Citrus Sinensis ID: 041054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLSTSFSKMGGRGSGRIAAENEWIDKR
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHccHHHccccccccccccccccccccccccccccccEEEEccccEEEEcccccHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHHccccccccEEccccccccc
Coil and Loop (DISEMBL)
GYARFVnirdgrgatplhlaarqrRPECVHILLDSGAlvcastggygcpgstplhlaarggSIDCIRELLAWGAdrlhrdvsgrIPYAVALKHKHGACaallnpasaeplvwpsplKFISELNQEAKALLENALMEANKEREKNILkgtayslpspshsdvgaddniseasdtelccICFEQVCtievqdcghqmCAQCTlalcchnkpnpttacltppvcpfcrstIAHLVVVKIenqedadrdigdisspklrkarksrnfsegsssfkgLSTSFSkmggrgsgriaaenewidkr
Flexible Loop (DISEMBL)
gyarfvnirdgrgatplhlaarQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKienqedadrdigdisspklrkarksrnfsegsssfkglstsfskmggrgsgriaaenewidkr
Low Complexity Region (SEG)
GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDADRDIGDISSPKLRKARKSRNfsegsssfkglstsfskMGGRGSGRIAAENEWIDKR
Disordered region (IsUnstruct)
****FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ****L*******************************************TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE*************************************************************
Disordered Region (DISOPRED)
GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCC*************PVCPFCRSTIAHLVV*****************************************************************
Disordered Region (DISEMBL)
GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDADRDIGDISSPK*****************KGLSTSFSKMGGRGSGRIAAENEWIDKR
Disordered Region (DISPRO)
*****VN***GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYS*******************DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE*************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPxxxxxxxxxxxxxxxxxxxxxxxxxxxxNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLSTSFSKMGGRGSGRIAAENEWIDKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	298	2.2.26 [Sep-21-2011]
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.989	0.646	0.764	1e-135
Q65XV2	450	E3 ubiquitin-protein liga	yes	no	0.979	0.648	0.680	1e-108
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.922	0.616	0.572	9e-87
Q337A0	520	Probable E3 ubiquitin-pro	no	no	0.637	0.365	0.309	8e-18
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.657	0.395	0.295	3e-17
Q4FE45	513	E3 ubiquitin-protein liga	no	no	0.651	0.378	0.313	1e-16
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.674	0.478	0.306	1e-16
Q6KAE5	496	Probable E3 ubiquitin-pro	no	no	0.657	0.395	0.306	1e-13
Q54BA2	806	Ankyrin repeat, bromo and	yes	no	0.312	0.115	0.443	1e-10
Q6NLQ8	508	E3 ubiquitin-protein liga	no	no	0.617	0.362	0.284	2e-09

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  482 bits (1240), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 260/310 (83%), Gaps = 15/310 (4%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           GYARFVNIRD +GATPLHLAARQRRPECV++LLDSG+LVCAST  YG PGSTPLHLAAR 
Sbjct: 146 GYARFVNIRDDKGATPLHLAARQRRPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAARS 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GSIDC+R+LLAWGADRL RD SGRIPY VA+KHKHGAC ALLNP+SAEPLVWPSPLKFIS
Sbjct: 206 GSIDCVRKLLAWGADRLQRDASGRIPYVVAMKHKHGACGALLNPSSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELN EAK LLE ALMEAN+EREK ILKGTAYSLPSPS SD   DDN+SE SDTELCCICF
Sbjct: 266 ELNDEAKLLLEQALMEANREREKTILKGTAYSLPSPSFSDT--DDNMSEVSDTELCCICF 323

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK----- 235
           EQVCTIEV+DCGHQMCAQCTLALCCHNKPNPTT+ +TPPVCPFCRSTIA LVV +     
Sbjct: 324 EQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTTSTVTPPVCPFCRSTIACLVVAQNNNNN 383

Query: 236 ------IENQEDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLST--SFSKMGGRGSGR 287
                 +++    DR+ GD+SS K RK R+S N  E SSSF GLST  SF ++ GRGSGR
Sbjct: 384 NEKSKSLDDVVVVDREAGDVSSSKFRKHRRSINLGEESSSFMGLSTIGSFGRITGRGSGR 443

Query: 288 IAAENEWIDK 297
           IAAENE +DK
Sbjct: 444 IAAENELMDK 453

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  390 bits (1002), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/304 (68%), Positives = 238/304 (78%), Gaps = 12/304 (3%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVN+RD  GATPLHLAARQ RP CV +LL++GA+V A TG YG PGST LHLAAR 
Sbjct: 147 GFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARS 206

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           G++DCIR+LLAWGADRL RD +GRIPY+VALK  HGACAALLNP SAEP+VWPSPLKFIS
Sbjct: 207 GNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFIS 266

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPS-HSDVGADDNISEASDTELCCIC 179
           EL  EAKALLE ALMEAN+EREK IL GT YSLPSPS   D   DD  SE SDTELCCIC
Sbjct: 267 ELEPEAKALLEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCIC 326

Query: 180 FEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ 239
           F+Q CTIEVQDCGHQMCA CTLALCCHNKPNPTT     P CPFCR +I+ LVV +  + 
Sbjct: 327 FDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTTLTPPSPACPFCRGSISRLVVAQTRSA 386

Query: 240 EDADRDIGDISSPKL--RKARKSRNFSEGSSSFKGLST---SFSKMGGRGSGRIA-AENE 293
            D D+     SS +L  +++R+S N SEGSSSFKGL +   SFSK+ GRGS R+A +++ 
Sbjct: 387 CDPDKP----SSLQLTRKRSRRSHNLSEGSSSFKGLPSAMGSFSKL-GRGSSRMADSDSS 441

Query: 294 WIDK 297
            +DK
Sbjct: 442 NLDK 445

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score =  320 bits (819), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 169/295 (57%), Positives = 207/295 (70%), Gaps = 20/295 (6%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVN+RD RGATPLHLAAR  R  CV +LLD GA+V A T  YG PGST LHLAAR 
Sbjct: 149 GFARFVNVRDERGATPLHLAARHARASCVRLLLDKGAIVSAPTAVYGFPGSTALHLAARA 208

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS++CIRELLAWGADRL RD +GRI YAVA++  H ACAALLNPA+AEP+VWPSPLKFI 
Sbjct: 209 GSMECIRELLAWGADRLQRDSAGRIAYAVAMRRGHRACAALLNPAAAEPIVWPSPLKFIG 268

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           EL  +AKALLE ALMEAN+EREK IL G+  ++        G D+      + E C ICF
Sbjct: 269 ELEADAKALLEAALMEANREREKRILHGSDINIK-------GGDEEEESEDEEEACNICF 321

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           EQ C++EV++CGHQMCA CTLA+CCH+KPNP T  L PP CPFCR+TI+ LVV    + +
Sbjct: 322 EQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPPACPFCRTTISRLVVATTNSNK 381

Query: 241 DADRDIGDISSPKLRKARKSRNFSEGSSSFKGLSTSFSKMGGRGSGRIAAENEWI 295
                    ++ + R   +S +F  G SS  G   SFS++ GRGSGR+  +   +
Sbjct: 382 ---------TNSRRRSRSRSSSFKGGLSSAMG---SFSRI-GRGSGRLVVDGSSV 423

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/239 (30%), Positives = 105/239 (43%), Gaps = 49/239 (20%)

Query: 4   RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLHLA 57
           R++N     G T LH+AA     +C+ +L+D GA V A T  YG        GSTPLH A
Sbjct: 177 RYINKPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYA 236

Query: 58  ARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE--PLVWPS- 114
           A GG+ +C + LL+ GA +L  + +G +P  VA          LL+P S    P   PS 
Sbjct: 237 AGGGNAECCQLLLSKGASKLTLNCNGWLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSN 296

Query: 115 --PLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASD 172
              L F+S LN                 RE  +L                    ++   D
Sbjct: 297 YLALPFMSILN---------------IAREFGLLH------------------TVASVDD 323

Query: 173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPP---VCPFCRSTI 228
           ++LC +C E+ C++  + C H+ C +C L LC  +  N       PP    CP CR+ I
Sbjct: 324 SDLCAVCLERSCSVAAEGCCHEFCIKCALYLC--STSNTRVEFTGPPGSIPCPLCRNGI 380

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score = 89.4 bits (220), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/240 (29%), Positives = 98/240 (40%), Gaps = 44/240 (18%)

Query: 4   RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLHLA 57
           R +N +   G TPLHLAA     ECV +LLD GA V   T   G        GSTPLH A
Sbjct: 172 RLINNKSDGGVTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYA 231

Query: 58  ARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLK 117
           A GGS  C + L+A GA+   ++ +G  P  VA      +   +L   S  P+       
Sbjct: 232 ACGGSAVCCQLLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSEVPV------- 284

Query: 118 FISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTEL-- 175
                                      IL  +  SLP  S   +  +    + S + +  
Sbjct: 285 --------------------------RILPSSYLSLPLMSIVKIARECGWRKTSVSSVCH 318

Query: 176 --CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPV-CPFCRSTIAHLV 232
             C IC +  CT+  + CGH+ C +C L LC     + +   +   + CP CR TI   V
Sbjct: 319 DPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIRGVPGSIPCPLCRHTIVSFV 378

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 107/236 (45%), Gaps = 42/236 (17%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLHL 56
           ++FVN     G T LH+AA     +CV +LLD  A V A T  YG        GSTPLH 
Sbjct: 162 SKFVNKAADGGITALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHY 221

Query: 57  AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA-LKHKHGACAALLNPASAEPLVWPSP 115
           AA GG++ C + LLA GA ++  + +G +P  +A +  +H            EPL+ P+ 
Sbjct: 222 AACGGNLKCCQILLARGARKMTLNCNGWLPIDIARMWSRHW----------LEPLLSPNS 271

Query: 116 LKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTEL 175
              I      +  L    L   N  RE        + L S +  D           + ++
Sbjct: 272 DVVIPAF-PHSNYLSLPLLSILNIARE--------FGLQSATIGD-----------EVDI 311

Query: 176 CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPP---VCPFCRSTI 228
           C +C E+ CT+  + C HQ+C +C L LC  +  N  +  + PP    CP CR  I
Sbjct: 312 CAVCLERTCTVAAEGCEHQLCVRCALYLC--SSSNVPSVTVGPPGSIPCPLCRHGI 365

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 103/232 (44%), Gaps = 31/232 (13%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GSTPLHLA 57
           +VN     G T LHLAA     ECVH+L+D  A + A T     P       GSTPLH A
Sbjct: 142 YVNKAANGGVTALHLAALHGHVECVHLLIDERASLAAQTLPCAAPPMASIGAGSTPLHYA 201

Query: 58  ARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLK 117
           A GG + C + L++ GADR   + +G +P   A          +L+P S  P+    P  
Sbjct: 202 ACGGEVKCCQILVSRGADRTAINCNGWLPIDAARIWGCNWLEHVLSPKSHLPIPKFPPSG 261

Query: 118 FISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCC 177
           ++S   Q   +L+  A       RE+ +   +  S            D   E +D   C 
Sbjct: 262 YLS---QPLPSLIAIA-------REQGLNLSSEVS------------DGFDEGADA--CA 297

Query: 178 ICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA 229
           +C E+ CT+  + C H++C +C + LC   K   +        CP CR+ IA
Sbjct: 298 VCLERPCTVAAEGCDHELCVKCAMDLCSVIKSYDSAGIAGEIPCPLCRTGIA 349

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 99/235 (42%), Gaps = 39/235 (16%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPL 54
           G  + VN +   G TPLH+AA     ECV +LLD GA V  +T   G        GSTPL
Sbjct: 169 GLFKMVNQKADGGLTPLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPL 228

Query: 55  HLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK-HKHGACAALLNPASAEPLVWP 113
           H AA GG+  C + L+A GA    ++ SG  P  VA   H++          S E ++  
Sbjct: 229 HYAACGGNAVCCQLLIARGASLSAQNASGWTPLMVARSWHRN----------SLEEILSK 278

Query: 114 SPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDT 173
            P   I  +      L   ++M   +E       G  Y   SP   D             
Sbjct: 279 EPESRIRTVPSPYLCLPLMSIMSIARE------FGWRYLNQSPVCIDP------------ 320

Query: 174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
             C +C E  C++  + C H+ C +C L LC  +  + + A   P  CP CR  I
Sbjct: 321 --CAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTSVSPAGAIP--CPLCRHPI 371

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q54BA2|Y3800_DICDI Ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 OS=Dictyostelium discoideum GN=DDB_G0293800 PE=4 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 53/97 (54%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +DG    PLH AA     E V +LL+ GALV  ST      G+TPLH A+RGG I+C
Sbjct: 28  VNQKDGSNRYPLHYAAIGGYIEIVAMLLERGALVNCSTPR----GATPLHYASRGGRIEC 83

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           I+ L+   AD   RD +G  P   AL+     CA  L
Sbjct: 84  IQLLIDNKADVNCRDGAGSTPLHTALQCNETKCAIAL 120

Dictyostelium discoideum (taxid: 44689)

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 95/232 (40%), Gaps = 48/232 (20%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLHLAARGGSIDCI 66
           G TPLH+AA     E V +LLD GA V   T   G        GST LH A+ GG+  C 
Sbjct: 178 GITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCC 237

Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV----WPSP---LKFI 119
           + L++ GA     + +G  P  VA          +LNP + +P +     PSP   L  +
Sbjct: 238 QLLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTEQPQLHLPNVPSPFLCLPLM 297

Query: 120 SELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCIC 179
           S +N          + +    RE                     +D ++   D   C +C
Sbjct: 298 SIVN----------IAQECGWRE---------------------NDCLTPCRDP--CAVC 324

Query: 180 FEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPV--CPFCRSTIA 229
            E+ CT+    C H+ C  C L L   +  +  T+ +TP    CP CR+ I 
Sbjct: 325 LERKCTVAADGCAHEFCTNCALYLSTTSITSSKTSNVTPGSVPCPLCRNGIV 376

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
224059502	442	predicted protein [Populus trichocarpa]	0.976	0.658	0.872	1e-154
225434974	445	PREDICTED: putative E3 ubiquitin-protein	0.996	0.667	0.876	1e-154
224106497	447	predicted protein [Populus trichocarpa]	0.996	0.664	0.838	1e-149
225434976	438	PREDICTED: putative E3 ubiquitin-protein	0.973	0.662	0.856	1e-148
365222866	446	Hop-interacting protein THI012 [Solanum	0.986	0.659	0.802	1e-139
356558143	444	PREDICTED: putative E3 ubiquitin-protein	0.989	0.664	0.807	1e-138
356550271	444	PREDICTED: putative E3 ubiquitin-protein	0.989	0.664	0.811	1e-137
62869545	445	ring zinc finger protein [Artemisia dese	0.983	0.658	0.777	1e-134
356541240	447	PREDICTED: putative E3 ubiquitin-protein	0.996	0.664	0.803	1e-134
186503895	442	putative E3 ubiquitin-protein ligase XBA	0.989	0.667	0.764	1e-134

>gi|224059502|ref|XP_002299878.1| predicted protein [Populus trichocarpa] gi|222847136|gb|EEE84683.1| predicted protein [Populus trichocarpa]

 Score =  551 bits (1419), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/297 (87%), Positives = 279/297 (93%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           GY RFVNIRDGRGATPLHLAARQRRPECVHILLD+GALVC+STGGYG PG+TPLHLAARG
Sbjct: 145 GYTRFVNIRDGRGATPLHLAARQRRPECVHILLDNGALVCSSTGGYGSPGTTPLHLAARG 204

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADR+ RD SGRIPY VALK+++G CAALLNP+SAEPLVWPSPLKFIS
Sbjct: 205 GSLDCIRELLAWGADRMQRDASGRIPYVVALKYRNGTCAALLNPSSAEPLVWPSPLKFIS 264

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELNQEAKALLE ALMEAN+EREKNILKGT YSLPSPSHSD G DDNISEASDTELCCICF
Sbjct: 265 ELNQEAKALLECALMEANREREKNILKGTGYSLPSPSHSDDGTDDNISEASDTELCCICF 324

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           EQVCTIEV+DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA LVV K+++  
Sbjct: 325 EQVCTIEVEDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIARLVVAKMKDCN 384

Query: 241 DADRDIGDISSPKLRKARKSRNFSEGSSSFKGLSTSFSKMGGRGSGRIAAENEWIDK 297
           DAD+DIGD+ SPKLRK+R+S NFSEGSSSFKGLS +F KMGGRGSGRIAAENEW+DK
Sbjct: 385 DADQDIGDVGSPKLRKSRRSLNFSEGSSSFKGLSATFGKMGGRGSGRIAAENEWVDK 441

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434974|ref|XP_002283965.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 isoform 1 [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 262/299 (87%), Positives = 278/299 (92%), Gaps = 2/299 (0%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVNIRDGRGATPLHLAARQRRP+CVHILLD+GALVCASTGGYGCPGSTPLHLAARG
Sbjct: 146 GFARFVNIRDGRGATPLHLAARQRRPDCVHILLDNGALVCASTGGYGCPGSTPLHLAARG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADRL RD SGRIPY VALKHKHGACAALLNP SAEPLVWPSPLKFIS
Sbjct: 206 GSLDCIRELLAWGADRLQRDSSGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELNQ+AKALLE ALMEAN+EREK+ILKGT+YSLPSPSHSDV  DDNISEAS+TELCCICF
Sbjct: 266 ELNQDAKALLEQALMEANREREKSILKGTSYSLPSPSHSDVAVDDNISEASETELCCICF 325

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           +QVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLT PVCPFCRS IA L V KI+   
Sbjct: 326 DQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTAPVCPFCRSGIARLAVAKIKTNN 385

Query: 241 DADRDIGDISSPKLRKARKSRNFSEGSSSFKGLST--SFSKMGGRGSGRIAAENEWIDK 297
           +AD D+GD+SS KLR++RKSRN SEGSSSFKGLS   SFSKMGGRGSGRIAAENEWIDK
Sbjct: 386 EADSDVGDVSSSKLRRSRKSRNLSEGSSSFKGLSAVGSFSKMGGRGSGRIAAENEWIDK 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106497|ref|XP_002314186.1| predicted protein [Populus trichocarpa] gi|222850594|gb|EEE88141.1| predicted protein [Populus trichocarpa]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/309 (83%), Positives = 274/309 (88%), Gaps = 12/309 (3%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           GYARFVNIRDGRGATPLHLAARQRRP CVHILL +GALVC+STGGYG PGSTPLHLAARG
Sbjct: 138 GYARFVNIRDGRGATPLHLAARQRRPGCVHILLGNGALVCSSTGGYGSPGSTPLHLAARG 197

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIR LLAWGADRL RD SGRIPY VALKHK+G CAALLNP+SAEPLVWPSPLKFIS
Sbjct: 198 GSLDCIRALLAWGADRLQRDASGRIPYVVALKHKNGMCAALLNPSSAEPLVWPSPLKFIS 257

Query: 121 ELNQEAKALLE------------NALMEANKEREKNILKGTAYSLPSPSHSDVGADDNIS 168
           ELNQEAKALLE            N LMEAN+EREKNILKG+ +SLPSPSHS  G D NIS
Sbjct: 258 ELNQEAKALLECALMEANREREKNILMEANREREKNILKGSGHSLPSPSHSADGTDYNIS 317

Query: 169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
           EASDTE+CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACL PPVCPFCRSTI
Sbjct: 318 EASDTEVCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLNPPVCPFCRSTI 377

Query: 229 AHLVVVKIENQEDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLSTSFSKMGGRGSGRI 288
             LVV KI+N  DAD+DIG+I SPKLRK+RKSRNFSEGSSSFKGLS +F KMGGRGSGRI
Sbjct: 378 VRLVVAKIKNCNDADQDIGEIGSPKLRKSRKSRNFSEGSSSFKGLSATFGKMGGRGSGRI 437

Query: 289 AAENEWIDK 297
           AAENEW+DK
Sbjct: 438 AAENEWMDK 446

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434976|ref|XP_002283974.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 isoform 2 [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/299 (85%), Positives = 272/299 (90%), Gaps = 9/299 (3%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVNIRDGRGATPLHLAARQRRP+CVHILLD+GALVCASTGGYGCPGSTPLHLAARG
Sbjct: 146 GFARFVNIRDGRGATPLHLAARQRRPDCVHILLDNGALVCASTGGYGCPGSTPLHLAARG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADRL RD SGRIPY VALKHKHGACAALLNP SAEPLVWPSPLKFIS
Sbjct: 206 GSLDCIRELLAWGADRLQRDSSGRIPYVVALKHKHGACAALLNPTSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELNQ+AKALLE ALMEAN+EREK+ILKGT+YSLPSPSHSDV        AS+TELCCICF
Sbjct: 266 ELNQDAKALLEQALMEANREREKSILKGTSYSLPSPSHSDVA-------ASETELCCICF 318

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           +QVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLT PVCPFCRS IA L V KI+   
Sbjct: 319 DQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTAPVCPFCRSGIARLAVAKIKTNN 378

Query: 241 DADRDIGDISSPKLRKARKSRNFSEGSSSFKGLST--SFSKMGGRGSGRIAAENEWIDK 297
           +AD D+GD+SS KLR++RKSRN SEGSSSFKGLS   SFSKMGGRGSGRIAAENEWIDK
Sbjct: 379 EADSDVGDVSSSKLRRSRKSRNLSEGSSSFKGLSAVGSFSKMGGRGSGRIAAENEWIDK 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365222866|gb|AEW69785.1| Hop-interacting protein THI012 [Solanum lycopersicum]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 240/299 (80%), Positives = 259/299 (86%), Gaps = 5/299 (1%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           GYARFVN+RDG+GATPLHLAARQRRPECVHILLD+GALVCASTGGYG PGSTPLHLAARG
Sbjct: 146 GYARFVNVRDGKGATPLHLAARQRRPECVHILLDNGALVCASTGGYGFPGSTPLHLAARG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADRLHRD +GRIPY VAL++ HGACAALLNP+SAEPLVWPSPLKFIS
Sbjct: 206 GSLDCIRELLAWGADRLHRDSTGRIPYTVALRYHHGACAALLNPSSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           +LN EAKALLE ALMEANKEREKNILKGT YS PSPS SD G DDN+SE SDTE+CCICF
Sbjct: 266 QLNDEAKALLERALMEANKEREKNILKGTDYSPPSPSQSDAGMDDNMSEVSDTEVCCICF 325

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           +Q+CTIEVQDCGHQMCA C LALCCHNKPNPTT     PVCPFCRS I  L  +K+    
Sbjct: 326 DQLCTIEVQDCGHQMCAHCVLALCCHNKPNPTTTSPPEPVCPFCRSNIVQLQAIKVTKNN 385

Query: 241 DADRDIGDISSPKLRKARKSRNFSEGSSSFKGLS--TSFSKMGGRGSGRIAAENEWIDK 297
           D D    D+ S KLRK R+SRNFSEGSSSFKGLS  +SF KM GRGSGRIAA+NEWIDK
Sbjct: 386 DTD---SDLHSSKLRKTRRSRNFSEGSSSFKGLSAVSSFGKMTGRGSGRIAADNEWIDK 441

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356558143|ref|XP_003547367.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 244/302 (80%), Positives = 268/302 (88%), Gaps = 7/302 (2%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G++RFVNIRDG+GATPLHLAARQRR ECVHILLDSGALVCASTGGYGCPGSTPLHLAARG
Sbjct: 146 GFSRFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GSIDCIRELLAWGADRL RD SGRIPY VALKHKHGACA+LLNP SAEPLVWPSPLKFIS
Sbjct: 206 GSIDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELN EAKALLE ALM+AN+EREKNILKG++YSLPSPSHSD G  DN+SE S++ELCCICF
Sbjct: 266 ELNPEAKALLEQALMDANREREKNILKGSSYSLPSPSHSD-GVADNMSEVSESELCCICF 324

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           EQVCTIEVQ+CGHQMCAQCTLALCCHNKPNP TACLTPPVCPFCRSTI  LVVVK E  +
Sbjct: 325 EQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHD 384

Query: 241 DADRDIGDISSPKLRK-ARKSRNFSE-GSSSFKGLS--TSFSKMGGRGSGRIAAENEWID 296
           + D+D  DI+  KL K +RK R+ ++ GSSSFKGLS  +SF K+G R SGRIAA  EW+D
Sbjct: 385 ETDQDSADINCSKLSKSSRKLRHLNDSGSSSFKGLSSVSSFGKLGSRSSGRIAA--EWLD 442

Query: 297 KR 298
           K+
Sbjct: 443 KQ 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550271|ref|XP_003543511.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]

 Score =  495 bits (1274), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 245/302 (81%), Positives = 267/302 (88%), Gaps = 7/302 (2%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVNIRDG+GATPLHLAARQRR ECVHILLDSGALVCASTGGYGCPGSTPLHLAARG
Sbjct: 146 GFARFVNIRDGKGATPLHLAARQRRSECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADRL RD SGRIPY VALKHKHGACA+LLNP SAEPLVWPSPLKFIS
Sbjct: 206 GSLDCIRELLAWGADRLQRDASGRIPYMVALKHKHGACASLLNPTSAEPLVWPSPLKFIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELN EAKALLE ALM+AN+EREKNILKG++YSLPSPSHSD G  DN SE S++ELCCICF
Sbjct: 266 ELNPEAKALLEQALMDANREREKNILKGSSYSLPSPSHSD-GVADNTSEVSESELCCICF 324

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           EQVCTIEVQ+CGHQMCAQCTLALCCHNKPNP TACLTPPVCPFCRSTI  LVVVK E  +
Sbjct: 325 EQVCTIEVQNCGHQMCAQCTLALCCHNKPNPATACLTPPVCPFCRSTITRLVVVKTECHD 384

Query: 241 DADRDIGDISSPKLRK-ARKSRNFSE-GSSSFKGLS--TSFSKMGGRGSGRIAAENEWID 296
           + D+D  DI+  KL K +RK RN ++ GSSSFKGLS  +SF K+G R SGRIAA  EW+D
Sbjct: 385 ETDQDSVDINCSKLSKSSRKLRNLNDIGSSSFKGLSSVSSFGKLGSRSSGRIAA--EWLD 442

Query: 297 KR 298
           K+
Sbjct: 443 KQ 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62869545|gb|AAY17949.1| ring zinc finger protein [Artemisia desertorum]

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 230/296 (77%), Positives = 260/296 (87%), Gaps = 3/296 (1%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G++RFVNIRDG+GATPLHLAARQRRPECVHILLDSGALVCASTGGYG PGSTPLHLAARG
Sbjct: 148 GFSRFVNIRDGKGATPLHLAARQRRPECVHILLDSGALVCASTGGYGLPGSTPLHLAARG 207

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DC+RELLAWGADRLHRD SGRIPYAVALKH +G CAALLNP+SAEPLVWPSPLKFIS
Sbjct: 208 GSMDCVRELLAWGADRLHRDASGRIPYAVALKHNYGVCAALLNPSSAEPLVWPSPLKFIS 267

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSD-VGADDNISEASDTELCCIC 179
           ELNQ+AKALLE ALME N+ERE++ILKGT YS+ SPSHSD  G DDNISEASD++LCCIC
Sbjct: 268 ELNQDAKALLEQALMEINRERERSILKGTGYSVSSPSHSDATGMDDNISEASDSQLCCIC 327

Query: 180 FEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ 239
           F+Q+C IEVQDCGHQMCAQCTLALCCH+KPNPTT+ L  P+CPFCRS I  L V+K++  
Sbjct: 328 FDQLCAIEVQDCGHQMCAQCTLALCCHDKPNPTTSALAAPICPFCRSNIERLAVIKVK-A 386

Query: 240 EDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLS-TSFSKMGGRGSGRIAAENEW 294
              D+ +   SSPK RK+R+S N SEGSSSF+GLS  SF KM GRGSGR++A+ EW
Sbjct: 387 STVDQGLDVFSSPKQRKSRRSINLSEGSSSFRGLSGASFGKMVGRGSGRVSADLEW 442

Source: Artemisia desertorum

Species: Artemisia desertorum

Genus: Artemisia

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541240|ref|XP_003539087.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT31-like [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 242/301 (80%), Positives = 262/301 (87%), Gaps = 4/301 (1%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           G+ARFVNIRDGRGATPLHLAARQRRPECVHILL SGALV ASTG YGCPGSTPLHLAA+G
Sbjct: 146 GFARFVNIRDGRGATPLHLAARQRRPECVHILLYSGALVSASTGRYGCPGSTPLHLAAKG 205

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GS+DCIRELLAWGADRL RD SGRIPY VALKH+HGACAALLN +SAEPLVWPS LK IS
Sbjct: 206 GSLDCIRELLAWGADRLQRDASGRIPYVVALKHRHGACAALLNLSSAEPLVWPSSLKIIS 265

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELN +AK LLE ALM+AN+EREKNILKG+ YSLPSPSHSD G DDNISE S+TELCCICF
Sbjct: 266 ELNPDAKELLERALMDANREREKNILKGSDYSLPSPSHSD-GVDDNISEVSETELCCICF 324

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
           EQVCTIEVQDCGHQMCAQCTLALCCHNKPNP T+ + PPVCPFCRSTIA LVVVK E+ +
Sbjct: 325 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPCTSRVIPPVCPFCRSTIARLVVVKKESPD 384

Query: 241 DADRDIGDISSPKLRKARKSRNFSE-GSSSFKGLS--TSFSKMGGRGSGRIAAENEWIDK 297
           D D+D  DI+  K  K+RKSRN +E GSSS KGLS   SF KMGGR SG+IAAENEW D 
Sbjct: 385 DIDQDGVDITCSKHSKSRKSRNSNEGGSSSIKGLSNVNSFGKMGGRSSGKIAAENEWEDD 444

Query: 298 R 298
           +
Sbjct: 445 K 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186503895|ref|NP_001118406.1| putative E3 ubiquitin-protein ligase XBAT31 [Arabidopsis thaliana] gi|330253086|gb|AEC08180.1| putative E3 ubiquitin-protein ligase XBAT31 [Arabidopsis thaliana]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 260/310 (83%), Gaps = 15/310 (4%)

Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           GYARFVNIRD +GATPLHLAARQRRPECV++LLDSG+LVCAST  YG PGSTPLHLAAR 
Sbjct: 132 GYARFVNIRDDKGATPLHLAARQRRPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAARS 191

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
           GSIDC+R+LLAWGADRL RD SGRIPY VA+KHKHGAC ALLNP+SAEPLVWPSPLKFIS
Sbjct: 192 GSIDCVRKLLAWGADRLQRDASGRIPYVVAMKHKHGACGALLNPSSAEPLVWPSPLKFIS 251

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           ELN EAK LLE ALMEAN+EREK ILKGTAYSLPSPS SD   DDN+SE SDTELCCICF
Sbjct: 252 ELNDEAKLLLEQALMEANREREKTILKGTAYSLPSPSFSD--TDDNMSEVSDTELCCICF 309

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK----- 235
           EQVCTIEV+DCGHQMCAQCTLALCCHNKPNPTT+ +TPPVCPFCRSTIA LVV +     
Sbjct: 310 EQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTTSTVTPPVCPFCRSTIACLVVAQNNNNN 369

Query: 236 ------IENQEDADRDIGDISSPKLRKARKSRNFSEGSSSFKGLST--SFSKMGGRGSGR 287
                 +++    DR+ GD+SS K RK R+S N  E SSSF GLST  SF ++ GRGSGR
Sbjct: 370 NEKSKSLDDVVVVDREAGDVSSSKFRKHRRSINLGEESSSFMGLSTIGSFGRITGRGSGR 429

Query: 288 IAAENEWIDK 297
           IAAENE +DK
Sbjct: 430 IAAENELMDK 439

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	298
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.989	0.646	0.732	1.6e-118
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.976	0.646	0.645	3.1e-99
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.365	0.214	0.364	1.9e-12
TAIR|locus:2142783	175	PIA1 "AT5G07840" [Arabidopsis	0.338	0.577	0.403	1.8e-08
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.345	0.200	0.405	2.3e-08
DICTYBASE|DDB_G0293800	806	DDB_G0293800 "BRD family prote	0.332	0.122	0.432	2.7e-08
DICTYBASE|DDB_G0287459	986	secG "Arf guanyl-nucleotide ex	0.325	0.098	0.356	7.7e-08
ZFIN|ZDB-GENE-061013-49	356	ankrd10b "ankyrin repeat domai	0.305	0.255	0.45	1.3e-07
UNIPROTKB|Q86SG2	305	ANKRD23 "Ankyrin repeat domain	0.308	0.301	0.375	7.6e-07
ZFIN|ZDB-GENE-030131-5411	289	asb8 "ankyrin repeat and SOCS	0.285	0.294	0.408	8.6e-07

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1167 (415.9 bits), Expect = 1.6e-118, P = 1.6e-118
 Identities = 227/310 (73%), Positives = 247/310 (79%)

Query:     1 GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
             GYARFVNIRD +GATPLHLAARQRRPECV++LLDSG+LVCAST  YG PGSTPLHLAAR 
Sbjct:   146 GYARFVNIRDDKGATPLHLAARQRRPECVNVLLDSGSLVCASTSVYGSPGSTPLHLAARS 205

Query:    61 GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
             GSIDC+R+LLAWGADRL RD SGRIPY VA+KHKHGAC ALLNP+SAEPLVWPSPLKFIS
Sbjct:   206 GSIDCVRKLLAWGADRLQRDASGRIPYVVAMKHKHGACGALLNPSSAEPLVWPSPLKFIS 265

Query:   121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
             ELN EAK LLE ALMEAN+EREK ILKGTAYSLPSPS SD   DDN+SE SDTELCCICF
Sbjct:   266 ELNDEAKLLLEQALMEANREREKTILKGTAYSLPSPSFSDT--DDNMSEVSDTELCCICF 323

Query:   181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE 240
             EQVCTIEV+DCGHQMCAQCTLALCCHNKPNPTT+ +TPPVCPFCRSTIA LVV +  N  
Sbjct:   324 EQVCTIEVKDCGHQMCAQCTLALCCHNKPNPTTSTVTPPVCPFCRSTIACLVVAQNNNNN 383

Query:   241 D-----------ADRDIGDISSPKLRKARKSRNXXXXXXXXXXXXXXXXX--MGGRGSGR 287
             +            DR+ GD+SS K RK R+S N                   + GRGSGR
Sbjct:   384 NEKSKSLDDVVVVDREAGDVSSSKFRKHRRSINLGEESSSFMGLSTIGSFGRITGRGSGR 443

Query:   288 IAAENEWIDK 297
             IAAENE +DK
Sbjct:   444 IAAENELMDK 453

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
 Identities = 197/305 (64%), Positives = 227/305 (74%)

Query:     1 GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
             G+ARFVN+RD  GATPLHLAARQ RP CV +LL++GA+V A TG YG PGST LHLAAR 
Sbjct:   147 GFARFVNVRDDHGATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARS 206

Query:    61 GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFIS 120
             G++DCIR+LLAWGADRL RD +GRIPY+VALK  HGACAALLNP SAEP+VWPSPLKFIS
Sbjct:   207 GNLDCIRKLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFIS 266

Query:   121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNI-SEASDTELCCIC 179
             EL  EAKALLE ALMEAN+EREK IL GT YSLPSPS  D  ADD+  SE SDTELCCIC
Sbjct:   267 ELEPEAKALLEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCIC 326

Query:   180 FEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPP--VCPFCRSTIAHLVVVKIE 237
             F+Q CTIEVQDCGHQMCA CTLALCCHNKPNPTT  LTPP   CPFCR +I+ LVV +  
Sbjct:   327 FDQACTIEVQDCGHQMCAPCTLALCCHNKPNPTT--LTPPSPACPFCRGSISRLVVAQTR 384

Query:   238 NQEDADRDIGDISSPKL--RKARKSRNXXXXXXXXXXXXXXXXXMG--GRGSGRIA-AEN 292
             +  D D+     SS +L  +++R+S N                     GRGS R+A +++
Sbjct:   385 SACDPDKP----SSLQLTRKRSRRSHNLSEGSSSFKGLPSAMGSFSKLGRGSSRMADSDS 440

Query:   293 EWIDK 297
               +DK
Sbjct:   441 SNLDK 445

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
 Identities = 43/118 (36%), Positives = 57/118 (48%)

Query:    10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLHLAARGGSI 63
             DG G TPLH+AA     E V +LLD GA V   T   G        GST LH A+ GG+ 
Sbjct:   176 DG-GITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNT 234

Query:    64 DCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP-LVWPS-PLKFI 119
              C + L++ GA     + +G  P  VA          +LNP + +P L  P+ P  F+
Sbjct:   235 QCCQLLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTEQPQLHLPNVPSPFL 292

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2142783 PIA1 "AT5G07840" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 42/104 (40%), Positives = 53/104 (50%)

Query:     9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
             RD RG T LH+ AR+   + V  LLD GA V A   G    G TPLHLAA+GG I+ +  
Sbjct:    27 RDDRGWTQLHIKAREGDLKAVKELLDQGADVNALACGPKSKGMTPLHLAAKGGHIEVMDL 86

Query:    69 LLAWGADRLHRD--VSGRIP-YAVALKHKHGACAALLNPASAEP 109
             LL  GA+   R     G  P +A A + K  A   L+   +  P
Sbjct:    87 LLERGANMEARTSGACGWTPLHAAAKERKREAVKFLVGNGAFLP 130

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 45/111 (40%), Positives = 60/111 (54%)

Query:     3 ARFVN-IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------GSTPLH 55
             ++FVN   DG G T LH+AA     +CV +LLD  A V A T  YG        GSTPLH
Sbjct:   162 SKFVNKAADG-GITALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLH 220

Query:    56 LAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
              AA GG++ C + LLA GA ++  + +G +P  +A          LL+P S
Sbjct:   221 YAACGGNLKCCQILLARGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNS 271

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

DICTYBASE|DDB_G0293800 DDB_G0293800 "BRD family protein kinase DDB_G0293800" [Dictyostelium discoideum (taxid:44689)]

 Score = 156 (60.0 bits), Expect = 2.7e-08, P = 2.7e-08
 Identities = 45/104 (43%), Positives = 57/104 (54%)

Query:     6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             VN +DG    PLH AA     E V +LL+ GALV  ST      G+TPLH A+RGG I+C
Sbjct:    28 VNQKDGSNRYPLHYAAIGGYIEIVAMLLERGALVNCSTPR----GATPLHYASRGGRIEC 83

Query:    66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACA-ALLNPASAE 108
             I+ L+   AD   RD +G  P   AL+     CA AL+    A+
Sbjct:    84 IQLLIDNKADVNCRDGAGSTPLHTALQCNETKCAIALIETFGAD 127

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0287459 secG "Arf guanyl-nucleotide exchange factor" [Dictyostelium discoideum (taxid:44689)]

 Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 36/101 (35%), Positives = 49/101 (48%)

Query:     2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
             Y   +NI+D  GATPLH A+      C  +L+D GA +C         G+TPLH AA  G
Sbjct:   357 YKAQINIKDEEGATPLHKASFNGHSSCAKLLVDKGAPICIVDS----QGATPLHKAAFNG 412

Query:    62 SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
                C+  L+  GA+   +D  G  P   A  + H  C  +L
Sbjct:   413 RSKCLATLIRSGAELEVKDSQGGTPLHNAAYNGHSDCCRIL 453

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005764 "lysosome" evidence=IDA

GO:0032012 "regulation of ARF protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005086 "ARF guanyl-nucleotide exchange factor activity" evidence=IEA

ZFIN|ZDB-GENE-061013-49 ankrd10b "ankyrin repeat domain 10b" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 45/100 (45%), Positives = 53/100 (53%)

Query:     6 VNIRDGRGA-TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
             VN    R A TP H+AA    P+C+  LL +GA +  +   Y   G TPLH AAR GS D
Sbjct:    78 VNTMTSRFAQTPAHIAAFGGHPQCLLWLLQNGADI--NRQDY--VGETPLHKAARAGSTD 133

Query:    65 CIRELLAWGADRLHRDVSGRIPYAVALKHKHG--ACAALL 102
             CI  LL  GA    R+ SG +P A  L H  G   CA LL
Sbjct:   134 CINTLLLQGAKTDMRNASG-LP-AADLAHAQGFQECAQLL 171

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q86SG2 ANKRD23 "Ankyrin repeat domain-containing protein 23" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 36/96 (37%), Positives = 51/96 (53%)

Query:     6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             VN RD  G+TPLH+A R R P+C+  L++ GA + A        G T LH A R GS   
Sbjct:   203 VNARDKIGSTPLHVAVRTRHPDCLEHLIECGAHLNAQDK----EGDTALHEAVRHGSYKA 258

Query:    66 IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAAL 101
             ++ LL +GA+   R+ +   P  +A   + G   AL
Sbjct:   259 MKLLLLYGAELGVRNAASVTPVQLARDWQRGIREAL 294

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0031674 "I band" evidence=IEA

GO:0031432 "titin binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

ZFIN|ZDB-GENE-030131-5411 asb8 "ankyrin repeat and SOCS box-containing 8" [Danio rerio (taxid:7955)]

 Score = 136 (52.9 bits), Expect = 8.6e-07, P = 8.6e-07
 Identities = 38/93 (40%), Positives = 51/93 (54%)

Query:     2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
             Y    N  DG   TPLH AA +  PECV  LL+SGA  C +   Y     TPL  AA  G
Sbjct:   107 YGAHPNALDGNKDTPLHWAAFKDNPECVRALLESGA--CPNVRDYN--NDTPLSWAAMKG 162

Query:    62 SIDCIRELLAWGADRLH-RDVSGRIPYA--VAL 91
             +++ +R LL +GA  +H  ++ G+ P +  VAL
Sbjct:   163 NLESVRVLLEYGA-LVHVTNLKGQTPISRLVAL 194

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q65XV2	XB3_ORYSJ	6, ., 3, ., 2, ., -	0.6809	0.9798	0.6488	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_I1758 SubName- Full=Putative uncharacterized protein; (442 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	298
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-07
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-06
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	6e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-05
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	5e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
smart00248	30	smart00248, ANK, ankyrin repeats	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	7e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	0.001
smart00248	30	smart00248, ANK, ankyrin repeats	0.002
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.1 bits (211), Expect = 1e-20
 Identities = 45/97 (46%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAA+    E V +LL+ GA V A        G+TPLHLAAR G++D 
Sbjct: 33  VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD----KDGNTPLHLAARNGNLDV 88

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL  GAD   RD  GR P  +A K+ H     LL
Sbjct: 89  VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N RD  G TPLHLAA     E V +LL++GA V A        G TPLHLAA+ G ++ +
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKD----NDGRTPLHLAAKNGHLEIV 56

Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           + LL  GAD   RD  G  P  +A ++ +     LL
Sbjct: 57  KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN RD  G TPLHLAAR    + V +LL  GA V A        G TPLHLAA+ G ++ 
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD----KDGRTPLHLAAKNGHLEV 121

Query: 66  IRELL 70
           ++ LL
Sbjct: 122 VKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.5 bits (163), Expect = 4e-14
 Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++  G   T LHLAAR    E V +LL+ GA V A        G+T LHLAAR G+++ 
Sbjct: 21 ADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD----GNTALHLAARNGNLEI 76

Query: 66 IRELLAWGADRLHRD 80
          ++ LL  GAD   +D
Sbjct: 77 VKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 6/86 (6%)

Query: 17  LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR 76
           LHLAA+    E V +LL+ GA V            T LHLAAR G+++ ++ LL  GAD 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD------TALHLAARNGNLEIVKLLLEHGADV 54

Query: 77  LHRDVSGRIPYAVALKHKHGACAALL 102
             +D  G     +A ++ +     LL
Sbjct: 55  NAKDKDGNTALHLAARNGNLEIVKLL 80

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 42/114 (36%), Positives = 51/114 (44%), Gaps = 12/114 (10%)

Query: 4   RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS- 62
           R +  RD  G  PLH AA +   + V +LL SGA V A        G TPLHLAA  G+ 
Sbjct: 64  RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA----DGDTPLHLAALNGNP 119

Query: 63  ----IDCIRELLAWGADR---LHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
               I+  + LL  GAD      RD  G  P   A  +       LL  A A+P
Sbjct: 120 PEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADP 173

Length = 235

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 37/106 (34%), Positives = 44/106 (41%), Gaps = 14/106 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRP-----ECVHILLDSGA----LVCASTGGYGCPGSTPLHL 56
           VN +D  G TPLHLAA    P     E   +LL++GA           G      TPLH 
Sbjct: 99  VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN-----TPLHW 153

Query: 57  AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           AA  G  D +  LL  GAD   R+  G      A K+       LL
Sbjct: 154 AALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 51.9 bits (124), Expect = 1e-07
 Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 4/105 (3%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           Y   VNI D  G  P+H+A +    + + +LL+ GA   A+       G +PLH AA  G
Sbjct: 146 YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY--ANVKDNN--GESPLHNAAEYG 201

Query: 62  SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
              CI+ L+  G   +++  +G  P   A+ H   A   L+N AS
Sbjct: 202 DYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNAS 246

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
          T LH AA   R E V  LL+ G  +  +       G+T LH+AA  G+++ ++ LL
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDED----GNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 32 LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90
          LL+ G +   +T G G   +TPLHLAA+ G+++ ++ LL  G D   RD  G     +A
Sbjct: 1  LLEHGPIDLNATDGNG---NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRD 80
          G+TPLHLAAR G ++ ++ LL  GAD   RD
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
           + +LC IC E+   +    CGH  +C +C   L    K            CP CR  I
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKK------------CPICRQPI 46

Length = 49

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +NI+D  G TPLH A     PE V  LLD GA            G TPLH+A    + + 
Sbjct: 185 INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN----KYGDTPLHIAILNNNKEI 240

Query: 66  IRELLAWGAD 75
            + LL  G  
Sbjct: 241 FKLLLNNGPS 250

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.8 bits (99), Expect = 7e-06
 Identities = 17/31 (54%), Positives = 20/31 (64%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCAST 43
          G TPLHLAAR    E V +LL++GA V A  
Sbjct: 2  GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 6   VNIRDGRGATPLHLAAR-QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN  +  G TPLHL        + + +L+ +GA V A     G    TPLH+   G +I+
Sbjct: 76  VNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAK-DKVG---RTPLHVYLSGFNIN 131

Query: 65  --CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
              IR LL  GAD    D+ G  P AV LK    A   LL 
Sbjct: 132 PKVIRLLLRKGADVNALDLYGMTPLAVLLK-SRNANVELLR 171

Length = 471

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 12  RGATPLHLAARQRRPECVHILLDSGALV--------CASTGGYGC--PGSTPLHLAARGG 61
            G T LHLAA ++  E V +LL+ GA V           + G      G +PL+ AA  G
Sbjct: 127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLG 186

Query: 62  SIDCIRELLAWGADRLHRD 80
           S   +  L    AD L  D
Sbjct: 187 SPSIVALLSEDPADILTAD 205

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 5/75 (6%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLA-ARG 60
           Y   VNI D    +PLH A +      VHILL++G    AST      G+TPLH++    
Sbjct: 190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG----ASTDARDKCGNTPLHISVGYC 245

Query: 61  GSIDCIRELLAWGAD 75
              D ++ LL  G D
Sbjct: 246 KDYDILKLLLEHGVD 260

Length = 477

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 17/109 (15%)

Query: 156 PSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTAC 215
           P+ +   ADD      +   C IC           CGHQ+C  C + L          A 
Sbjct: 47  PNLTTSSADD---TDEENMNCQICAGSTTYSARYPCGHQICHACAVRL---------RAL 94

Query: 216 LTPPVCPFCRSTIAHLVVVKIENQEDADRDIGDISSPKLRKARKSRNFS 264
                CP CR+    +V         +  DI D    K R+ +    + 
Sbjct: 95  YMQKGCPLCRTETEAVVFTA-----SSPADITDRRQWKGREEKVGIFYE 138

Length = 493

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 3e-04
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VNI+D    T LH A ++   E + +L + GA V          G  P+H+A +    D 
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN----GCYPIHIAIKHNFFDI 172

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           I+ LL  GA    +D +G  P   A ++   AC  LL
Sbjct: 173 IKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLL 209

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 16/122 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRP--ECVHILLDSGALVCASTG-----GYGCP-------GS 51
           VNI++  G   LHL     +   + + +L+D G  + A         YG P       G 
Sbjct: 134 VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGF 193

Query: 52  TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHKHGACAALLNPASAEP 109
           TPLH A    + + ++ LL  GA+    +  G  P   A+   +K      L N  S + 
Sbjct: 194 TPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253

Query: 110 LV 111
           ++
Sbjct: 254 II 255

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 6   VNIRDGRGATPLHLAAR---QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
           VN R   G TPLHL      ++  + V +LL++GA V A      C G TPLHL     +
Sbjct: 40  VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPE---RC-GFTPLHLYLYNAT 95

Query: 63  -IDCIRELLAWGADRLHRDVSGRIPYAVALK 92
            +D I+ L+  GAD   +D  GR P  V L 
Sbjct: 96  TLDVIKLLIKAGADVNAKDKVGRTPLHVYLS 126

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 50  GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           G T LH AA  G ++ ++ LL  G D    D  G     +A ++ +     LL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 15/26 (57%), Positives = 16/26 (61%)

Query: 12 RGATPLHLAARQRRPECVHILLDSGA 37
           G TPLHLAA     E V +LLD GA
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLA 57
          +N  DG G TPLHLAA+    E V  LL  G  +          G T L LA
Sbjct: 9  LNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD----GLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 7e-04
 Identities = 33/123 (26%), Positives = 46/123 (37%), Gaps = 27/123 (21%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSG------------ALVCASTGG--------Y 46
           +I D +G TPLH+AA +   +CV +LL               AL  A +          Y
Sbjct: 552 DIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY 611

Query: 47  GCPG-STP------LHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACA 99
                S P      L  AA+   +  ++ELL  G +    D  G     VA+   H    
Sbjct: 612 HFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMV 671

Query: 100 ALL 102
            LL
Sbjct: 672 RLL 674

Length = 823

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N+RD  G TPLH AA     + V +LL++GA    S   YG    T L  AA+ G I+ +
Sbjct: 141 NLRDEDGNTPLHWAALNGDADIVELLLEAGA-DPNSRNSYG---VTALDPAAKNGRIELV 196

Query: 67  RELLA 71
           + LL 
Sbjct: 197 KLLLD 201

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 43/175 (24%), Positives = 61/175 (34%), Gaps = 41/175 (23%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALV---C--------------------- 40
           + N++D  G +PLH AA      C+ +L+D G  +   C                     
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELL 241

Query: 41  ---ASTGGYGCPGSTPLHLAAR-GGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96
              AS       GSTPLH A      ID I  LL   AD   +D  G  P   A K+ + 
Sbjct: 242 INNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINK 301

Query: 97  --------ACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREK 143
                   A A L+  A            F+  +  +      + + E N+E E 
Sbjct: 302 DPVIKDIIANAVLIKEADKLK-----DSDFLEHIEIKDNKEFSDFIKECNEEIED 351

Length = 434

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 29  VHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA 88
             ILL  GA            G TPLH+A   G +  +R LL +GAD    D  G+ P  
Sbjct: 98  ARILLTGGA----DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLE 153

Query: 89  VALKHKHGACAALL 102
           +A ++       LL
Sbjct: 154 LAEENGFREVVQLL 167

Length = 664

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query: 50 GSTPLHLAARGGSIDCIRELL 70
          G TPLHLAA  G+++ ++ LL
Sbjct: 2  GRTPLHLAAENGNLEVVKLLL 22

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 30/108 (27%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 15  TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
           + LH A  +   + V  LLD G         +   G TPLHLA     +D ++ L+A GA
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFA---DDVFYKDGMTPLHLATILKKLDIMKLLIARGA 126

Query: 75  D----------RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVW 112
           D           LH  V       + L   H AC  + +     PL+ 
Sbjct: 127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLII 174

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.5 bits (90), Expect = 0.004
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 9   RDGRGATPLHLAARQRRPECVHI--LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
            D  G TPLH  A     +   +  LL +G  + A    YG    TPLH AA   +    
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA-RNRYG---QTPLHYAAVFNNPRAC 273

Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGAC-AALLN 103
           R L+A GAD       G  P ++ +++ +G    A L 
Sbjct: 274 RRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311

Length = 471

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGAD 75
          G+TPLHLAAR G+++ ++ LL  GAD
Sbjct: 2  GNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	298
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.91
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.91
PHA02791	284	ankyrin-like protein; Provisional	99.89
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.89
PHA02874	434	ankyrin repeat protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02741	169	hypothetical protein; Provisional	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA03095	471	ankyrin-like protein; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA02874	434	ankyrin repeat protein; Provisional	99.86
PHA02875	413	ankyrin repeat protein; Provisional	99.85
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.85
KOG0510	929	consensus Ankyrin repeat protein [General function	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.85
PHA02946	446	ankyin-like protein; Provisional	99.85
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0508	615	consensus Ankyrin repeat protein [General function	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.83
KOG0510	929	consensus Ankyrin repeat protein [General function	99.83
PHA02876	682	ankyrin repeat protein; Provisional	99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.82
PHA02946	446	ankyin-like protein; Provisional	99.82
PHA02989	494	ankyrin repeat protein; Provisional	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PHA02795	437	ankyrin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
KOG0508	615	consensus Ankyrin repeat protein [General function	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.8
PHA02741	169	hypothetical protein; Provisional	99.79
PHA02730	672	ankyrin-like protein; Provisional	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.79
PHA02730	672	ankyrin-like protein; Provisional	99.78
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
PHA02795	437	ankyrin-like protein; Provisional	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
PHA02917	661	ankyrin-like protein; Provisional	99.78
PHA02736	154	Viral ankyrin protein; Provisional	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.74
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.74
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.73
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.73
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.72
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.7
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.7
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.69
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.67
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.64
KOG0514	452	consensus Ankyrin repeat protein [General function	99.64
PHA02792	631	ankyrin-like protein; Provisional	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.62
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.61
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.58
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.58
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.56
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.49
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.48
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.47
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.42
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.38
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.37
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.33
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.32
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.24
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.19
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.0
PF13606	30	Ank_3: Ankyrin repeat	98.94
PF13606	30	Ank_3: Ankyrin repeat	98.94
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.92
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.91
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.89
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.82
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.8
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.8
KOG0522	560	consensus Ankyrin repeat protein [General function	98.74
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.72
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.68
KOG2384	223	consensus Major histocompatibility complex protein	98.61
KOG0522	560	consensus Ankyrin repeat protein [General function	98.58
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.57
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.52
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.51
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.48
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.39
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.37
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.34
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	98.32
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.32
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.29
KOG0511	516	consensus Ankyrin repeat protein [General function	98.26
KOG2384	223	consensus Major histocompatibility complex protein	98.25
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.19
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.18
PHA02929	238	N1R/p28-like protein; Provisional	98.07
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.06
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.02
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.0
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.99
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.96
KOG0511	516	consensus Ankyrin repeat protein [General function	97.93
KOG2505	591	consensus Ankyrin repeat protein [General function	97.87
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.85
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.85
PF14634	44	zf-RING_5: zinc-RING finger domain	97.85
PHA02926	242	zinc finger-like protein; Provisional	97.84
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	97.76
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	97.75
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.6
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.53
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.53
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.47
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.44
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.36
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.35
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.34
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.31
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.31
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.21
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.16
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.07
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.92
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	96.6
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	96.52
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.49
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	96.27
KOG2505	591	consensus Ankyrin repeat protein [General function	96.26
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.13
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.06
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	96.05
COG5152	259	Uncharacterized conserved protein, contains RING a	95.67
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	95.64
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.54
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	95.34
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.0
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	94.96
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	94.87
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	94.79
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	94.51
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	94.32
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.3
KOG1002	791	consensus Nucleotide excision repair protein RAD16	93.87
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	93.02
KOG4739	233	consensus Uncharacterized protein involved in syna	92.55
KOG0297	391	consensus TNF receptor-associated factor [Signal t	92.24
KOG0825	1134	consensus PHD Zn-finger protein [General function	92.19
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.73
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	91.06
KOG3002	299	consensus Zn finger protein [General function pred	90.66
KOG1001	674	consensus Helicase-like transcription factor HLTF/	90.54
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	90.51
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	89.66
COG5219	1525	Uncharacterized conserved protein, contains RING Z	89.08
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.97
COG5222	427	Uncharacterized conserved protein, contains RING Z	88.84
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	87.63
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	87.47
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	87.09
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.97
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	86.0
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	84.08
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	83.93
COG5175	480	MOT2 Transcriptional repressor [Transcription]	83.51
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	82.91
PF04641	260	Rtf2: Rtf2 RING-finger	82.76
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	82.75
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	81.83
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	81.31

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.7e-27  Score=187.60  Aligned_cols=127  Identities=30%  Similarity=0.303  Sum_probs=76.6

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      .+|-+|..||||||.|+..|+.++|+.|+.+ |+++|..++    .|.|+||||+..|..+++++|+++|+.++.+|..|
T Consensus        64 ~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn----~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~  139 (226)
T KOG4412|consen   64 KPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN----GGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQG  139 (226)
T ss_pred             CCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC----CCcceehhhhcCChhhHHHHHHhcCCCCccccccc
Confidence            3455555666666666666666666666655 666666555    56666666666666666666666666666666666


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      .||||-|+.-|..+++++|+.+|+.          ++..|..|.||||.|+..+..+...+|
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~----------~n~qDk~G~TpL~~al~e~~~d~a~lL  191 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAP----------LNTQDKYGFTPLHHALAEGHPDVAVLL  191 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCC----------CCcccccCccHHHHHHhccCchHHHHH
Confidence            6666666666666666666666654          455566666666666555555544433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.2e-27  Score=186.06  Aligned_cols=130  Identities=28%  Similarity=0.289  Sum_probs=118.4

Q ss_pred             CcccCCC-CCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCccccc
Q 041054            5 FVNIRDG-RGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDV   81 (298)
Q Consensus         5 ~vn~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~   81 (298)
                      .+|.+|. +|+||||+||..|+.++|.+|++. +..+|..+.    .||||||+|+..|+.++|+.|+.+ |+|+|..+.
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd----aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn  104 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD----AGWTPLHIAASNGNDEVVKELLNRSGADVNATTN  104 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccc----cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC
Confidence            4566666 999999999999999999999963 666666655    899999999999999999999999 999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      .|.|+||||+..|..+|+++|+++|+.          +..+|..+.||||.|+..|+.+++++|...
T Consensus       105 ~G~T~LHyAagK~r~eIaqlLle~ga~----------i~~kD~~~qtplHRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen  105 GGQTCLHYAAGKGRLEIAQLLLEKGAL----------IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             CCcceehhhhcCChhhHHHHHHhcCCC----------CcccccccCchhHHHHhccchhhHHHHHhc
Confidence            999999999999999999999999998          678999999999999999999988877653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.91  E-value=9.3e-25  Score=191.78  Aligned_cols=200  Identities=17%  Similarity=0.064  Sum_probs=150.8

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI   85 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t   85 (298)
                      .+.+|.+|+||||+|+..|+.+++++|++.|++++..      .|+||||+|+..|+.++|++|++.|++++.+|..|+|
T Consensus        23 a~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~------d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~T   96 (284)
T PHA02791         23 AFKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLL------ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNT   96 (284)
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCC------CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            3578999999999999999999999999999988764      3689999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCc
Q 041054           86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKGTAYSLPSPSHSDVGAD  164 (298)
Q Consensus        86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~  164 (298)
                      |||+|+..++.+++++|+++|++.          +..+..| .|||++|+..++.+++++|+......      .+..  
T Consensus        97 pLh~Aa~~g~~eivk~Ll~~gadi----------n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~------~d~~--  158 (284)
T PHA02791         97 ALYYAVDSGNMQTVKLFVKKNWRL----------MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST------FDLA--  158 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCc----------CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc------cccc--
Confidence            999999999999999999999983          4445555 48888888888888888887642100      0000  


Q ss_pred             ccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CC-CCCCCcccccccceeEEEEeecCCCC
Q 041054          165 DNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CL-TPPVCPFCRSTIAHLVVVKIENQEDA  242 (298)
Q Consensus       165 ~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~-~~~~Cp~cr~~I~~~~~~~~~~~~~~  242 (298)
                            .+         ..+-....--||..++.-++..+++.+..+..+ +| ++.++-..+..++++++......+..
T Consensus       159 ------~g---------~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~  223 (284)
T PHA02791        159 ------IL---------LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSV  223 (284)
T ss_pred             ------cC---------ccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccC
Confidence                  00         001111111277777777777776665554444 44 77788888888888877765554444


Q ss_pred             Cc
Q 041054          243 DR  244 (298)
Q Consensus       243 ~~  244 (298)
                      +.
T Consensus       224 ~~  225 (284)
T PHA02791        224 NL  225 (284)
T ss_pred             cc
Confidence            33

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.91  E-value=2.5e-24  Score=198.46  Aligned_cols=136  Identities=35%  Similarity=0.395  Sum_probs=122.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++..|.+|.|+||+||.+++++++++|+++||++|.....   .+.||||||+++|+..+|++|+++|||++.+|..
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~---l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~  144 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGV---LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQ  144 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCC---CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCC
Confidence            6789999999999999999999999999999999999998864   7999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAY  151 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~  151 (298)
                      |.+|||+|++.++..++.+|+..+++          ++.+|.+|+|||++|+.++....+.+|++ ++.+
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d----------~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~  204 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGAD----------IDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASL  204 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhccc----------CCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccc
Confidence            99999999999999999999999988          46678888888888888887774444444 4443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=4.7e-23  Score=181.02  Aligned_cols=134  Identities=16%  Similarity=0.129  Sum_probs=99.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+++++.+|  |+||||+|+..|+.++|++|++.|++++.++.    .|+||||+|+..|+.+++++|+++|++++.++.
T Consensus        52 ~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~----~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~  125 (284)
T PHA02791         52 AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK  125 (284)
T ss_pred             CcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCC
Confidence            355666654  67888888888888888888888888877776    788888888888888888888888888888777


Q ss_pred             CCC-cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054           82 SGR-IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYS  152 (298)
Q Consensus        82 ~g~-tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~  152 (298)
                      .|+ ||||+|+..++.+++++|++++++..           ....|.||||+|+..++.+++++|++ |++..
T Consensus       126 ~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~-----------d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n  187 (284)
T PHA02791        126 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----------DLAILLSCIHITIKNGHVDMMILLLDYMTSTN  187 (284)
T ss_pred             CCCcHHHHHHHHcCCHHHHHHHHhcCCccc-----------ccccCccHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            774 78888888888888888887765411           01235788888888888887776655 44443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.89  E-value=1.1e-23  Score=194.27  Aligned_cols=137  Identities=32%  Similarity=0.290  Sum_probs=127.0

