++++.++..    +++....+. ..+.+.|+.++.
T Consensus       232 ------------~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~  293 (591)
T 2vgl_B          232 ------------KDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS  293 (591)
T ss_dssp             ------------CSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT
T ss_pred             ------------CChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc
Confidence                        222211     2467788889999999999999999999974    233333332 334567776654


Q ss_pred             cCCHHHHHHHHHHHH
Q 041050          377 DCSREDIRSLAHRTL  391 (408)
Q Consensus       377 ~~~~~~~~~~A~~~L  391 (408)
                        ++.+++-.|.+.+
T Consensus       294 --~d~~vr~~aL~~l  306 (591)
T 2vgl_B          294 --GEPEVQYVALRNI  306 (591)
T ss_dssp             --SCHHHHHHHHHHH
T ss_pred             --CCccHHHHHHHHH
Confidence              3445666666443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.77  E-value=3.3e-07  Score=95.46  Aligned_cols=227  Identities=14%  Similarity=0.088  Sum_probs=144.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN----  216 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~----  216 (408)
                      ++.+..++.++++.+|..|+.++.++.. +++..   .+.+.++.|..+|. ++++.++..|+++|..++.+++..    
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~-d~d~~V~~~A~~aL~~i~~~~~~~~~~~  198 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIA-DSNPMVVANAVAALSEISESHPNSNLLD  198 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTS-CSCHHHHHHHHHHHHHHTTSCCSCCSCC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhC-CCChhHHHHHHHHHHHHHhhCCCccchh
Confidence            5678899999999999999999999976 45432   22456899999998 578999999999999999874422    


Q ss_pred             -----HHHHHh----------------------------cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC----CchhH
Q 041050          217 -----QELIMA----------------------------QGGISLLSTTAADAEDPQTLRMVAGAIANLCG----NDKLQ  259 (408)
Q Consensus       217 -----~~~i~~----------------------------~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~----~~~~~  259 (408)
                           -..++.                            ...++.+..++ .+.++.|+..|++++.++..    +++..
T Consensus       199 l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~~~~~~~  277 (591)
T 2vgl_B          199 LNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRL-SHANSAVVLSAVKVLMKFLELLPKDSDYY  277 (591)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred             ccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence                 112221                            01223333344 45677899999999999872    33433


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh-hhhccCChhhHHHHH-------hc----CcH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFI-RCTATGVKSGRSLLI-------ED----GAL  327 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~-i~~~~~~~~~~~~i~-------~~----g~l  327 (408)
                      ..+. .+..+.|+.++. +++.++..|+.+|..+....++........ .|..-.+...+..-.       +.    .++
T Consensus       278 ~~~~-~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv  355 (591)
T 2vgl_B          278 NMLL-KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVL  355 (591)
T ss_dssp             HHHH-HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHH
T ss_pred             HHHH-HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHH
Confidence            3333 345667776654 889999999999999985322221110000 111111111111111       11    256


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          328 PWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       328 ~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                      +.|..++.+.+.+++..++++|+.++..-...    ....++.|+.++....
T Consensus       356 ~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~----~~~~v~~Ll~ll~~~~  403 (591)
T 2vgl_B          356 AELKEYATEVDVDFVRKAVRAIGRCAIKVEQS----AERCVSTLLDLIQTKV  403 (591)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH----HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH----HHHHHHHHHHHHcccc
Confidence            67778888889999999999999999863211    1123556666665443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.74  E-value=9.5e-08  Score=103.51  Aligned_cols=220  Identities=11%  Similarity=0.017  Sum_probs=144.8

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH-
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE-  218 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~-  218 (408)
                      .++.++.++.++++++|..|+++|.+++. .+..-...++ +.++.++.++. +.++.++..|+.++.+++.. +..+. 
T Consensus       216 ~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~-~~~~~vr~~a~e~l~~l~~~-~~~~~~  292 (852)
T 4fdd_A          216 FIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQ-DQDENVALEACEFWLTLAEQ-PICKDV  292 (852)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHT-CSSHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHcc-CCcHHHHHHHHHHHHHHhcc-hhHHHH
Confidence            46777788889999999999999999987 4332111122 24677777777 46788999999888888753 11111 


Q ss_pred             ------HHH---------------------------------------------------hcC----cHHHHHHHhhcCC
Q 041050          219 ------LIM---------------------------------------------------AQG----GISLLSTTAADAE  237 (408)
Q Consensus       219 ------~i~---------------------------------------------------~~g----~i~~Lv~lL~~~~  237 (408)
                            .++                                                   ...    .++.+..++ .++
T Consensus       293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l-~~~  371 (852)
T 4fdd_A          293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELL-FHH  371 (852)
T ss_dssp             HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-TCS
T ss_pred             HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-cCC
Confidence                  000                                                   001    123333444 456


Q ss_pred             CHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhh
Q 041050          238 DPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSG  317 (408)
Q Consensus       238 ~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~  317 (408)
                      ++.++..+++++++++........-.-.+.++.++..+.++++.|+..|++++.+++..-...            .... 
T Consensus       372 ~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~------------~~~~-  438 (852)
T 4fdd_A          372 EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQ------------PPDT-  438 (852)
T ss_dssp             SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS------------CTTT-
T ss_pred             CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccc------------hHHH-
Confidence            788999999999999843321111112457888999999999999999999999998510000            0000 


Q ss_pred             HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh-HHHHHhCCcHHHHHHHHhcCCHHH
Q 041050          318 RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN-AREMISGGALWELVRISRDCSRED  382 (408)
Q Consensus       318 ~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~-~~~l~~~g~i~~L~~ll~~~~~~~  382 (408)
                          .-.++++.|+..+.+.++.++..|+++|.+++..... .... -.+.++.|..++...+.+.
T Consensus       439 ----~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~-l~~ll~~L~~~l~~~~~~~  499 (852)
T 4fdd_A          439 ----YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY-LAYILDTLVFAFSKYQHKN  499 (852)
T ss_dssp             ----THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHCCHHH
T ss_pred             ----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhH-HHHHHHHHHHHHHHhChHH
Confidence                1125788899999888999999999999999865221 1111 2456777777777665554

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.61  E-value=3e-06  Score=86.90  Aligned_cols=206  Identities=14%  Similarity=0.066  Sum_probs=139.7

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +|.+..+..+++..+|..|+.+++.++..-..  .. ....+|.+..++. ++++.+|..|+.+|..++...+.   ...
T Consensus       128 ~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~~--~~-~~~l~~~l~~l~~-d~~~~VR~~a~~~l~~l~~~~~~---~~~  200 (588)
T 1b3u_A          128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSS--AV-KAELRQYFRNLCS-DDTPMVRRAAASKLGEFAKVLEL---DNV  200 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCH--HH-HHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHTSCH---HHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCH--HH-HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhcH---HhH
Confidence            44444566677888888888888888762211  11 1224677777777 57899999999999999876221   122


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      ....+|.+..++ .++++.++..++.+|..++. .+.   .......++.+..++.++++.++..++.++..++..    
T Consensus       201 ~~~l~~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~----  272 (588)
T 1b3u_A          201 KSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA----  272 (588)
T ss_dssp             HHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSCH---HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH----
T ss_pred             HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH----
Confidence            345677788877 56778999999999999872 221   112235677788888888899999999999998740    


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc--hhHHHHHhCCcHHHHHHHHhcC
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE--VNAREMISGGALWELVRISRDC  378 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~--~~~~~l~~~g~i~~L~~ll~~~  378 (408)
                                 .+.+     .....+++.++.+++++++.+|..|+.++..++..-  .......-...++.+..++.+.
T Consensus       273 -----------~~~~-----~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~  336 (588)
T 1b3u_A          273 -----------VGPE-----ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA  336 (588)
T ss_dssp             -----------HCHH-----HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS
T ss_pred             -----------hCcc-----cchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC
Confidence                       0111     123457899999999999999999999999988752  2111111223455555555543

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.58  E-value=1.3e-06  Score=89.57  Aligned_cols=220  Identities=14%  Similarity=0.059  Sum_probs=142.0

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .+|.++.+++++++++|..++.+|..+...-.. .. .....+|.|..++. +.+..+|..++.+|..++.. -..  .+
T Consensus       364 l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~-~~~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~-~~~--~~  437 (588)
T 1b3u_A          364 LLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI-RQ-LSQSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQ-LGV--EF  437 (588)
T ss_dssp             THHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH-HH-HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH-HCG--GG
T ss_pred             HHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH-HH-HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHH-cCH--HH
Confidence            456666777777788888888777776541100 01 11234677777776 46777888888888877642 100  01


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      +....+|.++..+ .++++.++..++.++..++..-...  ..-...++.|..++.+++..++..+++++..++..    
T Consensus       438 ~~~~l~~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~--~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~----  510 (588)
T 1b3u_A          438 FDEKLNSLCMAWL-VDHVYAIREAATSNLKKLVEKFGKE--WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV----  510 (588)
T ss_dssp             CCHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHH--HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh----
Confidence            1112356677776 5567788888888888887221111  11235677777777788888888888888888740    


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR  380 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~  380 (408)
                                     -.. ...-..++|.|...+.++++++|..++++++.++..-..  .......++.|..++. ..+
T Consensus       511 ---------------~~~-~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~--~~~~~~~~p~l~~l~~-d~d  571 (588)
T 1b3u_A          511 ---------------CGQ-DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN--STLQSEVKPILEKLTQ-DQD  571 (588)
T ss_dssp             ---------------HHH-HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTT-CSS
T ss_pred             ---------------cCH-HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch--hhhHHHHHHHHHHHcC-CCc
Confidence                           001 112346889999999999999999999999999875221  1223345667777655 445


Q ss_pred             HHHHHHHHHHHh
Q 041050          381 EDIRSLAHRTLS  392 (408)
Q Consensus       381 ~~~~~~A~~~L~  392 (408)
                      .+++..|.+++.
T Consensus       572 ~~vr~~a~~al~  583 (588)
T 1b3u_A          572 VDVKYFAQEALT  583 (588)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            577777776664

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.51  E-value=3.5e-05  Score=66.81  Aligned_cols=187  Identities=20%  Similarity=0.222  Sum_probs=143.0

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ...+..++.+|..+-=.++.+|..++.+++. .++..+.+     +.+|+.+++.++..+.....+.+++.++...|+..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            3457888999988888999999999999998 67776554     56788888777777776777889999988767665


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC  296 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~  296 (408)
                      ..+     +|.|..-. .-.+|.++.....+|..++ .||..-..+.     .-+..|+.++|..=+-.|...+..+.. 
T Consensus       106 ~~v-----Vp~lfany-rigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smltskd~~Dkl~aLnFi~alGe-  173 (253)
T 2db0_A          106 KSM-----IPVLFANY-RIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLSSKNREDKLTALNFIEAMGE-  173 (253)
T ss_dssp             HHH-----HHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTSCSSHHHHHHHHHHHHTCCT-
T ss_pred             Hhh-----HHHHHHHH-hcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhcCCChHHHHHHHHHHHHHhc-
Confidence            544     67776665 4569999999999999998 7887755554     348889988886555556666666654 


Q ss_pred             chhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH
Q 041050          297 ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI  363 (408)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~  363 (408)
                                      .+..+     -.-.+|.|..+|...+.-||..|+.+|.+++.-.+..+.++
T Consensus       174 ----------------n~~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii  219 (253)
T 2db0_A          174 ----------------NSFKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV  219 (253)
T ss_dssp             ----------------TTHHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             ----------------cCccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH
Confidence                            12221     12478999999999999999999999999999866555543

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.51  E-value=1.2e-06  Score=87.07  Aligned_cols=228  Identities=14%  Similarity=0.092  Sum_probs=148.0

Q ss_pred             CHHHHHHhhcCC--CHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          141 GLHKILSLLESE--DANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       141 ~v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      .++.++..+.++  +..+|..|++++.++... ..+- ......-.++.+...+. +.++.++..++.+|..++...+..
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vr~~~~~~l~~l~~~~~~~  251 (462)
T 1ibr_B          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQY  251 (462)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            356677888876  799999999999987642 2111 01111112555556665 468899999999999998653322


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHH------------------HHHh---cccHHHHHHhh
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQM------------------KLRS---EGGIRALLGMV  275 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~------------------~i~~---~g~l~~L~~lL  275 (408)
                      -...+..+.++.++..+ ...++.++..++.++.+++.......                  .+.+   ...++.++..+
T Consensus       252 ~~~~~~~~l~~~~~~~~-~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l  330 (462)
T 1ibr_B          252 METYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (462)
T ss_dssp             CTTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHH
Confidence            11112214566666666 56788999999999999884321100                  0111   23456666666


Q ss_pred             cC-------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050          276 RC-------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA  348 (408)
Q Consensus       276 ~~-------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a  348 (408)
                      ..       ++..++..|+.+|..++..               .|  +   .+. ..+++.+...+.+.++.+|..|+.+
T Consensus       331 ~~~d~d~~~~~~~~r~~a~~~L~~l~~~---------------~~--~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~  389 (462)
T 1ibr_B          331 TKQDENDDDDDWNPCKAAGVCLMLLATC---------------CE--D---DIV-PHVLPFIKEHIKNPDWRYRDAAVMA  389 (462)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHH---------------TT--T---THH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHh---------------cc--H---HHH-HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            42       2356888899999998851               11  1   112 2467788888899999999999999


Q ss_pred             HHHHccCch-h-HHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          349 LCHLAQHEV-N-AREMISGGALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       349 L~~La~~~~-~-~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      ++.++.+.. . .... -..+++.|+..+.++. ..+|..|.++|..
T Consensus       390 l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~  434 (462)
T 1ibr_B          390 FGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGR  434 (462)
T ss_dssp             HHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred             HHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            999998632 1 1111 2568899999998655 5677777766644

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.49  E-value=1.3e-08  Score=84.51  Aligned_cols=120  Identities=18%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             hCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhH
Q 041050          180 AGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ  259 (408)
Q Consensus       180 ~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~  259 (408)
                      ...++.|+.+|.+ +++.+|..|+++|+++...            .++.|+.+| .++++.++..++++|+++..     
T Consensus        11 ~~~~~~l~~~L~~-~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L-~d~~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           11 SSGLVPRGSHMAD-ENKWVRRDVSTALSRMGDE------------AFEPLLESL-SNEDWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             ----------CCS-SCCCSSSSCCSSTTSCSST------------THHHHHHGG-GCSCHHHHHHHHHHHGGGCS-----
T ss_pred             cccHHHHHHHhcC-CCHHHHHHHHHHHHHhCch------------HHHHHHHHH-cCCCHHHHHHHHHHHHhcCC-----
Confidence            4467888999984 6778999898888876533            368899998 46889999999999998863     


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAA  339 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~  339 (408)
                           ...++.|..++.++++.|+..|+++|.++..                            ..+++.|+.+++++++
T Consensus        72 -----~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------------------------~~a~~~L~~~l~d~~~  118 (131)
T 1te4_A           72 -----ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------------------------ERVRAAMEKLAETGTG  118 (131)
T ss_dssp             -----HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------------------------HHHHHHHHHHTTSCCT
T ss_pred             -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------------------------HHHHHHHHHHHhCCCH
Confidence                 2357889999999999999999999999852                            2368899999998899


Q ss_pred             HHHHHHHHHHHH
Q 041050          340 PIRRHIELALCH  351 (408)
Q Consensus       340 ~v~~~a~~aL~~  351 (408)
                      .+|..|+.+|..
T Consensus       119 ~vr~~A~~aL~~  130 (131)
T 1te4_A          119 FARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHh
Confidence            999999998865

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.49  E-value=5.1e-06  Score=86.92  Aligned_cols=219  Identities=14%  Similarity=0.052  Sum_probs=131.1

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ++.+..+|++.++.+|..|+.++.++.. .++...     +.++.+..+|. +.++.++..|+++|..++..+++....+
T Consensus       144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~-D~d~~V~~~Al~~L~~i~~~~~~~~~~~  217 (618)
T 1w63_A          144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLN-EKNHGVLHTSVVLLTEMCERSPDMLAHF  217 (618)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTT-CCCHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhC-CCCHhHHHHHHHHHHHHHHhChHHHHHH
Confidence            6777788999999999999999999987 554332     45777888887 5789999999999999998744432233


Q ss_pred             HhcCcHHHHHHHhhc--------------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc------CCC
Q 041050          221 MAQGGISLLSTTAAD--------------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR------CGH  279 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~--------------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~------~~~  279 (408)
                      .  ..+|.++.+|.+              ..+|-.+..++.++..++ .++.....     ..+.|..++.      +.+
T Consensus       218 ~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          218 R--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             H--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSSTHH
T ss_pred             H--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccchH
Confidence            2  467878777643              347788888888888888 44332221     2222333321      122


Q ss_pred             HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccC--ChhhHHHHHh-------------cCcHHHHHHhccCCCHHHHHH
Q 041050          280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATG--VKSGRSLLIE-------------DGALPWIVQNANNEAAPIRRH  344 (408)
Q Consensus       280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~--~~~~~~~i~~-------------~g~l~~Lv~lL~~~~~~v~~~  344 (408)
                      ..+...|++++..+.. .+......+..++.|..  +++.+.....             ....+.+..++.+++..+|..
T Consensus       291 ~aV~~ea~~~i~~l~~-~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~d~~Ir~~  369 (618)
T 1w63_A          291 NAILYETVLTIMDIKS-ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDLDVSIKRR  369 (618)
T ss_dssp             HHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCCChhHHHH
Confidence            3455555555555431 11111111122222211  1111111110             124456777778788888888


Q ss_pred             HHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCH
Q 041050          345 IELALCHLAQHEVNAREMISGGALWELVRISRDCSR  380 (408)
Q Consensus       345 a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~  380 (408)
                      |..+|..++...+- ..+     +..|...+.+.+.
T Consensus       370 alelL~~l~~~~nv-~~i-----v~eL~~~l~~~d~  399 (618)
T 1w63_A          370 AMELSFALVNGNNI-RGM-----MKELLYFLDSCEP  399 (618)
T ss_dssp             HHHHHHHHCCSSST-HHH-----HHHHHHHHHHCCH
T ss_pred             HHHHHHHHcccccH-HHH-----HHHHHHHHHhCCH
Confidence            88888888876432 222     3566666665443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.46  E-value=1.7e-08  Score=83.86  Aligned_cols=120  Identities=19%  Similarity=0.141  Sum_probs=90.5

Q ss_pred             hcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          139 QVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       139 ~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ...++.++.+|+++++.+|..|+++|+++..           ..++.|+.+|. ++++.+|..|+++|+++...      
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~-d~~~~vR~~A~~aL~~~~~~------   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLS-NEDWRIRGAAAWIIGNFQDE------   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGG-CSCHHHHHHHHHHHGGGCSH------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCH------
Confidence            3457888899999999999999999887643           13788999998 57899999999999988642      


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN  292 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n  292 (408)
                           ..++.|+.++ +++++.++..++++|.++..          ..+++.|..+++++++.++..|+++|..
T Consensus        73 -----~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 -----RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 2578888888 45788999999999998852          3467888899988999999999988865

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.43  E-value=3.1e-06  Score=88.60  Aligned_cols=230  Identities=13%  Similarity=0.089  Sum_probs=151.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..+.+-|.++++.+|..|+++|+++.. +    .+.+ ..++.+..+|. +.++.+|+.|+.+++++...+|+...   
T Consensus       109 in~l~kDL~~~n~~vr~lAL~~L~~i~~-~----~~~~-~l~~~l~~~L~-~~~~~VRk~A~~al~~l~~~~p~~v~---  178 (618)
T 1w63_A          109 TNCIKNDLNHSTQFVQGLALCTLGCMGS-S----EMCR-DLAGEVEKLLK-TSNSYLRKKAALCAVHVIRKVPELME---  178 (618)
T ss_dssp             HHHHHHHHSCSSSHHHHHHHHHHHHHCC-H----HHHH-HHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHCGGGGG---
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHhcCC-H----HHHH-HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHChHHHH---
Confidence            5677778889999999999999999985 2    2322 35788899998 47899999999999999876465432   


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhc---------------CCCHHHHHH
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVR---------------CGHPDVLSQ  285 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~---------------~~~~~v~~~  285 (408)
                        +.++.+..++ .+.++.++..|+.+|..++.. ++....+.  ..++.++.+|.               ..+|..+..
T Consensus       179 --~~~~~l~~lL-~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          179 --MFLPATKNLL-NEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             --GGGGGTTTST-TCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             --HHHHHHHHHh-CCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence              4567777787 568899999999999999943 33323332  56777777664               258889888


Q ss_pred             HHHHHHHhhccchhhhhH---HHhhhhhcc---CCh------hhHHHHHh--------cCcHHHHHHhccCCCHHHHHHH
Q 041050          286 VARGIANFAKCESRAATQ---VRFIRCTAT---GVK------SGRSLLIE--------DGALPWIVQNANNEAAPIRRHI  345 (408)
Q Consensus       286 a~~aL~nL~~~~~~~~~~---~~~~i~~~~---~~~------~~~~~i~~--------~g~l~~Lv~lL~~~~~~v~~~a  345 (408)
                      +..+|+.++..+++....   +...++.-.   .+.      +....+..        ..+++.|..++.+.++++|..|
T Consensus       254 il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~a  333 (618)
T 1w63_A          254 ILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVA  333 (618)
T ss_dssp             HHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            999999998644332211   111111100   000      00011111        1356677777777778888888


Q ss_pred             HHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          346 ELALCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       346 ~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      ..+|..++...+.   ++. .....+...+.+ ++..++..|..+|
T Consensus       334 L~~L~~i~~~~p~---~~~-~~~~~i~~~l~d-~d~~Ir~~alelL  374 (618)
T 1w63_A          334 LTSLLKTVQTDHN---AVQ-RHRSTIVDCLKD-LDVSIKRRAMELS  374 (618)
T ss_dssp             HHHHHHHHHHHHH---HHG-GGHHHHHHGGGS-SCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCHH---HHH-HHHHHHHHHccC-CChhHHHHHHHHH
Confidence            8888887764221   222 245566666664 3456777777554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.34  E-value=2.8e-06  Score=84.31  Aligned_cols=190  Identities=9%  Similarity=0.107  Sum_probs=129.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-  219 (408)
                      ++.+...+.++++++|..++++|..++. .+..-...+..+.++.++..+. +.++.++..|+.++.+++.. ...... 
T Consensus       219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~a~~~l~~~~~~-~~~~~~~  296 (462)
T 1ibr_B          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDE-EMDLAIE  296 (462)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHH-HHHHHHh
Confidence            4555566778899999999999999986 3221111111144677777777 46889999999999988765 311110 


Q ss_pred             -----------------HHh---cCcHHHHHHHhhcC------CCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHH
Q 041050          220 -----------------IMA---QGGISLLSTTAADA------EDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       220 -----------------i~~---~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~  272 (408)
                                       +++   ...+|.++..+.+.      ++..++..++.+|..++. .++   .+. ...++.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~  372 (462)
T 1ibr_B          297 ASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIK  372 (462)
T ss_dssp             HCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHH
T ss_pred             cccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHH
Confidence                             111   22455666666432      234688899999999982 221   122 24567777


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH  351 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~  351 (408)
                      ..+.++++.++..|+.+++.++.                 |.. +...... ..++|.++..+.++++.+|..|+++|++
T Consensus       373 ~~l~~~~~~~r~aal~~l~~l~~-----------------~~~~~~~~~~l-~~~~~~l~~~l~d~~~~Vr~~a~~~l~~  434 (462)
T 1ibr_B          373 EHIKNPDWRYRDAAVMAFGCILE-----------------GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (462)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSS-----------------SSCTTTTCTTT-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             HHhcCCChHHHHHHHHHHHHHhc-----------------CCcHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            88888999999999999999985                 221 1100111 4689999999999999999999999999


Q ss_pred             HccC
Q 041050          352 LAQH  355 (408)
Q Consensus       352 La~~  355 (408)
                      ++..
T Consensus       435 ~~~~  438 (462)
T 1ibr_B          435 ICEL  438 (462)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9975

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.32  E-value=2.7e-05  Score=77.59  Aligned_cols=208  Identities=11%  Similarity=0.104  Sum_probs=140.2

Q ss_pred             HHHhhcC-CCHHHHHHHHHHHHHHcCCchhHHHHHHhCC--HHHHHHHHcC----------------CCCHHHHHHHHHH
Q 041050          145 ILSLLES-EDANVRIHAVKVVANLAAEEANQEKIVEAGG--LSSLLMLLRS----------------FEDETIRRVAAGA  205 (408)
Q Consensus       145 Ll~lL~s-~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~--i~~L~~lL~~----------------~~~~~v~~~A~~a  205 (408)
                      ++..|.. ++.+.+..++..|..|...++.|..+.+.++  +|+++.++..                ....+++..++.+
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~  251 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLL  251 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHH
Confidence            3444444 3566677899999999999999999987655  6777654431                1136778889999


Q ss_pred             HHHhccCChhhHHHHHhcCcH--HHHHHHhhcCCCHHHHHHHHHHHHHHhCCc-----hh-HHHHHhcccHHHHHHhhc-
Q 041050          206 IANLAMNAEANQELIMAQGGI--SLLSTTAADAEDPQTLRMVAGAIANLCGND-----KL-QMKLRSEGGIRALLGMVR-  276 (408)
Q Consensus       206 L~nLa~~~~~~~~~i~~~g~i--~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~-----~~-~~~i~~~g~l~~L~~lL~-  276 (408)
                      +|-|+.+ +...+.+...+..  +.|+.+++.+..+.+.|.++.++.|+....     .. .+.+.-.++++ ++..|. 
T Consensus       252 iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~  329 (480)
T 1ho8_A          252 IWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALP-TVQSLSE  329 (480)
T ss_dssp             HHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHH-HHHHHHS
T ss_pred             HHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchH-HHHHHhh
Confidence            9999999 8888888877644  577788888888999999999999998432     11 22333344555 555442 


Q ss_pred             --CCCHHHHHH-------------------------------------------------------HHHHHHHhhccc--
Q 041050          277 --CGHPDVLSQ-------------------------------------------------------VARGIANFAKCE--  297 (408)
Q Consensus       277 --~~~~~v~~~-------------------------------------------------------a~~aL~nL~~~~--  297 (408)
                        -.|+++...                                                       ....|..+-...  
T Consensus       330 rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~  409 (480)
T 1ho8_A          330 RKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR  409 (480)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcc
Confidence              356666542                                                       223333332100  


Q ss_pred             ------hhhhhHHHhh---hhhcc-CChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          298 ------SRAATQVRFI---RCTAT-GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       298 ------~~~~~~~~~~---i~~~~-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                            ++....+.=|   |+.|. .+|.++..+.+.|+=..+++++.+++++|+.+|..|+..+..
T Consensus       410 ~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          410 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                  0111011000   22221 468888888899999999999999999999999999987643

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.29  E-value=3.9e-06  Score=76.78  Aligned_cols=183  Identities=16%  Similarity=0.174  Sum_probs=131.3

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-hhhHHHH
Q 041050          144 KILSLLESEDANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-EANQELI  220 (408)
Q Consensus       144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~~~~~~i  220 (408)
                      .+.+.+.+.+-..|..|+..|..+... +... ..+  ...++.|..++..+.+..++..|+.++..|+..- +.... .
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            467788899999999999999988653 3211 011  1126677778842468999999999999998641 11111 1


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      + ...+|.|+..+ .+..+.++..+..+|.+++.+....      ..++.+...+.++++.++..++..|..+...    
T Consensus        96 ~-~~ilp~ll~~l-~d~~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~----  163 (242)
T 2qk2_A           96 A-SACVPSLLEKF-KEKKPNVVTALREAIDAIYASTSLE------AQQESIVESLSNKNPSVKSETALFIARALTR----  163 (242)
T ss_dssp             H-HHHHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT----
T ss_pred             H-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHH----
Confidence            1 22578888887 5577899999999999998654321      3466688888889999999999999996531    


Q ss_pred             hhHHHhhhhhccCChh--hHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          301 ATQVRFIRCTATGVKS--GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~--~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                                  ..++  ....+ . .++|.|+.++.+.++++|..|..+++.++..
T Consensus       164 ------------~~~~~~~~~~l-~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          164 ------------TQPTALNKKLL-K-LLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             ------------CCGGGCCHHHH-H-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             ------------cCCCCccHHHH-H-HHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence                        1111  11122 2 5889999999999999999999999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.20  E-value=1.6e-05  Score=85.64  Aligned_cols=223  Identities=10%  Similarity=0.061  Sum_probs=145.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN----  216 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~----  216 (408)
                      ++.+...+.+++.++|..++.+|..++. .+..-...+....++.++..+. +.++.++..|+.++.+++.. ...    
T Consensus       219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~v~~~al~~l~~l~~~-~~~~~~~  296 (876)
T 1qgr_A          219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDE-EMDLAIE  296 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHH-HHhHhhh
Confidence            5556677778889999999999999886 4433222333345788888776 46789999999999888764 210    


Q ss_pred             ------------------HHHHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHH
Q 041050          217 ------------------QELIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       217 ------------------~~~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~  272 (408)
                                        ..... ...++.++..+..      +++..++..++.++..++..-.  ..+. ...++.+.
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~  372 (876)
T 1qgr_A          297 ASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIK  372 (876)
T ss_dssp             HHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHH
T ss_pred             hccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHH
Confidence                              00001 2235666677642      2345688888888888872211  1112 24556667


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCH  351 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~  351 (408)
                      ..+.++++.++..|++++++++.                 +.. +...... ..++|.++..+.++++.+|..|+++|.+
T Consensus       373 ~~l~~~~~~~r~~a~~~l~~i~~-----------------~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~  434 (876)
T 1qgr_A          373 EHIKNPDWRYRDAAVMAFGCILE-----------------GPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGR  434 (876)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTSS-----------------SSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHccCCChHHHHHHHHHHHHHHc-----------------CCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            77788899999999999999985                 332 2222222 3488999999999999999999999999