Q ss_pred             CCCCCcccCC-CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054            1 GYARFVNIRD-GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR   79 (298)
Q Consensus         1 ~~~~~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~   79 (298)
                      ++|++||..+ .-+.||||+|+++|++.+|++|+++|||++..|.    +|.||||+|++.|+.-+|-+||.+|+|++.+
T Consensus        99 ~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~----~G~~~lHla~~~~~~~~vayll~~~~d~d~~  174 (600)
T KOG0509|consen   99 SHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDK----QGLTPLHLAAQFGHTALVAYLLSKGADIDLR  174 (600)
T ss_pred             HcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecC----CCCcHHHHHHHhCchHHHHHHHHhcccCCCc
Confidence            4789999999 7799999999999999999999999999999998    8999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcCCCC
Q 041054           80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKGTAY  151 (298)
Q Consensus        80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~~~~  151 (298)
                      |.+|+||||||+.+++...+..|+..++..          ...| ..|.||||+|+..++...+.+|+++++.
T Consensus       175 D~~grTpLmwAaykg~~~~v~~LL~f~a~~----------~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  175 DNNGRTPLMWAAYKGFALFVRRLLKFGASL----------LLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             CCCCCCHHHHHHHhcccHHHHHHHHhcccc----------cccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            999999999999999988899999999983          4444 8899999999999999988888887653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.89  E-value=4.6e-23  Score=192.89  Aligned_cols=196  Identities=19%  Similarity=0.181  Sum_probs=154.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|.+++.+|..|.||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..++.+++++|+++|++++..|.
T Consensus       113 ~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~----~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~  188 (434)
T PHA02874        113 CGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDD----NGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDN  188 (434)
T ss_pred             CcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCC----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC
Confidence            4678999999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDV  161 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~  161 (298)
                      .|.||||+|+..|+.+++++|+++|++          +...+..|.||||.|+..+. +.+.+|+.+++......   .+
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~----------i~~~~~~g~TpL~~A~~~~~-~~i~~Ll~~~~in~~d~---~G  254 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNH----------IMNKCKNGFTPLHNAIIHNR-SAIELLINNASINDQDI---DG  254 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCC----------CcCCCCCCCCHHHHHHHCCh-HHHHHHHcCCCCCCcCC---CC
Confidence            999999999999999999999999998          35567789999999998765 45566666665432111   11


Q ss_pred             CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCccc-ccccceeEEE
Q 041054          162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFC-RSTIAHLVVV  234 (298)
Q Consensus       162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~c-r~~I~~~~~~  234 (298)
                                 ...-......       . ++..+...++..+++.+..+..+ ||++.++-.. +..+.+.++.
T Consensus       255 -----------~TpLh~A~~~-------~-~~~~iv~~Ll~~gad~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~  310 (434)
T PHA02874        255 -----------STPLHHAINP-------P-CDIDIIDILLYHKADISIKDNKGENPIDTAFKYINKDPVIKDIIA  310 (434)
T ss_pred             -----------CCHHHHHHhc-------C-CcHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCccHHHHHHHH
Confidence                       0000000001       0 24557888888888877776666 9999988766 4444444443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.7e-22  Score=164.59  Aligned_cols=142  Identities=17%  Similarity=0.133  Sum_probs=122.8

Q ss_pred             CCCCCcccCCCCCCcHHHHHHHcCCh----HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHH---HHHHHHcC
Q 041054            1 GYARFVNIRDGRGATPLHLAARQRRP----ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC---IRELLAWG   73 (298)
Q Consensus         1 ~~~~~vn~~d~~G~TpLh~Aa~~g~~----~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~---v~~Ll~~g   73 (298)
                      |++.+++..+.++.++||+||+.|+.    +++++|++.|++++..+.    .|+||||+|+..|+.+.   +++|++.|
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~----~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G   83 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH----HGRQCTHMVAWYDRANAVMKIELLVNMG   83 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC----CCCcHHHHHHHhCccCHHHHHHHHHHcC
Confidence            46778888999999999999999998    666678889999887777    89999999999988654   89999999


Q ss_pred             CCCcccc-cCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCC
Q 041054           74 ADRLHRD-VSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTA  150 (298)
Q Consensus        74 ad~~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~  150 (298)
                      ++++.+| ..|.||||+|+..++.+++++|+. .|++          ++..+.++.|||++|...++.+++++|++ +++
T Consensus        84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad----------~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~  153 (166)
T PHA02743         84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN----------LGAINYQHETAYHIAYKMRDRRMMEILRANGAV  153 (166)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC----------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999998 589999999999999999999995 7988          46678899999999999999998888776 555


Q ss_pred             CCCCCC
Q 041054          151 YSLPSP  156 (298)
Q Consensus       151 ~~~~~p  156 (298)
                      ...+..
T Consensus       154 ~~~~~~  159 (166)
T PHA02743        154 CDDPLS  159 (166)
T ss_pred             CCCccc
Confidence            554433

>PHA02741 hypothetical protein; Provisional

Probab=99.88  E-value=1.5e-22  Score=165.53  Aligned_cols=132  Identities=19%  Similarity=0.214  Sum_probs=117.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHh------CCCCccccCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLD------SGALVCASTGGYGCPGSTPLHLAARGGS----IDCIRELLAWGA   74 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~------~ga~~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~ga   74 (298)
                      .++.+|..|.||||+|+..|+.++|++|+.      .|++++.++.    .|+||||+|+..|+    .+++++|+++|+
T Consensus        13 ~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~----~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga   88 (169)
T PHA02741         13 MIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD----AGQMCIHIAAEKHEAQLAAEIIDHLIELGA   88 (169)
T ss_pred             HhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC----CCCcHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            467889999999999999999999999864      3677887776    89999999999999    589999999999


Q ss_pred             CCccccc-CCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           75 DRLHRDV-SGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        75 d~~~~d~-~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +++.++. .|+||||+|+..++.+++++|+. .|++          ++..+.+|+|||+.|...++.+++++|++-.+
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~----------~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGID----------LHFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------CCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999985 89999999999999999999997 5887          46678889999999999999999999887543

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.9e-22  Score=189.67  Aligned_cols=183  Identities=19%  Similarity=0.129  Sum_probs=143.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChH------------------------------------------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPE------------------------------------------------------   27 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~------------------------------------------------------   27 (298)
                      .|+++|.+|..|+||||+||..|+.+                                                      
T Consensus        59 ~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~  138 (477)
T PHA02878         59 RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDK  138 (477)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCcccCcccCcHHHHhh
Confidence            47899999999999999999876543                                                      


Q ss_pred             ----------HHHHHHhCCCCccccCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054           28 ----------CVHILLDSGALVCASTGGYGCP-GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG   96 (298)
Q Consensus        28 ----------~v~~Ll~~ga~~~~~~~~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~   96 (298)
                                ++++|+++|++++..+.    . |.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.
T Consensus       139 ~~~~~~~~~~iv~~Ll~~gadin~~~~----~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~  214 (477)
T PHA02878        139 KSKDDIIEAEITKLLLSYGADINMKDR----HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK  214 (477)
T ss_pred             ccchhhHHHHHHHHHHHcCCCCCccCC----CCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCH
Confidence                      56667777777777766    5 99999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh-hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCc
Q 041054           97 ACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME-ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTE  174 (298)
Q Consensus        97 ~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~  174 (298)
                      +++++|+++|++          ++..+..|.||||+|+.. ++.+++++|++. ++......  ..+           . 
T Consensus       215 ~iv~~Ll~~ga~----------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~--~~g-----------~-  270 (477)
T PHA02878        215 PIVHILLENGAS----------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY--ILG-----------L-  270 (477)
T ss_pred             HHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC--CCC-----------C-
Confidence            999999999998          466788899999999976 578888877664 44322110  000           0 


Q ss_pred             ccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCc
Q 041054          175 LCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCP  222 (298)
Q Consensus       175 ~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp  222 (298)
                                ++....+++..+...++..+++.+..+..+ ||++.++.
T Consensus       271 ----------TpLh~A~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~  309 (477)
T PHA02878        271 ----------TALHSSIKSERKLKLLLEYGADINSLNSYKLTPLSSAVK  309 (477)
T ss_pred             ----------CHHHHHccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                      000001355667888888888887777777 88888874

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=5.2e-22  Score=184.61  Aligned_cols=140  Identities=24%  Similarity=0.208  Sum_probs=112.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC------------------------------CCCCCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG------------------------------GYGCPGS   51 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~------------------------------~~~~~g~   51 (298)
                      .|+++|.++..|.||||+|+..|+.++|++|+++|++++..+.                              ..+..|.
T Consensus        24 ~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~  103 (413)
T PHA02875         24 IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM  103 (413)
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC
Confidence            4678888888899999999999999999999998887765521                              1123578


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054           52 TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLE  131 (298)
Q Consensus        52 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~  131 (298)
                      ||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++          ++..+..|.||||
T Consensus       104 tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~TpL~  173 (413)
T PHA02875        104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC----------LDIEDCCGCTPLI  173 (413)
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----------CCCCCCCCCCHHH
Confidence            888888888888888888888888888888888888888888888888888888887          3556778899999


Q ss_pred             HHHHhhhHHHHHHHhc-CCCC
Q 041054          132 NALMEANKEREKNILK-GTAY  151 (298)
Q Consensus       132 ~A~~~~~~~~~~~ll~-~~~~  151 (298)
                      +|+..++.+++++|++ |++.
T Consensus       174 ~A~~~g~~eiv~~Ll~~ga~~  194 (413)
T PHA02875        174 IAMAKGDIAICKMLLDSGANI  194 (413)
T ss_pred             HHHHcCCHHHHHHHHhCCCCC
Confidence            9999999998887766 4443

>PHA03095 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.8e-22  Score=190.68  Aligned_cols=133  Identities=32%  Similarity=0.346  Sum_probs=118.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCc
Q 041054            2 YARFVNIRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG-SIDCIRELLAWGADRL   77 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~   77 (298)
                      +|+++|.+|..|.||||+|+..+   +.+++++|+++|+++|..+.    .|+||||+|+..+ +.+++++|+++|++++
T Consensus        36 ~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~----~g~TpLh~A~~~~~~~~iv~lLl~~ga~in  111 (471)
T PHA03095         36 AGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPER----CGFTPLHLYLYNATTLDVIKLLIKAGADVN  111 (471)
T ss_pred             cCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCcHHHHHHHHHcCCCCC
Confidence            57899999999999999999998   99999999999999999888    8999999999999 5999999999999999


Q ss_pred             ccccCCCcHHHHHH--hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh--hHHHHHHHhcC
Q 041054           78 HRDVSGRIPYAVAL--KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA--NKEREKNILKG  148 (298)
Q Consensus        78 ~~d~~g~tpL~~A~--~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~--~~~~~~~ll~~  148 (298)
                      .+|..|.||||+|+  ..++.+++++|+++|+++          +..+..|.||||.|+..+  ..+++++|++.
T Consensus       112 ~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~----------~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~  176 (471)
T PHA03095        112 AKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADV----------NALDLYGMTPLAVLLKSRNANVELLRLLIDA  176 (471)
T ss_pred             CCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCCCHHHHHHHHHc
Confidence            99999999999999  566889999999999984          556777888888887765  45666666654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=8.7e-22  Score=166.41  Aligned_cols=134  Identities=17%  Similarity=0.163  Sum_probs=115.5

Q ss_pred             CcccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCccc
Q 041054            5 FVNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHR   79 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~   79 (298)
                      .+|..|..|.||||+|+..+  +.+++++|+++|++++.++..   .|+||||+|+..   ++.+++++|+++|++++.+
T Consensus        43 ~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~---~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~  119 (209)
T PHA02859         43 FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRD---NNLSALHHYLSFNKNVEPEILKILIDSGSSITEE  119 (209)
T ss_pred             hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCC---CCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc
Confidence            36788999999999999855  899999999999999988632   699999998763   4799999999999999999


Q ss_pred             ccCCCcHHHHHHh--cCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHH-HHHhhhHHHHHHHhc-CCCC
Q 041054           80 DVSGRIPYAVALK--HKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLEN-ALMEANKEREKNILK-GTAY  151 (298)
Q Consensus        80 d~~g~tpL~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~-A~~~~~~~~~~~ll~-~~~~  151 (298)
                      |..|.||||+|+.  .++.+++++|+++|++          ++.+|.+|.||||. |...++.+++++|++ |+++
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----------in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi  185 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----------FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDI  185 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----------cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCC
Confidence            9999999999886  4689999999999999          56788899999996 455678888888775 4544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=8.3e-22  Score=186.55  Aligned_cols=135  Identities=24%  Similarity=0.299  Sum_probs=119.7

Q ss_pred             CCCCcccCCCC-CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      +|+++|.+|.. |+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..++.+++++|++.|++++.+|
T Consensus       156 ~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~----~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d  231 (477)
T PHA02878        156 YGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDK----TNNSPLHHAVKHYNKPIVHILLENGASTDARD  231 (477)
T ss_pred             cCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence            58899999999 99999999999999999999999999998887    89999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhc-CcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054           81 VSGRIPYAVALKH-KHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK-GTAYS  152 (298)
Q Consensus        81 ~~g~tpL~~A~~~-~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~-~~~~~  152 (298)
                      ..|.||||+|+.. ++.+++++|+++|+++.          ..+. .|.||||.|  .++.+++++|++ |+++.
T Consensus       232 ~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn----------~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin  294 (477)
T PHA02878        232 KCGNTPLHISVGYCKDYDILKLLLEHGVDVN----------AKSYILGLTALHSS--IKSERKLKLLLEYGADIN  294 (477)
T ss_pred             CCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC----------ccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCC
Confidence            9999999999975 78999999999999953          3343 689999999  455666776665 45543

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=5.4e-22  Score=187.87  Aligned_cols=199  Identities=19%  Similarity=0.125  Sum_probs=153.6

Q ss_pred             CCCCcccCCCCCCcHHHHHH--HcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCc
Q 041054            2 YARFVNIRDGRGATPLHLAA--RQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGADRL   77 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~   77 (298)
                      +|++++..|..|.||||+|+  ..|+.+++++|+++|++++..+.    .|.||||+|+..+  +.+++++|+++|++++
T Consensus        95 ~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din  170 (480)
T PHA03100         95 YGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS----DGENLLHLYLESNKIDLKILKLLIDKGVDIN  170 (480)
T ss_pred             CCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHcCCChHHHHHHHHHCCCCcc
Confidence            47788888888999999999  88899999999999988888776    7889999999988  8999999999999998


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH------HHHHHHHHHhhh--HHHHHHHhcC-
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA------KALLENALMEAN--KEREKNILKG-  148 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~------~t~L~~A~~~~~--~~~~~~ll~~-  148 (298)
                      .+|..|.||||+|+..++.+++++|+++|+++..          .+..+      .|+||.|+..++  .++++.|++. 
T Consensus       171 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~----------~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g  240 (480)
T PHA03100        171 AKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINA----------GDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYG  240 (480)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccC----------CCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcC
Confidence            8888899999999999999999999999888543          23333      899999999998  8888887765 


Q ss_pred             CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccc
Q 041054          149 TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRST  227 (298)
Q Consensus       149 ~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~  227 (298)
                      +++.....   .+           ...-...         .-.|+..+...++..+++.+..+..+ ||++.++-.++..
T Consensus       241 ~din~~d~---~g-----------~TpL~~A---------~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~  297 (480)
T PHA03100        241 VPINIKDV---YG-----------FTPLHYA---------VYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKE  297 (480)
T ss_pred             CCCCCCCC---CC-----------CCHHHHH---------HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHH
Confidence            44322110   00           0000111         11367778888888888776666666 8999999999998


Q ss_pred             cceeEEEEee
Q 041054          228 IAHLVVVKIE  237 (298)
Q Consensus       228 I~~~~~~~~~  237 (298)
                      +.++++....
T Consensus       298 iv~~Ll~~g~  307 (480)
T PHA03100        298 IFKLLLNNGP  307 (480)
T ss_pred             HHHHHHhcCC
Confidence            8888887643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=3.3e-22  Score=189.38  Aligned_cols=208  Identities=18%  Similarity=0.087  Sum_probs=147.8

Q ss_pred             CCCCcccCCCCCCcHHHH-----HHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCC
Q 041054            2 YARFVNIRDGRGATPLHL-----AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA--RGGSIDCIRELLAWGA   74 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~-----Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~ga   74 (298)
                      .|++++..+..|.||||+     |+..++.+++++|+++|++++..+.    .|.||||+|+  ..|+.+++++|+++|+
T Consensus        57 ~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~----~g~tpL~~A~~~~~~~~~iv~~Ll~~g~  132 (480)
T PHA03100         57 NGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN----NGITPLLYAISKKSNSYSIVEYLLDNGA  132 (480)
T ss_pred             cCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC----CCCchhhHHHhcccChHHHHHHHHHcCC
Confidence            466777777788888888     8888888888888888888776665    6888888888  8888888888888888


Q ss_pred             CCcccccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CC
Q 041054           75 DRLHRDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AY  151 (298)
Q Consensus        75 d~~~~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~  151 (298)
                      +++..+..|.||||+|+..+  +.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+ +.
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d----------in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~  202 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD----------INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADI  202 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC----------cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCc
Confidence            88888888888888888888  78888888888877          3555667888888888888888888777643 32


Q ss_pred             CCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCc--hhHHHHHHHHhhcCCCCCCCC-CCCCCCCccccccc
Q 041054          152 SLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGH--QMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTI  228 (298)
Q Consensus       152 ~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH--~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I  228 (298)
                      ........            ....+    .. +.......|+  ..+...++..++..+..+..+ ||++.++-..+..+
T Consensus       203 ~~~~~~~~------------~~~~~----~t-~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~i  265 (480)
T PHA03100        203 NAGDIETL------------LFTIF----ET-PLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEF  265 (480)
T ss_pred             cCCCCCCC------------cHHHH----Hh-HHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            21100000            00000    00 0000111256  668888988887776666666 99999999999999


Q ss_pred             ceeEEEEeecCC
Q 041054          229 AHLVVVKIENQE  240 (298)
Q Consensus       229 ~~~~~~~~~~~~  240 (298)
                      +++++......+
T Consensus       266 v~~Ll~~gad~n  277 (480)
T PHA03100        266 VKYLLDLGANPN  277 (480)
T ss_pred             HHHHHHcCCCCC
Confidence            999988765443

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=183.10  Aligned_cols=132  Identities=20%  Similarity=0.158  Sum_probs=98.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC--------
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA--------   74 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga--------   74 (298)
                      +..+|..+..|.||||.|+..|+.++|++|++.|++++..+.    .|.||||+|+..|+.+++++|+++|+        
T Consensus        25 ~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~  100 (434)
T PHA02874         25 GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINT----KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIP  100 (434)
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhc
Confidence            345677777888888888888888888888888888877665    67788888888877777777776554        


Q ss_pred             ---------------CCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054           75 ---------------DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK  139 (298)
Q Consensus        75 ---------------d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  139 (298)
                                     +++.+|..|.||||+|+..|+.+++++|+++|+++          +..+..|.||||+|+..++.
T Consensus       101 ~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~----------n~~d~~g~tpLh~A~~~~~~  170 (434)
T PHA02874        101 CIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV----------NIEDDNGCYPIHIAIKHNFF  170 (434)
T ss_pred             cCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC----------CCcCCCCCCHHHHHHHCCcH
Confidence                           45556777778888888888888888888877773          44556677777777777777


Q ss_pred             HHHHHHhcC
Q 041054          140 EREKNILKG  148 (298)
Q Consensus       140 ~~~~~ll~~  148 (298)
                      +++++|++.
T Consensus       171 ~iv~~Ll~~  179 (434)
T PHA02874        171 DIIKLLLEK  179 (434)
T ss_pred             HHHHHHHHC
Confidence            777766654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.5e-21  Score=179.03  Aligned_cols=131  Identities=24%  Similarity=0.245  Sum_probs=117.7

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054            7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      +..+..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus        96 ~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~----~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~Tp  171 (413)
T PHA02875         96 DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT----DKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTP  171 (413)
T ss_pred             ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            34567899999999999999999999999999998887    79999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKG-TAY  151 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~-~~~  151 (298)
                      ||+|+..|+.+++++|+++|+++..          .+..+ .+++++|+..++.+++++|++. ++.
T Consensus       172 L~~A~~~g~~eiv~~Ll~~ga~~n~----------~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        172 LIIAMAKGDIAICKMLLDSGANIDY----------FGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCc----------CCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            9999999999999999999999543          34444 5899999999999998888764 444

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.85  E-value=1e-21  Score=159.57  Aligned_cols=128  Identities=28%  Similarity=0.299  Sum_probs=118.5

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..||..|+.|.|||++|+.+|++.+|++||+.||+++....    ...|+|++|++.|..++|++||.++.|+|..|.+|
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk----~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNG  226 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGK----YRESALSLATRGGYTDIVELLLTREVDVNVYDWNG  226 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhh----hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCC
Confidence            56899999999999999999999999999999999998877    67899999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      -|||-+|++.+|.+|++.|+..|++          .+..+..|.+++..|+..|+..+...|
T Consensus       227 gTpLlyAvrgnhvkcve~Ll~sGAd----------~t~e~dsGy~~mdlAValGyr~Vqqvi  278 (296)
T KOG0502|consen  227 GTPLLYAVRGNHVKCVESLLNSGAD----------VTQEDDSGYWIMDLAVALGYRIVQQVI  278 (296)
T ss_pred             CceeeeeecCChHHHHHHHHhcCCC----------cccccccCCcHHHHHHHhhhHHHHHHH
Confidence            9999999999999999999999999          466778899999999999988544333

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.8e-21  Score=183.20  Aligned_cols=208  Identities=23%  Similarity=0.254  Sum_probs=139.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC----------------------------------CC
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG----------------------------------YG   47 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~----------------------------------~~   47 (298)
                      |+.+||..|+.|.||||+||..++.+..+.|++.|+++...+..                                  .+
T Consensus       143 ~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~  222 (929)
T KOG0510|consen  143 YGADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDN  222 (929)
T ss_pred             hcCCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccccc
Confidence            67899999999999999999999999889999999998766641                                  12


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCC---------------CcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCC
Q 041054           48 CPGSTPLHLAARGGSIDCIRELLAWGAD---------------RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVW  112 (298)
Q Consensus        48 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad---------------~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~  112 (298)
                      ..|.||||.|+..|+.++++.+|+.|+.               ++..|.+|.||||+|++.|+.++++.|+..|++    
T Consensus       223 n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~----  298 (929)
T KOG0510|consen  223 NEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS----  298 (929)
T ss_pred             CCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc----
Confidence            3556666666666666666666665432               223455666666666666666666666666666    


Q ss_pred             CCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCC
Q 041054          113 PSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCG  192 (298)
Q Consensus       113 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CG  192 (298)
                            ++.++.++.+|||.|+..|+...++.|++..+......++....+..+++.                    .-|
T Consensus       299 ------I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa--------------------~~g  352 (929)
T KOG0510|consen  299 ------INSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAA--------------------KSG  352 (929)
T ss_pred             ------ccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhh--------------------hcC
Confidence                  566666666677777766666666666553332221111111111111111                    249


Q ss_pred             chhHHHHHHHHhhcCCC----CCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054          193 HQMCAQCTLALCCHNKP----NPTTACLTPPVCPFCRSTIAHLVVVKIENQ  239 (298)
Q Consensus       193 H~~C~~C~~~l~~~~~~----~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~  239 (298)
                      |..|++-++..++.-..    ..-..|++|.+-......++++++.+....
T Consensus       353 H~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  353 HDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             HHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            99999999998887653    233339999999999999999988876554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.7e-21  Score=183.96  Aligned_cols=217  Identities=21%  Similarity=0.194  Sum_probs=144.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC-ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCcc
Q 041054            2 YARFVNIRDGRGATPLHLAARQR-RPECVHILLDSGALVCASTGGYGCPGSTPLHLAA--RGGSIDCIRELLAWGADRLH   78 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~   78 (298)
                      .|+++|.+|..|+||||+|+..+ +.+++++|+++|++++..+.    .|+||||+|+  ..++.+++++|+++|++++.
T Consensus        72 ~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~----~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~  147 (471)
T PHA03095         72 AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK----VGRTPLHVYLSGFNINPKVIRLLLRKGADVNA  147 (471)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC----CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc
Confidence            58899999999999999999999 59999999999999999887    8999999999  56789999999999999999


Q ss_pred             cccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh--hhHHHHHHHhc-CCCCCC
Q 041054           79 RDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME--ANKEREKNILK-GTAYSL  153 (298)
Q Consensus        79 ~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~--~~~~~~~~ll~-~~~~~~  153 (298)
                      +|..|.||||+|+..+  +.+++++|+++|+++..          .+..|.|+||.++..  +..++++.|++ |.+...
T Consensus       148 ~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~----------~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~  217 (471)
T PHA03095        148 LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA----------VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAA  217 (471)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcc
Confidence            9999999999999876  67899999999998543          345556666665543  33444444433 222211


Q ss_pred             CCCCCCCCCCcccccccCCC---cccccccccccceE------------EeCCCchhHHHHHHHHhhcCCCCCCCC-CCC
Q 041054          154 PSPSHSDVGADDNISEASDT---ELCCICFEQVCTIE------------VQDCGHQMCAQCTLALCCHNKPNPTTA-CLT  217 (298)
Q Consensus       154 ~~p~~~~~~~~~~~~~~~~~---~~C~IC~~~~~~~~------------~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~  217 (298)
                      ..   ..+.+..+.+.....   .......+...++.            ..-.|+..++..++..+++.+..+..+ ||+
T Consensus       218 ~d---~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl  294 (471)
T PHA03095        218 TD---MLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPL  294 (471)
T ss_pred             cC---CCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            00   000000000000000   00000000000000            011356666777777777666555555 777


Q ss_pred             CCCCcccccccceeEEEE
Q 041054          218 PPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       218 ~~~Cp~cr~~I~~~~~~~  235 (298)
                      +.++..++..|+++++..
T Consensus       295 ~~A~~~~~~~~v~~LL~~  312 (471)
T PHA03095        295 SLMVRNNNGRAVRAALAK  312 (471)
T ss_pred             HHHHHhCCHHHHHHHHHh
Confidence            777777777777766654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=4.7e-21  Score=161.91  Aligned_cols=122  Identities=21%  Similarity=0.255  Sum_probs=109.4

Q ss_pred             CCCCcccCC-CCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcCCC
Q 041054            2 YARFVNIRD-GRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR--GGSIDCIRELLAWGAD   75 (298)
Q Consensus         2 ~~~~vn~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~gad   75 (298)
                      .|+++|.++ ..|+||||+|+..   ++.+++++|+++|+++|..+.    .|.||||+|+.  .++.+++++|+++|++
T Consensus        75 ~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~----~G~TpLh~a~~~~~~~~~iv~~Li~~gad  150 (209)
T PHA02859         75 NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDE----DGKNLLHMYMCNFNVRINVIKLLIDSGVS  150 (209)
T ss_pred             CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            478999997 4899999998864   479999999999999999887    89999999986  4689999999999999


Q ss_pred             CcccccCCCcHHHH-HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054           76 RLHRDVSGRIPYAV-ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA  137 (298)
Q Consensus        76 ~~~~d~~g~tpL~~-A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~  137 (298)
                      ++.+|..|.||||. |+..++.+++++|+++|++          ++.+|..|+|||++|..++
T Consensus       151 in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad----------i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        151 FLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID----------INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHhhhh
Confidence            99999999999995 5678899999999999998          4667889999999998765

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.85  E-value=5e-21  Score=185.95  Aligned_cols=137  Identities=17%  Similarity=0.197  Sum_probs=108.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCC--hHHHHHHHhCCCCccccCCCCCCCCChHHHHH----------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRR--PECVHILLDSGALVCASTGGYGCPGSTPLHLA----------------------   57 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A----------------------   57 (298)
                      .|+++|.+|..|+||||+|+..|+  .++|++||++||++|.++.    .|+||||+|                      
T Consensus       201 ~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~----~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n  276 (764)
T PHA02716        201 NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCV----NGMSPIMTYIINIDNINPEITNIYIESLDGN  276 (764)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHhhhccCHHHHHHHHHhcccc
Confidence            467888888888888888888885  4888888888888888776    788888864                      


Q ss_pred             ---------------HHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh--cCcHHHHHHhccCCCCCCCCCCChhhhh
Q 041054           58 ---------------ARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK--HKHGACAALLNPASAEPLVWPSPLKFIS  120 (298)
Q Consensus        58 ---------------~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~--~~~~~~~~~Ll~~ga~~~~~~~~~~~~~  120 (298)
                                     +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|++          ++
T Consensus       277 ~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD----------IN  346 (764)
T PHA02716        277 KVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND----------LN  346 (764)
T ss_pred             ccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC----------Cc
Confidence                           34577888888888888888888888888888764  4577888888888887          46


Q ss_pred             HhhHHHHHHHHHHHHh--------------hhHHHHHHHhc-CCCCC
Q 041054          121 ELNQEAKALLENALME--------------ANKEREKNILK-GTAYS  152 (298)
Q Consensus       121 ~~~~~~~t~L~~A~~~--------------~~~~~~~~ll~-~~~~~  152 (298)
                      .+|..|.||||+|+..              ++.+++++|++ |+++.
T Consensus       347 ~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn  393 (764)
T PHA02716        347 EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADIT  393 (764)
T ss_pred             cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCC
Confidence            6788999999998652              46788877766 44443

>PHA02946 ankyin-like protein; Provisional

Probab=99.85  E-value=5.9e-21  Score=178.62  Aligned_cols=146  Identities=21%  Similarity=0.190  Sum_probs=117.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCcc-
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGADRLH-   78 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~gad~~~-   78 (298)
                      .|+++|.+|..|+||||+|+..|+.++|++||++|+++|.++.    .|+||||+|+..+  ..+++++|+++|++++. 
T Consensus        61 ~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~----~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~  136 (446)
T PHA02946         61 RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDK----QHKTPLYYLSGTDDEVIERINLLVQYGAKINNS  136 (446)
T ss_pred             CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC----CCCCHHHHHHHcCCchHHHHHHHHHcCCCcccc
Confidence            5789999999999999999999999999999999999998887    8999999998865  47899999999999985 


Q ss_pred             cccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCC----CChh---------------------hhhHhhHHHHHHHHHH
Q 041054           79 RDVSGRIPYAVALKHKHGACAALLNPASAEPLVWP----SPLK---------------------FISELNQEAKALLENA  133 (298)
Q Consensus        79 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~---------------------~~~~~~~~~~t~L~~A  133 (298)
                      .|..|.|||+ |+..++.+++++|++.|+++....    +|.+                     .++..|.+|.||||+|
T Consensus       137 ~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        137 VDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             cCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            5788888886 556678888888888887754332    1111                     1234577888999999


Q ss_pred             HHhh--hHHHHHHHhcCCCCC
Q 041054          134 LMEA--NKEREKNILKGTAYS  152 (298)
Q Consensus       134 ~~~~--~~~~~~~ll~~~~~~  152 (298)
                      +..+  +.+++++|+.++++.
T Consensus       216 a~~~~~~~~iv~lLl~gadin  236 (446)
T PHA02946        216 CSKTVKNVDIINLLLPSTDVN  236 (446)
T ss_pred             HHcCCCcHHHHHHHHcCCCCC
Confidence            8875  677888877776654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=4e-21  Score=182.40  Aligned_cols=134  Identities=22%  Similarity=0.214  Sum_probs=117.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHc-----CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC---CHHHHHHHHHcC
Q 041054            2 YARFVNIRDGRGATPLHLAARQ-----RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG---SIDCIRELLAWG   73 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~-----g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g---~~~~v~~Ll~~g   73 (298)
                      +|+++|.+|..|.||||.|+.+     ++.+++++|+++|+++|.++.    .|+||||+|+..+   +.+++++|+++|
T Consensus        60 ~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~----~G~TpLh~a~~~~~~~~~~iv~~Ll~~G  135 (489)
T PHA02798         60 LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNS----DGETPLYCLLSNGYINNLEILLFMIENG  135 (489)
T ss_pred             CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCC----CcCcHHHHHHHcCCcChHHHHHHHHHcC
Confidence            6899999999999999999864     678999999999999999988    8999999999975   789999999999


Q ss_pred             CCCcccccCCCcHHHHHHhcCc---HHHHHHhccCCCCCCCCCCChhhhhHh-hHHHHHHHHHHHHhh----hHHHHHHH
Q 041054           74 ADRLHRDVSGRIPYAVALKHKH---GACAALLNPASAEPLVWPSPLKFISEL-NQEAKALLENALMEA----NKEREKNI  145 (298)
Q Consensus        74 ad~~~~d~~g~tpL~~A~~~~~---~~~~~~Ll~~ga~~~~~~~~~~~~~~~-~~~~~t~L~~A~~~~----~~~~~~~l  145 (298)
                      ++++.+|..|.||||+|+..++   .+++++|+++|+++          +.. +..+.||||.++..+    +.+++++|
T Consensus       136 advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadi----------n~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~L  205 (489)
T PHA02798        136 ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDI----------NTHNNKEKYDTLHCYFKYNIDRIDADILKLF  205 (489)
T ss_pred             CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCc----------ccccCcCCCcHHHHHHHhccccCCHHHHHHH
Confidence            9999999999999999999988   99999999999984          333 346788999887653    67778777


Q ss_pred             hcCC
Q 041054          146 LKGT  149 (298)
Q Consensus       146 l~~~  149 (298)
                      ++.+
T Consensus       206 i~~G  209 (489)
T PHA02798        206 VDNG  209 (489)
T ss_pred             HHCC
Confidence            6643

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.84  E-value=9.7e-21  Score=183.92  Aligned_cols=209  Identities=13%  Similarity=0.115  Sum_probs=150.9

Q ss_pred             CCcccC-CCCCCcHHHHHHH--cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC--HHHHHHHHHcCCCCcc
Q 041054            4 RFVNIR-DGRGATPLHLAAR--QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS--IDCIRELLAWGADRLH   78 (298)
Q Consensus         4 ~~vn~~-d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~--~~~v~~Ll~~gad~~~   78 (298)
                      +++|.+ |..|.||||+|+.  +++.++|++|+++|+++|.++.    .|.||||+|+..|+  .++|++|+++||+++.
T Consensus       167 ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~----~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~  242 (764)
T PHA02716        167 VNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN----HLITPLHTYLITGNVCASVIKKIIELGGDMDM  242 (764)
T ss_pred             CCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC
Confidence            789998 9999999999864  4678999999999999999887    89999999999995  5999999999999999


Q ss_pred             cccCCCcHHHHHH-------------------------------------hcCcHHHHHHhccCCCCCCCCCCChhhhhH
Q 041054           79 RDVSGRIPYAVAL-------------------------------------KHKHGACAALLNPASAEPLVWPSPLKFISE  121 (298)
Q Consensus        79 ~d~~g~tpL~~A~-------------------------------------~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  121 (298)
                      +|..|+||||+|+                                     ..|+.+++++|+++|++          ++.
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd----------IN~  312 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK----------LHY  312 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc----------eec
Confidence            9999999999763                                     34667788888888887          567


Q ss_pred             hhHHHHHHHHHHHHh--hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHH
Q 041054          122 LNQEAKALLENALME--ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQ  198 (298)
Q Consensus       122 ~~~~~~t~L~~A~~~--~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~  198 (298)
                      +|..|+||||+|+..  ++.+++++|++. +++....   ..+.+..+.+..      ..+.....+......+|..+..
T Consensus       313 kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD---~~G~TPLH~A~~------~lav~~~ld~~~~~~~~~eVVk  383 (764)
T PHA02716        313 KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD---NIGNTVLHTYLS------MLSVVNILDPETDNDIRLDVIQ  383 (764)
T ss_pred             cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC---CCCCCHHHHHHH------hhhhhccccccccccChHHHHH
Confidence            788999999998754  467888877664 4433211   111111110000      0011111111122357888999


Q ss_pred             HHHHHhhcCCCCCCCC-CCCCC-CCc---ccccccceeEEEE
Q 041054          199 CTLALCCHNKPNPTTA-CLTPP-VCP---FCRSTIAHLVVVK  235 (298)
Q Consensus       199 C~~~l~~~~~~~~~~~-~~~~~-~Cp---~cr~~I~~~~~~~  235 (298)
                      .++..++........+ ||++. +|.   .+...|+++++..
T Consensus       384 lLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        384 CLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             HHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhC
Confidence            9999988887666666 89983 343   3456677666553

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=6.7e-22  Score=171.20  Aligned_cols=137  Identities=31%  Similarity=0.366  Sum_probs=119.2

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCC-CCccccCCCC----------------------------------CCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGY----------------------------------GCP   49 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~~~~~----------------------------------~~~   49 (298)
                      -||.-|.+|+|+||||+.++++++|+.||+.| .+++.++..-                                  -..
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            37889999999999999999999999999986 4566555210                                  046


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC-CCCCCCCCCChhhhhHhhHHHHH
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA-SAEPLVWPSPLKFISELNQEAKA  128 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~t  128 (298)
                      |+|+||+|+.+|+.++|+.||..|||+|.+|.+|-|+|+.|+.+||.+|+++||.. +.+          +...|.+|.|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd----------~sLtD~DgST  409 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD----------ISLTDVDGST  409 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc----------ceeecCCCch
Confidence            99999999999999999999999999999999999999999999999999999976 333          5678999999


Q ss_pred             HHHHHHHhhhHHHHHHHhcCCCC
Q 041054          129 LLENALMEANKEREKNILKGTAY  151 (298)
Q Consensus       129 ~L~~A~~~~~~~~~~~ll~~~~~  151 (298)
                      +|.+|+..++.++..+|....++
T Consensus       410 Al~IAleagh~eIa~mlYa~~n~  432 (452)
T KOG0514|consen  410 ALSIALEAGHREIAVMLYAHMNI  432 (452)
T ss_pred             hhhhHHhcCchHHHHHHHHHHHh
Confidence            99999999999998888766554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=1.4e-21  Score=174.19  Aligned_cols=131  Identities=22%  Similarity=0.201  Sum_probs=117.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|++||....-.-|||..||..|+.++|++|+++|+|++..+.    .|.|.||+|+.+|+.+++++|++.|||+|.++.
T Consensus       106 ~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~Ianr----hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~  181 (615)
T KOG0508|consen  106 RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANR----HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSY  181 (615)
T ss_pred             hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCccccc----CCCeeEEeeeccCchHHHHHHHHhCCCcchhcc
Confidence            3578888888888999999999999999999999999998888    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      .|+|+||.+++.|+.+++++|+.+|+.           ..+|..|.|||..|...+..+++..|++
T Consensus       182 kGNTALH~caEsG~vdivq~Ll~~ga~-----------i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  182 KGNTALHDCAESGSVDIVQLLLKHGAK-----------IDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             cCchHHHhhhhcccHHHHHHHHhCCce-----------eeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999999999999987           4567779999999999999888888775

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=8.7e-21  Score=180.09  Aligned_cols=149  Identities=16%  Similarity=0.112  Sum_probs=126.8

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS---IDCIRELLAWGAD   75 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~gad   75 (298)
                      +|+++|.+|..|+||||+|+..+   +.+++++|+++|++++..+.    .|.||||+|+..++   .+++++|+++|++
T Consensus        98 ~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~----~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad  173 (489)
T PHA02798         98 NGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDK----DGFTMLQVYLQSNHHIDIEIIKLLLEKGVD  173 (489)
T ss_pred             CCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCC----CCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence            58999999999999999999886   78999999999999999888    89999999999988   9999999999999


Q ss_pred             Ccccc-cCCCcHHHHHHhc----CcHHHHHHhccCCCCCCCCCC----Ch-------------------------hhhhH
Q 041054           76 RLHRD-VSGRIPYAVALKH----KHGACAALLNPASAEPLVWPS----PL-------------------------KFISE  121 (298)
Q Consensus        76 ~~~~d-~~g~tpL~~A~~~----~~~~~~~~Ll~~ga~~~~~~~----~~-------------------------~~~~~  121 (298)
                      ++.++ ..|.||||.++..    ++.+++++|+++|+++.....    +.                         ..++.
T Consensus       174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~  253 (489)
T PHA02798        174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQ  253 (489)
T ss_pred             cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCC
Confidence            99885 4689999998764    478999999999998765321    10                         02345


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCCC
Q 041054          122 LNQEAKALLENALMEANKEREKNILK-GTAYSLP  154 (298)
Q Consensus       122 ~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~  154 (298)
                      +|..|.||||+|+..++.+++++|++ |+++...
T Consensus       254 ~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        254 VDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             cCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc
Confidence            78899999999999999998777654 8887653

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=166.38  Aligned_cols=130  Identities=19%  Similarity=0.140  Sum_probs=111.9

Q ss_pred             ccCCCCCCcH-HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCC
Q 041054            7 NIRDGRGATP-LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGR   84 (298)
Q Consensus         7 n~~d~~G~Tp-Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~   84 (298)
                      -.+|..|+|+ ||.|+..|+.+++++|+++|++++.++...+..|.||||+|+..++.+++++|+++||+++.++ ..|.
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            4578888885 5566677899999999999999998753223379999999999999999999999999999864 5799


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      ||||+|+..++.+++++|+.+|++          ++.++..|.|||+.|+..++.+++.++.
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAd----------in~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGAD----------INIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            999999999999999999999999          4667888999999999888777665443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5.3e-21  Score=181.77  Aligned_cols=217  Identities=13%  Similarity=0.040  Sum_probs=149.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHH------cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHc---CCHHHHHHHHHc
Q 041054            2 YARFVNIRDGRGATPLHLAAR------QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG---GSIDCIRELLAW   72 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~------~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~   72 (298)
                      .|++||.++ .+.||||.|+.      .++.++|++||++|+++|..+.    .|.||||.|+..   ++.+++++|+++
T Consensus        59 ~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~----~g~tpL~~a~~~~~~~~~eiv~~Ll~~  133 (494)
T PHA02989         59 NGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF----NGVSPIVCFIYNSNINNCDMLRFLLSK  133 (494)
T ss_pred             cCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHhcccCcHHHHHHHHHC
Confidence            588999887 57999998875      4788999999999999998887    799999988765   678999999999


Q ss_pred             CCCC-cccccCCCcHHHHHHhc--CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh----hHHHHHHH
Q 041054           73 GADR-LHRDVSGRIPYAVALKH--KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA----NKEREKNI  145 (298)
Q Consensus        73 gad~-~~~d~~g~tpL~~A~~~--~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~----~~~~~~~l  145 (298)
                      |||+ +.+|..|+||||+|+..  ++.+++++|+++|+++..         ..+..+.|||+.|+..+    +.+++++|
T Consensus       134 Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~---------~~~~~g~tpL~~a~~~~~~~~~~~iv~~L  204 (494)
T PHA02989        134 GINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE---------KTSLYGLTPMNIYLRNDIDVISIKVIKYL  204 (494)
T ss_pred             CCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc---------cccccCCChHHHHHhcccccccHHHHHHH
Confidence            9999 78899999999998754  578999999999998432         14667889999887654    88877776


Q ss_pred             hc-CCCCCCCCCCCCCCCCcccccccCCC---ccccc---ccccccceEE------------eCCCchhHHHHHHHHhhc
Q 041054          146 LK-GTAYSLPSPSHSDVGADDNISEASDT---ELCCI---CFEQVCTIEV------------QDCGHQMCAQCTLALCCH  206 (298)
Q Consensus       146 l~-~~~~~~~~p~~~~~~~~~~~~~~~~~---~~C~I---C~~~~~~~~~------------~~CGH~~C~~C~~~l~~~  206 (298)
                      ++ |++.......   .....+.......   ..+..   -+....++..            ...||...+..++..+++
T Consensus       205 l~~Ga~vn~~~~~---~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad  281 (494)
T PHA02989        205 IKKGVNIETNNNG---SESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD  281 (494)
T ss_pred             HhCCCCccccCCc---cccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC
Confidence            55 5554432210   0000000000000   00000   0000011111            113677778888888888


Q ss_pred             CCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          207 NKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       207 ~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      .+..+..+ ||++.++..++..|+++++..
T Consensus       282 in~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        282 IYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            77776666 889999888888888877754

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.83  E-value=3.4e-21  Score=155.05  Aligned_cols=129  Identities=20%  Similarity=0.236  Sum_probs=106.4

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC-------ccccCCCCCCCCChHHHHHHHcCCH---HHHHHHHHcCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGAL-------VCASTGGYGCPGSTPLHLAARGGSI---DCIRELLAWGA   74 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~-------~~~~~~~~~~~g~TpLh~A~~~g~~---~~v~~Ll~~ga   74 (298)
                      +.+.+|..|.||||+|++.|+.  +.+++..+..       ++..+.    .|.||||+|+..|+.   +++++|++.|+
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~----~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga   82 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR----HGKQCVHIVSNPDKADPQEKLKLLMEWGA   82 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC----CCCEEEEeecccCchhHHHHHHHHHHcCC
Confidence            4678899999999999999984  3444333222       122333    899999999999987   46899999999


Q ss_pred             CCcccc-cCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           75 DRLHRD-VSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        75 d~~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +++.+| ..|.||||+|+..++.+++++|+. .|++          ++..+..|.|||++|...++.+++++|++.+
T Consensus        83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d----------~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~g  149 (154)
T PHA02736         83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVN----------MEILNYAFKTPYYVACERHDAKMMNILRAKG  149 (154)
T ss_pred             CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC----------CccccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999998 489999999999999999999997 4887          4667889999999999999999888877643

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=1.2e-20  Score=177.82  Aligned_cols=136  Identities=32%  Similarity=0.384  Sum_probs=120.6

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cC-CCCcccccC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WG-ADRLHRDVS   82 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~g-ad~~~~d~~   82 (298)
                      .||..|.+|.||||+|++.|+++.|+.|+..|++++.++.    ++.||||.||..|+.++|+.||+ .| ..++..|-.
T Consensus       265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~----d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNK----DEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCC----CCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence            4788999999999999999999999999999999999987    89999999999999999999999 53 456888999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH-hcCCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI-LKGTAY  151 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l-l~~~~~  151 (298)
                      |+||||+|++.||..++++|++.|+....       ..+.|.+|.|+||.|+..++...+..| .+|+++
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~GA~~~~-------~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I  403 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKGALFLN-------MSEADSDGNTALHLAAKYGNTSAVQKLISHGADI  403 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcChhhhc-------ccccccCCchhhhHHHHhccHHHHHHHHHcCCce
Confidence            99999999999999999999999998431       115599999999999999999866655 556665

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1e-20  Score=186.46  Aligned_cols=203  Identities=21%  Similarity=0.206  Sum_probs=155.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCCh-HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC-CHHHHHHHHHcCCCCccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRP-ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG-SIDCIRELLAWGADRLHR   79 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~-~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g-~~~~v~~Ll~~gad~~~~   79 (298)
                      .|.++|..|..|+||||+|+..++. +++++|++.|++++..+.    .|.||||+|+..| +.+++++|+..|++++..
T Consensus       262 ~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~----~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~  337 (682)
T PHA02876        262 AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNI----KGETPLYLMAKNGYDTENIRTLIMLGADVNAA  337 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCc
Confidence            3678899999999999999999986 689999999999998887    8999999999999 699999999999999999


Q ss_pred             ccCCCcHHHHHHhc-CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCC
Q 041054           80 DVSGRIPYAVALKH-KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPS  157 (298)
Q Consensus        80 d~~g~tpL~~A~~~-~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~  157 (298)
                      |..|.||||+|+.. ++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+ +...... 
T Consensus       338 d~~g~TpLh~A~~~~~~~~iv~lLl~~gad----------in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~-  406 (682)
T PHA02876        338 DRLYITPLHQASTLDRNKDIVITLLELGAN----------VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQ-  406 (682)
T ss_pred             ccCCCcHHHHHHHhCCcHHHHHHHHHcCCC----------CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCC-
Confidence            99999999999985 578899999999998          4667888999999999999999888887643 3221110 


Q ss_pred             CCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcc-cccccceeEEEE
Q 041054          158 HSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPF-CRSTIAHLVVVK  235 (298)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~-cr~~I~~~~~~~  235 (298)
                        ...+..+         -.+|          ..++..+...++..++..+..+..+ ||++.++.. |+..|+++++..
T Consensus       407 --~g~T~Lh---------~A~~----------~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        407 --KIGTALH---------FALC----------GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             --CCCchHH---------HHHH----------cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence              0000000         0000          1123346677777777766666666 888888863 566788877766


Q ss_pred             eecCC
Q 041054          236 IENQE  240 (298)
Q Consensus       236 ~~~~~  240 (298)
                      ....+
T Consensus       466 Gad~n  470 (682)
T PHA02876        466 GADVN  470 (682)
T ss_pred             CCCCC
Confidence            54443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.82  E-value=2.5e-20  Score=151.86  Aligned_cols=106  Identities=22%  Similarity=0.245  Sum_probs=96.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHH---HHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPEC---VHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRL   77 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~---v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~   77 (298)
                      .+.+++.+|..|+||||+|+..|+.+.   +++|+++|+++|.++..   .|.||||+|+..++.+++++|+. .|++++
T Consensus        46 ~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~---~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~  122 (166)
T PHA02743         46 DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELG---TGNTLLHIAASTKNYELAEWLCRQLGVNLG  122 (166)
T ss_pred             cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCC---CCCcHHHHHHHhCCHHHHHHHHhccCCCcc
Confidence            356788899999999999999998654   79999999999988631   69999999999999999999996 799999


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPL  110 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~  110 (298)
                      .+|..|.||||+|+..++.+++++|+.+|++..
T Consensus       123 ~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743        123 AINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999853

>PHA02946 ankyin-like protein; Provisional

Probab=99.82  E-value=5.5e-20  Score=172.09  Aligned_cols=215  Identities=13%  Similarity=0.069  Sum_probs=135.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCcccc-CC----------------------------CCCCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCAS-TG----------------------------GYGCPG   50 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~-~~----------------------------~~~~~g   50 (298)
                      .|+++|.+|..|+||||+|+..+  ..+++++|+++|++++.. +.                            ..|..|
T Consensus        94 ~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G  173 (446)
T PHA02946         94 HGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFG  173 (446)
T ss_pred             CcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCC
Confidence            57888889999999999888765  378888888888888742 22                            112356


Q ss_pred             ChHHHHHHHcC--CHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHH
Q 041054           51 STPLHLAARGG--SIDCIRELLAWGADRLHRDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEA  126 (298)
Q Consensus        51 ~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  126 (298)
                      +||||+|+..+  +.+++++|+++|++++.+|..|.||||+|+..+  +.+++++|++ |++          ++.+|..|
T Consensus       174 ~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad----------in~~d~~G  242 (446)
T PHA02946        174 KNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD----------VNKQNKFG  242 (446)
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC----------CCCCCCCC
Confidence            66666665533  356677777777777777777777777777664  5667777664 565          56678899


Q ss_pred             HHHHHHHHHhhhH-HHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCccccccccc------ccceEEeCCCchhHHHH
Q 041054          127 KALLENALMEANK-EREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQ------VCTIEVQDCGHQMCAQC  199 (298)
Q Consensus       127 ~t~L~~A~~~~~~-~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~------~~~~~~~~CGH~~C~~C  199 (298)
                      .||||+|+..++. +++++|+..++.....+...       ...........+....      .+-....--||..++..
T Consensus       243 ~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~-------a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~  315 (446)
T PHA02946        243 DSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNI-------CIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKY  315 (446)
T ss_pred             CCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHH-------HHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHH
Confidence            9999999998874 67777766544221000000       0000000000001111      11111112488889998


Q ss_pred             HHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCC
Q 041054          200 TLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQE  240 (298)
Q Consensus       200 ~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~  240 (298)
                      ++.....      ..||++.+.-.....++++++......+
T Consensus       316 Ll~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~ga~~n  350 (446)
T PHA02946        316 LLDNDII------CEDAMYYAVLSEYETMVDYLLFNHFSVD  350 (446)
T ss_pred             HHHCCCc------cccHHHHHHHhCHHHHHHHHHHCCCCCC
Confidence            8875332      2489999999999999998887654433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=176.10  Aligned_cols=106  Identities=18%  Similarity=0.259  Sum_probs=72.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCc-cccCCCCCCCCChHHHHHHHc--CCHHHHHHHHHcCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGALV-CASTGGYGCPGSTPLHLAARG--GSIDCIRELLAWGAD   75 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~-~~~~~~~~~~g~TpLh~A~~~--g~~~~v~~Ll~~gad   75 (298)
                      +|+++|.+|..|+||||.|+..   ++.++|++|+++|+++ +..+.    .|+||||+|+..  ++.++|++|+++|++
T Consensus        97 ~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~----~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad  172 (494)
T PHA02989         97 FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS----RGYNLLHMYLESFSVKKDVIKILLSFGVN  172 (494)
T ss_pred             CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC----CCCCHHHHHHHhccCCHHHHHHHHHcCCC
Confidence            5677777777777887776654   5677777777777777 55555    677777776543  466777777777777


Q ss_pred             Ccc-cccCCCcHHHHHHhcC----cHHHHHHhccCCCCCCC
Q 041054           76 RLH-RDVSGRIPYAVALKHK----HGACAALLNPASAEPLV  111 (298)
Q Consensus        76 ~~~-~d~~g~tpL~~A~~~~----~~~~~~~Ll~~ga~~~~  111 (298)
                      ++. .+..|.||||+|+..+    +.+++++|+++|+++..
T Consensus       173 i~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~  213 (494)
T PHA02989        173 LFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIET  213 (494)
T ss_pred             ccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccc
Confidence            766 4556667766665543    56666666666666543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.9e-20  Score=184.63  Aligned_cols=136  Identities=21%  Similarity=0.180  Sum_probs=115.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH-----------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL-----------   70 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll-----------   70 (298)
                      .|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..++.+++++|+           
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~----~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~  242 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL----DDLSVLECAVDSKNIDTIKAIIDNRSNINKNDL  242 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCC----CCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcH
Confidence            5789999999999999999999999999999999999998877    7899999999988877766554           


Q ss_pred             ------------------HcCCCCcccccCCCcHHHHHHhcCcH-HHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054           71 ------------------AWGADRLHRDVSGRIPYAVALKHKHG-ACAALLNPASAEPLVWPSPLKFISELNQEAKALLE  131 (298)
Q Consensus        71 ------------------~~gad~~~~d~~g~tpL~~A~~~~~~-~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~  131 (298)
                                        +.|++++..|..|.||||+|+..++. +++++|++.|++          ++..+..|.||||
T Consensus       243 ~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gad----------in~~d~~g~TpLh  312 (682)
T PHA02876        243 SLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGAD----------VNAKNIKGETPLY  312 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCC----------CCCcCCCCCCHHH
Confidence                              55667888888999999999999885 689999999998          4566788999999


Q ss_pred             HHHHhh-hHHHHHHHhc-CCCC
Q 041054          132 NALMEA-NKEREKNILK-GTAY  151 (298)
Q Consensus       132 ~A~~~~-~~~~~~~ll~-~~~~  151 (298)
                      +|+..+ ..+.+++|+. |++.
T Consensus       313 ~Aa~~g~~~~~v~~Ll~~gadi  334 (682)
T PHA02876        313 LMAKNGYDTENIRTLIMLGADV  334 (682)
T ss_pred             HHHHhCCCHHHHHHHHHcCCCC
Confidence            999988 4676666654 4443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=168.81  Aligned_cols=136  Identities=12%  Similarity=0.046  Sum_probs=114.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR   79 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~   79 (298)
                      +|++++..  ++.||||.|+..++.+++++|+++|++......  ..+..+.|++|.|+..++.+++++|+++||+++.+
T Consensus       140 ~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~k  217 (437)
T PHA02795        140 HGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQL  217 (437)
T ss_pred             CCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcC
Confidence            68888874  448899999999999999999999875322211  11124789999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh--------HHHHHHHhcCC
Q 041054           80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEAN--------KEREKNILKGT  149 (298)
Q Consensus        80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~--------~~~~~~ll~~~  149 (298)
                      |..|.||||+|+..|+.+++++|+++|++          ++.++..|.||||.|+..++        .+++++|++.+
T Consensus       218 D~~G~TpLh~Aa~~g~~eiVelLL~~GAd----------IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        218 DAGGRTLLYRAIYAGYIDLVSWLLENGAN----------VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            99999999999999999999999999999          57788899999999999884        57888877643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=5.1e-20  Score=184.49  Aligned_cols=132  Identities=20%  Similarity=0.206  Sum_probs=108.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|.++|..|..|+||||+|+..|+.+++++|+++|+++|..+.    .|+||||+|+..|+.+++++|++.++..+.  .
T Consensus       547 ~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~----~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~--~  620 (823)
T PLN03192        547 AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDA----NGNTALWNAISAKHHKIFRILYHFASISDP--H  620 (823)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCC----CCCCHHHHHHHhCCHHHHHHHHhcCcccCc--c
Confidence            3677888888888888888888888888888888888887776    788888888888888888888887765543  3


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .+.++||+|+..|+.+++++|+++|++          ++..|.+|.||||.|+..++.+++++|++.+
T Consensus       621 ~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----------in~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  678 (823)
T PLN03192        621 AAGDLLCTAAKRNDLTAMKELLKQGLN----------VDSEDHQGATALQVAMAEDHVDMVRLLIMNG  678 (823)
T ss_pred             cCchHHHHHHHhCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            466888888888888888888888888          4667888999999999999999888887643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=2.4e-20  Score=166.41  Aligned_cols=128  Identities=26%  Similarity=0.297  Sum_probs=120.9

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      ....|-+||-.|+..||+++|+.|+.+|+++|..+.    ...|||--|+..|+.++|++|+++|+|++..|..|.|.||
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~----TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLm  155 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR----TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLM  155 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhcCccccccc----cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEE
Confidence            356799999999999999999999999999998887    6789999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +|+.+|+.+|+++|++.|++          ++.++..|.|+||.++..++.+++++|++.+.
T Consensus       156 Ia~ykGh~~I~qyLle~gAD----------vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga  207 (615)
T KOG0508|consen  156 IACYKGHVDIAQYLLEQGAD----------VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA  207 (615)
T ss_pred             eeeccCchHHHHHHHHhCCC----------cchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence            99999999999999999999          68889999999999999999999999987543

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=4e-20  Score=155.96  Aligned_cols=120  Identities=30%  Similarity=0.335  Sum_probs=110.6

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      ..|+|.-|.+|.+|||+||+.||..+|+.||..|+.+|..+.    ...||||+|+..|+.++|+.|++..+|+|..+..
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnm----gddtplhlaaahghrdivqkll~~kadvnavneh   99 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----GDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH   99 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccC----CCCcchhhhhhcccHHHHHHHHHHhcccchhhcc
Confidence            357899999999999999999999999999999999998876    4679999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME  136 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~  136 (298)
                      |+||||||+..|...+++-|+..|+-          ++.-++.|.|||+.|.-.
T Consensus       100 gntplhyacfwgydqiaedli~~ga~----------v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen  100 GNTPLHYACFWGYDQIAEDLISCGAA----------VNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             CCCchhhhhhhcHHHHHHHHHhccce----------eeecccCCCCchhhhchH
Confidence            99999999999999999999999997          566788888888887543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.81  E-value=1.5e-19  Score=141.85  Aligned_cols=123  Identities=30%  Similarity=0.285  Sum_probs=104.3

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..||.+|.+|.||||-|+.+||.++|+.|+..||+++.++.    .||||||-|+.-.+.+++.+||++|+|+|......
T Consensus        88 n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~----~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~  163 (228)
T KOG0512|consen   88 NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTN----EGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGL  163 (228)
T ss_pred             ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccc----cCccchhhhhcccchhHHHHHHhccCccccccccc
Confidence            45899999999999999999999999999999999999998    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcH-HHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH
Q 041054           84 RIPYAVALKHKHG-ACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKE  140 (298)
Q Consensus        84 ~tpL~~A~~~~~~-~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  140 (298)
                      .||||+|+...+. ..+.+|+. .+..|          ..++..+.|++.+|-+.+-..
T Consensus       164 ltpLhlaa~~rn~r~t~~~Ll~dryi~p----------g~~nn~eeta~~iARRT~~s~  212 (228)
T KOG0512|consen  164 LTPLHLAAGNRNSRDTLELLLHDRYIHP----------GLKNNLEETAFDIARRTSMSH  212 (228)
T ss_pred             chhhHHhhcccchHHHHHHHhhccccCh----------hhhcCccchHHHHHHHhhhhH
Confidence            9999999987654 44555544 34442          445677889998887775444

>PHA02917 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.6e-19  Score=175.54  Aligned_cols=136  Identities=13%  Similarity=0.096  Sum_probs=109.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC-----------------------------------ChHHHHHHHhCCCCccccCCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQR-----------------------------------RPECVHILLDSGALVCASTGGY   46 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g-----------------------------------~~~~v~~Ll~~ga~~~~~~~~~   46 (298)
                      .|++++.+|..|+||||+|+..|                                   +.++|++|+++|+++|..+.  
T Consensus        57 ~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~--  134 (661)
T PHA02917         57 SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE--  134 (661)
T ss_pred             CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC--
Confidence            47888999999999999887654                                   45677778888888887776  


Q ss_pred             CCCCChHHHHHH--HcCCHHHHHHHHHcCCCCccccc---CC-----------CcHHHHHHh-----------cCcHHHH
Q 041054           47 GCPGSTPLHLAA--RGGSIDCIRELLAWGADRLHRDV---SG-----------RIPYAVALK-----------HKHGACA   99 (298)
Q Consensus        47 ~~~g~TpLh~A~--~~g~~~~v~~Ll~~gad~~~~d~---~g-----------~tpL~~A~~-----------~~~~~~~   99 (298)
                        .|+||||+|+  ..|+.++|++|+++||+++.+|.   .|           .||||+|+.           .++.+++
T Consensus       135 --~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv  212 (661)
T PHA02917        135 --NHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVV  212 (661)
T ss_pred             --CCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHH
Confidence              7899998543  46889999999999998876553   23           489998875           4578899


Q ss_pred             HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH--HHHHHHhcCCCC
Q 041054          100 ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK--EREKNILKGTAY  151 (298)
Q Consensus       100 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~--~~~~~ll~~~~~  151 (298)
                      ++|+++|++          ++.++.+|.||||+|+..++.  +++++|++|++.
T Consensus       213 ~~Li~~Gad----------vn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~  256 (661)
T PHA02917        213 KCLINHGIK----------PSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDN  256 (661)
T ss_pred             HHHHHCCCC----------cccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcc
Confidence            999999988          577889999999999999974  799999988754

>PHA02741 hypothetical protein; Provisional

Probab=99.79  E-value=4.1e-19  Score=145.20  Aligned_cols=103  Identities=27%  Similarity=0.325  Sum_probs=95.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCC----hHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRR----PECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRL   77 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~   77 (298)
                      +++++.+|..|+||||+|+..|+    .+++++|+++|++++.++..   .|+||||+|+..++.+++++|++ .|++++
T Consensus        50 ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~---~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~  126 (169)
T PHA02741         50 AAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML---EGDTALHLAAHRRDHDLAEWLCCQPGIDLH  126 (169)
T ss_pred             hhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC---CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence            57899999999999999999999    58999999999999987631   69999999999999999999998 599999


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      ..|..|+||||+|+..++.+++++|+++++.
T Consensus       127 ~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        127 FCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988664

>PHA02730 ankyrin-like protein; Provisional

Probab=99.79  E-value=6.3e-19  Score=168.50  Aligned_cols=210  Identities=14%  Similarity=0.075  Sum_probs=155.5

Q ss_pred             Ccc-cCCCCCCcHHHHHHHcC---ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC--CHHHHHHHHHcCC--CC
Q 041054            5 FVN-IRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--SIDCIRELLAWGA--DR   76 (298)
Q Consensus         5 ~vn-~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g--~~~~v~~Ll~~ga--d~   76 (298)
                      ++| .+|..|+||||+|+..+   +.++|++||++||+++..+.    .|+||||+|+..+  +.++|++|++.|+  ++
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~----~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~  107 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNN----EGLTPLGVYSKRKYVKSQIVHLLISSYSNASN  107 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCC----CCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc
Confidence            567 88999999999999997   59999999999999999887    8999999999976  7999999999965  55


Q ss_pred             cccccCCCcHHHHHHh--cCcHHHHHHhcc-CCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcCCCCC
Q 041054           77 LHRDVSGRIPYAVALK--HKHGACAALLNP-ASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKGTAYS  152 (298)
Q Consensus        77 ~~~d~~g~tpL~~A~~--~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~~~~~  152 (298)
                      +..+..+.+||+.++.  +++.+++++|+. .+++|...      .+..+ ..+.+++..+...++.+++++|++.+...
T Consensus       108 ~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~------~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v  181 (672)
T PHA02730        108 ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKN------TNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYS  181 (672)
T ss_pred             ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhh------hhhhccccchhhhhHhcCCCchHHHHHHHHcCCcc
Confidence            7788789999999888  899999999996 66774310      01111 26889999999999999999988865432


Q ss_pred             CCCCCCCCCCCcccccccCCCccc--ccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCC--CCCcccccc
Q 041054          153 LPSPSHSDVGADDNISEASDTELC--CICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTP--PVCPFCRST  227 (298)
Q Consensus       153 ~~~p~~~~~~~~~~~~~~~~~~~C--~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~--~~Cp~cr~~  227 (298)
                      .    +..-.     ....+...|  ..+..-..... ..-.+.-.+.+++..+++.+..+..+ ||+|  .+|...+.+
T Consensus       182 ~----g~~~~-----~~~~~~~~c~~~l~~~il~~~~-~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~e  251 (672)
T PHA02730        182 T----GYVFR-----SCMYDSDRCKNSLHYYILSHRE-SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIE  251 (672)
T ss_pred             c----ccccc-----cccccCCccchhHHHHHHhhhh-hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHH
Confidence            1    11000     001122344  11100000000 12245669999999999988777777 9998  577666689


Q ss_pred             cceeEEE
Q 041054          228 IAHLVVV  234 (298)
Q Consensus       228 I~~~~~~  234 (298)
                      |+++|+.
T Consensus       252 iv~~Li~  258 (672)
T PHA02730        252 IVKLLIK  258 (672)
T ss_pred             HHHHHHh
Confidence            9999887

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.79  E-value=1.3e-18  Score=126.70  Aligned_cols=87  Identities=31%  Similarity=0.413  Sum_probs=80.3

Q ss_pred             HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054           17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG   96 (298)
Q Consensus        17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~   96 (298)
                      ||+|++.|+.+++++|++.+.+++.        |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~--------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   72 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL--------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNL   72 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS--------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC--------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCH
Confidence            8999999999999999999987765        67999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCCC
Q 041054           97 ACAALLNPASAEPLV  111 (298)
Q Consensus        97 ~~~~~Ll~~ga~~~~  111 (298)
                      +++++|+++|+++..
T Consensus        73 ~~~~~Ll~~g~~~~~   87 (89)
T PF12796_consen   73 EIVKLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHHHHTTT-TTS
T ss_pred             HHHHHHHHcCCCCCC
Confidence            999999999998643

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02730 ankyrin-like protein; Provisional

Probab=99.78  E-value=1e-18  Score=167.02  Aligned_cols=133  Identities=11%  Similarity=0.044  Sum_probs=112.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCC----hHHHHHHHhCCC--CccccCCCCCCCCChHHHH---HHHcC---------CH
Q 041054            2 YARFVNIRDGRGATPLHLAARQRR----PECVHILLDSGA--LVCASTGGYGCPGSTPLHL---AARGG---------SI   63 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~ga--~~~~~~~~~~~~g~TpLh~---A~~~g---------~~   63 (298)
                      +|+++|.. ..|+||||+|+..++    .+++++|+++|+  +++..+.    .|.||||.   |...+         ..
T Consensus       368 ~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~----~G~T~Lh~~i~a~~~n~~~~~~e~~~~  442 (672)
T PHA02730        368 NGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSN----NGRLCMYGLILSRFNNCGYHCYETILI  442 (672)
T ss_pred             CCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCcccccccc----CCCchHhHHHHHHhccccccccchhHH
Confidence            68999985 799999999998875    899999999998  5777776    79999994   33332         23


Q ss_pred             HHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHh--hhHH
Q 041054           64 DCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALME--ANKE  140 (298)
Q Consensus        64 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~--~~~~  140 (298)
                      +++++|+.+||+++.+|..|.||||+|+..++.+++++|+++|++          ++..+. .|.|||+.|...  ++.+
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd----------IN~~d~~~g~TaL~~Aa~~~~~~~e  512 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS----------VNTTSRSIINTAIQKSSYRRENKTK  512 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC----------CCCCCCcCCcCHHHHHHHhhcCcHH
Confidence            579999999999999999999999999999999999999999999          456665 589999999874  5778


Q ss_pred             HHHHHhcCC
Q 041054          141 REKNILKGT  149 (298)
Q Consensus       141 ~~~~ll~~~  149 (298)
                      ++++|+..+
T Consensus       513 Iv~~LLs~g  521 (672)
T PHA02730        513 LVDLLLSYH  521 (672)
T ss_pred             HHHHHHHcC
Confidence            877776543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=2.8e-19  Score=167.43  Aligned_cols=203  Identities=21%  Similarity=0.232  Sum_probs=164.2

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..+|..|.+|.|+||.|+.+|+.+++++|+++.+-++..+.    .|.+|||+|+++|+.++|+.|+.++..+|..+..|
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~----kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~  115 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT----KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIEN  115 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhc----cCcceEEehhhcCcchHHHHHHhcccCCCcccccC
Confidence            35788999999999999999999999999999999888886    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCC
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGA  163 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~  163 (298)
                      .||||.|++++|.+++.+|+.+|++|.+          .|+.++|+|..|+..+..+++..|+.. ++..+..  ...+ 
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~adp~i----------~nns~~t~ldlA~qfgr~~Vvq~ll~~-~~~~~~~--~~~~-  181 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNADPFI----------RNNSKETVLDLASRFGRAEVVQMLLQK-KFPVQSS--LRVG-  181 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCCCccc----------cCcccccHHHHHHHhhhhHHHHHHhhh-ccchhhc--ccCC-
Confidence            9999999999999999999999999754          678899999999999999999998877 4433321  1111 


Q ss_pred             cccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          164 DDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       164 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                       .. .+.-....|..--        ..-||..|++-+++.+-+.+.....+|.+|.+---....++++++.
T Consensus       182 -~~-~~~~~~~~plHla--------akngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~  242 (854)
T KOG0507|consen  182 -DI-KRPFPAIYPLHLA--------AKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLE  242 (854)
T ss_pred             -CC-CCCCCCcCCcchh--------hhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHh
Confidence             10 0111111111111        1138999999998887777766666688888888788888888775

>PHA02795 ankyrin-like protein; Provisional

Probab=99.78  E-value=8.1e-19  Score=160.56  Aligned_cols=135  Identities=11%  Similarity=0.038  Sum_probs=117.7

Q ss_pred             CCCCcc------cCCCCCCcHHHHHHH--cCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054            2 YARFVN------IRDGRGATPLHLAAR--QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG   73 (298)
Q Consensus         2 ~~~~vn------~~d~~G~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g   73 (298)
                      .++++|      .++..++|+||+|+.  .|+.++|++|+++||+++..      .+.||||+|+..++.+++++|+++|
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~------~~~t~lh~A~~~~~~eIVk~Lls~G  172 (437)
T PHA02795         99 KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI------ECLNAYFRGICKKESSVVEFILNCG  172 (437)
T ss_pred             cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC------CCCCHHHHHHHcCcHHHHHHHHhcC
Confidence            466777      788899999999999  89999999999999999874      3589999999999999999999999


Q ss_pred             CCCccc------ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           74 ADRLHR------DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        74 ad~~~~------d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      ++....      +..+.|++|.|...++.+++++|+++|++          ++.++..|.||||+|+..++.+++++|++
T Consensus       173 a~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD----------IN~kD~~G~TpLh~Aa~~g~~eiVelLL~  242 (437)
T PHA02795        173 IPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED----------INQLDAGGRTLLYRAIYAGYIDLVSWLLE  242 (437)
T ss_pred             CcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC----------cCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            854322      23478999999999999999999999999          67889999999999999999998888776


Q ss_pred             C-CCCC
Q 041054          148 G-TAYS  152 (298)
Q Consensus       148 ~-~~~~  152 (298)
                      . +++.
T Consensus       243 ~GAdIN  248 (437)
T PHA02795        243 NGANVN  248 (437)
T ss_pred             CCCCCC
Confidence            4 4443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=2.5e-18  Score=151.42  Aligned_cols=103  Identities=20%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             CCCCcccCC----CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054            2 YARFVNIRD----GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL   77 (298)
Q Consensus         2 ~~~~vn~~d----~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~   77 (298)
                      +|+++|.++    ..|.||||+|+..++.+++++|+++||++|..+..   .|.||||+|+..++.+++++|++.|++++
T Consensus        55 ~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~---~g~TpLh~Aa~~~~~eivklLL~~GAdin  131 (300)
T PHA02884         55 LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEE---AKITPLYISVLHGCLKCLEILLSYGADIN  131 (300)
T ss_pred             CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            688999874    68999999999999999999999999999986431   69999999999999999999999999999


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASA  107 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga  107 (298)
                      .+|..|.||||+|+..++.+++.++...+.
T Consensus       132 ~kd~~G~TpL~~A~~~~~~~~~~~~~~~~~  161 (300)
T PHA02884        132 IQTNDMVTPIELALMICNNFLAFMICDNEI  161 (300)
T ss_pred             CCCCCCCCHHHHHHHhCChhHHHHhcCCcc
Confidence            999999999999999999888877765443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.78  E-value=1.5e-18  Score=168.88  Aligned_cols=147  Identities=18%  Similarity=0.098  Sum_probs=113.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcC------------------
Q 041054            3 ARFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG------------------   61 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g------------------   61 (298)
                      +..++.+|.+|+||||+|+..   |+.++|++||+.|++++..+.    .|+||||+|+..|                  
T Consensus        22 ~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~----~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~   97 (661)
T PHA02917         22 RDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW----RQLTPLEEYTNSRHVKVNKDIAMALLEATGY   97 (661)
T ss_pred             cCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC----CCCCHHHHHHHcCChhHHHHHHHHHHhccCC
Confidence            455678899999999998655   889999999999999998776    7999999777643                  


Q ss_pred             -----------------CHHHHHHHHHcCCCCcccccCCCcHHHHHH--hcCcHHHHHHhccCCCCCCCCCCCh----hh
Q 041054           62 -----------------SIDCIRELLAWGADRLHRDVSGRIPYAVAL--KHKHGACAALLNPASAEPLVWPSPL----KF  118 (298)
Q Consensus        62 -----------------~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~--~~~~~~~~~~Ll~~ga~~~~~~~~~----~~  118 (298)
                                       +.++|++|+++|+|++.+|..|+||||+|+  ..++.+++++|+++|+++.......    .+
T Consensus        98 ~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~  177 (661)
T PHA02917         98 SNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY  177 (661)
T ss_pred             CCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence                             567889999999999999999999999654  5789999999999999964311000    00


Q ss_pred             hhHhhHHHHHHHHHHHH-----------hhhHHHHHHHhc-CCCCCC
Q 041054          119 ISELNQEAKALLENALM-----------EANKEREKNILK-GTAYSL  153 (298)
Q Consensus       119 ~~~~~~~~~t~L~~A~~-----------~~~~~~~~~ll~-~~~~~~  153 (298)
                      .......+.|+||+|+.           .++.+++++|+. |+++..
T Consensus       178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~  224 (661)
T PHA02917        178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS  224 (661)
T ss_pred             ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence            11122345799999976           346788887764 666554

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.77  E-value=6e-19  Score=141.99  Aligned_cols=101  Identities=21%  Similarity=0.255  Sum_probs=92.1

Q ss_pred             cccCCCCCCcHHHHHHHcCCh---HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCccccc
Q 041054            6 VNIRDGRGATPLHLAARQRRP---ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDV   81 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~   81 (298)
                      ++.+|..|+||||+|+..|+.   +++++|++.|++++.++..   .|+||||+|+..++.+++++|+.. |++++.+|.
T Consensus        48 ~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~---~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~  124 (154)
T PHA02736         48 VLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV---FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNY  124 (154)
T ss_pred             HHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC---CCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccC
Confidence            345789999999999999987   4688999999999987632   699999999999999999999984 999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEP  109 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~  109 (298)
                      .|.||||+|+..++.+++++|+.+|++.
T Consensus       125 ~g~tpL~~A~~~~~~~i~~~Ll~~ga~~  152 (154)
T PHA02736        125 AFKTPYYVACERHDAKMMNILRAKGAQC  152 (154)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999874

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=1.3e-17  Score=127.70  Aligned_cols=126  Identities=37%  Similarity=0.503  Sum_probs=113.2

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054            7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      +.+|.+|+||||+|+..++.+++++|++.+.+.+..+.    .|.||||+|+..++.+++++|++.|++++..+..|.||
T Consensus         1 ~~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~----~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   76 (126)
T cd00204           1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN----DGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTP   76 (126)
T ss_pred             CCcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            35678899999999999999999999999998766666    79999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      +|+|+..++.+++++|+.++.+          ....+..+.++++.|...+..+.++.|+
T Consensus        77 l~~a~~~~~~~~~~~L~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKHGAD----------VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999865          3556677889999999998888877663

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.74  E-value=3.1e-18  Score=170.03  Aligned_cols=140  Identities=31%  Similarity=0.318  Sum_probs=116.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC-----------------------------CCCCCCCh
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG-----------------------------GYGCPGST   52 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~-----------------------------~~~~~g~T   52 (298)
                      |+.++|..-..|.||||.|+..|+.++++.|++.++..+....                             ..+..|+|
T Consensus       463 ~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~T  542 (1143)
T KOG4177|consen  463 YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYT  542 (1143)
T ss_pred             cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccc
Confidence            6777888888888888888888888877777776643332221                             11237899


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHH
Q 041054           53 PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLEN  132 (298)
Q Consensus        53 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~  132 (298)
                      |||+|+..|+..+|++||++|||++.+++.|+||||.|+..|+.+|+.+|+++|++          ++..+.++.|||++
T Consensus       543 pLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----------vna~d~~g~TpL~i  612 (1143)
T KOG4177|consen  543 PLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----------VNAADLDGFTPLHI  612 (1143)
T ss_pred             hHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC----------CCcccccCcchhHH
Confidence            99999999999999999999999999999999999999999999999999999999          57788999999999


Q ss_pred             HHHhhhHHHHHHHhcCCCC
Q 041054          133 ALMEANKEREKNILKGTAY  151 (298)
Q Consensus       133 A~~~~~~~~~~~ll~~~~~  151 (298)
                      |...+...++++++.....
T Consensus       613 A~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  613 AVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHhcccchhhHHHhccCc
Confidence            9999999999888775543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.74  E-value=6.1e-18  Score=132.89  Aligned_cols=121  Identities=27%  Similarity=0.243  Sum_probs=107.3

Q ss_pred             HHHHHHHcCChHHHHHHHhCCCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           16 PLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        16 pLh~Aa~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                      -+.+|+..+....|+.||+..++ +|.++.    .|+||||-|+++|+.+||+.|+..||+++.+...|+||||-|+..+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~----D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDE----DEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhcccccccccc----ccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            36789999999999999988665 677777    8999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH-HHHHHhcCCC
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKE-REKNILKGTA  150 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~-~~~~ll~~~~  150 (298)
                      +.+++-+|+++|++          +++......||||.|+...+.. .+.+|+...-
T Consensus       142 N~~va~~LLqhgaD----------VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dry  188 (228)
T KOG0512|consen  142 NFEVAGRLLQHGAD----------VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRY  188 (228)
T ss_pred             chhHHHHHHhccCc----------ccccccccchhhHHhhcccchHHHHHHHhhccc
Confidence            99999999999999          6778888899999999876554 6666665543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.73  E-value=2.5e-18  Score=139.86  Aligned_cols=134  Identities=21%  Similarity=0.161  Sum_probs=117.9

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.-.|..+--+++|+++++...+++.+..|.++  .+|..+.    .|.|||+||+.+|++++|++||+.|||++..-+.
T Consensus       119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De----~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~  192 (296)
T KOG0502|consen  119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDE----FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKY  192 (296)
T ss_pred             cccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccc----cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhh
Confidence            455778888899999999998888887766654  4556666    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYS  152 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~  152 (298)
                      ..|+|.+|...|..+++++|+..+.+          ++..|.+|.|||-+|++.++.++++.|+.. ++..
T Consensus       193 resALsLAt~ggytdiV~lLL~r~vd----------VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t  253 (296)
T KOG0502|consen  193 RESALSLATRGGYTDIVELLLTREVD----------VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT  253 (296)
T ss_pred             hhhhHhHHhcCChHHHHHHHHhcCCC----------cceeccCCCceeeeeecCChHHHHHHHHhcCCCcc
Confidence            99999999999999999999999998          678899999999999999999988877765 4443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.73  E-value=3.3e-17  Score=164.39  Aligned_cols=127  Identities=25%  Similarity=0.229  Sum_probs=113.2

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      .+..+.++||.||..|+.++++.|++.|+++|..+.    .|+||||+|+..|+.+++++|+++|++++.+|.+|+||||
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~----~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~  596 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDS----KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALW  596 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            344678999999999999999999999999998887    8999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAY  151 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~  151 (298)
                      +|+..|+.+++++|++.++...            ...+.++|+.|+..++.++++.|++. +++
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadi  648 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISD------------PHAAGDLLCTAAKRNDLTAMKELLKQGLNV  648 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccC------------cccCchHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            9999999999999998876521            23456899999999999988887764 443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.72  E-value=1.3e-17  Score=117.69  Aligned_cols=104  Identities=26%  Similarity=0.356  Sum_probs=93.3

Q ss_pred             cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                      --+++++++|.++-|+..+..|.++|..-+     |+||||||+-.|.++++++|+..||+++.+|++|-|||--|+..|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~~g-----gR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEIYG-----GRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEG   78 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHHhC-----CcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHh
Confidence            457899999999999999999988887764     999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHH
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENA  133 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A  133 (298)
                      |.+|+++|++.|++.          ....++|.+.++.+
T Consensus        79 H~~cVklLL~~GAdr----------t~~~PdG~~~~eat  107 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADR----------TIHAPDGTALIEAT  107 (117)
T ss_pred             hHHHHHHHHHcCccc----------ceeCCCchhHHhhc
Confidence            999999999999994          44566676666543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.70  E-value=1.9e-17  Score=150.31  Aligned_cols=135  Identities=27%  Similarity=0.305  Sum_probs=110.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc----
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL----   77 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~----   77 (298)
                      .+..+|..+.+|.|+||.++...+.++|++|+++|++||..++    .||||||.|+..|++.++++|+.+||++.    
T Consensus        62 ~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~----e~wtPlhaaascg~~~i~~~li~~gA~~~avNs  137 (527)
T KOG0505|consen   62 RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDN----EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNS  137 (527)
T ss_pred             cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcccccc----ccCCcchhhcccccHHHHHHHHHhhhhhhhccC
Confidence            4567788888999999999999999999999999999998888    89999999999999999999988775432    


Q ss_pred             -------------------------------------------------------ccccCCCcHHHHHHhcCcHHHHHHh
Q 041054           78 -------------------------------------------------------HRDVSGRIPYAVALKHKHGACAALL  102 (298)
Q Consensus        78 -------------------------------------------------------~~d~~g~tpL~~A~~~~~~~~~~~L  102 (298)
                                                                             ..+..|-|.||+|+.+|..+++++|
T Consensus       138 dg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  138 DGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALL  217 (527)
T ss_pred             CCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHH
Confidence                                                                   2334578888888889999999999


Q ss_pred             ccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCC
Q 041054          103 NPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTA  150 (298)
Q Consensus       103 l~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~  150 (298)
                      +++|.+          .+.+|.+|++|||.|+..+..++.++|.. +++
T Consensus       218 l~ag~~----------~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  218 LQAGYS----------VNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             HHhccC----------cccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            988888          46678888999999988888887766554 444

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.70  E-value=2.1e-17  Score=164.24  Aligned_cols=135  Identities=28%  Similarity=0.326  Sum_probs=121.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC-ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH---------
Q 041054            2 YARFVNIRDGRGATPLHLAARQR-RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA---------   71 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~---------   71 (298)
                      .+++++..|..|.||+|+|+..| ..+....+++.|+++|....    .|.||||+|+..|+.++++.|++         
T Consensus       429 ~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~----~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~  504 (1143)
T KOG4177|consen  429 RGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSK----QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDA  504 (1143)
T ss_pred             cCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhcc----ccCcchhhhhccCCchHHHHhhhcCCccCccc
Confidence            47889999999999999999999 89999999999999999888    78999999988888887777775         


Q ss_pred             ------------------------cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054           72 ------------------------WGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK  127 (298)
Q Consensus        72 ------------------------~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  127 (298)
                                              +|++++.++.+|.||||+|+..|+.++|++|+++|++          ++.+++.|+
T Consensus       505 ~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd----------v~ak~~~G~  574 (1143)
T KOG4177|consen  505 KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD----------VNAKDKLGY  574 (1143)
T ss_pred             hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc----------ccccCCCCC
Confidence                                    4567778888999999999999999999999999999          677889999


Q ss_pred             HHHHHHHHhhhHHHHHHHhcCCC
Q 041054          128 ALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus       128 t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      ||||.|+..+..+++.+|++.+.
T Consensus       575 TPLH~Aa~~G~~~i~~LLlk~GA  597 (1143)
T KOG4177|consen  575 TPLHQAAQQGHNDIAELLLKHGA  597 (1143)
T ss_pred             ChhhHHHHcChHHHHHHHHHcCC
Confidence            99999999999998888877544

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.69  E-value=1.8e-17  Score=150.48  Aligned_cols=124  Identities=27%  Similarity=0.284  Sum_probs=109.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCC----------------------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYG----------------------------------   47 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~----------------------------------   47 (298)
                      +|++||..|..||||||.|+-.||..++++|+++|+++...+...+                                  
T Consensus        95 ~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e  174 (527)
T KOG0505|consen   95 NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE  174 (527)
T ss_pred             hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence            7899999999999999999999999999999999987655442211                                  


Q ss_pred             ---------------------CCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCC
Q 041054           48 ---------------------CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS  106 (298)
Q Consensus        48 ---------------------~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g  106 (298)
                                           ..|-|+||.|+.+|..++.++|+++|.+++.+|.+|+||||.|+..|..+++++|+++|
T Consensus       175 ~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g  254 (527)
T KOG0505|consen  175 QTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG  254 (527)
T ss_pred             HHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence                                 34899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054          107 AEPLVWPSPLKFISELNQEAKALLENALM  135 (298)
Q Consensus       107 a~~~~~~~~~~~~~~~~~~~~t~L~~A~~  135 (298)
                      ++          ++.....|.+|+..|..
T Consensus       255 a~----------~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  255 AD----------MDAKTKMGETPLDVADE  273 (527)
T ss_pred             cc----------cchhhhcCCCCccchhh
Confidence            98          45566667777666654

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=5.5e-16  Score=154.31  Aligned_cols=125  Identities=26%  Similarity=0.268  Sum_probs=105.8

Q ss_pred             CCCcccCCCCCCcHHH-HHHHcCChHHHHHHHhCCCCcc--------------------------------------ccC
Q 041054            3 ARFVNIRDGRGATPLH-LAARQRRPECVHILLDSGALVC--------------------------------------AST   43 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh-~Aa~~g~~~~v~~Ll~~ga~~~--------------------------------------~~~   43 (298)
                      +.++|..|..|+|||| .|+.+++.+++++|+++|+..+                                      ...
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccc
Confidence            5688999999999999 8889999999999999884100                                      000


Q ss_pred             CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc--------------cCCCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054           44 GGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD--------------VSGRIPYAVALKHKHGACAALLNPASAEP  109 (298)
Q Consensus        44 ~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d--------------~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~  109 (298)
                      ...+..|.||||+|+..|+.++|++|+++|++++.++              ..|.||||+|+..++.+++++|+++|++ 
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-  200 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-  200 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-
Confidence            0011359999999999999999999999999998753              2589999999999999999999999998 


Q ss_pred             CCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054          110 LVWPSPLKFISELNQEAKALLENALMEA  137 (298)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~t~L~~A~~~~  137 (298)
                               ++..|..|.|+||.|+..+
T Consensus       201 ---------in~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       201 ---------ILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             ---------hhhHhhhhhHHHHHHHhhh
Confidence                     6788999999999999886

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.67  E-value=1.4e-16  Score=150.95  Aligned_cols=130  Identities=30%  Similarity=0.266  Sum_probs=116.9

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCC-------------------CCCCChHHHHHHHcCCHHHHHHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGY-------------------GCPGSTPLHLAARGGSIDCIRELLA   71 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~-------------------~~~g~TpLh~A~~~g~~~~v~~Ll~   71 (298)
                      ..|.||||+|+.+.+.++|++||+.||||+.+..+.                   =+.|..||.+||..++.+++++|++
T Consensus       182 Y~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~  261 (782)
T KOG3676|consen  182 YYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLA  261 (782)
T ss_pred             hcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHh
Confidence            479999999999999999999999999999654210                   1368899999999999999999999


Q ss_pred             cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           72 WGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        72 ~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      +|||++.+|..|+|.||..+.+-..+|..+++++|+++.        ....|..|.|||..|+..++.++.+.|++.
T Consensus       262 ~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l--------~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  262 HGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANAL--------EHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCcc--------ccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999999999832        356789999999999999999998888776

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.66  E-value=8.9e-17  Score=159.96  Aligned_cols=135  Identities=26%  Similarity=0.158  Sum_probs=111.4

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC----------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGG----------YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR   79 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~----------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~   79 (298)
                      +..|.||||+||..|+.++|++||++|++++.....          ....|.||||+|+..|+.+++++|+++|+|++.+
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            357999999999999999999999999999965421          1135899999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHhcC---------cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           80 DVSGRIPYAVALKHK---------HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        80 d~~g~tpL~~A~~~~---------~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      |..|+||||+|+..+         ...+.++++..++....   +.......|.+|.|||+.|+..++.++.+++++
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~---~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRD---SKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCC---hHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence            999999999999986         23466677666554221   112224568889999999999999999998877

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02792 ankyrin-like protein; Provisional

Probab=99.64  E-value=4.1e-16  Score=147.97  Aligned_cols=131  Identities=11%  Similarity=0.073  Sum_probs=86.3

Q ss_pred             CCcccCCCCCCcHHHHH-HHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCc----
Q 041054            4 RFVNIRDGRGATPLHLA-ARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR-GGSIDCIRELLAWGADRL----   77 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~A-a~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~-~g~~~~v~~Ll~~gad~~----   77 (298)
                      ..++..+.+|.+++|+- ..+|+.|+|++|+.+||++|..++    .|.||||+|+. .++.|++++|++.||++.    
T Consensus        62 ~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n----~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~  137 (631)
T PHA02792         62 SSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINSIKN----GINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQ  137 (631)
T ss_pred             hCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCcccccC----CCCcceeEeecCCCChHHHHHHHHCCCCcccccc
Confidence            34556666677777654 355677777777777777776665    56677777754 577777777777776522    


Q ss_pred             --------------------------------ccccCCCcHHHHHHhcC-------cHHHHHHhccCCCCCCCCCCChhh
Q 041054           78 --------------------------------HRDVSGRIPYAVALKHK-------HGACAALLNPASAEPLVWPSPLKF  118 (298)
Q Consensus        78 --------------------------------~~d~~g~tpL~~A~~~~-------~~~~~~~Ll~~ga~~~~~~~~~~~  118 (298)
                                                      ..|..|.||||+|+..+       +.+++++|+++|++          
T Consensus       138 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~----------  207 (631)
T PHA02792        138 YGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE----------  207 (631)
T ss_pred             cCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC----------
Confidence                                            23445777777777776       67777777777776          


Q ss_pred             hhHhhHHHHHHHHHHHHhh--hHHHHHHHhcC
Q 041054          119 ISELNQEAKALLENALMEA--NKEREKNILKG  148 (298)
Q Consensus       119 ~~~~~~~~~t~L~~A~~~~--~~~~~~~ll~~  148 (298)
                      ++..+..|.||||+|+...  ..+++++|...
T Consensus       208 ~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        208 MRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             cCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence            4555666777777777766  56666666554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.64  E-value=4.9e-16  Score=135.06  Aligned_cols=96  Identities=34%  Similarity=0.391  Sum_probs=89.5

Q ss_pred             CcccCC-CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccC
Q 041054            5 FVNIRD-GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVS   82 (298)
Q Consensus         5 ~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~   82 (298)
                      +||++- ..|+|+||+|+.+|+.++|+.||..|||+|.++.    +|.|+||.|+.+||.|+|++||.. ++|+...|.+
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd----DGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~D  406 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDD----DGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVD  406 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccC----CccHHHhhhhhhChHHHHHHHhccCcccceeecCC
Confidence            577665 4699999999999999999999999999999998    899999999999999999999988 8999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhcc
Q 041054           83 GRIPYAVALKHKHGACAALLNP  104 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~  104 (298)
                      |-|+|.+|...||.+|.-+|-.
T Consensus       407 gSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  407 GSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             CchhhhhHHhcCchHHHHHHHH
Confidence            9999999999999999887743

>PHA02792 ankyrin-like protein; Provisional

Probab=99.62  E-value=1.8e-15  Score=143.69  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=99.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHH---HHHHHHHcCCCCcccccCCCcHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID---CIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~---~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      .+..+++.||..|+.++|++|+++||+++..+..  ..+.||||+|+.....+   ++++|+++||+++.+|..|.||||
T Consensus       338 ~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh  415 (631)
T PHA02792        338 KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILY  415 (631)
T ss_pred             CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--CCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHH
Confidence            3667899999999999999999999999988761  02579999988776654   688999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALM  135 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~  135 (298)
                      +|+..++.+++++|+++|++          ++.++..|.|||+.|..
T Consensus       416 ~Aa~~~n~eivelLLs~GAD----------IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        416 YCIESHSVSLVEWLIDNGAD----------INITTKYGSTCIGICVI  452 (631)
T ss_pred             HHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHH
Confidence            99999999999999999999          57788899999999976

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.62  E-value=2.2e-15  Score=127.09  Aligned_cols=130  Identities=35%  Similarity=0.397  Sum_probs=118.5

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC-----HHHHHHHHHcCC---CCc
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS-----IDCIRELLAWGA---DRL   77 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga---d~~   77 (298)
                      .+..+..+.+++|.++..+..+++++|+..|++++..+.    .|.||||+|+..++     .+++++|++.|+   +.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~  141 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDA----DGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN  141 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccC----CCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc
Confidence            345667799999999999999999999999999988887    89999999999999     999999999999   666


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .+|..|.||||+|+..|+.+++++|++.|+++          ...+..+.|+++.|...+..+.++.+.+..
T Consensus       142 ~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~----------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 LRDEDGNTPLHWAALNGDADIVELLLEAGADP----------NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ccCCCCCchhHHHHHcCchHHHHHHHhcCCCC----------cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            67999999999999999999999999999984          445889999999999999999888887754

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.61  E-value=2e-15  Score=127.54  Aligned_cols=98  Identities=36%  Similarity=0.378  Sum_probs=92.1

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      +.||.+|..|.|+|..|+..|+.+.|++||+.|+|+|.....   .++||||+|+..|+.++.++|++.|+.+...|.-|
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg---~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvg  112 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHG---TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVG  112 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccc---ccccHHHHHHHcCCchHHHHHHhccCccccccchh
Confidence            568999999999999999999999999999999999986654   78999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhcc
Q 041054           84 RIPYAVALKHKHGACAALLNP  104 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~  104 (298)
                      +|+-..|+.-|+.+||..+..
T Consensus       113 rTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             hhHHHHHHHhcchHHHHHHhc
Confidence            999999999999999887744

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.58  E-value=7e-15  Score=106.91  Aligned_cols=64  Identities=39%  Similarity=0.573  Sum_probs=59.2

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      |.||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADINSQDK----NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST----TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            89999999999999999999999999999987    89999999999999999999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.58  E-value=7.9e-16  Score=144.57  Aligned_cols=146  Identities=25%  Similarity=0.254  Sum_probs=121.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      |.+.++..|..|.+|||+|+++|+.++|++||.++..+|....    +|.||||.|+..|+.+++.+|+.+|+|+-.+|.
T Consensus        71 ~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~----e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nn  146 (854)
T KOG0507|consen   71 YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNI----ENETPLHLAAQHGHLEVVFYLLKKNADPFIRNN  146 (854)
T ss_pred             chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccc----cCcCccchhhhhcchHHHHHHHhcCCCccccCc
Confidence            4566788999999999999999999999999999988888877    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYSL  153 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~  153 (298)
                      .+.|+|.+|++.|..+++++|++....... ..+.. ...++..+.++||.|..+++.+++..|+. |.+++.
T Consensus       147 s~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~-~~~~~-~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  147 SKETVLDLASRFGRAEVVQMLLQKKFPVQS-SLRVG-DIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             ccccHHHHHHHhhhhHHHHHHhhhccchhh-cccCC-CCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence            999999999999999999999887222111 11111 23345567789999999999998887766 455443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.56  E-value=4e-15  Score=98.46  Aligned_cols=55  Identities=45%  Similarity=0.578  Sum_probs=26.8

Q ss_pred             HHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           32 LLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        32 Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      ||++| ++++..+.    .|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~----~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDK----YGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---T----TS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCC----CCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46666 66666666    677888888888888888888877888888888888888776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=1.4e-14  Score=141.88  Aligned_cols=86  Identities=30%  Similarity=0.398  Sum_probs=83.5

Q ss_pred             HHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCc
Q 041054           16 PLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH   95 (298)
Q Consensus        16 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~   95 (298)
                      .||.|+..|+.+.|++|++.|+++|..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~----~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDY----DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            58899999999999999999999998887    89999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccC
Q 041054           96 GACAALLNPA  105 (298)
Q Consensus        96 ~~~~~~Ll~~  105 (298)
                      .+++++|+.+
T Consensus       161 ~~iv~~Ll~~  170 (664)
T PTZ00322        161 REVVQLLSRH  170 (664)
T ss_pred             HHHHHHHHhC
Confidence            9999999998

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=1.4e-14  Score=102.35  Aligned_cols=81  Identities=33%  Similarity=0.380  Sum_probs=72.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      +||..= .|+||||||+-+|..+++++|+..||+++.++.    .|.|||.-|+..||.+||++||..|||...+..+|.
T Consensus        27 nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK----ygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~  101 (117)
T KOG4214|consen   27 NVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDK----YGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGT  101 (117)
T ss_pred             cHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccc----cCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCch
Confidence            444433 799999999999999999999999999999988    899999999999999999999999999999888888


Q ss_pred             cHHHHH
Q 041054           85 IPYAVA   90 (298)
Q Consensus        85 tpL~~A   90 (298)
                      +.+..+
T Consensus       102 ~~~eat  107 (117)
T KOG4214|consen  102 ALIEAT  107 (117)
T ss_pred             hHHhhc
Confidence            766543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.5e-14  Score=94.02  Aligned_cols=54  Identities=50%  Similarity=0.733  Sum_probs=28.4

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL   70 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll   70 (298)
                      |+||||+|++.|+.+++++|+++|.+++.++.    .|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~----~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE----DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T----TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHccCHHHHHHHC
Confidence            45566666666666666666666666555544    5666666666666666666554

...

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=4.1e-14  Score=119.32  Aligned_cols=101  Identities=36%  Similarity=0.412  Sum_probs=93.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCC-----hHHHHHHHhCCC---CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054            2 YARFVNIRDGRGATPLHLAARQRR-----PECVHILLDSGA---LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG   73 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g   73 (298)
                      .+.+++.+|..|.||||+|+..++     .+++++||+.|+   ..+..+.    .|+||||+|+..|+.+++++|++.|
T Consensus        95 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~----~g~tpl~~A~~~~~~~~~~~ll~~~  170 (235)
T COG0666          95 SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE----DGNTPLHWAALNGDADIVELLLEAG  170 (235)
T ss_pred             cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC----CCCchhHHHHHcCchHHHHHHHhcC
Confidence            367889999999999999999999     999999999999   4444455    8999999999999999999999999


Q ss_pred             CCCcccccCCCcHHHHHHhcCcHHHHHHhccCC
Q 041054           74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPAS  106 (298)
Q Consensus        74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g  106 (298)
                      ++++..+..|.|++++|+..++.+++.+|+..+
T Consensus       171 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         171 ADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2e-14  Score=94.46  Aligned_cols=54  Identities=39%  Similarity=0.550  Sum_probs=46.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhc
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN  103 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll  103 (298)
                      |+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999999999999999999999999999999985

...

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.49  E-value=7.2e-15  Score=124.39  Aligned_cols=117  Identities=22%  Similarity=0.315  Sum_probs=98.1

Q ss_pred             HHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHH
Q 041054           21 ARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACA   99 (298)
Q Consensus        21 a~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~   99 (298)
                      |+.|+.-.|++-|+. .-|.|.-++    .|.+|||||++.|+..+|+.|+.+|+.+|..+....||||+|+.+||.+++
T Consensus         8 cregna~qvrlwld~tehdln~gdd----hgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdiv   83 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDD----HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIV   83 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccc----cCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHH
Confidence            455555445544443 556666665    899999999999999999999999999999999999999999999999999


Q ss_pred             HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh-cCCCC
Q 041054          100 ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL-KGTAY  151 (298)
Q Consensus       100 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll-~~~~~  151 (298)
                      +.|+++.++          ++..+..|.||||+|+..+...+.+-|+ .|+..
T Consensus        84 qkll~~kad----------vnavnehgntplhyacfwgydqiaedli~~ga~v  126 (448)
T KOG0195|consen   84 QKLLSRKAD----------VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV  126 (448)
T ss_pred             HHHHHHhcc----------cchhhccCCCchhhhhhhcHHHHHHHHHhcccee
Confidence            999999998          7889999999999999999888655554 45543

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.48  E-value=5e-13  Score=102.04  Aligned_cols=97  Identities=46%  Similarity=0.634  Sum_probs=90.1

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|.||||+|+..++.+++++|++.+++++..+.    .|.||+|+|+..++.+++++|+..+.+++..+..
T Consensus        30 ~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~  105 (126)
T cd00204          30 GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDK----DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD  105 (126)
T ss_pred             CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC
Confidence            445578899999999999999999999999999988887775    7999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhc
Q 041054           83 GRIPYAVALKHKHGACAALLN  103 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll  103 (298)
                      +.||+++|...++.+++++|+
T Consensus       106 ~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204         106 GRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             CCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.47  E-value=5.6e-14  Score=92.96  Aligned_cols=51  Identities=47%  Similarity=0.589  Sum_probs=33.7

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHH
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLA   57 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A   57 (298)
                      ..++|.+|..|.||||+||.+|+.++|++||+.|++++.++.    .|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~----~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDK----DGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---T----TS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC----CCCCHHHhC
Confidence            378999999999999999999999999999999999999998    899999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.42  E-value=3.3e-13  Score=122.41  Aligned_cols=90  Identities=21%  Similarity=0.202  Sum_probs=83.7

Q ss_pred             HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054           17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG   96 (298)
Q Consensus        17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~   96 (298)
                      |.-|+..|.+++|+..+..--|+...++    +|.||||-|+..||.+||++||++|+++|..|.+||||||.|+.-++.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNd----EGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPND----EGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCc----cchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCch
Confidence            4558899999999999988778877777    899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCCC
Q 041054           97 ACAALLNPASAEPL  110 (298)
Q Consensus        97 ~~~~~Ll~~ga~~~  110 (298)
                      .+++.|+++|+-.+
T Consensus       630 ~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  630 PMCKQLVESGAAVF  643 (752)
T ss_pred             HHHHHHHhccceEE
Confidence            99999999999743

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=1.1e-12  Score=111.04  Aligned_cols=122  Identities=22%  Similarity=0.157  Sum_probs=107.5

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCcHHHHHH
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH-RDVSGRIPYAVAL   91 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~A~   91 (298)
                      -..||.-++-.|..+....||+---++|..|.    .|+|+|..|+..|+.++|++||+.|+|+|. ++..+.||||+|+
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~----sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDP----SGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCC----CcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            46799999999999999999987666888887    899999999999999999999999999987 4566999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ..|+.++.++|++.|+.+.          ..|.-|+|+-..|+.-|+-+.+..|-..
T Consensus        88 LSGn~dvcrllldaGa~~~----------~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMY----------LVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HcCCchHHHHHHhccCccc----------cccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999999954          4677889999999998888877766443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.38  E-value=5.4e-13  Score=129.72  Aligned_cols=203  Identities=22%  Similarity=0.205  Sum_probs=128.5

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      |+++..+|+.|.+||++|+-.||..+|+.||.+-++++.+.+.   .+.|+|.+|+..|..++|++||..|++-..++-.
T Consensus       780 ganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdr---tkdt~lSlacsggr~~vvelLl~~gankehrnvs  856 (2131)
T KOG4369|consen  780 GANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDR---TKDTMLSLACSGGRTRVVELLLNAGANKEHRNVS  856 (2131)
T ss_pred             cccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhccc---ccCceEEEecCCCcchHHHHHHHhhccccccchh
Confidence            4666777777777777777777777777777777777665442   6777777777777777777777777777777777


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCCCCCCCCCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYSLPSPSHSDV  161 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~~p~~~~~  161 (298)
                      ..|||.+|...|+.+++.+|+.+|++.+.        ..-.+-|..||..|.++++.+..+.|++ |.+++-..+..-. 
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInS--------rtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrn-  927 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINS--------RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRN-  927 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhccccccc--------ccccccCcchhhhhhhccccHHHHHHhcccchhccccccccc-
Confidence            77777777777777777777777766322        1223456678888888888776666555 3333322211110 


Q ss_pred             CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEEeec
Q 041054          162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIEN  238 (298)
Q Consensus       162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~  238 (298)
                                 ..+=.-|+.          |....+..+|+.-+..--...++ ||+...-..+.-.+-++|++....
T Consensus       928 -----------Taltla~fq----------gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad  984 (2131)
T KOG4369|consen  928 -----------TALTLALFQ----------GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGAD  984 (2131)
T ss_pred             -----------cceeecccc----------CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccc
Confidence                       011111222          33344555666655655555555 777777777777777777765443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.37  E-value=1.1e-12  Score=125.00  Aligned_cols=137  Identities=25%  Similarity=0.249  Sum_probs=112.3

Q ss_pred             CCcccCCCCCCcHHHHHHHc---CChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054            4 RFVNIRDGRGATPLHLAARQ---RRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR   79 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~   79 (298)
                      .+++.+..-|+|.||.|..+   ++.++++.||+.-. -+|..-....+.|.||||+|+.+.+.++|++|++.|||++++
T Consensus       134 w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aR  213 (782)
T KOG3676|consen  134 WKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHAR  213 (782)
T ss_pred             hccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhH
Confidence            46778888999999999974   46689999998632 233322222347999999999999999999999999999864


Q ss_pred             ---------cc--------------CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054           80 ---------DV--------------SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALME  136 (298)
Q Consensus        80 ---------d~--------------~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~  136 (298)
                               |.              .|..||.+|+--++.+|+++|+++|||          ++..|.+|.|.||..+..
T Consensus       214 a~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd----------~~aqDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  214 ACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD----------PNAQDSNGNTVLHMLVIH  283 (782)
T ss_pred             hhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC----------CCccccCCChHHHHHHHH
Confidence                     11              377899999999999999999999999          477899999999999999


Q ss_pred             hhHHHHHHHhc-CCC
Q 041054          137 ANKEREKNILK-GTA  150 (298)
Q Consensus       137 ~~~~~~~~ll~-~~~  150 (298)
                      -..++-.+++. +++
T Consensus       284 ~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  284 FVTEMYDLALELGAN  298 (782)
T ss_pred             HHHHHHHHHHhcCCC
Confidence            88888777665 444

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.36  E-value=2.1e-13  Score=132.54  Aligned_cols=191  Identities=19%  Similarity=0.099  Sum_probs=157.7

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc-cccCCCcHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH-RDVSGRIPYAV   89 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~-~d~~g~tpL~~   89 (298)
                      .+-.|+|-.||..||.|.|++|+..|+++..++.    .|.+||.+|+-.||..+|+.|+.+.++++. .|..+.|+|.+
T Consensus       755 ~n~~t~LT~acaggh~e~vellv~rganiehrdk----kgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  755 PNIKTNLTSACAGGHREEVELLVVRGANIEHRDK----KGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccccccccCccHHHHHHHHHhccccccccc----ccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE
Confidence            3457999999999999999999999999999888    899999999999999999999999999987 56779999999


Q ss_pred             HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCccccc
Q 041054           90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNIS  168 (298)
Q Consensus        90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~  168 (298)
                      |+..|+.+++++||.+|++          ...++....|||..|..-+..+++..|+..+ .++...-++..  .     
T Consensus       831 acsggr~~vvelLl~~gan----------kehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklg--i-----  893 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGAN----------KEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLG--I-----  893 (2131)
T ss_pred             ecCCCcchHHHHHHHhhcc----------ccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccC--c-----
Confidence            9999999999999999998          4667888899999999999999998887654 33322211111  0     


Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC--CCCCCCCcccccccceeEEEEe
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA--CLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~--~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                                    .+.....--||+.-+.-++.-+.+.+.+-.|.  |.+..+|+..|..++.+|++.-
T Consensus       894 --------------sPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~  949 (2131)
T KOG4369|consen  894 --------------SPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ  949 (2131)
T ss_pred             --------------chhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh
Confidence                          01111122399998888888888887776666  8999999999999999988743

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.33  E-value=2.5e-12  Score=116.77  Aligned_cols=95  Identities=25%  Similarity=0.268  Sum_probs=83.8

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VS   82 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~   82 (298)
                      .|+...+..|.|+||-|+-.||.++|++||+.|+++|..|.    +||||||.||..+++.+++.|++.|+-+.... .+
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DS----dGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSD  649 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADS----DGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSD  649 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccC----CCCchhhhhhhcCchHHHHHHHhccceEEeeeccc
Confidence            36677889999999999999999999999999999999998    89999999999999999999999999887654 45


Q ss_pred             CCcHHHHHH--hcCcHHHHHHh
Q 041054           83 GRIPYAVAL--KHKHGACAALL  102 (298)
Q Consensus        83 g~tpL~~A~--~~~~~~~~~~L  102 (298)
                      +.||..-+-  +.|...|.++|
T Consensus       650 meTa~eKCee~eeGY~~CsqyL  671 (752)
T KOG0515|consen  650 METAAEKCEEMEEGYDQCSQYL  671 (752)
T ss_pred             ccchhhhcchhhhhHHHHHHHH
Confidence            788876543  45788888888

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.32  E-value=4.2e-12  Score=124.50  Aligned_cols=86  Identities=30%  Similarity=0.359  Sum_probs=79.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-------CC
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-------GA   74 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-------ga   74 (298)
                      .|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+++       |+
T Consensus       104 ~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~----~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga  179 (664)
T PTZ00322        104 GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK----DGKTPLELAEENGFREVVQLLSRHSQCHFELGA  179 (664)
T ss_pred             CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHCCcHHHHHHHHhCCCcccccCC
Confidence            4789999999999999999999999999999999999999887    899999999999999999999999       89


Q ss_pred             CCcccccCCCcHHHHHH
Q 041054           75 DRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        75 d~~~~d~~g~tpL~~A~   91 (298)
                      +++..+..|.+|+..+.
T Consensus       180 ~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        180 NAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCccccCCCCccchhh
Confidence            99888888887776553

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.24  E-value=2.7e-11  Score=109.34  Aligned_cols=94  Identities=34%  Similarity=0.349  Sum_probs=86.2

Q ss_pred             ccCCCCCCcH------HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            7 NIRDGRGATP------LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         7 n~~d~~G~Tp------Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      -.+|.+|.|.      ||..++.|+.++.-.||..||++|+....   .|.||||+|++.|+.--+++|+-+|||+...|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---kg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---KGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---cCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            4578888776      89999999999999999999999998875   79999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhc
Q 041054           81 VSGRIPYAVALKHKHGACAALLN  103 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll  103 (298)
                      ..|+||+.+|-..||.++++-|+
T Consensus       198 ~~GmtP~~~AR~~gH~~laeRl~  220 (669)
T KOG0818|consen  198 SSGMTPVDYARQGGHHELAERLV  220 (669)
T ss_pred             CCCCcHHHHHHhcCchHHHHHHH
Confidence            99999999999999988776554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.19  E-value=9.5e-12  Score=118.26  Aligned_cols=87  Identities=31%  Similarity=0.417  Sum_probs=82.5

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ...|++|..|+|+||+|+..+...++++||++|++++.+|..   .|+||||-|+..|+++|+-+||.+|+.+..+|+.|
T Consensus        43 n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---SG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeg  119 (1267)
T KOG0783|consen   43 NLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---SGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEG  119 (1267)
T ss_pred             hhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---ccchHhhHhhhhchHHHHHHHHhcCCceEEecccC
Confidence            347899999999999999999999999999999999999985   79999999999999999999999999999999999


Q ss_pred             CcHHHHHHhc
Q 041054           84 RIPYAVALKH   93 (298)
Q Consensus        84 ~tpL~~A~~~   93 (298)
                      .+||.+-++-
T Consensus       120 lsplq~~~r~  129 (1267)
T KOG0783|consen  120 LSPLQFLSRV  129 (1267)
T ss_pred             CCHHHHHhhc
Confidence            9999988773

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.00  E-value=3.7e-10  Score=101.70  Aligned_cols=95  Identities=24%  Similarity=0.256  Sum_probs=87.9

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCcH
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVSGRIP   86 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tp   86 (298)
                      .++.++..++++|++.|++..++.+.-.|.|++..+.    +.+|+||.||..|+.+++++|++. +.+++.+|..|+||
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~Dy----D~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDY----DDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP  576 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhccccccccc----ccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence            4556778899999999999999999999999998887    789999999999999999999987 99999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCC
Q 041054           87 YAVALKHKHGACAALLNPAS  106 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~g  106 (298)
                      |.-|...+|.+++++|-++.
T Consensus       577 lDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             chHhHhcCcHHHHHHHHHHh
Confidence            99999999999999997653

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.1e-09  Score=62.33  Aligned_cols=28  Identities=54%  Similarity=0.818  Sum_probs=15.6

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADRL   77 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~   77 (298)
                      |+||||+|+..|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4555555555555555555555555554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.94  E-value=1.2e-09  Score=62.22  Aligned_cols=30  Identities=53%  Similarity=0.645  Sum_probs=27.6

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccc
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCA   41 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~   41 (298)
                      +|+||||+||..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999873

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.92  E-value=2.9e-09  Score=97.99  Aligned_cols=93  Identities=26%  Similarity=0.289  Sum_probs=81.2

Q ss_pred             HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcH
Q 041054           17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG   96 (298)
Q Consensus        17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~   96 (298)
                      |.-|+...++..+-+||.+|..........+-.|.|+||+|++.|++.+.++|+=+|+|+-.+|.+|+|+|.||-+.|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            56778888899999999998765443332333789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCCCCC
Q 041054           97 ACAALLNPASAEP  109 (298)
Q Consensus        97 ~~~~~Ll~~ga~~  109 (298)
                      +|+.+|+++|..+
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999864

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.91  E-value=2e-09  Score=62.85  Aligned_cols=31  Identities=52%  Similarity=0.721  Sum_probs=19.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      |+||||+|+..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.89  E-value=2.7e-09  Score=62.27  Aligned_cols=33  Identities=42%  Similarity=0.674  Sum_probs=30.8

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCC
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTG   44 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~   44 (298)
                      +|+||||+|+..|+.+++++||++|++++.+++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.82  E-value=1.7e-08  Score=82.01  Aligned_cols=79  Identities=24%  Similarity=0.500  Sum_probs=57.2

Q ss_pred             ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCC-----CCCCCCCCCCCcccccccceeEEEEeecCCC
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPN-----PTTACLTPPVCPFCRSTIAHLVVVKIENQED  241 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~-----~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~  241 (298)
                      +....+...|.||++...+.+..+|||.+|..|+..+....+..     ..........||.||..|+...+..+..+..
T Consensus        12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~   91 (193)
T PLN03208         12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ   91 (193)
T ss_pred             eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence            34445678899999999999999999999999998753322110     0011234579999999999988888777765


Q ss_pred             CCcc
Q 041054          242 ADRD  245 (298)
Q Consensus       242 ~~~~  245 (298)
                      ...+
T Consensus        92 ~~~~   95 (193)
T PLN03208         92 KAPQ   95 (193)
T ss_pred             CCCC
Confidence            4443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=8.9e-09  Score=85.18  Aligned_cols=65  Identities=22%  Similarity=0.418  Sum_probs=54.2

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCCCC
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQEDA  242 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~~  242 (298)
                      ....-.|.||+|...+.++..|||.+|+.|+..+-..        .+....||+|+..|+.-.++.+..+...
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~--------~~~~~~cPVCK~~Vs~~~vvPlYGrG~~  108 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT--------RPNSKECPVCKAEVSIDTVVPLYGRGSK  108 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccceehHHHHHHHhh--------cCCCeeCCccccccccceEEeeeccCCC
Confidence            3456789999999999999999999999999655222        3445778999999999999999998763

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.80  E-value=2.2e-09  Score=68.99  Aligned_cols=47  Identities=36%  Similarity=0.820  Sum_probs=39.8

Q ss_pred             CcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          173 TELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ...|.||++...++.+.||||. +|..|+..+..           ....||+||++|++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-----------~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK-----------RKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-----------TTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-----------cCCCCCcCChhhcC
Confidence            4689999999999999999999 79999999855           23789999999976

...