Q ss_pred             HccCchhH---HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          352 LAQHEVNA---REMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       352 La~~~~~~---~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      ++......   ... -...++.|...+.+.  ..++..|.+++
T Consensus       435 ~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~--~~v~~~a~~al  474 (876)
T 1qgr_A          435 ICELLPEAAINDVY-LAPLLQCLIEGLSAE--PRVASNVCWAF  474 (876)
T ss_dssp             HHHHCGGGTSSTTT-HHHHHHHHHHHTTSC--HHHHHHHHHHH
T ss_pred             HHHhCchhcccHHH-HHHHHHHHHHHHcCC--HHHHHHHHHHH
Confidence            99752210   000 123566777777653  44455555443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.19  E-value=4.6e-05  Score=81.98  Aligned_cols=226  Identities=14%  Similarity=0.124  Sum_probs=146.6

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHcC-CchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          142 LHKILSLLESE--DANVRIHAVKVVANLAA-EEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       142 v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~-~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ++.++..+.++  +..+|..|+.++.+++. -+.+- ........++.+...+. +++..++..++.+|..++...+..-
T Consensus       174 l~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~~vr~~a~~~l~~l~~~~~~~~  252 (876)
T 1qgr_A          174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            45566677765  68999999999999875 22111 11111123566666665 4678999999999999887544433


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh-------------------HHHHH--hcccHHHHHHhhc
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL-------------------QMKLR--SEGGIRALLGMVR  276 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~-------------------~~~i~--~~g~l~~L~~lL~  276 (408)
                      ...+....++.++..+ .+.++.++..++.++.+++.....                   ...+.  -...++.++..+.
T Consensus       253 ~~~~~~~l~~~~~~~~-~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~  331 (876)
T 1qgr_A          253 ETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             HHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhh
Confidence            3333445677777776 567889999999999988743210                   00000  0234566677664


Q ss_pred             -------CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050          277 -------CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       277 -------~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                             +++..++..|+.++..++..                 ..+   .+.. .+++.+...+.+.++.+|..|++++
T Consensus       332 ~~~~d~~~~~~~~r~~a~~~l~~l~~~-----------------~~~---~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l  390 (876)
T 1qgr_A          332 KQDENDDDDDWNPCKAAGVCLMLLATC-----------------CED---DIVP-HVLPFIKEHIKNPDWRYRDAAVMAF  390 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHH-----------------HGG---GGHH-HHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             cccccccccccHHHHHHHHHHHHHHHH-----------------CcH---hhHH-HHHHHHHHHccCCChHHHHHHHHHH
Confidence                   23457888888999998851                 111   1122 4677778888888999999999999


Q ss_pred             HHHccCch--hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          350 CHLAQHEV--NAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       350 ~~La~~~~--~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      +.++.+..  ...... ...++.|+..+.+.. ..++..|.+++.
T Consensus       391 ~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~-~~vr~~a~~~l~  433 (876)
T 1qgr_A          391 GCILEGPEPSQLKPLV-IQAMPTLIELMKDPS-VVVRDTAAWTVG  433 (876)
T ss_dssp             HHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSS-HHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            99998743  222222 347888888887544 456666665554

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.13  E-value=0.00014  Score=78.03  Aligned_cols=223  Identities=9%  Similarity=0.093  Sum_probs=142.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch-hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh---
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEA-NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN---  216 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~-~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~---  216 (408)
                      ++.+...+.+++..+|..++.+|..++. .+. ....+ ....++.++..+. +.++.++..|+.++..++.. ...   
T Consensus       226 l~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~-~~~~~vr~~a~~~l~~l~~~-~~~~~~  302 (861)
T 2bpt_A          226 MQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMK-SPNDKVASMTVEFWSTICEE-EIDIAY  302 (861)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHH-HHhhhh
Confidence            4455566778899999999999999886 232 22222 2134566666776 46789999999999988775 211   


Q ss_pred             ---------------HHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh
Q 041050          217 ---------------QELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV  275 (408)
Q Consensus       217 ---------------~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL  275 (408)
                                     ...++ ...+|.++..+...      ++..++..+..+|..++..-.  ..+. ...++.+...+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~~l~~~l~~~l  378 (861)
T 2bpt_A          303 ELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-EPVLEFVEQNI  378 (861)
T ss_dssp             HHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHT
T ss_pred             hhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-HHHHHHHHHHc
Confidence                           11111 33567777777532      235788899999999873211  0111 13455666777


Q ss_pred             cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCCh-hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          276 RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVK-SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       276 ~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~-~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      .++++.++..++++++.++.                 +.. +......+ .+++.|+..+.++++.+|..++++++.++.
T Consensus       379 ~~~~~~~r~~a~~~l~~i~~-----------------~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T 2bpt_A          379 TADNWRNREAAVMAFGSIMD-----------------GPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             TCSSHHHHHHHHHHHHHTSS-----------------SSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHc-----------------CCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            78889999999999999985                 321 22222222 478899999999999999999999999886


Q ss_pred             Cc-hhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          355 HE-VNA-REMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       355 ~~-~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      .- ... ..-.-...++.|+..+.+.  ..++..|.+++
T Consensus       441 ~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al  477 (861)
T 2bpt_A          441 SVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTI  477 (861)
T ss_dssp             HHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred             HhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHH
Confidence            41 100 0000112466677767653  44555554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.08  E-value=9.2e-05  Score=79.77  Aligned_cols=178  Identities=11%  Similarity=0.107  Sum_probs=118.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      ++.|.+++.+++..++..|+.+|+.+-.+..+..      .+..|+..+.++.+..+++.++.+|+.+....++..+.++
T Consensus       474 ~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li  547 (963)
T 4ady_A          474 YEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLI  547 (963)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHH
Confidence            7888899988888888889999987743332222      2455555554456778888888888877654343322221


Q ss_pred             -----------hcC----------------cHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHH
Q 041050          222 -----------AQG----------------GISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLG  273 (408)
Q Consensus       222 -----------~~g----------------~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~  273 (408)
                                 ..|                .|..|+..+.++.+..+++.|+-+|+.++ +++         ..++.++.
T Consensus       548 ~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~  618 (963)
T 4ady_A          548 TKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQ  618 (963)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTT
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHH
Confidence                       111                13334444445556677777777777765 443         23444565


Q ss_pred             hh-cCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          274 MV-RCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       274 lL-~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      ++ ++.++.++..|+.+|+.++.                 |++..       .++..|..++++.+..||..|+.+|+.+
T Consensus       619 ~L~~~~d~~VR~gAalALGli~a-----------------Gn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          619 LLSKSHNAHVRCGTAFALGIACA-----------------GKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             TGGGCSCHHHHHHHHHHHHHHTS-----------------SSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhcc-----------------CCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence            44 67788899999999988875                 44431       3566788888889999999999999999


Q ss_pred             ccCchh
Q 041050          353 AQHEVN  358 (408)
Q Consensus       353 a~~~~~  358 (408)
                      ..+..+
T Consensus       675 g~gtnn  680 (963)
T 4ady_A          675 LIQQTE  680 (963)
T ss_dssp             STTCCT
T ss_pred             hcCCcc
Confidence            887544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.06  E-value=0.0004  Score=74.87  Aligned_cols=189  Identities=19%  Similarity=0.120  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          153 DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      ++.+|..|+..|+-+..+..+.      ..++.|..++.+ ++..++..|+.+|+.+-.. ..+.+      .+..|+..
T Consensus       450 ~~~ir~gAaLGLGla~~GS~~e------ev~e~L~~~L~d-d~~~~~~~AalALGli~vG-Tgn~~------ai~~LL~~  515 (963)
T 4ady_A          450 VDVLLHGASLGIGLAAMGSANI------EVYEALKEVLYN-DSATSGEAAALGMGLCMLG-TGKPE------AIHDMFTY  515 (963)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCH------HHHHHHHHHHHT-CCHHHHHHHHHHHHHHHTT-CCCHH------HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHhc-CCHHHHHHHHHHHhhhhcc-cCCHH------HHHHHHHH
Confidence            3678888999998875433222      135667888874 4566777888888876332 22221      23445554


Q ss_pred             hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHh-----------cc----------------cHHHHHHhh-cCCCHHHH
Q 041050          233 AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRS-----------EG----------------GIRALLGMV-RCGHPDVL  283 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~-----------~g----------------~l~~L~~lL-~~~~~~v~  283 (408)
                      +.+..+..+++.++.+|+.+. ++++....+++           .|                .++.|+..+ .+.+.+++
T Consensus       516 ~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VR  595 (963)
T 4ady_A          516 SQETQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVR  595 (963)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHH
T ss_pred             HhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHH
Confidence            445566677877888887776 55444332211           01                122233322 23444555


Q ss_pred             HHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh-ccCCCHHHHHHHHHHHHHHccCchhHHHH
Q 041050          284 SQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN-ANNEAAPIRRHIELALCHLAQHEVNAREM  362 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l-L~~~~~~v~~~a~~aL~~La~~~~~~~~l  362 (408)
                      +.|+.+|+.+..                 |++         ..++.++.+ +++.++.+|..|+++|+.++.+..+..  
T Consensus       596 raAViaLGlI~~-----------------g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~--  647 (963)
T 4ady_A          596 RAAVIALGFVLL-----------------RDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS--  647 (963)
T ss_dssp             HHHHHHHHHHTS-----------------SSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred             HHHHHHHHhhcc-----------------CCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence            555555555543                 332         357777774 467899999999999999988754421  


Q ss_pred             HhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          363 ISGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       363 ~~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                          ++..|..++.+. +++++..|.
T Consensus       648 ----aid~L~~L~~D~-d~~Vrq~Ai  668 (963)
T 4ady_A          648 ----AIDVLDPLTKDP-VDFVRQAAM  668 (963)
T ss_dssp             ----HHHHHHHHHTCS-SHHHHHHHH
T ss_pred             ----HHHHHHHHccCC-CHHHHHHHH
Confidence                356677777644 444554454

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.04  E-value=1.8e-05  Score=88.96  Aligned_cols=219  Identities=12%  Similarity=0.133  Sum_probs=144.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh---
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN---  216 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~---  216 (408)
                      .++.+++.|.+.+..+|..|+.+|.+++.. +.  . .. ...++.|+..+.+ +++.+|..|+.+|..++...+..   
T Consensus        49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~-~~-~~i~~~Ll~~l~d-~~~~vR~~a~~~L~~i~~~l~~~~~~  123 (1230)
T 1u6g_C           49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y-QV-ETIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG  123 (1230)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H-HH-HHHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H-HH-HHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHhCCCcccc
Confidence            467888999999999999999999999862 22  1 11 1246777888774 56688999999999887542221   


Q ss_pred             ---HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          217 ---QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       217 ---~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                         .... -...+|.|+..+.+++++.++..++.++..++.  .+.....+  ...++.++..+.++++.++..|+.++.
T Consensus       124 ~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~  200 (1230)
T 1u6g_C          124 SALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALG  200 (1230)
T ss_dssp             CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence               1111 223578888888545788999999999999982  11111111  345667788888889999999999999


Q ss_pred             HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC-CHHHHHHHHHHHHHHccCchhHHHHH--hCCcH
Q 041050          292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE-AAPIRRHIELALCHLAQHEVNAREMI--SGGAL  368 (408)
Q Consensus       292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~~~~~l~--~~g~i  368 (408)
                      .++.                 ..++   .+ -..+++.++..+... +..++..++.++..++.....  .+.  -...+
T Consensus       201 ~l~~-----------------~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~  257 (1230)
T 1u6g_C          201 HLVM-----------------SCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKII  257 (1230)
T ss_dssp             HHTT-----------------TC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHH
T ss_pred             HHHH-----------------hcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Confidence            9985                 1111   11 124678888877554 346777888888888764211  111  24577


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHH
Q 041050          369 WELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       369 ~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      +.+...+.+. ++++|..|..++
T Consensus       258 ~~ll~~l~d~-~~~vR~~a~~~l  279 (1230)
T 1u6g_C          258 PLVVKFCNVD-DDELREYCIQAF  279 (1230)
T ss_dssp             HHHHHHHSSC-CTTTHHHHHHHH
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHH
Confidence            7888877743 334555555433

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.04  E-value=0.00045  Score=62.21  Aligned_cols=185  Identities=14%  Similarity=0.037  Sum_probs=142.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      .+..++++|...|+.++..++.+|..+-.  +...+..+++. .++.++.++. +.|..+.-.|+.+|..|-.+-|-..+
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~-~Ld~iI~llk-~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFINALS-QENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTCC-STTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHH-HHHHHHHHHh-ccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            47888899999999999999999999876  35556566655 7999999998 57889999999999988776454444


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccch
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCES  298 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~  298 (408)
                      .+..  .+..|..++. +.++-++..++..+.-+--- ..-     .+.+..+.+++.++|+.++..+.+++.|++.   
T Consensus       112 ~y~K--l~~aL~dlik-~~~~il~~eaae~Lgklkv~-~~~-----~~V~~~l~sLl~Skd~~vK~agl~~L~eia~---  179 (265)
T 3b2a_A          112 TFLK--AAKTLVSLLE-SPDDMMRIETIDVLSKLQPL-EDS-----KLVRTYINELVVSPDLYTKVAGFCLFLNMLN---  179 (265)
T ss_dssp             HHHH--HHHHHHHHTT-SCCHHHHHHHHHHHHHCCBS-CCC-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGG---
T ss_pred             HHHH--HHHHHHHHhc-CCCchHHHHHHHHhCcCCcc-cch-----HHHHHHHHHHHhCCChhHHHHHHHHHHHhhc---
Confidence            4443  3567888874 78888999999999888311 111     2345568888899999999999999999985   


Q ss_pred             hhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          299 RAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       299 ~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                                  +.+++...     .+++.-+-.+++++++.++..|..++-.+.+.+
T Consensus       180 ------------~S~D~~i~-----~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          180 ------------SSADSGHL-----TLILDEIPSLLQNDNEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             ------------GCSSCCCG-----GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             ------------ccCCHHHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence                        11222221     245667778899999999999999999988873

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=97.97  E-value=0.00021  Score=76.68  Aligned_cols=225  Identities=15%  Similarity=0.149  Sum_probs=142.5

Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHHHHHHcC-CchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          142 LHKILSLLESE--DANVRIHAVKVVANLAA-EEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       142 v~~Ll~lL~s~--~~~v~~~A~~aL~nLa~-~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ++.++..+.++  +..+|..|+.++.++.. -+.+- ........++.|...+. +.+..++..++.+|..++...+..-
T Consensus       181 l~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~~r~~a~~~l~~l~~~~~~~~  259 (861)
T 2bpt_A          181 LIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQ-AEDIEVQAAAFGCLCKIMSKYYTFM  259 (861)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566677766  89999999999998753 21110 00001113566666676 4688999999999998876523221


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchh------------------HHHHHhcccHHHHHHhhcC--
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL------------------QMKLRSEGGIRALLGMVRC--  277 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~------------------~~~i~~~g~l~~L~~lL~~--  277 (408)
                      ...+....++.+...+ .+.++.++..++.++..++.....                  ..... ...++.++..+..  
T Consensus       260 ~~~l~~~l~~~~~~~~-~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~  337 (861)
T 2bpt_A          260 KPYMEQALYALTIATM-KSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQN  337 (861)
T ss_dssp             HHHHHHTHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcc
Confidence            1222224455566665 567889999999999998843211                  11111 3466777777753  


Q ss_pred             -----CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          278 -----GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       278 -----~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                           +++.++..++.+|..++.+-               + +.    +. ..+++.+.+.+.+.++.+|..|+++++.+
T Consensus       338 ~d~~d~~~~~r~~a~~~L~~l~~~~---------------~-~~----~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i  396 (861)
T 2bpt_A          338 EDPEDDDWNVSMSAGACLQLFAQNC---------------G-NH----IL-EPVLEFVEQNITADNWRNREAAVMAFGSI  396 (861)
T ss_dssp             CC-CCCCCHHHHHHHHHHHHHHHHH---------------G-GG----GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred             cccccccCcHHHHHHHHHHHHHHHc---------------c-Hh----HH-HHHHHHHHHHcCCCChhHHHHHHHHHHHH
Confidence                 23578888999999988510               1 11    11 13566777788888999999999999999


Q ss_pred             ccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          353 AQHE--VNAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       353 a~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      +.+.  ......+. ..++.|+..+.+. ...++..|.+++.
T Consensus       397 ~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~  436 (861)
T 2bpt_A          397 MDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIG  436 (861)
T ss_dssp             SSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHH
Confidence            9763  22222222 4677888877754 3445555555543

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.90  E-value=0.0012  Score=62.77  Aligned_cols=185  Identities=13%  Similarity=0.115  Sum_probs=135.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHH-HcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVAN-LAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~n-La~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      +..++.-|.+.+...+..++.-|.. ++.+......++..+|+..|+.+... .+..++..++.|+.+|-.+ ...-.-+
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~-~~gN~q~Y~L~AL~~LM~~-v~Gm~gv  197 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAA-ADHNYQSYILRALGQLMLF-VDGMLGV  197 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTT-SCHHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHh-cChHHHHHHHHHHHHHHhc-cccccch
Confidence            5677777778888888999999998 66689999999999999999999985 5889999999999999888 7777666


Q ss_pred             Hh-cCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhc-------c---cHHHHHHhhc---CCCHHHHHH
Q 041050          221 MA-QGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSE-------G---GIRALLGMVR---CGHPDVLSQ  285 (408)
Q Consensus       221 ~~-~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~-------g---~l~~L~~lL~---~~~~~v~~~  285 (408)
                      +. ...|..+..++. +.++.|.+.|+..|..++ .++.+...+.+.       .   -...|+.+|.   +.|.+++-+
T Consensus       198 vs~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          198 VAHSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHCHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hCCHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            64 456778888885 688999999999999999 555454443321       1   2667889996   678898888


Q ss_pred             HHHHHHHhhccchhhhhHHHhhhhhccCChh----hHHHHHhcCcHHHHHHhccCC--CHHHHHH
Q 041050          286 VARGIANFAKCESRAATQVRFIRCTATGVKS----GRSLLIEDGALPWIVQNANNE--AAPIRRH  344 (408)
Q Consensus       286 a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~----~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~  344 (408)
                      |...|-.+-.              . +++.+    ....+-+.|+=..+..++.+.  +++++.+
T Consensus       277 amtLIN~lL~--------------~-apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          277 TVTLINKTLA--------------A-LPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHH--------------H-CSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHh--------------c-CCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            7655544432              1 12223    223334556556667777654  6666554

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=97.84  E-value=0.0006  Score=62.00  Aligned_cols=141  Identities=15%  Similarity=0.101  Sum_probs=108.0

Q ss_pred             HHHHHHhhc-CCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          142 LHKILSLLE-SEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       142 v~~Ll~lL~-s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ++.|...+. +.+..++..|+.+|+.|+.  .+.....+..  .+|.|+..+. +.++.+|..|..+|.+++.. ... .
T Consensus        58 ~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~-d~~~~vr~~a~~aL~~~~~~-~~~-~  132 (242)
T 2qk2_A           58 VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFK-EKKPNVVTALREAIDAIYAS-TSL-E  132 (242)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTT-SCH-H
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHc-CCH-H
Confidence            566778884 8999999999999999986  3333332222  5899999998 46889999999999999876 322 1


Q ss_pred             HHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CC-ch--hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          219 LIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GN-DK--LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       219 ~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~-~~--~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                           ..++.+...+ .+.++.++..++..|..+. .. +.  ....+  ...++.|+.++.++++.++..|..++..++
T Consensus       133 -----~ll~~l~~~l-~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~  204 (242)
T 2qk2_A          133 -----AQQESIVESL-SNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLI  204 (242)
T ss_dssp             -----HHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence                 2356677777 4678999999999999965 32 32  22333  257888999999999999999999999998


Q ss_pred             c
Q 041050          295 K  295 (408)
Q Consensus       295 ~  295 (408)
                      .
T Consensus       205 ~  205 (242)
T 2qk2_A          205 K  205 (242)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.80  E-value=5.9e-05  Score=84.80  Aligned_cols=208  Identities=13%  Similarity=0.112  Sum_probs=138.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-hHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-NQEL  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~~~~  219 (408)
                      ++.++.-+.+++.++|..|...|.+....+... ..-.....++.|+..|. +.++.+|..|+.+|.+++...+. ... 
T Consensus         8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~~~~~-   85 (1230)
T 1u6g_C            8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKEYQVE-   85 (1230)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCHHHHH-
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCHHHHH-
Confidence            677888888999999999999998865422110 00001124677888887 57899999999999999875332 111 


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCch-----hHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDK-----LQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIA  291 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~-----~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~  291 (408)
                          ..++.|+..+ .++++.++..++.+|..++  ..+.     ..... -...++.|...+. ++++.++..|+.++.
T Consensus        86 ----~i~~~Ll~~l-~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l~  159 (1230)
T 1u6g_C           86 ----TIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMA  159 (1230)
T ss_dssp             ----HHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence                2356677776 4566688989999999987  2222     11111 2356788888887 588999999999999


Q ss_pred             HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH
Q 041050          292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL  371 (408)
Q Consensus       292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L  371 (408)
                      .++....+..            .+ +     -..+++.+...+.++++.+|..|+.+|..++......  + -...++.|
T Consensus       160 ~~~~~~~~~l------------~~-~-----~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~-~~~~l~~l  218 (1230)
T 1u6g_C          160 DMLSRQGGLL------------VN-F-----HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--V-FVDLIEHL  218 (1230)
T ss_dssp             HHHHHTCSSC------------TT-T-----HHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHH
T ss_pred             HHHHHhHhHH------------HH-H-----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--H-HHHHHHHH
Confidence            9874100000            00 0     1246778888888889999999999999999763321  1 22346666


Q ss_pred             HHHHhcC
Q 041050          372 VRISRDC  378 (408)
Q Consensus       372 ~~ll~~~  378 (408)
                      +..+...
T Consensus       219 ~~~L~~~  225 (1230)
T 1u6g_C          219 LSELSKN  225 (1230)
T ss_dssp             HHHHHHT
T ss_pred             HHHhccC
Confidence            6665543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.79  E-value=0.00012  Score=67.40  Aligned_cols=189  Identities=13%  Similarity=0.127  Sum_probs=128.1

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHH-HcC-CchhH---HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC--hhhH
Q 041050          145 ILSLLESEDANVRIHAVKVVAN-LAA-EEANQ---EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA--EANQ  217 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~n-La~-~~~~~---~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~  217 (408)
                      +.+.+.+.+-.-|..|+..|.. +.. .+...   ....  ..+..|...+..+.+..++..|+.+|..|+..-  +...
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~--~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS--NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            3456688999999999999999 863 33211   0111  126677778843578899999999999998641  1111


Q ss_pred             -HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          218 -ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       218 -~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                       ....  -.+|.++..+ ....+.++..+..++..++  .++.. ..-.=...++.|...+.++++.++..++.+|..+.
T Consensus        99 ~~y~~--~llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~-~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           99 KDYVS--LVFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLA-SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             HHHHH--HHHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTC-TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccc-cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence             1111  1578888887 4566899999999999998  33211 00000124556888888889999999999999988


Q ss_pred             ccchhhhhHHHhhhhhccCC-hhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          295 KCESRAATQVRFIRCTATGV-KSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~-~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      ...               +. +..-...+...++|.|.+++...++++|..|..+++.++.
T Consensus       175 ~~~---------------~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          175 KEE---------------KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHC---------------CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHc---------------CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            510               11 0111112225789999999999999999999999999874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.78  E-value=0.0017  Score=67.80  Aligned_cols=104  Identities=14%  Similarity=0.093  Sum_probs=80.8

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHH--cCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLL--RSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL--~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      +..+.+=+.++++-+|..|+++|+++.. ++    +.+ ..++.+..+|  . +.++-||+.|+-++..+...+|+... 
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~-~e----~~~-~l~~~v~~~l~~~-d~~~~VRK~A~~al~kl~~~~p~~~~-  184 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS-RE----MAE-AFAGEIPKILVAG-DTMDSVKQSAALCLLRLYRTSPDLVP-  184 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC-HH----HHH-HHTTHHHHHHHCS-SSCHHHHHHHHHHHHHHHHHCGGGCC-
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC-HH----HHH-HHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhChhhcC-
Confidence            4555566779999999999999999965 32    333 2468888888  5 57899999999999999876453322 


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCc
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GND  256 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~  256 (408)
                        ..+.++.|..+| .+.++.+...|+.++..++ .++
T Consensus       185 --~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~~~~  219 (621)
T 2vgl_A          185 --MGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQKNP  219 (621)
T ss_dssp             --CCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             --chhHHHHHHHHh-CCCCccHHHHHHHHHHHHHHhCh
Confidence              247788999998 6789999999999999998 444

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.67  E-value=0.0034  Score=65.53  Aligned_cols=70  Identities=17%  Similarity=0.091  Sum_probs=56.2

Q ss_pred             HHHHHHhh--cCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh
Q 041050          142 LHKILSLL--ESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA  215 (408)
Q Consensus       142 v~~Ll~lL--~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~  215 (408)
                      ++.+.+++  .+.++-+|..|+.++.++.. +|+...   ..+.++.|..+|. +.++.++..|+.++..++.+++.
T Consensus       148 ~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~---~~~~~~~l~~lL~-d~d~~V~~~a~~~l~~i~~~~~~  220 (621)
T 2vgl_A          148 AGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVP---MGDWTSRVVHLLN-DQHLGVVTAATSLITTLAQKNPE  220 (621)
T ss_dssp             TTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCC---CCSCHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcC---chhHHHHHHHHhC-CCCccHHHHHHHHHHHHHHhChH
Confidence            56667888  88999999999999999887 553321   1367899999997 57899999999999999886443

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.67  E-value=0.0003  Score=68.12  Aligned_cols=209  Identities=13%  Similarity=0.070  Sum_probs=108.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +..+.+=+.++++-+|-.|+++|+++...+- .+.     ..+.+.+.|. +.++-||+.|+.+.+.|....|+..+   
T Consensus       106 ~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m-~~~-----l~~~lk~~L~-d~~pyVRk~A~l~~~kL~~~~pe~v~---  175 (355)
T 3tjz_B          106 TSSLTKDMTGKEDSYRGPAVRALCQITDSTM-LQA-----IERYMKQAIV-DKVPSVSSSALVSSLHLLKCSFDVVK---  175 (355)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHHCCTTT-HHH-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHTTTCHHHHH---
T ss_pred             HHHHHhhcCCCcHhHHHHHHHHHhcCCCHHH-HHH-----HHHHHHHHcC-CCCHHHHHHHHHHHHHHhccCHHHHH---
Confidence            5666677788999999999999999876432 111     3566777777 57899999999999999877565432   


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHHHHHh---cc-----------------------------cH
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQMKLRS---EG-----------------------------GI  268 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~~i~~---~g-----------------------------~l  268 (408)
                        +.+..+-+++ .+.++.+..+|.+++..++.++. .-..++.   .+                             .+
T Consensus       176 --~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~  252 (355)
T 3tjz_B          176 --RWVNEAQEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLF  252 (355)
T ss_dssp             --TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-------------
T ss_pred             --HHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHH
Confidence              4677788887 56788888899999998885332 1111110   11                             12


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050          269 RALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA  348 (408)
Q Consensus       269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a  348 (408)
                      +.|...|++.++.|..+|++++..+..                  .+.   ... ..++..|..++.+.++.+|--|...
T Consensus       253 ~~l~~~L~~~~~aVvyEa~k~I~~l~~------------------~~~---~~~-~~a~~~L~~fLss~d~niryvaLr~  310 (355)
T 3tjz_B          253 DFIESCLRNKHEMVVYEAASAIVNLPG------------------CSA---KEL-APAVSVLQLFCSSPKAALRYAAVRT  310 (355)
T ss_dssp             ----CCCCCSSHHHHHHHHHHHTC---------------------------------CCCTHHHHHHSSSSSSHHHHHHC
T ss_pred             HHHHHHHcCCChHHHHHHHHHHHhccC------------------CCH---HHH-HHHHHHHHHHHcCCCchHHHHHHHH
Confidence            223333344455555566666655542                  111   111 2345667777888888888888888


Q ss_pred             HHHHccCchhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHH
Q 041050          349 LCHLAQHEVNAREMISGGALWELVRISRDCSREDIRSLAHRT  390 (408)
Q Consensus       349 L~~La~~~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~  390 (408)
                      |..++...+..-.-    .-..+.+++. .++..++.+|.-+
T Consensus       311 L~~l~~~~P~~v~~----~n~~ie~li~-d~n~sI~t~Aitt  347 (355)
T 3tjz_B          311 LNKVAMKHPSAVTA----CNLDLENLVT-DANRSIATLAITT  347 (355)
T ss_dssp             C-----------------------------------------
T ss_pred             HHHHHHHCcHHHHH----HHHHHHHHcc-CCcHhHHHHHHHH
Confidence            88888764433211    1223344444 3444566666633

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.57  E-value=0.0038  Score=60.33  Aligned_cols=224  Identities=12%  Similarity=0.034  Sum_probs=141.4

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      .+.+++++.+++..++.-..-.+.+++..++-  .+   =++..|.+=+. ++++-+|..|+.+|+++... +-.+ .  
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e--~i---Lv~Nsl~kDl~-~~N~~iR~lALRtL~~I~~~-~m~~-~--  139 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAED--VI---IVTSSLTKDMT-GKEDSYRGPAVRALCQITDS-TMLQ-A--  139 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSC--GG---GGHHHHHHHHH-SSCHHHHHHHHHHHHHHCCT-TTHH-H--
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHH--HH---HHHHHHHhhcC-CCcHhHHHHHHHHHhcCCCH-HHHH-H--
Confidence            46667899999999999999999998875221  11   14677777777 47889999999999999876 3222 1  