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.80  E-value=9.6e-09  Score=94.53  Aligned_cols=99  Identities=26%  Similarity=0.263  Sum_probs=87.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC--ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGAL--VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      |-++-.++.+..|.||+|+..|+-++|++||++|..  ++..+.    .|.|+||-|+..++..+.++|++.||.+...|
T Consensus       889 gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de----~get~lhkaa~~~~r~vc~~lvdagasl~ktd  964 (1004)
T KOG0782|consen  889 GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADE----TGETALHKAACQRNRAVCQLLVDAGASLRKTD  964 (1004)
T ss_pred             CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh----hhhHHHHHHHHhcchHHHHHHHhcchhheecc
Confidence            345667888999999999999999999999999853  333444    79999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                      ..|.||-.-|-+.|..+++.+|-..
T Consensus       965 ~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  965 SKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             cCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999999999998543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.74  E-value=1.9e-08  Score=92.09  Aligned_cols=87  Identities=28%  Similarity=0.354  Sum_probs=71.4

Q ss_pred             cHHHHHHHcCChHHHHHHHhC--CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh
Q 041054           15 TPLHLAARQRRPECVHILLDS--GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK   92 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~   92 (298)
                      -|||+++.....+-+..++..  ...++..+.    .|.||||+|+..|+.+.++.|+.+||++..+|+.|++|||-|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~----~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDP----PGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccC----CCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence            359999988887777664443  344555554    79999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHhccC
Q 041054           93 HKHGACAALLNPA  105 (298)
Q Consensus        93 ~~~~~~~~~Ll~~  105 (298)
                      .|+.+++..++.+
T Consensus        98 ~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   98 TGNEQIITEVLRH  110 (560)
T ss_pred             cCCHHHHHHHHHH
Confidence            9998877766554

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.72  E-value=4.2e-09  Score=100.68  Aligned_cols=94  Identities=20%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             HHHHHHhC-CCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhcc
Q 041054           28 CVHILLDS-GAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNP  104 (298)
Q Consensus        28 ~v~~Ll~~-ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~  104 (298)
                      -++-++.. +.+ .|..|.    .|+|+||+|+..+..+++++||++|+|++.+|.. |+||||-|+..|+.+|+-+|+.
T Consensus        32 qlk~F~~k~c~n~anikD~----~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~  107 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDR----YGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLS  107 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHh----hccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHh
Confidence            34444443 322 445555    8999999999999999999999999999999975 9999999999999999999999


Q ss_pred             CCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054          105 ASAEPLVWPSPLKFISELNQEAKALLENALM  135 (298)
Q Consensus       105 ~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~  135 (298)
                      +|+.          ...+|++|..||..-.+
T Consensus       108 ~g~S----------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 KGRS----------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             cCCc----------eEEecccCCCHHHHHhh
Confidence            9987          56688999999976554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.68  E-value=1e-08  Score=92.58  Aligned_cols=101  Identities=20%  Similarity=0.186  Sum_probs=88.0

Q ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC-CCCCCCCCCChhhhhHhhH
Q 041054           46 YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA-SAEPLVWPSPLKFISELNQ  124 (298)
Q Consensus        46 ~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~  124 (298)
                      .+..+.-++++|++.|.+..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++. +.+|          ..+|.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~----------~~kDR  571 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP----------DPKDR  571 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC----------Chhhc
Confidence            344678899999999999999999999999999999999999999999999999999986 4442          66899


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCC
Q 041054          125 EAKALLENALMEANKEREKNILKGTAYSLPSP  156 (298)
Q Consensus       125 ~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p  156 (298)
                      +|+|||..|...++.+++++|.+-.......|
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~~y~~~~  603 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQYPYTLMP  603 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhcccccCc
Confidence            99999999999999999999887655443333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.61  E-value=9.2e-08  Score=76.89  Aligned_cols=76  Identities=29%  Similarity=0.325  Sum_probs=67.4

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      +.+||.+|..||||||.|+..|..+.+.+|+.+| +.|...+.    .|.+++.+|-+.|..++|..|.+.-.+-...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~----ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDE----SSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccccccccc----ccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            4689999999999999999999999999999999 88887777    899999999999999999999998655555444


Q ss_pred             C
Q 041054           82 S   82 (298)
Q Consensus        82 ~   82 (298)
                      .
T Consensus        78 s   78 (223)
T KOG2384|consen   78 S   78 (223)
T ss_pred             C
Confidence            3

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=1.2e-07  Score=87.00  Aligned_cols=65  Identities=40%  Similarity=0.539  Sum_probs=60.4

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW   72 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~   72 (298)
                      ..|+.+|..|.||||+|+..|+.+.++.|+.+||++..+++    .||+|||.|+..|+.+++..++.+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~----~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN----EGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc----ccccHHHHHHHcCCHHHHHHHHHH
Confidence            46889999999999999999999999999999999999888    899999999999999988877754

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.57  E-value=8.4e-08  Score=88.45  Aligned_cols=122  Identities=17%  Similarity=0.154  Sum_probs=102.4

Q ss_pred             HHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC--CcccccCCCcHHHHHHhcC
Q 041054           17 LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD--RLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        17 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad--~~~~d~~g~tpL~~A~~~~   94 (298)
                      |..|+..+++--++.+-.+|.++-.++.    .-.|-||+|+..|+-++|++||++|..  ++..|..|.|+||-|+..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~----~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~  945 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGP----DHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR  945 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCc----chhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence            5566777766656666667777766666    678999999999999999999999864  5667889999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCC
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYS  152 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~  152 (298)
                      +..+.++|++.|+.          +...|..|+||-+.|-..+..+....|....++.
T Consensus       946 ~r~vc~~lvdagas----------l~ktd~kg~tp~eraqqa~d~dlaayle~rq~yk  993 (1004)
T KOG0782|consen  946 NRAVCQLLVDAGAS----------LRKTDSKGKTPQERAQQAGDPDLAAYLESRQNYK  993 (1004)
T ss_pred             chHHHHHHHhcchh----------heecccCCCChHHHHHhcCCchHHHHHhhhhchh
Confidence            99999999999998          5677889999999999999999888887666654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=5.7e-08  Score=88.95  Aligned_cols=87  Identities=30%  Similarity=0.533  Sum_probs=65.6

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce--eEEEEeecCCCCCccccccC
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH--LVVVKIENQEDADRDIGDIS  250 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~--~~~~~~~~~~~~~~~~~~~~  250 (298)
                      ...|.||++.+.......|||.+|..|++.+|....      .-.+..||.|+..|.-  +..+.+......++ .....
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~------~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~-l~~~~  258 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSA------IKGPCSCPICRSTITLKDLLPVFIEDDQKKEE-LKLHQ  258 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhc------ccCCccCCchhhhccccceeeeeeccccccHH-HHHHh
Confidence            678999999999999999999999999999987772      4567899999999998  77777766543333 22233


Q ss_pred             CcccccccccccCCCCC
Q 041054          251 SPKLRKARKSRNFSEGS  267 (298)
Q Consensus       251 ~~~~~~~r~~~~~~~~~  267 (298)
                      .|+. -.++++.|.+..
T Consensus       259 ~~ng-~~~~~r~F~~d~  274 (513)
T KOG2164|consen  259 DPNG-IPDYNRRFSGDP  274 (513)
T ss_pred             cccC-CCccccceecCc
Confidence            3333 456777776544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.51  E-value=1.2e-07  Score=86.06  Aligned_cols=83  Identities=23%  Similarity=0.250  Sum_probs=73.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054           53 PLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLE  131 (298)
Q Consensus        53 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~  131 (298)
                      -||-.++.|+.++.-.||..||++|..+.. |.||||+|++.|+.--+++|+-|||+          +...|.+|.||+.
T Consensus       136 QLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----------~~a~d~~GmtP~~  205 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----------PGAQDSSGMTPVD  205 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----------CCCCCCCCCcHHH
Confidence            489999999999999999999999997754 99999999999999999999999999          4678999999999


Q ss_pred             HHHHhhhHHHHHHH
Q 041054          132 NALMEANKEREKNI  145 (298)
Q Consensus       132 ~A~~~~~~~~~~~l  145 (298)
                      +|-..|+-++.+.|
T Consensus       206 ~AR~~gH~~laeRl  219 (669)
T KOG0818|consen  206 YARQGGHHELAERL  219 (669)
T ss_pred             HHHhcCchHHHHHH
Confidence            99888876654433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.48  E-value=1.2e-07  Score=93.58  Aligned_cols=89  Identities=33%  Similarity=0.429  Sum_probs=77.4

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      ..|.|+||.|+..+..-.+++||++|+++|..+.    .|.||||.+...|+...+..|+++|++.+..+.+|.+||++|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~----~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a  729 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDS----KGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA  729 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhc----cCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence            4678999999999999999999999999988887    799999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhc
Q 041054           91 LKHKHGACAALLN  103 (298)
Q Consensus        91 ~~~~~~~~~~~Ll  103 (298)
                      ....+.+++-+|.
T Consensus       730 ~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  730 MEAANADIVLLLR  742 (785)
T ss_pred             hhhccccHHHHHh
Confidence            8776666655553

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.39  E-value=5.2e-07  Score=83.52  Aligned_cols=65  Identities=37%  Similarity=0.530  Sum_probs=60.3

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR   76 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~   76 (298)
                      ..+.+|+|+||+||+.|++.+.++|+=+|+|+-..+.    .|+|+|.||-..|.-+|+..|+.+|+..
T Consensus       656 ~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda----~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  656 CGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA----HGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             ccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc----CCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            3466789999999999999999999999999999988    8999999999999999999999999753

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2e-07  Score=82.02  Aligned_cols=58  Identities=26%  Similarity=0.645  Sum_probs=49.5

Q ss_pred             CCCcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ  239 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~  239 (298)
                      .....|.||+....+..+.||.|.+ |..|+..|           .-++-.||.||++|.+++-...+..
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-----------r~q~n~CPICRqpi~~ll~i~~~~~  346 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSL-----------RYQTNNCPICRQPIEELLEIYVNKE  346 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHH-----------HHhhcCCCccccchHhhheeccccc
Confidence            3467899999999999999999999 99999888           3345679999999999998875543

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.34  E-value=2.8e-07  Score=81.63  Aligned_cols=99  Identities=29%  Similarity=0.457  Sum_probs=67.1

Q ss_pred             HHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccc-----------cccCCCcccccccccccceEEeCCCchhH
Q 041054          128 ALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNI-----------SEASDTELCCICFEQVCTIEVQDCGHQMC  196 (298)
Q Consensus       128 t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~-----------~~~~~~~~C~IC~~~~~~~~~~~CGH~~C  196 (298)
                      .+|..|+..|.+|-..+.-.|.+.+.....-.+....+.+           +..+.-++|.||.++..++...||||.+|
T Consensus       313 KpL~QaL~eG~keGFYlyPdGr~~npdLt~l~~~~p~d~i~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPCGHLlC  392 (563)
T KOG1785|consen  313 KPLFQALLEGHKEGFYLYPDGRDQNPDLTGLCQPPPQDRIKVTQEQYELYCEMGSTFELCKICAENDKDVKIEPCGHLLC  392 (563)
T ss_pred             cHHHHHHHhccccceEECCCCccCCCChhhccCCCcccceeeeHHHHHHHHHccchHHHHHHhhccCCCcccccccchHH
Confidence            4677888888887666666665554322222221112211           33445589999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          197 AQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       197 ~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ..|+..+ .+++        ....|||||-+|...-.+.
T Consensus       393 t~CLa~W-Q~sd--------~gq~CPFCRcEIKGte~vi  422 (563)
T KOG1785|consen  393 TSCLAAW-QDSD--------EGQTCPFCRCEIKGTEPVI  422 (563)
T ss_pred             HHHHHhh-cccC--------CCCCCCceeeEecccccee
Confidence            9999555 3332        2478999999998665443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=1.5e-07  Score=59.28  Aligned_cols=48  Identities=33%  Similarity=0.781  Sum_probs=41.5

Q ss_pred             cccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          174 ELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ..|.||++.+-+.+..-|||+. |-.|.++++.          .++-.||.||++|...
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~----------~~~g~CPiCRapi~dv   56 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKK----------ALHGCCPICRAPIKDV   56 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHH----------ccCCcCcchhhHHHHH
Confidence            6799999999999999999998 9999999943          3457899999998654

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=3.2e-07  Score=78.32  Aligned_cols=48  Identities=31%  Similarity=0.841  Sum_probs=40.6

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      .-.|.+|++...+....||||.||..|++.+|...           ..||.||....--
T Consensus       239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek-----------~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK-----------AECPLCREKFQPS  286 (293)
T ss_pred             CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc-----------cCCCcccccCCCc
Confidence            46899999999999999999999999998885443           4699999776543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.29  E-value=2.2e-07  Score=91.55  Aligned_cols=132  Identities=17%  Similarity=0.069  Sum_probs=98.7

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVS   82 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~   82 (298)
                      .+......|+|-||+++..++.-+++.+++- |......+.    .|.--+|+ |..++.+++-+|+.+ |..++.+|..
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~----d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~  640 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR----DGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRN  640 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcc----cCCChhhH-hhhcCCceeEEEEeecccccccccCC
Confidence            4455667899999999999999999999986 544444444    67777888 555667776666655 8899999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      |+||||||..+|+..++..|++.|+++.+...|.    ...+.|.|+-..|..++...+.-.|
T Consensus       641 G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps----~~~p~g~ta~~la~s~g~~gia~~l  699 (975)
T KOG0520|consen  641 GWTPLHWAAFRGREKLVASLIELGADPGAVTDPS----PETPGGKTAADLARANGHKGIAGYL  699 (975)
T ss_pred             CCcccchHhhcCHHHHHHHHHHhccccccccCCC----CCCCCCCchhhhhhcccccchHHHH
Confidence            9999999999999999999999999887654442    2234456666666655555544433

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.26  E-value=2.7e-06  Score=75.24  Aligned_cols=70  Identities=29%  Similarity=0.234  Sum_probs=61.7

Q ss_pred             CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054           14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY   87 (298)
Q Consensus        14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL   87 (298)
                      .--|..||+.|+.+.|+.|++.|.++|..+.    ...+||.+|...||.++|++|+++||-...-.-+|...+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~----fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDR----FDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhc----ccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            3458899999999999999999999999998    789999999999999999999999997766555666543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.25  E-value=1.7e-06  Score=69.74  Aligned_cols=66  Identities=27%  Similarity=0.079  Sum_probs=61.0

Q ss_pred             CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054           36 GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG-ADRLHRDVSGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        36 ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                      +.++|..|.    .||||||.|+..|+.+.|.+|+.+| +++...|..+.+++.+|-+.|+.+++..|.++
T Consensus         2 e~~in~rD~----fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDA----FGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhh----hcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            356777777    8999999999999999999999999 99999999999999999999999999999766

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.19  E-value=8.9e-07  Score=87.47  Aligned_cols=86  Identities=30%  Similarity=0.348  Sum_probs=77.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHH
Q 041054           49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKA  128 (298)
Q Consensus        49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t  128 (298)
                      .|.|+||.|+..+..-++++|++.|+++|..|..|+||||.+...|+...+.+|+++|+++          +..+.++++
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~----------~a~~~~~~~  724 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP----------NAFDPDGKL  724 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc----------cccCccCcc
Confidence            5899999999999999999999999999999999999999999999999999999999995          567889999


Q ss_pred             HHHHHHHhhhHHHHHH
Q 041054          129 LLENALMEANKEREKN  144 (298)
Q Consensus       129 ~L~~A~~~~~~~~~~~  144 (298)
                      +|++|....+.+++-+
T Consensus       725 ~l~~a~~~~~~d~~~l  740 (785)
T KOG0521|consen  725 PLDIAMEAANADIVLL  740 (785)
T ss_pred             hhhHHhhhccccHHHH
Confidence            9999977755444433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.18  E-value=2.4e-06  Score=82.79  Aligned_cols=96  Identities=24%  Similarity=0.177  Sum_probs=80.7

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc------
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL------   77 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~------   77 (298)
                      -++|.+|.-|+++|+.|+.+.+.+++++|+++...+    +       -+|.+|+..|..++|++|+.+-....      
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~----g-------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~  121 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE----G-------DALLLAIAVGSVPLVELLLVHFVDAPYLERSG  121 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc----c-------hHHHHHHHHHHHHHHHHHHhcccccchhcccc
Confidence            368999999999999999999999999999987543    1       38999999999999999998743321      


Q ss_pred             ----ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCC
Q 041054           78 ----HRDVSGRIPYAVALKHKHGACAALLNPASAEPL  110 (298)
Q Consensus        78 ----~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~  110 (298)
                          ..-..+.|||.+|+..++.+|+++|+..|+...
T Consensus       122 d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  122 DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence                122347899999999999999999999998743

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.07  E-value=3.8e-06  Score=71.40  Aligned_cols=53  Identities=26%  Similarity=0.648  Sum_probs=39.6

Q ss_pred             CCCcccccccccccc--------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          171 SDTELCCICFEQVCT--------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~--------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      +....|.||++....        ....+|||.||..|+..+-.           ....||+||..+......
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~-----------~~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK-----------EKNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHh-----------cCCCCCCCCCEeeEEeee
Confidence            346789999997543        24568999999999977622           236899999988865543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1.8e-06  Score=68.54  Aligned_cols=49  Identities=35%  Similarity=0.741  Sum_probs=38.8

Q ss_pred             CCcccccccccccceE--EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          172 DTELCCICFEQVCTIE--VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~--~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ....|.|||+.....+  ...|||.||.+|+..+-...           ..||.||..|+.-
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-----------~~CP~C~kkIt~k  180 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-----------NKCPTCRKKITHK  180 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-----------CCCCCcccccchh
Confidence            3478999999877654  47899999999998873333           6899999888753

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.06  E-value=3.5e-06  Score=51.74  Aligned_cols=42  Identities=29%  Similarity=0.638  Sum_probs=30.8

Q ss_pred             cccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          176 CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       176 C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      |.||++-..+.+..+|||.||..|+..++.....       ....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~-------~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG-------SGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS-------ST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCC-------cCCCCcCC
Confidence            7899999999999999999999999999665532       11678887

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.02  E-value=1.2e-05  Score=78.06  Aligned_cols=128  Identities=17%  Similarity=0.047  Sum_probs=96.0

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCC----CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGA----LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY   87 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga----~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL   87 (298)
                      .+.--...|+..|+.-.|+..++...    ++|..+.    -|+++|++|+.+.+.+++++|+++....  .|     +|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~----lGr~al~iai~nenle~~eLLl~~~~~~--gd-----AL   92 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDP----LGRLALHIAIDNENLELQELLLDTSSEE--GD-----AL   92 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccCh----HhhhceecccccccHHHHHHHhcCcccc--ch-----HH
Confidence            34445678999999999999988643    3444554    8999999999999999999999997665  33     89


Q ss_pred             HHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           88 AVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        88 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      -+|+..+...++++++.+.....-.......-...-..+.|||..|+..++.|+++.|++.+.
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999999988543211111111111223456799999999999999998876543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=1.2e-06  Score=74.60  Aligned_cols=46  Identities=33%  Similarity=0.858  Sum_probs=41.8

Q ss_pred             CcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          173 TELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      ..+|.||++.+.+-.+.+|||++ |.+|...+               .-||+||+.|.+.+-
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm---------------~eCPICRqyi~rvvr  346 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM---------------NECPICRQYIVRVVR  346 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc---------------ccCchHHHHHHHHHh
Confidence            67999999999999999999999 99999887               689999999987543

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=3.5e-06  Score=71.14  Aligned_cols=48  Identities=29%  Similarity=0.726  Sum_probs=40.1

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .-.|.||++..-.....+|||.||..|++..|...+.         ..||.||+.+.
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~---------~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY---------EFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeecccCCcccccccchhhHHHHHHHHHhhcc---------ccCchhhhhcc
Confidence            3569999999999999999999999999986555442         66999997643

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.96  E-value=6.1e-06  Score=49.89  Aligned_cols=38  Identities=34%  Similarity=0.947  Sum_probs=30.4

Q ss_pred             cccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          176 CCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       176 C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      |.||++...+. .+.+|||.+|.+|+..+-.. .          ..||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~----------~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-N----------PKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-T----------SB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-c----------CCCcCC
Confidence            78999998887 78999999999999888444 2          689987

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.93  E-value=1.6e-05  Score=70.57  Aligned_cols=58  Identities=26%  Similarity=0.201  Sum_probs=55.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           51 STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        51 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      .--|..|++.|..+.|+.|++.|.++|.+|....+||.+|..-||.+++++|+++||-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4468899999999999999999999999999999999999999999999999999984

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.87  E-value=8.7e-05  Score=68.09  Aligned_cols=69  Identities=26%  Similarity=0.382  Sum_probs=57.9

Q ss_pred             ChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhc
Q 041054           25 RPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH   93 (298)
Q Consensus        25 ~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~   93 (298)
                      -...|++|.+++++.|..-.  ..+..-.|+||+|+..|..++|.+||+.|+|+..+|..|+||+.++...
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            36788899999888765432  2334578999999999999999999999999999999999999998733

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.85  E-value=1.2e-05  Score=49.05  Aligned_cols=40  Identities=30%  Similarity=0.766  Sum_probs=33.3

Q ss_pred             cccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          176 CCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       176 C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      |.||++...... ..+|||.+|..|+..+.....         ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~---------~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG---------SVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS---------SSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC---------CccCCcC
Confidence            789999988887 999999999999999977422         2679887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.85  E-value=9.3e-06  Score=50.47  Aligned_cols=40  Identities=33%  Similarity=0.725  Sum_probs=31.8

Q ss_pred             ccccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          175 LCCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       175 ~C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      .|.||++..   ..+...+|||.||..|+..+-...           ..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-----------~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-----------NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-----------SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-----------CcCCccC
Confidence            589999876   357888899999999998885443           4899997

...

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.85  E-value=2.3e-05  Score=48.69  Aligned_cols=40  Identities=38%  Similarity=0.904  Sum_probs=31.7

Q ss_pred             cccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054          176 CCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS  226 (298)
Q Consensus       176 C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~  226 (298)
                      |.+|++..   ....+.+|||.+|..|+..+-           .....||+|++
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-----------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-----------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc-----------CCCCCCcCCCC
Confidence            67777776   347888999999999998882           33478999984

>PHA02926 zinc finger-like protein; Provisional

Probab=97.84  E-value=6.3e-06  Score=68.01  Aligned_cols=62  Identities=23%  Similarity=0.570  Sum_probs=44.1

Q ss_pred             ccccCCCcccccccccccc---------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          167 ISEASDTELCCICFEQVCT---------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~---------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      +...+.+..|.||++..-.         ....+|+|.||..|+..+.....     .+.....||.||........
T Consensus       164 ~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~-----~~~~~rsCPiCR~~f~~I~p  234 (242)
T PHA02926        164 VYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR-----ETGASDNCPICRTRFRNITM  234 (242)
T ss_pred             HHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc-----ccCcCCcCCCCcceeeeecc
Confidence            3455667899999987422         35668999999999987744321     23445789999987765443

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=97.76  E-value=3.2e-05  Score=47.68  Aligned_cols=44  Identities=32%  Similarity=0.782  Sum_probs=33.0

Q ss_pred             ccccccccc-cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          175 LCCICFEQV-CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       175 ~C~IC~~~~-~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      .|.||++.. ......+|||.+|..|+..+...          ....||.|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh----------CcCCCCCCCCcC
Confidence            388999887 44455569999999999877443          236799999764

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=8.4e-06  Score=71.95  Aligned_cols=49  Identities=33%  Similarity=0.845  Sum_probs=42.4

Q ss_pred             ccCCCcccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      +.+-...|.||.++.-...+.||||+. |..|...+               +.||+||+.|...+
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l---------------~~CPvCR~rI~~~~  350 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHL---------------PQCPVCRQRIRLVR  350 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEEchHHHhhC---------------CCCchhHHHHHHHH
Confidence            445568999999999999999999999 88888777               77999999987654

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.60  E-value=5.3e-05  Score=69.17  Aligned_cols=52  Identities=23%  Similarity=0.564  Sum_probs=41.9

Q ss_pred             cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ........|.||++.....+..+|||.||..|+..+...           ...||.|+..+..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-----------~~~CP~Cr~~~~~   72 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-----------QPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-----------CCCCCCCCCcccc
Confidence            344456799999999888889999999999999876322           2479999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00184 RING Ring finger

Probab=97.53  E-value=0.00014  Score=43.10  Aligned_cols=39  Identities=33%  Similarity=0.815  Sum_probs=31.0

Q ss_pred             cccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          176 CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       176 C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      |.||++........+|||.+|..|+..+...          ....||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~----------~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS----------GNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHh----------CcCCCCCC
Confidence            6789998888899999999999999776441          22568876

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.53  E-value=5.4e-05  Score=75.11  Aligned_cols=97  Identities=23%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHH-hCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc----
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILL-DSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH----   78 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~----   78 (298)
                      ......|.+|...+|+ |..++.++.-+|+ -.|..+++++.    .|+||||||+..|+..++..|++.|++...    
T Consensus       599 ~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~----~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdp  673 (975)
T KOG0520|consen  599 SGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDR----NGWTPLHWAAFRGREKLVASLIELGADPGAVTDP  673 (975)
T ss_pred             cCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccC----CCCcccchHhhcCHHHHHHHHHHhccccccccCC
Confidence            3445667788888888 4556666665554 45888888888    899999999999999999999998886543    


Q ss_pred             --cccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054           79 --RDVSGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        79 --~d~~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                        .+-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       674 s~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  674 SPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCCCCCCCchhhhhhcccccchHHHHhhh
Confidence              334589999999999998888777554

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=8.2e-05  Score=65.30  Aligned_cols=56  Identities=25%  Similarity=0.607  Sum_probs=46.5

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ..++...|.||...+.+.++.||+|+-|..|+...-.+.           +.|-+|++.|....+..
T Consensus       418 p~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~-----------k~CFfCktTv~~~~ld~  473 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC-----------KRCFFCKTTVIDVILDK  473 (489)
T ss_pred             CCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC-----------CeeeEecceeeehhccc
Confidence            335678999999999999999999999999998874444           78999999988654443

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.44  E-value=8.7e-05  Score=63.47  Aligned_cols=46  Identities=30%  Similarity=0.644  Sum_probs=39.9

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ...|.||-+........+|||.||.-|+...           --.++.||.||.+--
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~h-----------L~~qp~CP~Cr~~~~   70 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRH-----------LGTQPFCPVCREDPC   70 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHH-----------hcCCCCCccccccHH
Confidence            4689999999999999999999999999877           445689999997654

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.36  E-value=0.00021  Score=62.61  Aligned_cols=55  Identities=27%  Similarity=0.607  Sum_probs=47.7

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      +.+.|.||.....-....||+|++|..|.+++.+-.+.         .-|++||+.-...+...
T Consensus        60 en~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~---------K~C~~CrTE~e~V~fT~  114 (493)
T COG5236          60 ENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQ---------KGCPLCRTETEAVVFTA  114 (493)
T ss_pred             ccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhc---------cCCCccccccceEEEec
Confidence            56899999999999999999999999999998776653         78999998887776654

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.35  E-value=0.00017  Score=63.26  Aligned_cols=50  Identities=24%  Similarity=0.546  Sum_probs=36.0

Q ss_pred             Cccccccccc---ccc--eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          173 TELCCICFEQ---VCT--IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       173 ~~~C~IC~~~---~~~--~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ...|.+|...   ...  ..+.+|||.+|..|+..++....          ..||.|+..+..--
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~----------~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS----------GSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC----------CCCCCCCCccchhh
Confidence            4689999984   222  12237999999999999864432          58999998777543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00248 ANK ankyrin repeats

Probab=97.34  E-value=0.00039  Score=37.53  Aligned_cols=27  Identities=52%  Similarity=0.834  Sum_probs=13.1

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADR   76 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~   76 (298)
                      |.||||+|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            344555555555555555555444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.31  E-value=0.00046  Score=37.20  Aligned_cols=29  Identities=52%  Similarity=0.715  Sum_probs=23.9

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCcc
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVC   40 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~   40 (298)
                      .|.||||+|+..++.++++.|++.+.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47888999988899999999888877654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.31  E-value=9.2e-05  Score=64.65  Aligned_cols=52  Identities=29%  Similarity=0.611  Sum_probs=43.8

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      ...-|.||++-+......||||.||.-|+..+           ---++.||.|+.++.+..+.
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~-----------L~~~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKF-----------LSYKPQCPTCCVTVTESDLR   73 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHH-----------hccCCCCCceecccchhhhh
Confidence            35689999999999999999999999999887           33458899999888766554

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.21  E-value=0.00018  Score=44.21  Aligned_cols=31  Identities=39%  Similarity=0.759  Sum_probs=20.0

Q ss_pred             cccccccccc----eEEeCCCchhHHHHHHHHhhcC
Q 041054          176 CCICFEQVCT----IEVQDCGHQMCAQCTLALCCHN  207 (298)
Q Consensus       176 C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~  207 (298)
                      |.||.+ ..+    ....+|||.+|..|+..+....
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            678888 555    6778899999999999997755

>smart00504 Ubox Modified RING finger domain

Probab=97.16  E-value=0.00047  Score=46.17  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=39.3

Q ss_pred             cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..|.||.+...+.+..+|||.+|..|+..+...           ...||+|+..++.
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-----------~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-----------HGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-----------CCCCCCCcCCCCh
Confidence            469999999999999999999999999888544           2679999988754

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.07  E-value=0.00048  Score=47.74  Aligned_cols=42  Identities=33%  Similarity=0.792  Sum_probs=30.8

Q ss_pred             Ccccccccccc-------------cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          173 TELCCICFEQV-------------CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       173 ~~~C~IC~~~~-------------~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      .+.|.||++..             +.+...+|||.|...|+..+-           .....||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWL-----------KQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHH-----------TTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHH-----------hcCCcCCCCC
Confidence            34599998876             556777899999999997773           2235899997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.92  E-value=0.0003  Score=45.00  Aligned_cols=46  Identities=26%  Similarity=0.548  Sum_probs=37.2

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+..|..|......-.+.||||.+|..|--             ......||+|.+.|..
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~-------------~~rYngCPfC~~~~~~   51 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFP-------------GERYNGCPFCGTPFEF   51 (55)
T ss_pred             cceeEEEccccccccccccccceeeccccC-------------hhhccCCCCCCCcccC
Confidence            356788999998889999999999999972             2345789999988753

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.001  Score=59.01  Aligned_cols=45  Identities=31%  Similarity=0.723  Sum_probs=39.1

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS  226 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~  226 (298)
                      .++..|.||++........+|||.+|..|+..++.           ....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-----------~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-----------GPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcCccccccchHhHHHHHHhcC-----------CCcCCcccCC
Confidence            35789999999998889999999999999988855           2389999994

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.0015  Score=56.57  Aligned_cols=57  Identities=21%  Similarity=0.417  Sum_probs=45.3

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecC
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQ  239 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~  239 (298)
                      ...|.||....-..+..+|+|.||--|+...-...+          ..|++||.+|.+....+-...
T Consensus         7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk----------~~CavCR~pids~i~~~psl~   63 (324)
T KOG0824|consen    7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK----------KTCAVCRFPIDSTIDFEPSLK   63 (324)
T ss_pred             CCcceeeeccCCcCccccccchhhhhhhcchhhcCC----------CCCceecCCCCcchhcchhhh
Confidence            467999999988889999999999999966633333          459999999998877654443

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0021  Score=55.63  Aligned_cols=51  Identities=27%  Similarity=0.600  Sum_probs=38.6

Q ss_pred             cccCCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          168 SEASDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       168 ~~~~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      .+....-.|.||++..-.   ..+.||.|.|-..|+..+--.-+          -+||+||++|
T Consensus       318 ~ea~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~----------~~CPvCrt~i  371 (374)
T COG5540         318 VEADKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS----------NKCPVCRTAI  371 (374)
T ss_pred             HhcCCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc----------ccCCccCCCC
Confidence            344555789999998643   68899999998889866633233          6899999876

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.27  E-value=0.0013  Score=55.04  Aligned_cols=46  Identities=35%  Similarity=0.707  Sum_probs=38.9

Q ss_pred             cccccccccccceEEeCCCchh-HHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          174 ELCCICFEQVCTIEVQDCGHQM-CAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~-C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      ..|..|.+....+...||.|.. |..|...+               ..||+|+..+...+.+
T Consensus       159 ~~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~---------------~~CPiC~~~~~s~~~v  205 (207)
T KOG1100|consen  159 RSCRKCGEREATVLLLPCRHLCLCGICDESL---------------RICPICRSPKTSSVEV  205 (207)
T ss_pred             ccceecCcCCceEEeecccceEecccccccC---------------ccCCCCcChhhceeec
Confidence            3499999999999999999999 99998434               6699999888776544

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.26  E-value=0.0059  Score=56.44  Aligned_cols=56  Identities=34%  Similarity=0.449  Sum_probs=46.9

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA   71 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~   71 (298)
                      .|..--|+||+|+.+|..++|.+||+.|+|+...+.    .|.||..+++   +.++-..++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~----~Grtpy~ls~---nkdVk~~F~a  481 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG----AGRTPYSLSA---NKDVKSIFIA  481 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhccc----CCCCcccccc---cHHHHHHHHH
Confidence            344567999999999999999999999999999998    8999999987   4555554543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.002  Score=62.43  Aligned_cols=54  Identities=20%  Similarity=0.559  Sum_probs=44.2

Q ss_pred             cccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          166 NISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       166 ~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .+....+...|.+|..+.-+.+...|||.||..|....-.          .+..+||.|-....
T Consensus       636 Elk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e----------tRqRKCP~Cn~aFg  689 (698)
T KOG0978|consen  636 ELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE----------TRQRKCPKCNAAFG  689 (698)
T ss_pred             HHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH----------HhcCCCCCCCCCCC
Confidence            3566777899999999999999999999999999965522          34589999997654

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.06  E-value=0.0039  Score=55.44  Aligned_cols=48  Identities=23%  Similarity=0.651  Sum_probs=37.1

Q ss_pred             CCCcccccccccccc-------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          171 SDTELCCICFEQVCT-------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~-------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .+...|.||+|..-.             +...||||.+--+|+..++-..           ..||.||.+++
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-----------QTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-----------QTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-----------cCCCcccCccc
Confidence            345789999998322             3567899999999998874444           78999999965

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.0039  Score=55.98  Aligned_cols=60  Identities=25%  Similarity=0.566  Sum_probs=45.0

Q ss_pred             CCCcccccccccccceE-----E---eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          171 SDTELCCICFEQVCTIE-----V---QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~-----~---~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      +....|.||++......     +   .+|-|.+|..|+..+-+...    ..+.....||+||..+......
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q----~~~~~sksCP~CRv~s~~v~pS  226 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQ----FESKTSKSCPFCRVPSSFVNPS  226 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhc----cccccccCCCcccCcccccccc
Confidence            45689999999977766     5   77999999999977622111    1466779999999887765444

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.67  E-value=0.0054  Score=49.82  Aligned_cols=46  Identities=26%  Similarity=0.613  Sum_probs=38.0

Q ss_pred             cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      -.|.||...-...++..|||.||..|.+.-....           ..|-+|+...-.
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-----------~~C~~Cgk~t~G  242 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-----------DECGVCGKATYG  242 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhccC-----------Ccceecchhhcc
Confidence            5899999999999999999999999998773333           679999865443

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.0061  Score=55.89  Aligned_cols=51  Identities=27%  Similarity=0.716  Sum_probs=41.8

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      .+-.|.||+......+..||||.+|..|+.+. .+          ....||.||.++.++..
T Consensus        83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~-ld----------~~~~cp~Cr~~l~e~~~  133 (398)
T KOG4159|consen   83 SEFECCVCSRALYPPVVTPCGHSFCLECLDRS-LD----------QETECPLCRDELVELPA  133 (398)
T ss_pred             chhhhhhhHhhcCCCccccccccccHHHHHHH-hc----------cCCCCcccccccccchH
Confidence            45789999999999999999999999998774 22          33789999999886433

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.54  E-value=0.0059  Score=54.67  Aligned_cols=47  Identities=26%  Similarity=0.653  Sum_probs=34.3

Q ss_pred             ccccccccccc---ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          174 ELCCICFEQVC---TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       174 ~~C~IC~~~~~---~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..|+||+|.-.   .+...||.|.+-..|.-     .|.     +.....||+|++.|-.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CID-----pWL-----~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCID-----PWL-----TQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccch-----hhH-----hhcCccCCCCCCcCCC
Confidence            59999999744   47889999999777773     232     2233679999985544

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.0072  Score=58.41  Aligned_cols=51  Identities=29%  Similarity=0.696  Sum_probs=41.1

Q ss_pred             CCcccccccccccc-----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          172 DTELCCICFEQVCT-----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       172 ~~~~C~IC~~~~~~-----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      ..+.|.||.+....     ....+|||.++..|+..+..-.           ..||+||..+..-..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-----------qtCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-----------QTCPTCRTVLYDYVL  345 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-----------CcCCcchhhhhcccc
Confidence            46899999999888     7899999999999998884443           689999984443333

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.00  E-value=0.0077  Score=52.06  Aligned_cols=48  Identities=25%  Similarity=0.501  Sum_probs=39.2

Q ss_pred             cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ..|.||....-..++..|||.||..|.+.-           -.....|++|.+++-...
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~-----------~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKP-----------YQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhccc-----------cccCCcceeccccccccc
Confidence            569999999999999999999999999666           222368999997765443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=94.96  E-value=0.023  Score=39.30  Aligned_cols=53  Identities=21%  Similarity=0.199  Sum_probs=39.1

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      ++..|.|+.+-..+.+..++||.++..|+...-...          +..||+|+..+....+.
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~----------~~~~P~t~~~l~~~~l~   55 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN----------GGTDPFTRQPLSESDLI   55 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT----------SSB-TTT-SB-SGGGSE
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC----------CCCCCCCCCcCCcccce
Confidence            567899999999999999999999999998874442          47899999888864433

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.87  E-value=0.0063  Score=53.89  Aligned_cols=54  Identities=20%  Similarity=0.543  Sum_probs=40.1

Q ss_pred             cccCCCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          168 SEASDTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       168 ~~~~~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ........|.||++-... +....|+|.||.+|+...-...+          .-||.||+..+.-
T Consensus        38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn----------~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN----------NECPTCRKKLVSK   92 (381)
T ss_pred             HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC----------CCCchHHhhcccc
Confidence            444456789999997554 55666999999999976644444          6899999877643

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=94.79  E-value=0.029  Score=42.78  Aligned_cols=49  Identities=29%  Similarity=0.648  Sum_probs=40.4

Q ss_pred             CcccccccccccceEEeC----CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCTIEVQD----CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~----CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .-.|.||.+...+..+..    ||-..|-.|-..||.+..        +++.||.|++...
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~--------~ypvCPvCkTSFK  132 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN--------LYPVCPVCKTSFK  132 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc--------cCCCCCccccccc
Confidence            467999999887765544    999999999999998886        6899999996543

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=94.51  E-value=0.071  Score=37.69  Aligned_cols=37  Identities=22%  Similarity=0.568  Sum_probs=26.5

Q ss_pred             ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .++.-.|+|.|-..|++..-....        ....||.||++..
T Consensus        46 plv~g~C~H~FH~hCI~kWl~~~~--------~~~~CPmCR~~w~   82 (85)
T PF12861_consen   46 PLVWGKCSHNFHMHCILKWLSTQS--------SKGQCPMCRQPWK   82 (85)
T ss_pred             ceeeccCccHHHHHHHHHHHcccc--------CCCCCCCcCCeee
Confidence            345556999999999988733321        1369999998653

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=94.32  E-value=0.0098  Score=39.46  Aligned_cols=43  Identities=26%  Similarity=0.685  Sum_probs=20.6

Q ss_pred             CcccccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          173 TELCCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      ...|.+|.+-...++ ...|.|.||..|+-..             ....||+|+.+-
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~-------------~~~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDC-------------IGSECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGG-------------TTTB-SSS--B-
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHh-------------cCCCCCCcCChH
Confidence            356889998877764 6889999999999332             113599999654

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.30  E-value=0.22  Score=41.90  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=65.5

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHH--cCCHHHHHHHHHcC-CCCcc---cccCCCcH
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR--GGSIDCIRELLAWG-ADRLH---RDVSGRIP   86 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~--~g~~~~v~~Ll~~g-ad~~~---~d~~g~tp   86 (298)
                      -.++|-+|..++..+++.+||.+= ....++-..=..+.--+-|+..  ..+..+++++|++| +++|.   +-+.|.|-
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtM  257 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTM  257 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchH
Confidence            457888888888999999998751 1111110000012333444433  45677889999987 45654   45679999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCC
Q 041054           87 YAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      |.-|++.++.+++.+|+++||-
T Consensus       258 LDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  258 LDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhHHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999999994

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=93.87  E-value=0.11  Score=48.54  Aligned_cols=62  Identities=16%  Similarity=0.348  Sum_probs=44.7

Q ss_pred             cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      .+..++..|.+|.+..-+.....|-|.||.-|+...--.-      .-.....||.|+.+++-.+..+
T Consensus       531 ~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f------~~~~nvtCP~C~i~LsiDlse~  592 (791)
T KOG1002|consen  531 DENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESF------MENNNVTCPVCHIGLSIDLSEP  592 (791)
T ss_pred             ccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhh------hcccCCCCccccccccccccch
Confidence            3455678999999999999999999999999994331110      0112278999998877554443

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=93.02  E-value=0.18  Score=39.83  Aligned_cols=64  Identities=22%  Similarity=0.442  Sum_probs=41.1

Q ss_pred             CcccccccccccceEEeCCC-------chhH------HHHHHHHhhcCC-CCCCC-------------------CCCCCC
Q 041054          173 TELCCICFEQVCTIEVQDCG-------HQMC------AQCTLALCCHNK-PNPTT-------------------ACLTPP  219 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CG-------H~~C------~~C~~~l~~~~~-~~~~~-------------------~~~~~~  219 (298)
                      ...|.|||+.+-..+..-|.       -.+|      ..|+-.+..... ..+..                   ......
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            35799999998887766632       2222      567766543321 11111                   133578


Q ss_pred             CCcccccccceeEEEEe
Q 041054          220 VCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       220 ~Cp~cr~~I~~~~~~~~  236 (298)
                      +||+||.+|..+.++..
T Consensus        82 ~CPLCRG~V~GWtvve~   98 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVVEP   98 (162)
T ss_pred             cCccccCceeceEEchH
Confidence            99999999999999864

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.55  E-value=0.087  Score=44.57  Aligned_cols=42  Identities=33%  Similarity=0.828  Sum_probs=28.2

Q ss_pred             cccccccc--ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          175 LCCICFEQ--VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       175 ~C~IC~~~--~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .|..|.-.  .-..-...|+|.+|..|.-.-             ....||.|+..|.
T Consensus         5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~-------------~~~~C~lCkk~ir   48 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS-------------SPDVCPLCKKSIR   48 (233)
T ss_pred             EeccccccCCCCceeeeechhhhhhhhcccC-------------Cccccccccceee
Confidence            35555544  334566779999999999222             1228999998844

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=92.24  E-value=0.063  Score=49.69  Aligned_cols=49  Identities=31%  Similarity=0.729  Sum_probs=39.9

Q ss_pred             CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      +...|.+|..-..+.... .|||.+|..|+...           ...+..||.|+..+..-
T Consensus        20 ~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~-----------~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   20 ENLLCPICMSVLRDPVQTTTCGHRFCAGCLLES-----------LSNHQKCPVCRQELTQA   69 (391)
T ss_pred             ccccCccccccccCCCCCCCCCCcccccccchh-----------hccCcCCcccccccchh
Confidence            457899999999998884 99999999999666           33478999998766543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=92.19  E-value=0.052  Score=52.98  Aligned_cols=54  Identities=17%  Similarity=0.406  Sum_probs=39.5

Q ss_pred             Ccccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEee
Q 041054          173 TELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE  237 (298)
Q Consensus       173 ~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~  237 (298)
                      ...|.+|+....+   ....+|+|.||..|+..++...           ..||.||....+..+..-.
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-----------qTCPiDR~EF~~v~V~eS~  179 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-----------QTCPVDRGEFGEVKVLEST  179 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-----------ccCchhhhhhheeeeeccc
Confidence            4567777665443   4556699999999998884444           6899999988887776433

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.73  E-value=0.39  Score=40.43  Aligned_cols=53  Identities=21%  Similarity=0.192  Sum_probs=42.5

Q ss_pred             cCChHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 041054           23 QRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR   76 (298)
Q Consensus        23 ~g~~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~   76 (298)
                      ..+..+++++|.+| +++|..-...+ .|.|-|--|...++.+++.+||++||-.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~N-SGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVN-SGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccC-CcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            34678888889887 56775443322 7999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.06  E-value=0.18  Score=43.39  Aligned_cols=54  Identities=22%  Similarity=0.543  Sum_probs=39.5

Q ss_pred             cCCCcccccccccccceE-EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          170 ASDTELCCICFEQVCTIE-VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~-~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      .+....|.+|-+.+..+- ..+|||..|--|+..-+...         ....||.|......+.
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~---------asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWD---------ASFTCPLCGENVEPLQ  290 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcch---------hhcccCccCCCCcchh
Confidence            345678999999888764 45599999999996653322         2367999998776554

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=90.66  E-value=0.14  Score=45.33  Aligned_cols=46  Identities=33%  Similarity=0.727  Sum_probs=36.1

Q ss_pred             CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      +...|.||++.... +-+-+-||..|..|...+              ...||+||.+|..+
T Consensus        47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~--------------~~~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV--------------SNKCPTCRLPIGNI   93 (299)
T ss_pred             hhccCchhhccCcccceecCCCcEehhhhhhhh--------------cccCCccccccccH
Confidence            45789999998655 455567999999999444              58899999988743

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=90.54  E-value=0.14  Score=50.59  Aligned_cols=52  Identities=23%  Similarity=0.712  Sum_probs=41.1

Q ss_pred             cccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          174 ELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ..|.+|++ .......+|||.+|.+|+...--....         ..||.||..|.+..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~---------~~~~~cr~~l~~~~l~s  506 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSEN---------APCPLCRNVLKEKKLLS  506 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccC---------CCCcHHHHHHHHHHHhh
Confidence            78999999 777889999999999999776333321         28999999988765554

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=90.51  E-value=0.033  Score=38.14  Aligned_cols=56  Identities=20%  Similarity=0.430  Sum_probs=22.6

Q ss_pred             ccccccccccc------ceEEe--CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          174 ELCCICFEQVC------TIEVQ--DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       174 ~~C~IC~~~~~------~~~~~--~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ..|.||+...-      .+...  .|+..+=..||..+-...........+....||+|+.+|+
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            46888987643      12222  3776666667655544332222223566778999999885

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.66  E-value=0.17  Score=43.40  Aligned_cols=49  Identities=22%  Similarity=0.660  Sum_probs=38.4

Q ss_pred             CCcccccccccccceE----------EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIE----------VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~----------~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.+|-.+.-..+          ...|+|.+-..|+...|--++.         +.||+|+..|.
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKk---------qtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKK---------QTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCC---------CCCchHHHHhh
Confidence            3578999988754433          3449999999999999888875         89999997664

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.08  E-value=0.18  Score=50.41  Aligned_cols=52  Identities=25%  Similarity=0.623  Sum_probs=38.9

Q ss_pred             ccCCCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          169 EASDTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ..++.+.|.||..-..       ...+.-|.|.+-..|+..+.+.+..         -.||.||..|+
T Consensus      1465 ~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~---------s~CPlCRseit 1523 (1525)
T COG5219        1465 KFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSAR---------SNCPLCRSEIT 1523 (1525)
T ss_pred             hcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCC---------CCCCccccccc
Confidence            3456789999976433       3344459999999999888666653         68999998875

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.97  E-value=0.58  Score=32.45  Aligned_cols=47  Identities=21%  Similarity=0.145  Sum_probs=26.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054           52 TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        52 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                      .-|..|+..|+.|+++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            3456666666666666666543 111      2246666666666666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=88.84  E-value=0.31  Score=42.36  Aligned_cols=43  Identities=23%  Similarity=0.532  Sum_probs=30.9

Q ss_pred             cccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccc
Q 041054          174 ELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRS  226 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~  226 (298)
                      ..|..|..-.....-. -|||.+|.+|+-..--.++          ..||.|++
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsD----------f~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSD----------FKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhcc----------ccCCCccc
Confidence            5777766554444444 5999999999965544455          89999997

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=87.63  E-value=0.51  Score=29.54  Aligned_cols=28  Identities=32%  Similarity=0.800  Sum_probs=15.4

Q ss_pred             CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccc
Q 041054          190 DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRST  227 (298)
Q Consensus       190 ~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~  227 (298)
                      +||++.|..|...+-.+.          .-.||-||.+
T Consensus        19 ~Cgf~IC~~C~~~i~~~~----------~g~CPgCr~~   46 (48)
T PF14570_consen   19 ECGFQICRFCYHDILENE----------GGRCPGCREP   46 (48)
T ss_dssp             TTS----HHHHHHHTTSS-----------SB-TTT--B
T ss_pred             cCCCcHHHHHHHHHHhcc----------CCCCCCCCCC
Confidence            499999999998884433          3789999975

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=87.47  E-value=0.27  Score=51.43  Aligned_cols=64  Identities=25%  Similarity=0.571  Sum_probs=48.6

Q ss_pred             cCCCccccccccc---ccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          170 ASDTELCCICFEQ---VCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       170 ~~~~~~C~IC~~~---~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      ......|.||+..   .+.....+|+|.|-.+|...+--.-|..|.. +-....||.|..+|....+.
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRI-tF~FisCPiC~n~InH~~Lk 3549 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRI-TFGFISCPICKNKINHIVLK 3549 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCee-EEeeeecccccchhhhHHHH
Confidence            3445899999976   4557888999999888887776666754433 45667899999999977654

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.09  E-value=0.36  Score=42.90  Aligned_cols=30  Identities=40%  Similarity=1.065  Sum_probs=26.2

Q ss_pred             eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          189 QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       189 ~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      ..|||.+|..|+..+....+          +.||+||.+.
T Consensus        25 l~c~h~~c~~c~~~l~~~~~----------i~cpfcR~~~   54 (296)
T KOG4185|consen   25 LKCGHTICQNCASKLLGNSR----------ILCPFCRETT   54 (296)
T ss_pred             cccCceehHhHHHHHhcCce----------eeccCCCCcc
Confidence            33999999999999977777          7899999885

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.97  E-value=1.3  Score=30.57  Aligned_cols=48  Identities=17%  Similarity=0.081  Sum_probs=40.3

Q ss_pred             CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc
Q 041054           14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW   72 (298)
Q Consensus        14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~   72 (298)
                      ..-|.+|+..|+.++++.+++.+ .+          -...|..|+..-+-+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            34689999999999999999765 11          13579999999999999999987

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.00  E-value=0.86  Score=42.53  Aligned_cols=50  Identities=28%  Similarity=0.608  Sum_probs=35.1

Q ss_pred             cCCCcccccccccccc-----------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          170 ASDTELCCICFEQVCT-----------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~-----------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ......|.||+.....                 .-+.||-|.+-.+|++..--.-+          -.||.||.++-
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk----------l~CPvCR~pLP  634 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK----------LICPVCRCPLP  634 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc----------ccCCccCCCCC
Confidence            3456789999976332                 22458999999999987722122          48999998764

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.08  E-value=0.72  Score=42.08  Aligned_cols=49  Identities=24%  Similarity=0.545  Sum_probs=32.6

Q ss_pred             cccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          174 ELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       174 ~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      -.|.||++...-   +.+.||+|.+|..|+...--..-   ..+......||-+.
T Consensus       185 f~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i---~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  185 FDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQI---QEGQVSCLKCPDPK  236 (445)
T ss_pred             ccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhh---hcceeeeecCCCCC
Confidence            579999987543   78999999999999865422211   11234446676544

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=83.93  E-value=2.3  Score=26.77  Aligned_cols=42  Identities=19%  Similarity=0.509  Sum_probs=28.5

Q ss_pred             ccccccc--cccceEEeCCC-----chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          175 LCCICFE--QVCTIEVQDCG-----HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       175 ~C~IC~~--~~~~~~~~~CG-----H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      .|.||++  ........||.     |.+=..|+..+-....         ...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~---------~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG---------NKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC---------CCcCCCCC
Confidence            4889986  44556788885     6777778766644332         14799885

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=83.51  E-value=1  Score=40.01  Aligned_cols=49  Identities=24%  Similarity=0.575  Sum_probs=35.3

Q ss_pred             CCcccccccccccc--eE--EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCT--IE--VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~--~~--~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ++..|..|++..-.  ..  .-+||-++|.-|.-.+-.+-          .-+||-||+....
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~l----------ngrcpacrr~y~d   65 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNL----------NGRCPACRRKYDD   65 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhc----------cCCChHhhhhccc
Confidence            45669999987432  23  34589999999997774443          3789999987664

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=82.91  E-value=0.89  Score=41.94  Aligned_cols=34  Identities=21%  Similarity=0.552  Sum_probs=25.9

Q ss_pred             cCCCcccccccccccc----eEEeCCCchhHHHHHHHH
Q 041054          170 ASDTELCCICFEQVCT----IEVQDCGHQMCAQCTLAL  203 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l  203 (298)
                      ..+...|.||+++.-.    +....|-|.|=.+|+..+
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w  209 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW  209 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhc
Confidence            3456789999998543    578889999966888555

>PF04641 Rtf2: Rtf2 RING-finger

Probab=82.76  E-value=1.4  Score=38.42  Aligned_cols=59  Identities=14%  Similarity=0.353  Sum_probs=45.2

Q ss_pred             CCCcccccccccc----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEeecCCC
Q 041054          171 SDTELCCICFEQV----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIENQED  241 (298)
Q Consensus       171 ~~~~~C~IC~~~~----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~~~~~  241 (298)
                      .....|.|.....    ..+...+|||.++..++..+-  .          ...||.|..+....-++.++....
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~----------~~~Cp~c~~~f~~~DiI~Lnp~~e  173 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--K----------SKKCPVCGKPFTEEDIIPLNPPEE  173 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--c----------cccccccCCccccCCEEEecCCcc
Confidence            3457787776554    347778999999999998882  1          256999999999888888776555

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=82.75  E-value=1.1  Score=39.70  Aligned_cols=74  Identities=18%  Similarity=0.418  Sum_probs=44.9

Q ss_pred             HHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCC
Q 041054          141 REKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPP  219 (298)
Q Consensus       141 ~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~  219 (298)
                      ..+++....+...|.|.+..- ..+...-..+.+.|.+|+....+. +..--|-.+|-.|....-           ..+.
T Consensus       269 ~~~~~k~~l~~p~PpPPh~~~-~se~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv-----------~~~~  336 (357)
T KOG0826|consen  269 NQRKIKSTLDPPIPPPPHKQY-NSESELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYV-----------VNYG  336 (357)
T ss_pred             HHHhhccCCCCCCCcCChhhc-ccccccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHH-----------HhcC
Confidence            444455555555566553322 222234455678999999875553 333359999999997772           2456


Q ss_pred             CCccccc
Q 041054          220 VCPFCRS  226 (298)
Q Consensus       220 ~Cp~cr~  226 (298)
                      +||+=.-
T Consensus       337 ~CPVT~~  343 (357)
T KOG0826|consen  337 HCPVTGY  343 (357)
T ss_pred             CCCccCC
Confidence            7886443

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=81.83  E-value=2.9  Score=34.13  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=58.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccC------CCCC-----------------CCCC-------hHHHHHHHcC
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCAST------GGYG-----------------CPGS-------TPLHLAARGG   61 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~------~~~~-----------------~~g~-------TpLh~A~~~g   61 (298)
                      ..++.+-.||+..+.++|+++-+.=.-.+..+      ...|                 ..+.       .-|.+|+..|
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qnL~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kg  154 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQNLHIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKG  154 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhccCCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCC
Confidence            34566778999999999999844311111000      0000                 0011       1356788899


Q ss_pred             CHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhcc
Q 041054           62 SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNP  104 (298)
Q Consensus        62 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~  104 (298)
                      -...|...+++|.+++.      ++|..|+..++..++.+++.
T Consensus       155 ll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  155 LLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             CHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            99988888899887754      68999999999998888764

These proteins may be involved in promoting survival of infected macrophages [].

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.31  E-value=1.8  Score=39.30  Aligned_cols=54  Identities=20%  Similarity=0.431  Sum_probs=35.3

Q ss_pred             Ccccccccccccce---EEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          173 TELCCICFEQVCTI---EVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       173 ~~~C~IC~~~~~~~---~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      ...|.||.+-....   ... .|||.|-..|+..+-....        -...||.|+-..-...+.
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~P--------s~R~cpic~ik~~~r~~~   61 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDP--------SNRGCPICQIKLQERHVA   61 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCC--------ccCCCCceeecccceeee
Confidence            46799997665543   222 2999999999977733322        226899999555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	298
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		9e-14
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-13
2xee_A	157	Structural Determinants For Improved Thermal Stabil		8e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-12
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		4e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-11
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-11
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-11
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		9e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-10
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		6e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		1e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		5e-09
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		1e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		1e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-08
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		6e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		8e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		9e-06
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-05
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		1e-04
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		1e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		2e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		2e-04
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		4e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		5e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		8e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		9e-04

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR+   E V +LL +GA V A        G TPLHLAAR G ++ 
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 116
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
           +  LL  GAD   +D  G+ P+ +A++  H   A +L  A+
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD----KNGRTPLHLAARNGHLEV 83
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
           ++ LL  GAD   +D +GR P  +A ++ H     LL  A A
Sbjct: 84  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR+   E V +LL +GA V A        G TPLHLAAR G ++ 
Sbjct: 61  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 116
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
           +  LL  GAD   +D  G+ P+ +A+ + +   A +L  A+
Sbjct: 117 VEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA   A        G TPLHLAA  G  + 
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD----SDGKTPLHLAAENGHKEV 85
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
           ++ LL+ GAD   +D  G+ P  +A ++ H     LL    A+P    S    PL    E
Sbjct: 86  VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
             N+E   LLE
Sbjct: 146 HGNEEVVKLLE 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR+   E V +LL +GA V A        G TPLHLAAR G ++ 
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKD----KDGYTPLHLAAREGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
           +  LL  GAD   +D  G  P  +A +  H     +L  A A+
Sbjct: 96  VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/95 (44%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ ++ LL  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVVKLLLEA 57
Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
           GAD   +D +GR P  +A ++ H     LL  A A
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR+   E V +LL +GA V AS       G TPLHLAA+ G ++ 
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASD----SHGFTPLHLAAKRGHLEI 128
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLH AA++   E V +L+  GA V A        G TPLH AA+ G  + 
Sbjct: 30  VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD----SDGRTPLHYAAKEGHKEI 85
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
           ++ L++ GAD   +D  GR P   A K  H     LL    A+     S    PL    E
Sbjct: 86  VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
             N+E   LLE
Sbjct: 146 HGNEEIVKLLE 156

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAAR    E V +LL +GA V A        GSTPLHLAA+ G ++ 
Sbjct: 40  VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNA----LDFSGSTPLHLAAKRGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL +GAD    D  G  P  +A    H
Sbjct: 96  VEVLLKYGADVNADDTIGSTPLHLAADTGH 125

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           Y   VN  D  GATPLHLAA     E V +LL  GA V A        G TPLHLAA  G
Sbjct: 69  YGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKD----YEGFTPLHLAAYDG 124
Query: 62  SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            ++ +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D +G+TPLHLAA    PE V +LL  GA V A        G TPLHLAA  G ++ 
Sbjct: 40  VNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD----TDGWTPLHLAADNGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL +GAD   +D  G  P  +A    H
Sbjct: 96  VEVLLKYGADVNAQDAYGLTPLHLAADRGH 125

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V AS       G TPLHLAA  G ++ 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----LTGITPLHLAAATGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL  GAD    D  G  P  +A K+ H
Sbjct: 96  VEVLLKHGADVNAYDNDGHTPLHLAAKYGH 125

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           YA  VN  D  G TPLHLAA +   E V +LL  GA V A        G TPLHLAA  G
Sbjct: 69  YAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMD----YQGYTPLHLAAEDG 124
Query: 62  SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            ++ +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 125 HLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA++   E V +LL  GA V AS       G TPLHLAA  G ++ 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----SWGRTPLHLAATVGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA++   E V +LL  GA V AS       G TPLHLAA  G ++ 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----IWGRTPLHLAATVGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D +G TPLHLAA     E V +LL  GA V A    +   GSTPLHLAA  G ++ 
Sbjct: 40  VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNA----HDNDGSTPLHLAALFGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N  D  G TPLH AA     E V +LL  GA   A        G TPLH AA  G  + +
Sbjct: 31  NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD----SDGRTPLHYAAENGHKEIV 86
Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISEL 122
           + LL+ GAD   +D  GR P   A ++ H     LL    A+P    S    PL    E 
Sbjct: 87  KLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREH 146
Query: 123 -NQEAKALLE 131
            N+E   LLE
Sbjct: 147 GNEEIVKLLE 156

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A+       G TPLHLAA  G ++ 
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATD----TYGFTPLHLAADAGHLEI 128
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA V A+       G TPLHLAA  G ++ 
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD----VYGFTPLHLAAMTGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL +GAD    D++G  P  +A    H
Sbjct: 96  VEVLLKYGADVNAFDMTGSTPLHLAADEGH 125

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA++   E V +LL  GA V A        G TPLHLAA  G ++ 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD----IWGRTPLHLAATVGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL +GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A    Y   GSTPLHLAA  G ++ 
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDTLGSTPLHLAAHFGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL  GAD   +D +G  P  +A    H
Sbjct: 96  VEVLLKNGADVNAKDDNGITPLHLAANRGH 125

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLH AA     E V +L+  GA V A        G TPLH AA  G  + 
Sbjct: 30  VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD----SDGRTPLHHAAENGHKEV 85
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLKFISE 121
           ++ L++ GAD   +D  GR P   A ++ H     LL    A+     S    PL    E
Sbjct: 86  VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLARE 145
Query: 122 L-NQEAKALLE 131
             N+E   LLE
Sbjct: 146 HGNEEVVKLLE 156

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA   + E V +LL +GA V AS       G TPLHLAA  G ++ 
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----SAGITPLHLAAYDGHLEI 87
Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
           +  LL  GAD    D +G  P  +A
Sbjct: 88  VEVLLKHGADVNAYDRAGWTPLHLA 112

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA V AS       G TPLHLAA  G ++ 
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASD----VFGYTPLHLAAYWGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALK 92
           +  LL  GAD    D  G  P  +A K
Sbjct: 96  VEVLLKNGADVNAMDSDGMTPLHLAAK 122

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 53/97 (54%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA +   E V +LL +GA V A+       G TPLHLAA  G ++ 
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNAND----HNGFTPLHLAANIGHLEI 128
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 129 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A        G TPLHL A  G ++ 
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA----IDAIGETPLHLVAMYGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           G TPLH AA+    E V  LL  GA V A +      G+TPLHLAA+ G  + ++ LLA 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNARS----KDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
           GAD   R   G  P  +A K+ H     LL+   A+
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A+    G  G TPLHLAA    ++ 
Sbjct: 40  VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT----GNTGRTPLHLAAWADHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA V A        G TPL+LAA  G ++ 
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKD----ATGITPLYLAAYWGHLEI 116
Query: 66  IRELLAWGADRLHRDVSGRIPYAVAL 91
           +  LL  GAD   +D  G+  + +++
Sbjct: 117 VEVLLKHGADVNAQDKFGKTAFDISI 142

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA V A        GSTPLHLAA  G ++ 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA----IDIXGSTPLHLAALIGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
           +  LL  GAD    D  G  P  +A
Sbjct: 96  VEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL  GA V A        GSTPLHLAA  G ++ 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA----IDIMGSTPLHLAALIGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
           +  LL  GAD    D  G  P  +A
Sbjct: 96  VEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA+    E V +LL  GA V A        G TPLHLAA  G ++ 
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDN----FGITPLHLAAIRGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A        G TPL LAA  G ++ 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA----VDHAGMTPLRLAALFGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  LL  GAD    D+ G  P  +A    H
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGH 125

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPL+LA      E V +LL +GA V A        G TPLHLAA  G ++ 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD----AIGFTPLHLAAFIGHLEI 95
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N++D  G TPLH A      + V +LL   ALV  +T GY     +PLH AA+ G +D +
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV--NTTGY--QNDSPLHDAAKNGHVDIV 92
Query: 67  RELLAWGADRLHRDVSGRIP 86
           + LL++GA R   ++ G  P
Sbjct: 93  KLLLSYGASRNAVNIFGLRP 112

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN+    G++PLH+AA   R + + +LL  GA    + G      + PLHLA + G    
Sbjct: 79  VNVTSQDGSSPLHVAALHGRADLIPLLLKHGA----NAGARNADQAVPLHLACQQGHFQV 134
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL   A    +D+SG  P   A    H    ALL
Sbjct: 135 VKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALL 171

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 20  AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
           AAR  + + V IL+ +GA V A        GSTPLHLAAR G ++ ++ LL  GAD   +
Sbjct: 31  AARAGQDDEVRILMANGADVAAKD----KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 80  DVSGRIPYAVALKHKHGACAALL 102
           D  G+  + +++ + +   A +L
Sbjct: 87  DKFGKTAFDISIDNGNEDLAEIL 109

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N+ +  G TPLHL A++       +L+  G +V A+T      G TPLH+A+  G+I  +
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT----RMGYTPLHVASHYGNIKLV 327
Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
           + LL   AD   +   G  P   A +  H     LL    A P
Sbjct: 328 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 49/121 (40%), Gaps = 31/121 (25%)
Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGA------------LVCASTGGY------ 46
            VN  D RG TPL  A+     E V  LL+ GA            L  ASTGGY      
Sbjct: 28  LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Query: 47  -----------GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY--AVALKH 93
                         G TPL  A RG  + C+  LLA GAD      SG  P   AVAL +
Sbjct: 88  LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
Query: 94  K 94
           +
Sbjct: 148 R 148

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N++D  G +P+H AAR    + + +L++ GA V A        GS P+HLA R G    +
Sbjct: 68  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA----LDSTGSLPIHLAIREGHSSVV 123
Query: 67  RELLAWGADRLHRDVSGRIPYAVA 90
              LA  +D  HRD SG  P  +A
Sbjct: 124 -SFLAPESDLHHRDASGLTPLELA 146

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N++D  G +P+H AAR    + + +L++ GA V A        GS P+HLA R G    +
Sbjct: 70  NVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNA----LDSTGSLPIHLAIREGHSSVV 125
Query: 67  RELLAWGADRLHRDVSGRIPYAVA 90
              LA  +D  HRD SG  P  +A
Sbjct: 126 -SFLAPESDLHHRDASGLTPLELA 148

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 20  AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
           AAR  + + V IL+ +GA V A        GSTPLHLAAR G ++ ++ LL  GAD   +
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKN----GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 80  DVSGRIPYAVALKHKHGACAALL 102
           D  G+  + +++ + +   A +L
Sbjct: 69  DKFGKTAFDISIDNGNEDLAEIL 91

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G +PLH A R+ R   V +L+  GA +     G      TPLHLAA  G  D 
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGHRDI 87
Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
           +++LL + AD    +  G +P   A
Sbjct: 88  VQKLLQYKADINAVNEHGNVPLHYA 112

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G +PLH A R+ R   V +L+  GA +     G      TPLHLAA  G  D 
Sbjct: 27  LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGHRDI 82
Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
           +++LL + AD    +  G +P   A
Sbjct: 83  VQKLLQYKADINAVNEHGNVPLHYA 107

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 48/121 (39%), Gaps = 31/121 (25%)
Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGA------------LVCASTGGY------ 46
            VN  D RG TPL  A+     E V  LL+ GA            L  ASTGGY      
Sbjct: 28  LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Query: 47  -----------GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY--AVALKH 93
                         G TPL  A  G  + C+  LLA GAD      SG  P   AVAL +
Sbjct: 88  LLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY 147
Query: 94  K 94
           +
Sbjct: 148 R 148

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 20  AARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR 79
           AAR  + + V IL+ +GA V A        G TPLHLAAR G ++ +  LL  GAD   +
Sbjct: 9   AARAGQDDEVRILMANGADVNAKDKD----GYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 80  DVSGRIPYAVALKHKHGACAALLNPAS 106
           D  G+  + +++ + +   A +L  A+
Sbjct: 65  DKFGKTAFDISIDNGNEDLAEILQKAA 91

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPL  +      E  + LL+ GA    +       G TPL +A++ G  + 
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA----NVNDRNLEGETPLIVASKYGRSEI 149
Query: 66  IRELLAWGADRLHRDVSG 83
           +++LL  GAD   RD++G
Sbjct: 150 VKKLLELGADISARDLTG 167

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G T LH AA     E V+ILL    +  A+         TPL LAAR GS + 
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILL----MHHANRDAQDDKDETPLFLAAREGSYEA 199
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
            + LL   A+R   D   R+P  VA +  H     LL+
Sbjct: 200 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 237

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
           DGR +TPLHLAA   R   V +LL  GA V A   G    G  PLH A   G  +    L
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG----GLVPLHNACSYGHYEVTELL 110
Query: 70  LAWGA 74
           L  GA
Sbjct: 111 LKHGA 115

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           G TPLH+A   +  E V +L D+GA +        C G TPLHLA    +   +  LL  
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-GRTPLHLAVEAQAASVLELLLKA 214
Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALL 102
           GAD   R   GR P   AL   +   A LL
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           G TPLH+A   +  E V +L D+GA +        C G TPLHLA    +   +  LL  
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-GRTPLHLAVEAQAASVLELLLKA 214
Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALL 102
           GAD   R   GR P   AL   +   A LL
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLL 244

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGAL--VCASTGGYGCPGSTPLHLAARGGS 62
            V+ +D  G+T LHLAA++   E V  LL +G +   C   GG+     TP+  A     
Sbjct: 69  LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGW-----TPMIWATEYKH 123
Query: 63  IDCIRELLAWGADRLHRD 80
           +D ++ LL+ G+D   RD
Sbjct: 124 VDLVKLLLSKGSDINIRD 141

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/144 (33%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 6   VNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI 63
           VN RD  GR +TPLH AA   R   V  LL  GA V A   G    G  PLH A   G  
Sbjct: 37  VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHY 92
Query: 64  DCIRELLAWGADRLHRDVSGRIP-YAVALKHKHGACAALLNPASAEPLV----WPSPLKF 118
           +    L+  GA     D+    P +  A K K+  C  LL    A+P        +PL  
Sbjct: 93  EVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRDGNTPLDL 151
Query: 119 ISELNQEAKALL--ENALMEANKE 140
           + + + + + LL  + AL++A K+
Sbjct: 152 VKDGDTDIQDLLRGDAALLDAAKK 175

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
           D  G +PLHLAA+        +LL +G    A T        TPLH+AA  G  + +  L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----VDRTPLHMAASEGHANIVEVL 86
Query: 70  LAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           L  GAD   +D+        A +H H     LL
Sbjct: 87  LKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
           D    T LH AA   R + V   +  GA+V    G      STPLH A R G +  + +L
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN---STPLHWATRQGHLSMVVQL 95
Query: 70  LAWGAD 75
           + +GAD
Sbjct: 96  MKYGAD 101