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                         ..+.+...+ .+.+|-|+..|+-+..+|. .+++.    + .+++..+-.++.++++.|+.+|..++..+...+..+
T Consensus       140 ---l~~~lk~~L-~d~~pyVRk~A~l~~~kL~~~~pe~----v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a  210 (355)
T 3tjz_B          140 ---IERYMKQAI-VDKVPSVSSSALVSSLHLLKCSFDV----V-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA  210 (355)
T ss_dssp             ---HHHHHHHHH-TCSSHHHHHHHHHHHHHHTTTCHHH----H-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ---HHHHHHHHc-CCCCHHHHHHHHHHHHHHhccCHHH----H-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH
Confidence               234555666 6789999999999999998 55543    2 268888999999999999999999999988644433


Q ss_pred             hhHHHhhhhhc-cCChhhHHHHH--------------hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhC
Q 041050          301 ATQVRFIRCTA-TGVKSGRSLLI--------------EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISG  365 (408)
Q Consensus       301 ~~~~~~~i~~~-~~~~~~~~~i~--------------~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~  365 (408)
                      ...++..+... ..++-.+-.++              ....++.+...+++.++.|..+|+.++..+...+..   . -.
T Consensus       211 ~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~---~-~~  286 (355)
T 3tjz_B          211 VSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK---E-LA  286 (355)
T ss_dssp             HHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH---H-HH
Confidence            32222211110 00111111111              124566777788888999999999999998663221   1 13


Q ss_pred             CcHHHHHHHHhcCCHHHHHHHHHH
Q 041050          366 GALWELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       366 g~i~~L~~ll~~~~~~~~~~~A~~  389 (408)
                      .++..|..++.++++ .++=.|.+
T Consensus       287 ~a~~~L~~fLss~d~-niryvaLr  309 (355)
T 3tjz_B          287 PAVSVLQLFCSSPKA-ALRYAAVR  309 (355)
T ss_dssp             -CCCTHHHHHHSSSS-SSHHHHHH
T ss_pred             HHHHHHHHHHcCCCc-hHHHHHHH
Confidence            345666777764433 44444553

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.57  E-value=0.0064  Score=57.80  Aligned_cols=181  Identities=12%  Similarity=0.031  Sum_probs=126.7

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHH-hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH-
Q 041050          186 LLMLLRSFEDETIRRVAAGAIAN-LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR-  263 (408)
Q Consensus       186 L~~lL~~~~~~~v~~~A~~aL~n-La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~-  263 (408)
                      ++.-|.+ .+...++.++.-|.. ++.+ .+....|+..+|+..|+.... ..+..++..+++++.+|......-..++ 
T Consensus       123 iiekL~~-~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~-~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          123 ILEKLYS-SSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGA-AADHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHH-CCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHT-TSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHhc-CCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHH-hcChHHHHHHHHHHHHHHhccccccchhC
Confidence            3444443 356667778888888 6667 999999999999999999984 4688999999999999998777776666 


Q ss_pred             hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC--cHHHHHHhcc---CCC
Q 041050          264 SEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG--ALPWIVQNAN---NEA  338 (408)
Q Consensus       264 ~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g--~l~~Lv~lL~---~~~  338 (408)
                      ....++.|..++.+.+..|.+.|+..|.+++..+.... .++        .......-.+.|  -.+.|+.+|+   +.+
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~-~lv--------~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D  270 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNA-PLF--------IRAVNSVASTTGAPPWANLVSILEEKNGAD  270 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGH-HHH--------HHHHHHHHHHHCCCTTHHHHHHHTTTTSCC
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccc-hHH--------HHHHHHhhhccCCCcHHHHHHHHhccCCCC
Confidence            45688999999998899999999999999985221111 110        001111112223  3668889997   679


Q ss_pred             HHHHHHHHHHHHHHccC-c--hhHHHHH----hCCcHHHHHHHHhcC
Q 041050          339 APIRRHIELALCHLAQH-E--VNAREMI----SGGALWELVRISRDC  378 (408)
Q Consensus       339 ~~v~~~a~~aL~~La~~-~--~~~~~l~----~~g~i~~L~~ll~~~  378 (408)
                      .+++.+|...|..+-.. +  +....++    +.|.-..+.+.+...
T Consensus       271 ~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~  317 (339)
T 3dad_A          271 PELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTA  317 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhcc
Confidence            99999988766655443 2  2233443    566666777766654

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.56  E-value=0.00066  Score=67.61  Aligned_cols=142  Identities=11%  Similarity=0.131  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHHHHHHcCCchhHHHHHHhCCH--HHHHHHHcCCCCHHHHHHHHHHHHHhccCCh----h-hHHHHHhcCc
Q 041050          153 DANVRIHAVKVVANLAAEEANQEKIVEAGGL--SSLLMLLRSFEDETIRRVAAGAIANLAMNAE----A-NQELIMAQGG  225 (408)
Q Consensus       153 ~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i--~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~----~-~~~~i~~~g~  225 (408)
                      ...++.+++-+++-|+++++....+...+..  +.|+.+++.+.-+.+.+.++.++.|+....+    . ..+.++..++
T Consensus       241 ~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~  320 (480)
T 1ho8_A          241 GIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA  320 (480)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH
T ss_pred             cHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc
Confidence            3567899999999999998888888776533  6777778876778999999999999988632    1 1223322332


Q ss_pred             ----------------------------------------------------------------------------HHHH
Q 041050          226 ----------------------------------------------------------------------------ISLL  229 (408)
Q Consensus       226 ----------------------------------------------------------------------------i~~L  229 (408)
                                                                                                  +..|
T Consensus       321 l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L  400 (480)
T 1ho8_A          321 LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQL  400 (480)
T ss_dssp             HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHH
T ss_pred             hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHH
Confidence                                                                                        2334


Q ss_pred             HHHhhc---------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          230 STTAAD---------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       230 v~lL~~---------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      +.+|.+         +.||.+...||.=|+.++ ..|..+..+-+.|+=..++.++.++|++|+.+|..|+.-+.
T Consensus       401 ~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          401 IELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            445532         236777888888888888 78889988888999899999999999999999999998775

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.002  Score=59.26  Aligned_cols=150  Identities=8%  Similarity=0.024  Sum_probs=105.8

Q ss_pred             HHHHHHhh-cCCCHHHHHHHHHHHHHHcC--C-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          142 LHKILSLL-ESEDANVRIHAVKVVANLAA--E-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       142 v~~Ll~lL-~s~~~~v~~~A~~aL~nLa~--~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      +..|...+ +..+..++..|+.+|+.|+.  . +... .....  .+|.++..+. +..+.|+..+..++-+++...+..
T Consensus        62 ~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~-dkk~~V~~aa~~al~~i~~~~~~~  138 (249)
T 2qk1_A           62 LGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTK-EKKPSVIEAIRKALLTICKYYDPL  138 (249)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGG-CCCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHcccc
Confidence            56667778 68999999999999999985  3 3333 23322  4899999998 456889999888888877642110


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-Cchh-HH--HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKL-QM--KLRSEGGIRALLGMVRCGHPDVLSQVARGIAN  292 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~-~~--~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n  292 (408)
                      ...-.=...++.|+..| .+..+.++..++.+|..++. .+.. ..  .......++.|...+...++.|+..|..++..
T Consensus       139 ~~~~~l~~ll~~l~~~l-~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~  217 (249)
T 2qk1_A          139 ASSGRNEDMLKDILEHM-KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAI  217 (249)
T ss_dssp             CTTCTTHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            00000001456677777 55689999999999999982 2221 11  22224678899999999999999999999999


Q ss_pred             hhc
Q 041050          293 FAK  295 (408)
Q Consensus       293 L~~  295 (408)
                      ++.
T Consensus       218 i~~  220 (249)
T 2qk1_A          218 LIK  220 (249)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=97.38  E-value=0.0096  Score=53.64  Aligned_cols=146  Identities=12%  Similarity=0.127  Sum_probs=112.3

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccC
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMN  212 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~  212 (408)
                      +...=...+|.++.++++.|+.+-..|+++|..|-. .|-.-..+...  +..|..++. +.++-.+..|+..+.-+..-
T Consensus        69 ~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl--~~aL~dlik-~~~~il~~eaae~Lgklkv~  145 (265)
T 3b2a_A           69 RMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA--AKTLVSLLE-SPDDMMRIETIDVLSKLQPL  145 (265)
T ss_dssp             HHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH--HHHHHHHTT-SCCHHHHHHHHHHHHHCCBS
T ss_pred             cHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHHhc-CCCchHHHHHHHHhCcCCcc
Confidence            334444568999999999999999999999998876 45455555443  677888888 57888999999999988433


Q ss_pred             ChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHH
Q 041050          213 AEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARG  289 (408)
Q Consensus       213 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~a  289 (408)
                       ...+      +.+..+..++ .+.++.+...+.+++.|++   .|++.-..+     +.-+..+++++|+.+++.|..+
T Consensus       146 -~~~~------~V~~~l~sLl-~Skd~~vK~agl~~L~eia~~S~D~~i~~~I-----~~eI~elL~~eD~~l~e~aLd~  212 (265)
T 3b2a_A          146 -EDSK------LVRTYINELV-VSPDLYTKVAGFCLFLNMLNSSADSGHLTLI-----LDEIPSLLQNDNEFIVELALDV  212 (265)
T ss_dssp             -CCCH------HHHHHHHHHH-TCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT-----TTTHHHHHTCSCHHHHHHHHHH
T ss_pred             -cchH------HHHHHHHHHH-hCCChhHHHHHHHHHHHhhcccCCHHHHHHH-----HHHHHHHHcCCCHHHHHHHHHH
Confidence             1122      2356778888 8899999999999999998   344444434     3348889999999999999999


Q ss_pred             HHHhhc
Q 041050          290 IANFAK  295 (408)
Q Consensus       290 L~nL~~  295 (408)
                      +..+..
T Consensus       213 Le~ils  218 (265)
T 3b2a_A          213 LEKALS  218 (265)
T ss_dssp             HHHHTT
T ss_pred             HHHHHc
Confidence            999874

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.33  E-value=0.0087  Score=51.95  Aligned_cols=136  Identities=15%  Similarity=0.124  Sum_probs=106.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      ||.+..-+.-+++.++..-..+|..++. +|+.-..++     ..+..++. +.|..-+-.|+.++..+..+++..... 
T Consensus       109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~-----rdi~smlt-skd~~Dkl~aLnFi~alGen~~~yv~P-  181 (253)
T 2db0_A          109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV-----RDFMSMLS-SKNREDKLTALNFIEAMGENSFKYVNP-  181 (253)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH-----HHHHHHTS-CSSHHHHHHHHHHHHTCCTTTHHHHGG-
T ss_pred             HHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH-----HHHHHHhc-CCChHHHHHHHHHHHHHhccCccccCc-
Confidence            5556666667899999999999999987 787665554     45778887 467777888889998888875443333 


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                          -+|.|..+| .+.++-++..++.+|.|++ .|+..|..+.+      .+.-+...+..+++.+-.+|+-++.
T Consensus       182 ----fLprL~aLL-~D~deiVRaSaVEtL~~lA~~npklRkii~~------kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          182 ----FLPRIINLL-HDGDEIVRASAVEALVHLATLNDKLRKVVIK------RLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             ----GHHHHHGGG-GCSSHHHHHHHHHHHHHHHTSCHHHHHHHHH------HHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             ----chHHHHHHH-cCcchhhhHHHHHHHHHHHHcCHHHHHHHHH------HHHHhcCcHHHHHHHHHHHHHHHHH
Confidence                378999998 6688899999999999999 88888887765      5666677888899888888888764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.46  E-value=0.22  Score=54.22  Aligned_cols=243  Identities=14%  Similarity=0.136  Sum_probs=153.6

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC-h
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA-E  214 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~-~  214 (408)
                      +.++.+...+......  +.|+.++..|+.    .+..-..++  +.+|.++..+. +....|+..|..++..+...- +
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~-dk~~~v~~aa~~~~~~~~~~~~~  128 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAG-NKDKEIQSVASETLISIVNAVNP  128 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSCG
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhCCH
Confidence            3456666666643333  889999999984    123323333  46899999888 467889998887777665432 3


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      ....     ..+|.|+..|..+..=.....++.++..|+.....+....=...+|.+...+..-.++|.+.|..++..+|
T Consensus       129 ~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~  203 (986)
T 2iw3_A          129 VAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKAT  203 (986)
T ss_dssp             GGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHH
Confidence            3332     24788998886655667888999999999843322222223457888888888888999999999999998


Q ss_pred             cc-chhhhhHHH----hhhhhccCChhhHHHHHhc--------C----cHHHHHHhccCCCHHHHHHHHHHHHHHccCch
Q 041050          295 KC-ESRAATQVR----FIRCTATGVKSGRSLLIED--------G----ALPWIVQNANNEAAPIRRHIELALCHLAQHEV  357 (408)
Q Consensus       295 ~~-~~~~~~~~~----~~i~~~~~~~~~~~~i~~~--------g----~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~  357 (408)
                      .+ ++.....+.    .++.+.-..+++...+...        -    .+|.|..-|+.....+++.++.++-|||.=-+
T Consensus       204 ~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~  283 (986)
T 2iw3_A          204 ETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE  283 (986)
T ss_dssp             GGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred             hcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence            74 222222222    2222211122222222211        1    23444555555688899999999999997422


Q ss_pred             hHHH--HHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          358 NARE--MISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       358 ~~~~--l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      +-..  -.--..+|.|.+....-+..+.|..|.+++.
T Consensus       284 ~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~  320 (986)
T 2iw3_A          284 DPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALK  320 (986)
T ss_dssp             CHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHH
T ss_pred             CHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHH
Confidence            2222  2245578888888877777777777765553

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.31  E-value=0.14  Score=48.22  Aligned_cols=181  Identities=10%  Similarity=0.063  Sum_probs=109.8

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHH----HHHcCCCCHHHHHHHHHHHHHhccCChhhHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLL----MLLRSFEDETIRRVAAGAIANLAMNAEANQE  218 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~----~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~  218 (408)
                      ..+..++ +=..+.+.-++.+++-++.++.....+.+...-..++    ..+.+..++..+-.++.+++|+..+ +..+.
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~  183 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQK  183 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHH
Confidence            4444444 3333455556666666555666555555443333333    3333334567788899999999999 88888


Q ss_pred             HHHhcC--cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC----chhHHHHHhcccHHHHHHhhc-CCCHHHHHHHHHHHH
Q 041050          219 LIMAQG--GISLLSTTAADAEDPQTLRMVAGAIANLCGN----DKLQMKLRSEGGIRALLGMVR-CGHPDVLSQVARGIA  291 (408)
Q Consensus       219 ~i~~~g--~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~----~~~~~~i~~~g~l~~L~~lL~-~~~~~v~~~a~~aL~  291 (408)
                      .+....  .++.+...+ .+.+..++..++.++.|++..    ... +.  ....+..+..++. ..|++....++-||+
T Consensus       184 ~l~~~~~~il~~~~~~~-~~~nknl~iA~ATl~~NlAv~~~~~~~~-~~--~~~ll~~l~~il~~~~d~EalyR~LvALG  259 (304)
T 3ebb_A          184 LMMSQRESLMSHAIELK-SGSNKNIHIALATLALNYSVCFHKDHNI-EG--KAQCLSLISTILEVVQDLEATFRLLVALG  259 (304)
T ss_dssp             HHHHTHHHHHHHHHGGG-SSCCHHHHHHHHHHHHHHHHHHHHSCCH-HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHhhcCCc-hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            877531  222333332 456789999999999999821    111 11  1114455555663 568899999999999


Q ss_pred             HhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHH
Q 041050          292 NFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIE  346 (408)
Q Consensus       292 nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~  346 (408)
                      +|..                 ++.+.++.....|+...+-..... .++.|...+-
T Consensus       260 tL~~-----------------~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~  298 (304)
T 3ebb_A          260 TLIS-----------------DDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCR  298 (304)
T ss_dssp             HHHT-----------------TCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHH
T ss_pred             HHHh-----------------CChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHH
Confidence            9996                 455555555555666665555554 3555555443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.17  E-value=0.14  Score=48.20  Aligned_cols=189  Identities=14%  Similarity=0.073  Sum_probs=117.9

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH----HHhhcCCCHHHHHHHHHHHHHHhCCchh
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS----TTAADAEDPQTLRMVAGAIANLCGNDKL  258 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv----~lL~~~~~~~v~~~a~~aL~nL~~~~~~  258 (408)
                      +..+..++.  =+.+.+--++..++-+..+ +.....+.+.+.-..++    ..+.....|.-+..++++++|+..++..
T Consensus       105 l~~l~kil~--WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g  181 (304)
T 3ebb_A          105 LQILWKAIN--CPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG  181 (304)
T ss_dssp             HHHHHHHHT--SCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred             HHHHHHHHc--CCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence            455555553  2334555566777777776 76666665543333333    3333334567788999999999999999


Q ss_pred             HHHHHhc--ccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC
Q 041050          259 QMKLRSE--GGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN  336 (408)
Q Consensus       259 ~~~i~~~--g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~  336 (408)
                      ++.+...  ..++.+...+.+++..++..++..+.|++..-.+.            .+.+....     ++..+...+..
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~------------~~~~~~~~-----ll~~l~~il~~  244 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKD------------HNIEGKAQ-----CLSLISTILEV  244 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHS------------CCHHHHHH-----HHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhc------------CCchHHHH-----HHHHHHHHHhc
Confidence            8887753  34555555556678899999999999998511100            11111111     33344444433


Q ss_pred             -CCHHHHHHHHHHHHHHccCchhHHHHH-hCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          337 -EAAPIRRHIELALCHLAQHEVNAREMI-SGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       337 -~~~~v~~~a~~aL~~La~~~~~~~~l~-~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                       .+.+....+..||++|...+....+++ ..|+...+-++...+.+..+..+|.-++
T Consensus       245 ~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~  301 (304)
T 3ebb_A          245 VQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFIL  301 (304)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHH
Confidence             488999999999999998766666666 4555555666665544444656555444

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.40  E-value=1.9  Score=46.89  Aligned_cols=190  Identities=14%  Similarity=0.064  Sum_probs=124.6

Q ss_pred             cCHHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          140 VGLHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       140 ~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      +-+|.++..+.+....+|..|..++..+..  ++...     ...+|.|+..|.+...=+.+..|+.++..|+...+. +
T Consensus        95 ~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~-~  168 (986)
T 2iw3_A           95 QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD-Q  168 (986)
T ss_dssp             TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH-H
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH-H
Confidence            347888888888889999999988888766  44333     224899999997655567888899999999876332 2


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCchhH-----------------HHHHhccc----------
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDKLQ-----------------MKLRSEGG----------  267 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~~~-----------------~~i~~~g~----------  267 (408)
                      -...=-..||.+...+ .+..+++...+..++..+|   .|.+..                 .-+...+.          
T Consensus       169 ~~~~~~~~~p~~~~~~-~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~  247 (986)
T 2iw3_A          169 VALRMPELIPVLSETM-WDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPA  247 (986)
T ss_dssp             HHHHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHH
T ss_pred             HHHhccchhcchHhhc-ccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecch
Confidence            2222224577777776 5677899999999998888   443221                 01111110          


Q ss_pred             -----HHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHH
Q 041050          268 -----IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPI  341 (408)
Q Consensus       268 -----l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v  341 (408)
                           +|.|.+-|+.....+++.++-.+-|||+               +..++.-...|+- ..+|-|...... .+|++
T Consensus       248 ~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~---------------lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          248 TLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK---------------LVEDPQVIAPFLG-KLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT---------------TCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred             hHHHHHHHHHhhhccCcchhheeeEEEEcchhh---------------hcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence                 1222233344566667777777777765               4455554444443 567777666644 58999


Q ss_pred             HHHHHHHHHHH
Q 041050          342 RRHIELALCHL  352 (408)
Q Consensus       342 ~~~a~~aL~~L  352 (408)
                      |..|..|+..|
T Consensus       312 r~~~~~a~~~l  322 (986)
T 2iw3_A          312 REVTLRALKTL  322 (986)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998888887

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.23  E-value=0.57  Score=42.96  Aligned_cols=188  Identities=12%  Similarity=0.115  Sum_probs=113.6

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHcCC-ch--hHHHHH-HhCC-HHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh---hh
Q 041050          145 ILSLLESEDANVRIHAVKVVANLAAE-EA--NQEKIV-EAGG-LSSLLMLLRSFEDETIRRVAAGAIANLAMNAE---AN  216 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~--~~~~i~-~~g~-i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~---~~  216 (408)
                      +-+-|.|.+=..|..|+..|..+... +.  .....+ ..+. .+.+-..+. +.+..++..++.+|..++....   ..
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            44566778888888888888766442 11  111111 1222 344555665 5788999999999887765311   11


Q ss_pred             H--HHHHhcCcHHHHHHH-hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          217 Q--ELIMAQGGISLLSTT-AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       217 ~--~~i~~~g~i~~Lv~l-L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      +  ....-...++.|+.- + .+..+.++..+..++..++........     .+..+...+.+.+|.++..++..|..+
T Consensus        93 ~~~~~~~~~~~l~~lveK~l-~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~  166 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGL-TSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYEL  166 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-SCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHh-cCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            1  112223346666653 4 456778888888888777622221111     234466777899999999988888776


Q ss_pred             hccchhhhhHHHhhhhhccCChhh-HHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          294 AKCESRAATQVRFIRCTATGVKSG-RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~-~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      ..              .| |.... ....+ ..+++.+..++.+.+++||..|..++..+-..
T Consensus       167 l~--------------~f-g~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          167 MA--------------AF-GLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HH--------------HH-TTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HH--------------Hh-CCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            53              00 11111 01111 13556777888999999999999999887654

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=95.15  E-value=2.1  Score=40.54  Aligned_cols=223  Identities=10%  Similarity=0.076  Sum_probs=157.7

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-Cch----hHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEA----NQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIAN  208 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~----~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~n  208 (408)
                      .++...+-+..|+..|..-+-+.|..++.+..++.. ...    .-..+..  --..|..++...+++++.-.+-..|..
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe  149 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence            456777778899999999999999999999998876 322    2233332  222233333322455666667778888


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc---cHHHHHHhhcCCCHHHHH
Q 041050          209 LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG---GIRALLGMVRCGHPDVLS  284 (408)
Q Consensus       209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~v~~  284 (408)
                      ...+ +.....+.+.+.+-.+...+ ..+.-++..-|..++.-|- .++.........+   .+...-.++.+++--+++
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR  227 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  227 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHh-cCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence            8888 99999999988888888887 5677888888888888775 6555555555433   355667788999999999


Q ss_pred             HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchh--
Q 041050          285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVN--  358 (408)
Q Consensus       285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~--  358 (408)
                      ++...|+.|-.                  ++.+...|.    +..-+..++.+|++....++.+|..+.--++.++..  
T Consensus       228 QSlKLLgelLl------------------dr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~  289 (341)
T 1upk_A          228 QSLKLLGELLL------------------DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  289 (341)
T ss_dssp             HHHHHHHHHHH------------------SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHh------------------CchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence            99999999985                  233333333    223467788899999999999999999998887433  


Q ss_pred             -HHHHH---hCCcHHHHHHHHhcC
Q 041050          359 -AREMI---SGGALWELVRISRDC  378 (408)
Q Consensus       359 -~~~l~---~~g~i~~L~~ll~~~  378 (408)
                       ...+.   +...+..|-.+..+.
T Consensus       290 ~I~~IL~~Nr~kLl~fl~~f~~d~  313 (341)
T 1upk_A          290 PILDILLKNQAKLIEFLSKFQNDR  313 (341)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCC
Confidence             23332   455555666665544

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.84  E-value=0.51  Score=42.97  Aligned_cols=168  Identities=12%  Similarity=0.120  Sum_probs=118.8

Q ss_pred             chhhhhhcCCCCchHHHHHHhcCHHHHHHhhcC-----CCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHc
Q 041050          119 HSQFRDSGNGQKAPITKLFEQVGLHKILSLLES-----EDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLR  191 (408)
Q Consensus       119 ~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s-----~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~  191 (408)
                      .+.+++.+.++.+....+++....--|..+|+.     +.+.+|-.++.+++.|..  +++....+.+.+.+|..+..++
T Consensus        76 aLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime  155 (268)
T 2fv2_A           76 ALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIME  155 (268)
T ss_dssp             HHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHh
Confidence            356777777666666666666643344466653     336799999999999986  5677777788888999999998


Q ss_pred             CCCCHHHHHHHHHHHHHhccCChhhHHHHHhc--------CcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050          192 SFEDETIRRVAAGAIANLAMNAEANQELIMAQ--------GGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR  263 (408)
Q Consensus       192 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~--------g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~  263 (408)
                      . .+.--+..|..++..+-.+ +..-.-+..+        ..+..++.-+.+.+++.+.+++.++-..|+.|+..+..+.
T Consensus       156 ~-GselSKtvAtfIlqKIL~d-d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~  233 (268)
T 2fv2_A          156 S-GSELSKTVATFILQKILLD-DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR  233 (268)
T ss_dssp             H-SCHHHHHHHHHHHHHHHHS-HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             h-ccHHHHHHHHHHHHHHhcc-chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            5 4667788888888888887 6655444322        1233344445577899999999999999999999999887


Q ss_pred             hcccHHHHHHhhc--------CCCHHHHHHHHHHHHHh
Q 041050          264 SEGGIRALLGMVR--------CGHPDVLSQVARGIANF  293 (408)
Q Consensus       264 ~~g~l~~L~~lL~--------~~~~~v~~~a~~aL~nL  293 (408)
                      +.     |...++        .+|+.+++.-...+.|+
T Consensus       234 ~~-----LP~~Lrd~tf~~~l~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          234 QC-----LPDQLKDTTFAQVLKDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HH-----SCGGGTSSTTHHHHTSCHHHHHHHHHHHHHS
T ss_pred             Hh-----CcHHhhChHHHHHHhcCHHHHHHHHHHHHhc
Confidence            52     222222        35677776665666554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.76  E-value=0.99  Score=42.75  Aligned_cols=193  Identities=17%  Similarity=0.087  Sum_probs=137.2

Q ss_pred             HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh----HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN----QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA  250 (408)
Q Consensus       175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~----~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~  250 (408)
                      ..+...+.+..|+..|.. =+-+.|+.++.+..++.......    .+-+..  -...|..++...+++++--.+-..|.
T Consensus        72 ~ei~~~dll~~Li~~l~~-L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhccc-CCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHH
Confidence            355667778888888873 57889999999988887763322    122222  13344444444455566655555555


Q ss_pred             HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC---cH
Q 041050          251 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG---AL  327 (408)
Q Consensus       251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g---~l  327 (408)
                      -....+.....+...+.+-.+......++.+|-..|..++..|-.                 .++.....+...+   ..
T Consensus       149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt-----------------~Hk~lvaefL~~nyd~Ff  211 (341)
T 1upk_A          149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT-----------------RHKLLSAEFLEQHYDRFF  211 (341)
T ss_dssp             HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH-----------------SSHHHHHHHHHHTHHHHH
T ss_pred             HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHh-----------------ccHHHHHHHHHHhHHHHH
Confidence            555888888888888888889999999999999999988888764                 5555555665433   46


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          328 PWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       328 ~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                      ...-.++.+++.-+++.+...|+.+-.+..|...|.    +..-+..++.++++.+. .++-.|-
T Consensus       212 ~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk-~Iq~EAF  275 (341)
T 1upk_A          212 SEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSR-NIQFEAF  275 (341)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCH-HHHHHHH
T ss_pred             HHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchh-chhhhhh
Confidence            677789999999999999999999999988776665    34456777888886543 3333333

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.68  E-value=1.7  Score=39.56  Aligned_cols=136  Identities=12%  Similarity=0.100  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCC----CCHHHHHHHHHHHHHhccC-ChhhHHHHHhcCcHHHHHHH
Q 041050          158 IHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSF----EDETIRRVAAGAIANLAMN-AEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       158 ~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~----~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~g~i~~Lv~l  232 (408)
                      .+|...|.-+|.+++.|..+++....--|.-.|...    +-+-+|-.++++++.|... +++....+.+++.+|..+..
T Consensus        74 cnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri  153 (268)
T 2fv2_A           74 CNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI  153 (268)
T ss_dssp             HHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence            334445556778999999999986544444445432    1256788899999998753 37777788899999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhc--------ccHHHHH-HhhcCCCHHHHHHHHHHHHHhh
Q 041050          233 AADAEDPQTLRMVAGAIANLCGNDKLQMKLRSE--------GGIRALL-GMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~--------g~l~~L~-~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      +. ..++-.+..|..++..+-.++.+-..++..        ..+..++ .+...+++.+.+++.++-.-|+
T Consensus       154 me-~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLs  223 (268)
T 2fv2_A          154 ME-SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLS  223 (268)
T ss_dssp             HH-HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred             Hh-hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence            84 455667777888888888777776666541        1222233 3446889999999999999998

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.16  E-value=0.39  Score=45.75  Aligned_cols=127  Identities=16%  Similarity=0.199  Sum_probs=97.0

Q ss_pred             hhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHH
Q 041050          124 DSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAA  203 (408)
Q Consensus       124 ~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~  203 (408)
                      .-+-.....+.-++..+|+..+...++.++.++-+..+..|...+........-. ..-+|-++..+.-+++.++.....
T Consensus       268 ~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYSGT  346 (619)
T 3c2g_A          268 GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYSGT  346 (619)
T ss_dssp             HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEecc
Confidence            3344566667889999999999999999999999999999998876443321111 224788888888778889999999


Q ss_pred             HHHHHhccCChhhHHHHHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHH
Q 041050          204 GAIANLAMNAEANQELIMAQGGISLLSTTAADA------EDPQTLRMVAGAIAN  251 (408)
Q Consensus       204 ~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~n  251 (408)
                      +.|.|...++...++.-+..|+|+.|-..+.+.      .+..-+..+|+.++|
T Consensus       347 GFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN  400 (619)
T 3c2g_A          347 GFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICN  400 (619)
T ss_dssp             HHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHH
Confidence            999999999788888888999999988776533      344445556655555