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N++D  G +P+H AAR    + + +L++ GA V    G     G+ P+HLA + G    +
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV 123
Query: 67  RELLAWGADRLHRDVSGRIPYAVALK 92
              LA  +D   RD  G  P  +AL+
Sbjct: 124 -SFLAAESDLHRRDARGLTPLELALQ 148

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N++D  G +P+H AAR    + + +L++ GA V    G     G+ P+HLA + G    +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG----TGALPIHLAVQEGHTAVV 117
Query: 67  RELLAWGADRLHRDVSGRIPYAVALK 92
              LA  +D   RD  G  P  +AL+
Sbjct: 118 -SFLAAESDLHRRDARGLTPLELALQ 142

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 30/136 (22%)
Query: 1   GYARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GS-- 51
           G+A  VNI      +PLH A       CV ILL  GA V   T  +  P       GS  
Sbjct: 26  GWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD 83
Query: 52  -------------------TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK 92
                              +P+H AAR G ++C+  L+A+G +  H+      P  +A +
Sbjct: 84  CVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACE 143
Query: 93  HKHGACAALLNPASAE 108
           ++  AC   L  + A+
Sbjct: 144 NQQRACVKKLLESGAD 159

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G TPL  AA   +   V  LL +GA         G    + L LA   G  D 
Sbjct: 45  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDI 100
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
           ++ LL  G D    D +G  P   A+   H  C  +L  + A+P +
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G TPL  AA   +   V  LL +GA         G    + L LA   G  D 
Sbjct: 27  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----DPQLLGKGRESALSLACSKGYTDI 82
Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
           ++ LL  G D    D +G  P   A+   H  C  +L  + A+P +
Sbjct: 83  VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	298
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-09
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-10
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-14
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-05
2pnn_A	273	Transient receptor potential cation channel subfa	5e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-15
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-10
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-10
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	9e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-11
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	9e-12
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-08
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-10
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-07
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-04
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	4e-05
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	6e-05
2ea5_A	68	Cell growth regulator with ring finger domain prot	3e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	5e-04

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN       TPL  A      +CV++LL  GA V   +        +P+H AAR G ++C
Sbjct: 118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-----SPIHEAARRGHVEC 172

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L+A+G +  H+      P  +A +++  AC   L
Sbjct: 173 VNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 209

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 5/98 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++ +     TPL+LA   ++  CV  LL+SGA V    G       +PLH   R  S + 
Sbjct: 183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD-----SPLHAVVRTASEEL 237

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
              L+ +GAD   ++  G+ P  +       A   L  
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
           +  +        +P+H AA       +  L+  G  V   T        +PLH A  GG 
Sbjct: 49  SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITAD----HVSPLHEACLGGH 104

Query: 63  IDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           + C++ LL  GA           P   A       C  LL
Sbjct: 105 LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 6   VNIRDGR-----GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           +   DG+     G+ P              I L S  L+  +   +     +P+H AA  
Sbjct: 21  MASMDGKQGGMDGSKPAGPRD------FPGIRLLSNPLMGDAVSDW-----SPMHEAAIH 69

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           G    +R L++ G            P   A    H +C  +L
Sbjct: 70  GHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.4 bits (202), Expect = 1e-17
 Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 4/103 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V+     G TPLH+A+     + V  LL   A V A T      G +PLH AA+ G  D 
Sbjct: 304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL----GYSPLHQAAQQGHTDI 359

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAE 108
           +  LL  GA        G  P A+A +  + +   +L   + E
Sbjct: 360 VTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE 402

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 3e-16
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +     TPLH AAR      V +LL++ A    +T      G TPLH+AAR G ++ 
Sbjct: 73  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA----GHTPLHIAAREGHVET 128

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL   A +      G  P  VA K+     A LL
Sbjct: 129 VLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.6 bits (187), Expect = 1e-15
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N+ + +  TPLH+AAR    E    LL + A V A          TPLH AAR G  + 
Sbjct: 40  PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD----DQTPLHCAARIGHTNM 95

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL   A+      +G  P  +A +  H      L
Sbjct: 96  VKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N    +G TPLHLAA++   E V +LL   A            G TPLHL A+ G +  
Sbjct: 238 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS----GLTPLHLVAQEGHVPV 293

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              L+  G         G  P  VA  + +      L
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                 +G TPLH+AA+  +     +LL+  A   A+       G TPLH+A    ++D 
Sbjct: 139 QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN----GLTPLHVAVHHNNLDI 194

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           ++ LL  G        +G  P   A              +G 
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +     G TPLH+AA+Q + E    LL  G    A +      G TPLHLAA+ G  + 
Sbjct: 205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ----GVTPLHLAAQEGHAEM 260

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL+  A+    + SG  P  +  +  H   A +L
Sbjct: 261 VALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N+    G TPLH+AAR+   E V  LL+  A     T      G TPLH+AA+ G +  
Sbjct: 106 PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKK----GFTPLHVAAKYGKVRV 161

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              LL   A       +G  P  VA+ H +     LL
Sbjct: 162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.4 bits (176), Expect = 4e-14
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                  G TPLH+A+       V  LL  GA    S         TPLH+AAR G  + 
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVK----VETPLHMAARAGHTEV 62

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            + LL   A    +    + P   A  + H         + A
Sbjct: 63  AKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNA 104

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 76.3 bits (189), Expect = 4e-17
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +I      + L LA+     + V +LL+    +          G TPL  A RG  + C
Sbjct: 62  PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN----GGTPLLYAVRGNHVKC 117

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LLA GAD      SG  P  +A+   +     ++
Sbjct: 118 VEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVI 154

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 4/100 (4%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
              VN  D RG TPL  A+     E V  LL+ GA              + L LA+ GG 
Sbjct: 26  DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE----RESALSLASTGGY 81

Query: 63  IDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            D +  LL    D    D +G  P   A++  H  C   L
Sbjct: 82  TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 7e-15
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 4/81 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +NI D  G TPL  A R    +CV  LL  GA +          G TP+ LA   G    
Sbjct: 95  INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADS----GYTPMDLAVALGYRKV 150

Query: 66  IRELLAWGADRLHRDVSGRIP 86
            + +          ++    P
Sbjct: 151 QQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 65.5 bits (161), Expect = 3e-13
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
            +  +H  A Q   + +   L  G  +       G    TPL  A+  G I+ +R LL W
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGF---TPLIWASAFGEIETVRFLLEW 58

Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALL 102
           GAD            ++A    +     LL
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLL 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.9 bits (188), Expect = 5e-17
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             +      + L LA  +   + V +LLD G  V          G TPL  A  G  + C
Sbjct: 62  PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----GGTPLLYAVHGNHVKC 117

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL  GAD      SG     +A+   + +   ++
Sbjct: 118 VKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.7 bits (177), Expect = 2e-15
 Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G TPL  AA   +   V  LL +GA       G      + L LA   G  D 
Sbjct: 29  INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG----RESALSLACSKGYTDI 84

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL  G D    D +G  P   A+   H  C  +L
Sbjct: 85  VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKML 121

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPL  A      +CV +LL+SGA     T      G   + LA   G    
Sbjct: 95  VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDS----GYNSMDLAVALGYRSV 150

Query: 66  IRELLAWGAD 75
            + + +    
Sbjct: 151 QQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 65.1 bits (160), Expect = 4e-13
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 4/92 (4%)

Query: 11  GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
           G  +  +H  A Q     +   ++   ++  +       G TPL  AA  G I  +  LL
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEE----GFTPLMWAAAHGQIAVVEFLL 56

Query: 71  AWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
             GAD            ++A    +     +L
Sbjct: 57  QNGADPQLLGKGRESALSLACSKGYTDIVKML 88

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 75.6 bits (187), Expect = 8e-17
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V+  D  G T L   A     +CV +L ++GA +       G    T LH+AA     + 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL---TALHMAAGYVRPEV 125

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L+  GAD    D  G     +A +          
Sbjct: 126 VEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 5/77 (6%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           ++ RD R G T LH+AA   RPE V  L++ GA +          G T L LA       
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----GLTALELAREILKTT 157

Query: 65  CIRELLAWGADRLHRDV 81
                + +G       V
Sbjct: 158 PKGNPMQFGRRIGLEKV 174

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 19/102 (18%), Positives = 27/102 (26%), Gaps = 18/102 (17%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +   G GA    +  +              A V +          TP   AAR      
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-------YETPWWTAARKADEQA 59

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           + +LL    D    D +GR    +   L            GA
Sbjct: 60  LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 73.6 bits (182), Expect = 2e-16
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N++D  G TPLH A      + V +LL   ALV  +    G    +PLH AA+ G +D 
Sbjct: 36  PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTT----GYQNDSPLHDAAKNGHVDI 91

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL++GA R   ++ G  P          +   L 
Sbjct: 92  VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLP 128

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.1 bits (152), Expect = 2e-12
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 14/99 (14%)

Query: 9   RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
            + RG T LH+A+ +     V  LL +G+            G TPLH A   G +  +  
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA----GWTPLHEACNHGHLKVVEL 61

Query: 69  LLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           LL   A           P   A    H         +GA
Sbjct: 62  LLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 55.9 bits (136), Expect = 5e-10
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN    +  +PLH AA+    + V +LL  GA   A        G  P+           
Sbjct: 69  VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----GLRPVDYTDDESMKS- 123

Query: 66  IRELLAWGAD 75
           +  L      
Sbjct: 124 LLLLPEKNES 133

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 76.8 bits (190), Expect = 2e-16
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 4/101 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +++++  G T LHLAA       V  L  +GA V  +  G    G T LHLA R  +  C
Sbjct: 38  LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----GHTALHLACRVRAHTC 93

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPAS 106
              LL              +  +           A ++   
Sbjct: 94  ACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQP 134

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.9 bits (185), Expect = 8e-16
 Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +   +  G TPLH+A   +  E V +L D+GA +       G    TPLHLA    +   
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGR---TPLHLAVEAQAASV 207

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   R   GR P   AL   +   A LL
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.9 bits (172), Expect = 5e-14
 Identities = 30/145 (20%), Positives = 44/145 (30%), Gaps = 7/145 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGA---LVCASTGGYGCPGSTPLHLAARGGS 62
                  G T LHLA   +    +  LL   A    +          G T LHLAA  G 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL----GQTALHLAAILGE 57

Query: 63  IDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISEL 122
              + +L A GA  L  +  G     +A + +   CA +L           S        
Sbjct: 58  ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ 117

Query: 123 NQEAKALLENALMEANKEREKNILK 147
           +         A +++    E     
Sbjct: 118 DCTPDTSHAPAAVDSQPNPENEEEP 142

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 69.1 bits (170), Expect = 9e-14
 Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 6   VNIRDG-RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           +N  +   G TPLHLA   +    + +LL +GA   A   G    G TPL  A    +  
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----GRTPLGSALLRPNPI 239

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
             R L A GA           P + +     
Sbjct: 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
              R   G TPL  A  +  P    +L   GA      G       +P   +      D 
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGD----KLSPCSSSGSDSDSDN 273

Query: 66  IRELL 70
             E  
Sbjct: 274 RDEGD 278

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.2 bits (152), Expect = 2e-11
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGA---------LVCASTGGYGCPGSTPLHL 56
           V + +  G T LHLA R R   C  +LL              +  S          P  +
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

Query: 57  AARGGSIDCIRELL-AWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            ++    +        W       +  G  P  VA+ HK      LL
Sbjct: 131 DSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 75.2 bits (186), Expect = 1e-15
 Identities = 35/102 (34%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +  DGR +TPLHLAA   R   V +LL  GA V A   G    G  PLH A   G  + 
Sbjct: 51  CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKG----GLVPLHNACSYGHYEV 106

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
              LL  GA     D+    P   A +            HGA
Sbjct: 107 TELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGA 148

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 4e-14
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN ++    TPLH+AA +   + + +L   GA + A        G T LH AA  G +  
Sbjct: 240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSL----GQTALHRAALAGHLQT 295

Query: 66  IRELLAWGADRLHRDVSGRIP 86
            R LL++G+D     + G   
Sbjct: 296 CRLLLSYGSDPSIISLQGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.8 bits (172), Expect = 9e-14
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V+ +D  G  PLH A      E   +LL  GA V A          TPLH AA    ++ 
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLW----QFTPLHEAASKNRVEV 139

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
              LL+ GAD    +  G+    +A   +         
Sbjct: 140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.7 bits (156), Expect = 1e-11
 Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 6   VNIRDGRGATPLHLAARQR-RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
             +        L  AAR     + + +L        AS G      STPLHLAA    + 
Sbjct: 17  AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGR----KSTPLHLAAGYNRVR 72

Query: 65  CIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            ++ LL  GAD   +D  G +P   A +  H         HGA
Sbjct: 73  IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.4 bits (150), Expect = 6e-11
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G T LH AA     +   +LL  G+     +      G T   +       + 
Sbjct: 273 MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQ----GFTAAQMGN-----EA 323

Query: 66  IRELLAWGADRLHRDVSGRIPYA 88
           ++++L+        DV  R+  A
Sbjct: 324 VQQILSESTPMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 9e-11
 Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 17/105 (16%)

Query: 6   VNIRDGRGATPLHLAAR---QRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
              +     T LH A      +R +   +LL  GA V            TPLH+AA    
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----FMTPLHVAAERAH 259

Query: 63  IDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            D +  L   GA     D  G+     A    H         +G+
Sbjct: 260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGS 304

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.7 bits (143), Expect = 5e-10
 Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 20/117 (17%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP---------------- 49
             + +  G + + +A      E +       +L+ A+                       
Sbjct: 150 PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQ 209

Query: 50  -GSTPLHLAARGG---SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              T LH A              LL  GA+   ++     P  VA +  H     +L
Sbjct: 210 SHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.2 bits (108), Expect = 1e-05
 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 11/56 (19%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
            +I   +G T   +       E V  +L     +  S           L  A++ G
Sbjct: 306 PSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV------DYRLLEASKAG 350

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.6 bits (179), Expect = 3e-15
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V+  D  G T L   A     +CV +L ++GA +       G    T LH+AA     + 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL---TALHMAAGYVRPEV 126

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L+  GAD    D  G     +A +          
Sbjct: 127 VEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 19/96 (19%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           +   G GA    +  +              A V +          TP   AAR      +
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE-------YETPWWTAARKADEQAL 61

Query: 67  RELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            +LL    D    D +GR             C  LL
Sbjct: 62  SQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 18/103 (17%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGA---------LVCASTGGYGCP------- 49
           + + D RG T L LA    +       +  G          ++      Y          
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKR 196

Query: 50  --GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA 90
             G    +L       DC        A+ + +D    + YAVA
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDGLEYAVA 239

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 70.6 bits (174), Expect = 3e-15
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N  +  G  P+ +           +LL  GA    +        + P+H AAR G +D 
Sbjct: 38  PNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADP-AT--LTRPVHDAAREGFLDT 93

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L   GA    RD  GR+P  +A +  H   A  L
Sbjct: 94  LVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 10/91 (10%)

Query: 6   VNIRDGRGAT-PLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            N  D    T P+H AAR+   + + +L  +GA +          G  P+ LA   G  D
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----GRLPVDLAEELGHRD 125

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
             R L A           G     +      
Sbjct: 126 VARYLRAAAG-----GTRGSNHARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 60.6 bits (148), Expect = 2e-11
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++        L  AA + R E V  LL++GA   A        G  P+ +    GS   
Sbjct: 7  SSMEPSA--DWLATAAARGRVEEVRALLEAGANPNAPNSY----GRRPIQVMMM-GSARV 59

Query: 66 IRELLAWGAD 75
             LL  GA+
Sbjct: 60 AELLLLHGAE 69

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.1 bits (126), Expect = 1e-08
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           +++RD  G  P+ LA      +    L  +              GS    + A  G  D
Sbjct: 104 LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGT---------RGSNHARIDAAEGPSD 153

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP-YAVALKH--------KHGA 97
           +  L  AA  G ++ +R LL  GA+    +  GR P   + +           HGA
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGA 68

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 5e-15
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N  +  G  P+ +       +   +LL  GA    +        + P+H AAR G +D 
Sbjct: 38  PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADP-ATL--TRPVHDAAREGFLDT 93

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L   GA     D  GR+P  +A +  H   A  L
Sbjct: 94  LVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.1 bits (165), Expect = 4e-14
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
          +++  G     L  AA + + E V  LL++GA   A        G  P+ +    GS   
Sbjct: 5  IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRF----GRRPIQVMMM-GSAQV 59

Query: 66 IRELLAWGAD 75
             LL  GA+
Sbjct: 60 AELLLLHGAE 69

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.7 bits (164), Expect = 5e-14
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 5/71 (7%)

Query: 6   VNIRDGRGAT-PLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            N  D    T P+H AAR+   + + +L  +GA +          G  P+ LA   G  D
Sbjct: 70  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW----GRLPVDLAEEQGHRD 125

Query: 65  CIRELLAWGAD 75
             R L A   D
Sbjct: 126 IARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP-YAVALKHK--------HGA 97
              L  AA  G ++ +R+LL  GAD    +  GR P   + +           HGA
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSAQVAELLLLHGA 68

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.5 bits (178), Expect = 5e-15
 Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 15/113 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA----------STGGYGCPGSTPLH 55
                 +G T LH+A  +R    V +L+++GA V A                  G  PL 
Sbjct: 94  YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLS 153

Query: 56  LAARGGSIDCIRELLAWG---ADRLHRDVSGRIP--YAVALKHKHGACAALLN 103
           LAA    +  ++ LL      AD   RD  G       V +          + 
Sbjct: 154 LAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT 206

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 26/148 (17%), Positives = 42/148 (28%), Gaps = 28/148 (18%)

Query: 6   VNIRDG-RGATPLHLA---ARQRRPECVHILLDSGALVCASTGGYGCP-------GSTPL 54
              +D   G T L  A       + + + +LLD      +               G T L
Sbjct: 46  SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

Query: 55  HLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS 114
           H+A    ++  +  L+  GAD                   +                   
Sbjct: 106 HIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE---------------L 150

Query: 115 PLKFISELNQE--AKALLENALMEANKE 140
           PL   +  NQ    K LL+N+   A+  
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADIS 178

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 21/104 (20%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHI---------LLDSGALVCASTGGYGCP---GSTP 53
           ++ RD  G T LH           +          +L  GA +  +          G TP
Sbjct: 177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTP 236

Query: 54  LHLAARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHKH 95
           L LAA  G I  +  +       L R++        A    H H
Sbjct: 237 LALAASSGKIGVLAYI-------LQREIHEPECRHAAAHHHHHH 273

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.8 bits (177), Expect = 6e-15
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN ++   G T LHLA   + P+ V +LL  GA V   T      G +P  L     S  
Sbjct: 143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----GYSPYQLTWGRPSTR 198

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
             ++L     + L          +   + + 
Sbjct: 199 IQQQLGQLTLENLQMLPESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 8e-15
 Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 20/108 (18%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N ++    TPLHLA    +PE    LL +G             G+TPLHLA   G +  
Sbjct: 38  LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR----GNTPLHLACEQGCLAS 93

Query: 66  IRELLAWGADRLH------RDVSGRIP--YAVALKHK--------HGA 97
           +  L                + +G      A    +          GA
Sbjct: 94  VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.4 bits (176), Expect = 8e-15
 Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 19/108 (17%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG-----GYGCPGSTPLHLAARG 60
             +RD RG TPLHLA  Q     V +L  S       +        G    T LHLA+  
Sbjct: 71  PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH---TCLHLASIH 127

Query: 61  GSIDCIRELLAWGADRLHRD-VSGRIP--YAVALKHK--------HGA 97
           G +  +  L++ GAD   ++  +GR     AV L++          GA
Sbjct: 128 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGA 175

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.6 bits (148), Expect = 5e-11
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 8/94 (8%)

Query: 13  GATPLHLAARQ----RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRE 68
           G + LHLA          E +  +    A +            TPLHLA      +    
Sbjct: 8   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL----QQTPLHLAVITNQPEIAEA 63

Query: 69  LLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           LL  G D   RD  G  P  +A +    A   +L
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.6 bits (179), Expect = 6e-15
 Identities = 26/146 (17%), Positives = 38/146 (26%), Gaps = 16/146 (10%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               D  G +  + A        V  LL++GAL              PLH AA       
Sbjct: 24  TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE------NEFPLHQAATLEDTKI 77

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV-----WPSPLKFIS 120
           ++ LL  G D    D  G      A+   +     L    +   +      W +      
Sbjct: 78  VKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAV 137

Query: 121 ELNQE--AKALLENALMEANKEREKN 144
            LN        L       +      
Sbjct: 138 MLNDVSIVSYFLSEI---PSTFDLAI 160

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 3e-12
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 17/104 (16%)

Query: 6   VNIRDGRG-ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           +      G  T  + A        V   L                  + +H+  + G +D
Sbjct: 121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-----SCIHITIKNGHVD 175

Query: 65  CIRELLAWGADRLHRDVSGRIP---YAVALKHK--------HGA 97
            +  LL +       +    IP    A+  K          +  
Sbjct: 176 MMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.7 bits (143), Expect = 4e-10
 Identities = 9/71 (12%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTP-LHLAARGGSID 64
                    + +H+  +    + + +LLD       +          P + LA     I+
Sbjct: 154 STFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL----LFIPDIKLAIDNKDIE 209

Query: 65  CIRELLAWGAD 75
            ++ L  +  +
Sbjct: 210 MLQALFKYDIN 220

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 7/91 (7%), Positives = 20/91 (21%), Gaps = 12/91 (13%)

Query: 6   VNIRDGRGATP-LHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            N  +     P + LA   +  E +  L      +            +           +
Sbjct: 187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI-----------YSANLENVLLDDAE 235

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
             + ++    +      +  +      K   
Sbjct: 236 IAKMIIEKHVEYKSDSYTKDLDIVKNNKLDE 266

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.8 bits (172), Expect = 9e-15
 Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
              +N  D  G +PLH A R+ R   V +L+  GA +     G      TPLHLAA  G 
Sbjct: 29  ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----DDTPLHLAASHGH 84

Query: 63  IDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            D +++LL + AD    +  G +P   A        A  L
Sbjct: 85  RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.9 bits (162), Expect = 3e-13
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  +  G  PLH A    + +    L+ +GALV          G  P+  A        
Sbjct: 98  INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY----GEMPVDKAKAPLRELL 153

Query: 66  IRELLAWGAD 75
                  G +
Sbjct: 154 RERAEKMGQN 163

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.3 bits (137), Expect = 6e-10
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 13/95 (13%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
              +    R+     V + LD+          +G    +PLH A R G    +  L+  
Sbjct: 5  FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF---SPLHWACREGRSAVVEMLIMR 61

Query: 73 GADRLHRDVSGRIP--YAVALKHK--------HGA 97
          GA     +     P   A +  H+        + A
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V   D    T LH AA   R + V   +  GA+V    G      STPLH A R G +  
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN---STPLHWATRQGHLSM 91

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           + +L+ +GAD    D  G     +A +  H +  A L
Sbjct: 92  VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 70.5 bits (174), Expect = 2e-14
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 6   VNIRDGRGATPLHLAARQ-RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           V++ D  G TPL  AA +    +   +LL     V      +     T LH A   G+  
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN---TALHWAVLAGNTT 191

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            I  LL  GA+   +++ G     +A + K+      L
Sbjct: 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
          +   D      +  A +    E    L+++G  V            T LH AA    ID 
Sbjct: 2  MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE----NVTLLHWAAINNRIDL 57

Query: 66 IRELLAWGAD 75
          ++  ++ GA 
Sbjct: 58 VKYYISKGAI 67

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.8 bits (154), Expect = 9e-12
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA-RGGSID 64
            ++ DG G + +HLAA+      V  L+  G  V          G TPL  AA R  S+D
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN----GMTPLMWAAYRTHSVD 157

Query: 65  CIRELLAWGAD 75
             R LL +   
Sbjct: 158 PTRLLLTFNVS 168

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 59.4 bits (145), Expect = 1e-10
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN+ D     T LH A        + +LL++GA V A        G + L LA +  ++ 
Sbjct: 169 VNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIK----GESALDLAKQRKNVW 224

Query: 65  CIRELLAWGADR 76
            I  L      +
Sbjct: 225 MINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 10/58 (17%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +  +  A + G  +  REL+  G D    D        +A               GA
Sbjct: 9  STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 14/110 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP---------GSTPLHL 56
                 +G + LH+A  +R  +CV +L+++GA V     G             G  PL L
Sbjct: 83  CTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL 142

Query: 57  AARGGSIDCIRELL---AWGADRLHRDVSGRIP--YAVALKHKHGACAAL 101
           AA     D +  LL      A     D  G       V +       +AL
Sbjct: 143 AACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.0 bits (156), Expect = 4e-12
 Identities = 28/147 (19%), Positives = 38/147 (25%), Gaps = 28/147 (19%)

Query: 6   VNIRDGRGATPLHLAARQRRP---ECVHILLDSGALVCASTGGYGCP-------GSTPLH 55
                  G T L  A    +     C+  LL                       G + LH
Sbjct: 36  AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALH 95

Query: 56  LAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSP 115
           +A    S+ C++ L+  GAD   R                G                  P
Sbjct: 96  IAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGE----------------LP 139

Query: 116 LKFISELNQE--AKALLENALMEANKE 140
           L   +   Q      LLEN    A+ E
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLE 166

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.4 bits (144), Expect = 1e-10
 Identities = 18/112 (16%), Positives = 30/112 (26%), Gaps = 15/112 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSG---------------ALVCASTGGYGCPG 50
                  G  PL LAA  ++ + V  LL++                 L          P 
Sbjct: 129 QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPE 188

Query: 51  STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ L +    G +     L          +  G  P  +A K         +
Sbjct: 189 NSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 7/78 (8%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +   +    + L +       +    L  +  L   S       G TPL LAA+ G I+ 
Sbjct: 181 MIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ----GLTPLKLAAKEGKIEI 236

Query: 66  IRELL---AWGADRLHRD 80
            R +L     GA   H  
Sbjct: 237 FRHILQREFSGAAAHHHH 254

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLD-SGALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN  D  G+T L+ A      + V +L       +          G T LH AA  G  D
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKL----GDTALHAAAWKGYAD 154

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEP 109
            ++ LLA GA    R++  ++ + +A      +         A  
Sbjct: 155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.7 bits (166), Expect = 1e-13
 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N ++  G T LH AA +   + V +LL  GA                  +A        
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----KKLAFDMATNAACASL 188

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +++     A R   +    +    +    H
Sbjct: 189 LKKKQGTDAVRTLSNAEDYLDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 17/97 (17%), Positives = 24/97 (24%), Gaps = 9/97 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +        T                 L     V             PLH AA+ G++  
Sbjct: 38  IIYITDMSDTNWWKGT-----SKGRTGLIPSNYVAEQAES----IDNPLHEAAKRGNLSW 88

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +RE L         D +G      A    H     +L
Sbjct: 89  LRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 10/77 (12%), Positives = 12/77 (15%), Gaps = 9/77 (11%)

Query: 7  NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
                G   +  A     P     L      +   T        T        G    I
Sbjct: 6  PKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDM----SDTNWWKGTSKGRTGLI 61

Query: 67 RELLAWGADR-----LH 78
                         LH
Sbjct: 62 PSNYVAEQAESIDNPLH 78

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 6/47 (12%), Positives = 10/47 (21%)

Query: 49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
          PG   +  A          EL     D ++        +        
Sbjct: 11 PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N++D  G +P+H AAR    + + +L++ GA V    G     G+ P+HLA + G    
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----GALPIHLAVQEGHTAV 116

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +   LA  +D   RD  G  P  +AL+        +L
Sbjct: 117 V-SFLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 4e-13
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 5/97 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +  +  G T L +            LL  GA            G++P+H AAR G +D 
Sbjct: 29  PDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTS----GTSPVHDAARTGFLDT 83

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ L+  GAD    D +G +P  +A++  H A  + L
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN+ DG GA P+HLA ++     V  L  + + +          G TPL LA + G+ D 
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDAR----GLTPLELALQRGAQDL 148

Query: 66  IRELL 70
           +  L 
Sbjct: 149 VDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 53.6 bits (130), Expect = 4e-09
 Identities = 26/97 (26%), Positives = 31/97 (31%), Gaps = 16/97 (16%)

Query: 12 RGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL 70
          R    L  AA +   + V  LL        A    +G    T L +    GS     ELL
Sbjct: 1  RAGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGK---TALQVMMF-GSTAIALELL 55

Query: 71 AWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            GA    +D SG  P   A              HGA
Sbjct: 56 KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA 92

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
               L  AAR  + + V IL+ +GA V A        GSTPLHLAAR G ++ ++ LL  
Sbjct: 24  LGKKLLEAARAGQDDEVRILMANGADVAAKDKN----GSTPLHLAARNGHLEVVKLLLEA 79

Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALL 102
           GAD   +D  G+  + +++ + +   A +L
Sbjct: 80  GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 51.0 bits (123), Expect = 1e-08
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V  +D  G+TPLHLAAR    E V +LL++GA V A        G T   ++   G+ D 
Sbjct: 50  VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKF----GKTAFDISIDNGNEDL 105

Query: 66  IREL 69
              L
Sbjct: 106 AEIL 109

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 69.8 bits (171), Expect = 4e-14
 Identities = 30/112 (26%), Positives = 39/112 (34%), Gaps = 15/112 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA----------STGGYGCPGSTPLH 55
                 RG T LH+A  +R    V +L++ GA V A            GGY   G  PL 
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLS 145

Query: 56  LAARGGSIDCIRELLAWG---ADRLHRDVSGRIP--YAVALKHKHGACAALL 102
           LAA       +  L   G   AD   +D  G       VA+          +
Sbjct: 146 LAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFV 197

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 6   VNIRDGRGATPLHLAARQR---------RPECVHILLDSGALVCASTGGYGCP---GSTP 53
           +  +D RG T LH                 +   +LL   A +   T         G +P
Sbjct: 169 LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228

Query: 54  LHLAARGGSIDCIRELLAWGAD 75
           L +AA+ G I   + ++     
Sbjct: 229 LMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 17/77 (22%), Positives = 24/77 (31%), Gaps = 10/77 (12%)

Query: 9   RDGRGATPLHLAARQRRP---ECVHILLDSGA-------LVCASTGGYGCPGSTPLHLAA 58
               G T L  A         + + ILLD           + +        G T LH+A 
Sbjct: 42  EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI 101

Query: 59  RGGSIDCIRELLAWGAD 75
                  +  L+  GAD
Sbjct: 102 ERRCKHYVELLVEKGAD 118

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 27/162 (16%), Positives = 39/162 (24%), Gaps = 38/162 (23%)

Query: 15  TPLHLAARQRRPEC----VHILLDSGALVCASTGGYGCPGSTPLHLAA---RGGSIDCIR 67
             L     +  P+     +  LL     +          G T L  A      G  D I 
Sbjct: 7   PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66

Query: 68  ELLAWGADRLH-----------RDVSGRIP--YAVALKHK--------HGA------CAA 100
            LL       +               G+     A+  + K         GA         
Sbjct: 67  ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGR 126

Query: 101 LLNPASAEPLVWP--SPLKFISELNQE--AKALLENALMEAN 138
              P       +    PL   +  NQ      L EN   +A+
Sbjct: 127 FFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD 168

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.8 bits (172), Expect = 4e-14
 Identities = 32/97 (32%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G + LH AA     +   +LL +GA              TPL LAAR GS + 
Sbjct: 150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----EETPLFLAAREGSYET 205

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            + LL   A+R   D   R+P  +A +  H     LL
Sbjct: 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 66.3 bits (163), Expect = 6e-13
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
           A  ++ R   G TPL LAAR      +  L++S A V A        G + LH AA   +
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL----GKSALHWAAAVNN 169

Query: 63  IDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +D    LL  GA++  ++     P   A              H A
Sbjct: 170 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 32/116 (27%), Positives = 44/116 (37%), Gaps = 26/116 (22%)

Query: 6   VNIRDGRGATPLHLAAR-------------QRRPECVHILLDSGALVCASTGGYGCPGST 52
           VN+R   G TPL +A+              +  P  +   +  GA +   T   G    T
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGE---T 59

Query: 53  PLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGAC 98
            LHLAAR    D  + LL   AD   +D  GR P   AV+   +        + A 
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            NI+D  G TPLH A          IL+ + A    +    G    TPL LAAR      
Sbjct: 83  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT---TPLILAARLAVEGM 139

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           + +L+   AD    D  G+    +A A+ +         +GA
Sbjct: 140 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 181

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N  D  G T LHLAAR  R +    LL++ A            G TPLH A    +    
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM----GRTPLHAAVSADAQGVF 106

Query: 67  RELLAWGADRLH-RDVSGRIP--YAVALKHK--------HGA 97
           + L+   A  L  R   G  P   A  L  +          A
Sbjct: 107 QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            ++++ R  TPL LAAR+   E   +LLD  A    +          P  +A      D 
Sbjct: 183 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM----DRLPRDIAQERMHHDI 238

Query: 66  IRELLAWGAD 75
           +R L      
Sbjct: 239 VRLLDLEHHH 248

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.8 bits (172), Expect = 6e-14
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  +  G T LH A      + V  L+++GA +          G  PLH AA  G +D 
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE----GWIPLHAAASCGYLDI 121

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              L++ GA     +  G  P  +A +          
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                  G T LH+AA +   E + +L+ +   V          G TPLH AA  G  + 
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----GWTPLHAAAHWGKEEA 247

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            R L+    D    +  G+  + VA +   G    L 
Sbjct: 248 CRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 14/102 (13%), Positives = 25/102 (24%), Gaps = 15/102 (14%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
          + + D +      L         +   +                       A   G  + 
Sbjct: 1  MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKF-----DDGAVFLAACSSGDTEE 55

Query: 66 IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
          +  LL  GAD  + +V G      A    +         +GA
Sbjct: 56 VLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 33/125 (26%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSG------ALVCASTGGY----------GCP 49
           V   +  G TPL +A  +   E +   ++        A                      
Sbjct: 132 VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191

Query: 50  -------GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHK------ 94
                  G T LH+AA  G  + ++ L+    D   +D  G  P   A     +      
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 95  --HGA 97
             +  
Sbjct: 252 VENLC 256

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.0 bits (123), Expect = 1e-07
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VNI+D  G TPLH AA   + E   IL+++   + A        G T   +A        
Sbjct: 225 VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN----KVGQTAFDVADEDIL-GY 279

Query: 66  IRELLA 71
           + EL  
Sbjct: 280 LEELQK 285

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 65.9 bits (162), Expect = 7e-14
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN     G  PLH AA   + E +  LL  GA + A          TPL  A   G + C
Sbjct: 33  VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH----HITPLLSAVYEGHVSC 88

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           ++ LL+ GAD+  +   G   +        
Sbjct: 89  VKLLLSKGADKTVKGPDGLTAFEATDNQAI 118

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 57.0 bits (139), Expect = 1e-10
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
                  A +    + V   +  G  V  +  G    G  PLH AA  G ++ +  LL  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG----GRKPLHYAADCGQLEILEFLLLK 62

Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALL 102
           GAD    D     P   A+   H +C  LL
Sbjct: 63  GADINAPDKHHITPLLSAVYEGHVSCVKLL 92

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 53.2 bits (129), Expect = 3e-09
 Identities = 14/59 (23%), Positives = 17/59 (28%), Gaps = 4/59 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           +N  D    TPL  A  +    CV +LL  GA            G T            
Sbjct: 66  INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----GLTAFEATDNQAIKA 120

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.4 bits (167), Expect = 8e-14
 Identities = 32/145 (22%), Positives = 45/145 (31%), Gaps = 14/145 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               D    T LH A      E V  LL  G  V          G +PLH+AA  G  + 
Sbjct: 33  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----GWSPLHIAASAGXDEI 88

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQE 125
           ++ LL  GA     + +G  P   A        A +L    A               +  
Sbjct: 89  VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN----------PDAKDHY 138

Query: 126 AKALLENALMEANKEREKNILKGTA 150
               +  A  + N +    +L   A
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKA 163

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 60.3 bits (146), Expect = 6e-11
 Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 8/131 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  +  G TPLH AA + R E   +LL+ GA   A         +T +H AA  G++  
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY----DATAMHRAAAKGNLKM 154

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV----WPSPLKFISE 121
           +  LL + A    +D  G  P  +A   +    A  L    A   +      +PL+    
Sbjct: 155 VHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214

Query: 122 LNQEAKALLEN 132
                   L  
Sbjct: 215 GLGLILKRLAE 225

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
               +LA   +  E    +L   +L   +         T LH A   G  + +  LL  
Sbjct: 7  NIMICNLAYSGKLDELKERILADKSLATRTDQD----SRTALHWACSAGHTEIVEFLLQL 62

Query: 73 GADRLHRDVSGRIP 86
          G     +D +G  P
Sbjct: 63 GVPVNDKDDAGWSP 76

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 68.6 bits (169), Expect = 9e-14
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             +      +PLH AA     +  H+L+ +GA +   +        TPL  AA    ++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSED----QRTPLMEAAENNHLEA 59

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ L+  GA    +D  G     +A K  H      L
Sbjct: 60  VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 68.2 bits (168), Expect = 9e-14
 Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +NIRD      LH AA     +   ILL +   + A        G +PLH+AAR    DC
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH----GDSPLHIAARENRYDC 192

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
           +   L+  +D   ++  G  P   A  +     A  ++ A  
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSID 64
           V+ +D  G+T LHLAA++   E V  LL +G + V     G    G TP+  A     +D
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG----GWTPMIWATEYKHVD 125

Query: 65  CIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            ++ LL+ G+D   RD    I   +A                 
Sbjct: 126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKC 168

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 2e-12
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 14/105 (13%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
              VN +D  G TP+  A   +  + V +LL  G+ +           +  LH AA  G 
Sbjct: 101 QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE----ENICLHWAAFSGC 156

Query: 63  IDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +D    LLA   D    ++ G  P   A                +
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.0 bits (157), Expect = 4e-12
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++  +  G +PLH+AAR+ R +CV + L   + V          G TPL  A+    +  
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKE----GETPLQCASLNSQVWS 225

Query: 66  IRELLAWGAD 75
             ++     D
Sbjct: 226 ALQMSKALQD 235

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 29/107 (27%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA---------STGGYGCPGSTPLHL 56
           +      G T LH+A   +    V  LL  GA V A                 G  PL  
Sbjct: 68  MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127

Query: 57  AARGGSIDCIRELLAWGADRLHRDVSGRIP--YAVALKHKHGACAAL 101
           AA  GS + +R L+  GAD   +D  G       +   +K  AC   
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMY 174

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 7/74 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG----GYGCPGSTPLHLAARGG 61
           V+ R   G T LH+AA     E   +L+++   +           G    T LH+A    
Sbjct: 30  VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQ---TALHIAVINQ 86

Query: 62  SIDCIRELLAWGAD 75
           +++ +R LLA GA 
Sbjct: 87  NVNLVRALLARGAS 100

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECV----HILLDSGALVCASTGGYGCP--GSTPLHLAAR 59
           +  +D  G T LH+   Q          ++LL         +        G TP  LA  
Sbjct: 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGV 206

Query: 60  GGSIDCIRELLAWGAD 75
            G+I   + L+     
Sbjct: 207 EGNIVMFQHLMQKRKH 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 20/101 (19%)

Query: 13 GATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71
            +PL LAA++   + +  LL   G  V    G  G    T LH+AA   +++    L+ 
Sbjct: 3  WESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGE---TALHIAALYDNLEAAMVLME 58

Query: 72 WGADRLH-----RDVSGRIP--YAVALKHK--------HGA 97
             + +          G+     AV  ++          GA
Sbjct: 59 AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN R   G TPLHLAA+    E V +LL  GA V A +      G+TP HLA + G  + 
Sbjct: 35  VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKD----GNTPEHLAKKNGHHEI 90

Query: 66  IRELLAWGADRLHRDVSGRIP 86
           ++ L A GAD   R       
Sbjct: 91  VKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.2 bits (142), Expect = 3e-11
 Identities = 37/101 (36%), Positives = 44/101 (43%), Gaps = 14/101 (13%)

Query: 7  NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
                G TPLH AA+    E V  LL  GA V A +      G+TPLHLAA+ G  + +
Sbjct: 3  MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----GNTPLHLAAKNGHAEIV 58

Query: 67 RELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
          + LLA GAD   R   G  P   A    H          GA
Sbjct: 59 KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 9e-07
 Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 4/50 (8%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLH 55
           VN R   G TP HLA +    E V +L   GA V A + G     S   H
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG----SSHHHH 113

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 30/102 (29%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 9   RDGRGATPLHLAARQRRPECVHI---LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                 T LHLA R      +HI   L+ +   +   TG     GST LH      + +C
Sbjct: 165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAEC 220

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASA 107
           ++ LL   A     + SG  P  +A + KH  C  LL  A +
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 8e-09
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++ + G+G+T LH        EC+ +LL   A +  +       G TPL +A R     C
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----GETPLDIAKRLKHEHC 253

Query: 66  IRELL 70
              L 
Sbjct: 254 EELLT 258

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 4/85 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V          +  AA   + E + +L +    V  S       G+       +  +   
Sbjct: 283 VLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNT----GAGGAVKRKKKAAPAV 338

Query: 66  IRELLAWGADRLHRDVSGRIPYAVA 90
            R  LA  A    R  S     AV+
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.4 bits (168), Expect = 2e-13
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++  + +G + LH A      +     ++ G  V           + PL+L+ R   +  
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNE----HTVPLYLSVRAAMVLL 259

Query: 66  IRELLAWGADR-------------LHRDVSGRIPYAVALKHKHGACAALL 102
            +ELL                   L   V        A          LL
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLL 309

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 9e-13
 Identities = 21/120 (17%), Positives = 36/120 (30%), Gaps = 29/120 (24%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             I++  G T LHLA +    +    L   G +           G  P+HLA      D 
Sbjct: 46  PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH------GQKPIHLAVMANKTDL 99

Query: 66  IRELLAWGADR----LH-----------------RDVSGRIP--YAVALKHKHGACAALL 102
           +  L+    +R                       +   G+    + V L  ++     +L
Sbjct: 100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL 159

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 6/97 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               D      +H+AAR+ + + V  L+++G             G T LHLA + G +D 
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF----GCTALHLACKFGCVDT 68

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            + L + G    H    G+ P  +A+          L
Sbjct: 69  AKYLASVGEV--HSLWHGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDS-----GALVCASTGGYGCPGSTPLHLAARG 60
              +D    TPL  A   R  E + +++D+        +  +       G++ LH A   
Sbjct: 166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----GNSHLHWAILI 221

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              D     +  G D    D    +P  ++++         L
Sbjct: 222 NWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 16/106 (15%), Positives = 28/106 (26%), Gaps = 9/106 (8%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGY---------GCPGSTPLHL 56
           VN+ D     PL+L+ R         LL    +       Y                +  
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPA 296

Query: 57  AARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           AA     + ++ L     + +    +G        K    A   + 
Sbjct: 297 AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 14/105 (13%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
           A  ++ R   G TPL LAAR      +  L++S A V A        G + LH AA   +
Sbjct: 82  ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL----GKSALHWAAAVNN 137

Query: 63  IDCIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +D    LL  GA++  ++     P   A              H A
Sbjct: 138 VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFA 182

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 1e-12
 Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 13/102 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            NI+D  G TPLH A          IL+ + A    +    G    TPL LAAR      
Sbjct: 51  ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT---TPLILAARLAVEGM 107

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           + +L+   AD    D  G+    +A A+ +         +GA
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA 149

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.4 bits (158), Expect = 2e-12
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G + LH AA     +   +LL +GA              TPL LAAR GS + 
Sbjct: 118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----EETPLFLAAREGSYET 173

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            + LL   A+R   D   R+P   A    H         +  
Sbjct: 174 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 29/102 (28%), Positives = 36/102 (35%), Gaps = 15/102 (14%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
           N  D  G T LHLAAR  R +    LL++ A            G TPLH A    +    
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNM----GRTPLHAAVSADAQGVF 74

Query: 67  RELLAWGADRLH-RDVSGRIP--YAVALKHK--------HGA 97
           + L+   A  L  R   G  P   A  L  +          A
Sbjct: 75  QILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 116

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 5e-11
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            ++++ R  TPL LAAR+   E   +LLD  A    +          P  +A      D 
Sbjct: 151 KDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHM----DRLPRDIAQERMHHDI 206

Query: 66  IRELLAWGADR---LH 78
           +R L  +   R   LH
Sbjct: 207 VRLLDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 48.6 bits (117), Expect = 5e-07
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)

Query: 26 PECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI 85
          P  +   +  GA +   T   G    T LHLAAR    D  + LL   AD   +D  GR 
Sbjct: 4  PAVISDFIYQGASLHNQTDRTGE---TALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60

Query: 86 P--YAVALKHK--------HGA 97
          P   AV+   +        + A
Sbjct: 61 PLHAAVSADAQGVFQILIRNRA 82

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.9 bits (157), Expect = 4e-13
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEV 83

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           ++ LL  GAD   +D +GR P  +A ++ H     LL
Sbjct: 84  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ 
Sbjct: 61  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEV 116

Query: 66  IRELLAWGA 74
           ++ LL  GA
Sbjct: 117 VKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.5 bits (143), Expect = 4e-11
 Identities = 40/95 (42%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
          G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ ++ LL  
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVVKLLLEA 57

Query: 73 GADRLHRDVSGRIP--YAVALKHK--------HGA 97
          GAD   +D +GR P   A    H          GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 66.1 bits (162), Expect = 6e-13
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 7/100 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            ++ +  G T LH A      E V  L+  G  V A+       G TPLH AA   ++  
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD----GWTPLHCAASCNNVQV 118

Query: 66  IRELLAWGAD---RLHRDVSGRIPYAVALKHKHGACAALL 102
            + L+  GA      + D+         ++  +  C+  L
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 20/91 (21%), Positives = 26/91 (28%), Gaps = 1/91 (1%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLH AA     +    L++SGA V A T       +         G   C
Sbjct: 96  VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY-SDMQTAADKCEEMEEGYTQC 154

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHG 96
            + L          +                
Sbjct: 155 SQFLYGVQEKMGIMNKGVIYALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 60.3 bits (147), Expect = 7e-11
 Identities = 14/98 (14%), Positives = 25/98 (25%), Gaps = 15/98 (15%)

Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
          +  G   L    R    +     +  G  V  +           L  ++  G  D ++ +
Sbjct: 2  EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPL-----ALLLDSSLEGEFDLVQRI 56

Query: 70 LAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
          +    D    +  G      AV   H          G 
Sbjct: 57 IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV 94

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 11/88 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +   D + A        +   +C   L      +     G        L           
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG----VIYALWDYEPQNDD-- 185

Query: 66  IRELLAWGADR---LHRDVSGRIPYAVA 90
             EL     D    +HR+    I +  A
Sbjct: 186 --ELPMKEGDCMTIIHREDEDEIEWWWA 211

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 9e-13
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           ++  D + G +PL  A        V +LL  GA V A        GS+ LH A+  G + 
Sbjct: 142 IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS----GSSALHSASGRGLLP 197

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            +R L+  GAD   ++     P  VA   +        
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 34/106 (32%), Positives = 42/106 (39%), Gaps = 17/106 (16%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCA---STGGYGCPGSTPLHLAARGGS 62
               D  G T  HLA   R P C+  LLDS A       +    G    T LH+A     
Sbjct: 72  PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL---TALHVAVNTEC 128

Query: 63  IDCIRELLAWGADRLHRDV-SGRIP--YAVALKHK--------HGA 97
            + ++ LL  GAD    D+ SGR P  +AV             HGA
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGA 174

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +   G++ LH A+ +     V  L+ SGA          C   TPL +A     ID 
Sbjct: 176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN----CHNDTPLMVARSRRVIDI 231

Query: 66  IRELLAWGA 74
           +R      A
Sbjct: 232 LRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.5 bits (148), Expect = 6e-11
 Identities = 28/97 (28%), Positives = 38/97 (39%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               D  G TPLH+A  Q     VH L++           Y     TPLHLA        
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +R L+  GA  +  D  G+    +A +H+   C   L
Sbjct: 62  VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.6 bits (151), Expect = 1e-12
 Identities = 34/69 (49%), Positives = 42/69 (60%), Gaps = 4/69 (5%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
          VN +D  G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ 
Sbjct: 28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEV 83

Query: 66 IRELLAWGA 74
          ++ LL  GA
Sbjct: 84 VKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 57.0 bits (139), Expect = 5e-11
 Identities = 40/95 (42%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
          G TPLHLAAR    E V +LL++GA V A        G TPLHLAAR G ++ ++ LL  
Sbjct: 2  GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----GRTPLHLAARNGHLEVVKLLLEA 57

Query: 73 GADRLHRDVSGRIP--YAVALKHK--------HGA 97
          GAD   +D +GR P   A    H          GA
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 32/53 (60%)

Query: 50  GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           G TPLHLAAR G ++ ++ LL  GAD   +D +GR P  +A ++ H     LL
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.5 bits (156), Expect = 1e-12
 Identities = 36/97 (37%), Positives = 51/97 (52%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPL LAA     E V +LL +GA V A+       G TPLHLAA  G ++ 
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----GHTPLHLAAMFGHLEI 128

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 39/102 (38%), Positives = 46/102 (45%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A        G TPL LAA  G ++ 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA----GMTPLRLAALFGHLEI 95

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +  LL  GAD    D+ G  P   A    H         +GA
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 59.3 bits (145), Expect = 5e-11
 Identities = 34/103 (33%), Positives = 43/103 (41%), Gaps = 15/103 (14%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            +   G      L  AAR  R + V IL+ +GA V A        G TPLHLAA  G ++
Sbjct: 6   HHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDAS----GWTPLHLAAFNGHLE 61

Query: 65  CIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            +  LL  GAD    D +G  P   A    H         +GA
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 53.1 bits (129), Expect = 7e-09
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E V +LL +GA V A        G T   ++   G+ D 
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF----GKTAFDISIDNGNEDL 161

Query: 66  IRELL 70
              L 
Sbjct: 162 AEILQ 166

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.2 bits (155), Expect = 2e-12
 Identities = 33/102 (32%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               +GR +TPLH AA   R   V  LL  GA V A   G    G  PLH A   G  + 
Sbjct: 35  CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG----GLVPLHNACSYGHYEV 90

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
              L+  GA     D+    P   A A            HGA
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.6 bits (151), Expect = 6e-12
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 13/101 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V+ +D  G  PLH A      E   +L+  GA+V  +         TPLH AA  G  + 
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----KFTPLHEAAAKGKYEI 123

Query: 66  IRELLAWGADRLHRDVSGRIP-YAVALKHK--------HGA 97
            + LL  GAD   ++  G  P   V               A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.5 bits (135), Expect = 1e-09
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 13/98 (13%)

Query: 10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
          +      L  AA+    E V  L    ++ C    G      TPLH AA    +  +  L
Sbjct: 5  NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS---TPLHFAAGYNRVSVVEYL 61

Query: 70 LAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
          L  GAD   +D  G +P   A +  H         HGA
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 63.5 bits (155), Expect = 2e-12
 Identities = 14/110 (12%), Positives = 25/110 (22%), Gaps = 17/110 (15%)

Query: 6   VNIRDGRGATPLHLAARQ------RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAAR 59
           +  R   G T      +          E   I L+ GA + A            +     
Sbjct: 68  IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP----YKIVVFKNIF 123

Query: 60  GGSIDCIRE-------LLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              +D               G   L +D  G        + +      ++
Sbjct: 124 NYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.5 bits (142), Expect = 1e-10
 Identities = 5/77 (6%), Positives = 14/77 (18%), Gaps = 11/77 (14%)

Query: 6   VNIRDGRGATPLHLAAR------QRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAA 58
           +          +                   ++    G  +          G T L    
Sbjct: 107 ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW----GLTALEFVK 162

Query: 59  RGGSIDCIRELLAWGAD 75
           R      ++ +  +   
Sbjct: 163 RCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 16/102 (15%), Positives = 32/102 (31%), Gaps = 10/102 (9%)

Query: 7   NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID-- 64
            ++       L     + R +    L++ GA + + T      G+T      +GG  D  
Sbjct: 36  VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKE----GTTLFFPLFQGGGNDIT 91

Query: 65  ----CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
                 +  L  GAD        +I     + +       ++
Sbjct: 92  GTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMI 133

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 1/81 (1%)

Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
            +  AA     E    L + G     S           L              L+  GA
Sbjct: 8  RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSN-ILYDVLRNNNDEARYKISMFLINKGA 66

Query: 75 DRLHRDVSGRIPYAVALKHKH 95
          D   R   G   +    +   
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGG 87

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 25/100 (25%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +  +  G T LH A        V  L+ +GA V +        G TPLH AA       
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSH----GWTPLHCAASCNDTVI 102

Query: 66  IRELLAWGADRLHRDVS-GRIP--YAVALKHKHGACAALL 102
              L+  GA      +S G          +  +  CA  L
Sbjct: 103 CMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 8e-12
 Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA--RGGSI 63
           VN  D  G TPLH AA          L+  GA + A+T      G+T        R G  
Sbjct: 80  VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSD---GATAFEKCDPYREGYA 136

Query: 64  DCIRELLAWGADRLHRDVSGRIP-------YAVALKHKHGACA 99
           DC   L          +             +   L  + G   
Sbjct: 137 DCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 179

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 14/96 (14%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
               L  AA     E V   +                G T LH A  G +   +  L+  
Sbjct: 21  PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----GITALHNAICGANYSIVDFLITA 76

Query: 73  GADRLHRDVSGRIP--YAVALKHK--------HGAC 98
           GA+    D  G  P   A +            HGA 
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 11/79 (13%)

Query: 29 VHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP-- 86
          +  +L        +           L  AA  G ++ +++ +    D    +  G     
Sbjct: 1  MRSVLRKAGSPRKARR-ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 59

Query: 87 YAVALKHK--------HGA 97
           A+   +          GA
Sbjct: 60 NAICGANYSIVDFLITAGA 78

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 13/104 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +  +D  G  PLH +   +  E    LL     V          G TP H+A   G+++ 
Sbjct: 29  LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-GWTPFHIACSVGNLEV 87

Query: 66  IRELL--AWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           ++ L       D       G      AV  K          +GA
Sbjct: 88  VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N    +G T LHLA  ++  E    L+++GA V             PLH AA  GS+  
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF----NQIPLHRAASVGSLKL 155

Query: 66  IRELLAWGADRLH-RDVSGRIPYAVALKHKHGACAALL 102
           I  L   G   ++ +D  G  P   AL   HG  A LL
Sbjct: 156 IELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 13 GATPLHLAARQ-RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71
             PLH A  +    +   +L    +L+          G  PLH +    + +    LL+
Sbjct: 2  SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQD----GRIPLHWSVSFQAHEITSFLLS 57

Query: 72 WGAD---RLHRDVSGRIP--YAVALKHK 94
             +     + D SG  P   A ++ + 
Sbjct: 58 KMENVNLDDYPDDSGWTPFHIACSVGNL 85

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN +D +G TPL  A  +   +   +L++  GA            G+    +A       
Sbjct: 167 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK----GAKAEDVALNEQ--- 219

Query: 65  CIRELL 70
            +++  
Sbjct: 220 -VKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 50 GSTPLHLAARGGSIDCIRELL-AWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           + PLH A        ++ELL +  +  L +D  GRIP  ++V+ +             
Sbjct: 2  SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 49.1 bits (117), Expect = 7e-07
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++ +   G T LH AA   +P+C+ +LL   ALV          G T L +A +    +C
Sbjct: 200 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----GETALDIARKKHHKEC 255

Query: 66  IREL 69
              L
Sbjct: 256 EELL 259

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.6 bits (151), Expect = 7e-12
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +++D  G   +H AAR    + +  LL+  A V          G+ PLHLAA+ G +  
Sbjct: 63  PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----GNLPLHLAAKEGHLRV 118

Query: 66  IRELLAWGADRL-HRDVSGRIPYAVALKHKHGACAALL 102
           +  L+   A  + HR+  G     +A  +      +L+
Sbjct: 119 VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN ++G G T L +      PE    LL  GA            G   +H AAR G +D 
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT----GFAVIHDAARAGFLDT 85

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           ++ LL + AD    D  G +P   A    H         H A
Sbjct: 86  LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 55.9 bits (136), Expect = 6e-10
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VNI D  G  PLHLAA++     V  L+   A         G    T   LA   G  + 
Sbjct: 96  VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD---TACDLARLYGRNEV 152

Query: 66  IRELLAWGA 74
           +  + A GA
Sbjct: 153 VSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.8 bits (128), Expect = 8e-09
 Identities = 22/96 (22%), Positives = 31/96 (32%), Gaps = 15/96 (15%)

Query: 12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA 71
               L  AA +   E +  LL +   V A  G     G T L +    G+ +  R LL 
Sbjct: 4  PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----GRTALQVMKL-GNPEIARRLLL 58

Query: 72 WGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           GA+   +D +G      A                A
Sbjct: 59 RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA 37
           A  V  R+ +G T   LA    R E V ++  +GA
Sbjct: 127 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 63.6 bits (156), Expect = 7e-12
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
             +R   GATP  LAA     + + + L  GA V          G T    AA  G +  
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFY----GFTAFMEAAVYGKVKA 120

Query: 66  IRELLAWGAD 75
           ++ L   GA+
Sbjct: 121 LKFLYKRGAN 130

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
              L  A +    + V  LL+ GA V       G    TPLH A +    D +  LL  
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW---TPLHNAVQMSREDIVELLLRH 61

Query: 73 GADRLHRDVSGRIP--YAVALKHK--------HGA 97
          GAD + R  +G  P   A               GA
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGA 96

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.6 bits (143), Expect = 3e-10
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 5/71 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN+R  RG TPL LA  ++    V  LL+     +  +       G T L LA       
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----GKTALLLAVELKLKK 267

Query: 65  CIRELLAWGAD 75
               L   GA 
Sbjct: 268 IAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 30/100 (30%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLD-SGALVCASTGGYGCPGSTPLHLAARG 60
                      GAT L  AA +   E + ILLD  GA V A        G   L  A   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNM----GRNALIHALLS 192

Query: 61  GSIDCIRE----LLAWGADRLHRDVSGRIP--YAVALKHK 94
                +      LL  GAD   R   G+ P   AV  KH 
Sbjct: 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHL 232

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 63.5 bits (154), Expect = 9e-12
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 7/116 (6%)

Query: 13  GATPLHLAARQRRPECVHI---LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
               LHLA +      + +   ++ +G  + A        G+T LH AA     DC++ L
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----GNTALHYAALYNQPDCLKLL 245

Query: 70  LAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQE 125
           L   A     + +G     +A K  H  C  LL  A A    +P  + +   ++ E
Sbjct: 246 LKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVISTE 301

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.5 bits (128), Expect = 2e-08
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           ++ +   G T LH AA   +P+C+ +LL   ALV          G T L +A +    +C
Sbjct: 219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----GETALDIARKKHHKEC 274

Query: 66  IRELL 70
             ELL
Sbjct: 275 E-ELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 5/76 (6%)

Query: 32  LLDSGALVCASTGGYGC--PGSTPLHLAARGGSIDC--IRELLAW-GADRLHRDVSGRIP 86
              +G        G     P    LHLA +  +     + + +   G     +   G   
Sbjct: 170 AFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 229

Query: 87  YAVALKHKHGACAALL 102
              A  +    C  LL
Sbjct: 230 LHYAALYNQPDCLKLL 245

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.9 bits (149), Expect = 9e-12
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            + R     TPLH+AA +     V +LL  GA V A          T LH A      + 
Sbjct: 60  RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----KMTALHWATEHNHQEV 115

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +  L+ +GAD   +    +  + +++ + +   A +L
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.5 bits (148), Expect = 1e-11
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 15/95 (15%)

Query: 13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
              L  AAR  + + V IL+ +GA       G      +PLHLAA+ G       LL  
Sbjct: 2  LGKKLLEAARAGQDDEVRILMANGAPFTTDWLGT-----SPLHLAAQYGHFSTTEVLLRA 56

Query: 73 GADRLHRDVSGRIP--YAVALKHK--------HGA 97
          G  R  R    R P   A +  H         HGA
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGA 91

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 14/98 (14%)

Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
           D  G +PLHLAA+        +LL +G    A T        TPLH+AA  G  + +  L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV----DRTPLHMAASEGHANIVEVL 86

Query: 70  LAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           L  GAD   +D+       +A    H+        +GA
Sbjct: 87  LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 59.3 bits (145), Expect = 3e-11
 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPL+LA      E V +LL +GA V A        G TPLHLAA  G ++ 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI----GFTPLHLAAFIGHLEI 95

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
              LL  GAD   +D  G+  + +++ + +   A +L
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.1 bits (134), Expect = 8e-10
 Identities = 32/103 (31%), Positives = 42/103 (40%), Gaps = 15/103 (14%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            +   G      L  AAR  + + V IL+ +GA V A        G TPL+LA   G ++
Sbjct: 6   HHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEY----GLTPLYLATAHGHLE 61

Query: 65  CIRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
            +  LL  GAD    D  G  P   A  + H         HGA
Sbjct: 62  IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 52.0 bits (126), Expect = 1e-08
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G TPLHLAA     E   +LL  GA V A        G T   ++   G+ D 
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF----GKTAFDISIGNGNEDL 128

Query: 66  IRELL 70
              L 
Sbjct: 129 AEILQ 133

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 5e-11
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 6  VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
          V+  D  G TPL++A      E    L+D GA +            +P   A   G  + 
Sbjct: 32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI----SDSPYLYAGAQGRTEI 87

Query: 66 IRELLAWGA 74
          +  +L    
Sbjct: 88 LAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%)

Query: 8   IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIR 67
           ++       L  A ++   +   IL D+   V          G+TPL++A     I+  +
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE----GNTPLNIAVHNNDIEIAK 56

Query: 68  ELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            L+  GAD   ++     PY  A         A +
Sbjct: 57  ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 10/103 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSG-ALVCASTGGYGCPGSTPLHLAA-----R 59
           +N  +  G   L  AA +   + V +LL+ G   +          G T L  A       
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF----GYTALIEAVGLREGN 154

Query: 60  GGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
               D ++ L+  GAD+  +D SGR     A +  +   + +L
Sbjct: 155 QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 48.2 bits (116), Expect = 5e-07
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 9/70 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRP-----ECVHILLDSGALVCASTGGYGCPGSTPLHLAARG 60
           ++ ++  G T L  A   R       + V +L+++GA            G T +  A + 
Sbjct: 133 IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS----GRTAMDYANQK 188

Query: 61  GSIDCIRELL 70
           G  +  + L 
Sbjct: 189 GYTEISKILA 198

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.3 bits (145), Expect = 8e-11
 Identities = 25/102 (24%), Positives = 35/102 (34%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +  +D  G+T L  A +  R      LL  G+ V          G TPL  +   G  + 
Sbjct: 61  LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFS----GKTPLMWSIIFGYSEM 116

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
              LL  GA+   R++ G  P   A               GA
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N RD    TPL +A        +  L+++   +          GST L  A +   +  
Sbjct: 28  RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE----GSTALIWAVKNNRLGI 83

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
             +LL+ G++   +D SG+ P  +++   +         HGA
Sbjct: 84  AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 58.2 bits (142), Expect = 2e-10
 Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 4/97 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN +D  G TPL  +      E  + LL+ GA V          G TPL +A++ G  + 
Sbjct: 94  VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----GETPLIVASKYGRSEI 149

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           +++LL  GAD   RD++G    A A          + 
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.2 bits (124), Expect = 5e-08
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN R+  G TPL +A++  R E V  LL+ GA + A        G T    A   G  + 
Sbjct: 127 VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLT----GLTAEASARIFGRQEV 182

Query: 66  IRELL 70
           I+   
Sbjct: 183 IKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.4 bits (114), Expect = 9e-07
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 7  NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCI 66
          +  D  G     +   +   + +  L +           Y     TPL +A   G  + I
Sbjct: 2  SHMDKNGEIVEKIKDEKSINQNLDFLRN-------YRDSYNR---TPLMVACMLGMENAI 51

Query: 67 RELLAWGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +L+        +D+ G     +AV              G+
Sbjct: 52 DKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 9/94 (9%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D    TPL LA   RR   V  L+ +GA              + LH AA       
Sbjct: 159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKS----ERSALHQAAANRDFGM 214

Query: 66  IRELL---AWGADRLHRDVSGRIP--YAVALKHK 94
           +  +L       D    D +G          + +
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR 248

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            + +D  G TP+ LAA++ R E V  L+  GA V A          T   LA      + 
Sbjct: 306 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT----DHTARQLAQANNHHNI 361

Query: 66  IRELLAWGADR 76
           +        +R
Sbjct: 362 VDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 5e-10
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 18/110 (16%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHI---LLDSGALVCASTGGYGCP----GSTPLHLAA 58
           +   D  G T L + A     + V     L++ GA V              G T LH AA
Sbjct: 228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287

Query: 59  RGGSIDCIRELLA-WGADRLHRDVSGRIP--YAVALKHK--------HGA 97
           +  ++  ++ L+   G+++  +D  G+ P   A               GA
Sbjct: 288 QVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 337

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 56.5 bits (137), Expect = 3e-09
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILL-DSGALVCASTGGYGCPGSTPLHLAARGGSID 64
            +    +G T LH AA+      V  L+ + G+            G TP+ LAA+ G I+
Sbjct: 272 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----GKTPIMLAAQEGRIE 327

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
            +  L+  GA     D +      +A  + H     + 
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.0 bits (133), Expect = 8e-09
 Identities = 18/110 (16%), Positives = 26/110 (23%), Gaps = 24/110 (21%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
               +      LH  A          +      +            T LH  A   S + 
Sbjct: 87  PTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPRHNR-----TVLHWIASNSSAEK 140

Query: 66  IRELLAW--------GADRLHRDVSGRIP--YAVALKHK--------HGA 97
             +L+          GAD    D     P   AV  + +         GA
Sbjct: 141 SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 8/91 (8%), Positives = 15/91 (16%), Gaps = 8/91 (8%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N        P                  +  +               LH  A  GS   
Sbjct: 54  RNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPE----SPIKLHTEAA-GSYAI 108

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKHK 94
              +     + +      R    +  +    
Sbjct: 109 TEPITRESVN-IIDPRHNRTVLHWIASNSSA 138

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 12/83 (14%), Positives = 20/83 (24%), Gaps = 2/83 (2%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V +          LAA       ++ L +       +             LAA  G +  
Sbjct: 121 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--NYHAFRLAAENGHLHV 178

Query: 66  IRELLAWGADRLHRDVSGRIPYA 88
           +  L           +     YA
Sbjct: 179 LNRLCELAPTEATAMIQAENYYA 201

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 5e-07
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 8/66 (12%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                G     L LA R        +LL   +++  +        +   ++   GG +D 
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK-------ANNYYINETGGRLD- 363

Query: 66  IRELLA 71
           +R +  
Sbjct: 364 LRAVAL 369

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 19/99 (19%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-------GSTPLHLAARGGSIDC 65
           G   L    R+     +  +     L+         P        +  L LA R G+   
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIR---FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334

Query: 66  IRELLAWGADR-------LHR-DVSGRIPYA-VALKHKH 95
              LL+  +          +  +  GR+    VAL+H H
Sbjct: 335 CALLLSIPSVLALTKANNYYINETGGRLDLRAVALEHHH 373

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
               ATPL  A           LL +GA V  +       G  PLH A   G        
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQADS----AGRGPLHHATILGHTGLACLF 287

Query: 70  LAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
           L  GAD   RD  GR P  +A++  +     LL
Sbjct: 288 LKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 49.0 bits (116), Expect = 6e-07
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN  D  G  PLH A          + L  GA + A        G  PL +A    + D 
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE----GRDPLTIAMETANADI 316

Query: 66  IRELL 70
           +  L 
Sbjct: 317 VTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.8 bits (100), Expect = 7e-05
 Identities = 34/137 (24%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           GA     +        +   L  GA V    GG     +TPL  A    S+     LL  
Sbjct: 200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQ--DNATPLIQATAANSLLACEFLLQN 257

Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWP----SPLKFISEL-NQEAK 127
           GA+    D +GR P   A    H   A L     A+          PL    E  N +  
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

Query: 128 ALLENALMEANKEREKN 144
            LL  A M   +  +  
Sbjct: 318 TLLRLAKMREAEAAQGQ 334

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 55.4 bits (133), Expect = 5e-09
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 4/54 (7%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAA 58
            +N +D  G T L++AAR      V  LLD GA    +       G  P+   A
Sbjct: 275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS----GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 2/86 (2%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
                              R + +   LD   ++          G T L++AAR G+I  
Sbjct: 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISI 298

Query: 66  IRELLAWGADRLHRDVSGRIP--YAV 89
           +  LL +GAD    + SG  P  +  
Sbjct: 299 VDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 7   NIRDGRGATPL-HLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           N   G       H++      E      ++   +      +G    TPLH      +++ 
Sbjct: 90  NSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN---TPLHWLTSIANLEL 146

Query: 66  IRELLAWGADRLHRDVSGRIP--YAVALKH--KHGACAALL 102
           ++ L+  G++RL+ D  G      AV   +    G   ALL
Sbjct: 147 VKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL 187

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 15/113 (13%), Positives = 22/113 (19%), Gaps = 10/113 (8%)

Query: 6   VNIRDGRGATPLHLAARQR---RPECVHILLDSGALVCASTGGYGCPGSTPLHLAA---- 58
               D  G + L  A +            LLD                 T LH       
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNR---TILHHIIITSG 213

Query: 59  RGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLV 111
             G     +  L      + +  +  I      K             S    +
Sbjct: 214 MTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENL 266

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 124 QEAKALLE-----NALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTEL-CC 177
           QE  AL+E         EA  + +   L+ T                ++++  + EL C 
Sbjct: 9   QEHWALMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCI 68

Query: 178 ICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
           IC E        +C H  C+ C +      K            CP CR  I
Sbjct: 69  ICSEYFIEAVTLNCAHSFCSYC-INEWMKRKIE----------CPICRKDI 108

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 46.3 bits (109), Expect = 5e-06
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)

Query: 164 DDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF 223
           +      S  +LC IC E    ++++ CGH MC  C L     ++            CPF
Sbjct: 323 ELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSC-LTSWQESEGQG---------CPF 372

Query: 224 CRSTIAHLVVVKIEN 238
           CR  I     + ++ 
Sbjct: 373 CRCEIKGTEPIVVDP 387

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 152 SLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPN 210
                   ++  ++ +    + +LC IC ++   I    CGH   C QC  A+       
Sbjct: 4   GSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------- 56

Query: 211 PTTACLTPPVCPFCRSTIAHLV 232
                     CP C + I    
Sbjct: 57  --------DKCPMCYTVITFKQ 70

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query: 163 ADDNISEASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVC 221
             + + +  +  LC +C E+        CGH   C  C   L                 C
Sbjct: 8   LQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSC 52

Query: 222 PFCRSTIAHLVVV 234
           P CRS + H+  V
Sbjct: 53  PVCRSRVEHVQHV 65

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 11/77 (14%), Positives = 20/77 (25%), Gaps = 16/77 (20%)

Query: 162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPV 220
           G+        +++ C +C        +  C H  +C  C                     
Sbjct: 4   GSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQ 48

Query: 221 CPFCRSTIAHLVVVKIE 237
           CP CR  +     +   
Sbjct: 49  CPMCRQFVQESFALSGP 65

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 36.7 bits (85), Expect = 5e-04
 Identities = 12/68 (17%), Positives = 20/68 (29%), Gaps = 14/68 (20%)

Query: 168 SEASDTELCCICFEQV--CTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFC 224
              +  + C +C ++     I     GH   C  C   L                 CP C
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGAS-----------CPIC 50

Query: 225 RSTIAHLV 232
           +  I  ++
Sbjct: 51  KKEIQLVI 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	298
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.92
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.91
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.91
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.91
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.91
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.9
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.9
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.89
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.89
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.89
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.89
2pnn_A	273	Transient receptor potential cation channel subfa	99.89
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.88
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.88
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.88
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.88
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.88
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.87
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.87
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.87
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.86
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.82
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.82
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.81
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.75
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.69
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.76
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.74
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.59
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.59
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.58
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.57
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.55
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.44
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.4
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.4
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.4
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.38
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.38
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.37
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.34
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.32
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.32
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.31
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.31
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.31
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.3
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.29
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.28
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.28
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.28
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.27
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.27
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.26
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	98.26
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.25
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.24
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.23
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.18
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.17
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.16
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.14
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.13
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.11
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.11
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.09
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.06
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.04
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.03
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.03
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.02
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	97.95
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.94
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	97.92
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.92
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.9
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	97.87
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	97.85
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	97.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.66
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.65
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.58
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	97.53
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	97.46
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	97.36
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	97.35
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.33
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.16
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.54
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.43
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	95.19
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	94.42
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	94.16
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	93.74
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	83.01
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	81.65

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=5.3e-30  Score=208.50  Aligned_cols=134  Identities=33%  Similarity=0.426  Sum_probs=126.8

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|..|+||||+|+..++.+++++|+++|++++.++.    .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus        26 ~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~----~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~  101 (169)
T 4gpm_A           26 NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDS  101 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhcc----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC
Confidence            4789999999999999999999999999999999999999887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|+||||+|+..|+.+++++|+++|++          ++..|.+|+|||++|+..++.+++++|++.+
T Consensus       102 ~G~TpLh~A~~~g~~~~v~~Ll~~gad----------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A          102 DGRTPLHHAAENGHKEVVKLLISKGAD----------VNTSDSDGRTPLDLAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999          4567888999999999999999999887754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=6.3e-28  Score=188.61  Aligned_cols=131  Identities=20%  Similarity=0.176  Sum_probs=123.5

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.++|.+|..|.||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~   76 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR----FGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA   76 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC----CCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC
Confidence            468999999999999999999999999999999999998887    89999999999 9999999999999999999999


Q ss_pred             -CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           83 -GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        83 -g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                       |.||||+|+..++.+++++|+++|+++          +..+..|.|||++|+..++.+++++|++.
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGARL----------DVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCCC----------CCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence             999999999999999999999999984          55677899999999999999999988764

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=2.5e-26  Score=186.01  Aligned_cols=133  Identities=32%  Similarity=0.367  Sum_probs=122.2

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  111 (169)
T 2y1l_E           36 NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----AGMTPLRLAALFGHLEIVEVLLKNGADVNANDM  111 (169)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            4678999999999999999999999999999999999988877    799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      .|.||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++-
T Consensus       112 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          112 EGHTPLHLAAMFGHLEIVEVLLKNGAD----------VNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            999999999999999999999999998          455677889999999999999999988763

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=4e-27  Score=184.06  Aligned_cols=132  Identities=23%  Similarity=0.147  Sum_probs=118.7

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      |.|+ .+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~   75 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ   75 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC
Confidence            4566 7899999999999999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      |.||||+|+..++.+++++|+++|++          ++..|..|.|||++|...+..++++++.+..
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLSYGAS----------RNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence            99999999999999999999999998          4667889999999999999988888776654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=5.9e-27  Score=203.83  Aligned_cols=209  Identities=19%  Similarity=0.162  Sum_probs=165.8

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCC---ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGAL---VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~---~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      ++.+|..|+||||+|+..|+.++|++|+++|++   ++..+.    .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~   77 (282)
T 1oy3_D            2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND----LGQTALHLAAILGEASTVEKLYAAGAGVLVAERG   77 (282)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Confidence            688999999999999999999999999999988   666665    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCC-------------------------------------hhhhhHhhHH
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSP-------------------------------------LKFISELNQE  125 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~-------------------------------------~~~~~~~~~~  125 (298)
                      |+||||+|+..++.+++++|++++++.......                                     ...++..+..
T Consensus        78 g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (282)
T 1oy3_D           78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYD  157 (282)
T ss_dssp             SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTT
T ss_pred             CCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCC
Confidence            999999999999999999999998764322110                                     1124456778


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhc-CCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHh
Q 041054          126 AKALLENALMEANKEREKNILK-GTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALC  204 (298)
Q Consensus       126 ~~t~L~~A~~~~~~~~~~~ll~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~  204 (298)
                      |.||||+|+..++.+++++|++ ++++......  .           +...-.+...         .||..++..++..+
T Consensus       158 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~-----------g~tpL~~A~~---------~~~~~~v~~Ll~~g  215 (282)
T 1oy3_D          158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT--C-----------GRTPLHLAVE---------AQAASVLELLLKAG  215 (282)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT--T-----------CCCHHHHHHH---------TTCHHHHHHHHHTT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC--C-----------CcCHHHHHHH---------cCCHHHHHHHHHcC
Confidence            9999999999999999888876 4443321110  0           0111111111         37888999999998


Q ss_pred             hcCCCCCCCC-CCCCCCCcccccccceeEEEEeecCC
Q 041054          205 CHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIENQE  240 (298)
Q Consensus       205 ~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~~~  240 (298)
                      +..+..+..+ ||++.++...+..|+++++......+
T Consensus       216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  252 (282)
T 1oy3_D          216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP  252 (282)
T ss_dssp             CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC
T ss_pred             CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC
Confidence            8877766666 99999999999999999987644433

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=4.6e-26  Score=183.74  Aligned_cols=132  Identities=25%  Similarity=0.297  Sum_probs=124.7

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.++|.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..
T Consensus        26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  101 (167)
T 3v31_A           26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN  101 (167)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC
Confidence            578999999999999999999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      |.||||+|+..++.+++++|+++|+++          +..+..|.|||++|+..++.+++++|++.
T Consensus       102 g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          102 GGTPLLYAVHGNHVKCVKMLLESGADP----------TIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            999999999999999999999999984          55678899999999999999999988764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.9e-26  Score=200.02  Aligned_cols=134  Identities=29%  Similarity=0.373  Sum_probs=126.8

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|.+|+||||+|+..|+.++|++|++.|++++..+.    .|.||||+|+..++.+++++|++.|++++.+|.
T Consensus        75 ~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~----~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~  150 (269)
T 4b93_B           75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNA----DQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL  150 (269)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCC----CCCCccccccccChHHHHHHHHHCCCCCCCCCC
Confidence            4789999999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|+||||+|+..|+.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+
T Consensus       151 ~g~TpL~~A~~~g~~~~v~~Ll~~gad----------vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~G  208 (269)
T 4b93_B          151 SGNTPLIYACSGGHHELVALLLQHGAS----------INASNNKGNTALHEAVIEKHVFVVELLLLHG  208 (269)
T ss_dssp             TCCCHHHHHHHTTCGGGHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCC----------CCccccCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999          4667888999999999999999999887643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=4.4e-26  Score=186.20  Aligned_cols=134  Identities=27%  Similarity=0.281  Sum_probs=125.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~  104 (179)
T 3f6q_A           29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR----GDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH  104 (179)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence            568999999999999999999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      |.||||+|+..++.+++++|+++|+++          +..+..|.|||++|...++.+++++|++.+.
T Consensus       105 g~t~L~~A~~~~~~~~v~~Ll~~ga~~----------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~  162 (179)
T 3f6q_A          105 GNVPLHYACFWGQDQVAEDLVANGALV----------SICNKYGEMPVDKAKAPLRELLRERAEKMGQ  162 (179)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCS----------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCc----------chhccCCCCcHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999984          5578889999999999999998888876543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.93  E-value=4.9e-26  Score=184.49  Aligned_cols=131  Identities=26%  Similarity=0.284  Sum_probs=123.4

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      +++.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (172)
T 3v30_A           28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK----ERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG  103 (172)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc----cCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            4889999999999999999999999999999999998887    899999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++..
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~  158 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGAD----------LTTEADSGYTPMDLAVALGYRKVQQVIENHI  158 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence            999999999999999999999998          4557788999999999999999999887643

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=3.3e-26  Score=183.40  Aligned_cols=134  Identities=25%  Similarity=0.274  Sum_probs=124.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+. |+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        27 ~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  101 (162)
T 1ihb_A           27 NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR----TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN  101 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            467899999999999999999 999999999999999998877    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|.||||+|+..++.+++++|+++|+++         ++..+..|.|||++|+..++.+++++|++.+
T Consensus       102 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          102 EGNLPLHLAAKEGHLRVVEFLVKHTASN---------VGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHccCCC---------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999999999999974         2556778999999999999999999887654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=5.7e-26  Score=187.49  Aligned_cols=131  Identities=24%  Similarity=0.195  Sum_probs=95.4

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        58 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  133 (192)
T 2rfm_A           58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF----SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE  133 (192)
T ss_dssp             HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT
T ss_pred             ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            356667777777777777777777777777777777766665    6777777777777777777777777777777777


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      |.||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++
T Consensus       134 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          134 GETPLIVASKYGRSEIVKKLLELGAD----------ISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            77777777777777777777777776          34456677777777777777777777664

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=8.7e-26  Score=179.74  Aligned_cols=128  Identities=27%  Similarity=0.326  Sum_probs=119.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++ .|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~   99 (153)
T 1awc_B           25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----VDRTPLHMAASEGHANIVEVLLKHGADVNAKDML   99 (153)
T ss_dssp             TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC
Confidence            34454 588999999999999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      |.||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|
T Consensus       100 g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          100 KMTALHWATEHNHQEVVELLIKYGAD----------VHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999998          456778899999999999999998876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=4.9e-26  Score=183.20  Aligned_cols=131  Identities=25%  Similarity=0.233  Sum_probs=96.1

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      .+++..|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  108 (165)
T 3twr_A           33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK----GGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK  108 (165)
T ss_dssp             TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC----CCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCC
Confidence            45566677777777777777777777777777777777666    67777777777777777777777777777777777


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +||||+|+..++.+++++|+++|++          ++..+..|.|||++|.. ++.+++++|++.+
T Consensus       109 ~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          109 FTPLHEAAAKGKYEICKLLLQHGAD----------PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC----------CcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            7777777777777777777777777          34456677777777655 6667777776544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.3e-25  Score=178.91  Aligned_cols=130  Identities=23%  Similarity=0.290  Sum_probs=121.9

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|+||||+ +..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  100 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDT----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT  100 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC
Confidence            45889999999999999 999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      |.||||+|+..++.+++++|+++ ++          ++..+..|.|||++|+..++.+++++|++.
T Consensus       101 g~t~L~~A~~~~~~~~v~~Ll~~-~~----------~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          101 GALPIHLAVQEGHTAVVSFLAAE-SD----------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHTT-SC----------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCcHHHHHHHhChHHHHHHHHhc-cC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999999999 77          456788899999999999999999998763

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=7.1e-26  Score=176.88  Aligned_cols=126  Identities=27%  Similarity=0.268  Sum_probs=117.1

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      ....|.||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~   85 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE----YGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLH   85 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            456789999999999999999999999999998877    8999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      +|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++.
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGAD----------VNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHcCCC----------CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999998          456778899999999999999999988763

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=6.2e-26  Score=197.11  Aligned_cols=143  Identities=26%  Similarity=0.247  Sum_probs=130.6

Q ss_pred             CCCCcccC-CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+.+++.+ +..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++..|
T Consensus        27 ~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  102 (285)
T 1wdy_A           27 GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK----NGATPFLLAAIAGSVKLLKLFLSKGADVNECD  102 (285)
T ss_dssp             TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            35678877 88899999999999999999999999999998877    89999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ..|.||||+|+..++.+++++|+++|+++.............+..+.|+|+.|+..++.++++.|++.
T Consensus       103 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A          103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999998776655555566677889999999999999999988864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.92  E-value=2.2e-26  Score=202.19  Aligned_cols=199  Identities=17%  Similarity=0.043  Sum_probs=165.7

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      ++|.+|..|+||||+|+..|+.++|++|+++|++++..+      |+||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~------g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~   96 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE------NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN   96 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT------TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            689999999999999999999999999999999988763      79999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH-HHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCC
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA-KALLENALMEANKEREKNILKGTAYSLPSPSHSDVGA  163 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~-~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~  163 (298)
                      ||||+|+..|+.+++++|+++|++          ++..+..| .||||+|+..++.+++++|++.+....   ....   
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~----------~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~---~~~~---  160 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWR----------LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF---DLAI---  160 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGG----------GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC---CCST---
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC----------CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc---cccC---
Confidence            999999999999999999999998          56777788 799999999999999999887653211   0000   


Q ss_pred             cccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CC-CCCCCcccccccceeEEEEeecCCC
Q 041054          164 DDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CL-TPPVCPFCRSTIAHLVVVKIENQED  241 (298)
Q Consensus       164 ~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~-~~~~Cp~cr~~I~~~~~~~~~~~~~  241 (298)
                              +...-.+.         ...||..+...++..+++.+..+..+ || ++.++...+..|+++++......+.
T Consensus       161 --------g~t~L~~A---------~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~  223 (285)
T 3kea_A          161 --------LLSCIHIT---------IKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS  223 (285)
T ss_dssp             --------HHHHHHHH---------HHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTT
T ss_pred             --------CccHHHHH---------HHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence                    00000111         12388889999999999988777666 76 9999999999999999877554443


Q ss_pred             C
Q 041054          242 A  242 (298)
Q Consensus       242 ~  242 (298)
                      .
T Consensus       224 ~  224 (285)
T 3kea_A          224 A  224 (285)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=7.1e-25  Score=186.45  Aligned_cols=132  Identities=26%  Similarity=0.300  Sum_probs=73.6

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHh----CCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLD----SGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      ++.+|.+|+||||+|+..|+.++|++|++    .|++++..+.    .|+||||+|+..|+.+++++|++.|++++.+|.
T Consensus         2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~   77 (241)
T 1k1a_A            2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----LRQTPLHLAVITTLPSVVRLLVTAGASPMALDR   77 (241)
T ss_dssp             -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc----cCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Confidence            34556666666666666666666666654    4556655554    566666666666666666666666666666666


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      .|.||||+|+..++.+++++|+++++....      .++..+..+.|||++|+..++.+++++|++
T Consensus        78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  137 (241)
T 1k1a_A           78 HGQTAAHLACEHRSPTCLRALLDSAAPGTL------DLEARNYDGLTALHVAVNTECQETVQLLLE  137 (241)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCccc------cccccCcCCCcHHHHHHHcCCHHHHHHHHH
Confidence            666666666666666666666666552110      023334445555555555555555554443

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=3.4e-25  Score=180.02  Aligned_cols=121  Identities=30%  Similarity=0.387  Sum_probs=114.5

Q ss_pred             cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                      ++|+.||+.|+.++|++||++|+++|.++.    .|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~----~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g   81 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDS----DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENG   81 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcC
Confidence            479999999999999999999999999887    8999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +.+++++|+++|++          ++..|.+|.||||+|+..++.+++++|++.+
T Consensus        82 ~~~~v~~Ll~~gad----------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  126 (169)
T 4gpm_A           82 HKEVVKLLISKGAD----------VNAKDSDGRTPLHHAAENGHKEVVKLLISKG  126 (169)
T ss_dssp             CHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCcCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999          4667888999999999999999999887643

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.92  E-value=9.5e-26  Score=194.36  Aligned_cols=196  Identities=20%  Similarity=0.186  Sum_probs=159.5

Q ss_pred             CCCcc-cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCcccc
Q 041054            3 ARFVN-IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA-DRLHRD   80 (298)
Q Consensus         3 ~~~vn-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d   80 (298)
                      +.+++ ..|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|++.|+ +++.+|
T Consensus        46 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  121 (253)
T 1yyh_A           46 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLHAAVSADAQGVFQILIRNRATDLDARM  121 (253)
T ss_dssp             ------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred             cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            34454 4589999999999999999999999999999998887    89999999999999999999999987 999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS  159 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~  159 (298)
                      ..|.||||+|+..++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++. +++....   .
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~---~  188 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHAD----------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN---N  188 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC---T
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC---C
Confidence            9999999999999999999999999998          456778899999999999999999888765 3332210   0


Q ss_pred             CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      .           +...-.+...         .||..+...++..++..+..+..+ ||++.++-..+..|+.++...
T Consensus       189 ~-----------g~tpL~~A~~---------~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          189 R-----------EETPLFLAAR---------EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             T-----------SCCHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             C-----------CCCHHHHHHH---------CCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            0           1111111112         278889999999988877666666 999999999999998887654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=1.9e-25  Score=184.38  Aligned_cols=130  Identities=22%  Similarity=0.219  Sum_probs=122.4

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      .+|.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  102 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGK  102 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccc----cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            4688999999999999999999999999999999988877    899999999999999999999999999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ||||+|+..++.+++++|+++|+++          +..+..|.||||+|+..++.+++++|++.
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  156 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANV----------NDRNLEGETPLIVASKYGRSEIVKKLLEL  156 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            9999999999999999999999984          55678899999999999999999888765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=2.9e-25  Score=188.04  Aligned_cols=192  Identities=18%  Similarity=0.161  Sum_probs=152.8

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..++.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        31 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  106 (231)
T 3aji_A           31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----AGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG  106 (231)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC----CCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCC
Confidence            45788899999999999999999999999999999998877    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCCCC
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSDVG  162 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~~~  162 (298)
                      .||||+|+..++.+++++|+++|+++          +..+..+.||||+|+..++.+++++|++. .++.....   .  
T Consensus       107 ~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---~--  171 (231)
T 3aji_A          107 CTPLHYAASKNRHEIAVMLLEGGANP----------DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT---E--  171 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT---T--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC---C--
Confidence            99999999999999999999999984          45677789999999999999998888764 33221100   0  


Q ss_pred             CcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeE
Q 041054          163 ADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       163 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~  232 (298)
                               +...-.+...         .||..+...++..+++.+..+..+ ||++.+....+..|.+++
T Consensus       172 ---------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL  224 (231)
T 3aji_A          172 ---------GNTPLHLACD---------EERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLA  224 (231)
T ss_dssp             ---------SCCHHHHHHH---------TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred             ---------CCCHHHHHHH---------CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence                     1111111112         277778888888877776555544 777777655555555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.3e-25  Score=197.12  Aligned_cols=195  Identities=17%  Similarity=0.124  Sum_probs=153.6

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..++.+|..|+||||+|+..|+.++|++|++.|++++..+.    .|+||||+|+..|+.++|++|+++|++++.+|..|
T Consensus        50 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  125 (285)
T 3d9h_A           50 NPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA----DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW  125 (285)
T ss_dssp             CTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT----TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTC
T ss_pred             CcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC
Confidence            34677899999999999999999999999999999998887    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCC
Q 041054           84 RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVG  162 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~  162 (298)
                      .||||+|+..++.+++++|+++|+++..           +..+.|||++|+..++.+++++|++.+ ++.....   .  
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~---~--  189 (285)
T 3d9h_A          126 HTPLFNACVSGSWDCVNLLLQHGASVQP-----------ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS---H--  189 (285)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSC-----------SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT---T--
T ss_pred             CCHHHHHHHcCHHHHHHHHHHCCCCCCC-----------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC---C--
Confidence            9999999999999999999999998542           234789999999999999888877643 3221000   0  


Q ss_pred             CcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054          163 ADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       163 ~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                               +...-.+...         .||..+...++..++..+.+....||++.++...+..|+++++...
T Consensus       190 ---------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          190 ---------LGTPLYLACE---------NQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             ---------TBCHHHHHHH---------TTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ---------CCCHHHHHHH---------cCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                     0111111111         2777788888877766664333338888888888888888877653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=3.8e-25  Score=186.27  Aligned_cols=196  Identities=20%  Similarity=0.172  Sum_probs=158.4

Q ss_pred             CCCcccC-CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCcccc
Q 041054            3 ARFVNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA-DRLHRD   80 (298)
Q Consensus         3 ~~~vn~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga-d~~~~d   80 (298)
                      +.+++.. |..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|++.++ +++..+
T Consensus        14 g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~   89 (223)
T 2f8y_A           14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN----MGRTPLHAAVSADAQGVFQILIRNRATDLDARM   89 (223)
T ss_dssp             TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC
T ss_pred             CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence            4566654 89999999999999999999999999999998877    89999999999999999999999987 899999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS  159 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~  159 (298)
                      ..|.||||+|+..++.+++++|+++|++          ++..+..+.||||+|+..++.+++++|++. +++.....   
T Consensus        90 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---  156 (223)
T 2f8y_A           90 HDGTTPLILAARLAVEGMLEDLINSHAD----------VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN---  156 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---
T ss_pred             CCCCcHHHHHHHhCcHHHHHHHHHcCCC----------CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---
Confidence            9999999999999999999999999998          455677899999999999999998888765 33221110   


Q ss_pred             CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      .           +...-.+...         .||..+...++..+++....+..+ +|++.++...+..|.++++..
T Consensus       157 ~-----------g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          157 R-----------EETPLFLAAR---------EGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             T-----------CCCHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             C-----------CcCHHHHHHH---------cCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            0           0111111111         277888899988877766555555 888888888888888887654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=5.8e-25  Score=168.14  Aligned_cols=124  Identities=38%  Similarity=0.525  Sum_probs=116.2

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      +|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence            589999999999999999999999999988877    8999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++.+
T Consensus        77 ~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           77 RNGHLEVVKLLLEAGAD----------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             HTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HcChHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            99999999999999998          4556788999999999999999999887643

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=7.9e-25  Score=192.21  Aligned_cols=193  Identities=22%  Similarity=0.207  Sum_probs=158.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++..+ 
T Consensus        81 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-  155 (285)
T 3d9h_A           81 QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA----DWHTPLFNACVSGSWDCVNLLLQHGASVQPES-  155 (285)
T ss_dssp             TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-
T ss_pred             CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-
Confidence            4678999999999999999999999999999999999998887    89999999999999999999999999998654 


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSD  160 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~  160 (298)
                      .|.||||+|+..|+.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++.+ ++..    ...
T Consensus       156 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----~~~  221 (285)
T 3d9h_A          156 DLASPIHEAARRGHVECVNSLIAYGGN----------IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ----GKG  221 (285)
T ss_dssp             TTSCHHHHHHHHTCHHHHHHHHHTTCC----------TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC----CBT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC----CCC
Confidence            599999999999999999999999998          4667888999999999999999999887753 3220    000


Q ss_pred             CCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       161 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                                 +...-.+...         .||..+...++..+++.+..+..+ ||++.++  .+..|.++++..
T Consensus       222 -----------g~t~L~~A~~---------~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~  275 (285)
T 3d9h_A          222 -----------QDSPLHAVVR---------TASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLER  275 (285)
T ss_dssp             -----------TBCHHHHHHH---------TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHH
T ss_pred             -----------CCCHHHHHHH---------cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHh
Confidence                       0111111111         378888999999988877666666 9999998  346677766654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.2e-25  Score=179.76  Aligned_cols=130  Identities=21%  Similarity=0.144  Sum_probs=116.5

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      .++..+..|.||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+ .|+.+++++|+++|++++.+|..|.
T Consensus         4 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~   78 (156)
T 1bi7_B            4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS----YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATL   78 (156)
T ss_dssp             ------CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTC
T ss_pred             CccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            4567789999999999999999999999999999998887    8999999985 9999999999999999999999999


Q ss_pred             c-HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           85 I-PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        85 t-pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      | |||+|+..++.+++++|+++|+++          +..+..|.|||++|+..++.+++++|++.+
T Consensus        79 ttpL~~A~~~~~~~~v~~Ll~~ga~~----------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B           79 TRPVHDAAREGFLDTLVVLHRAGARL----------DVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCS----------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             cHHHHHHHHCCCHHHHHHHHHcCCCC----------cccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            9 999999999999999999999984          556788999999999999999999887653

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=1.1e-25  Score=208.60  Aligned_cols=134  Identities=26%  Similarity=0.229  Sum_probs=112.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      +|+++|..|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.++|++|++.|++++.+|.
T Consensus         3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~   78 (437)
T 1n11_A            3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV----KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK   78 (437)
T ss_dssp             ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS----CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred             CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Confidence            5789999999999999999999999999999999999998877    799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|.||||+|+..|+.+++++|+++|+++          +..+..+.|||++|+..++.++++.|++..
T Consensus        79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~  136 (437)
T 1n11_A           79 DDQTPLHCAARIGHTNMVKLLLENNANP----------NLATTAGHTPLHIAAREGHVETVLALLEKE  136 (437)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCT----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHhCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Confidence            9999999999999999999999999985          445667788999999999888888777643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=1.3e-25  Score=193.79  Aligned_cols=144  Identities=24%  Similarity=0.171  Sum_probs=122.7

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC----------CCCCCCChHHHHHHHcCCHHHHHHHHH---
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG----------GYGCPGSTPLHLAARGGSIDCIRELLA---   71 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~----------~~~~~g~TpLh~A~~~g~~~~v~~Ll~---   71 (298)
                      .++.+|..|+||||+|+..|+.++|++||++|++++..+.          ..+..|+||||+|+..|+.++|++|++   
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  164 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGH  164 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            4556677999999999999999999999999999998872          001269999999999999999999999   


Q ss_pred             cCCCCcccccCCCcHHHHHHhcCc---------HHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHH
Q 041054           72 WGADRLHRDVSGRIPYAVALKHKH---------GACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKERE  142 (298)
Q Consensus        72 ~gad~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  142 (298)
                      +|++++.+|..|+||||+|+..++         .+++++|+++|+++...   ....+..+..|.||||+|+..++.+++
T Consensus       165 ~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~---~~~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          165 KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPD---TNLEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT---CCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccc---cchhhcccCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999998877         69999999999973211   011256788999999999999999999


Q ss_pred             HHHhcCCCC
Q 041054          143 KNILKGTAY  151 (298)
Q Consensus       143 ~~ll~~~~~  151 (298)
                      ++|++.+..
T Consensus       242 ~~Ll~~g~~  250 (260)
T 3jxi_A          242 QHIIRREIA  250 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHhCCC
Confidence            988776543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=190.36  Aligned_cols=135  Identities=31%  Similarity=0.358  Sum_probs=100.4

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCC----------------------------------CCCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGG----------------------------------YGCP   49 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~----------------------------------~~~~   49 (298)
                      .+|.+|..|+||||+|+..|+.++|++|++.|+ +++..+..                                  .+..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            488999999999999999999999999999998 77765541                                  1234


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHH
Q 041054           50 GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKA  128 (298)
Q Consensus        50 g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t  128 (298)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++ .|++          ++..|..|.|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----------~~~~d~~g~T  252 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----------ISLTDRDGST  252 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----------TTCCCTTSCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----------CcCcCCCCCC
Confidence            6677777777777777777777777777777777777777777777777777776 6666          3445666777


Q ss_pred             HHHHHHHhhhHHHHHHHhcCC
Q 041054          129 LLENALMEANKEREKNILKGT  149 (298)
Q Consensus       129 ~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ||++|+..++.+++++|++..
T Consensus       253 pL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          253 ALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHhcc
Confidence            777777777777777666543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.91  E-value=9.3e-25  Score=188.13  Aligned_cols=133  Identities=28%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .|++++.+|..|+||||+|+..|+.+++++|+++++ +++..+.    .|.||||+|+..|+.+++++|++.|++++.+|
T Consensus        79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d  154 (253)
T 1yyh_A           79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH----DGTTPLILAARLAVEGMLEDLINSHADVNAVD  154 (253)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT----TCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBC
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----CCCcHHHHHHHcChHHHHHHHHHcCCCCCCcC
Confidence            467788888888888888888888888888888876 7776666    68888888888888888888888888888888


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ..|.||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++.
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGAN----------KDMQNNREETPLFLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            8888888888888888888888888887          345567778888888888888877777664

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=1.2e-24  Score=184.41  Aligned_cols=137  Identities=24%  Similarity=0.272  Sum_probs=121.0

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccC-CCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAST-GGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~-~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      +.++|.+|..|+||||+|+..|+.++|++|+++|+++.... ...|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus        27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  106 (232)
T 2rfa_A           27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT  106 (232)
T ss_dssp             CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccC
Confidence            78999999999999999999999999999999999863221 22334899999999999999999999999999998876


Q ss_pred             -------------CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHH----HH
Q 041054           82 -------------SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKERE----KN  144 (298)
Q Consensus        82 -------------~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~----~~  144 (298)
                                   .|.||||+|+..|+.+++++|+++|++          ++..|..|.||||+|+..++.+++    ++
T Consensus       107 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~  176 (232)
T 2rfa_A          107 GSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD----------IRAQDSLGNTVLHILILQPNKTFACQMYNL  176 (232)
T ss_dssp             SGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHTCSCHHHHHHHHHH
T ss_pred             CcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHcCChHHHHHHHHH
Confidence                         799999999999999999999999998          466788899999999999998876    66


Q ss_pred             HhcCC
Q 041054          145 ILKGT  149 (298)
Q Consensus       145 ll~~~  149 (298)
                      |++.+
T Consensus       177 Ll~~g  181 (232)
T 2rfa_A          177 LLSYD  181 (232)
T ss_dssp             HHHTT
T ss_pred             HHhcC
Confidence            66543

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=5.3e-25  Score=197.01  Aligned_cols=210  Identities=21%  Similarity=0.163  Sum_probs=163.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.+++.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++..|.
T Consensus        47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~  122 (351)
T 3utm_A           47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK----GGLVPLHNACSYGHYEVTELLLKHGACVNAMDL  122 (351)
T ss_dssp             TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC
Confidence            4678899999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChh----hh--------------------------------------
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLK----FI--------------------------------------  119 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~----~~--------------------------------------  119 (298)
                      .|.||||+|+..++.+++++|+++|+++........    ..                                      
T Consensus       123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  202 (351)
T 3utm_A          123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI  202 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhc
Confidence            999999999999999999999999999776432111    00                                      


Q ss_pred             --hHhhHHHHHHHHHHHHh---hhHHHHHHHhcC-CCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCc
Q 041054          120 --SELNQEAKALLENALME---ANKEREKNILKG-TAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGH  193 (298)
Q Consensus       120 --~~~~~~~~t~L~~A~~~---~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH  193 (298)
                        ...+..+.|+||+|+..   +..+++++|++. .++.....   .           +...-.+..         -.||
T Consensus       203 ~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~---~-----------g~t~L~~A~---------~~g~  259 (351)
T 3utm_A          203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK---D-----------FMTPLHVAA---------ERAH  259 (351)
T ss_dssp             TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT---T-----------CCCHHHHHH---------HTTC
T ss_pred             ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC---C-----------CCCHHHHHH---------HcCC
Confidence              01134456888888887   556777776654 33321110   0           001111111         1378


Q ss_pred             hhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEEeec
Q 041054          194 QMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKIEN  238 (298)
Q Consensus       194 ~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~~  238 (298)
                      ..+...++..++..+..+..+ ||++.++..++..|+++++.....
T Consensus       260 ~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad  305 (351)
T 3utm_A          260 NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD  305 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            888888988888777666665 999999999999999998876443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=3.5e-25  Score=188.19  Aligned_cols=195  Identities=17%  Similarity=0.134  Sum_probs=157.0

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|++.|++++.++..|
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   77 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE----DQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG   77 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCC----CCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            36889999999999999999999999999999999998877    79999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCC
Q 041054           84 RIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDV  161 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~  161 (298)
                      .||||+|+..++.+++++|++++ .+          ++..+..+.|||++|+..++.+++++|++.+ ++.....   . 
T Consensus        78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~---~-  143 (237)
T 3b7b_A           78 STCLHLAAKKGHYEVVQYLLSNGQMD----------VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN---E-  143 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---T-
T ss_pred             CcHHHHHHHcCCHHHHHHHHhCCCCC----------cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCC---C-
Confidence            99999999999999999999998 55          3556677899999999999999888887643 3221110   0 


Q ss_pred             CCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          162 GADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       162 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                                +...-.++..         .|+..+...++..++..+..+..+ ||++.++...+..|.++++..
T Consensus       144 ----------g~t~L~~A~~---------~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (237)
T 3b7b_A          144 ----------ENICLHWAAF---------SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR  199 (237)
T ss_dssp             ----------SCCHHHHHHH---------HCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             ----------CCCHHHHHHH---------CCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence                      0011011111         266677788877776666555555 888888888888888887754

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=5.9e-26  Score=187.42  Aligned_cols=129  Identities=14%  Similarity=0.032  Sum_probs=116.1

Q ss_pred             CcccCC-CCCCcHHHHHHHcCCh----HHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC------HHHHHHHHHcC
Q 041054            5 FVNIRD-GRGATPLHLAARQRRP----ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS------IDCIRELLAWG   73 (298)
Q Consensus         5 ~vn~~d-~~G~TpLh~Aa~~g~~----~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~------~~~v~~Ll~~g   73 (298)
                      +++.++ ..|+||||+|+..++.    +++++||++|+++|.++.    .|+||||+|+..++      .+++++|+++|
T Consensus        29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G  104 (186)
T 3t8k_A           29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK----EGTTLFFPLFQGGGNDITGTTELCKIFLEKG  104 (186)
T ss_dssp             SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----TCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCcchhhHHHHHHHHHHCC
Confidence            456666 7799999999999975    599999999999999987    89999999999887      68899999999


Q ss_pred             CCCcccccCCC-cHHHHHHhcC-----cHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           74 ADRLHRDVSGR-IPYAVALKHK-----HGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        74 ad~~~~d~~g~-tpL~~A~~~~-----~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      ++++.+|..|. ||||+|+..+     +.+++++|++ +|++          ++.+|..|+|||++|...++.+++++|+
T Consensus       105 adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----------~~~~d~~G~TpL~~A~~~~~~~~v~~L~  174 (186)
T 3t8k_A          105 ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----------LLIKDKWGLTALEFVKRCQKPIALKMME  174 (186)
T ss_dssp             CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----------TTCCCTTSCCHHHHHHTTTCHHHHHHHH
T ss_pred             CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----------CcccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999 9999999954     4569999999 9999          5778899999999999999999988876


Q ss_pred             c
Q 041054          147 K  147 (298)
Q Consensus       147 ~  147 (298)
                      .
T Consensus       175 ~  175 (186)
T 3t8k_A          175 D  175 (186)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.91  E-value=1.3e-24  Score=185.07  Aligned_cols=130  Identities=25%  Similarity=0.280  Sum_probs=72.5

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------Cc
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD------RL   77 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad------~~   77 (298)
                      .++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|++.|++      ++
T Consensus        36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  111 (236)
T 1ikn_D           36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDF----RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK  111 (236)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT----TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG
T ss_pred             HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhh
Confidence            35566666666666666666666666666666666655554    455555555555555555555555544      34


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      ..+..|.||||+|+..++.+++++|+++|+++          +..+. .|.||||+|+..++.+++++|++
T Consensus       112 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  172 (236)
T 1ikn_D          112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADV----------NAQEPCNGRTALHLAVDLQNPDLVSLLLK  172 (236)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT----------TCCCTTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44455555555555555555555555555552          22333 45555555555555555554444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=3.8e-25  Score=188.14  Aligned_cols=197  Identities=20%  Similarity=0.158  Sum_probs=161.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC----CCc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA----DRL   77 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga----d~~   77 (298)
                      .+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|++.++    +++
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  110 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR----HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE  110 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccc
Confidence            3678999999999999999999999999999999999998877    89999999999999999999999998    899


Q ss_pred             ccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENALMEANKEREKNILKG-TAYSLPS  155 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~  155 (298)
                      ..|..|.||||+|+..++.+++++|+++|+++          +..+ ..+.||||+|+..++.+++++|++. +++....
T Consensus       111 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  180 (241)
T 1k1a_A          111 ARNYDGLTALHVAVNTECQETVQLLLERGADI----------DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM  180 (241)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC
T ss_pred             ccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc----------ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999999984          4445 6799999999999999999988775 3322110


Q ss_pred             CCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEE
Q 041054          156 PSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       156 p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      .              .+...-.+...         .||..+...++..+++.+..+..+ ||++.+.-..+..|.+.+..
T Consensus       181 ~--------------~g~t~L~~A~~---------~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~  237 (241)
T 1k1a_A          181 Y--------------SGSSALHSASG---------RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKAT  237 (241)
T ss_dssp             T--------------TSCBHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC---
T ss_pred             C--------------CCCCHHHHHHH---------cCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhcc
Confidence            0              01111111112         278889999999988877666666 99999999999888888776


Q ss_pred             E
Q 041054          235 K  235 (298)
Q Consensus       235 ~  235 (298)
                      .
T Consensus       238 ~  238 (241)
T 1k1a_A          238 R  238 (241)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=4.3e-25  Score=169.32  Aligned_cols=118  Identities=23%  Similarity=0.216  Sum_probs=105.8

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      .+..|.||||+|+..|+.+++++|++.|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~   78 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLL   78 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT----TSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCC----CCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence            356789999999999999999999999999998887    8999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHH
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKE  140 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~  140 (298)
                      +|+..++.+++++|+++|++          ++..+.+|.|||++|...+..+
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGAD----------KTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHhCCHHHHH
Confidence            99999999999999999998          4567888999999995444443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.6e-24  Score=155.56  Aligned_cols=93  Identities=45%  Similarity=0.621  Sum_probs=88.7

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      +|+||||+|+..|+.+++++|+++|++++.++.    .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            589999999999999999999999999999887    8999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCC
Q 041054           92 KHKHGACAALLNPASAE  108 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~  108 (298)
                      ..++.+++++|+++|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999999874

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=3.9e-24  Score=180.02  Aligned_cols=133  Identities=28%  Similarity=0.233  Sum_probs=102.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+.+++.+|..|+||||+|+..|+.+++++|+++++ +++..+.    .|.||||+|+..++.+++++|+++|++++.+|
T Consensus        47 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  122 (223)
T 2f8y_A           47 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH----DGTTPLILAARLAVEGMLEDLINSHADVNAVD  122 (223)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----CCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcC
Confidence            356778888888888888888888888888888776 6666655    67888888888888888888888888888888


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ..|.||||+|+..++.+++++|+++|+++          +..+..|.|||++|+..++.+++++|++.
T Consensus       123 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          123 DLGKSALHWAAAVNNVDAAVVLLKNGANK----------DMQNNREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            88888888888888888888888887773          44566677777777777777777766554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=1.2e-24  Score=187.38  Aligned_cols=140  Identities=24%  Similarity=0.181  Sum_probs=120.3

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC---------CCCCCChHHHHHHHcCCHHHHHHHHH---cCCC
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG---------YGCPGSTPLHLAARGGSIDCIRELLA---WGAD   75 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~---------~~~~g~TpLh~A~~~g~~~~v~~Ll~---~gad   75 (298)
                      .+|..|+||||+|+..|+.++|++|+++|++++..+..         .|..|.||||+|+..|+.++|++|++   +|++
T Consensus        85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~  164 (256)
T 2etb_A           85 DEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS  164 (256)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence            35578999999999999999999999999999988762         11129999999999999999999999   9999


Q ss_pred             CcccccCCCcHHHHHHh--cCcHH-------HHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           76 RLHRDVSGRIPYAVALK--HKHGA-------CAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        76 ~~~~d~~g~tpL~~A~~--~~~~~-------~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      ++.+|..|+||||+|+.  .++.+       ++++|+++|+++...   ....+..|..|.|||++|+..++.+++++|+
T Consensus       165 ~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~---~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll  241 (256)
T 2etb_A          165 LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT---VQLEEISNHQGLTPLKLAAKEGKIEIFRHIL  241 (256)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT---CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccc---cccccccCCCCCCHHHHHHHhCCHHHHHHHH
Confidence            99999999999999999  78888       999999999983110   0111667889999999999999999999888


Q ss_pred             cCCC
Q 041054          147 KGTA  150 (298)
Q Consensus       147 ~~~~  150 (298)
                      +.+.
T Consensus       242 ~~g~  245 (256)
T 2etb_A          242 QREF  245 (256)
T ss_dssp             HHHH
T ss_pred             hCCC
Confidence            7543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.91  E-value=3.2e-24  Score=181.55  Aligned_cols=134  Identities=28%  Similarity=0.231  Sum_probs=125.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..++.+++++|+++|++++.+|.
T Consensus        62 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  137 (231)
T 3aji_A           62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ----NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH  137 (231)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            4678999999999999999999999999999999999998877    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|.||||+|+..++.+++++|+++|+++          +..+..|.||||+|+..++.+++++|++.+
T Consensus       138 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          138 YDATAMHRAAAKGNLKMVHILLFYKAST----------NIQDTEGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCc----------cccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            9999999999999999999999999984          556778999999999999999988887653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.91  E-value=1.8e-24  Score=188.03  Aligned_cols=90  Identities=26%  Similarity=0.304  Sum_probs=67.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC-CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054           49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS-GRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK  127 (298)
Q Consensus        49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  127 (298)
                      .|.||||+|+..|+.++|++|+++|++++.++.. |+||||+|+..++.+++++|+++|++          ++.++..|.
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad----------~~~~d~~g~  226 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----------PTARMYGGR  226 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----------CcccccCCC
Confidence            5777777777777777777777777777777644 77777777777777777777777777          345667778


Q ss_pred             HHHHHHHHhhhHHHHHHHhcC
Q 041054          128 ALLENALMEANKEREKNILKG  148 (298)
Q Consensus       128 t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      |||++|+..++.+++++|++.
T Consensus       227 tpL~~A~~~~~~~~v~~Ll~~  247 (282)
T 1oy3_D          227 TPLGSALLRPNPILARLLRAH  247 (282)
T ss_dssp             CHHHHHHTSSCHHHHHHHHHT
T ss_pred             CHHHHHHHcCCcHHHHHHHHc
Confidence            888888888888877776653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=4.6e-24  Score=176.74  Aligned_cols=137  Identities=21%  Similarity=0.207  Sum_probs=117.6

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCccccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL-AWGADRLHRDV   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~   81 (298)
                      +.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+ ..+++++..|.
T Consensus        29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~  104 (201)
T 3hra_A           29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS----ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR  104 (201)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhccCcccccccC
Confidence            358899999999999999999999999999999999998877    7999999999999999999999 55779999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh-----HHHHHHHh-cCCCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEAN-----KEREKNIL-KGTAYSL  153 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~-----~~~~~~ll-~~~~~~~  153 (298)
                      .|.||||+|+..++.+++++|+++| ++          ++..+..|.||||+|+..+.     .+++++|+ .|+++..
T Consensus       105 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          105 YGGNALIPAAEKGHIDNVKLLLEDGRED----------IDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             TSCCSHHHHHHTTCHHHHHHHHHHCCCC----------TTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCC----------cCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc
Confidence            9999999999999999999999998 66          45567788889999887776     77776665 4677654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=4.4e-24  Score=180.94  Aligned_cols=140  Identities=24%  Similarity=0.227  Sum_probs=123.1

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC---------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054            7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG---------YGCPGSTPLHLAARGGSIDCIRELLAWGADRL   77 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~---------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~   77 (298)
                      +.+|..|+||||+|+..|+.+++++|+++|++++..+..         .|..|.||||+|+..|+.+++++|+++|++++
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            678889999999999999999999999999999886541         13369999999999999999999999999999


Q ss_pred             ccccCCCcHHHHHHhcCcHHHH----HHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           78 HRDVSGRIPYAVALKHKHGACA----ALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        78 ~~d~~g~tpL~~A~~~~~~~~~----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      .+|..|+||||+|+..++.+++    ++|+++|+++...    ...+..+..|.|||++|+..++.+++++|++.+.
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~----~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~  221 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK----SLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK  221 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSC----CGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhh----hhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence            9999999999999999999988    9999999975321    1124678899999999999999999998877543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.91  E-value=5e-24  Score=187.30  Aligned_cols=132  Identities=23%  Similarity=0.241  Sum_probs=109.0

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc-
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV-   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-   81 (298)
                      |.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.++|++|+++|++++..|. 
T Consensus        63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  138 (299)
T 1s70_B           63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN----EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSE  138 (299)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            577888888999999999999999999999999988888776    788999999999999999999999888876653 


Q ss_pred             -----------------------------------------------------------CCCcHHHHHHhcCcHHHHHHh
Q 041054           82 -----------------------------------------------------------SGRIPYAVALKHKHGACAALL  102 (298)
Q Consensus        82 -----------------------------------------------------------~g~tpL~~A~~~~~~~~~~~L  102 (298)
                                                                                 .|.||||+|+..|+.+++++|
T Consensus       139 g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  218 (299)
T 1s70_B          139 GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL  218 (299)
T ss_dssp             SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHH
Confidence                                                                       356777778888888888888


Q ss_pred             ccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054          103 NPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus       103 l~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      +++|++          ++..|..|.||||+|+..++.+++++|++.
T Consensus       219 l~~g~d----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  254 (299)
T 1s70_B          219 IQARYD----------VNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (299)
T ss_dssp             HTTTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHcCCC----------CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc
Confidence            888887          355677788888888888888888777664

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=2.1e-24  Score=183.63  Aligned_cols=135  Identities=23%  Similarity=0.265  Sum_probs=70.9

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCcccc--CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCAS--TGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      |++++.+|..|+||||+|+..|+.+++++|+++|++++..  ....+..|.||||+|+..|+.+++++|+++|++++.++
T Consensus        68 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  147 (236)
T 1ikn_D           68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE  147 (236)
T ss_dssp             CCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            4455555555555555555555555555555555432110  01111245555555555555555555555555555555


Q ss_pred             c-CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           81 V-SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        81 ~-~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      . .|.||||+|+..++.+++++|+++|++          ++..+..|.|||++|+..++.+++++|++
T Consensus       148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  205 (236)
T 1ikn_D          148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD----------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQ  205 (236)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCC----------SCCCCTTCCCGGGGCTTSSCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCcccCCCCCHHHHHHccCchHHHHHHHH
Confidence            4 555555555555555555555555555          23344555555555555555555555444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.90  E-value=6.8e-24  Score=180.21  Aligned_cols=188  Identities=21%  Similarity=0.171  Sum_probs=153.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG-ADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d   80 (298)
                      .|.+++..|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|++.| ++++..|
T Consensus        33 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~  108 (237)
T 3b7b_A           33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA----EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD  108 (237)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT----TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC
T ss_pred             cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC
Confidence            4678999999999999999999999999999999999998877    8999999999999999999999998 8999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHS  159 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~  159 (298)
                      ..|.||||+|+..++.+++++|+++|+++          +..+..+.||||+|+..++.+++++|++.+ ++....   .
T Consensus       109 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---~  175 (237)
T 3b7b_A          109 DGGWTPMIWATEYKHVDLVKLLLSKGSDI----------NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN---I  175 (237)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC---T
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC---C
Confidence            99999999999999999999999999984          556778899999999999999999887653 322110   0


Q ss_pred             CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCccccc
Q 041054          160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRS  226 (298)
Q Consensus       160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~  226 (298)
                      .           +...-.++..         .|+..+...++..++.....+..+ ||++.++...+.
T Consensus       176 ~-----------g~t~L~~A~~---------~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~  223 (237)
T 3b7b_A          176 H-----------GDSPLHIAAR---------ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV  223 (237)
T ss_dssp             T-----------CCCHHHHHHH---------TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred             C-----------CCCHHHHHHH---------hCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence            0           0111111112         277778888888877776666555 888887766553

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.90  E-value=5.6e-25  Score=191.84  Aligned_cols=123  Identities=28%  Similarity=0.302  Sum_probs=116.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+++++.++..|.||||+|+..++.+++++|+++|++++..+.    .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus       108 ~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~----~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~  183 (269)
T 4b93_B          108 HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDL----SGNTPLIYACSGGHHELVALLLQHGASINASNN  183 (269)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCT
T ss_pred             cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHHCCCCCCcccc
Confidence            4688999999999999999999999999999999999999887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEAN  138 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~  138 (298)
                      .|+||||+|+..|+.+++++|+++|+++          +.+|.+|+|||++|+.++.
T Consensus       184 ~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~----------~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          184 KGNTALHEAVIEKHVFVVELLLLHGASV----------QVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCTTSCCSGGGSCTTCH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCC----------CCcCCCCCCHHHHHHhCCc
Confidence            9999999999999999999999999994          5678899999999987654

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=8.9e-24  Score=178.31  Aligned_cols=181  Identities=15%  Similarity=0.081  Sum_probs=137.8

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCcc--c-cCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC--CCCcccc
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVC--A-STGGYGCPGSTPLHLAARGGSIDCIRELLAWG--ADRLHRD   80 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~--~-~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g--ad~~~~d   80 (298)
                      ++.+|..|+||||+|+..|+.+++++|+++|++++  . .+.    .|+||||+|+..|+.+++++|+++|  ++++..|
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  104 (228)
T 2dzn_A           29 LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD----SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT  104 (228)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT----TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC----CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCC
Confidence            44588999999999999999999999999995444  3 333    7999999999999999999999998  8889999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSD  160 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~  160 (298)
                      ..|.||||+|+..++.+++++|+++|+++          +..+..|.||||+|+..++.+++++|++.+........ ..
T Consensus       105 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d-~~  173 (228)
T 2dzn_A          105 NQGVTCLHLAVGKKWFEVSQFLIENGASV----------RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD-KQ  173 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC-TT
T ss_pred             cCCCCHHHHHHHcCCHhHHHHHHHcCCCc----------cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC-CC
Confidence            99999999999999999999999999984          55677889999999999999999888875521111110 00


Q ss_pred             CCCcccccccCCCcccccccccccceEEeCCCchhHHHHHH-HHhhcCCCCCCCC-CCCCCCC
Q 041054          161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTL-ALCCHNKPNPTTA-CLTPPVC  221 (298)
Q Consensus       161 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~-~l~~~~~~~~~~~-~~~~~~C  221 (298)
                                 +...-.+...         .||..+...++ ..++..+..+..+ ||++.+.
T Consensus       174 -----------g~t~L~~A~~---------~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~  216 (228)
T 2dzn_A          174 -----------GWTPLFHALA---------EGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  216 (228)
T ss_dssp             -----------SCCHHHHHHH---------TTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCS
T ss_pred             -----------CCCHHHHHHH---------cCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHH
Confidence                       0111111111         37888888888 7777766555555 7777764

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=2.6e-25  Score=202.59  Aligned_cols=205  Identities=17%  Similarity=0.070  Sum_probs=165.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC---CCCcc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG---ADRLH   78 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g---ad~~~   78 (298)
                      .|+++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|++.|   ++++.
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~  230 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK----SERSALHQAAANRDFGMMVYMLNSTKLKGDIEE  230 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCC----CCCCHHHHHHHCCCHHHHHHHHhcCccccChhh
Confidence            4789999999999999999999999999999999999998887    8999999999999999999999998   89999


Q ss_pred             cccCCCcHHHHHHhcC---cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC--CCCCC
Q 041054           79 RDVSGRIPYAVALKHK---HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG--TAYSL  153 (298)
Q Consensus        79 ~d~~g~tpL~~A~~~~---~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~--~~~~~  153 (298)
                      .|..|.||||+|+..+   +.+++++|+++|+++.....  ......+..|.||||+|+..++.+++++|++.  .++..
T Consensus       231 ~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~--~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~  308 (373)
T 2fo1_E          231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA--ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK  308 (373)
T ss_dssp             CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG--GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred             cCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc--cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence            9999999999999998   89999999999998654221  11123466789999999999999999998853  33322


Q ss_pred             CCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeE
Q 041054          154 PSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       154 ~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~  232 (298)
                      ...   .           +...-.+...         .||..++..++..++..+..+..+ |+++.++-..+..|++++
T Consensus       309 ~d~---~-----------g~TpL~~A~~---------~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~L  365 (373)
T 2fo1_E          309 QDE---D-----------GKTPIMLAAQ---------EGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF  365 (373)
T ss_dssp             CCT---T-----------CCCHHHHHHH---------HTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCC---C-----------CCCHHHHHHH---------cCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            111   0           0111111111         388889999999988877666666 999999999998888877


Q ss_pred             EEE
Q 041054          233 VVK  235 (298)
Q Consensus       233 ~~~  235 (298)
                      +..
T Consensus       366 l~~  368 (373)
T 2fo1_E          366 DRC  368 (373)
T ss_dssp             HTT
T ss_pred             Hhc
Confidence            543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=9.9e-25  Score=197.53  Aligned_cols=199  Identities=14%  Similarity=0.063  Sum_probs=144.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc----CCCCcc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW----GADRLH   78 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~----gad~~~   78 (298)
                      |.++|.+|..|+||||+|+..|+.++|++|+++|++++..      .|.||||+|+..|+.++|++|++.    |++++.
T Consensus        43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~  116 (364)
T 3ljn_A           43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW------HGQKPIHLAVMANKTDLVVALVEGAKERGQMPES  116 (364)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB------TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc------CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence            5667777777777777777777777777777777754432      467777777777777777777777    666666


Q ss_pred             -----------------cccCCCcHHHHHHhcC--cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054           79 -----------------RDVSGRIPYAVALKHK--HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK  139 (298)
Q Consensus        79 -----------------~d~~g~tpL~~A~~~~--~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  139 (298)
                                       .|..|.||||+|+..|  +.+++++|+++|++          ++..+..|.|||++|+..++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~----------~~~~d~~g~t~L~~A~~~g~~  186 (364)
T 3ljn_A          117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS----------PTAKDKADETPLMRAMEFRNR  186 (364)
T ss_dssp             HHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC----------TTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC----------CcccCCCCCCHHHHHHHcCCH
Confidence                             8888999999999999  89999999999988          455677889999999999999


Q ss_pred             HHHHHHhcCCCC-CCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCC
Q 041054          140 EREKNILKGTAY-SLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLT  217 (298)
Q Consensus       140 ~~~~~ll~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~  217 (298)
                      +++++|++.+.. ........+.         .+...-.+         ....||..++..++..+++.+..+..+ ||+
T Consensus       187 ~~v~~Ll~~g~~~~~~~~~~~~~---------~g~t~L~~---------A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          187 EALDLMMDTVPSKSSLRLDYANK---------QGNSHLHW---------AILINWEDVAMRFVEMGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             HHHHHHHHHCSCSSSCCTTCCCT---------TCCCTTHH---------HHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             HHHHHHHhcccccccccccccCC---------CCCcHHHH---------HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            988888764321 1100110100         00011011         112388889999999988887766666 999


Q ss_pred             CCCCcccccccceeEEEE
Q 041054          218 PPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       218 ~~~Cp~cr~~I~~~~~~~  235 (298)
                      +.+|-..+..|+++++..
T Consensus       249 ~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          249 YLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             HHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHhChHHHHHHHHHc
Confidence            999999999999998875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.90  E-value=7.5e-24  Score=175.48  Aligned_cols=121  Identities=23%  Similarity=0.243  Sum_probs=61.7