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=93.68  E-value=2  Score=41.64  Aligned_cols=156  Identities=13%  Similarity=0.106  Sum_probs=102.0

Q ss_pred             CCchHHHHHHhcCHHHHHHhhc-----------CCCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCH
Q 041050          129 QKAPITKLFEQVGLHKILSLLE-----------SEDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDE  196 (408)
Q Consensus       129 ~~~~~~~l~~~~~v~~Ll~lL~-----------s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~  196 (408)
                      ....+..++ .+|+..|+..|.           ..+...+...+++|..+..+......++... ++..|...|. +..+
T Consensus        99 ~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~-s~~~  176 (383)
T 3eg5_B           99 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVP  176 (383)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC-TTSH
T ss_pred             ccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC-CCch
Confidence            345556665 678888887774           2245788889999999988887888787755 4888888887 4688


Q ss_pred             HHHHHHHHHHHHhccCCh-hh-HHHH----------HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---hh---
Q 041050          197 TIRRVAAGAIANLAMNAE-AN-QELI----------MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---KL---  258 (408)
Q Consensus       197 ~v~~~A~~aL~nLa~~~~-~~-~~~i----------~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~~---  258 (408)
                      .++..|+..|+.+|..+. .+ ...+          .+..-...++..|....+.+....+...|-.+...+   ..   
T Consensus       177 ~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~  256 (383)
T 3eg5_B          177 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVH  256 (383)
T ss_dssp             HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            999999999999998732 23 3322          223345677888765566667655555555555332   22   


Q ss_pred             -HHHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          259 -QMKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       259 -~~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                       |..+...|..+.+-.+=..+++++..+.
T Consensus       257 lR~ef~~~Gl~~il~~lr~~~~~~L~~Qi  285 (383)
T 3eg5_B          257 IRSELMRLGLHQVLQELREIENEDMKVQL  285 (383)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSCCHHHHHHH
T ss_pred             HHHHHHHCChHHHHHHHhcCCChhHHHHH
Confidence             3444556666655543345666665543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=93.59  E-value=1.4  Score=43.74  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHH
Q 041050          184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLR  263 (408)
Q Consensus       184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~  263 (408)
                      ..++..-+  .++..++.|+..|.....+.|..++.-     +..++.+. +++|+.|+..|...|..+|.+ ++...+ 
T Consensus        32 ~~Il~~~k--g~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLc-EDed~~IR~qaik~Lp~~ck~-~~i~ki-  101 (507)
T 3u0r_A           32 QVILDGVK--GGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLC-EDEDVSIRRQAIKELPQFATG-ENLPRV-  101 (507)
T ss_dssp             HHHHHGGG--SCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHH-TCSSHHHHHHHHHHGGGGCCT-TCHHHH-
T ss_pred             HHHHHhcC--CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHH-hcccHHHHHHHHHhhHHHhhh-hhhhhH-
Confidence            34444444  368899999999999988888888764     67788996 778999999999999999977 554444 


Q ss_pred             hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          264 SEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       264 ~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                          ...|+++|..+++.-...+-.+|..|-.
T Consensus       102 ----aDvL~QlLqtdd~~E~~~V~~sL~sllk  129 (507)
T 3u0r_A          102 ----ADILTQLLQTDDSAEFNLVNNALLSIFK  129 (507)
T ss_dssp             ----HHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHhccchHHHHHHHHHHHHHHh
Confidence                4568999999999888888888888875

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.46  E-value=1.5  Score=39.33  Aligned_cols=154  Identities=13%  Similarity=0.131  Sum_probs=97.9

Q ss_pred             chHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHH
Q 041050          131 APITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETI  198 (408)
Q Consensus       131 ~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v  198 (408)
                      ..++.+ ..+|+..|+..|..           .+.+.+..++.+|..+..+......++... ++..|...|. ++++.+
T Consensus        35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~-s~~~~~  112 (233)
T 2f31_A           35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM  112 (233)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC-TTSHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC-CCCchH
Confidence            334444 46777777766641           135677889999999988887777787754 5888888887 578899


Q ss_pred             HHHHHHHHHHhccCCh-hh-HHHHH----------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---hh----H
Q 041050          199 RRVAAGAIANLAMNAE-AN-QELIM----------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---KL----Q  259 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~-~~-~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~~----~  259 (408)
                      +..++..|+.+|..++ .+ ...+.          +..-...++..+.+..+.+....+...|-.+..++   ..    |
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR  192 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  192 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999998988733 24 33332          22234467777755566666655555555555333   22    3


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                      ..+...|..+.+-.+=..+++++..+.
T Consensus       193 ~ef~~~Gl~~il~~l~~~~~~~L~~Qi  219 (233)
T 2f31_A          193 SELMRLGLHQVLQELREIENEDMKVQL  219 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHCChHHHHHHHhccCCHHHHHHH
Confidence            444555555544444345667665544

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.41  E-value=0.063  Score=48.97  Aligned_cols=42  Identities=24%  Similarity=0.229  Sum_probs=23.2

Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHH
Q 041050          145 ILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAG  204 (408)
Q Consensus       145 Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~  204 (408)
                      +..+++++++.||..++..|                 ..+.|..++. +++..||..++.
T Consensus        79 l~~L~~D~~~~VR~~aA~~L-----------------~~~~L~~ll~-D~d~~VR~~aA~  120 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL-----------------PREQLSALMF-DEDREVRITVAD  120 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-----------------CSGGGGGTTT-CSCHHHHHHHHH
T ss_pred             HHHHccCcCHHHHHHHHHHC-----------------CHHHHHHHHc-CCCHHHHHHHHH
Confidence            33455556666666655432                 1234555555 467777776665

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.33  E-value=4.1  Score=44.17  Aligned_cols=183  Identities=13%  Similarity=0.128  Sum_probs=96.1

Q ss_pred             HhhcCC---CHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-------h-
Q 041050          147 SLLESE---DANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-------A-  215 (408)
Q Consensus       147 ~lL~s~---~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-------~-  215 (408)
                      ..|.++   ++-+|..|+++|+.++..- ..+ .. ...++.++..|. ++++.|+..|+++|.+++...+       . 
T Consensus       462 p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~-~l-~~~l~~l~~~L~-d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~  537 (960)
T 1wa5_C          462 PDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA-QL-IELMPILATFLQ-TDEYVVYTYAAITIEKILTIRESNTSPAFIF  537 (960)
T ss_dssp             HHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH-HH-HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred             HHhcCCCCCCceehHHHHHHHHHHHhhC-CHH-HH-HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHhcccccccccccc
Confidence            444555   8999999999999988731 112 22 224778888887 4578999999999999887411       1 


Q ss_pred             hHHHHHh--cCcHHHHHHHhhcCC-C-HH--HHHHHHHHHHHHh--CCchhHHHHHhcccHHHHHHhh----c-CCCHHH
Q 041050          216 NQELIMA--QGGISLLSTTAADAE-D-PQ--TLRMVAGAIANLC--GNDKLQMKLRSEGGIRALLGMV----R-CGHPDV  282 (408)
Q Consensus       216 ~~~~i~~--~g~i~~Lv~lL~~~~-~-~~--v~~~a~~aL~nL~--~~~~~~~~i~~~g~l~~L~~lL----~-~~~~~v  282 (408)
                      .+..+..  ...++.|+.++.... . +.  ....+..+|..++  ..+.....+.  ..++.|...+    + .+++..
T Consensus       538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~  615 (960)
T 1wa5_C          538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRF  615 (960)
T ss_dssp             CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHH
T ss_pred             cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHH
Confidence            1222210  113345556664431 0 11  1223444444443  1111111110  1223333333    2 346667


Q ss_pred             HHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHH
Q 041050          283 LSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHL  352 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~L  352 (408)
                      ...+..+|+.++..                ..++.... ....++|.+...+.+...+....+..++..+
T Consensus       616 ~~~~~e~l~~l~~~----------------~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          616 THYTFESIGAILNY----------------TQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             HHHHHHHHHHHHHT----------------SCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc----------------CCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence            76777888887751                11222112 2335666766766655445555555554444

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=93.24  E-value=1.4  Score=39.69  Aligned_cols=129  Identities=13%  Similarity=0.108  Sum_probs=87.2

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhcc-CChhhHHHHHhcCc
Q 041050          147 SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAM-NAEANQELIMAQGG  225 (408)
Q Consensus       147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~-~~~~~~~~i~~~g~  225 (408)
                      .+..++..++|..|+.+|+.+ . + .      ...++.+...+..++.=.|+..++.++..++. ..++.        .
T Consensus        78 ~L~~~~~deVR~~Av~lLg~~-~-~-~------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~--------~  140 (240)
T 3l9t_A           78 LAYQSDVYQVRMYAVFLFGYL-S-K-D------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK--------A  140 (240)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHT-T-T-S------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------T
T ss_pred             HHHhCcchHHHHHHHHHHHhc-c-C-c------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------H
Confidence            556688899999999998877 2 1 1      11356666645556677899999999998875 21431        4


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          226 ISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       226 i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ++.+.... .++++-+++.|+..+..-|.-+..+.  .-.-.++.|-.+..+++.-|++.++++|..+++
T Consensus       141 l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          141 LPIIDEWL-KSSNLHTRRAATEGLRIWTNRPYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             HHHHHHHH-HCSSHHHHHHHHHHTCSGGGSTTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHh-cCCCHHHHHHHHHhhHHHhccchhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence            55555654 77899999999888754342111100  001134545556667888899999999999998

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=93.21  E-value=1.2  Score=40.63  Aligned_cols=144  Identities=13%  Similarity=0.105  Sum_probs=90.7

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcC--Cch--hH--HHHHHhCCHHHHHHH-HcCCCCHHHHHHHHHHHHHhccCChh
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAA--EEA--NQ--EKIVEAGGLSSLLML-LRSFEDETIRRVAAGAIANLAMNAEA  215 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~--~~--~~i~~~g~i~~L~~l-L~~~~~~~v~~~A~~aL~nLa~~~~~  215 (408)
                      +.+-..+.+.|..++..++.+|..++.  ...  .+  ....-...+|.|+.- +. +..+.++..|..++..++.. ..
T Consensus        58 ~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~-~~  135 (278)
T 4ffb_C           58 TLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGL-DT  135 (278)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHT-SS
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHh-cC
Confidence            334467788999999999999988764  111  11  112223347777764 55 35678888888887766543 21


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh---CCch-hHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC---GNDK-LQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~---~~~~-~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                      ....+     ++.++..+ .+..|.++..++..|.++.   +... .....+ ..+++.+..++.+.|+.||..|..++.
T Consensus       136 ~~~~~-----~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~  208 (278)
T 4ffb_C          136 SITQS-----VELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIV  208 (278)
T ss_dssp             SSHHH-----HHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHH
T ss_pred             cHHHH-----HHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            11111     23444454 5678999998888888775   2111 111111 134556777889999999999999998


Q ss_pred             Hhhc
Q 041050          292 NFAK  295 (408)
Q Consensus       292 nL~~  295 (408)
                      .+..
T Consensus       209 ~ly~  212 (278)
T 4ffb_C          209 EIYK  212 (278)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8875

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=92.75  E-value=0.69  Score=50.91  Aligned_cols=100  Identities=11%  Similarity=-0.033  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC--CH--HHHHHHHHHHHHHhCC-chhHHHHHhcccH
Q 041050          194 EDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAE--DP--QTLRMVAGAIANLCGN-DKLQMKLRSEGGI  268 (408)
Q Consensus       194 ~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~--~~--~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l  268 (408)
                      .+=..++.++++++.++..-......-.=...++.|+.++....  ++  .++..++++++..+.- ..+...+  ...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            46788999999999998763222222222235677888764312  22  3444667888776621 1111111  1344


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          269 RALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       269 ~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ..|+..+..+++.++..||+++.+|+.
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            456666666789999999999999985

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.35  E-value=3.3  Score=39.47  Aligned_cols=128  Identities=13%  Similarity=0.168  Sum_probs=91.9

Q ss_pred             HHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh-cCCCHHHHH
Q 041050          206 IANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV-RCGHPDVLS  284 (408)
Q Consensus       206 L~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL-~~~~~~v~~  284 (408)
                      |.||-++.....+-++..+|+..+.... ..+..++.+.-+..|...+........= =...++.++..+ .+++.++..
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhccCCCcceEE
Confidence            4455555488889999999999998887 6677788888888887776443332111 134578888877 488899999


Q ss_pred             HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhcc-C------CCHHHHHHHHHHHHHH
Q 041050          285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNAN-N------EAAPIRRHIELALCHL  352 (408)
Q Consensus       285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~-~------~~~~v~~~a~~aL~~L  352 (408)
                      ...+.|+|...                 .....++..+..|+++.|...+. .      .+..-+..||.+++|.
T Consensus       344 SGTGFLSNVVA-----------------HKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          344 SGTGFLSNVVA-----------------HKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             HHHHHHHHHST-----------------TCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHh-----------------cccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            99999999986                 44555666678899998877553 2      1455566677777664

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.18  E-value=7.6  Score=42.03  Aligned_cols=199  Identities=11%  Similarity=0.029  Sum_probs=106.4

Q ss_pred             CCCHHHHHHHHHHHHHHcCC---ch----------hHHHHHHhCCHHHHHHHHcCC--CCHHHHHHHHHHHHHhccCChh
Q 041050          151 SEDANVRIHAVKVVANLAAE---EA----------NQEKIVEAGGLSSLLMLLRSF--EDETIRRVAAGAIANLAMNAEA  215 (408)
Q Consensus       151 s~~~~v~~~A~~aL~nLa~~---~~----------~~~~i~~~g~i~~L~~lL~~~--~~~~v~~~A~~aL~nLa~~~~~  215 (408)
                      +++-..++.|+.+++.++..   ..          .-..++.    ..++..|.+.  ..+-+|..|+|+|+.++..-  
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--  489 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--  489 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--
Confidence            45557889999999999752   11          1111111    1223334432  27889999999999998762  


Q ss_pred             hHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc--------h-hHHHHHh--cccHHHHHHhhcCCC---HH
Q 041050          216 NQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND--------K-LQMKLRS--EGGIRALLGMVRCGH---PD  281 (408)
Q Consensus       216 ~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~--------~-~~~~i~~--~g~l~~L~~lL~~~~---~~  281 (408)
                      ..+.  -...++.++..| .++++.|+..|+++|.+++...        . .+..+..  ...++.|+.++....   +.
T Consensus       490 ~~~~--l~~~l~~l~~~L-~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~  566 (960)
T 1wa5_C          490 TKAQ--LIELMPILATFL-QTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEK  566 (960)
T ss_dssp             CHHH--HHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHH
T ss_pred             CHHH--HHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCc
Confidence            1221  122467777777 4567999999999999998531        1 1222211  234455666665431   11


Q ss_pred             --HHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHh----ccC-CCHHHHHHHHHHHHHHcc
Q 041050          282 --VLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQN----ANN-EAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       282 --v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~l----L~~-~~~~v~~~a~~aL~~La~  354 (408)
                        ....+..+|..++..-.+..             ..+-..     +++.|+..    .++ +++..+..+..+|+.++.
T Consensus       567 ~~~~e~l~~al~~vv~~~~~~~-------------~p~~~~-----l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~  628 (960)
T 1wa5_C          567 LAENEFLMRSIFRVLQTSEDSI-------------QPLFPQ-----LLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN  628 (960)
T ss_dssp             HTSCHHHHHHHHHHHHHHTTTT-------------GGGHHH-----HHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHhh-------------hhHHHH-----HHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence              22345566665543111110             001111     22333332    233 366677677888888776


Q ss_pred             C--chhHHHHHhCCcHHHHHHHHhc
Q 041050          355 H--EVNAREMISGGALWELVRISRD  377 (408)
Q Consensus       355 ~--~~~~~~l~~~g~i~~L~~ll~~  377 (408)
                      .  ++.... .....++.+..++..
T Consensus       629 ~~~~~~~~~-~~~~~~p~~~~iL~~  652 (960)
T 1wa5_C          629 YTQRQNLPL-LVDSMMPTFLTVFSE  652 (960)
T ss_dssp             TSCGGGHHH-HHHHHHHHHHHHHHT
T ss_pred             cCCcchHHH-HHHHHHHHHHHHHHh
Confidence            4  222222 234456777777664

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=91.92  E-value=3  Score=37.45  Aligned_cols=142  Identities=11%  Similarity=0.121  Sum_probs=96.2

Q ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHH
Q 041050          184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMK  261 (408)
Q Consensus       184 ~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~  261 (408)
                      -.+...|-.++..++|..|+.+|..+ .. .        ...++.+...+...+.=.|+..++.++..+|.  +++.   
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~-~~-~--------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~---  139 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL-SK-D--------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK---  139 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT-TT-S--------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT---
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc-cC-c--------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH---
Confidence            34455555456678999999988877 22 1        11345554534566777899999999999873  3331   


Q ss_pred             HHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHH
Q 041050          262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPI  341 (408)
Q Consensus       262 i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v  341 (408)
                           .++.+...+.++++.|++.|...+.-.+.  ...          +-.+++        -++|.|-.+..+++.-|
T Consensus       140 -----~l~~~~~W~~d~n~~VRR~Ase~~rpW~~--~~~----------~k~dp~--------~ll~iL~~L~~D~s~yV  194 (240)
T 3l9t_A          140 -----ALPIIDEWLKSSNLHTRRAATEGLRIWTN--RPY----------FKENPN--------EAIRRIADLKEDVSEYV  194 (240)
T ss_dssp             -----THHHHHHHHHCSSHHHHHHHHHHTCSGGG--STT----------TTTCHH--------HHHHHHHTTTTCSCHHH
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHhhHHHhc--cch----------hhcCHH--------HHHHHHHHhcCChHHHH
Confidence                 56678888899999999999877765442  000          001111        25667777777788999


Q ss_pred             HHHHHHHHHHHccC-chhHHHHH
Q 041050          342 RRHIELALCHLAQH-EVNAREMI  363 (408)
Q Consensus       342 ~~~a~~aL~~La~~-~~~~~~l~  363 (408)
                      |+.+.++|..++.. ++-...++
T Consensus       195 rKSVan~LrD~SK~~Pd~V~~~~  217 (240)
T 3l9t_A          195 RKSVGNALRDISKKFPDLVKIEL  217 (240)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhCHHHHHHHH
Confidence            99999999999997 45555555

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.70  E-value=3.4  Score=40.07  Aligned_cols=154  Identities=13%  Similarity=0.133  Sum_probs=98.9

Q ss_pred             chHHHHHHhcCHHHHHHhhcC-----------CCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHH
Q 041050          131 APITKLFEQVGLHKILSLLES-----------EDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETI  198 (408)
Q Consensus       131 ~~~~~l~~~~~v~~Ll~lL~s-----------~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v  198 (408)
                      ..++.+ ..+|+..|+..|..           .+...+..++.+|..|..+......++... ++..|...|. +..+.+
T Consensus        39 ~Wv~~F-~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~-s~~~~~  116 (386)
T 2bnx_A           39 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD-PAVPNM  116 (386)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCC-TTSHHH
T ss_pred             HHHHHH-HHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhC-CCCchH
Confidence            344444 35778777776641           145778889999999988777777777754 5888888887 467889


Q ss_pred             HHHHHHHHHHhccCCh-hh-HHHHH----------hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc---h----hH
Q 041050          199 RRVAAGAIANLAMNAE-AN-QELIM----------AQGGISLLSTTAADAEDPQTLRMVAGAIANLCGND---K----LQ  259 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~-~~-~~~i~----------~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~---~----~~  259 (408)
                      +..++..|..+|..++ .+ ...+.          +..-+..++..+.++.+.+....+...|-.|...+   .    .|
T Consensus       117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR  196 (386)
T 2bnx_A          117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  196 (386)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence            9999999988888733 23 32222          22344567877766666677655555555555333   2    24


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                      ..+...|..+.+-.+-...++++..+.
T Consensus       197 ~Ef~~~GL~~il~~Lr~~~~~~L~~Qi  223 (386)
T 2bnx_A          197 SELMRLGLHQVLQELREIENEDMKVQL  223 (386)
T ss_dssp             HHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHCChHHHHHHHhccCChhHHHHH
Confidence            455556666654444455677766543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=91.63  E-value=0.39  Score=48.77  Aligned_cols=202  Identities=12%  Similarity=0.012  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHh
Q 041050          154 ANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTA  233 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL  233 (408)
                      ..||+.++.+|+.+-.-+..      ...+..|+..+. ...=+++-.++-.|..+ .  +-...   -.+.++.++..|
T Consensus       242 APVRETaAQtLGaL~hLp~e------~~IL~qLV~~l~-~~~WEVRHGGLLGLKYL-~--DLL~~---Ld~Vv~aVL~GL  308 (800)
T 3oc3_A          242 APVRDAAAYLLSRIYPLIGP------NDIIEQLVGFLD-SGDWQVQFSGLIALGYL-K--EFVED---KDGLCRKLVSLL  308 (800)
T ss_dssp             CHHHHHHHHHHHHHTTTSCS------CCHHHHHTTGGG-CSCHHHHHHHHHHHHHT-G--GGCCC---HHHHHHHHHHHT
T ss_pred             eehHHHHHHHHHHHHhCChh------HHHHHHHHhhcC-CCCeeehhhhHHHHHHH-H--HHHHH---HHHHHHHHHhhc
Confidence            57999999999998222222      223444554444 34567777777777777 2  22221   134566777776


Q ss_pred             hcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcC-CCH-HHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050          234 ADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRC-GHP-DVLSQVARGIANFAKCESRAATQVRFIRCTA  311 (408)
Q Consensus       234 ~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~-~~~-~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~  311 (408)
                       .+.|.+|+..|+.+|..++ .+..-.     ..+..+...|.. +|- .-...++..|+.|+.....+           
T Consensus       309 -~D~DDDVRAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a-----------  370 (800)
T 3oc3_A          309 -SSPDEDIKLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL-----------  370 (800)
T ss_dssp             -TCSSHHHHHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC-----------
T ss_pred             -CCcccHHHHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc-----------
Confidence             4567799999999999998 222222     233445555532 221 12234556666665421110           


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHH-HHHHhcCCHHHHHHHHHHH
Q 041050          312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWEL-VRISRDCSREDIRSLAHRT  390 (408)
Q Consensus       312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L-~~ll~~~~~~~~~~~A~~~  390 (408)
                               -.+...+|.|.+++++.-+.||..+..++..+. +         ..++..+ .+++- .++++++.++.+.
T Consensus       371 ---------~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL-~---------~~~LRLIFQNILL-E~neeIl~lS~~V  430 (800)
T 3oc3_A          371 ---------SIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS-E---------ESIDFLVAEVVLI-EEKDEIREMAIKL  430 (800)
T ss_dssp             ---------CCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC-C---------HHHHHHHHHHHHH-CSCHHHHHHHHHH
T ss_pred             ---------ccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH-h---------hhHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence                     012378999999999999999999999998887 1         1123333 33444 5666776666643


Q ss_pred             Hh-----ccHhhHHHHHhhhh
Q 041050          391 LS-----SSLTFRAEMRRLRI  406 (408)
Q Consensus       391 L~-----~~~~~~~~~~~~~~  406 (408)
                      ..     ..||..--+.-.|+
T Consensus       431 Wk~r~~Ll~~wi~L~MtPIGv  451 (800)
T 3oc3_A          431 LKKRRDLPKNLILHFMNVIGG  451 (800)
T ss_dssp             HHTCSCCCHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHhcCcCCC
Confidence            32     45555555555554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=91.14  E-value=8  Score=35.36  Aligned_cols=178  Identities=11%  Similarity=0.044  Sum_probs=108.9

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHc---CCCCHHHHHHHHHHHHHhcc----CCh
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLR---SFEDETIRRVAAGAIANLAM----NAE  214 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~---~~~~~~v~~~A~~aL~nLa~----~~~  214 (408)
                      +.+...+-+.+..-+..|+..|..... ++   ..++..  +..++..+.   -+.+..+...++.+|..+..    .+.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~~--lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLSN--SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHHT--HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            344555556677778888887775433 32   222221  333444332   13578888888888776632    101


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      ...+.-. .-.+|.|+.-+ .+..+.++..+-.++..++.-      .--...++.++.-+++.++.++..++..+..+-
T Consensus       124 ~~~~~ea-~~~lP~LveKl-Gd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li  195 (266)
T 2of3_A          124 PMSQEEV-SAFVPYLLLKT-GEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYI  195 (266)
T ss_dssp             CCCHHHH-HHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchHHHH-HHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            1111100 12468888887 445567887777766665411      001124455777778899999999998888886


Q ss_pred             ccchhhhhHHHhhhhhccCChhhHHHHHhcCcH---HHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGAL---PWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l---~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      .              . .|..       ....+   |.+..++.+.+..||..|..++..+-..
T Consensus       196 ~--------------~-~G~~-------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~  237 (266)
T 2of3_A          196 T--------------N-AGIS-------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF  237 (266)
T ss_dssp             H--------------H-HCSG-------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred             H--------------h-cCCC-------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            4              0 0332       13467   9999999999999999999888765443

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=90.94  E-value=1.6  Score=47.92  Aligned_cols=139  Identities=9%  Similarity=-0.020  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHHHcCCch-hHHHHHHhCCHHHHHHHHcCCC----CHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050          152 EDANVRIHAVKVVANLAAEEA-NQEKIVEAGGLSSLLMLLRSFE----DETIRRVAAGAIANLAMNAEANQELIMAQGGI  226 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~~~~-~~~~i~~~g~i~~L~~lL~~~~----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i  226 (408)
                      .+=..++.++++++.++.... ....-+=...++.|+.++....    ...++..++|+|+..+.. -.....+.. ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~w-l~~~~~~L~-~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRF-LKAHWNFLR-TVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHH-HHHCHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHH-HhccHHHHH-HHH
Confidence            567889999999999998432 2222222235888888886311    233444566888777665 211111111 123


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh------cccHHHHHH----hhcCCCHHHHHHHHHHHHHhhc
Q 041050          227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS------EGGIRALLG----MVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~------~g~l~~L~~----lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ..|+..+ ..++|.+...|++++.+||.  +++..+..      ...+..++.    ....-++.-+..+..+++.+..
T Consensus       543 ~~L~~~l-~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          543 LKLFEFM-HETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHT-TCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHh-hcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            3444444 44668999999999999993  23333432      112333333    3333456666677788887775

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=90.94  E-value=0.23  Score=45.23  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=17.3

Q ss_pred             chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHH
Q 041050          171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGA  205 (408)
Q Consensus       171 ~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~a  205 (408)
                      +..|......-....|..++. ++++.||..++..
T Consensus        64 ~~VR~~AA~~l~~~~l~~L~~-D~~~~VR~~aA~~   97 (244)
T 1lrv_A           64 WERRAIAVRYSPVEALTPLIR-DSDEVVRRAVAYR   97 (244)
T ss_dssp             HHHHHHHHTTSCGGGGGGGTT-CSSHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHcc-CcCHHHHHHHHHH
Confidence            334444443322334444445 5677788777653

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.08  E-value=9.9  Score=33.83  Aligned_cols=158  Identities=10%  Similarity=0.052  Sum_probs=100.5

Q ss_pred             hhhHHHHHhcCcHHHHHHHhhcC----------CCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHH
Q 041050          214 EANQELIMAQGGISLLSTTAADA----------EDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDV  282 (408)
Q Consensus       214 ~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v  282 (408)
                      ..-.+.| ..+|+..|+..|...          .+......++.+|..++.+......+.+ .+++..|...+.++++.+
T Consensus        34 ~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~  112 (233)
T 2f31_A           34 VSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNM  112 (233)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred             cHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence            3444455 467888888877521          1446677889999999988888887775 567888999999999999


Q ss_pred             HHHHHHHHHHhhccch-hh-hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh-
Q 041050          283 LSQVARGIANFAKCES-RA-ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN-  358 (408)
Q Consensus       283 ~~~a~~aL~nL~~~~~-~~-~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~-  358 (408)
                      +..|...|+.+|.... +. ...+..|+-.      . ....+..-...++..+++ .+.+.+..+...+..+...++. 
T Consensus       113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~------~-~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl  185 (233)
T 2f31_A          113 MIDAAKLLSALCILPQPEDMNERVLEAMTE------R-AEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEEL  185 (233)
T ss_dssp             HHHHHHHHHHHHTCSSSSCHHHHHHHHHHH------H-HHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCH
T ss_pred             HHHHHHHHHHHHhCCCCCChHHHHHHHHHH------H-HHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCH
Confidence            9999998888875221 11 2222222111      1 112334456678887764 4566666666666656655432 


Q ss_pred             ------HHHHHhCCcHHHHHHHHhcCC
Q 041050          359 ------AREMISGGALWELVRISRDCS  379 (408)
Q Consensus       359 ------~~~l~~~g~i~~L~~ll~~~~  379 (408)
                            +..+...|..+.+-.+-....
T Consensus       186 ~~R~~lR~ef~~~Gl~~il~~l~~~~~  212 (233)
T 2f31_A          186 DFRVHIRSELMRLGLHQVLQELREIEN  212 (233)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHCChHHHHHHHhccCC
Confidence                  233447888777776655433

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.42  E-value=12  Score=36.02  Aligned_cols=164  Identities=16%  Similarity=0.124  Sum_probs=99.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCChhhHHHHHh-cCcHHHHHHHhhcCCC
Q 041050          170 EEANQEKIVEAGGLSSLLMLLRS----------FEDETIRRVAAGAIANLAMNAEANQELIMA-QGGISLLSTTAADAED  238 (408)
Q Consensus       170 ~~~~~~~i~~~g~i~~L~~lL~~----------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~  238 (408)
                      ++..+..=+..+|+..|+.+|..          ..+......++.+|..|..+ ......++. .+++..|...| .++.
T Consensus        36 ~~~~Wv~~F~~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~-~~Gl~~vl~~~~~i~~l~~sL-~s~~  113 (386)
T 2bnx_A           36 NPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAM-DPAV  113 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTC-CTTS
T ss_pred             CCcHHHHHHHHhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCC-HHHHHHHHcCcHHHHHHHHHh-CCCC
Confidence            44444333346788888888742          11456677788999999888 777776665 46777777777 6788


Q ss_pred             HHHHHHHHHHHHHHhCCc--hh-HHHHH----------hcccHHHHHHhhc-CCCHHHHHHHHHHHHHhhccchhhhhHH
Q 041050          239 PQTLRMVAGAIANLCGND--KL-QMKLR----------SEGGIRALLGMVR-CGHPDVLSQVARGIANFAKCESRAATQV  304 (408)
Q Consensus       239 ~~v~~~a~~aL~nL~~~~--~~-~~~i~----------~~g~l~~L~~lL~-~~~~~v~~~a~~aL~nL~~~~~~~~~~~  304 (408)
                      +.++..++..|+-+|..+  .+ ...+.          +..-+..++..+. ..+.+.+..++..+-.+.. .++...  
T Consensus       114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~-~~~dl~--  190 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALIT-PAEELD--  190 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHT-TCSCHH--
T ss_pred             chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHC-CCCCHH--
Confidence            899999999999999332  34 33332          2234566777775 4455655555444444442 111100  


Q ss_pred             HhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHH
Q 041050          305 RFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIE  346 (408)
Q Consensus       305 ~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~  346 (408)
                              .--..|..+...|+.+.+-.+=..+++++....-
T Consensus       191 --------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Qi~  224 (386)
T 2bnx_A          191 --------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  224 (386)
T ss_dssp             --------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             --------HHHHHHHHHHHCChHHHHHHHhccCChhHHHHHH
Confidence                    0123466667777777665554445666655443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=89.21  E-value=3.6  Score=44.56  Aligned_cols=184  Identities=10%  Similarity=0.010  Sum_probs=98.8

Q ss_pred             CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHh--cCcHHH
Q 041050          152 EDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMA--QGGISL  228 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~--~g~i~~  228 (408)
                      .++.+|..++++++.++. -..+...+ . ..++.|+..|.    +.++..|++++.+++.+..   ..+..  ...+..
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l~~~~~~l-~-~vl~~l~~~l~----~~v~~~A~~al~~l~~~~~---~~l~p~~~~ll~~  588 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWLMENPAYI-P-PAINLLVRGLN----SSMSAQATLGLKELCRDCQ---LQLKPYADPLLNA  588 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHHC----CH-H-HHHHHHHHHHH----SSCHHHHHHHHHHHHHHCH---HHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHhcCHHHH-H-HHHHHHHHHhC----hHHHHHHHHHHHHHHHHHH---HhccccHHHHHHH
Confidence            489999999999998876 11111111 1 13566666662    4689999999999996532   22221  123344


Q ss_pred             HHHHhhcC-CCHHHHHHHHHHHHHHhCC--chhHHHHHhcccHHHHHH----hhcCC--CHHHHHHHHHHHHHhhccchh
Q 041050          229 LSTTAADA-EDPQTLRMVAGAIANLCGN--DKLQMKLRSEGGIRALLG----MVRCG--HPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       229 Lv~lL~~~-~~~~v~~~a~~aL~nL~~~--~~~~~~i~~~g~l~~L~~----lL~~~--~~~v~~~a~~aL~nL~~~~~~  299 (408)
                      |..++.+. .+...+..+..+++.++..  ++.+....+ ..++.++.    .+...  +++.......++..|+.    
T Consensus       589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~----  663 (971)
T 2x1g_F          589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST----  663 (971)
T ss_dssp             HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH----
Confidence            55666442 3567888888888888732  233332222 23344443    33322  44444555555555543    


Q ss_pred             hhhHHHhhhhhccCC-------hhhHHHHHhcCcHHHHHHhccC--CCHHHHHHHHHHHHHHcc
Q 041050          300 AATQVRFIRCTATGV-------KSGRSLLIEDGALPWIVQNANN--EAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~-------~~~~~~i~~~g~l~~Lv~lL~~--~~~~v~~~a~~aL~~La~  354 (408)
                          +..++....+.       ++.... .-..+++.+...+..  .+.++.+.+++++..++.
T Consensus       664 ----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          664 ----LFSSLNTDVDEQATDQPIVQPVLL-VMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             ----HHHHHTC-------------CCHH-HHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             ----HHhhcCCCcCcccccccCCCchHH-HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                00001110000       001111 123567766666643  467899999999988664

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=88.25  E-value=1.9  Score=32.35  Aligned_cols=61  Identities=20%  Similarity=0.375  Sum_probs=42.9

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhhhhh
Q 041050           20 IAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLLQLT   94 (408)
Q Consensus        20 ~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~   94 (408)
                      +..|+..++.-...+..++-|+.++              ...+...+.||++|...|..+|.++.+|+.-+-...
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~--------------~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~   62 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNL--------------AEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNAS   62 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3455555555555555555555543              344557889999999999999999999998866554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=88.23  E-value=8  Score=41.62  Aligned_cols=135  Identities=7%  Similarity=0.066  Sum_probs=84.5

Q ss_pred             cCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcC--CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHH
Q 041050          150 ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRS--FEDETIRRVAAGAIANLAMNAEANQELIMAQGGIS  227 (408)
Q Consensus       150 ~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~  227 (408)
                      .+.+-..++.++.+++.++..-...    ...-++.++..+..  .+++.++..++++++.++..-..+. ... ...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence            4567788999999999998732110    01224455554421  1467899999999998886522222 232 35778


Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHh--cccHHHHHHhhcC--CCHHHHHHHHHHHHHhhc
Q 041050          228 LLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRS--EGGIRALLGMVRC--GHPDVLSQVARGIANFAK  295 (408)
Q Consensus       228 ~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~--~g~l~~L~~lL~~--~~~~v~~~a~~aL~nL~~  295 (408)
                      .|+..|.   ++.++..|+.++.++|.+  .+..+..  ...+..|..++..  -+...+..+..+++.++.
T Consensus       533 ~l~~~l~---~~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~  599 (963)
T 2x19_B          533 LVLHALG---NPELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS  599 (963)
T ss_dssp             HHHHHTT---CGGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhC---CchHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence            8888873   278999999999999921  1111211  1233445555553  256778888888888874

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=88.17  E-value=11  Score=40.58  Aligned_cols=136  Identities=9%  Similarity=-0.025  Sum_probs=84.5

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh--cCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHH
Q 041050          193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA--DAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIR  269 (408)
Q Consensus       193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~  269 (408)
                      +.+...+..++++++.++.......     ..-++.++..+.  ..++|.++..++++++.++.. .... ... ...++
T Consensus       460 ~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~  532 (963)
T 2x19_B          460 PYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLP  532 (963)
T ss_dssp             SCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHH
T ss_pred             CCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHH
Confidence            3567888999999999987632211     122344444332  225788999999999998832 1111 222 35777


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC--CHHHHHHHHH
Q 041050          270 ALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE--AAPIRRHIEL  347 (408)
Q Consensus       270 ~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~--~~~v~~~a~~  347 (408)
                      .|+..+.+  +.|+..|++++.+|+..   ....+       .  +.     . ..++..|..++.+.  +.+.+..+..
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~---~~~~l-------~--p~-----~-~~il~~l~~~l~~~~~~~~~~~~~~e  592 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRE---CKYDL-------P--PY-----A-ANIVAVSQDVLMKQIHKTSQCMWLMQ  592 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHH---TGGGC-------T--TT-----H-HHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHH---HHHHH-------H--hh-----H-HHHHHHHHHHhccCCCChHHHHHHHH
Confidence            78877743  89999999999999851   00000       0  00     0 12344555555542  5678888888


Q ss_pred             HHHHHccC
Q 041050          348 ALCHLAQH  355 (408)
Q Consensus       348 aL~~La~~  355 (408)
                      +++.++..
T Consensus       593 ai~~i~~~  600 (963)
T 2x19_B          593 ALGFLLSA  600 (963)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            88888764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=88.09  E-value=5.8  Score=43.50  Aligned_cols=134  Identities=11%  Similarity=-0.013  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC-CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhh
Q 041050          157 RIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS-FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA  234 (408)
Q Consensus       157 ~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~  234 (408)
                      +..+..+|..++. .+.   .++.. ..+.+-..+.+ ..+-..+..++++++.++.........-.-...++.|..+..
T Consensus       430 ~~~~~~~L~~l~~~~~~---~~l~~-v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~  505 (1049)
T 3m1i_C          430 YKSEREVLVYLTHLNVI---DTEEI-MISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV  505 (1049)
T ss_dssp             HHHHHHHHHHHHHHCHH---HHHHH-HHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHH---HHHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence            4455666666664 221   11111 12334444432 246678899999999998642222111111113334444321


Q ss_pred             c----CCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          235 D----AEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       235 ~----~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      .    .++|.++..++++++.++..-....... ...++.|+..+.++++.|+..|+.++.+|+.
T Consensus       506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~  569 (1049)
T 3m1i_C          506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-RTVILKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1049)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            1    1233344457788887762111111121 1356667777788889999999999999985

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=87.75  E-value=2.7  Score=46.37  Aligned_cols=163  Identities=11%  Similarity=0.029  Sum_probs=101.9

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHHcC----CchhHHHHHHhCCHHHHH----HHHcCCCCHHHHHHHHHHHHHh
Q 041050          142 LHKILSLLES----EDANVRIHAVKVVANLAA----EEANQEKIVEAGGLSSLL----MLLRSFEDETIRRVAAGAIANL  209 (408)
Q Consensus       142 v~~Ll~lL~s----~~~~v~~~A~~aL~nLa~----~~~~~~~i~~~g~i~~L~----~lL~~~~~~~v~~~A~~aL~nL  209 (408)
                      +..+..++.+    .++.++..++-++++|..    +...    +....++.+.    ..+.. .+..-+..++.+|+|+
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~----c~~~~v~~i~~~l~~~~~~-~~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVS----CPDELLQPLHDLLSQSSDR-AKEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSS----CCGGGTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCC----CCHHHHHHHHHHHHHHHhc-CChHHHHHHHHHhhcc
Confidence            3444556654    567788888888877764    1110    0111234443    44453 4666777899999999


Q ss_pred             ccCChhhHHHHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhh--cCCCH
Q 041050          210 AMNAEANQELIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMV--RCGHP  280 (408)
Q Consensus       210 a~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL--~~~~~  280 (408)
                      ...           ..++.|..++..      +....++..|+++|.+++.. +..        +-+.++++.  ...++
T Consensus       468 g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~  528 (1056)
T 1lsh_A          468 GQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKS  528 (1056)
T ss_dssp             TCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCH
T ss_pred             CCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCCh
Confidence            875           256777777632      22457888899999999732 222        122366666  56788


Q ss_pred             HHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccC
Q 041050          281 DVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       281 ~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~  355 (408)
                      ++|..|...|..-.-                           ....+..+...+.. .+..|...+...|.+++..
T Consensus       529 EvRiaA~~~Lm~t~P---------------------------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s  577 (1056)
T 1lsh_A          529 ELRIRSCIVFFESKP---------------------------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  577 (1056)
T ss_dssp             HHHHHHHHHHHHTCC---------------------------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCc---------------------------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhc
Confidence            898877777754321                           11355667777765 4777888888888888876

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=87.47  E-value=21  Score=34.33  Aligned_cols=154  Identities=10%  Similarity=0.067  Sum_probs=99.3

Q ss_pred             hhHHHHHhcCcHHHHHHHhhc----------CCCHHHHHHHHHHHHHHhCCchhHHHHHh-cccHHHHHHhhcCCCHHHH
Q 041050          215 ANQELIMAQGGISLLSTTAAD----------AEDPQTLRMVAGAIANLCGNDKLQMKLRS-EGGIRALLGMVRCGHPDVL  283 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~----------~~~~~v~~~a~~aL~nL~~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~  283 (408)
                      .-.+.|. .+|+..|+..|..          ..+....-.++.+|..+..+......+++ ..++..|...+.++.+.++
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~  179 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMM  179 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHH
Confidence            3334444 5688888888742          23456777889999999988888887775 4678999999999999999


Q ss_pred             HHHHHHHHHhhccch-hh-hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchh--
Q 041050          284 SQVARGIANFAKCES-RA-ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVN--  358 (408)
Q Consensus       284 ~~a~~aL~nL~~~~~-~~-~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~--  358 (408)
                      ..|...|+.+|.-.. +. ...+..|+-      ..+. ..+..-...++..+++ .+.+.+..+...+..+....+.  
T Consensus       180 ~~aleLL~~lc~~~~~~gG~~~VL~Al~------~~~~-~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~  252 (383)
T 3eg5_B          180 IDAAKLLSALCILPQPEDMNERVLEAMT------ERAE-MDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD  252 (383)
T ss_dssp             HHHHHHHHHHHTCCSSTTHHHHHHHHHH------HHHH-HHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             HHHHHHHHHHHhCcCcCCcHHHHHHHHH------HHHH-hCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH
Confidence            999999998885221 11 122222111      1111 2344556778888876 4666666666666556655322  


Q ss_pred             -----HHHHHhCCcHHHHHHHHh
Q 041050          359 -----AREMISGGALWELVRISR  376 (408)
Q Consensus       359 -----~~~l~~~g~i~~L~~ll~  376 (408)
                           +..+...|..+.+..+-.
T Consensus       253 ~R~~lR~ef~~~Gl~~il~~lr~  275 (383)
T 3eg5_B          253 FRVHIRSELMRLGLHQVLQELRE  275 (383)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCChHHHHHHHhc
Confidence                 233447888887777443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.70  E-value=6.1  Score=39.23  Aligned_cols=89  Identities=17%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHH
Q 041050          151 SEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLL  229 (408)
Q Consensus       151 s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~L  229 (408)
                      .++...+..|+..+..... -|+.++.     ++..++.++. +++..+|..|+..|..+|.+  ++..++     +..|
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcE-Ded~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL  105 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCE-DEDVSIRRQAIKELPQFATG--ENLPRV-----ADIL  105 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHT-CSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHh-cccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHH
Confidence            3467888888888877655 6777654     4777899998 57899999999999999987  444444     5678


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHHh
Q 041050          230 STTAADAEDPQTLRMVAGAIANLC  253 (408)
Q Consensus       230 v~lL~~~~~~~v~~~a~~aL~nL~  253 (408)
                      +.+| .++++.-...+-.+|..|-
T Consensus       106 ~QlL-qtdd~~E~~~V~~sL~sll  128 (507)
T 3u0r_A          106 TQLL-QTDDSAEFNLVNNALLSIF  128 (507)
T ss_dssp             HHHT-TCCCHHHHHHHHHHHHHHH
T ss_pred             HHHH-hccchHHHHHHHHHHHHHH
Confidence            8888 4666665555555554443

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=85.92  E-value=6.5  Score=35.99  Aligned_cols=128  Identities=13%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHHHh---CCchhHHHHHh-cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050          236 AEDPQTLRMVAGAIANLC---GNDKLQMKLRS-EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA  311 (408)
Q Consensus       236 ~~~~~v~~~a~~aL~nL~---~~~~~~~~i~~-~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~  311 (408)
                      +.++.+...++.+|..+.   .....+..-.+ .-.+|.|+.-+-++...++..+-.++..+..                
T Consensus        98 d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~----------------  161 (266)
T 2of3_A           98 ETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSD----------------  161 (266)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHH----------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH----------------
Confidence            467788888877777764   11111110011 2356778887777777788877777766653                


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcH---HHHHHHHhcCCHHHHHHHHH
Q 041050          312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGAL---WELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i---~~L~~ll~~~~~~~~~~~A~  388 (408)
                              ..--..+.+.++.-+++.+..+|..++..+..+-...--.    ...++   +.+..++.+ .+..+|.+|.
T Consensus       162 --------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D-~d~~VR~aAl  228 (266)
T 2of3_A          162 --------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD-KDVNVRNAAI  228 (266)
T ss_dssp             --------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC-SSHHHHHHHH
T ss_pred             --------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC-CCHHHHHHHH
Confidence                    0011236778888889999999999998888876531111    23467   888888884 5667888888


Q ss_pred             HHHh
Q 041050          389 RTLS  392 (408)
Q Consensus       389 ~~L~  392 (408)
                      .++.
T Consensus       229 ~~lv  232 (266)
T 2of3_A          229 NVLV  232 (266)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=85.06  E-value=8.2  Score=41.68  Aligned_cols=165  Identities=11%  Similarity=0.028  Sum_probs=89.0

Q ss_pred             HHHHHHHHHHHHHcC-Cc-hhHHHHHHhCCHHHHHHHHcC----CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050          155 NVRIHAVKVVANLAA-EE-ANQEKIVEAGGLSSLLMLLRS----FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL  228 (408)
Q Consensus       155 ~v~~~A~~aL~nLa~-~~-~~~~~i~~~g~i~~L~~lL~~----~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~  228 (408)
                      +.|..+..+|..++. .+ ..-..+     ++.+-..+.+    ..+-..+..|+.+++.++.......     ...++.
T Consensus       436 ~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~  505 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE-----KRQIPR  505 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh-----hHHHHH
Confidence            355667777777665 22 111222     1222222221    1355678889999999987632211     133444


Q ss_pred             HHHHh---h-cCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhH
Q 041050          229 LSTTA---A-DAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQ  303 (408)
Q Consensus       229 Lv~lL---~-~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~  303 (408)
                      ++.++   . ++.+|.++..++++++.++.. ......+  ...++.|+..+.   +.++..|++++.+|+..       
T Consensus       506 l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~-------  573 (971)
T 2x1g_F          506 LMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD-------  573 (971)
T ss_dssp             HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH-------
Confidence            44433   2 124889999999999998821 1111111  134555666662   78999999999999851       


Q ss_pred             HHhhhhhccCChhhHHHHH--hcCcHHHHHHhccCC--CHHHHHHHHHHHHHHcc
Q 041050          304 VRFIRCTATGVKSGRSLLI--EDGALPWIVQNANNE--AAPIRRHIELALCHLAQ  354 (408)
Q Consensus       304 ~~~~i~~~~~~~~~~~~i~--~~g~l~~Lv~lL~~~--~~~v~~~a~~aL~~La~  354 (408)
                                   ++..+.  -..++..+..++.++  +.+.+..+..+++.++.
T Consensus       574 -------------~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~  615 (971)
T 2x1g_F          574 -------------CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS  615 (971)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred             -------------HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence                         111111  013444555555542  45666666666666654

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=83.97  E-value=7.4  Score=29.97  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHh
Q 041050           34 RKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRS   88 (408)
Q Consensus        34 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   88 (408)
                      ..+.++|+..+++.+..+..+.+.+...+...+.+|+...+.....|.++..|+.
T Consensus        39 ~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R   93 (101)
T 3u1c_A           39 SKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR   93 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444333333333444444444444444444444444444443

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=83.83  E-value=7.5  Score=29.90  Aligned_cols=56  Identities=20%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhh
Q 041050           34 RKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQ   89 (408)
Q Consensus        34 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   89 (408)
                      ..+.++++..+++.+..+..+.+.+...+...+.+|+.........|.++..|+..
T Consensus        39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRr   94 (101)
T 3u59_A           39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRR   94 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555444443333333444444444444444444444455555554443

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=80.70  E-value=14  Score=28.07  Aligned_cols=69  Identities=25%  Similarity=0.314  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhcccccchhHhhHHHHHhHHHHHHHHhhhHHHHHHHHhhhh
Q 041050           17 AEDIAEIRKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEIVILRSQLL   91 (408)
Q Consensus        17 ~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~   91 (408)
                      .++...|+.-+..|..++...|.+...+..-++++..+      =|.+..++.-+....+..++.-...|..++.
T Consensus        25 ~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTas------LFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~   93 (97)
T 2eqb_B           25 DDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS------LFDEANNMVADARKEKYAIEILNKRLTEQLR   93 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34455556666666666666666655555555544322      1344445555555555555555555555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	408
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	0.003
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-10
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-09
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	8e-13
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-05
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-07
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-04

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 47/266 (17%), Positives = 98/266 (36%), Gaps = 6/266 (2%)

Query: 144 KILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVA 202
           K +  L S+D   +      + +   + E+ ++++ + GG+  L+ LLRS  ++ +++ A
Sbjct: 6   KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAA 64

Query: 203 AGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKL 262
           AGA+ NL   +  N+     Q GI    +      + +  + + G + NL   D+L+ +L
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124

Query: 263 RSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR--AATQVRFIRCTATGVKSGRSL 320
            ++     L   V           +         E    A   +R +     G ++ R+ 
Sbjct: 125 IADALP-VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 321 LIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCSR 380
                +L   VQN    +    + +E  +C L  +     +        +L   +R+   
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVL-HNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 381 EDIRSLAHRTLSSSLTFRAEMRRLRI 406
           E   +      S  +        L  
Sbjct: 243 EKSSTGCFSNKSDKMMNNNYDCPLPE 268

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-09
 Identities = 39/264 (14%), Positives = 86/264 (32%), Gaps = 17/264 (6%)

Query: 135 KLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSF 193
           ++++  G+ K++ LL S + NV+  A   + NL      N+ +     G+   + LLR  
Sbjct: 39  QVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRT 98

Query: 194 EDETIRRVAAGAIANLAMNAEANQE-------------LIMAQGGISLLSTTAADAEDPQ 240
            +  I++   G + NL+   E  +E             +I   G     S  + +  DP+
Sbjct: 99  GNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158

Query: 241 TLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA 300
                 G + NL   D  +  +R+  G+   L  +      V +      +         
Sbjct: 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSL--MAYVQNCVAASRCDDKSVENCMCVLH 216

Query: 301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIR-RHIELALCHLAQHEVNA 359
               R      T  +                   +N++  +   + +  L     +   +
Sbjct: 217 NLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGS 276

Query: 360 REMISGGALWELVRISRDCSREDI 383
             +    A+   + +     ++  
Sbjct: 277 GWLYHSDAIRTYLNLMGKSKKDAT 300

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 3e-09
 Identities = 20/132 (15%), Positives = 49/132 (37%), Gaps = 6/132 (4%)

Query: 136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFE- 194
             ++ GL +I  LL+S +++V      +++N++        +        +  LL S   
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTG 385

Query: 195 ----DETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA 250
                E I   A   + NL  +     +   +   ++ +      +  P+        ++
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 251 NLCGNDKLQMKL 262
           ++  + +LQ  L
Sbjct: 446 DMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 18/127 (14%)

Query: 268 IRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGAL 327
           I   +  +        +  A  I +    +  A  QV                  + G +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY-----------------QLGGI 46

Query: 328 PWIVQNANNEAAPIRRHIELALCHLAQH-EVNAREMISGGALWELVRISRDCSREDIRSL 386
             +V    +    +++    AL +L      N  E      + E V + R     +I+  
Sbjct: 47  CKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQ 106

Query: 387 AHRTLSS 393
               L +
Sbjct: 107 LTGLLWN 113

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 33/155 (21%), Positives = 65/155 (41%), Gaps = 4/155 (2%)

Query: 144 KILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGG-LSSLLMLLRSFEDETIRRVA 202
           ++  LL  ED  V   A  +V  L+ +EA++  I+ +   +S+++  +++  D    R  
Sbjct: 21  ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCT 80

Query: 203 AGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMK 261
           AG + NL+ + E     I   GGI  L            L      + NL    +  +M 
Sbjct: 81  AGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGS-PVDSVLFYAITTLHNLLLHQEGAKMA 138

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296
           +R  GG++ ++ ++   +   L+     +   A  
Sbjct: 139 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 8e-14
 Identities = 43/216 (19%), Positives = 75/216 (34%), Gaps = 19/216 (8%)

Query: 175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAA 234
           +  +    +  L  LL   ED+ +   AA  +  L+    +   ++ +   +S +  T  
Sbjct: 11  DAELATRAIPELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69

Query: 235 DAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA 294
           +  D +T R  AG + NL  + +  + +   GGI AL+ M+      VL      + N  
Sbjct: 70  NTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL 129

Query: 295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ 354
             +  A   VR                   G L  +V   N             L  LA 
Sbjct: 130 LHQEGAKMAVR-----------------LAGGLQKMVALLNKTNVKFLAITTDCLQILAY 172

Query: 355 HEVNARE-MISGGALWELVRISRDCSREDIRSLAHR 389
               ++  +++ G    LV I R  + E +     R
Sbjct: 173 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR 208

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 37/195 (18%), Positives = 65/195 (33%), Gaps = 5/195 (2%)

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           A   + +    AE  Q  +    G+ ++            ++   G I NL         
Sbjct: 333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAP 392

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATG----VKSG 317
           LR +G I  L+ ++   H D   + + G       E     ++      A          
Sbjct: 393 LREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHN 452

Query: 318 RSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRD 377
           R ++     +P  VQ   +    I+R     LC LAQ +  A  + + GA   L  +   
Sbjct: 453 RIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS 512

Query: 378 CSREDIRSLAHRTLS 392
            + E + + A   L 
Sbjct: 513 RN-EGVATYAAAVLF 526

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 1e-09
 Identities = 21/124 (16%), Positives = 41/124 (33%), Gaps = 2/124 (1%)

Query: 171 EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS 230
            A+Q+         +    +     E I     GA+  LA +   N+ +I     I L  
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFV 466

Query: 231 TTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGI 290
                       R+ AG +  L  + +    + +EG    L  ++   +  V +  A  +
Sbjct: 467 QLLYS-PIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 291 ANFA 294
              +
Sbjct: 526 FRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 2e-09
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRR 200
            +   + LL S   N++  A  V+  LA ++   E I   G  + L  LL S  +E +  
Sbjct: 461 TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS-RNEGVAT 519

Query: 201 VAAGAIANLA 210
            AA  +  ++
Sbjct: 520 YAAAVLFRMS 529

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.4 bits (163), Expect = 8e-13
 Identities = 46/344 (13%), Positives = 119/344 (34%), Gaps = 31/344 (9%)

Query: 66  HKTLEDETLQKRKLEEEIVILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDS 125
           +K        +R+ + + V LR          + + K   R  F     G D   +   S
Sbjct: 12  NKGRFSADELRRRRDTQQVELRKAKRD-----EALAK---RRNFIPPTDGADSDEEDESS 63

Query: 126 GNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQ--EKIVEAGGL 183
            +  +   ++L ++  L ++   L S+D   ++ A      + + E     + +++AG +
Sbjct: 64  VSADQQFYSQLQQE--LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVV 121

Query: 184 SSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLR 243
             L+  +R  + E ++  AA A+ N+A    A  ++++    +  L          +   
Sbjct: 122 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV-PLFIQLLYTGSVEVKE 180

Query: 244 MVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAAT 302
               A+ N+   +   +  +     +  +LG+     P ++      ++N  + +     
Sbjct: 181 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240

Query: 303 QVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREM 362
                              +   ALP + +   +           A+ +L+     A + 
Sbjct: 241 WS-----------------VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQA 283

Query: 363 ISGGALWELVRISRDCSREDIRSLAHRTLSSSLTFRAEMRRLRI 406
           +    + + +          +++ A R + + +T      ++ I
Sbjct: 284 VIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 327

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.5 bits (132), Expect = 5e-09
 Identities = 41/276 (14%), Positives = 94/276 (34%), Gaps = 25/276 (9%)

Query: 24  RKLLQNEIHMRKTAEEELNKLKSRLGQYTESGSCRDAEMSKLHKTLEDETLQKRKLEEEI 83
           R+    ++ +RK   +E    +      T+     + + S +    +  +  +++L +  
Sbjct: 23  RRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT 82

Query: 84  VILRSQLLQLTFEADQMQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLH 143
             L S  +Q    A                       +FR   + +  P   +  Q G+ 
Sbjct: 83  QQLNSDDMQEQLSATV---------------------KFRQILSREHRPPIDVVIQAGVV 121

Query: 144 KILSLL--ESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
             L     E++   +++ A   + N+A+  + Q K+V       L + L       ++  
Sbjct: 122 PRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQ 181

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           A  A+ N+A ++   ++  + Q           ++  P  +R     ++NLC   K Q  
Sbjct: 182 AIWALGNVAGDSTDYRD-YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 240

Query: 262 LR-SEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296
                  +  L  ++     + L      I+  +  
Sbjct: 241 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG 276

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 5e-12
 Identities = 23/155 (14%), Positives = 51/155 (32%), Gaps = 2/155 (1%)

Query: 144 KILSLLESEDANVRIHAVKVVANLAAEEANQ--EKIVEAGGLSSLLMLLRSFEDETIRRV 201
            I+  + S +   ++ A +    L + E     + I+ AG +   +  L   +   I+  
Sbjct: 17  DIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFE 76

Query: 202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMK 261
           +A A+ N+A       + ++  G I    +  A      + + V             +  
Sbjct: 77  SAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDL 136

Query: 262 LRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC 296
           +   G I  LL ++       L+        +   
Sbjct: 137 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 171

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 4/143 (2%)

Query: 169 AEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLA-MNAEANQELIMAQGGIS 227
           A+  + +  V    +  ++  + S  +   +  A  A   L     +   + I+  G I 
Sbjct: 2   ADIGSNQGTVN-WSVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIP 59

Query: 228 LLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQV 286
              +     +        A A+ N+  G  +    +   G I A + ++   H  +  Q 
Sbjct: 60  KFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119

Query: 287 ARGIANFAKCESRAATQVRFIRC 309
              + N A   S     V     
Sbjct: 120 VWALGNIAGDGSAFRDLVIKHGA 142

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.3 bits (100), Expect = 4e-05
 Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFED 195
           + +   L    SLL +   N++  A   ++N+ A   +Q + V   GL   L+ + S  D
Sbjct: 268 VIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD 327

Query: 196 ETIRRVAAGAIANLAMNAEANQ-ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANL-- 252
              ++ AA AI N        Q   ++  G I  L      A+D + ++++  AI+N+  
Sbjct: 328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPL-MNLLSAKDTKIIQVILDAISNIFQ 386