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCC-CccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGA-LVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      .+.||||.|+..|+.+.|+.||..+. +++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT----EGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYA   79 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            44555555555555555555555433 4444443    455555555555555555555555555555555555555555


Q ss_pred             HhcCcHHHHHHhc-cCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           91 LKHKHGACAALLN-PASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        91 ~~~~~~~~~~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      +..++.+++++|+ ..+++          ++..+..+.||||+|+..++.+++++|+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPD----------LNKHNRYGGNALIPAAEKGHIDNVKLLL  126 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCC----------TTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHhccCcc----------cccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence            5555555555555 22333          2333444455555555555555444443

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=6.9e-24  Score=170.91  Aligned_cols=123  Identities=19%  Similarity=0.175  Sum_probs=116.2

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      .|.||||+|+..|+.+++++|++.|++++..+.    .|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            589999999999999999999999999988887    8999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      ..++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.
T Consensus        78 ~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  124 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVD----------VNEYDWNGGTPLLYAVHGNHVKCVKMLLES  124 (167)
T ss_dssp             HHTCHHHHHHHHHHTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHCCCC----------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999998          456678899999999999999999988764

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=3.1e-24  Score=184.85  Aligned_cols=139  Identities=21%  Similarity=0.296  Sum_probs=121.3

Q ss_pred             CCCccc----CCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccC-------CCCCCCCChHHHHHHHcCCHHHHHH
Q 041054            3 ARFVNI----RDGRGATPLHLAARQ---RRPECVHILLDSGALVCAST-------GGYGCPGSTPLHLAARGGSIDCIRE   68 (298)
Q Consensus         3 ~~~vn~----~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~-------~~~~~~g~TpLh~A~~~g~~~~v~~   68 (298)
                      +.++|.    +|..|+||||+|+..   |+.++|++|++.|++++...       ...|..|+||||+|+..|+.++|++
T Consensus        29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~  108 (256)
T 2etb_A           29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL  108 (256)
T ss_dssp             TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred             CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence            577887    899999999999999   99999999999998876433       1223479999999999999999999


Q ss_pred             HHHcCCCCcccccC-------------CCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHHH
Q 041054           69 LLAWGADRLHRDVS-------------GRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLEN  132 (298)
Q Consensus        69 Ll~~gad~~~~d~~-------------g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~~  132 (298)
                      |+++|++++.+|..             |.||||+|+..|+.+++++|++   +|++          ++..|.+|.||||+
T Consensus       109 Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~----------~n~~d~~g~TpLh~  178 (256)
T 2etb_A          109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----------LEATDSLGNTVLHA  178 (256)
T ss_dssp             HHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHHH
T ss_pred             HHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----------cCccCCCCCCHHHH
Confidence            99999999999986             9999999999999999999999   8998          46678899999999


Q ss_pred             HHH--hhhHH-------HHHHHhc-CCCC
Q 041054          133 ALM--EANKE-------REKNILK-GTAY  151 (298)
Q Consensus       133 A~~--~~~~~-------~~~~ll~-~~~~  151 (298)
                      |+.  .++.+       ++++|++ |+++
T Consensus       179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          179 LVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            998  67776       7777766 4443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.90  E-value=2.4e-23  Score=175.66  Aligned_cols=135  Identities=24%  Similarity=0.227  Sum_probs=122.9

Q ss_pred             CCccc-CCCCCCcHHHHHHHcCChHHHHHHHhCC--CCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            4 RFVNI-RDGRGATPLHLAARQRRPECVHILLDSG--ALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         4 ~~vn~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--a~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+++. +|..|+||||+|+..|+.+++++|+++|  ++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus        62 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  137 (228)
T 2dzn_A           62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN----QGVTCLHLAVGKKWFEVSQFLIENGASVRIKD  137 (228)
T ss_dssp             CCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc----CCCCHHHHHHHcCCHhHHHHHHHcCCCccccC
Confidence            45555 8899999999999999999999999998  77777776    89999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCC-CCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh-c-CCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPAS-AEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL-K-GTAYS  152 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~g-a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll-~-~~~~~  152 (298)
                      ..|.||||+|+..++.+++++|+++| ++          ++..+..|.||||+|+..++.+++++|+ + |+++.
T Consensus       138 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          138 KFNQIPLHRAASVGSLKLIELLCGLGKSA----------VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHTTTCCC----------SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCccc----------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999 76          4567888999999999999999999887 4 56544

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=6.9e-25  Score=185.18  Aligned_cols=132  Identities=23%  Similarity=0.145  Sum_probs=116.6

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCC
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADRLHRDVSGR   84 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~   84 (298)
                      ++..|..|.||||+|+..|+.++|++|++.|++++..+.    .|+||||+|+..|+.++|++|++. |++++.+|..|+
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK----AGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence            445677899999999999999999999999999998887    899999999999999999999999 999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCC
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAY  151 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~  151 (298)
                      ||||+|+..|+.+++++|+++|++          ++..+.+|.|||++|+..+..++++.++.....
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGAR----------TDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC----------SCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC----------CccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            999999999999999999999999          456788899999999999999988888775543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=9.8e-25  Score=198.81  Aligned_cols=206  Identities=17%  Similarity=0.116  Sum_probs=160.6

Q ss_pred             CCCcccCC-CCCCcHHHHHHHcCChHHHHHHH--------hCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054            3 ARFVNIRD-GRGATPLHLAARQRRPECVHILL--------DSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG   73 (298)
Q Consensus         3 ~~~vn~~d-~~G~TpLh~Aa~~g~~~~v~~Ll--------~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g   73 (298)
                      ..++|.+| ..|+||||+|+..|+.++|++|+        +.|+++|..+.    .|+||||+|+..|+.++|++|+++|
T Consensus       114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~----~g~TpL~~A~~~g~~~iv~~Ll~~g  189 (373)
T 2fo1_E          114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC----DENTPLMLAVLARRRRLVAYLMKAG  189 (373)
T ss_dssp             TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC----CCCCHHHHHHHcChHHHHHHHHHCC
Confidence            35788898 79999999999999998888776        88999999887    8999999999999999999999999


Q ss_pred             CCCcccccCCCcHHHHHHhcCcHHHHHHhccCC---CCCCCCCCChhhhhHhhHHHHHHHHHHHHhh---hHHHHHHHhc
Q 041054           74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPAS---AEPLVWPSPLKFISELNQEAKALLENALMEA---NKEREKNILK  147 (298)
Q Consensus        74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~g---a~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~---~~~~~~~ll~  147 (298)
                      ++++.+|..|.||||+|+..|+.+++++|++++   ++          ++..+..|.|+|++|+..+   ..+++++|++
T Consensus       190 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~  259 (373)
T 2fo1_E          190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD----------IEELDRNGMTALMIVAHNEGRDQVASAKLLVE  259 (373)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT----------TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH
T ss_pred             CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC----------hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH
Confidence            999999999999999999999999999999987   45          4566888999999999987   7888877765


Q ss_pred             -CCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHh-hcCCCCCCCC-CCCCCCCccc
Q 041054          148 -GTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALC-CHNKPNPTTA-CLTPPVCPFC  224 (298)
Q Consensus       148 -~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~-~~~~~~~~~~-~~~~~~Cp~c  224 (298)
                       +.++........+      .....+...-.+         ..-.||..++..++..+ +..+..+..+ ||++.++-.+
T Consensus       260 ~g~~~~~~~~~~~~------~~d~~g~t~Lh~---------A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          260 KGAKVDYDGAARKD------SEKYKGRTALHY---------AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             HTCCSSCCSGGGTS------SSSCCCCCTHHH---------HHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCcccccccccC------cccccCCCHHHH---------HHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence             4544321110000      000000011011         11247888888888775 6666555555 9999999999


Q ss_pred             ccccceeEEEEee
Q 041054          225 RSTIAHLVVVKIE  237 (298)
Q Consensus       225 r~~I~~~~~~~~~  237 (298)
                      +..|+++++....
T Consensus       325 ~~~iv~~Ll~~ga  337 (373)
T 2fo1_E          325 RIEVVMYLIQQGA  337 (373)
T ss_dssp             CHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHcCC
Confidence            9999999987543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=5.2e-24  Score=185.28  Aligned_cols=139  Identities=23%  Similarity=0.145  Sum_probs=120.0

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC----------CCCCCCChHHHHHHHcCCHHHHHHHHH---cCCC
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTG----------GYGCPGSTPLHLAARGGSIDCIRELLA---WGAD   75 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~----------~~~~~g~TpLh~A~~~g~~~~v~~Ll~---~gad   75 (298)
                      +|..|+||||+|+..|+.++|++||++|++++..+.          ..+..|.||||+|+..|+.++|++|++   +|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            678999999999999999999999999999998774          111259999999999999999999999   9999


Q ss_pred             CcccccCCCcHHHHHHhcCc---------HHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHh
Q 041054           76 RLHRDVSGRIPYAVALKHKH---------GACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNIL  146 (298)
Q Consensus        76 ~~~~d~~g~tpL~~A~~~~~---------~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll  146 (298)
                      ++.+|..|+||||+|+..++         .+++++|+++|+++....   ..++..+..|.|||++|+..++.+++++|+
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~---~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  253 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTL---KLEEITNRKGLTPLALAASSGKIGVLAYIL  253 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccc---ccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence            99999999999999999888         799999999998732110   111347889999999999999999998887


Q ss_pred             cCCC
Q 041054          147 KGTA  150 (298)
Q Consensus       147 ~~~~  150 (298)
                      +.+.
T Consensus       254 ~~ga  257 (273)
T 2pnn_A          254 QREI  257 (273)
T ss_dssp             HHHT
T ss_pred             HCCC
Confidence            7544

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=4.7e-24  Score=193.07  Aligned_cols=130  Identities=18%  Similarity=0.129  Sum_probs=122.1

Q ss_pred             cccCCCCCCcHHHHHHHcC--ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC-----Ccc
Q 041054            6 VNIRDGRGATPLHLAARQR--RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD-----RLH   78 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad-----~~~   78 (298)
                      ++.+|..|+||||+|+..|  +.++|++|+++|++++..+.    .|+||||+|+..|+.++|++|+++|++     ++.
T Consensus       131 ~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  206 (364)
T 3ljn_A          131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK----ADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY  206 (364)
T ss_dssp             TEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred             cccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence            3448899999999999999  99999999999999999887    899999999999999999999999999     999


Q ss_pred             cccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           79 RDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        79 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +|..|+||||+|+..|+.+++++|+++|++          ++..|..|.|||++|+..++.+++++|++.+
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----------~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGID----------VNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence            999999999999999999999999999999          4667889999999999999999999988754

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.89  E-value=2.1e-24  Score=193.31  Aligned_cols=223  Identities=19%  Similarity=0.121  Sum_probs=146.9

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC--------------
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR--------------   76 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~--------------   76 (298)
                      .+|.|+||.|++.|++++|++||++|+++|.++..   .|+||||+|+..|+.++|++||++|+++              
T Consensus        23 ~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~---~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~   99 (337)
T 4g8k_A           23 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE---GGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILA   99 (337)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCC---CCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence            35778888888888888888888888888877652   4888888888888888888888887754              


Q ss_pred             -------------------cccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhh
Q 041054           77 -------------------LHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEA  137 (298)
Q Consensus        77 -------------------~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~  137 (298)
                                         +..|..|.||||+|+..++.+++++|+++|+++.............+..|.||||+|+..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g  179 (337)
T 4g8k_A          100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  179 (337)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred             HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence                               4567789999999999999999999999999987766655556667778999999999999


Q ss_pred             hHHHHHHHhc--CCCCCCCCCCCCCCCCccccc-ccCC-CcccccccccccceEEe------------CCCchhHHHHHH
Q 041054          138 NKEREKNILK--GTAYSLPSPSHSDVGADDNIS-EASD-TELCCICFEQVCTIEVQ------------DCGHQMCAQCTL  201 (298)
Q Consensus       138 ~~~~~~~ll~--~~~~~~~~p~~~~~~~~~~~~-~~~~-~~~C~IC~~~~~~~~~~------------~CGH~~C~~C~~  201 (298)
                      +.+++++|+.  |+++................. .... .....+.++..+++...            ..|+..+...++
T Consensus       180 ~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          180 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            9999999874  555443221111000000000 0000 00111122222222111            145555555554


Q ss_pred             HH-hhcCCCCCCCC-CCCCCCCcccccccceeEEEEe
Q 041054          202 AL-CCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       202 ~l-~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                      .. ++..+..+..+ ||++.+|-..+..|+++|+...
T Consensus       260 ~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          260 EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             TSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            43 33444444444 8888888888888888887653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.9e-24  Score=182.09  Aligned_cols=132  Identities=17%  Similarity=0.079  Sum_probs=119.1

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI   85 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t   85 (298)
                      .+..+..|.||||+|+..|+.++|++|++.|++++..+.    .|+||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus        14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t   89 (229)
T 2vge_A           14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE----EGITALHNAICGANYSIVDFLITAGANVNSPDSHGWT   89 (229)
T ss_dssp             CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            345566788899999999999999999999999998887    8999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhh-HHHHHHHHHH--HHhhhHHHHHHHhcC-CCC
Q 041054           86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELN-QEAKALLENA--LMEANKEREKNILKG-TAY  151 (298)
Q Consensus        86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~-~~~~t~L~~A--~~~~~~~~~~~ll~~-~~~  151 (298)
                      |||+|+..|+.+++++|+++|+++          +..+ ..|.|||++|  +..++.+++++|++. +++
T Consensus        90 pLh~A~~~g~~~~v~~Ll~~ga~~----------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~  149 (229)
T 2vge_A           90 PLHCAASCNDTVICMALVQHGAAI----------FATTLSDGATAFEKCDPYREGYADCATYLADVEQSM  149 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCT----------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCc----------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence            999999999999999999999994          4443 5899999999  899999998888764 443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.89  E-value=1.7e-23  Score=169.30  Aligned_cols=127  Identities=31%  Similarity=0.325  Sum_probs=116.5

Q ss_pred             CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054            9 RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      ....+.|+||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus        10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E           10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA----SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR   85 (169)
T ss_dssp             ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            345678999999999999999999999999998877    8999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +|+..++.+++++|+++|++          ++..+..+.||||+|+..++.+++++|++.+
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  136 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGAD----------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG  136 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999998          4556778999999999999999999887753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.2e-23  Score=167.99  Aligned_cols=117  Identities=26%  Similarity=0.258  Sum_probs=96.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCCh-HHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGST-PLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~T-pLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+.++|.+|..|+||||+|+ .|+.+++++|+++|++++..+.    .|+| |||+|+..|+.+++++|+++|++++.+|
T Consensus        34 ~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~----~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  108 (156)
T 1bi7_B           34 AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD  108 (156)
T ss_dssp             TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT----TTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred             cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC----CCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccC
Confidence            47889999999999999985 9999999999999999999887    7999 9999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHH
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENA  133 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A  133 (298)
                      ..|.||||+|+..++.+++++|+++|++          ++..+..+.|+.+.+
T Consensus       109 ~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----------~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          109 AWGRLPVDLAEELGHRDVARYLRAAAGG----------TRGSNHARIDAAEGP  151 (156)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHSSCC---------------------------
T ss_pred             CCCCCHHHHHHHhCHHHHHHHHHHcCCC----------CCccCcCcCcccccC
Confidence            9999999999999999999999999999          466777888877643

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.89  E-value=3.2e-24  Score=183.50  Aligned_cols=132  Identities=14%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|++++.. ..|.||||+|+..|+.++|++||+.|++++..+.    .|+||||+|+..|+.++|++|+++|++++.+|.
T Consensus        27 ~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  101 (239)
T 1ycs_B           27 HGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADS  101 (239)
T ss_dssp             -----------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT
T ss_pred             cCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Confidence            35667754 6889999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH-HHHHHH--HHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK-ALLENA--LMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~-t~L~~A--~~~~~~~~~~~ll~~  148 (298)
                      .|+||||+|+..++.+++++|+++|+++          +..+..+. |||++|  +..++.+++++|+..
T Consensus       102 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B          102 DGWTPLHCAASCNNVQVCKFLVESGAAV----------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCT----------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCc----------ceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            9999999999999999999999999994          44555555 999999  677888888887764

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.89  E-value=3.4e-23  Score=181.91  Aligned_cols=193  Identities=18%  Similarity=0.112  Sum_probs=148.8

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV   89 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~   89 (298)
                      +..|.||||+|+..|+.++|++||++|++++..+.    .|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~  112 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA  112 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678999999999999999999999999998887    89999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhccCCCCCCCCC----CChhhhhH--------------------------------------------
Q 041054           90 ALKHKHGACAALLNPASAEPLVWP----SPLKFISE--------------------------------------------  121 (298)
Q Consensus        90 A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~--------------------------------------------  121 (298)
                      |+..|+.+++++|+++|+++....    +|.+....                                            
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            999999999999999999876543    22221100                                            


Q ss_pred             --hhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHH
Q 041054          122 --LNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQ  198 (298)
Q Consensus       122 --~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~  198 (298)
                        .+..|.||||+|+..++.+++++|++.+ ++....   ..           +...-.++..         .||..+..
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d---~~-----------g~tpL~~A~~---------~~~~~~v~  249 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKD---YD-----------GWTPLHAAAH---------WGKEEACR  249 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC---TT-----------CCCHHHHHHH---------TTCHHHHH
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcC---CC-----------CCcHHHHHHh---------cCCHHHHH
Confidence              1234678999999999999888887643 322110   00           0111111111         37888999


Q ss_pred             HHHHHhhcCCCCCCCC-CCCCCCCcccccccc
Q 041054          199 CTLALCCHNKPNPTTA-CLTPPVCPFCRSTIA  229 (298)
Q Consensus       199 C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~  229 (298)
                      .++..+++.+..+..+ ||++.++......|.
T Consensus       250 ~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~  281 (299)
T 1s70_B          250 ILVENLCDMEAVNKVGQTAFDVADEDILGYLE  281 (299)
T ss_dssp             HHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHH
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence            9999988877666666 999999765444433

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.89  E-value=2.7e-23  Score=182.46  Aligned_cols=189  Identities=13%  Similarity=0.075  Sum_probs=145.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|  |+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        53 ~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  126 (285)
T 3kea_A           53 AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD----KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK  126 (285)
T ss_dssp             TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS
T ss_pred             CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCC
Confidence            466777774  99999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CC-CcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCC
Q 041054           82 SG-RIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHS  159 (298)
Q Consensus        82 ~g-~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~  159 (298)
                      .| .||||+|+..++.+++++|+++|++...           ...|.||||+|+..++.+++++|++. +++........
T Consensus       127 ~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~  195 (285)
T 3kea_A          127 TGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-----------LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF  195 (285)
T ss_dssp             SGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC-----------CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-----------ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC
Confidence            99 8999999999999999999999987321           12789999999999999998888764 44332111000


Q ss_pred             CCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          160 DVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       160 ~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                         +          ..-.+...         .||..+...++..+++.+...      ..+++..+..|+++++..
T Consensus       196 ---t----------~~L~~A~~---------~~~~~~v~~Ll~~gad~~~~~------~~a~~~~~~~iv~~Ll~~  243 (285)
T 3kea_A          196 ---I----------PDIKLAID---------NKDIEMLQALFKYDINIYSAN------LENVLLDDAEIAKMIIEK  243 (285)
T ss_dssp             ---C----------TTHHHHHH---------HTCHHHHHHHTTSCBCSTTTT------GGGGTTTCHHHHHHHHHH
T ss_pred             ---C----------hHHHHHHH---------cCCHHHHHHHHHcCCCCCCCC------hhhhhcCCHHHHHHHHHc
Confidence               0          00011111         266667777777655554322      355667777777777654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.89  E-value=6.8e-24  Score=189.93  Aligned_cols=146  Identities=18%  Similarity=0.114  Sum_probs=122.4

Q ss_pred             CCCCccc-CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCC---HHHHHHHHHcC-CCC
Q 041054            2 YARFVNI-RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS---IDCIRELLAWG-ADR   76 (298)
Q Consensus         2 ~~~~vn~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~---~~~v~~Ll~~g-ad~   76 (298)
                      .+.++|. +|..|+||||+|+..|+.++|++||++|++++..+.    .|+||||+|+..|+   .++++.|++++ +++
T Consensus       119 ~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~----~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~  194 (327)
T 1sw6_A          119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----MGESCLVKAVKSVNNYDSGTFEALLDYLYPCL  194 (327)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG
T ss_pred             cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHhcccccHHHHHHHHHhhhccc
Confidence            4688999 899999999999999999999999999999998887    89999999999998   78889999986 789


Q ss_pred             cccccCCCcHHHHHHh----cCcHHHHHHhccC--------------------CCCCCCCC----CChh-----------
Q 041054           77 LHRDVSGRIPYAVALK----HKHGACAALLNPA--------------------SAEPLVWP----SPLK-----------  117 (298)
Q Consensus        77 ~~~d~~g~tpL~~A~~----~~~~~~~~~Ll~~--------------------ga~~~~~~----~~~~-----------  117 (298)
                      +.+|..|+||||+|+.    .++.+++++|++.                    |+++....    +|..           
T Consensus       195 ~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~  274 (327)
T 1sw6_A          195 ILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN  274 (327)
T ss_dssp             GEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHh
Confidence            9999999999999999    8999999999876                    45544332    1111           


Q ss_pred             hhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCC
Q 041054          118 FISELNQEAKALLENALMEANKEREKNILKG-TAY  151 (298)
Q Consensus       118 ~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~  151 (298)
                      .++..+..|.||||+|+..++.+++++|++. +++
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~  309 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP  309 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            2566788899999999999999999888764 443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.89  E-value=1.9e-23  Score=181.67  Aligned_cols=134  Identities=24%  Similarity=0.234  Sum_probs=115.4

Q ss_pred             cCCCCCCcHHHHHHHc---CChHHHHHHHhCCCC-------ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc
Q 041054            8 IRDGRGATPLHLAARQ---RRPECVHILLDSGAL-------VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL   77 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~-------~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~   77 (298)
                      .+|..|+||||+|+..   |+.++|++||++|++       ++......|..|+||||+|+..|+.++|++|+++|++++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~  128 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ  128 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            4588999999999987   999999999999876       333222334489999999999999999999999999999


Q ss_pred             cccc--------------CCCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhh--
Q 041054           78 HRDV--------------SGRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLENALMEAN--  138 (298)
Q Consensus        78 ~~d~--------------~g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~--  138 (298)
                      .++.              .|.||||+|+..|+.+++++|++   +|++          ++..+..|.||||+|+..++  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad----------~~~~d~~g~tpLh~A~~~~~~~  198 (273)
T 2pnn_A          129 AAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD----------ISARDSVGNTVLHALVEVADNT  198 (273)
T ss_dssp             CCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHHHHHHHCCSC
T ss_pred             ccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC----------ceeeCCCCCcHHHHHHHccCcc
Confidence            9997              79999999999999999999999   8998          46678899999999999876  


Q ss_pred             -------HHHHHHHhc-CCCC
Q 041054          139 -------KEREKNILK-GTAY  151 (298)
Q Consensus       139 -------~~~~~~ll~-~~~~  151 (298)
                             .+++++|++ |+++
T Consensus       199 ~~~~~~~~~~v~~Ll~~ga~~  219 (273)
T 2pnn_A          199 VDNTKFVTSMYNEILILGAKL  219 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhhhhc
Confidence                   677776665 4443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.89  E-value=2.1e-23  Score=166.96  Aligned_cols=125  Identities=24%  Similarity=0.164  Sum_probs=115.1

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      ....||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+. |+.+++++|++.|++++.+|..|.||||+|
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNG----FGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----TSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCc----cCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3467999999999999999999999999998877    89999999999 999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           91 LKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        91 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +..++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+.
T Consensus        78 ~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  127 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQAD----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA  127 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccC
Confidence            999999999999999998          45667889999999999999999998887544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=1.2e-23  Score=172.65  Aligned_cols=133  Identities=23%  Similarity=0.171  Sum_probs=106.9

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCCcHHH
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGRIPYA   88 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~   88 (298)
                      |..|+||||+|+..|+.+++++|++ |++++..+.    .|+||||+|+..|+.+++++|+++|++++.+| ..|+||||
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            5688999999999999999999999 999998887    89999999999999999999999999999998 88999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCC----CChhhhhHh--hHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           89 VALKHKHGACAALLNPASAEPLVWP----SPLKFISEL--NQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~~--~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      +|+..++.+++++|+++|+++....    +|.++....  ...+.++|++|...+..+++++|.+
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHHH
Confidence            9999999999999999999964432    122221111  1122344555555566666666643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.89  E-value=8.8e-23  Score=182.53  Aligned_cols=133  Identities=26%  Similarity=0.287  Sum_probs=92.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCC------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD------   75 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad------   75 (298)
                      .|.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++      
T Consensus        80 ~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  155 (351)
T 3utm_A           80 HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL----WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC  155 (351)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            3566777777777777777777777777777777777776665    566777777766666666666665554      


Q ss_pred             --------------------------------------------------------------------------------
Q 041054           76 --------------------------------------------------------------------------------   75 (298)
Q Consensus        76 --------------------------------------------------------------------------------   75 (298)
                                                                                                      
T Consensus       156 ~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~  235 (351)
T 3utm_A          156 HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLR  235 (351)
T ss_dssp             TSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHH
T ss_pred             CCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHH
Confidence                                                                                            


Q ss_pred             ----CcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           76 ----RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        76 ----~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                          ++.+|..|.||||+|+..|+.+++++|+++|++          ++..|..|.||||+|+..++.+++++|++.
T Consensus       236 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----------~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          236 KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----------MNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence                445556666777777777777777777777666          344566777888888888877777776654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=1.2e-22  Score=158.41  Aligned_cols=101  Identities=35%  Similarity=0.428  Sum_probs=96.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus        36 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  111 (136)
T 2jab_A           36 NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA----IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK  111 (136)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCC
Confidence            4788999999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPAS  106 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~g  106 (298)
                      .|.||||+|+..++.+++++|+++|
T Consensus       112 ~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          112 FGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999875

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.88  E-value=5.9e-23  Score=190.18  Aligned_cols=134  Identities=26%  Similarity=0.292  Sum_probs=121.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      ++.++|.+|..|.||||+|+..|+.++|++|+++|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus       234 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  309 (437)
T 1n11_A          234 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK----SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR  309 (437)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT----TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS
T ss_pred             cCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCC
Confidence            4678888999999999999999999999999999999888777    799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .|+||||+|+..|+.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+
T Consensus       310 ~g~t~L~~A~~~g~~~~v~~Ll~~gad----------~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          310 MGYTPLHVASHYGNIKLVKFLLQHQAD----------VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG  367 (437)
T ss_dssp             SCCCHHHHHHHSSCSHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCC----------CCCCCCCCCCHHHHHHHCChHHHHHHHHHCc
Confidence            999999999999999999999999998          4567788999999999999999999888754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=1.8e-23  Score=163.07  Aligned_cols=102  Identities=25%  Similarity=0.271  Sum_probs=98.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCC-CChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP-GSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+.++|.+|..|+||||+|+. |+.+++++|+++|++++..+.    . |+||||+|+..|+.+++++|+++|++++.+|
T Consensus        34 ~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d  108 (136)
T 1d9s_A           34 AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADP----ATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD  108 (136)
T ss_dssp             TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBT----TTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred             cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCC----CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            467899999999999999999 999999999999999999887    7 9999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      ..|.||||+|+..++.+++++|+++|++
T Consensus       109 ~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          109 AWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             SSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.88  E-value=3.1e-23  Score=175.69  Aligned_cols=126  Identities=19%  Similarity=0.100  Sum_probs=59.6

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc-CCCcH
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV-SGRIP   86 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tp   86 (298)
                      ..|..|.||||+|+..|+.+++++|++.|++++..+.    .|.||||+|+..|+.+++++|++.|++++..+. .|.||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~   79 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK----ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP   79 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCC----CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCCh
Confidence            3444445555555555555555555555544444443    445555555555555555555555544443322 24455


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      ||+|+..++.+++++|+++|+++          +..+..+.|||+.|+..++.++++.|++
T Consensus        80 L~~A~~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  130 (240)
T 3eu9_A           80 LHWATRQGHLSMVVQLMKYGADP----------SLIDGEGCSCIHLAAQFGHTSIVAYLIA  130 (240)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT----------TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHcCCCC----------cccCCCCCCHHHHHHHcCHHHHHHHHHh
Confidence            55555555555555555544442          2233344445555555444444444433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=1.8e-23  Score=180.33  Aligned_cols=139  Identities=19%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             CCCcccCC----CCCCcHHHHHH---HcCChHHHHHHHhCCCCcc-------ccCCCCCCCCChHHHHHHHcCCHHHHHH
Q 041054            3 ARFVNIRD----GRGATPLHLAA---RQRRPECVHILLDSGALVC-------ASTGGYGCPGSTPLHLAARGGSIDCIRE   68 (298)
Q Consensus         3 ~~~vn~~d----~~G~TpLh~Aa---~~g~~~~v~~Ll~~ga~~~-------~~~~~~~~~g~TpLh~A~~~g~~~~v~~   68 (298)
                      +.+++..+    ..|+||||+|+   ..|+.++|++|++.|++++       ......|..|+||||+|+..|+.++|++
T Consensus        32 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~  111 (260)
T 3jxi_A           32 KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVEL  111 (260)
T ss_dssp             TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHH
T ss_pred             CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence            45666554    77999999999   6799999999999986632       2222333479999999999999999999


Q ss_pred             HHHcCCCCcccc--------------cCCCcHHHHHHhcCcHHHHHHhcc---CCCCCCCCCCChhhhhHhhHHHHHHHH
Q 041054           69 LLAWGADRLHRD--------------VSGRIPYAVALKHKHGACAALLNP---ASAEPLVWPSPLKFISELNQEAKALLE  131 (298)
Q Consensus        69 Ll~~gad~~~~d--------------~~g~tpL~~A~~~~~~~~~~~Ll~---~ga~~~~~~~~~~~~~~~~~~~~t~L~  131 (298)
                      |+++|++++.++              ..|.||||+|+..|+.+++++|++   +|++          ++..|..|.||||
T Consensus       112 Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~----------~~~~d~~g~TpLh  181 (260)
T 3jxi_A          112 LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----------LRRQDSRGNTVLH  181 (260)
T ss_dssp             HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----------TTCCCTTSCCHHH
T ss_pred             HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----------CcccCCCCCcHHH
Confidence            999999999998              589999999999999999999999   8898          4667889999999


Q ss_pred             HHHHhhh---------HHHHHHHhc-CCCC
Q 041054          132 NALMEAN---------KEREKNILK-GTAY  151 (298)
Q Consensus       132 ~A~~~~~---------~~~~~~ll~-~~~~  151 (298)
                      +|+..++         .+++++|++ |+++
T Consensus       182 ~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          182 ALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             HHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            9997766         577776665 4543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.88  E-value=8.5e-23  Score=165.30  Aligned_cols=123  Identities=22%  Similarity=0.204  Sum_probs=112.7

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCC-ccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           13 GATPLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      +.||||+|+..|+.++++.|++.+.+ ++..+.    .|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE----RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS   77 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT----TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH
Confidence            57899999999999999999999877 676666    8999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ..++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+
T Consensus        78 ~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A           78 TGGYTDIVGLLLERDVD----------INIYDWNGGTPLLYAVRGNHVKCVEALLARG  125 (172)
T ss_dssp             HTTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999998          4567788999999999999999999887643

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.88  E-value=4.3e-23  Score=165.93  Aligned_cols=128  Identities=26%  Similarity=0.222  Sum_probs=114.1

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      ..|..|.||||.|+..|+.++|+.|++. +.+++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~   78 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG----RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVP   78 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc----CCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCH
Confidence            3577899999999999999999999985 555555555    79999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ||+|+..++.+++++|+++|++          ++..+..+.||||+|+..++.+++++|++.+
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  131 (165)
T 3twr_A           79 LHNACSYGHYEVAELLVKHGAV----------VNVADLWKFTPLHEAAAKGKYEICKLLLQHG  131 (165)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHcCcHHHHHHHHhCCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999998          4556778999999999999999998887653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.88  E-value=5.5e-23  Score=163.41  Aligned_cols=122  Identities=26%  Similarity=0.272  Sum_probs=112.2

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHh
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK   92 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~   92 (298)
                      ..||||.|+..|+.++|++|+++|++++. +.    .|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFTT-DW----LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCCC-CT----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCCc-CC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            46899999999999999999999998763 33    79999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           93 HKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        93 ~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      .++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+
T Consensus        77 ~~~~~~v~~Ll~~g~~----------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           77 EGHANIVEVLLKHGAD----------VNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HTCHHHHHHHHTTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHcCCC----------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999998          4566788999999999999999999887653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.88  E-value=1.1e-22  Score=165.89  Aligned_cols=125  Identities=19%  Similarity=0.237  Sum_probs=113.0

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV   89 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~   89 (298)
                      ..+.++||.|+..|+.++|++|++. +.+++..+.    .|+||||+|+..|+.+++++|++.|++++.+|..|.||||+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD----HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            4688999999999999999999998 677887776    89999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      |+..++.+++++|+++|++          ++..+..|.||||+|+..++.+++++|++.+
T Consensus        79 A~~~~~~~~v~~Ll~~g~~----------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKAD----------INAVNEHGNVPLHYACFWGQDQVAEDLVANG  128 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCC----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            9999999999999999998          4667788999999999999999999887653

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=2.8e-23  Score=157.13  Aligned_cols=98  Identities=40%  Similarity=0.505  Sum_probs=94.4

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054            7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      ..+|.+|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----DGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP   78 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----SSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----CCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence            36799999999999999999999999999999998887    89999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCC
Q 041054           87 YAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      ||+|+..++.+++++|+++|++
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~  100 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGAD  100 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSS
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999998

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.88  E-value=5.5e-23  Score=176.50  Aligned_cols=134  Identities=23%  Similarity=0.156  Sum_probs=113.3

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCCcHHH
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGRIPYA   88 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~   88 (298)
                      +..|.||||+|+..|+.++|++||+ |+++|..+.    .|+||||+|+..|+.++|++|+++|++++.+| ..|+||||
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----NGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT----TSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence            3578999999999999999999999 999999887    89999999999999999999999999999998 78999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCC----CChhhhhH--hhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWP----SPLKFISE--LNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~----~~~~~~~~--~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      +|+..|+.+++++|+++|+++....    +|.++...  ....+.++|++|+..++.+++++|++.
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999999999999999975542    23322221  123345677777788999988888763

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=5.2e-25  Score=187.53  Aligned_cols=139  Identities=19%  Similarity=0.140  Sum_probs=120.6

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-c
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-V   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~   81 (298)
                      +.++|.+|..|+||||+|+..|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.++ .
T Consensus        44 g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~----~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~  119 (229)
T 2vge_A           44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS----HGWTPLHCAASCNDTVICMALVQHGAAIFATTLS  119 (229)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSS
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCC
Confidence            678999999999999999999999999999999999999887    89999999999999999999999999999987 5


Q ss_pred             CCCcHHHHH--HhcCcHHHHHHhccCCCCCCCCCCC--------------------hh--hhhHhhHHHHHHHHHHHHhh
Q 041054           82 SGRIPYAVA--LKHKHGACAALLNPASAEPLVWPSP--------------------LK--FISELNQEAKALLENALMEA  137 (298)
Q Consensus        82 ~g~tpL~~A--~~~~~~~~~~~Ll~~ga~~~~~~~~--------------------~~--~~~~~~~~~~t~L~~A~~~~  137 (298)
                      .|+||||+|  +..++.+++++|+++|+++......                    ..  .++.+|.+|.|||++|+..+
T Consensus       120 ~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             TTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             CCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcC
Confidence            999999999  9999999999999998876543210                    00  13455777888888888888


Q ss_pred             hHHHHHHH
Q 041054          138 NKEREKNI  145 (298)
Q Consensus       138 ~~~~~~~l  145 (298)
                      +.++++..
T Consensus       200 ~~~~v~~~  207 (229)
T 2vge_A          200 QEGYVPRN  207 (229)
T ss_dssp             EEEEEEGG
T ss_pred             Ccceeehh
Confidence            87766543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.87  E-value=2.1e-22  Score=160.18  Aligned_cols=123  Identities=21%  Similarity=0.098  Sum_probs=113.4

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           13 GATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      |.||||+|+..|+.+++++|++. +.+++..+.    .|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC----CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            56999999999999999999999 447887776    89999999 9999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           92 KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      ..|+.+++++|+++|+++          +..+..|.||||+|+..++.+++++|++.++
T Consensus        77 ~~~~~~~v~~Ll~~g~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  125 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADV----------NVPDGTGALPIHLAVQEGHTAVVSFLAAESD  125 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSC
T ss_pred             HcCcHHHHHHHHHcCCCC----------CCcCCCCCcHHHHHHHhChHHHHHHHHhccC
Confidence            999999999999999984          5567789999999999999999999987743

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.87  E-value=7.2e-22  Score=176.83  Aligned_cols=133  Identities=28%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHh-CCCCccccCCC---------------------------------CCCCCC
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLD-SGALVCASTGG---------------------------------YGCPGS   51 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~~~~---------------------------------~~~~g~   51 (298)
                      .+..+..|.||||+|+..|+.++|++||+ .|++++..+..                                 .|..|+
T Consensus       161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~  240 (337)
T 4g8k_A          161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  240 (337)
T ss_dssp             ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGC
T ss_pred             cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCC
Confidence            34445555555555555555555555553 35555544320                                 112567


Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHH
Q 041054           52 TPLHLAARGGSIDCIRELLAW-GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALL  130 (298)
Q Consensus        52 TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L  130 (298)
                      ||||+|+..|+.+++++|++. |++++.+|..|+||||+|+..|+.+++++|+++|+++..               ++||
T Consensus       241 t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~---------------~~~L  305 (337)
T 4g8k_A          241 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC---------------GDLV  305 (337)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTT---------------CCHH
T ss_pred             CHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---------------CCHH
Confidence            777777777777777777764 677777777777777777777777777777777776421               2367


Q ss_pred             HHHHHhhhHHHHHHHhc-CCCCCC
Q 041054          131 ENALMEANKEREKNILK-GTAYSL  153 (298)
Q Consensus       131 ~~A~~~~~~~~~~~ll~-~~~~~~  153 (298)
                      ++|+..++.+++++|++ |+++..
T Consensus       306 ~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          306 MTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC
Confidence            77777777776666554 444443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=5.2e-22  Score=172.25  Aligned_cols=128  Identities=30%  Similarity=0.281  Sum_probs=119.0

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCcccccCCC
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGS----IDCIRELLAWGADRLHRDVSGR   84 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~----~~~v~~Ll~~gad~~~~d~~g~   84 (298)
                      +..|.||||+|+..|+.+++++|+++ |++++..+.    .|.||||+|+..++    .+++++|+++|++++.+|..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~  220 (285)
T 1wdy_A          145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN----MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT----TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCC----CCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCC
Confidence            88899999999999999999999998 999998887    89999999999999    9999999999999999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCC
Q 041054           85 IPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAY  151 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~  151 (298)
                      ||||+|+..++.+++++|++ +|++          ++..+..|.|||++|+..++.+++++|++ |+++
T Consensus       221 t~L~~A~~~~~~~~v~~Ll~~~g~~----------~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~  279 (285)
T 1wdy_A          221 TPLILAVEKKHLGLVQRLLEQEHIE----------INDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             cHHHHHHHcCCHHHHHHHHhccCCC----------ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC
Confidence            99999999999999999999 7888          46678899999999999999999888876 4543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=1e-21  Score=149.95  Aligned_cols=102  Identities=44%  Similarity=0.592  Sum_probs=98.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|.||||+|+..++.+++++|+++|++++..+.    .|.||||+|+..++.+++++|+++|++++.+|..
T Consensus        25 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  100 (126)
T 1n0r_A           25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN  100 (126)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCC----CCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC
Confidence            578899999999999999999999999999999999998887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      |.|||++|+..++.+++++|+++|++
T Consensus       101 g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          101 GRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999985

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.86  E-value=3.9e-22  Score=168.87  Aligned_cols=123  Identities=27%  Similarity=0.243  Sum_probs=75.2

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           11 GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      ..|+||||+|+..|+.+++++|++.|++++..+.    .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus        74 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a  149 (240)
T 3eu9_A           74 DLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG----EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA  149 (240)
T ss_dssp             TTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCC----CCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHH
Confidence            3366666666666666666666666666666554    566666666666666666666666666666666666666666


Q ss_pred             HhcCc-HHHHHHhccCCCCCCCCCCChhhhhHhhH-HHHHHHHHHHHhhhHHHHHHHhc
Q 041054           91 LKHKH-GACAALLNPASAEPLVWPSPLKFISELNQ-EAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        91 ~~~~~-~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~-~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      +..++ .+++++|++.|+++.          ..+. .+.||||+|+..++.+++++|++
T Consensus       150 ~~~~~~~~~~~~L~~~~~~~~----------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (240)
T 3eu9_A          150 AYRTHSVDPTRLLLTFNVSVN----------LGDKYHKNTALHWAVLAGNTTVISLLLE  198 (240)
T ss_dssp             HHHCCSSTTHHHHHHTTCCTT----------CCCTTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHhcCCCcc----------hhhccCCCcHHHHHHHcCCHHHHHHHHH
Confidence            64443 566666666666532          2222 44556666666666555554443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.86  E-value=1.1e-22  Score=180.14  Aligned_cols=117  Identities=24%  Similarity=0.237  Sum_probs=101.4

Q ss_pred             CCCccc------CCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054            3 ARFVNI------RDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG   73 (298)
Q Consensus         3 ~~~vn~------~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g   73 (298)
                      +.+++.      .|..|+||||+|+..   ++.++|++||++|+++|..+.    .|+||||+|+..|+.++|++|+++|
T Consensus       174 g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~----~G~TpLh~A~~~g~~~~v~~Ll~~g  249 (301)
T 2b0o_E          174 GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA----DGNTALHYAALYNQPDCLKLLLKGR  249 (301)
T ss_dssp             TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            567777      699999999999997   899999999999999999887    8999999999999999999999999


Q ss_pred             CCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhH
Q 041054           74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANK  139 (298)
Q Consensus        74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~  139 (298)
                      ++++.+|..|.|||++|+..++.+++++|+++|++                .+.||||+|+..+..
T Consensus       250 ad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          250 ALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             CCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------TTSSCCC--------
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------CCCChhHHHHhcCCc
Confidence            99999999999999999999999999999988764                357889988877653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.86  E-value=9.5e-23  Score=174.30  Aligned_cols=165  Identities=15%  Similarity=0.051  Sum_probs=104.2

Q ss_pred             CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHH
Q 041054           10 DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAV   89 (298)
Q Consensus        10 d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~   89 (298)
                      +..|.||||.|+..++.+.++.||++|++++...     .|.||||+|+..|+.++|++|++.|++++.+|..|.||||+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~-----~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~   76 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-----LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHN   76 (239)
T ss_dssp             ----------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccCc-----hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            4579999999999999999999999999998653     68999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCCCCCccccc
Q 041054           90 ALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSDVGADDNIS  168 (298)
Q Consensus        90 A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~~~  168 (298)
                      |+..|+.+++++|+++|++          ++..|..|.||||+|+..++.+++++|++. +++.......          
T Consensus        77 A~~~g~~~~v~~Ll~~ga~----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~----------  136 (239)
T 1ycs_B           77 AVCAGHTEIVKFLVQFGVN----------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD----------  136 (239)
T ss_dssp             HHHHTCHHHHHHHHHHTCC----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS----------
T ss_pred             HHHcCCHHHHHHHHHcCCC----------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC----------
Confidence            9999999999999999998          566788899999999999999999988765 4332211100          


Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCC
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKP  209 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~  209 (298)
                         ....-.+|..       ..-||..|...++..++....
T Consensus       137 ---~~t~l~~a~~-------~~~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          137 ---MQTAADKCEE-------MEEGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             ---CCCHHHHCCS-------SSTTCCCHHHHHHHHHHHTTT
T ss_pred             ---CcchHHHHHH-------hhhccHHHHHHHHHhhhcccc
Confidence               0011112210       112888899999999887764

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=4.6e-22  Score=180.68  Aligned_cols=131  Identities=24%  Similarity=0.186  Sum_probs=117.0

Q ss_pred             ccCCCCCCcHHHHHHHc-CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054            7 NIRDGRGATPLHLAARQ-RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI   85 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t   85 (298)
                      +..+..+.|+||+|+.. ++.++|++||++|++++..+..  ..|.||||+|+..|+.++|++|+++|++++.+|..|+|
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~--~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~T  270 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGG--QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRG  270 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTT--TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccc--cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            33445667899999999 9999999999999999987721  17999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           86 PYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        86 pL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      |||+|+..++.+++++|+++|++          ++..|.+|.|||++|+..++.+++++|+...
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Gad----------~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGAD----------LGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCC----------CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999          4667889999999999999999999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.7e-21  Score=170.66  Aligned_cols=128  Identities=18%  Similarity=0.144  Sum_probs=114.8

Q ss_pred             CCcHHHHHHHcCChHHHHHHHhCCCCcccc--CCCCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054           13 GATPLHLAARQRRPECVHILLDSGALVCAS--TGGYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHRDVSGRIPY   87 (298)
Q Consensus        13 G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~--~~~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tpL   87 (298)
                      ..++|+.|+..|+.+.++.|++.|++++..  ....|..|+||||+|+..   |+.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            357899999999999999999999997654  222234799999999999   899999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           88 AVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        88 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      |+|+..|+.+++++|+++|++          ++..|.+|.|||++|+..++.+++++|++.+.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad----------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS----------IEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----------CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            999999999999999999999          46678899999999999999999999887654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=3.2e-21  Score=168.86  Aligned_cols=100  Identities=29%  Similarity=0.387  Sum_probs=95.7

Q ss_pred             cccCCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            6 VNIRDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      ++..|..|+||||+|+..   |+.++|++|+++|+++|.++.    .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~----~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~  237 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAECLKLLLRGKASIEIANES  237 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC
Confidence            566689999999999999   899999999999999999887    8999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEP  109 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~  109 (298)
                      |.||||+|+..|+.+++++|+++|++.
T Consensus       238 g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          238 GETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            999999999999999999999998874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.84  E-value=6.4e-21  Score=143.33  Aligned_cols=95  Identities=33%  Similarity=0.429  Sum_probs=85.8

Q ss_pred             CCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Q 041054            4 RFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSG   83 (298)
Q Consensus         4 ~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g   83 (298)
                      ..++..|.+|.||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~----~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g   90 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK----NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG   90 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCC
Confidence            44667889999999999999999999999999999998887    89999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHh
Q 041054           84 RIPYAVALKHKHGACAALL  102 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~L  102 (298)
                      +||||+|+..++.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=5.1e-21  Score=169.45  Aligned_cols=129  Identities=19%  Similarity=0.156  Sum_probs=114.0

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCcH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      ...++||.|+..|+.+.|+.|++.|++++....  ..+..|+||||+|+..   ++.+++++|+++|++++.+|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            345779999999999999999999999987310  0123799999999997   89999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      ||+|+..|+.+++++|+++|+++          +.+|..|.|||++|+..++.+++++|++.+.
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~----------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga  283 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALV----------GTVNEAGETALDIARKKHHKECEELLEQAQA  283 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCC----------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCC----------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC
Confidence            99999999999999999999994          5678889999999999999999998877543

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.84  E-value=3.5e-21  Score=181.82  Aligned_cols=127  Identities=20%  Similarity=0.182  Sum_probs=98.2

Q ss_pred             CcHHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHH---cCCHHHHHHHHHcCCCCcccccCCCcHHH
Q 041054           14 ATPLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAAR---GGSIDCIRELLAWGADRLHRDVSGRIPYA   88 (298)
Q Consensus        14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~---~g~~~~v~~Ll~~gad~~~~d~~g~tpL~   88 (298)
                      .+.||.|+..|+.+.|+.||+.|+++|....  ..|..|+||||+|+.   .|+.++|++|+++|+++|.+|..|+||||
T Consensus       133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHH
Confidence            3678888888888888888888888876611  112368888888855   78888888888888888888888888888


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +|+..|+.+++++|+++|++          ++..|.+|.||||+|+..++.+++++|++.+.
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~----------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga  264 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRAL----------VGTVNEAGETALDIARKKHHKECEELLEQAQA  264 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCC----------CSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            88888888888888888887          35567778888888888888887777766443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.84  E-value=3.2e-22  Score=179.03  Aligned_cols=121  Identities=15%  Similarity=-0.012  Sum_probs=108.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCC---hHHHHHHHhCC-CCccccCCCCCCCCChHHHHHHH----cCCHHHHHHHHHcC
Q 041054            2 YARFVNIRDGRGATPLHLAARQRR---PECVHILLDSG-ALVCASTGGYGCPGSTPLHLAAR----GGSIDCIRELLAWG   73 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~---~~~v~~Ll~~g-a~~~~~~~~~~~~g~TpLh~A~~----~g~~~~v~~Ll~~g   73 (298)
                      .|+++|.+|..|+||||+|+..|+   .++++.|++.+ ++++..+.    .|+||||+|+.    .|+.+++++|++.+
T Consensus       153 ~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~----~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          153 HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS----MNRTILHHIIITSGMTGCSAAAKYYLDIL  228 (327)
T ss_dssp             TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT----TCCCHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCC----CCCCHHHHHHHHccccccHHHHHHHHHHH
Confidence            578999999999999999999998   78888888886 77888887    89999999999    99999999999874


Q ss_pred             C---------------------------------------------CCcccccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           74 A---------------------------------------------DRLHRDVSGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        74 a---------------------------------------------d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      +                                             +++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       229 ~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          229 MGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             HHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             HHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3                                             5788899999999999999999999999999999


Q ss_pred             CCCCCCChhhhhHhhHHHHHHHHHHHHh
Q 041054          109 PLVWPSPLKFISELNQEAKALLENALME  136 (298)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~t~L~~A~~~  136 (298)
                                ++.+|..|+||||+|+..
T Consensus       309 ----------~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          309 ----------PFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             ----------TTCCCTTSCCGGGGTCC-
T ss_pred             ----------CcccCCCCCCHHHHHHhc
Confidence                      466788999999998754

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=6.4e-21  Score=145.88  Aligned_cols=90  Identities=29%  Similarity=0.337  Sum_probs=84.2

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+..|+.+++++|+++|++++.++.    .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        29 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  104 (123)
T 3aaa_C           29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP  104 (123)
T ss_dssp             TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            4678999999999999999999999999999999999999887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCc
Q 041054           82 SGRIPYAVALKHKH   95 (298)
Q Consensus        82 ~g~tpL~~A~~~~~   95 (298)
                      .|.|||++|...+.
T Consensus       105 ~g~t~l~~A~~~~~  118 (123)
T 3aaa_C          105 DGLTAFEATDNQAI  118 (123)
T ss_dssp             TSCCHHHHCCCHHH
T ss_pred             CCCCHHHHhCCHHH
Confidence            99999999954433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=2.6e-21  Score=150.79  Aligned_cols=103  Identities=28%  Similarity=0.370  Sum_probs=93.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      ++.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        32 ~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  107 (137)
T 3c5r_A           32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY----QNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI  107 (137)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCG----GGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Confidence            4678999999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      .|.|||++|+..+..+++++|.+.+..
T Consensus       108 ~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          108 FGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             TSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CCCCHHHHHhhccHHHHHhhccccccC
Confidence            999999999999999999988776553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.83  E-value=7.2e-21  Score=160.41  Aligned_cols=106  Identities=24%  Similarity=0.223  Sum_probs=92.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD   80 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d   80 (298)
                      .+.++|.+|..|+||||+|+..|+.++|++|+++ |++++..+.    .|+||||+|+..|+.++|++|+++|++++.+|
T Consensus        95 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~----~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  170 (222)
T 3ehr_A           95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK----LGDTALHAAAWKGYADIVQLLLAKGARTDLRN  170 (222)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCT----TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCC
T ss_pred             CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCC----CCCCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            4678999999999999999999999999999999 999999887    89999999999999999999999999999999


Q ss_pred             cCCCcHHHHHHhcCcHHHHHHhccCCCCCCC
Q 041054           81 VSGRIPYAVALKHKHGACAALLNPASAEPLV  111 (298)
Q Consensus        81 ~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~  111 (298)
                      ..|.|||++|+..++.++++.|+..++....
T Consensus       171 ~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          171 IEKKLAFDMATNAACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             TTSCCHHHHCCSHHHHHHHC-----------
T ss_pred             CCCCCHHHHhcchhHHHHHHHHhccchhhhc
Confidence            9999999999999999999999999997543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=2.3e-20  Score=169.56  Aligned_cols=123  Identities=26%  Similarity=0.242  Sum_probs=97.8

Q ss_pred             CCCCcccCC--CCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc
Q 041054            2 YARFVNIRD--GRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR   79 (298)
Q Consensus         2 ~~~~vn~~d--~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~   79 (298)
                      .|+++|..|  ..|+||||+|+..|+.++|++||++|+++|..+.    .|+||||+|+..|+.++|++|+++|++++.+
T Consensus       222 ~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~----~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~  297 (368)
T 3jue_A          222 HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS----AGRGPLHHATILGHTGLACLFLKRGADLGAR  297 (368)
T ss_dssp             TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----CCCCHHHHHHHcCcHHHHHHHHHCcCCCCCc
Confidence            478899998  8999999999999999999999999999998887    8999999999999999999999999999999


Q ss_pred             ccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054           80 DVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALM  135 (298)
Q Consensus        80 d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~  135 (298)
                      |..|.||||+|+..++.+++++|+..+.....       ....+..+.++++.+..
T Consensus       298 d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~-------~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          298 DSEGRDPLTIAMETANADIVTLLRLAKMREAE-------AAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------------
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-------ccccCCCCCCHHHHHHH
Confidence            99999999999999999999999988754211       12345556677766543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.82  E-value=3.1e-20  Score=162.20  Aligned_cols=100  Identities=28%  Similarity=0.250  Sum_probs=95.3

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCccccc
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLA-WGADRLHRDV   81 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~-~gad~~~~d~   81 (298)
                      +.+++..|..|+||||+|+..|+.++|++||++|+++|.++.    .|+||||+|+..|+.++|++|++ .|++++.+|.
T Consensus       173 g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~----~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~  248 (276)
T 4hbd_A          173 GNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD----DGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR  248 (276)
T ss_dssp             SCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT
T ss_pred             CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----CCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC
Confidence            467788899999999999999999999999999999999887    89999999999999999999999 8999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPAS  106 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~g  106 (298)
                      .|.||||+|+..|+.+++++|+++.
T Consensus       249 ~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          249 DGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            9999999999999999999999864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.82  E-value=4.1e-20  Score=151.37  Aligned_cols=93  Identities=27%  Similarity=0.270  Sum_probs=85.8

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.++|.+|..|+||||+|+..|+.+++++|+++|++++..+..   .|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        66 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~---~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~  142 (183)
T 3deo_A           66 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR---GGLTALHMAAGYVRPEVVEALVELGADIEVEDER  142 (183)
T ss_dssp             TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS---SSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT
T ss_pred             cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC---CCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCC
Confidence            5689999999999999999999999999999999999988732   7999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHH
Q 041054           83 GRIPYAVALKHKHGAC   98 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~   98 (298)
                      |.||||+|+..++.+.
T Consensus       143 g~tpl~~A~~~~~~~~  158 (183)
T 3deo_A          143 GLTALELAREILKTTP  158 (183)
T ss_dssp             SCCHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHhccCcc
Confidence            9999999998755433

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.82  E-value=6.6e-21  Score=157.03  Aligned_cols=100  Identities=15%  Similarity=0.094  Sum_probs=93.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCC------hHHHHHHHhCCCCccccCCCCCCCCC-hHHHHHHHcC-----CHHHHHHH
Q 041054            2 YARFVNIRDGRGATPLHLAARQRR------PECVHILLDSGALVCASTGGYGCPGS-TPLHLAARGG-----SIDCIREL   69 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~------~~~v~~Ll~~ga~~~~~~~~~~~~g~-TpLh~A~~~g-----~~~~v~~L   69 (298)
                      .|++||.+|..|+||||+|+..++      .+++++||++|+++|.++.    .|+ ||||+|+..+     +.+++++|
T Consensus        64 ~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~----~g~ttpLh~A~~~~~~~~~~~~iv~~L  139 (186)
T 3t8k_A           64 KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK----PYKIVVFKNIFNYFVDENEMIPLYKLI  139 (186)
T ss_dssp             TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG----GGTBCTTGGGGGCCSCHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC----CcCchHHHHHHHcCCChhhHHHHHHHH
Confidence            589999999999999999999987      5889999999999999988    899 9999999944     46799999


Q ss_pred             HH-cCCCCcccccCCCcHHHHHHhcCcHHHHHHhccC
Q 041054           70 LA-WGADRLHRDVSGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        70 l~-~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                      ++ +|++++.+|..|.||||+|+..++.+++++|.++
T Consensus       140 l~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             HTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            99 9999999999999999999999999999999876

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.81  E-value=8.9e-20  Score=156.43  Aligned_cols=100  Identities=26%  Similarity=0.267  Sum_probs=89.5

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.++|.+|..|+||||+|+..|+.++|++|+++|++++..+..   .|+||||+|+..|+.++|++|+++|++++.+|..
T Consensus        67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~  143 (244)
T 3ui2_A           67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMR---GGLTALHMAAGYVRPEVVEALVELGADIEVEDER  143 (244)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS---SCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Confidence            5689999999999999999999999999999999999988832   7999999999999999999999999999999999


Q ss_pred             CCcHHHHHHh----------------cCcHHHHHHhccC
Q 041054           83 GRIPYAVALK----------------HKHGACAALLNPA  105 (298)
Q Consensus        83 g~tpL~~A~~----------------~~~~~~~~~Ll~~  105 (298)
                      |.||||+|+.                .|+.+++++|+++
T Consensus       144 g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             CCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            9999999984                4556666666553

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.80  E-value=1.3e-20  Score=171.69  Aligned_cols=130  Identities=11%  Similarity=0.019  Sum_probs=106.5

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCC---cccccCCC
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADR---LHRDVSGR   84 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~---~~~d~~g~   84 (298)
                      .++.+++||||+|+..|+.++|++|+++|+.....+ ..+..|.||||+|+..|+.++|++|+++|+++   +..+.+ .
T Consensus        87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~-~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH-HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            355677899999999999999999999998322111 11125789999999999999999999999863   333333 8


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhH--hhHHHHHHHHHHH-HhhhHHHHHHHhcCC
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISE--LNQEAKALLENAL-MEANKEREKNILKGT  149 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~--~~~~~~t~L~~A~-~~~~~~~~~~ll~~~  149 (298)
                      ||||+|+..|+.+++++|+++|++          +..  .+..|.|||++|+ ..++.+++++|++.+
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~----------~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPT----------EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGG----------GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCc----------cchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            999999999999999999999997          455  8899999999999 999999999998744

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=7.5e-20  Score=132.99  Aligned_cols=91  Identities=33%  Similarity=0.466  Sum_probs=84.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHH
Q 041054           49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKA  128 (298)
Q Consensus        49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t  128 (298)
                      .|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++          ++..|.+|.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~t   70 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----------VNAKDKNGRT   70 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------CCccCCCCCC
Confidence            389999999999999999999999999999999999999999999999999999999998          4667888999


Q ss_pred             HHHHHHHhhhHHHHHHHhcCC
Q 041054          129 LLENALMEANKEREKNILKGT  149 (298)
Q Consensus       129 ~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      ||++|+..++.+++++|++.+
T Consensus        71 ~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           71 PLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999887654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.75  E-value=9.6e-20  Score=165.93  Aligned_cols=120  Identities=12%  Similarity=0.081  Sum_probs=105.0

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhCCCCc---cccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcc--cccC
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDSGALV---CASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLH--RDVS   82 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~---~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~--~d~~   82 (298)
                      ..|..|.||||+|+..|+.++|++|+++|+++   +....     ++||||+|+..|+.++|++|+++|++++.  .|..
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-----~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~  197 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-----NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE  197 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-----HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-----CCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCC
Confidence            44567889999999999999999999999863   33332     38999999999999999999999999988  8999


Q ss_pred             CCcHHHHHH-hcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           83 GRIPYAVAL-KHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        83 g~tpL~~A~-~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      |.||||+|+ ..|+.+++++|+++|+                 .+.|+|+.|+..++.+++++|++.+
T Consensus       198 g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------------~~~taL~~Aa~~g~~evv~lL~~~g  248 (376)
T 2aja_A          198 NYYAFRWAAVGRGHHNVINFLLDCPV-----------------MLAYAEIHEFEYGEKYVNPFIARHV  248 (376)
T ss_dssp             HHHHHHHHHSTTCCHHHHHHHTTSHH-----------------HHHHHHHCTTTTTTTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHhCCC-----------------ccchHHHHHHHCCCHHHHHHHHhcC
Confidence            999999999 9999999999998643                 3889999999999999999887653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=1.2e-17  Score=125.21  Aligned_cols=88  Identities=26%  Similarity=0.319  Sum_probs=83.2

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHH
Q 041054           48 CPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAK  127 (298)
Q Consensus        48 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  127 (298)
                      ..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++          ++..+..|.
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----------~~~~d~~g~   91 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----------VXAQDKFGK   91 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSC
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------ccccccCCC
Confidence            3799999999999999999999999999999999999999999999999999999999998          466788899


Q ss_pred             HHHHHHHHhhhHHHHHHH
Q 041054          128 ALLENALMEANKEREKNI  145 (298)
Q Consensus       128 t~L~~A~~~~~~~~~~~l  145 (298)
                      |||++|+..++.+++++|
T Consensus        92 tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           92 TAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHh
Confidence            999999999999998876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.69  E-value=8.9e-18  Score=126.58  Aligned_cols=96  Identities=27%  Similarity=0.355  Sum_probs=87.3

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHH
Q 041054           47 GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEA  126 (298)
Q Consensus        47 ~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~  126 (298)
                      |..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++          ++..+..|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------~~~~d~~g   75 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----------VNARSKDG   75 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----------TTCCCTTC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----------CcccCCCC
Confidence            34899999999999999999999999999999999999999999999999999999999998          45667889


Q ss_pred             HHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054          127 KALLENALMEANKEREKNILK-GTAYS  152 (298)
Q Consensus       127 ~t~L~~A~~~~~~~~~~~ll~-~~~~~  152 (298)
                      .|||++|+..++.+++++|++ |+++.
T Consensus        76 ~tpl~~A~~~~~~~~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           76 NTPEHLAKKNGHHEIVKLLDAKGADVN  102 (115)
T ss_dssp             CCTTHHHHTTTCHHHHHHHHTTSSSHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCC
Confidence            999999999999999888876 45443

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=2.7e-09  Score=72.30  Aligned_cols=49  Identities=20%  Similarity=0.652  Sum_probs=43.3