Query: 253 -----CGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF 293
                   +KL + +   GG+  +  + R  +  V       I  +
Sbjct: 387 AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 432

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 133 ITKLFEQVGLHKILSLLESEDANVRIHAVKVVANL-------AAEEANQEKIVEAGGLSS 185
           I  L     +  +++LL ++D  +    +  ++N+          E     I E GGL  
Sbjct: 350 IVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 409

Query: 186 LLMLLRSFEDETIRRVAAGAIAN 208
           +  L R  E+E++ + +   I  
Sbjct: 410 IEALQRH-ENESVYKASLNLIEK 431

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 1e-07
 Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 2/168 (1%)

Query: 141 GLHKILS-LLESEDANVRIHAVKVVANLA-AEEANQEKIVEAGGLSSLLMLLRSFEDETI 198
           G+H ++   LE+  A +R  A +++   +    A QE+++  G L  LL LL     +T+
Sbjct: 59  GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTV 118

Query: 199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKL 258
           R  A  AI+ L    EA     +   G S+L            ++        L G+ + 
Sbjct: 119 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 178

Query: 259 QMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRF 306
           +  L S G ++ L+ +VR  H      V   + +      +   + R 
Sbjct: 179 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 9e-04
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 14/245 (5%)

Query: 144 KILSLLESEDANVRIHAVKVVANLA--AEEANQEKIVEAGGLSSLLMLLRSFEDETIRRV 201
            IL LLE ++  V+  AVK +  L    +E   E IV+      L   + S + E +R +
Sbjct: 49  MILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDT-----LCTNMLS-DKEQLRDI 102

Query: 202 AAGAIANL--AMNAEANQELIMAQ---GGISLLSTTAADAEDPQTLRMVAGAIANLCGND 256
           ++  +  +   +   ++   + A         L++  A  ED          +A++    
Sbjct: 103 SSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ 162

Query: 257 KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKS 316
              +       +  LL  +      V  +    + +              I    + +  
Sbjct: 163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV-DLIEHLLSELSK 221

Query: 317 GRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISR 376
             S+      +  I   +      I  ++E  +  + +      + +    +       R
Sbjct: 222 NDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR 281

Query: 377 DCSRE 381
            C +E
Sbjct: 282 RCPKE 286

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	408
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.93
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.93
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.9
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.89
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.86
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.74
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.46
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.4
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.39
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.36
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.3
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.24
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.11
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.55
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.5
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.48
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.4
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.36
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.36
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.13
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.08
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	96.84
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.51
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.45
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.59
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	95.1
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	94.84
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	93.11
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.79
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	92.54
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.36
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.17

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-23  Score=206.76  Aligned_cols=277  Identities=19%  Similarity=0.298  Sum_probs=232.9

Q ss_pred             HHhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-CC
Q 041050           75 QKRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-SE  152 (408)
Q Consensus        75 ~~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s~  152 (408)
                      -+.++++.+..+++..++....+.+ .|+.++..                     .++.+..+++.|++|.|+++|+ ++
T Consensus        11 ~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~---------------------~~~~~~~i~~~g~i~~Lv~lL~~~~   69 (434)
T d1q1sc_          11 VNWSVEDIVKGINSNNLESQLQATQAARKLLSRE---------------------KQPPIDNIIRAGLIPKFVSFLGKTD   69 (434)
T ss_dssp             SSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSS---------------------SCCCHHHHHHTTCHHHHHHHTTCGG
T ss_pred             hhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC---------------------CCchHHHHHHCCCHHHHHHHHccCC
Confidence            3467889999999998888877765 55544332                     4556778999999999999997 56


Q ss_pred             CHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHH
Q 041050          153 DANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLST  231 (408)
Q Consensus       153 ~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~  231 (408)
                      ++++|..|+++|++++. .+..+..+++.|++|.|+.+|.+ +++.++..|+++|+||+.+++..+..+.+.|+++.|+.
T Consensus        70 ~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~-~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~  148 (434)
T d1q1sc_          70 CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLAS-PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA  148 (434)
T ss_dssp             GHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhcccc-CCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHH
Confidence            78999999999999987 67888999999999999999984 68999999999999999987888888888888776655


Q ss_pred             Hhh----------------------------------------------cCCCHHHHHHHHHHHHHHh-CCchhHHHHHh
Q 041050          232 TAA----------------------------------------------DAEDPQTLRMVAGAIANLC-GNDKLQMKLRS  264 (408)
Q Consensus       232 lL~----------------------------------------------~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~  264 (408)
                      ++.                                              .+++++++..+++++++++ .++.....+.+
T Consensus       149 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~  228 (434)
T d1q1sc_         149 LLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK  228 (434)
T ss_dssp             HTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhh
Confidence            331                                              2457888889999999999 44566677788


Q ss_pred             cccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHH
Q 041050          265 EGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRH  344 (408)
Q Consensus       265 ~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~  344 (408)
                      .|+++.|+.++.++++.++..++++|.+++.                 +++.....+.+.|+++.|+.++.+.+++++..
T Consensus       229 ~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~-----------------~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~  291 (434)
T d1q1sc_         229 KGVVPQLVKLLGATELPIVTPALRAIGNIVT-----------------GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKE  291 (434)
T ss_dssp             TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHH
T ss_pred             cccchhcccccccchhhhhhchhhhhhhHHh-----------------hhhHHHHHHHhccccchHHHhhcccchhhhHH
Confidence            9999999999999999999999999999997                 78888888999999999999999999999999


Q ss_pred             HHHHHHHHccCc-hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          345 IELALCHLAQHE-VNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       345 a~~aL~~La~~~-~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      ++++|++++... +....+.+.|+++.++.++.+.+.+ ++..|.+++
T Consensus       292 a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~-v~~~a~~~l  338 (434)
T d1q1sc_         292 ATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFK-TQKEAAWAI  338 (434)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHH-HHHHHHHHH
T ss_pred             HHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChH-HHHHHHHHH
Confidence            999999999864 4556677999999999999876654 455555444

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.3e-23  Score=211.80  Aligned_cols=291  Identities=14%  Similarity=0.203  Sum_probs=235.7

Q ss_pred             HHHhhhHHHHHHHHhhhhhhhHHHHH-HHhhhhcccccccccccccchhhhhhcCCCCchHHHHHHhcCHHHHHHhhc-C
Q 041050           74 LQKRKLEEEIVILRSQLLQLTFEADQ-MQKCLERGEFGNTFTGLDKHSQFRDSGNGQKAPITKLFEQVGLHKILSLLE-S  151 (408)
Q Consensus        74 ~~~~~~~~~~~~l~~~l~~~~~~~~~-~r~~~~~~~~~~~~~~~~~~~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~-s  151 (408)
                      ...+.+.+.+..+++...+....+.. .|+.++..                     .++++..+++.|++|.|+.+++ .
T Consensus        73 ~~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~---------------------~~~~i~~ii~~g~i~~Lv~~l~~~  131 (503)
T d1wa5b_          73 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE---------------------HRPPIDVVIQAGVVPRLVEFMREN  131 (503)
T ss_dssp             ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCS---------------------SSCSHHHHHHTTCHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC---------------------CCchHHHHHHCCChHHHHHHHcCC
Confidence            34456777777777777666655554 44444322                     5667889999999999999998 5


Q ss_pred             CCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050          152 EDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS  230 (408)
Q Consensus       152 ~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv  230 (408)
                      .++.++..|+++|+||+. ++.....+.+.|+++.++.+|.+ ++.+++..|+|+|+||+.+++..+..+++.|+++.|+
T Consensus       132 ~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s-~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~  210 (503)
T d1wa5b_         132 QPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT-GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL  210 (503)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcC-CChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccch
Confidence            678899999999999998 66777888889999999999984 6889999999999999998799999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhh
Q 041050          231 TTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRC  309 (408)
Q Consensus       231 ~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~  309 (408)
                      .++ .+.++.+.+.++|+++|+|.+ +.........++++.|+.++.++|++++..+++++.+++.              
T Consensus       211 ~ll-~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~--------------  275 (503)
T d1wa5b_         211 GLF-NSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSD--------------  275 (503)
T ss_dssp             HGG-GSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS--------------
T ss_pred             hhc-ccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhcc--------------
Confidence            998 567789999999999999944 3334444557899999999999999999999999999997              


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhH-HHHHhCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          310 TATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNA-REMISGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       310 ~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~-~~l~~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                         ++++....+.+.|+++.++.++.++++.++..++.++++++.+.+.. ..+.+.|+++.|..++.+.++ .++..+.
T Consensus       276 ---~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~-~i~~~~~  351 (503)
T d1wa5b_         276 ---GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKKEAC  351 (503)
T ss_dssp             ---SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCH-HHHHHHH
T ss_pred             ---CCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCH-HHHHHHH
Confidence               77777888999999999999999999999999999999999986554 456699999999999986544 4555555


Q ss_pred             HHHh----ccHhhHHHHHhhh
Q 041050          389 RTLS----SSLTFRAEMRRLR  405 (408)
Q Consensus       389 ~~L~----~~~~~~~~~~~~~  405 (408)
                      ++++    .++.....+...|
T Consensus       352 ~~l~nl~~~~~~~~~~i~~~~  372 (503)
T d1wa5b_         352 WTISNITAGNTEQIQAVIDAN  372 (503)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHHHHhhccHHHHHHHHHcc
Confidence            4443    3444444444433

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=6.4e-23  Score=207.83  Aligned_cols=286  Identities=16%  Similarity=0.166  Sum_probs=240.7

Q ss_pred             hhhhhhcCCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050          120 SQFRDSGNGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI  198 (408)
Q Consensus       120 ~~~l~~ls~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v  198 (408)
                      ...+.+++...++...+++.||+|.|+.+|++++++++..|+++|+||+. .+..+..+.+.|++|+|+.+|.+ .++.+
T Consensus        81 ~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~~  159 (529)
T d1jdha_          81 AGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-TNVKF  159 (529)
T ss_dssp             HHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGC-CCHHH
T ss_pred             HHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHc-cChHH
Confidence            34566777777888999999999999999999999999999999999998 66778888899999999999984 78999


Q ss_pred             HHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCC
Q 041050          199 RRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      +..++++|.+++..++..+..+...|+++.|+.++...+++.++..+++++.|++.+++++..+++.|+++.|+.++.++
T Consensus       160 ~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~  239 (529)
T d1jdha_         160 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP  239 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhccc
Confidence            99999999999987788899999999999999999888888999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccch---------------------hhhhHHHhhhhhc-cCChhhHHHHHhcCcHHHHHHhcc-
Q 041050          279 HPDVLSQVARGIANFAKCES---------------------RAATQVRFIRCTA-TGVKSGRSLLIEDGALPWIVQNAN-  335 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~---------------------~~~~~~~~~i~~~-~~~~~~~~~i~~~g~l~~Lv~lL~-  335 (408)
                      +++++..+++++++++....                     +......++++++ .+++..+..+.+.|+++.|+..+. 
T Consensus       240 ~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~  319 (529)
T d1jdha_         240 SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLR  319 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             chhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHh
Confidence            99999999999999975211                     1112222345665 367788888999999999999884 


Q ss_pred             -CCCHHHHHHHHHHHHHHccCchh----HHHHHhCCcHHHHHHHHhcCCHHHHHHHHH---HHHhccHhhHHHHHhhhh
Q 041050          336 -NEAAPIRRHIELALCHLAQHEVN----AREMISGGALWELVRISRDCSREDIRSLAH---RTLSSSLTFRAEMRRLRI  406 (408)
Q Consensus       336 -~~~~~v~~~a~~aL~~La~~~~~----~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~---~~L~~~~~~~~~~~~~~~  406 (408)
                       ++.++++..++++|++++.+...    ...+...|+++.|+.++..++...+...+.   +.+..++.....+++.|+
T Consensus       320 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~  398 (529)
T d1jdha_         320 AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGA  398 (529)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTH
T ss_pred             hhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhccc
Confidence             56788999999999999977432    344558999999999998766655444443   667778888888887765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-22  Score=205.39  Aligned_cols=231  Identities=18%  Similarity=0.246  Sum_probs=206.5

Q ss_pred             HHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHh-CCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh
Q 041050          136 LFEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEA-GGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE  214 (408)
Q Consensus       136 l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~-g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~  214 (408)
                      -+..+.+|.|+++|++++..++..|+.+|++++..+..+..++.. |+++.|+.+|....++++++.|+++|++|+.+ +
T Consensus        13 ~~~~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~-~   91 (529)
T d1jdha_          13 ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-R   91 (529)
T ss_dssp             ----CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-H
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-c
Confidence            344577999999999999999999999999999988888888775 45899999998767889999999999999998 9


Q ss_pred             hhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          215 ANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       215 ~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                      +++..+++.||+|.|+.+| ++++++++..++++|+||| .++..+..+.+.|+++.|+.+++++++.++..++++|.++
T Consensus        92 ~~~~~i~~~g~i~~Li~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l  170 (529)
T d1jdha_          92 EGLLAIFKSGGIPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  170 (529)
T ss_dssp             HHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCCHHHHHHHh-CCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHH
Confidence            9999999999999999998 5688999999999999999 6677888889999999999999999999999999999999


Q ss_pred             hccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHH
Q 041050          294 AKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQHEVNAREMISGGALWELV  372 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~  372 (408)
                      +.                 ++++.+..+.+.|+++.|+.++.+ ....++..+++++.+++.++++...+++.|+++.|.
T Consensus       171 ~~-----------------~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~  233 (529)
T d1jdha_         171 AY-----------------GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG  233 (529)
T ss_dssp             HT-----------------TCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred             hh-----------------hhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHH
Confidence            97                 778888889999999999999964 467899999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHH
Q 041050          373 RISRDCSREDIRS  385 (408)
Q Consensus       373 ~ll~~~~~~~~~~  385 (408)
                      .++.+.+.+....
T Consensus       234 ~ll~~~~~~~~~~  246 (529)
T d1jdha_         234 LHLTDPSQRLVQN  246 (529)
T ss_dssp             TTTTSSCHHHHHH
T ss_pred             HHhcccchhhhhh
Confidence            9998776655433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6e-22  Score=194.41  Aligned_cols=252  Identities=16%  Similarity=0.243  Sum_probs=214.2

Q ss_pred             hhhhhc-CCCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcC------
Q 041050          121 QFRDSG-NGQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRS------  192 (408)
Q Consensus       121 ~~l~~l-s~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~------  192 (408)
                      ..+.++ ++.......+++.|++|.++.+|.+++.+++..|+++|+|++. ++..+..+.+.|+++.|+.++..      
T Consensus        79 ~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~  158 (434)
T d1q1sc_          79 WALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL  158 (434)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGS
T ss_pred             HHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccc
Confidence            345666 4455677889999999999999999999999999999999998 66778888888888777665531      


Q ss_pred             ----------------------------------------CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHH
Q 041050          193 ----------------------------------------FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTT  232 (408)
Q Consensus       193 ----------------------------------------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~l  232 (408)
                                                              +++++++..++++|++++.+++.....+...|+++.|+.+
T Consensus       159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~l  238 (434)
T d1q1sc_         159 ACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL  238 (434)
T ss_dssp             CHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccc
Confidence                                                    2456788889999999998866777888899999999999


Q ss_pred             hhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhc
Q 041050          233 AADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTA  311 (408)
Q Consensus       233 L~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~  311 (408)
                      + .++++.++..++++|.|++ .++..+..+.+.|+++.++.++.+++++++..++++|.|++.                
T Consensus       239 l-~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~----------------  301 (434)
T d1q1sc_         239 L-GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA----------------  301 (434)
T ss_dssp             H-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTT----------------
T ss_pred             c-ccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhcc----------------
Confidence            8 5678999999999999998 677788899999999999999999999999999999999997                


Q ss_pred             cCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHH
Q 041050          312 TGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRISRDCSREDIRSLAHR  389 (408)
Q Consensus       312 ~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~  389 (408)
                       .+++....+.+.|+++.++.++.+++++++..|+++|++++.+  .+....+++.|+++.|++++.+.+.+ +...+.+
T Consensus       302 -~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~-~~~~~l~  379 (434)
T d1q1sc_         302 -GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK-IIQVILD  379 (434)
T ss_dssp             -SCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHH-HHHHHHH
T ss_pred             -ccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHH-HHHHHHH
Confidence             7788888889999999999999999999999999999999875  34567788999999999999866554 4444544


Q ss_pred             HH
Q 041050          390 TL  391 (408)
Q Consensus       390 ~L  391 (408)
                      ++
T Consensus       380 ~l  381 (434)
T d1q1sc_         380 AI  381 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7e-22  Score=199.01  Aligned_cols=253  Identities=15%  Similarity=0.198  Sum_probs=218.6

Q ss_pred             hhhhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHH
Q 041050          120 SQFRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDET  197 (408)
Q Consensus       120 ~~~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~  197 (408)
                      ...+.+++ +.......++..|+++.++.+|.+++.+++..|+++|+||+. ++..+..+++.|++++|+.++.+ .++.
T Consensus       141 ~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~-~~~~  219 (503)
T d1wa5b_         141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPS  219 (503)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhccc-CCHH
Confidence            45566664 445566778888999999999999999999999999999998 68999999999999999999984 6788


Q ss_pred             HHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhc
Q 041050          198 IRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVR  276 (408)
Q Consensus       198 v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~  276 (408)
                      +++.++|+|+|++.+.+.........+++|.|+.++ .+.+++++..++++|.+++ .++.....+.+.|+++.++.++.
T Consensus       220 ~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~  298 (503)
T d1wa5b_         220 LIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS  298 (503)
T ss_dssp             HHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhccc
Confidence            999999999999987455555566778999999998 5688999999999999999 56677788899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050          277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-  355 (408)
Q Consensus       277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-  355 (408)
                      ++++.++..+++++.|++.                 +++.....+.+.|+++.|..++.++++.++..++|+|+|++.+ 
T Consensus       299 ~~~~~v~~~al~~l~nl~~-----------------~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~  361 (503)
T d1wa5b_         299 HESTLVQTPALRAVGNIVT-----------------GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN  361 (503)
T ss_dssp             CSCHHHHHHHHHHHHHHTT-----------------SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             CCchhhhhhHHHHHHHHHH-----------------HHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999997                 7777888889999999999999999999999999999999886 


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHh
Q 041050          356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  392 (408)
                      ++....+++.|+++.++.++.+.+.+ ++..|.+++.
T Consensus       362 ~~~~~~i~~~~~l~~li~~l~~~~~~-v~~~a~~~l~  397 (503)
T d1wa5b_         362 TEQIQAVIDANLIPPLVKLLEVAEYK-TKKEACWAIS  397 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHSCHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHccccchhHHhcccCChh-HHHHHHHHHH
Confidence            45567777999999999999977665 4444554443

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=187.99  Aligned_cols=194  Identities=19%  Similarity=0.180  Sum_probs=177.8

Q ss_pred             CCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHH
Q 041050          151 SEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLS  230 (408)
Q Consensus       151 s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv  230 (408)
                      +.+.+.+..|+.+|.+|+.+.+++..++..||+++|+..+-++++++++..|+++|++++.+++..+..+++.|++|.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            45678899999999999999999999999999999987544367899999999999999998799999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhh
Q 041050          231 TTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRC  309 (408)
Q Consensus       231 ~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~  309 (408)
                      .++.+..++.++..++++|.+++ .++.++..+...||++.|+.+++++++.++..++++|+||+.              
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~--------------  173 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLV--------------  173 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH--------------
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHh--------------
Confidence            99987888999999999999999 778888999999999999999999999999999999999997              


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHH
Q 041050          310 TATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNARE  361 (408)
Q Consensus       310 ~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~  361 (408)
                         ++++.+..+.+.|++|.|+.++++++++++..|+++|++|+.+.+....
T Consensus       174 ---~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~  222 (264)
T d1xqra1         174 ---GHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVR  222 (264)
T ss_dssp             ---HCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ---ccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               7888889999999999999999999999999999999999998655433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-20  Score=181.68  Aligned_cols=263  Identities=19%  Similarity=0.237  Sum_probs=199.6

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      .||.|+++|++++++++..|+++|+||+. +++++..+++.||||+|+.+|+ ++++.++..|+++|+||+.++++++..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            58999999999999999999999999998 7899999999999999999998 478999999999999999776999999


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhh---------------cCCCHHHHH
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMV---------------RCGHPDVLS  284 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL---------------~~~~~~v~~  284 (408)
                      +.+.||++.|+.++.+..++.++..+++++++++.++..+......|+.+.+..++               ...++.++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            99999999999999888899999999999999997777766666655444333322               234667777


Q ss_pred             HHHHHHHHhhccchhhh------------h----------------------------------------H---------
Q 041050          285 QVARGIANFAKCESRAA------------T----------------------------------------Q---------  303 (408)
Q Consensus       285 ~a~~aL~nL~~~~~~~~------------~----------------------------------------~---------  303 (408)
                      .+++++.+++.++.+..            .                                        .         
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            77777776654211000            0                                        0         


Q ss_pred             ----------------------------------------------H----------------HhhhhhccCCh------
Q 041050          304 ----------------------------------------------V----------------RFIRCTATGVK------  315 (408)
Q Consensus       304 ----------------------------------------------~----------------~~~i~~~~~~~------  315 (408)
                                                                    +                .++++.++...      
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                          0                00011111111      


Q ss_pred             hhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcC-----CHHHHHHHHHHH
Q 041050          316 SGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDC-----SREDIRSLAHRT  390 (408)
Q Consensus       316 ~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~-----~~~~~~~~A~~~  390 (408)
                      ..+..+.+.|+++.|+.++.+++++++..+++++++++.++.++..+.+ ++++.|+.++...     ..++++..|..+
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~  400 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYT  400 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHH
Confidence            1234445679999999999999999999999999999999888766655 6789999988643     244566666544


Q ss_pred             H----hccHhhHHHHHhhh
Q 041050          391 L----SSSLTFRAEMRRLR  405 (408)
Q Consensus       391 L----~~~~~~~~~~~~~~  405 (408)
                      |    ..++..+..+.+.|
T Consensus       401 L~~l~~~~~~~~~~l~~~g  419 (457)
T d1xm9a1         401 VRNLMASQPQLAKQYFSSS  419 (457)
T ss_dssp             HHHHHTTCTHHHHHHCCHH
T ss_pred             HHHHhcCCHHHHHHHHHCC
Confidence            3    34666666666554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-20  Score=174.99  Aligned_cols=173  Identities=23%  Similarity=0.256  Sum_probs=158.2

Q ss_pred             hhhhcCCCCchHHHHHHhcCHHHHHH-hhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHH
Q 041050          122 FRDSGNGQKAPITKLFEQVGLHKILS-LLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIR  199 (408)
Q Consensus       122 ~l~~ls~~~~~~~~l~~~~~v~~Ll~-lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~  199 (408)
                      .+..+....++.+.+...||++.++. +++++++++|..|+++|++++. ++..+..+++.|++|.|+.++.++.++.++
T Consensus        40 ~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~  119 (264)
T d1xqra1          40 LLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVR  119 (264)
T ss_dssp             HHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHH
T ss_pred             HHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHH
Confidence            34445445567789999999999985 7889999999999999999998 788899999999999999999866789999


Q ss_pred             HHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCC
Q 041050          200 RVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       200 ~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~  278 (408)
                      ..|+++|++++.+++.++..+...||++.|+.++ .+.++.++..++++|+|++ .++..+..+.+.|+++.|+.+++++
T Consensus       120 ~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~  198 (264)
T d1xqra1         120 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAM-QQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE  198 (264)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHH-hcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCC
Confidence            9999999999998899999999999999999998 5678999999999999998 7899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhc
Q 041050          279 HPDVLSQVARGIANFAK  295 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~  295 (408)
                      +++++..|+++|.+|+.
T Consensus       199 ~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         199 HSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             CSTHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHh
Confidence            99999999999999997

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-20  Score=181.47  Aligned_cols=255  Identities=19%  Similarity=0.256  Sum_probs=199.8

Q ss_pred             hhhhhcC-CCCchHHHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHH
Q 041050          121 QFRDSGN-GQKAPITKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETI  198 (408)
Q Consensus       121 ~~l~~ls-~~~~~~~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v  198 (408)
                      ..+.++. +.+++...+++.||+|.|+++|+++++++|..|+++|.||+. +++++..+.+.||++.|+.++....++.+
T Consensus        24 ~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~v~~li~~l~~~~~~~~  103 (457)
T d1xm9a1          24 YYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEI  103 (457)
T ss_dssp             HHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCChHHHHHHHhccCcHHH
Confidence            3455664 467788999999999999999999999999999999999996 88999999999999999999987778888


Q ss_pred             HHHHHHHHHHhccCC-------------------------------------------------------hhhHHHHH-h
Q 041050          199 RRVAAGAIANLAMNA-------------------------------------------------------EANQELIM-A  222 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~-------------------------------------------------------~~~~~~i~-~  222 (408)
                      +..|+++|++++.+.                                                       +.++..++ .
T Consensus       104 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~  183 (457)
T d1xm9a1         104 QKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY  183 (457)
T ss_dssp             HHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            888999998887652                                                       11111111 2


Q ss_pred             cCcHHHHHHHh---------------------------------------------------------------------
Q 041050          223 QGGISLLSTTA---------------------------------------------------------------------  233 (408)
Q Consensus       223 ~g~i~~Lv~lL---------------------------------------------------------------------  233 (408)
                      .|+++.|+.++                                                                     
T Consensus       184 ~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (457)
T d1xm9a1         184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYD  263 (457)
T ss_dssp             TTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--------------------------
T ss_pred             hccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHh
Confidence            33444444322                                                                     


Q ss_pred             -----------------------------hcCCCHHHHHHHHHHHHHHhCCch------hHHHHHhcccHHHHHHhhcCC
Q 041050          234 -----------------------------ADAEDPQTLRMVAGAIANLCGNDK------LQMKLRSEGGIRALLGMVRCG  278 (408)
Q Consensus       234 -----------------------------~~~~~~~v~~~a~~aL~nL~~~~~------~~~~i~~~g~l~~L~~lL~~~  278 (408)
                                                   ..+.++.+...+.+++.+++.+..      .+..+.+.|+++.|+.++.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~  343 (457)
T d1xm9a1         264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG  343 (457)
T ss_dssp             --CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS
T ss_pred             hhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc
Confidence                                         223355666677888888874332      345556789999999999999


Q ss_pred             CHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCC------CHHHHHHHHHHHHHH
Q 041050          279 HPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNE------AAPIRRHIELALCHL  352 (408)
Q Consensus       279 ~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~------~~~v~~~a~~aL~~L  352 (408)
                      ++.++..+++++.||+.                  ++..+..+.+ ++++.++.++...      +.+++..|+.+|+++
T Consensus       344 ~~~v~~~a~~~l~~La~------------------~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l  404 (457)
T d1xm9a1         344 NSDVVRSGASLLSNMSR------------------HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNL  404 (457)
T ss_dssp             CHHHHHHHHHHHHHHHT------------------SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhh------------------ChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHHHHH
Confidence            99999999999999994                  5666666654 6789999988642      457999999999999


Q ss_pred             ccC-chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhcc
Q 041050          353 AQH-EVNAREMISGGALWELVRISRDCSREDIRSLAHRTLSSS  394 (408)
Q Consensus       353 a~~-~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~~  394 (408)
                      +.+ +++++.+.+.|+++.|+.++.+.+...++.+|..+|...
T Consensus       405 ~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L  447 (457)
T d1xm9a1         405 MASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM  447 (457)
T ss_dssp             HTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            976 667788889999999999999887778777888777554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=6.6e-07  Score=80.11  Aligned_cols=216  Identities=10%  Similarity=0.047  Sum_probs=135.8

Q ss_pred             HHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhh
Q 041050          137 FEQVGLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEAN  216 (408)
Q Consensus       137 ~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~  216 (408)
                      .+....+.|+++|+++++.+|..|+.+|+.+..          ..+++.|+.++. ++++.++..|+.+|..+... ...
T Consensus        16 ~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~-d~~~~vr~~a~~aL~~l~~~-~~~   83 (276)
T d1oyza_          16 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS-DKNYIRRDIGAFILGQIKIC-KKC   83 (276)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT-CSSHHHHHHHHHHHHHSCCC-TTT
T ss_pred             cccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhccc-ccc
Confidence            344567889999999999999999999988753          235899999998 57899999999999999766 444


Q ss_pred             HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          217 QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       217 ~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      ...+     ++.|...+.+++++.++..++.+|.+++. ++....     ..++.+...+.++++.++..++.++.....
T Consensus        84 ~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~  153 (276)
T d1oyza_          84 EDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND  153 (276)
T ss_dssp             HHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             ccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH-----HHHHHHHHHhcCcchHHHHHHHHHHhhcch
Confidence            3333     44556655577899999999999999983 332222     235567777788889999888888877642


Q ss_pred             cchhhhhHHHhhhhhccCChhhHHHH------H---hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCC
Q 041050          296 CESRAATQVRFIRCTATGVKSGRSLL------I---EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGG  366 (408)
Q Consensus       296 ~~~~~~~~~~~~i~~~~~~~~~~~~i------~---~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g  366 (408)
                        ......+......  .+...+...      .   ....++.++..+...+..++..+..++..+..          ..
T Consensus       154 --~~~~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~----------~~  219 (276)
T d1oyza_         154 --KATIPLLINLLKD--PNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD----------KR  219 (276)
T ss_dssp             ---CCHHHHHHHHTC--SSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC----------GG
T ss_pred             --HHHHHHHHHhccc--ccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhh----------hh
Confidence              1110000000000  011100000      0   01224445556666666666666666655432          33


Q ss_pred             cHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          367 ALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       367 ~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      +++.|++.+.++   +++..|.++|
T Consensus       220 ~~~~L~~~l~d~---~vr~~a~~aL  241 (276)
T d1oyza_         220 VLSVLCDELKKN---TVYDDIIEAA  241 (276)
T ss_dssp             GHHHHHHHHTSS---SCCHHHHHHH
T ss_pred             hHHHHHHHhCCh---HHHHHHHHHH
Confidence            577888877643   2444444443

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=4.6e-07  Score=81.17  Aligned_cols=217  Identities=13%  Similarity=0.036  Sum_probs=140.5

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.++.+++++++.+|..|+.+|+.+.........+     ++.+...+-+++++.++..|+.+|.+++...+..... 
T Consensus        51 ~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-  124 (276)
T d1oyza_          51 AVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-  124 (276)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-
Confidence            4799999999999999999999999987644333222     4445555444678999999999999987763332222 


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                          .++.+...+ .++++.++..++.++..+.          +...++.+..++...+..++..+..++.++.......
T Consensus       125 ----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (276)
T d1oyza_         125 ----IVEQSQITA-FDKSTNVRRATAFAISVIN----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI  189 (276)
T ss_dssp             ----HHHHHHHHT-TCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH
T ss_pred             ----HHHHHHHHh-cCcchHHHHHHHHHHhhcc----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhcccccc
Confidence                345666665 5678888888887776543          2345566667777777777776666666654321111


Q ss_pred             hhHHHhhhhhccCChhhHH-------HHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHH
Q 041050          301 ATQVRFIRCTATGVKSGRS-------LLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVR  373 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~-------~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~  373 (408)
                      ...+.....  ..+...+.       .+....+++.|++.+.++  ++|..++++|+.+..          .++++.|..
T Consensus       190 ~~~~~~~~~--~~~~~~~~~~~~al~~~~~~~~~~~L~~~l~d~--~vr~~a~~aL~~ig~----------~~~~~~L~~  255 (276)
T d1oyza_         190 RDCFVEMLQ--DKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN--TVYDDIIEAAGELGD----------KTLLPVLDT  255 (276)
T ss_dssp             HHHHHHHTT--CSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSS--SCCHHHHHHHHHHCC----------GGGHHHHHH
T ss_pred             chhhhhhhh--hhhhhhhhhhccccchhhhhhhHHHHHHHhCCh--HHHHHHHHHHHHcCC----------HHHHHHHHH
Confidence            111000000  01111111       111345788999988754  589999999998863          247899999


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 041050          374 ISRDCSREDIRSLAHRTLS  392 (408)
Q Consensus       374 ll~~~~~~~~~~~A~~~L~  392 (408)
                      ++...++.+++..|...|.
T Consensus       256 ~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         256 MLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHTTSSCCHHHHHHHHHHT
T ss_pred             HHccCCCHHHHHHHHHHHc
Confidence            8887666678888887765

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=8.1e-06  Score=81.32  Aligned_cols=206  Identities=13%  Similarity=0.042  Sum_probs=142.5

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC--CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA--EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      +|.+..+.+++....|..|+..+..+..  ++..+..     .++.+..++. ++++.+|+.|+.++..++.. -..  .
T Consensus       128 ~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~-----l~~~~~~l~~-D~~~~VR~~a~~~l~~~~~~-~~~--~  198 (588)
T d1b3ua_         128 VPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE-----LRQYFRNLCS-DDTPMVRRAAASKLGEFAKV-LEL--D  198 (588)
T ss_dssp             HHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH-----HHHHHHHHHT-CSCHHHHHHHHHHHHHHHHT-SCH--H
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH-----HHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH-hcH--H
Confidence            3434456667777888888888887765  3333333     2566777777 57899999999999999875 111  1


Q ss_pred             HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccc
Q 041050          220 IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCE  297 (408)
Q Consensus       220 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~  297 (408)
                      ......++.+..++ +++++.++..++.++..++.  .++.    .....++.+..++.++++.|+..++.++.+++.. 
T Consensus       199 ~~~~~l~~~l~~l~-~d~~~~vr~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~-  272 (588)
T d1b3ua_         199 NVKSEIIPMFSNLA-SDEQDSVRLLAVEACVNIAQLLPQED----LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA-  272 (588)
T ss_dssp             HHHHTHHHHHHHHH-TCSCHHHHTTHHHHHHHHHHHSCHHH----HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH-
T ss_pred             HHHHHHHHHHHHHh-cCCchhhHHHHHHHHHHhhccCCHHH----HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHH-
Confidence            22234466677765 67888999999999999872  2221    1223577788888889999999999999998740 


Q ss_pred             hhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC--chhHHHHHhCCcHHHHHHHH
Q 041050          298 SRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH--EVNAREMISGGALWELVRIS  375 (408)
Q Consensus       298 ~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~--~~~~~~l~~~g~i~~L~~ll  375 (408)
                                         .........++|.+..++.+.++++|..++.++..++..  ........-...++.+..++
T Consensus       273 -------------------~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~  333 (588)
T d1b3ua_         273 -------------------VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV  333 (588)
T ss_dssp             -------------------HCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH
T ss_pred             -------------------hhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh
Confidence                               001123346789999999999999999999999998865  33333333345677777777


Q ss_pred             hcCCHH
Q 041050          376 RDCSRE  381 (408)
Q Consensus       376 ~~~~~~  381 (408)
                      .+.+..
T Consensus       334 ~d~~~~  339 (588)
T d1b3ua_         334 SDANQH  339 (588)
T ss_dssp             TCSCHH
T ss_pred             cCCChH
Confidence            755443

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=6.1e-06  Score=79.76  Aligned_cols=206  Identities=10%  Similarity=0.085  Sum_probs=143.2

Q ss_pred             hhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhC--CHHHHHHHHcC----------------CCCHHHHHHHHHHHHHh
Q 041050          148 LLESEDANVRIHAVKVVANLAAEEANQEKIVEAG--GLSSLLMLLRS----------------FEDETIRRVAAGAIANL  209 (408)
Q Consensus       148 lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~L~~lL~~----------------~~~~~v~~~A~~aL~nL  209 (408)
                      +.++.+.+.+..++..|..+...++.|..+....  .+++|+.+|..                ....+++..++-++|-|
T Consensus       173 l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL  252 (477)
T d1ho8a_         173 LQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL  252 (477)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH
T ss_pred             hhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH
Confidence            3357888999999999999999999998886533  37777777642                12357888999999999


Q ss_pred             ccCChhhHHHHHhcC--cHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCc--hh----HHHHHhcccHHHHHHhhc--CCC
Q 041050          210 AMNAEANQELIMAQG--GISLLSTTAADAEDPQTLRMVAGAIANLCGND--KL----QMKLRSEGGIRALLGMVR--CGH  279 (408)
Q Consensus       210 a~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~--~~----~~~i~~~g~l~~L~~lL~--~~~  279 (408)
                      +.+ +.....+.+.+  .++.|+.++..+.-+.+.|.++.++.|++..+  .+    ...++..++++.+-.+..  -.|
T Consensus       253 SF~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~D  331 (477)
T d1ho8a_         253 TFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSD  331 (477)
T ss_dssp             TTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSS
T ss_pred             HcC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCC
Confidence            998 88888888764  48899999988888999999999999998432  11    233455566665444432  356


Q ss_pred             HHHHH-------------------------------------------------------HHHHHHHHhhcc-----c-h
Q 041050          280 PDVLS-------------------------------------------------------QVARGIANFAKC-----E-S  298 (408)
Q Consensus       280 ~~v~~-------------------------------------------------------~a~~aL~nL~~~-----~-~  298 (408)
                      +++..                                                       .....|..+-..     + .
T Consensus       332 edl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         332 EELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            77654                                                       222233332210     0 0


Q ss_pred             hhhhHHHhh-----hhhcc-CChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          299 RAATQVRFI-----RCTAT-GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       299 ~~~~~~~~~-----i~~~~-~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      .......-|     ||.|+ .+|.++..+.+.|+=..+++++.+++++||.+|..++..+..
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            000000001     22221 567889999999999999999999999999999999987643

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.1e-06  Score=84.46  Aligned_cols=217  Identities=13%  Similarity=0.062  Sum_probs=132.9

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHH
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIM  221 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~  221 (408)
                      +|.+..++++++++++..++..+..+...-. ...+. ...+|.+..++. +.+..+|..++.++..++.. -.  ..+.
T Consensus       365 ~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~-~~~~~-~~ll~~l~~~~~-d~~~~~r~~~~~~l~~l~~~-~~--~~~~  438 (588)
T d1b3ua_         365 LPLFLAQLKDECPEVRLNIISNLDCVNEVIG-IRQLS-QSLLPAIVELAE-DAKWRVRLAIIEYMPLLAGQ-LG--VEFF  438 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHTTCHHHHHHSC-HHHHH-HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHH-HC--GGGC
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHHhhcc-hhhhh-hHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHH-cC--hHhH
Confidence            5566667777777777777776665543110 01111 123566777776 35677777777777766542 00  0011


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESR  299 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~  299 (408)
                      .....+.+..++ .++...++..|+.++..|+.  .++    ......++.+..++.+++..+|..++.++..+..    
T Consensus       439 ~~~l~~~l~~~l-~D~~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~----  509 (588)
T d1b3ua_         439 DEKLNSLCMAWL-VDHVYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE----  509 (588)
T ss_dssp             CHHHHHHHHHGG-GCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHHHHHhhc-cCCchhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----
Confidence            111234455555 45667788888888888761  111    1122356667777777777787777777777763    


Q ss_pred             hhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC
Q 041050          300 AATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS  379 (408)
Q Consensus       300 ~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~  379 (408)
                                      ..........++|.+.+++.++.+.||..++.+|..+...-+..  .......+.|.++.. ..
T Consensus       510 ----------------~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~L~~-D~  570 (588)
T d1b3ua_         510 ----------------VCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS--TLQSEVKPILEKLTQ-DQ  570 (588)
T ss_dssp             ----------------HHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH--HHHHHHHHHHHHHTT-CS
T ss_pred             ----------------HcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH--hHHHHHHHHHHHHcC-CC
Confidence                            01111233468999999999999999999999999998764332  122334566666665 45


Q ss_pred             HHHHHHHHHHHHh
Q 041050          380 REDIRSLAHRTLS  392 (408)
Q Consensus       380 ~~~~~~~A~~~L~  392 (408)
                      +.+++..|.+++.
T Consensus       571 d~dVr~~A~~al~  583 (588)
T d1b3ua_         571 DVDVKYFAQEALT  583 (588)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            6677777776654

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=4.6e-08  Score=76.79  Aligned_cols=107  Identities=18%  Similarity=0.121  Sum_probs=86.2

Q ss_pred             CCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHH
Q 041050          193 FEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALL  272 (408)
Q Consensus       193 ~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~  272 (408)
                      ++++.+|..|+++|+.+..            .+++.|+..| .++++.++..++++|+++..          .+.++.|.
T Consensus         3 D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l-~d~~~~vR~~a~~~L~~~~~----------~~~~~~L~   59 (111)
T d1te4a_           3 DENKWVRRDVSTALSRMGD------------EAFEPLLESL-SNEDWRIRGAAAWIIGNFQD----------ERAVEPLI   59 (111)
T ss_dssp             SSCCCSSSSCCSSTTSCSS------------TTHHHHHHGG-GCSCHHHHHHHHHHHGGGCS----------HHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHhCH------------HHHHHHHHHH-cCCCHHHHHHHHHHHHhcch----------hhhHHHHH
Confidence            3566778878887776543            2678899988 57889999999999987642          24578899


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHH
Q 041050          273 GMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALC  350 (408)
Q Consensus       273 ~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~  350 (408)
                      .++.++++.|+..|+++|..+..                            .++++.|..++.++++.+|..|..+|-
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------------------------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------------------------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------------------------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------------------------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999998852                            246788889999999999999988763

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.24  E-value=6.9e-08  Score=75.69  Aligned_cols=109  Identities=18%  Similarity=0.143  Sum_probs=86.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHH
Q 041050          149 LESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISL  228 (408)
Q Consensus       149 L~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~  228 (408)
                      |+++++.+|..|+++|+.+.           ..+++.|+..|. ++++.+|..|+++|+++...           +.++.
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~-d~~~~vR~~a~~~L~~~~~~-----------~~~~~   57 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLS-NEDWRIRGAAAWIIGNFQDE-----------RAVEP   57 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGG-CSCHHHHHHHHHHHGGGCSH-----------HHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcchh-----------hhHHH
Confidence            35667777888888776642           236889999998 57899999999999877543           25788


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          229 LSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIA  291 (408)
Q Consensus       229 Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~  291 (408)
                      |+.+|. ++++.++..++.+|..+..          .+.++.|..++.++++.++..|+.+|.
T Consensus        58 L~~~l~-d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLE-DDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhc-cchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999984 6788999999999988742          345777888999999999999988763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.0003  Score=66.09  Aligned_cols=188  Identities=10%  Similarity=0.087  Sum_probs=118.0

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHH-HHHHHcCCCCHHHHHHHHHHHHHhccCChhhHH-
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSS-LLMLLRSFEDETIRRVAAGAIANLAMNAEANQE-  218 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~-L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~-  218 (408)
                      .+.+..++.+++++++..++.+|..++. .+..-...+.. .+.. +...+. ++++.++..|+.++..++.. ..... 
T Consensus       218 ~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~a~~~l~~i~~~-~~~~~~  294 (458)
T d1ibrb_         218 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMK-SDIDEVALQGIEFWSNVCDE-EMDLAI  294 (458)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHH-CSSHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            3445566778999999999999999875 33221111111 2333 344455 56788999899888888653 21110 


Q ss_pred             --------------------HHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHH
Q 041050          219 --------------------LIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRA  270 (408)
Q Consensus       219 --------------------~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~  270 (408)
                                          ...-...++.+...+..      ..+..++..+..++..++.  .+....     ..++.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~-----~l~~~  369 (458)
T d1ibrb_         295 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPF  369 (458)
T ss_dssp             HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHH
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhh-----HHHHH
Confidence                                00111123444444321      1223477778788877762  222212     24566


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhhc-cchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050          271 LLGMVRCGHPDVLSQVARGIANFAK-CESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       271 L~~lL~~~~~~v~~~a~~aL~nL~~-~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                      +...+.++++.++..++.+|+.++. |..+..                 ..+ -..++|.+++.++++++.||..|+++|
T Consensus       370 i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~-----------------~~~-l~~i~~~l~~~l~d~~~~VR~~a~~~l  431 (458)
T d1ibrb_         370 IKEHIKNPDWRYRDAAVMAFGCILEGPEPSQL-----------------KPL-VIQAMPTLIELMKDPSVVVRDTAAWTV  431 (458)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTT-----------------CTT-TTTHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHH-----------------HHH-HHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            7778889999999999999999984 111110                 011 135889999999999999999999999


Q ss_pred             HHHccC
Q 041050          350 CHLAQH  355 (408)
Q Consensus       350 ~~La~~  355 (408)
                      +.++..
T Consensus       432 ~~i~~~  437 (458)
T d1ibrb_         432 GRICEL  437 (458)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00098  Score=62.40  Aligned_cols=227  Identities=14%  Similarity=0.085  Sum_probs=136.7

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHcCC-chhH-HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          142 LHKILSLLES--EDANVRIHAVKVVANLAAE-EANQ-EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       142 v~~Ll~lL~s--~~~~v~~~A~~aL~nLa~~-~~~~-~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ++.++..+.+  .+.+++..|+.++.++... .... .........+.+..++. +++++++..+..++..++...+..-
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~i~~~~~~~~  251 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYM  251 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCGGGC
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            5666677764  4678999999999988762 2221 11122223455666666 5789999999999999876533322


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhH---------------------HHHHhcccHHHHHHhhc
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQ---------------------MKLRSEGGIRALLGMVR  276 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~---------------------~~i~~~g~l~~L~~lL~  276 (408)
                      ...+.....+.+...+ .+.++.++..++.++..++......                     ....-...++.+...+.
T Consensus       252 ~~~l~~~~~~~~~~~~-~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  330 (458)
T d1ibrb_         252 ETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  330 (458)
T ss_dssp             TTTTTTTHHHHHHHHH-HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence            1112222223334443 6678889888998888886321110                     00011122344444442


Q ss_pred             C-------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050          277 C-------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       277 ~-------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                      .       .+..++..+..++..++..               .|.. .    . ..+++.+.+.++++++.+|..|+.+|
T Consensus       331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~---------------~~~~-~----~-~~l~~~i~~~l~s~~~~~r~aal~~l  389 (458)
T d1ibrb_         331 KQDENDDDDDWNPCKAAGVCLMLLATC---------------CEDD-I----V-PHVLPFIKEHIKNPDWRYRDAAVMAF  389 (458)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHH---------------TTTT-H----H-HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             cchhhhccccccHHHHHHHHHHHHHHh---------------ccHh-h----h-hHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            1       2234677777777777641               1111 1    1 13567788888999999999999999


Q ss_pred             HHHccCc--hhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 041050          350 CHLAQHE--VNAREMISGGALWELVRISRDCSREDIRSLAHRTLSS  393 (408)
Q Consensus       350 ~~La~~~--~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  393 (408)
                      +.++.+.  ...... -...++.|+..+.+++ ..+|..|.++|..
T Consensus       390 ~~i~~~~~~~~~~~~-l~~i~~~l~~~l~d~~-~~VR~~a~~~l~~  433 (458)
T d1ibrb_         390 GCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGR  433 (458)
T ss_dssp             HHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred             HHHHHhcCHhHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Confidence            9999652  221111 2457888999888654 4577777777653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.50  E-value=0.00054  Score=65.83  Aligned_cols=142  Identities=11%  Similarity=0.138  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHHcCCchhHHHHHHhC--CHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-----hhHHHHHhcC--
Q 041050          154 ANVRIHAVKVVANLAAEEANQEKIVEAG--GLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-----ANQELIMAQG--  224 (408)
Q Consensus       154 ~~v~~~A~~aL~nLa~~~~~~~~i~~~g--~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-----~~~~~i~~~g--  224 (408)
                      ..++.+++-+++-|++++.....+.+..  -++.|+.+++.+.-+.+.+.++.++.|+.....     .....++..+  
T Consensus       239 ~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l  318 (477)
T d1ho8a_         239 IQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL  318 (477)
T ss_dssp             HHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh
Confidence            5788999999999999998888888764  389999999877789999999999999976421     1122223333  


Q ss_pred             --------------------------------------------------------------------------cHHHHH
Q 041050          225 --------------------------------------------------------------------------GISLLS  230 (408)
Q Consensus       225 --------------------------------------------------------------------------~i~~Lv  230 (408)
                                                                                                .+..|+
T Consensus       319 ~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~  398 (477)
T d1ho8a_         319 PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLI  398 (477)
T ss_dssp             HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHH
Confidence                                                                                      234455


Q ss_pred             HHhhc---------CCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhc
Q 041050          231 TTAAD---------AEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAK  295 (408)
Q Consensus       231 ~lL~~---------~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~  295 (408)
                      .+|.+         +.||.+...||.=|+.++ ..|..+..+-+.|+=..++.++.++|++|+.+|+.|+.-+..
T Consensus       399 ~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         399 ELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            55531         346777778888888888 788999999899998889999999999999999999988753

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00018  Score=77.22  Aligned_cols=173  Identities=13%  Similarity=0.117  Sum_probs=110.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCC--hhhHHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNA--EANQELI  220 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~~~i  220 (408)
                      +.++..+.++++++|..|+.+|++++....       ...+|.++..+.+  ++..+...+.++..+....  ..... .
T Consensus       856 ~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~-------~~~lp~il~~l~~--~~~~~~~ll~al~ei~~~~~~~~~~~-~  925 (1207)
T d1u6gc_         856 SVILEAFSSPSEEVKSAASYALGSISVGNL-------PEYLPFVLQEITS--QPKRQYLLLHSLKEIISSASVVGLKP-Y  925 (1207)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHHHTH-------HHHHHHHHHHHHS--CGGGHHHHHHHHHHHHHSSCSTTTHH-H
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHhhH-------HHHhHHHHHHHhc--CchHHHHHHHHHHHHHHhcchhhhHH-H
Confidence            445566777888888888888877765111       0125666666664  2233444444444332210  11111 1


Q ss_pred             HhcCcHHHHHHHh---hcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhcc
Q 041050          221 MAQGGISLLSTTA---ADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKC  296 (408)
Q Consensus       221 ~~~g~i~~Lv~lL---~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~  296 (408)
                           ++.++..|   ..+.++.++..++.+++.|+ .++.        ..++.|...+.++++.++..++.++..+...
T Consensus       926 -----~~~i~~~L~~~~~~~~~~vr~~~a~~lg~L~~~~~~--------~~lp~L~~~l~~~~~~~r~~ai~~l~~~~~~  992 (1207)
T d1u6gc_         926 -----VENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE--------TLLPRLKGYLISGSSYARSSVVTAVKFTISD  992 (1207)
T ss_dssp             -----HHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG--------GTHHHHTTTSSSSCHHHHHHHHHHTGGGCCS
T ss_pred             -----HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence                 22333333   14456678989999999987 4442        4578888899999999999999999888752


Q ss_pred             chhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCc
Q 041050          297 ESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQHE  356 (408)
Q Consensus       297 ~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  356 (408)
                                       .+......+. ..++.++..+.+++.++|+.|..+|..++.+.
T Consensus       993 -----------------~~~~~~~~l~-~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~ 1034 (1207)
T d1u6gc_         993 -----------------HPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1034 (1207)
T ss_dssp             -----------------SCCTHHHHHH-HHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHC
T ss_pred             -----------------cchhhHHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC
Confidence                             1221112222 36677888899999999999999999998763

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00063  Score=72.83  Aligned_cols=205  Identities=16%  Similarity=0.154  Sum_probs=129.4

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCC-chhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChh-h--
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAE-EANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEA-N--  216 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~-~--  216 (408)
                      .++.++.+|++.+++||..|+.+|+.++.. ++.   .+. ..++.|+..+.+ ++..++..+..+|..+...-+. .  
T Consensus        46 i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~---~~~-~l~~~L~~~l~~-~~~~~r~~~~~~L~~i~~~l~~~~~~  120 (1207)
T d1u6gc_          46 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY---QVE-TIVDTLCTNMLS-DKEQLRDISSIGLKTVIGELPPASSG  120 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH---HHH-HHHHHHHHHTTC-SSSHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh---hHH-HHHHHHHHHhcC-CchhhhHHHHHHHHHHHHhccccccc
Confidence            468899999999999999999999999773 322   111 136677777663 4556777776666555321010 0  


Q ss_pred             --HHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC-Cc-hhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHH
Q 041050          217 --QELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG-ND-KLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIAN  292 (408)
Q Consensus       217 --~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~-~~-~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~n  292 (408)
                        ....+-...++.+...+.+..++.++..++.++..+.. .+ .....  ....++.++..+.++++.+++.|+.+|+.
T Consensus       121 ~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~--~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence              01111111344555666677788999999999988861 11 11111  12346667888888999999999999999


Q ss_pred             hhccchh-h-----------------------hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHH
Q 041050          293 FAKCESR-A-----------------------ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELA  348 (408)
Q Consensus       293 L~~~~~~-~-----------------------~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~a  348 (408)
                      ++..-+. .                       ..+..+++|...|..-...   -..++|.+...+.++++++|..+..+
T Consensus       199 l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~---l~~i~~~l~~~l~~~~~~~r~~al~~  275 (1207)
T d1u6gc_         199 LVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY---LEKIIPLVVKFCNVDDDELREYCIQA  275 (1207)
T ss_dssp             HTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS---CTTHHHHHHHHHSSCCTTTHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH---HHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            8763211 1                       1222233444333321100   13578888999999999999999999


Q ss_pred             HHHHccC
Q 041050          349 LCHLAQH  355 (408)
Q Consensus       349 L~~La~~  355 (408)
                      +..++..
T Consensus       276 l~~l~~~  282 (1207)
T d1u6gc_         276 FESFVRR  282 (1207)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9888754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.0014  Score=66.36  Aligned_cols=191  Identities=8%  Similarity=0.024  Sum_probs=118.1

Q ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHcCC--chh-HHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH
Q 041050          143 HKILSLLESEDANVRIHAVKVVANLAAE--EAN-QEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL  219 (408)
Q Consensus       143 ~~Ll~lL~s~~~~v~~~A~~aL~nLa~~--~~~-~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~  219 (408)
                      ..+++.+.++++.+|..++.+++.++..  +.+ +.     ..++.|+..+.+..+..++..|+.++..++...+..-..
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp-----eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~  172 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP-----ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQA  172 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH-----HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSST
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH-----HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            5566778889999999999999998752  221 11     136777777776667778888889998887542221111


Q ss_pred             HHhc--CcHHHHHHHh-hcCCCHHHHHHHHHHHHHHhCC-chhHH-HHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          220 IMAQ--GGISLLSTTA-ADAEDPQTLRMVAGAIANLCGN-DKLQM-KLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       220 i~~~--g~i~~Lv~lL-~~~~~~~v~~~a~~aL~nL~~~-~~~~~-~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      +...  ..++.++..+ ....++.++..+..++.++... +.+.. .......++.+...+.+++++++..++.++..++
T Consensus       173 ~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~  252 (861)
T d2bpta1         173 LVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM  252 (861)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            1110  1122233332 2455678999999999998732 22211 1122345677888889999999999999999998


Q ss_pred             ccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC
Q 041050          295 KCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       295 ~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~  355 (408)
                      ..                 .++........-+...+....++.++.++..+...+..++..
T Consensus       253 ~~-----------------~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         253 SK-----------------YYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HH-----------------HGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------------HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            51                 111111111111222334455667888888888777777644

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0011  Score=68.92  Aligned_cols=145  Identities=13%  Similarity=0.038  Sum_probs=93.4

Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCh-hhHHHHH
Q 041050          144 KILSLLESEDANVRIHAVKVVANLAAEE-ANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAE-ANQELIM  221 (408)
Q Consensus       144 ~Ll~lL~s~~~~v~~~A~~aL~nLa~~~-~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-~~~~~i~  221 (408)
                      .+...+.+++...|+.|+.+++.++.+. +.-...+. ..++.|+..+. ++++.+|..|+|+|+.++.... ..... .
T Consensus       399 ~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l~-d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~  475 (888)
T d1qbkb_         399 LLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDT-Y  475 (888)
T ss_dssp             HHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHTT-SSCHHHHHHHHHHHHHTHHHHHSSCHHH-H
T ss_pred             HHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhhhhhhhh-h
Confidence            3335666888999999999999998743 22111111 24677888887 5789999999999998876411 11222 2


Q ss_pred             hcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhh
Q 041050          222 AQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFA  294 (408)
Q Consensus       222 ~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~  294 (408)
                      -...++.++..+ .++++.++..+++++.+++.  .+.....+  ...++.++..+...+...+..+..++..++
T Consensus       476 ~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~  547 (888)
T d1qbkb_         476 LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLA  547 (888)
T ss_dssp             TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            234677777776 45778999999999999982  22221111  124555666666666665555555555544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0019  Score=67.18  Aligned_cols=146  Identities=10%  Similarity=-0.020  Sum_probs=92.4

Q ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhC--CchhHHHHH
Q 041050          186 LLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCG--NDKLQMKLR  263 (408)
Q Consensus       186 L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~--~~~~~~~i~  263 (408)
                      +...+. +++...|..|+.+++.++....+.....+. ..++.|+..+ ++++|.++..++++|+.++.  .+...... 
T Consensus       400 l~~~l~-s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l-~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-  475 (888)
T d1qbkb_         400 LKELLF-HHEWVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTY-  475 (888)
T ss_dssp             HHHTTT-SSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHT-TSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-
T ss_pred             HHHhhc-cchhHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhc-cCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-
Confidence            334444 467889999999999988763332222221 2467777887 67889999999999999872  11222222 


Q ss_pred             hcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHH
Q 041050          264 SEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRR  343 (408)
Q Consensus       264 ~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~  343 (408)
                      -...++.++..+.++++.|+..|+++|.+++....+..             ..+    . ..+++.++..+.......+.
T Consensus       476 ~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l-------------~p~----~-~~il~~l~~~l~~~~~~~~~  537 (888)
T d1qbkb_         476 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL-------------VPY----L-AYILDTLVFAFSKYQHKNLL  537 (888)
T ss_dssp             TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS-------------GGG----H-HHHHHHHHHHTTTCCHHHHH
T ss_pred             hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh-------------hhH----H-HHHHHHHHHHHhhhhHHHHH
Confidence            23577888888888999999999999999985111110             000    0 12445566666655555555


Q ss_pred             HHHHHHHHHc
Q 041050          344 HIELALCHLA  353 (408)
Q Consensus       344 ~a~~aL~~La  353 (408)
                      .+..++..++
T Consensus       538 ~~~~al~~l~  547 (888)
T d1qbkb_         538 ILYDAIGTLA  547 (888)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555554

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.023  Score=57.04  Aligned_cols=224  Identities=14%  Similarity=0.094  Sum_probs=127.7

Q ss_pred             HHHHHHhhc--CCCHHHHHHHHHHHHHHcC-C-----------------chhHHHHHHhCCHHHHHHHHcCCCCHHHHHH
Q 041050          142 LHKILSLLE--SEDANVRIHAVKVVANLAA-E-----------------EANQEKIVEAGGLSSLLMLLRSFEDETIRRV  201 (408)
Q Consensus       142 v~~Ll~lL~--s~~~~v~~~A~~aL~nLa~-~-----------------~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~  201 (408)
                      +..|++.+.  +.+..+|..|+-.|.|... .                 ++.+..+     -..++..+. ++++.+|..
T Consensus        41 ~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~i-----k~~ll~~l~-~~~~~vr~~  114 (861)
T d2bpta1          41 AGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQI-----KTNALTALV-SIEPRIANA  114 (861)
T ss_dssp             HHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHH-----HHHHHHHHT-CSSHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHH-----HHHHHHHHc-CCCHHHHHH
Confidence            455666665  3456788888877777653 1                 1122221     245666776 468899999


Q ss_pred             HHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCC-chhHHHHHh--cccHHHHHHhhc--
Q 041050          202 AAGAIANLAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGN-DKLQMKLRS--EGGIRALLGMVR--  276 (408)
Q Consensus       202 A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~--~g~l~~L~~lL~--  276 (408)
                      ++.+++.++.. +......  -..++.|+..+.+..++.++..++.++..+|.. +.....+..  ...+..++..+.  
T Consensus       115 ~a~~i~~i~~~-~~p~~~w--peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~  191 (861)
T d2bpta1         115 AAQLIAAIADI-ELPHGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQST  191 (861)
T ss_dssp             HHHHHHHHHHH-HGGGTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-hCCcCch--HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999988764 2110000  013566777775556677888889999999822 111111111  123344444443  


Q ss_pred             CCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHccC-
Q 041050          277 CGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQH-  355 (408)
Q Consensus       277 ~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~-  355 (408)
                      ..+..++..+..++.++...-....           ...     .....+++.+...+.+++++++..++.++..++.. 
T Consensus       192 ~~~~~v~~~a~~~l~~~~~~~~~~~-----------~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~  255 (861)
T d2bpta1         192 ETSKAVRLAALNALADSLIFIKNNM-----------ERE-----GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY  255 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGCHHHH-----------TSH-----HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhHhH-----------Hhh-----hhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999875111100           001     11223566778888999999999999999998865 


Q ss_pred             chhHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          356 EVNAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       356 ~~~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      .+........ .+..+.........+.++..|...+
T Consensus       256 ~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l  290 (861)
T d2bpta1         256 YTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFW  290 (861)
T ss_dssp             GGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHH
Confidence            2222221111 1333333333344455665555443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.45  E-value=0.0012  Score=58.00  Aligned_cols=155  Identities=17%  Similarity=0.114  Sum_probs=78.2

Q ss_pred             CHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHH
Q 041050          141 GLHKILSLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELI  220 (408)
Q Consensus       141 ~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  220 (408)
                      .++.|+.+++.+++.||..++..|.                 .+.|..++. +++..|+..++..   ++          
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~L~~L~~-D~d~~VR~~aa~~---l~----------  115 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLP-----------------REQLSALMF-DEDREVRITVADR---LP----------  115 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGGGGGTTT-CSCHHHHHHHHHH---SC----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHHHHHHhc-CCChhHHHHHHhc---cC----------
Confidence            4667778888888888888875431                 123444444 4566666655432   21          


Q ss_pred             HhcCcHHHHHHHhhcCCCHHHHHHHHHH-----HHHHh--CCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 041050          221 MAQGGISLLSTTAADAEDPQTLRMVAGA-----IANLC--GNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANF  293 (408)
Q Consensus       221 ~~~g~i~~Lv~lL~~~~~~~v~~~a~~a-----L~nL~--~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL  293 (408)
                           .+.|..++ .++++.|+..++..     |.-+.  .++..+..+...-+.+.|..+++++++.|+..++..+.. 
T Consensus       116 -----~~~L~~Ll-~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L~~-  188 (233)
T d1lrva_         116 -----LEQLEQMA-ADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG-  188 (233)
T ss_dssp             -----TGGGGGGT-TCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCG-
T ss_pred             -----HHHHHHHh-cCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhcCc-
Confidence                 12233333 33444444444332     11111  112222333333344556677777888888777654321 


Q ss_pred             hccchhhhhHHHhhhhhccCChh--hHHHHHhcCcHHHHHHhccCCCHHHHHHHH
Q 041050          294 AKCESRAATQVRFIRCTATGVKS--GRSLLIEDGALPWIVQNANNEAAPIRRHIE  346 (408)
Q Consensus       294 ~~~~~~~~~~~~~~i~~~~~~~~--~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~  346 (408)
                           +.       +..+.++++  .+....+. +.+.++..|..++++||..|.
T Consensus       189 -----~~-------L~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         189 -----DD-------LLELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             -----GG-------GGGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHHH
T ss_pred             -----HH-------HHHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHHH
Confidence                 11       111223332  33344443 345566677777777777665

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.33  Score=43.43  Aligned_cols=222  Identities=10%  Similarity=0.083  Sum_probs=161.0

Q ss_pred             HHHHHhcCHHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhH----HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 041050          134 TKLFEQVGLHKILSLLESEDANVRIHAVKVVANLAA-EEANQ----EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIAN  208 (408)
Q Consensus       134 ~~l~~~~~v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~----~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~n  208 (408)
                      .++...+-+..|+..|..-+-+.|..++.+..++-. ....+    +.+...  -..|..++...+++++.-.+...|..
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLRE  140 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHHH
Confidence            356666778888899999999999999999999876 33222    444432  23333444433466777777788888


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCchhHHHHHhcc---cHHHHHHhhcCCCHHHHH
Q 041050          209 LAMNAEANQELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDKLQMKLRSEG---GIRALLGMVRCGHPDVLS  284 (408)
Q Consensus       209 La~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~~~~~i~~~g---~l~~L~~lL~~~~~~v~~  284 (408)
                      ...+ +.....|.+...+..+...+ ..+.-++..-|..++.-+- .++.....+...+   .+.....++.+++--+++
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv-~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYV-EMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHT-TCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            8888 99999999999999999987 6677889888988888776 6666666665544   455667788999999999


Q ss_pred             HHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHH----hcCcHHHHHHhccCCCHHHHHHHHHHHHHHccCch---
Q 041050          285 QVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLI----EDGALPWIVQNANNEAAPIRRHIELALCHLAQHEV---  357 (408)
Q Consensus       285 ~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~----~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~---  357 (408)
                      ++...|+.+-.                  ++.+...|.    +..-+..++.+|++....++.+|..++--+..++.   
T Consensus       219 qSlKLLgelLl------------------dr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~  280 (330)
T d1upka_         219 QSLKLLGELLL------------------DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ  280 (330)
T ss_dssp             HHHHHHHHHHH------------------SGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred             HHHHHHHHHHh------------------hhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCH
Confidence            99999999985                  333333332    22346788899999999999999999999888754   


Q ss_pred             hHHHHH---hCCcHHHHHHHHhc
Q 041050          358 NAREMI---SGGALWELVRISRD  377 (408)
Q Consensus       358 ~~~~l~---~~g~i~~L~~ll~~  377 (408)
                      ....+.   +...+..|..+..+
T Consensus       281 ~I~~IL~~Nr~kLl~fl~~f~~d  303 (330)
T d1upka_         281 PILDILLKNQAKLIEFLSKFQND  303 (330)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHhHHHHHHHHHhCCCC
Confidence            333333   34455555555443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.43  Score=47.49  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=127.7

Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHHcC-CchhHH-HHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH
Q 041050          142 LHKILSLLES--EDANVRIHAVKVVANLAA-EEANQE-KIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ  217 (408)
Q Consensus       142 v~~Ll~lL~s--~~~~v~~~A~~aL~nLa~-~~~~~~-~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~  217 (408)
                      ++.++..+.+  ++.+++..|+.++.+... .+..-. .....-.++.+...+. ++++.++..+..++..+....+..-
T Consensus       174 l~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~v~~~~~~~l~~l~~~~~~~~  252 (876)
T d1qgra_         174 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQ-CPDTRVRVAALQNLVKIMSLYYQYM  252 (876)
T ss_dssp             HHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHSGGGC
T ss_pred             HHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhHHHH
Confidence            5666666653  457899999999987765 222111 1111112455556665 5788999999999998877545444


Q ss_pred             HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHhCCch-hHH--------------------HHHhcccHHHHHHhhc
Q 041050          218 ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIANLCGNDK-LQM--------------------KLRSEGGIRALLGMVR  276 (408)
Q Consensus       218 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~-~~~--------------------~i~~~g~l~~L~~lL~  276 (408)
                      ...+.....+.+...+ ....+.+...+...+..++.... ...                    .......++.+...+.
T Consensus       253 ~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  331 (876)
T d1qgra_         253 ETYMGPALFAITIEAM-KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  331 (876)
T ss_dssp             HHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            4444444445555554 56777888888887777763111 000                    0001122333333332


Q ss_pred             C-------CCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050          277 C-------GHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       277 ~-------~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                      .       ++..++..+..++..++.+.               ++ .    +. ..+++.+.+.+.+.++..+..++.++
T Consensus       332 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~---------------~~-~----~~-~~~~~~i~~~l~~~~~~~r~~~~~~l  390 (876)
T d1qgra_         332 KQDENDDDDDWNPCKAAGVCLMLLATCC---------------ED-D----IV-PHVLPFIKEHIKNPDWRYRDAAVMAF  390 (876)
T ss_dssp             CCCSSCCTTCCCHHHHHHHHHHHHHHHH---------------GG-G----GH-HHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             hcccccccccchHHHHHHHHHHHHHHHh---------------hh-h----hh-hhhHHHHHHhhccchHHHHHHHHHHH
Confidence            1       12236666667777666410               11 1    11 12445667777888999999999999


Q ss_pred             HHHccCch-hHHHHHhCCcHHHHHHHHhcCCHHHHHHHHHHHH
Q 041050          350 CHLAQHEV-NAREMISGGALWELVRISRDCSREDIRSLAHRTL  391 (408)
Q Consensus       350 ~~La~~~~-~~~~l~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  391 (408)
                      ..++.... ....-.-...++.+...+.+.+ ..++..|.+++
T Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~-~~vr~~a~~~l  432 (876)
T d1qgra_         391 GCILEGPEPSQLKPLVIQAMPTLIELMKDPS-VVVRDTAAWTV  432 (876)
T ss_dssp             HHTSSSSCHHHHHHHHHHHHHHHHHHHTCSS-HHHHHHHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHH
Confidence            99887632 2212222345677777777554 34555555444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.38  Score=42.98  Aligned_cols=193  Identities=17%  Similarity=0.091  Sum_probs=141.0

Q ss_pred             HHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhH----HHHHhcCcHHHHHHHhhcCCCHHHHHHHHHHHH
Q 041050          175 EKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQ----ELIMAQGGISLLSTTAADAEDPQTLRMVAGAIA  250 (408)
Q Consensus       175 ~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~----~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~  250 (408)
                      ..+...+.+..|+..|.. -+-+.|+.++.+..++-......+    +-+...  ...|..++...+++++-..+-..|.
T Consensus        63 ~e~~~~d~l~~Li~~L~~-L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye~~eiAl~~G~mLR  139 (330)
T d1upka_          63 QELYNSGLLSTLVADLQL-IDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYESPEIALNCGIMLR  139 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGG-SCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCC-CCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcCCcchhhhhhHHHH
Confidence            356667778888888873 578899999999999977643333    333322  2445555555566667666666666


Q ss_pred             HHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcC---cH
Q 041050          251 NLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDG---AL  327 (408)
Q Consensus       251 nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g---~l  327 (408)
                      -....+.....+.....+..+......++.++...|..++..+-.                 .++.....+...+   ..
T Consensus       140 Ecik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt-----------------~hk~~~aefl~~Nyd~Ff  202 (330)
T d1upka_         140 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLT-----------------RHKLLSAEFLEQHYDRFF  202 (330)
T ss_dssp             HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHH-----------------SSHHHHHHHHHHTHHHHH
T ss_pred             HHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHH-----------------hCHHHHHHHHHHhHHHHH
Confidence            666888888888888888889999999999999999999988874                 5666555666543   45


Q ss_pred             HHHHHhccCCCHHHHHHHHHHHHHHccCchhHHHHH----hCCcHHHHHHHHhcCCHHHHHHHHH
Q 041050          328 PWIVQNANNEAAPIRRHIELALCHLAQHEVNAREMI----SGGALWELVRISRDCSREDIRSLAH  388 (408)
Q Consensus       328 ~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~~~~~l~----~~g~i~~L~~ll~~~~~~~~~~~A~  388 (408)
                      .....++.+++.-+++.+...|+.+-.+..|...|.    +..-+..++.++++.+ ..++-.|-
T Consensus       203 ~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~s-k~Iq~EAF  266 (330)
T d1upka_         203 SEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS-RNIQFEAF  266 (330)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC-HHHHHHHH
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCch-hhHHHHhh
Confidence            567789999999999999999999999988876664    3445677788888655 34443343

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.26  Score=49.12  Aligned_cols=193  Identities=8%  Similarity=0.039  Sum_probs=112.3

Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHcC-CchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHH-
Q 041050          142 LHKILSLLESEDANVRIHAVKVVANLAA-EEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQEL-  219 (408)
Q Consensus       142 v~~Ll~lL~s~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~-  219 (408)
                      ++.+...+.+++++++..++..|..+.. .++.-...+.....+.+...+. +.++.++..+...+..++......... 
T Consensus       219 ~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~  297 (876)
T d1qgra_         219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAIEA  297 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445566678999999999999998876 4433223333323444555555 467788888888777776531111100 


Q ss_pred             -------------------HHhcCcHHHHHHHhhcC------CCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHh
Q 041050          220 -------------------IMAQGGISLLSTTAADA------EDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGM  274 (408)
Q Consensus       220 -------------------i~~~g~i~~Lv~lL~~~------~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~l  274 (408)
                                         ......++.+...+...      ++..++..+..++..++.....  .+. ...++.+...
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~-~~~~~~i~~~  374 (876)
T d1qgra_         298 SEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEH  374 (876)
T ss_dssp             HHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHH
T ss_pred             hHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--hhh-hhhHHHHHHh
Confidence                               00111223333333211      1223566666666666521110  011 1123445556


Q ss_pred             hcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          275 VRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       275 L~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      +.+++...+..++.++..+..                 +.......-.-..+++.++..+.++++.++..+++++..++.
T Consensus       375 l~~~~~~~r~~~~~~l~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~  437 (876)
T d1qgra_         375 IKNPDWRYRDAAVMAFGCILE-----------------GPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE  437 (876)
T ss_dssp             TTCSSHHHHHHHHHHHHHTSS-----------------SSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHHHHHhhhh-----------------hhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHH
Confidence            678888899888888888874                 221111111123578889999999999999999999999885


Q ss_pred             C
Q 041050          355 H  355 (408)
Q Consensus       355 ~  355 (408)
                      .
T Consensus       438 ~  438 (876)
T d1qgra_         438 L  438 (876)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.84  E-value=0.0099  Score=51.81  Aligned_cols=136  Identities=21%  Similarity=0.108  Sum_probs=82.3

Q ss_pred             HhhcCCCHHHHHHHHHHHHHHcCCchhHHHHHHhCCHHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcH
Q 041050          147 SLLESEDANVRIHAVKVVANLAAEEANQEKIVEAGGLSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGI  226 (408)
Q Consensus       147 ~lL~s~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i  226 (408)
                      .+|.++..++|..|+.                 .-.+..|..+++ ++++.||..|+..   |.               .
T Consensus        49 ~~l~~p~~e~Ra~Aa~-----------------~a~~~~L~~Ll~-D~d~~VR~~AA~~---Lp---------------~   92 (233)
T d1lrva_          49 QYLADPFWERRAIAVR-----------------YSPVEALTPLIR-DSDEVVRRAVAYR---LP---------------R   92 (233)
T ss_dssp             GGTTCSSHHHHHHHHT-----------------TSCGGGGGGGTT-CSSHHHHHHHHTT---SC---------------S
T ss_pred             HHhcCCcHHHHHHHHh-----------------cCCHHHHHHHhc-CCCHHHHHHHHHH---cC---------------H
Confidence            5677888888866653                 123667777887 5799999988653   21               2


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHHhCCchhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHh
Q 041050          227 SLLSTTAADAEDPQTLRMVAGAIANLCGNDKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRF  306 (408)
Q Consensus       227 ~~Lv~lL~~~~~~~v~~~a~~aL~nL~~~~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~  306 (408)
                      +.|..++ ..+++.|+..++..+   .              ...|..++.++++.|+..++..   +..   ..      
T Consensus        93 ~~L~~L~-~D~d~~VR~~aa~~l---~--------------~~~L~~Ll~D~d~~VR~~aa~~---~~~---~~------  142 (233)
T d1lrva_          93 EQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IPP---GR------  142 (233)
T ss_dssp             GGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SCG---GG------
T ss_pred             HHHHHHh-cCCChhHHHHHHhcc---C--------------HHHHHHHhcCCCHHHHHHHHhc---cch---hH------
Confidence            4455665 678889998776543   1              2345556667777777666543   111   00      


Q ss_pred             hhhhcc--CChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHHHHH
Q 041050          307 IRCTAT--GVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIELAL  349 (408)
Q Consensus       307 ~i~~~~--~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~~aL  349 (408)
                       +..++  .++..+..+...-..++|..+++++++.||..++..+
T Consensus       143 -L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         143 -LFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -GGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -HHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence             00111  2344444454444456777777777888887777543

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.11  E-value=0.37  Score=48.93  Aligned_cols=136  Identities=10%  Similarity=0.030  Sum_probs=97.2

Q ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccCChhhHHHHHhcCcHHHHHHHhhcCC-CHHHHHHHHHHHHHHhC---C---
Q 041050          183 LSSLLMLLRSFEDETIRRVAAGAIANLAMNAEANQELIMAQGGISLLSTTAADAE-DPQTLRMVAGAIANLCG---N---  255 (408)
Q Consensus       183 i~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~v~~~a~~aL~nL~~---~---  255 (408)
                      ++.|..+|..+.+++.++.|-.-|..+..+ |         |....|+.++.+.. +..+|..|+-.+.|...   .   
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~   73 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQ-D---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN   73 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-T---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-C---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            567888887667788899999999998777 5         45667777765443 56788888888888761   1   


Q ss_pred             ------chhHHHHHhcccHHHHHHhhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHH
Q 041050          256 ------DKLQMKLRSEGGIRALLGMVRCGHPDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPW  329 (408)
Q Consensus       256 ------~~~~~~i~~~g~l~~L~~lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~  329 (408)
                            ++.+..|.+     .|+..+.+++..++...+.+++.++..+               +..+|      .++++.
T Consensus        74 ~~~~i~~e~k~~Ik~-----~ll~~l~~~~~~ir~~l~~~i~~I~~~d---------------~p~~W------p~ll~~  127 (959)
T d1wa5c_          74 GNHLLPANNVELIKK-----EIVPLMISLPNNLQVQIGEAISSIADSD---------------FPDRW------PTLLSD  127 (959)
T ss_dssp             SCBSSCHHHHHHHHH-----HHHHHHHHSCHHHHHHHHHHHHHHHHHH---------------STTTC------TTHHHH
T ss_pred             ccCCCCHHHHHHHHH-----HHHHHHhCCcHHHHHHHHHHHHHHHHHh---------------Ccccc------HHHHHH
Confidence                  123344433     3555556678889999999999988511               11111      257888


Q ss_pred             HHHhccCCCHHHHHHHHHHHHHHcc
Q 041050          330 IVQNANNEAAPIRRHIELALCHLAQ  354 (408)
Q Consensus       330 Lv~lL~~~~~~v~~~a~~aL~~La~  354 (408)
                      |++.++++++..+..+..++..++.
T Consensus       128 l~~~l~s~~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         128 LASRLSNDDMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             HHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9999998888888888889888875

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=2.4  Score=38.13  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=101.1

Q ss_pred             chHHHHHHhcCHHHHHHhhc--------C---CCHHHHHHHHHHHHHHcCCchhHHHHHHhC-CHHHHHHHHcCCCCHHH
Q 041050          131 APITKLFEQVGLHKILSLLE--------S---EDANVRIHAVKVVANLAAEEANQEKIVEAG-GLSSLLMLLRSFEDETI  198 (408)
Q Consensus       131 ~~~~~l~~~~~v~~Ll~lL~--------s---~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g-~i~~L~~lL~~~~~~~v  198 (408)
                      ..++.+ ..+|+..|+.+|.        +   .+...+..++.+|..+.........+++.. ++..|...|.+ +.+.+
T Consensus        37 sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s-~~~~t  114 (343)
T d2bnxa1          37 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDP-AVPNM  114 (343)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCT-TSHHH
T ss_pred             hHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCC-CchHH
Confidence            344554 5667777777663        1   135677889999999988777777777655 58888888884 68899


Q ss_pred             HHHHHHHHHHhccCC--hhhHHH----------HHhcCcHHHHHHHhhcCCCHHHHHHHHHHHHHHh-CCch------hH
Q 041050          199 RRVAAGAIANLAMNA--EANQEL----------IMAQGGISLLSTTAADAEDPQTLRMVAGAIANLC-GNDK------LQ  259 (408)
Q Consensus       199 ~~~A~~aL~nLa~~~--~~~~~~----------i~~~g~i~~Lv~lL~~~~~~~v~~~a~~aL~nL~-~~~~------~~  259 (408)
                      +..|...|..+|..+  +..-..          .-+.+-...++..+..+...+....+...|-.|. +.+.      .|
T Consensus       115 r~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR  194 (343)
T d2bnxa1         115 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIR  194 (343)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHH
Confidence            999999999998652  122222          2334455678888776667777777666666666 3332      24


Q ss_pred             HHHHhcccHHHHHHhhcCCCHHHHHHH
Q 041050          260 MKLRSEGGIRALLGMVRCGHPDVLSQV  286 (408)
Q Consensus       260 ~~i~~~g~l~~L~~lL~~~~~~v~~~a  286 (408)
                      ..+...|..+.+-.+=..+++++..+.
T Consensus       195 ~E~~~~Gl~~il~~l~~~~~~~L~~Qi  221 (343)
T d2bnxa1         195 SELMRLGLHQVLQELREIENEDMKVQL  221 (343)
T ss_dssp             HHHHHTTHHHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHCChHHHHHHHHccCChHHHHHH
Confidence            455666666544444456667665544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.54  E-value=3.4  Score=36.97  Aligned_cols=168  Identities=16%  Similarity=0.154  Sum_probs=104.6

Q ss_pred             HHcCCchhHHHHHHhCCHHHHHHHHcC----------CCCHHHHHHHHHHHHHhccCChhhHHHHH-hcCcHHHHHHHhh
Q 041050          166 NLAAEEANQEKIVEAGGLSSLLMLLRS----------FEDETIRRVAAGAIANLAMNAEANQELIM-AQGGISLLSTTAA  234 (408)
Q Consensus       166 nLa~~~~~~~~i~~~g~i~~L~~lL~~----------~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~~g~i~~Lv~lL~  234 (408)
                      .|...+..+-+-+..+|+..|+.+|..          ..+......++.+|..|... ......++ ..+++..|+..+ 
T Consensus        30 ~Lrt~~~sWv~~F~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~-~~G~~~vl~~~~~i~~l~~~L-  107 (343)
T d2bnxa1          30 SLNNNPVSWVQTFGAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAM-  107 (343)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSS-HHHHHHHHHSSSHHHHHHHTC-
T ss_pred             HHhcCCchHHHHHHhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhcc-HHHHHHHHcChHHHHHHHHcc-
Confidence            344455555544567788888888731          12355677789999999888 66666555 567778888877 


Q ss_pred             cCCCHHHHHHHHHHHHHHhCC---chhHHHH----------HhcccHHHHHHhhcC-CCHHHHHHHHHHHHHhhccchhh
Q 041050          235 DAEDPQTLRMVAGAIANLCGN---DKLQMKL----------RSEGGIRALLGMVRC-GHPDVLSQVARGIANFAKCESRA  300 (408)
Q Consensus       235 ~~~~~~v~~~a~~aL~nL~~~---~~~~~~i----------~~~g~l~~L~~lL~~-~~~~v~~~a~~aL~nL~~~~~~~  300 (408)
                      .++.+.++..|...|+.+|..   +.+...+          .+.+-+..++..++. .+.+.+..++..+-.+..+ .+.
T Consensus       108 ~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~-~~d  186 (343)
T d2bnxa1         108 DPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP-AEE  186 (343)
T ss_dssp             CTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT-CSC
T ss_pred             CCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcC-ccc
Confidence            678899999999999999932   2333322          234456778887754 4566666655555555531 111


Q ss_pred             hhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccCCCHHHHHHHH
Q 041050          301 ATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANNEAAPIRRHIE  346 (408)
Q Consensus       301 ~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~~~~v~~~a~  346 (408)
                      . +         .--..|..+...|..+.+-.+=..+++++..+.-
T Consensus       187 l-~---------~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~Qi~  222 (343)
T d2bnxa1         187 L-D---------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  222 (343)
T ss_dssp             H-H---------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHHHH
T ss_pred             H-H---------HHHHHHHHHHHCChHHHHHHHHccCChHHHHHHH
Confidence            0 0         0123566677788776655554445666555443

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.36  E-value=2.3  Score=38.08  Aligned_cols=162  Identities=12%  Similarity=0.032  Sum_probs=99.7

Q ss_pred             HHHHHHhhcC----CCHHHHHHHHHHHHHHcC----C-chhHHHHHHhCCHHHHHHH----HcCCCCHHHHHHHHHHHHH
Q 041050          142 LHKILSLLES----EDANVRIHAVKVVANLAA----E-EANQEKIVEAGGLSSLLML----LRSFEDETIRRVAAGAIAN  208 (408)
Q Consensus       142 v~~Ll~lL~s----~~~~v~~~A~~aL~nLa~----~-~~~~~~i~~~g~i~~L~~l----L~~~~~~~v~~~A~~aL~n  208 (408)
                      +..+..++.+    .++.++..+.-++++|..    . +....     ..++.+...    .. ..+.+-...++.+|+|
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~-~~~~~~~~~~LkaLGN  198 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSD-RAKEEEIVLALKALGN  198 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhc-ccchHHHHHHHHHHhc
Confidence            3445566653    578888888888888864    1 11111     123333333    33 3466666778999999


Q ss_pred             hccCChhhHHHHHhcCcHHHHHHHhhc------CCCHHHHHHHHHHHHHHhCC-chhHHHHHhcccHHHHHHhh--cCCC
Q 041050          209 LAMNAEANQELIMAQGGISLLSTTAAD------AEDPQTLRMVAGAIANLCGN-DKLQMKLRSEGGIRALLGMV--RCGH  279 (408)
Q Consensus       209 La~~~~~~~~~i~~~g~i~~Lv~lL~~------~~~~~v~~~a~~aL~nL~~~-~~~~~~i~~~g~l~~L~~lL--~~~~  279 (408)
                      +...           +.++.|..++..      ..++.++..|++++.+++.. +..        +.+.+..+.  ...+
T Consensus       199 ~g~p-----------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~l~~i~~n~~e~  259 (336)
T d1lsha1         199 AGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIK  259 (336)
T ss_dssp             HTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSC
T ss_pred             cCCH-----------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHHHHHHHcCCCCC
Confidence            9754           246777766632      23567999999999999743 321        112245555  3567


Q ss_pred             HHHHHHHHHHHHHhhccchhhhhHHHhhhhhccCChhhHHHHHhcCcHHHHHHhccC-CCHHHHHHHHHHHHHHccC
Q 041050          280 PDVLSQVARGIANFAKCESRAATQVRFIRCTATGVKSGRSLLIEDGALPWIVQNANN-EAAPIRRHIELALCHLAQH  355 (408)
Q Consensus       280 ~~v~~~a~~aL~nL~~~~~~~~~~~~~~i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~-~~~~v~~~a~~aL~~La~~  355 (408)
                      +++|..|...|..-.   +.                        ...+..+...+.. .+..|.-.+...|.+++..
T Consensus       260 ~EvRiaA~~~lm~t~---P~------------------------~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         260 SELRIRSCIVFFESK---PS------------------------VALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             HHHHHHHHHHHHHTC---CC------------------------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHhcC---CC------------------------HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence            888876666665421   11                        1245566666654 4777888888888888875

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.17  E-value=1.7  Score=38.97  Aligned_cols=120  Identities=9%  Similarity=0.077  Sum_probs=70.7

Q ss_pred             CCHHHHHHHHHHHHHHh----C-CchhHHHHHhcccHHHHHH----hhcCCCHHHHHHHHHHHHHhhccchhhhhHHHhh
Q 041050          237 EDPQTLRMVAGAIANLC----G-NDKLQMKLRSEGGIRALLG----MVRCGHPDVLSQVARGIANFAKCESRAATQVRFI  307 (408)
Q Consensus       237 ~~~~v~~~a~~aL~nL~----~-~~~~~~~i~~~g~l~~L~~----lL~~~~~~v~~~a~~aL~nL~~~~~~~~~~~~~~  307 (408)
                      .++.++..+.-++++|.    . ++.+..     ..++.+..    ....++.+-.-.++.+|+|+.             
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g-------------  200 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG-------------  200 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------------
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcH-----HHHHHHHHHHHHhhcccchHHHHHHHHHHhccC-------------
Confidence            45667666666666664    2 222211     22333333    334566666667789999984             


Q ss_pred             hhhccCChhhHHHHHhcCcHHHHHHhccCC-------CHHHHHHHHHHHHHHccCchhHHHHHhCCcHHHHHHHHhcCC-
Q 041050          308 RCTATGVKSGRSLLIEDGALPWIVQNANNE-------AAPIRRHIELALCHLAQHEVNAREMISGGALWELVRISRDCS-  379 (408)
Q Consensus       308 i~~~~~~~~~~~~i~~~g~l~~Lv~lL~~~-------~~~v~~~a~~aL~~La~~~~~~~~l~~~g~i~~L~~ll~~~~-  379 (408)
                            ++         +.++.|.+++.+.       +..+|..|++++.+++...+..       +.+.+..+..... 
T Consensus       201 ------~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e  258 (336)
T d1lsha1         201 ------QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAI  258 (336)
T ss_dssp             ------CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTS
T ss_pred             ------CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCC
Confidence                  22         3577888877542       5779999999999998874332       2344555554333 


Q ss_pred             HHHHHHHHH-HHHhccHh
Q 041050          380 REDIRSLAH-RTLSSSLT  396 (408)
Q Consensus       380 ~~~~~~~A~-~~L~~~~~  396 (408)
                      +.++|-+|. -++.++|+
T Consensus       259 ~~EvRiaA~~~lm~t~P~  276 (336)
T d1lsha1         259 KSELRIRSCIVFFESKPS  276 (336)
T ss_dssp             CHHHHHHHHHHHHHTCCC
T ss_pred             ChHHHHHHHHHHHhcCCC
Confidence            234676666 44555554