Q ss_pred             CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      +...|.||++...++.+.||||. +|..|+..+               ..||+||..|...+..+
T Consensus        14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF---------------QQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC---------------SSCTTTCCCCCCEECCC
T ss_pred             CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC---------------CCCCCCCcchhceEEee
Confidence            46789999999999999999999 799999866               78999999999876544

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=3e-09  Score=71.23  Aligned_cols=53  Identities=28%  Similarity=0.531  Sum_probs=44.4

Q ss_pred             CCcccccccccccceEEe--CCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          172 DTELCCICFEQVCTIEVQ--DCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~--~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      +...|.||++...+..+.  ||||. +|..|+..+...           ...||+||+.|...+...
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-----------~~~CPiCR~~i~~~i~i~   62 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-----------NKPCPVCRQPIQMIVLTY   62 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-----------TCCCTTTCCCCCEEEEEE
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-----------CCcCCCcCcchhceEeee
Confidence            456899999999999887  99999 599999888432           257999999999877665

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.74  E-value=4.7e-09  Score=69.98  Aligned_cols=54  Identities=24%  Similarity=0.507  Sum_probs=44.1

Q ss_pred             CCcccccccccccceEEe--CCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054          172 DTELCCICFEQVCTIEVQ--DCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~--~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                      ....|.||++...+..+.  ||||. +|..|+..+....           ..||+||..|...+..+.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----------~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-----------ASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-----------CBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-----------CcCCCcCchhhceEEEec
Confidence            356899999998877666  99999 6999999884322           589999999998877653

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.59  E-value=1e-08  Score=70.70  Aligned_cols=49  Identities=33%  Similarity=0.775  Sum_probs=42.6

Q ss_pred             CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      +...|.||++......+.||||. +|..|+..+               ..||+||..|...+.++
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~   72 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQKIL   72 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC---------------SBCTTTCCBCSEEEECB
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC---------------ccCCCcCcCccCcEEEe
Confidence            45789999999999999999999 899999554               78999999999876544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=1e-07  Score=65.29  Aligned_cols=55  Identities=22%  Similarity=0.629  Sum_probs=43.6

Q ss_pred             cccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          168 SEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       168 ~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ....+...|.||++........+|||.||..|+..+...        ......||+||..|..
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--------~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET--------SCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS--------SCSCCCCSSSCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc--------CCCCCCCCCCCCcCCc
Confidence            344567899999999999888999999999999888331        1234689999988764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=5.1e-09  Score=72.45  Aligned_cols=48  Identities=33%  Similarity=0.786  Sum_probs=41.5

Q ss_pred             CCCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      .+...|.||++....+.+.||||. +|..|+..+               ..||+||..|...+.
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~   71 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV---------------DKCPMCYTVITFKQK   71 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC---------------SBCTTTCCBCCCCCB
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC---------------CCCccCCceecCcEE
Confidence            345789999999999999999999 899999665               789999999987543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.57  E-value=1.8e-08  Score=70.33  Aligned_cols=49  Identities=35%  Similarity=0.830  Sum_probs=42.8

Q ss_pred             CCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      +...|.||++...++.+.||||. +|..|+..+               +.||+||..|...+...
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~---------------~~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL---------------QSCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC---------------SBCTTTCCBCCEEEECB
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc---------------CcCCCCCchhhCeEEEE
Confidence            34689999999999999999999 799999655               69999999999976554

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=6.4e-08  Score=66.01  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=41.3

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..+...|.||++........+|||.||..|+..+.           .....||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~-----------~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGAS-----------WLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCT-----------TCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHH-----------HCCCcCcCcCchhCH
Confidence            34567899999999999999999999999997762           223689999988864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=1e-07  Score=64.69  Aligned_cols=51  Identities=27%  Similarity=0.722  Sum_probs=41.4

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ...+...|.||++.... ...+|||.||..|+..+.           .....||+||..|...
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~-----------~~~~~CP~Cr~~~~~~   61 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWS-----------DRHRNCPICRLQMTGA   61 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSS-----------CCCSSCHHHHHCTTCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHH-----------HCcCcCCCcCCcccCC
Confidence            33456789999999888 889999999999997762           2357899999888743

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=3.2e-07  Score=64.17  Aligned_cols=49  Identities=24%  Similarity=0.518  Sum_probs=41.7

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .....|.||++........+|||.||..|+..+...           ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~   61 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-----------TPRCYICDQPTGG   61 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-----------CSBCSSSCCBCCS
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-----------CCcCCCcCccccc
Confidence            346789999999999999999999999999888543           2679999999863

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.40  E-value=1.3e-07  Score=65.65  Aligned_cols=52  Identities=27%  Similarity=0.586  Sum_probs=39.6

Q ss_pred             CCccccccccccc--ceEEeC--CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          172 DTELCCICFEQVC--TIEVQD--CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       172 ~~~~C~IC~~~~~--~~~~~~--CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      +...|.||++...  +..+.|  |||.+|..|+..++...          ...||.||..+....+
T Consensus        10 ~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~----------~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A           10 DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE----------NGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS----------CSBCTTTCCBCSSCSS
T ss_pred             cCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC----------CCCCCCCCCccCCCch
Confidence            5678999999762  344555  99999999999885432          2689999998886433

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=2.4e-07  Score=63.26  Aligned_cols=51  Identities=24%  Similarity=0.553  Sum_probs=41.5

Q ss_pred             ccCCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          169 EASDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ...+...|.||++...+.... +|||.||..|+..+....           ..||+||..|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   62 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-----------NRCPKCNIVVHQ   62 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC-----------SSCTTTCCCCCS
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC-----------CcCCCcCcccCc
Confidence            344567899999998887776 999999999998875432           689999988765

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.38  E-value=4.5e-07  Score=63.80  Aligned_cols=56  Identities=25%  Similarity=0.517  Sum_probs=44.3

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..+...|.||++........+|||.||..|+..+.....     .......||.||..+..
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR-----NTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB-----CTTSCBCCTTTCCCCCT
T ss_pred             CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc-----CCCCCCCCCCCCCcCCH
Confidence            345678999999998888999999999999988765532     01224789999988874

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=2.3e-07  Score=62.20  Aligned_cols=50  Identities=30%  Similarity=0.784  Sum_probs=41.2

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++........+|||.+|..|+..+....          ...||.||..|..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----------~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS----------SPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS----------SCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC----------cCCCCCCCcCCCh
Confidence            4567899999998888889999999999998885322          2679999988764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.37  E-value=2.7e-07  Score=71.53  Aligned_cols=48  Identities=27%  Similarity=0.589  Sum_probs=40.2

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ...|.||++....+...+|||.||..|+..+...           ...||+||..|...
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-----------KIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-----------CSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCceECCCCCCccHHHHHHHHHc-----------CCcCCCCCCcCCCC
Confidence            3579999999999999999999999999877322           36799999998654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.34  E-value=3.1e-07  Score=63.09  Aligned_cols=51  Identities=25%  Similarity=0.592  Sum_probs=41.4

Q ss_pred             ccCCCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          169 EASDTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      ...+...|.||++........+ |||.||..|+..+.....         ...||+||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~   62 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQND   62 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS---------SSCCSSSCCSS
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC---------CCcCCCCCCcC
Confidence            3445688999999999999999 999999999988865432         25799999853

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=3.2e-07  Score=61.88  Aligned_cols=50  Identities=36%  Similarity=0.769  Sum_probs=40.1

Q ss_pred             cCCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          170 ASDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..+...|.||++.....       ...+|||.||..|+..+...           ...||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-----------CSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-----------CCCCCCCCCccCc
Confidence            34567899999987664       88899999999999887443           2589999988763

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.32  E-value=5e-07  Score=64.77  Aligned_cols=50  Identities=26%  Similarity=0.613  Sum_probs=41.7

Q ss_pred             CCCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          171 SDTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .+...|.||++...+....+ |||.||..|+..+.....         ...||.||..+.
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---------~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD---------EHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT---------TCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC---------CCcCcCCCCcCC
Confidence            45689999999999999999 999999999988865432         268999998863

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.31  E-value=2.8e-07  Score=64.08  Aligned_cols=56  Identities=25%  Similarity=0.538  Sum_probs=41.9

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++........+|||.||..|+..+.....    ........||.||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~----~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV----TSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS----SSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc----cCCCCCCcCCCCCCcCCH
Confidence            35678999999988888899999999999965532211    112346789999988764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.31  E-value=2.9e-07  Score=62.06  Aligned_cols=50  Identities=30%  Similarity=0.698  Sum_probs=40.6

Q ss_pred             CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ....|.||++.... +...+|||.+|..|+..+....           ..||.||..+..+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~   54 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEE
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-----------CcCcCCChhhHhhh
Confidence            35689999999877 5889999999999998764322           57999999998653

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.31  E-value=3.2e-07  Score=59.03  Aligned_cols=47  Identities=28%  Similarity=0.673  Sum_probs=36.8

Q ss_pred             CCcccccccccccc---eEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCT---IEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~---~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++....   +...+ |||.||..|+..+.           .....||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~-----------~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHH-----------HcCCcCcCCCCEeE
Confidence            45689999998766   66666 99999999997762           22367999998874

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=7.1e-07  Score=63.28  Aligned_cols=53  Identities=28%  Similarity=0.636  Sum_probs=42.1

Q ss_pred             cCCCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          170 ASDTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..+...|.||++....    ....+|||.||..|+..+.....        ....||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI--------NGVRCPFCSKITRI   68 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS--------SCBCCTTTCCCBCC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC--------CCcCCCCCCCcccc
Confidence            3456789999999887    88889999999999988865431        23789999987653

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.29  E-value=3.5e-07  Score=61.11  Aligned_cols=51  Identities=25%  Similarity=0.537  Sum_probs=38.3

Q ss_pred             CCcccccccc-cccce----EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          172 DTELCCICFE-QVCTI----EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       172 ~~~~C~IC~~-~~~~~----~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ++..|.||++ .....    ...+|||.+|..|+..+.....          ..||.||..+..-.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~~   57 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA----------GNCPECGTPLRKSN   57 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCSSCC
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC----------CcCCCCCCcccccc
Confidence            3568999999 33332    4679999999999988854332          67999999887543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.28  E-value=3.6e-07  Score=58.75  Aligned_cols=47  Identities=28%  Similarity=0.634  Sum_probs=38.5

Q ss_pred             CCcccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++....    +...+|||.||..|+..+....           ..||+||..|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-----------YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-----------CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-----------CcCCCCCCcCC
Confidence            45789999998754    7889999999999998774433           67999998875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.28  E-value=6.9e-07  Score=60.34  Aligned_cols=51  Identities=25%  Similarity=0.534  Sum_probs=39.8

Q ss_pred             CCCcccccccccc---cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          171 SDTELCCICFEQV---CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       171 ~~~~~C~IC~~~~---~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      .....|.||++..   ..+...+|||.||..|+..+....           ..||+||..|...+
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-----------KKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-----------CCCcCcCccccCcC
Confidence            3567899997765   456788999999999998875443           46999999887644

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.28  E-value=6.6e-07  Score=62.02  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=42.6

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      .+...|.||++...+....+|||.||..|+..+....          ...||.||..+...
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~----------~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG----------HKTCPKSQETLLHA   56 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT----------CCBCTTTCCBCSSC
T ss_pred             cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC----------cCCCCCCcCCCChh
Confidence            3567899999999999999999999999998885432          37899999888643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=5.5e-07  Score=63.34  Aligned_cols=57  Identities=26%  Similarity=0.533  Sum_probs=43.5

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ...+...|.||++........+|||.+|..|+..+......     ......||+||..+..
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML-----DKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH-----TTSCCCCTTTCCSSCS
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc-----CCCCCcCCCCCCccCH
Confidence            34456789999999888888899999999999887554110     0124789999988874

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.27  E-value=4.6e-07  Score=68.82  Aligned_cols=49  Identities=27%  Similarity=0.503  Sum_probs=41.4

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++........+|||.||..|+..+.....          ..||.||..+..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV----------FSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc----------CCCCCCCccCCC
Confidence            4578999999999999999999999999988765322          589999988864

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.27  E-value=3.8e-07  Score=60.55  Aligned_cols=52  Identities=31%  Similarity=0.652  Sum_probs=41.0

Q ss_pred             CCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEE
Q 041054          172 DTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVV  234 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~  234 (298)
                      +...|.||++.....       ...+|||.+|..|+..+....           ..||+||..+..-.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~   60 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYH   60 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCTTTCEE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC-----------CCCCCCCccCCcccee
Confidence            356899999987654       788999999999998875442           5899999998764443

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.26  E-value=3.4e-07  Score=66.81  Aligned_cols=49  Identities=22%  Similarity=0.648  Sum_probs=41.9

Q ss_pred             CCcccccccccccceEE-eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEV-QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~-~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++....... .+|||.||..|+..+.....          ..||.||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR----------AQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred             CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc----------CCCCCCCCcCCH
Confidence            45789999999999888 99999999999988866553          589999998853

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=98.26  E-value=3.9e-07  Score=61.93  Aligned_cols=48  Identities=35%  Similarity=0.780  Sum_probs=39.3

Q ss_pred             CCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++.....       ...+|||.+|..|+..+....           ..||+||..+..
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~   63 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINH   63 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCC
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-----------CCCCCCCCccCh
Confidence            467899999987665       889999999999998874432           589999988764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.25  E-value=4.8e-07  Score=64.83  Aligned_cols=48  Identities=21%  Similarity=0.479  Sum_probs=38.4

Q ss_pred             CCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++....   +...+|||.||..|+..+...           ...||+||..|..
T Consensus        39 ~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-----------~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           39 QEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-----------SGTCPVCRCMFPP   89 (91)
T ss_dssp             SCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-----------TCBCTTTCCBSSC
T ss_pred             CCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-----------CCcCcCcCccCCC
Confidence            46789999987665   777899999999999887322           2589999988764

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.24  E-value=6.8e-07  Score=61.29  Aligned_cols=52  Identities=27%  Similarity=0.665  Sum_probs=39.4

Q ss_pred             ccCCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          169 EASDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      +......|.||++....   +...+|||.||..|+..+....           ..||+||..|..+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-----------~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-----------KVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-----------SBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-----------CcCCCcCcccccc
Confidence            33456789999998643   4455999999999998874432           4799999888754

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=1.7e-06  Score=57.24  Aligned_cols=48  Identities=25%  Similarity=0.650  Sum_probs=38.4

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      ...+...|.||++........+|||.||..|+..+.....        ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC--------GFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS--------SCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC--------CCCcCcCC
Confidence            3445688999999999998999999999999988865321        23679987

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.18  E-value=9.2e-07  Score=69.47  Aligned_cols=50  Identities=24%  Similarity=0.536  Sum_probs=42.0

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      +...|.||++.....+..+|||.||..|+..+.....          ..||.||..|...
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV----------FSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC----------CBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC----------CcCCCCCccCCCC
Confidence            3568999999999999999999999999988865432          5799999887753

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.17  E-value=3e-07  Score=59.53  Aligned_cols=44  Identities=23%  Similarity=0.550  Sum_probs=37.3

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++........+|||.||..|+..              ....||+||..+.
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~--------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA--------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS--------------SSSSCSSCCSSSS
T ss_pred             cCCCceEeCCccCCeEEcCCCCcccHHHHcc--------------CCCCCCcCCcEee
Confidence            4678999999999999999999999999833              2368999998775

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.16  E-value=8.6e-07  Score=78.94  Aligned_cols=52  Identities=27%  Similarity=0.724  Sum_probs=44.2

Q ss_pred             ccCCCcccccccccccceEEeCCCch-hHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQ-MCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~-~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ...+...|.||++....+...||||. +|..|+..+               ..||.||..|...+...
T Consensus       291 ~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~---------------~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL---------------RKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             HHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC---------------SBCTTTCCBCCEEEECC
T ss_pred             hCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC---------------CcCCCCCCCccCeEEee
Confidence            34456899999999999999999999 899999655               78999999999876543

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.14  E-value=8.3e-07  Score=61.52  Aligned_cols=49  Identities=20%  Similarity=0.550  Sum_probs=37.7

Q ss_pred             CCCccccccccccc---ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVC---TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~---~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++...   .+...+|||.||..|+..+...           ...||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~   64 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-----------HDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-----------TCSCTTTCCCCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-----------CCcCcCcCCccCC
Confidence            35678999987654   3466799999999999887422           2589999988765

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.13  E-value=1.3e-06  Score=78.38  Aligned_cols=53  Identities=32%  Similarity=0.704  Sum_probs=43.9

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ...|.||++....+...||||.+|..|+..+....          ...||.||..|.......
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~----------~~~CP~CR~~i~~~~~i~  384 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE----------GQGCPFCRCEIKGTEPIV  384 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT----------CSBCTTTCCBCCEEEECS
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC----------CCCCCCCCCccCCceeEe
Confidence            36899999999999999999999999997764322          268999999998865543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.11  E-value=1.3e-06  Score=63.52  Aligned_cols=49  Identities=29%  Similarity=0.651  Sum_probs=40.4

Q ss_pred             CCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++........ +|||.||..|+..+...           ...||.||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----------~~~CP~Cr~~~~~   69 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-----------KTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-----------CCBCTTTCCBCCG
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-----------CCCCCCCCCcCCh
Confidence            3457899999998888777 89999999999887432           2689999988875

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.1e-06  Score=60.44  Aligned_cols=49  Identities=29%  Similarity=0.683  Sum_probs=38.3

Q ss_pred             CCCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++....   +...+|||.||..|+..+....           ..||+||..|..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-----------~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-----------RTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-----------SSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-----------CcCcCcCCcCCC
Confidence            356789999977544   4778999999999998774432           579999988754

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.09  E-value=1.5e-06  Score=64.22  Aligned_cols=49  Identities=18%  Similarity=0.562  Sum_probs=41.1

Q ss_pred             CCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++...+.... +|||.||..|+..+....           ..||.||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-----------~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-----------KYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-----------SBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-----------CcCcCCCccccc
Confidence            4567899999999888887 999999999998874332           689999998875

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.08  E-value=2.1e-06  Score=68.55  Aligned_cols=48  Identities=25%  Similarity=0.713  Sum_probs=40.5

Q ss_pred             CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++........ +|||.||..|+..+.....          ..||.||..|.
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~  101 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN----------KECPTCRKKLV  101 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCC
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc----------CCCCCCCCcCC
Confidence            456899999999888777 9999999999988865432          67999999985

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.06  E-value=7.1e-07  Score=66.82  Aligned_cols=49  Identities=27%  Similarity=0.682  Sum_probs=39.9

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++........+|||.||..|+..+...          ....||+||..+..
T Consensus        14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~----------~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK----------ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT----------TTSBCTTTCCBCHH
T ss_pred             CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH----------CcCCCCCCCcccCc
Confidence            45789999999999999999999999999555221          13689999998874

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=4.1e-06  Score=54.28  Aligned_cols=47  Identities=23%  Similarity=0.587  Sum_probs=37.1

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccc
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFC  224 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~c  224 (298)
                      ..+...|.||++........+|||.||..|+..+....        .....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--------~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL--------ERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS--------CCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc--------CCCCCCCCC
Confidence            34567899999999888889999999999998874321        124689987

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.03  E-value=3.2e-06  Score=63.54  Aligned_cols=52  Identities=19%  Similarity=0.446  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ..+...|.||++........+|||.||..|+..+.....          ..||.||..|...
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~   66 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN   66 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC----------CCCCCCCCCcCHH
Confidence            345678999999999989999999999999988755443          3899999888653

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.03  E-value=1.8e-06  Score=64.11  Aligned_cols=50  Identities=32%  Similarity=0.733  Sum_probs=40.6

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ...|.||++........+|||.||..|+..+.....        ....||.||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--------~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK--------GPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS--------SSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC--------CCCCCcCCCCcCCH
Confidence            457999999988888899999999999988855432        22689999988764

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.02  E-value=3.1e-06  Score=63.10  Aligned_cols=52  Identities=27%  Similarity=0.647  Sum_probs=38.3

Q ss_pred             Ccccccccccccc------------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          173 TELCCICFEQVCT------------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       173 ~~~C~IC~~~~~~------------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ...|.||++....                  +...+|||.||..|+..+.....      ......||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~------~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHccc------CCCCCcCCCCCCccCC
Confidence            4589999998643                  33789999999999988854322      1234789999977654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=97.95  E-value=2.5e-06  Score=66.27  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=42.2

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ...+...|.||++........+|||.||..|+..+.....          ..||.||.+|.
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~~~~   77 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP----------QNCAACVHEGI   77 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC----------EECHHHHHTTC
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC----------CCCCCCCCccc
Confidence            4456689999999999999999999999999988854332          58999998763

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.94  E-value=4.9e-06  Score=63.56  Aligned_cols=56  Identities=34%  Similarity=0.647  Sum_probs=44.7

Q ss_pred             CCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEee
Q 041054          171 SDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKIE  237 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~~  237 (298)
                      .+...|.||++.....       ...+|||.||..|+..+...           ...||+||..+....+..+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-----------~~~CP~Cr~~~~~~~l~~l~   67 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-----------ANTCPTCRKKINHKRYHPIY   67 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-----------CSBCTTTCCBCTTTCEEECB
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-----------CCCCCCCCCcCccccccccc
Confidence            3567899999987765       88999999999999887432           25899999999876666543

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=97.92  E-value=9.3e-06  Score=57.23  Aligned_cols=53  Identities=19%  Similarity=0.109  Sum_probs=44.9

Q ss_pred             ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .....+...|.||++-..+.+..+|||.+|..|+..++...           ..||+|+..+..
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-----------~~cP~~~~~l~~   60 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS-----------PTDPFNRQMLTE   60 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC-----------SBCTTTCCBCCG
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC-----------CCCCCCcCCCCh
Confidence            44556788999999999999999999999999998886632           679999988764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.92  E-value=5.6e-06  Score=61.94  Aligned_cols=49  Identities=24%  Similarity=0.456  Sum_probs=41.5

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++...+....+|||.||..|+..+.....          ..||.||..|..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG----------SYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc----------CcCCCCCCCCCH
Confidence            4578999999999999999999999999988865532          579999988764

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.90  E-value=1e-05  Score=56.46  Aligned_cols=48  Identities=23%  Similarity=0.518  Sum_probs=34.2

Q ss_pred             Ccccccccccccc--------------e-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          173 TELCCICFEQVCT--------------I-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       173 ~~~C~IC~~~~~~--------------~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ...|.||++....              + ...+|||.|+..|+..+           ......||+||+.+..-
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-----------l~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLW-----------VKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHH-----------TTTCCBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHH-----------HHhCCCCCCcCCCcchh
Confidence            4567777776533              3 44469999999999887           22336899999887543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=97.87  E-value=1.9e-05  Score=57.42  Aligned_cols=53  Identities=21%  Similarity=0.123  Sum_probs=44.3

Q ss_pred             ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .....+...|.||++-..+.+..+|||.+|..|+..++..           +..||+|+.++..
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-----------~~~cP~~~~~l~~   75 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-----------SPTDPFNRQTLTE   75 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-----------CSBCSSSCCBCCT
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-----------CCCCCCCCCCCCh
Confidence            3445677899999999999999999999999999888542           3689999988764

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=97.85  E-value=2.8e-05  Score=56.29  Aligned_cols=53  Identities=19%  Similarity=0.119  Sum_probs=44.3

Q ss_pred             ccccCCCcccccccccccceEEeCCC-chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCG-HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CG-H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .....++..|.||++-..+.+..+|| |.+|..|+..++..           +..||+|+..+..
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-----------~~~cP~~~~~l~~   69 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTM   69 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCT
T ss_pred             hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-----------CCCCCCCCCCCCh
Confidence            34456778999999999999999999 99999999888442           3589999988764

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.66  E-value=5.3e-06  Score=62.21  Aligned_cols=45  Identities=20%  Similarity=0.462  Sum_probs=37.9

Q ss_pred             CCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++........ +|||.||..|+..+..             ..||.||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-------------~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-------------TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-------------TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-------------CCCcCCCCcCc
Confidence            457899999999998888 9999999999966621             57999998864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.66  E-value=1.8e-05  Score=68.26  Aligned_cols=50  Identities=16%  Similarity=0.044  Sum_probs=42.5

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .+...|.||++-..+++..+|||.+|..|+..+.....          ..||+|+.++..
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~----------~~cP~~~~~~~~  255 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQ  255 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC----------SSCTTTCCCCCG
T ss_pred             CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC----------CCCcCCCCCCch
Confidence            35678999999999999999999999999988876543          349999988864

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.65  E-value=2.3e-05  Score=62.73  Aligned_cols=53  Identities=19%  Similarity=0.435  Sum_probs=43.6

Q ss_pred             ccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          169 EASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       169 ~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ...+...|.||++...+....+|||.||..|+..+.....          ..||.||..|...
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~----------~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG----------HKCPVDNEILLEN   66 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC----------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC----------CCCCCCccCcchh
Confidence            3445689999999999999999999999999988754432          4899999888763

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.58  E-value=0.00016  Score=61.16  Aligned_cols=57  Identities=16%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             ccccCCCcccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccccceeE
Q 041054          167 ISEASDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRSTIAHLV  232 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~I~~~~  232 (298)
                      +........|.||++...+++.. .|||.||..|+..++...         ..+.||.  |+..+..--
T Consensus       175 v~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~---------~~~~CPvtGCr~~l~~~d  234 (267)
T 3htk_C          175 IEGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY---------TTRDCPQAACSQVVSMRD  234 (267)
T ss_dssp             CCSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC---------SCEECSGGGCSCEECGGG
T ss_pred             ecCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC---------CCCCCCcccccCcCchhh
Confidence            45566778999999999998875 999999999999986532         1268999  998776433

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=97.53  E-value=5.7e-05  Score=55.43  Aligned_cols=46  Identities=24%  Similarity=0.475  Sum_probs=34.8

Q ss_pred             CCccccccccccc------------------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          172 DTELCCICFEQVC------------------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       172 ~~~~C~IC~~~~~------------------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      +.+.|.||++...                  .+...+|||.|+..|+..+-.           .+..||+||+..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-----------~~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK-----------TRQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT-----------TCSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH-----------cCCcCcCCCCcc
Confidence            4567888877643                  256689999999999977722           247899999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=97.46  E-value=6e-05  Score=57.33  Aligned_cols=55  Identities=33%  Similarity=0.650  Sum_probs=42.8

Q ss_pred             cCCCcccccccccccce-------EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          170 ASDTELCCICFEQVCTI-------EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~-------~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      ..+...|.||++.....       ...+|||.||..|+..+....           ..||+||..|..--+..
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-----------~~CP~Cr~~~~~~~~~~  130 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-----------NTCPTCRKKINHKRYHP  130 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-----------SBCTTTCCBCCGGGEEE
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-----------CCCCCCCCcCChhccee
Confidence            34567899999986654       788999999999998874433           58999999987654433

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.36  E-value=0.00014  Score=52.08  Aligned_cols=54  Identities=20%  Similarity=0.329  Sum_probs=41.5

Q ss_pred             CCcccccccccccceEEeC-CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccc-cce
Q 041054          172 DTELCCICFEQVCTIEVQD-CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRST-IAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~-CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~-I~~  230 (298)
                      +...|.||++...+.+..+ |||.+|..|+..++.....     ......||+  |+.. +..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~-----~~~~~~CP~tgc~~~~l~~   63 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK-----RKKKAYCPQIGCSHTDIRK   63 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT-----TTCCBCCCSTTCCCCCBCG
T ss_pred             cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC-----cCCCCCCCcCcCcccccCH
Confidence            4678999999999999996 9999999999988765310     112367999  9865 543

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=97.35  E-value=0.00011  Score=58.93  Aligned_cols=51  Identities=16%  Similarity=0.008  Sum_probs=42.6

Q ss_pred             CCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       171 ~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ++...|.||++-..+++..+|||.+|..|+..+.....          ..||+|+.++...
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~----------~tcP~t~~~l~~~  154 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----------HFDPVTRSPLTQD  154 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCGG
T ss_pred             cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC----------CCCCCCcCCCChh
Confidence            35678999999999999999999999999988866532          3599999877653

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.33  E-value=7.7e-05  Score=53.44  Aligned_cols=53  Identities=17%  Similarity=0.374  Sum_probs=36.7

Q ss_pred             CCcccccccccccceE---EeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcc--cccc
Q 041054          172 DTELCCICFEQVCTIE---VQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF--CRST  227 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~---~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~--cr~~  227 (298)
                      +...|.||++......   ..+|||.||..|+...+...-.   .+......||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~---~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh---cCCcccccCccccCCCC
Confidence            4567999998865432   2489999999999887654210   01123578999  9977

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.16  E-value=7.2e-05  Score=55.75  Aligned_cols=46  Identities=22%  Similarity=0.462  Sum_probs=1.0

Q ss_pred             CCcccccccccccc------------------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          172 DTELCCICFEQVCT------------------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       172 ~~~~C~IC~~~~~~------------------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      ..+.|.||++....                  +...+|||.|+..|+..+           ......||+||...
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~W-----------l~~~~~CP~Cr~~~  110 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-----------LKTRQVCPLDNREW  110 (117)
T ss_dssp             CC-------------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHH-----------HHcCCcCCCCCCee
Confidence            45789999987543                  233589999999999665           22346899999874

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.54  E-value=0.0012  Score=45.68  Aligned_cols=49  Identities=16%  Similarity=0.440  Sum_probs=35.8

Q ss_pred             CCcccccccccc--cceEEeCCC-----chhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQV--CTIEVQDCG-----HQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~--~~~~~~~CG-----H~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++..  ......||.     |.|...|+..+-....         ...||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~---------~~~CplCr~~~~   69 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD---------TRCCELCKYEFI   69 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC---------CSBCSSSCCBCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC---------CCCCCCCCCeee
Confidence            467899999754  234568996     9999999877754432         258999997764

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.43  E-value=0.0031  Score=44.85  Aligned_cols=50  Identities=18%  Similarity=0.459  Sum_probs=38.2

Q ss_pred             cccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEE
Q 041054          176 CCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       176 C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                      |-+|--.... ....||.|.||-.|+..+.....          ..||.|+.+|.++-...
T Consensus         4 C~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~----------k~Cp~C~~~V~rVe~~~   54 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD----------KMCPGCSDPVQRIEQCT   54 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC----------CBCTTTCCBCSEEEEEE
T ss_pred             cCccCCCeEEEeeeccccccHHHHHHHHHHhccC----------CCCcCcCCeeeeeEEec
Confidence            5555544443 47889999999999988755544          68999999999987754

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=95.19  E-value=0.0046  Score=54.18  Aligned_cols=88  Identities=23%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             HHHHHhcCCCC-CCCCCCCCCCCCcccccccCCCcccccccccccc------eEE--eCCCchhHHHHHHHHhhcCCCCC
Q 041054          141 REKNILKGTAY-SLPSPSHSDVGADDNISEASDTELCCICFEQVCT------IEV--QDCGHQMCAQCTLALCCHNKPNP  211 (298)
Q Consensus       141 ~~~~ll~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~------~~~--~~CGH~~C~~C~~~l~~~~~~~~  211 (298)
                      +.+-|..--.+ .+|+|........  ..+..+...|.||++....      ...  ..|||.|-..|+..+-.......
T Consensus       277 i~eNL~~IL~i~~fP~p~~~~~~~~--~e~ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sR  354 (381)
T 3k1l_B          277 IHKNLLRMFDLCYFPMPDWSDGPKL--DEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK  354 (381)
T ss_dssp             HHHHHHHHTTCSSCCCCCGGGCCSC--TTCCCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSS
T ss_pred             HHHHHHHHhCccccCCCcccccccc--cccccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCcc
Confidence            34444444444 5666654432100  1122356789999976544      222  26999998888866533221111


Q ss_pred             CCCCCCCCCCcccccccce
Q 041054          212 TTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       212 ~~~~~~~~~Cp~cr~~I~~  230 (298)
                      ..-...+-.||+||.+|+.
T Consensus       355 qSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          355 TFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CTTTCCEEECTTTCCEEEG
T ss_pred             ccccccCCCCCCCCCcCCc
Confidence            1113445679999998863

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=94.42  E-value=0.0087  Score=38.89  Aligned_cols=52  Identities=12%  Similarity=0.031  Sum_probs=41.6

Q ss_pred             cccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054          174 ELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       174 ~~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                      ..|.|+++-..+.+.. +|||.++..|+..+-...           ..||+.+.++...-+...
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-----------~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-----------CCCcCCcCCCChhhcEEC
Confidence            5799999999999988 899999999998874432           359999988876655543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.16  E-value=0.056  Score=36.45  Aligned_cols=49  Identities=24%  Similarity=0.619  Sum_probs=35.0

Q ss_pred             CCcccccccccccc-eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCT-IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~-~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ....|.||.+.... .....|+|.|=..|+.++....         ....||.||....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~---------~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN---------AEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC---------SSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc---------CCCCCCCCcCcCC
Confidence            45789999987653 3444899999999997773221         1268999996654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=93.74  E-value=0.036  Score=35.75  Aligned_cols=49  Identities=20%  Similarity=0.533  Sum_probs=33.3

Q ss_pred             CCcccccccccccceEEeCCC--c---hhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEVQDCG--H---QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CG--H---~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++........||.  +   .+=..|+..+-....         ...||+|+..+.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~---------~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC---------CCccCCCCCeee
Confidence            567899999875555568854  3   456677766644322         268999997753

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=83.01  E-value=1.2  Score=30.70  Aligned_cols=50  Identities=26%  Similarity=0.641  Sum_probs=39.1

Q ss_pred             CCccccccccccc-------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          172 DTELCCICFEQVC-------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       172 ~~~~C~IC~~~~~-------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ....|.||-+..-       .+....|+--+|..|...-....+          ..||.|.+...+.
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCktrYkr~   71 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRL   71 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC----------ccccccCCccccc
Confidence            4579999999843       355666999999999987766666          8999999887654

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=81.65  E-value=1  Score=30.34  Aligned_cols=56  Identities=20%  Similarity=0.420  Sum_probs=34.4

Q ss_pred             cCCCcccccccccccceEEeC----CCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          170 ASDTELCCICFEQVCTIEVQD----CGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~----CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      ......|.+|.++.-+.-+..    -+|.||-.|....-....+....-.|-..+||.-.
T Consensus        12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~g   71 (93)
T 2cs3_A           12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVG   71 (93)
T ss_dssp             SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSS
T ss_pred             CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCC
Confidence            345678999999877654444    48999999986654333322222255556666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	298
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.004
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	4e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-04
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	0.001
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.003
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.003
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.004

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 29/100 (29%), Positives = 40/100 (40%), Gaps = 4/100 (4%)

Query: 15  TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
           TPLH+A+       V  LL  GA    S         TPLH+AAR G  +  + LL   A
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVK----VETPLHMAARAGHTEVAKYLLQNKA 57

Query: 75  DRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPS 114
               +    + P   A +  H     LL   +A P +  +
Sbjct: 58  KVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 97

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 2e-13
 Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 29/136 (21%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP------------ 49
                N+ +  G TPLHL A++       +L+  G +V A+T     P            
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKL 312

Query: 50  -----------------GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALK 92
                            G +PLH AA+ G  D +  LL  GA        G  P A+A +
Sbjct: 313 VKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 372

Query: 93  HKHGACAALLNPASAE 108
             + +   +L   + E
Sbjct: 373 LGYISVTDVLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 5e-13
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            N+ + +  TPLH+AAR    E    LL + A V A          TPLH AAR G  + 
Sbjct: 26  PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD----DQTPLHCAARIGHTNM 81

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGAC 98
           ++ LL   A+      +G  P  +A +  H   
Sbjct: 82  VKLLLENNANPNLATTAGHTPLHIAAREGHVET 114

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           +   VN +   G +PLH AA+Q   + V +LL +GA     +      G+TPL +A R G
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD----GTTPLAIAKRLG 374

Query: 62  SIDCI---RELLAWGADRLHRD 80
            I      + +    +  L  D
Sbjct: 375 YISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-09
 Identities = 40/210 (19%), Positives = 67/210 (31%), Gaps = 10/210 (4%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
                  +G TPLH+AA+  +     +LL+  A   A+       G TPLH+A    ++D
Sbjct: 124 SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN----GLTPLHVAVHHNNLD 179

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL----NPASAEPLVWPSPLKFIS 120
            ++ LL  G        +G  P  +A K      A  L      A+AE +   +PL   +
Sbjct: 180 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 239

Query: 121 ELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICF 180
           +       ++   L +       N    T   L +       AD  I      +      
Sbjct: 240 QEGH--AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG 297

Query: 181 EQVCTIEVQDCGHQMCAQCTLALCCHNKPN 210
                +       ++           N   
Sbjct: 298 YTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           Y    N    +G TPLHLAA++   E V +LL   A            G TPLHL A+ G
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS----GLTPLHLVAQEG 275

Query: 62  SIDCIRELLAWGAD 75
            +     L+  G  
Sbjct: 276 HVPVADVLIKHGVM 289

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (153), Expect = 3e-12
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 3/76 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           VN+R  RG TPL LA  ++    V  LL+   +    T   G    T L LA        
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK---TALLLAVELKLKKI 268

Query: 66  IRELLAWGADRLHRDV 81
              L   GA     D+
Sbjct: 269 AELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 6e-08
 Identities = 28/102 (27%), Positives = 35/102 (34%), Gaps = 1/102 (0%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARG 60
                      GAT L  AA +   E + ILLD  GA V A            L  +   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
                   LL  GAD   R   G+ P  +A++ KH      L
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
            L  A +    + V  LL+ GA V       G    TPLH A +    D +  LL  GA
Sbjct: 7  HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW---TPLHNAVQMSREDIVELLLRHGA 63

Query: 75 DRLHRDVSGRIPYAVALKHKHGAC 98
          D + R  +G  P+ +A        
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKL 87

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 50 GSTPLHLAARGGSIDCIRELLAWGAD-RLHRDVSGRIPYAVALKHKHGACA 99
           +  L  A +   +D +++LL  GA+     +  G  P   A++       
Sbjct: 5  DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIV 55

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 42/191 (21%), Positives = 67/191 (35%), Gaps = 17/191 (8%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           VN ++   G TPLH A +  R + V +LL       A        G+TP  LAA  GS+ 
Sbjct: 31  VNFQEEEGGWTPLHNAVQMSREDIVELLLR----HGADPVLRKKNGATPFLLAAIAGSVK 86

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQ 124
            ++  L+ GAD    D  G   +  A  +        L    A   +     +    L +
Sbjct: 87  LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146

Query: 125 EAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVC 184
                L +A  + + E  K +L             ++GAD N  +               
Sbjct: 147 GGATALMDAAEKGHVEVLKILL------------DEMGADVNACDNMGRNALIHALLSSD 194

Query: 185 TIEVQDCGHQM 195
             +V+   H +
Sbjct: 195 DSDVEAITHLL 205

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.0 bits (141), Expect = 1e-10
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
                      G T LH+AA +   E + +L+ +   V          G TPLH AA  G
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----KDYDGWTPLHAAAHWG 243

Query: 62  SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHG 96
             +  R L+    D    +  G+  + VA +   G
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFDVADEDILG 278

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 10/47 (21%), Positives = 15/47 (31%)

Query: 49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
                  A   G  + +  LL  GAD  + +V G      A    +
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDN 85

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.6 bits (140), Expect = 1e-10
 Identities = 33/198 (16%), Positives = 48/198 (24%), Gaps = 10/198 (5%)

Query: 10  DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIREL 69
              G T LHLA   +    +  LL   A            G T LHLAA  G    + +L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-GQTALHLAAILGEASTVEKL 64

Query: 70  LAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKAL 129
            A GA  L  +  G     +A + +   CA +L           S        +      
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124

Query: 130 LENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQ 189
              A +++    E                 D                 +         V+
Sbjct: 125 HAPAAVDSQPNPENEEEP---------RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR 175

Query: 190 DCGHQMCAQCTLALCCHN 207
                          C  
Sbjct: 176 LLRDAGADLNKPEPTCGR 193

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 15  TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA 74
           TPLHLA   +    + +LL +GA   A   G    G TPL  A    +    R L A GA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYG----GRTPLGSALLRPNPILARLLRAHGA 249

Query: 75  D 75
            
Sbjct: 250 P 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 6e-06
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGA 37
              R   G TPL  A  +  P    +L   GA
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 8e-06
 Identities = 28/184 (15%), Positives = 48/184 (26%), Gaps = 12/184 (6%)

Query: 50  GSTPLHLAARGGSIDCIRELLAWGADRLH---RDVSGRIPYAVALKHKHGACAALLNPAS 106
           G T LHLA        +  LL + A   +   ++  G+    +A      +    L  A 
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68

Query: 107 AEPLVWPSPLKFISELNQE------AKALLENALMEANKEREKNILKGTAYSLPSPSHSD 160
           A  LV          L         A  LL+      +  R+ +    T     +P  S 
Sbjct: 69  AGVLVAERGGHTALHLACRVRAHTCACVLLQP---RPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 161 VGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPV 220
             A  +     + E      +    +E ++          +                   
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185

Query: 221 CPFC 224
            P  
Sbjct: 186 KPEP 189

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID 64
           ++++++  G T LHLAA       V  L        A        G T LHLA R  +  
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYA----AGAGVLVAERGGHTALHLACRVRAHT 92

Query: 65  CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
           C   LL              +  +           A ++
Sbjct: 93  CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.8 bits (138), Expect = 2e-10
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
            +    +G T LH AA+      V  L+             G    TP+ LAA+ G I+ 
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK---TPIMLAAQEGRIEV 236

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
           +  L+  GA     D +      +A  + H     + +
Sbjct: 237 VMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 8e-10
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
                + +D  G TP+ LAA++ R E V  L+  GA V A          T   LA    
Sbjct: 210 KGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT----DHTARQLAQANN 265

Query: 62  SIDCIRELL 70
             + +    
Sbjct: 266 HHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 14/82 (17%)

Query: 15 TPLHLA-ARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELL--- 70
          +P+ L             +      +            T LH  A   S +   +L+   
Sbjct: 2  SPIKLHTEAAGSYAITEPITRESVNIIDPRHNR-----TVLHWIASNSSAEKSEDLIVHE 56

Query: 71 -----AWGADRLHRDVSGRIPY 87
               A GAD    D     P 
Sbjct: 57 AKECIAAGADVNAMDCDENTPL 78

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 6   VNIRDGR-GATPLHLAARQRRPECVHILLDSGALVCASTG----GYGCPGSTPLHLAARG 60
           VNI D R   T LH  A     E    L+   A  C + G       C  +TPL LA   
Sbjct: 25  VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 84

Query: 61  GSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALL 102
                +  L+  GAD    + S R     A  ++       +
Sbjct: 85  RRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 126

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 56.4 bits (135), Expect = 8e-10
 Identities = 14/114 (12%), Positives = 31/114 (27%), Gaps = 9/114 (7%)

Query: 5   FVNIRDGRGATPLHLAARQRRP---ECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
             + +  +      +AA        + + +LL S  +V                LAA  G
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE----NYQAFRLAAENG 137

Query: 62  SIDCIRELLAWGADRLHRDVS--GRIPYAVALKHKHGACAALLNPASAEPLVWP 113
            +  +  L       +   +       + +A ++ H      L   +       
Sbjct: 138 HLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.5 bits (130), Expect = 4e-09
 Identities = 12/90 (13%), Positives = 20/90 (22%), Gaps = 2/90 (2%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           V +          LAA       ++ L +       +             LAA  G +  
Sbjct: 119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA--ENYHAFRLAAENGHLHV 176

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           +  L           +     YA       
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVG 206

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGAL-VCASTGGYGCPGSTPLHLAARGGSID 64
             ++       L     +   + +  LL    +   A T       +  L LA R G+  
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 331

Query: 65  CIRELL 70
               LL
Sbjct: 332 ACALLL 337

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (125), Expect = 1e-08
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
            R +        +  +    +R+   +   LD   ++          G T L++AAR G+
Sbjct: 213 NRPIQSGTNEKESKPNDKNGERKDSILE-NLDLKWIIANMLNAQDSNGDTCLNIAARLGN 271

Query: 63  IDCIRELLAWGADRLHRDVSGRIP--YAV 89
           I  +  LL +GAD    + SG  P  +  
Sbjct: 272 ISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 13/46 (28%), Positives = 25/46 (54%)

Query: 50  GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
           G+TPLH      +++ ++ L+  G++RL+ D  G      A+K  +
Sbjct: 107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 152

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 6   VNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG--- 61
           +NI  D  G TPLH        E V  L+  G+              + L  A +     
Sbjct: 99  LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG----ESCLVKAVKSVNNY 154

Query: 62  ---SIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAAL 101
              + + + + L              + + +      G  AA 
Sbjct: 155 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAA 197

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 29/127 (22%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCP--------------- 49
            VN  +  G TPLH AA + R E   +LL+ GA   A                       
Sbjct: 95  QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI 154

Query: 50  --------------GSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH 95
                         G+TPLHLA     ++  + L++ GA     +   + P  VA     
Sbjct: 155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLG 214

Query: 96  GACAALL 102
                ++
Sbjct: 215 LILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 26/114 (22%), Positives = 29/114 (25%), Gaps = 37/114 (32%)

Query: 6   VNIRDGRGATPLHLAAR---------------------------------QRRPECVHIL 32
               D    T LH A                                     R E V  L
Sbjct: 30  ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKAL 89

Query: 33  LDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP 86
           L  GA V A        G TPLH AA     +    LL  GA+   +D      
Sbjct: 90  LGKGAQVNAVNQN----GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATA 139

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 3e-05
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGG 61
           Y    NI+D  G TPLHLA  + R E   +L+  GA +            TPL +A  GG
Sbjct: 158 YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE----EKTPLQVAK-GG 212

Query: 62  SIDCIRELL 70
               ++ ++
Sbjct: 213 LGLILKRMV 221

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 4e-07
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 3/95 (3%)

Query: 16  PLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGAD 75
            LHLA+       V +L+  GA V A      C G T LHLA    + D +  LL  GAD
Sbjct: 114 CLHLASIHGYLGIVELLVSLGADVNAQ---EPCNGRTALHLAVDLQNPDLVSLLLKCGAD 170

Query: 76  RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPL 110
                  G  PY +            L   + E L
Sbjct: 171 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL 205

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 4e-07
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 4/78 (5%)

Query: 3   ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGS 62
           A         G T LHLA   + P+ V +LL  GA V   T      G +P  L     S
Sbjct: 135 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ----GYSPYQLTWGRPS 190

Query: 63  IDCIRELLAWGADRLHRD 80
               ++L     + L   
Sbjct: 191 TRIQQQLGQLTLENLQML 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 50 GSTPLHLAARGGSIDC----IRELLAWGADRLHRDVSGRIPYAVALKHKHGAC 98
          G + LHLA            IR++    A    ++   + P  +A+       
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEI 54

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 1e-06
 Identities = 35/98 (35%), Positives = 44/98 (44%), Gaps = 4/98 (4%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDC 65
           +N  D  G T LH AA     E V+ILL       A+         TPL LAAR GS + 
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLM----HHANRDAQDDKDETPLFLAAREGSYEA 171

Query: 66  IRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLN 103
            + LL   A+R   D   R+P  VA +  H     LL+
Sbjct: 172 SKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 26 PECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           + +  LL  GA + A+    G    T LHLAAR    D  + LL  
Sbjct: 2  AQVISDLLAQGAELNATMDKTGE---TSLHLAARFARADAAKRLLDA 45

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 5e-06
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 171 SDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH 230
           S  +LC IC E    ++++ CGH MC  C  +                  CPFCR  I  
Sbjct: 21  STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQG----------CPFCRCEIKG 70

Query: 231 LVVVKIEN 238
              + ++ 
Sbjct: 71  TEPIVVDP 78

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG 73
           PLH A  +     V  LL S   +       G     PLH +    + +    LL+  
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR---IPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 5e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 52 TPLHLAARGGSIDCIRELL-AWGADRLHRDVSGRIPYAVALKHKH 95
           PLH A        ++ELL +  +  L +D  GRIP   ++  + 
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 8/72 (11%)

Query: 5   FVNIRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSI 63
            VN +D +G TPL  A  +   +   +L++  GA            G+    +A      
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK----GAKAEDVALNE--- 216

Query: 64  DCIRELLAWGAD 75
              +  L    D
Sbjct: 217 QVKKFFLNNVVD 228

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 28/101 (27%), Positives = 41/101 (40%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW 72
           G TPLH+A  Q     VH L++           Y     TPLHLA        +R L+  
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 73  GADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWP 113
           GA  +  D  G+    +A +H+   C   L  ++A   +  
Sbjct: 63  GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL 103

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 13  GATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIR 67
           G++ LH A+ +     V  L+ SGA              TPL +A     ID +R
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCH----NDTPLMVARSRRVIDILR 227

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 2   YARFVNIRDGRGATPLHLAARQRRPECVHILLDSG 36
            A  V  R+ +G T   LA    R E V ++  +G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.001
 Identities = 9/47 (19%), Positives = 15/47 (31%)

Query: 52 TPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGAC 98
            L  AA  G ++ +  LL    +   ++  GR    V         
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA 49

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 17/80 (21%)

Query: 170 ASDTELCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI 228
           A+  E C IC E      +   C H  C  C       N             CP C+  +
Sbjct: 2   ATVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP-----------TCPLCKVPV 50

Query: 229 AHLVVVKIENQEDADRDIGD 248
                  + +  ++D + GD
Sbjct: 51  E-----SVVHTIESDSEFGD 65

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (89), Expect = 2e-04
 Identities = 19/104 (18%), Positives = 26/104 (25%), Gaps = 32/104 (30%)

Query: 6   VNIRDGRGATPLHLAAR---QRRPECVHILLDSGALVCASTGGYGCP------------- 49
           +        T LHLA R   +     V  L+ +   +   TG                  
Sbjct: 38  LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 97

Query: 50  ----------------GSTPLHLAARGGSIDCIRELLAWGADRL 77
                           G TPL +A R     C   L    + R 
Sbjct: 98  KLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF 141

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLD 34
           ++ RD RG TPL LA ++   + V IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (81), Expect = 0.001
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 49 PGSTPLHLAARGGSIDCIRELLAWGA 74
          P +  L  AA  G ++ +R LL  GA
Sbjct: 2  PSADWLATAAARGRVEEVRALLEAGA 27

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 52 TPLHLAARGGSIDCIRELLAWGAD 75
            L  AAR G  D +R L+A GA 
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAP 27

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 4/27 (14%), Positives = 9/27 (33%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHIL 32
           V+ +     T   ++      +   IL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 165 DNISEASDTEL-CCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPF 223
            N+  A    L C IC E +       C H  C  C L L    K            CP 
Sbjct: 12  QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQ--------CPL 63

Query: 224 CRSTI 228
           C++ I
Sbjct: 64  CKNDI 68

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 4/32 (12%), Positives = 8/32 (25%)

Query: 6   VNIRDGRGATPLHLAARQRRPECVHILLDSGA 37
           +   D + A        +   +C   L     
Sbjct: 96  MTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	298
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.85
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.84
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.82
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.8
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.8
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.79
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.77
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.76
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.74
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.53
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.49
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.47
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.41
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.3
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.18
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.16
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.14
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.06
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.05
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.04
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.01
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	97.73
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	97.67
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	97.41
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	97.25
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	96.0
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	81.42

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.6e-26  Score=196.59  Aligned_cols=209  Identities=18%  Similarity=0.092  Sum_probs=159.0

Q ss_pred             ccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054            7 NIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus         7 n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      +..|++|+||||+||+.|+.++|++||++|+++...+. .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~-~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccC-cCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            56789999999999999999999999999988543321 22389999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCC-------------------------------------CChhhhhHhhHHHHHH
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWP-------------------------------------SPLKFISELNQEAKAL  129 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~-------------------------------------~~~~~~~~~~~~~~t~  129 (298)
                      ||+|+..++.+++++|++.+.......                                     .....++.++.+|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            999999999999999988765422110                                     1112334457788999


Q ss_pred             HHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCC
Q 041054          130 LENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKP  209 (298)
Q Consensus       130 L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~  209 (298)
                      ||+|+..++.+++++|++....... +....           +.....++..         .|+..+...++..+++.+.
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~-----------g~TpL~~A~~---------~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLNK-PEPTC-----------GRTPLHLAVE---------AQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTC-CCTTT-----------CCCHHHHHHH---------TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccccccccchhcccccccc-ccccc-----------cccccccccc---------ccHHHHHHHHHHCCCCCCC
Confidence            9999999999999988765332110 00010           0111111111         2677788888888777776


Q ss_pred             CCCCC-CCCCCCCcccccccceeEEEEee
Q 041054          210 NPTTA-CLTPPVCPFCRSTIAHLVVVKIE  237 (298)
Q Consensus       210 ~~~~~-~~~~~~Cp~cr~~I~~~~~~~~~  237 (298)
                      .+..+ ||++.+|...+..|+++++...+
T Consensus       221 ~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         221 RMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             CCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            66655 99999999999999999987654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-25  Score=185.58  Aligned_cols=132  Identities=30%  Similarity=0.305  Sum_probs=123.7

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.+++.+|..|+||||+|+..|+.+++++|+++|++++..+.    .|.||||+|+..++.+++++|++.|++++.+|.
T Consensus        92 ~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~----~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~  167 (223)
T d1uoha_          92 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH----YEATAMHRAAAKGNLKMIHILLYYKASTNIQDT  167 (223)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             cCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCC----CCCccchhhhhcCCcchhhhhccccceeeeccC
Confidence            4678999999999999999999999999999999999998877    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      .|+||||+|+..|+.+++++|+++|+++          +.+|.+|+||||+| ..++.+++++|++|
T Consensus       168 ~g~TpL~~Aa~~g~~~~v~~LL~~Gad~----------~~~d~~g~tpl~~A-~~~~~~i~~~Ll~~  223 (223)
T d1uoha_         168 EGNTPLHLACDEERVEEAKLLVSQGASI----------YIENKEEKTPLQVA-KGGLGLILKRMVEG  223 (223)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHC-CTTHHHHHHHHHCC
T ss_pred             CCCceeccccccCcHHHHHHHHHCCCCC----------CCCCCCCCCHHHHH-HCCCHHHHhcccCC
Confidence            9999999999999999999999999994          56788999999998 46888899999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.3e-26  Score=175.48  Aligned_cols=106  Identities=25%  Similarity=0.269  Sum_probs=100.4

Q ss_pred             CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhc
Q 041054           14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH   93 (298)
Q Consensus        14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~   93 (298)
                      .|||++|++.|+.++|++|+++|++++..+.    .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~----~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~   78 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----GGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   78 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS----SSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc----cccccccccccccccccccccccccceeeecccccccchhhhhhc
Confidence            4899999999999999999999999999887    899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHH
Q 041054           94 KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENA  133 (298)
Q Consensus        94 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A  133 (298)
                      ++.+++++|+++|++          ++.+|.+|.|||++|
T Consensus        79 ~~~~~v~~Ll~~Gad----------~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          79 GHVSCVKLLLSKGAD----------KTVKGPDGLTALEAT  108 (118)
T ss_dssp             TCCHHHHHHHTTCCC----------SSSSSSSTCCCCCTC
T ss_pred             Cchhhhhhhhccccc----------ceeeCCCCCCHHHHH
Confidence            999999999999999          456788888999877

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1e-25  Score=172.08  Aligned_cols=123  Identities=22%  Similarity=0.182  Sum_probs=113.1

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCC-cHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGR-IPYAVA   90 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~-tpL~~A   90 (298)
                      -+.++||+|+..|+.++|++||++|+++|..+.    .|.||||+|+ .|+.+++++|+++|++++.+|..+. ||||+|
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~----~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNS----YGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----SSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccc----cccccccccc-cccccccccccccccccccccccccccccccc
Confidence            356899999999999999999999999998887    8999999775 7999999999999999999998876 699999


Q ss_pred             HhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           91 LKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        91 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +..|+.+++++|+++|++          ++.+|..|+|||++|+..++.+++++|+.++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~----------~~~~d~~G~T~l~~A~~~g~~~~v~~Llsaa  125 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGAR----------LDVRDAWGRLPVDLAEELGHRDVARYLRAAA  125 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCC----------SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             cccccccccccccccccc----------cccccCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999998          4667889999999999999999999988653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4e-24  Score=181.57  Aligned_cols=135  Identities=27%  Similarity=0.304  Sum_probs=117.9

Q ss_pred             cccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCC-----------------------------------------
Q 041054            6 VNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTG-----------------------------------------   44 (298)
Q Consensus         6 vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~-----------------------------------------   44 (298)
                      +|.+|..|+||||+|+..|+.++|++|+++|++++..+.                                         
T Consensus        38 i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  117 (255)
T d1oy3d_          38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQ  117 (255)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------
T ss_pred             ccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHh
Confidence            788899999999999999999999999999998876651                                         


Q ss_pred             -----------------------------------CCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccc-ccCCCcHHH
Q 041054           45 -----------------------------------GYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHR-DVSGRIPYA   88 (298)
Q Consensus        45 -----------------------------------~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~-d~~g~tpL~   88 (298)
                                                         ..|..|.||||+|+..++.++|++|++.+++.+.. +..|.||||
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~  197 (255)
T d1oy3d_         118 DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (255)
T ss_dssp             --------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             hhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccccccccccccccccc
Confidence                                               12357899999999999999999999999998864 567999999


Q ss_pred             HHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           89 VALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        89 ~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +|+..++.+++++|+++|++          ++.+|..|.||||+|+..++.+++++|++.++
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad----------in~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga  249 (255)
T d1oy3d_         198 LAVEAQAASVLELLLKAGAD----------PTARMYGGRTPLGSALLRPNPILARLLRAHGA  249 (255)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHCCCC----------CCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            99999999999999999998          46678889999999999999999999888655

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.89  E-value=2.5e-24  Score=177.48  Aligned_cols=133  Identities=24%  Similarity=0.226  Sum_probs=121.6

Q ss_pred             CCCccc-CCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC------------------------------------
Q 041054            3 ARFVNI-RDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG------------------------------------   45 (298)
Q Consensus         3 ~~~vn~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~------------------------------------   45 (298)
                      |+++|. .|.+|.||||+||..|+.+++++|++.|++++..+..                                    
T Consensus        12 g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (209)
T d1ot8a_          12 GAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGT   91 (209)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCC
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567887 5899999999999999999999999999998876521                                    


Q ss_pred             ---------------------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHH
Q 041054           46 ---------------------------YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGAC   98 (298)
Q Consensus        46 ---------------------------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~   98 (298)
                                                 .+..|+|||++++..+..++++.|++.+++++..|..|.||||+|+..|+.++
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~  171 (209)
T d1ot8a_          92 TPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEA  171 (209)
T ss_dssp             CHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHH
Confidence                                       23678999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           99 AALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        99 ~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      +++|+++|++          ++..|..|+|||++|+..++.+++++|
T Consensus       172 v~~Ll~~gad----------~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         172 SKALLDNFAN----------REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCC----------CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999          456788899999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-24  Score=166.26  Aligned_cols=120  Identities=14%  Similarity=0.153  Sum_probs=104.3

Q ss_pred             cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                      ++||.||..|+.++|++|+++|+++|.++.    .|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~----~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPND----EGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----TSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccc----ccccccccccccccccccccccccccccccccccCcccccccchhh
Confidence            689999999999999999999999999887    8999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHH--HHHhhhHHHHHHHhc
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLEN--ALMEANKEREKNILK  147 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~--A~~~~~~~~~~~ll~  147 (298)
                      +.+++++|+++|+++....         ...+.++++.  +...++.+++++|+.
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~---------~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMT---------YSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCC---------SSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCccccc---------CCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            9999999999999954321         1234455444  456677888887764

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=175.61  Aligned_cols=145  Identities=25%  Similarity=0.291  Sum_probs=100.2

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      +.+++.+|..|+||||+||..|+.+++++|+..+........    .+.+++++++..++.+++++|+++|++++.+|..
T Consensus        27 ~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~  102 (223)
T d1uoha_          27 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----AGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQN  102 (223)
T ss_dssp             GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT----TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccc----cccccccccccccccchhHHHhccCceeEeeCCC
Confidence            567899999999999999999999888888877766555444    4556666666666666666666666666666666


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccCCCCCCCCCC----Chh-------------------hhhHhhHHHHHHHHHHHHhhhH
Q 041054           83 GRIPYAVALKHKHGACAALLNPASAEPLVWPS----PLK-------------------FISELNQEAKALLENALMEANK  139 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~----~~~-------------------~~~~~~~~~~t~L~~A~~~~~~  139 (298)
                      |.||||+|+..++.+++++|+++|+++.....    +.+                   .++..+.+|.|||+.|+..++.
T Consensus       103 g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~  182 (223)
T d1uoha_         103 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV  182 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCH
T ss_pred             CCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcH
Confidence            66666666666666666666666655543321    111                   1345577889999999999999


Q ss_pred             HHHHHHhc-CCCC
Q 041054          140 EREKNILK-GTAY  151 (298)
Q Consensus       140 ~~~~~ll~-~~~~  151 (298)
                      +++++|++ |+++
T Consensus       183 ~~v~~LL~~Gad~  195 (223)
T d1uoha_         183 EEAKLLVSQGASI  195 (223)
T ss_dssp             HHHHHHHHTTCCS
T ss_pred             HHHHHHHHCCCCC
Confidence            98888775 4443

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=166.18  Aligned_cols=131  Identities=24%  Similarity=0.289  Sum_probs=120.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .+.++|.+|..|+||||+|+ .++.+++++||+++++++....    .|.+||++++..++.+++++++++|++++.+|.
T Consensus        25 ~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~   99 (156)
T d1bd8a_          25 ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT----SGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG   99 (156)
T ss_dssp             TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCCCCccCCCCCccccccc-cccccccccccccccccccccc----ccccccccccccccccccccccccccccccccC
Confidence            36789999999999999987 5899999999999999998876    799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      .|.||||+|+..|+.+++++|+ .|++          ++.+|.+|+|||++|+..++.+++++|+++
T Consensus       100 ~~~t~L~~A~~~~~~~i~~~L~-~~~~----------~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         100 TGALPIHLAVQEGHTAVVSFLA-AESD----------LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHH-TTSC----------TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCeeecccccccccccccccc-cccc----------ccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999999887 6777          466788999999999999999999998864

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.3e-23  Score=180.03  Aligned_cols=136  Identities=21%  Similarity=0.222  Sum_probs=121.4

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC------------------------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG------------------------------------   45 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~------------------------------------   45 (298)
                      .|++||.+|.+|+||||+|+..|+.++|++||++|++++..+..                                    
T Consensus        63 ~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  142 (277)
T d2fo1e1          63 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN  142 (277)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTT
T ss_pred             cCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccc
Confidence            47899999999999999999999999999999999999876621                                    


Q ss_pred             ----------------------------------------CCCCCChHHHHHHHcCCHHHHHHHH-HcCCCCcccccCCC
Q 041054           46 ----------------------------------------YGCPGSTPLHLAARGGSIDCIRELL-AWGADRLHRDVSGR   84 (298)
Q Consensus        46 ----------------------------------------~~~~g~TpLh~A~~~g~~~~v~~Ll-~~gad~~~~d~~g~   84 (298)
                                                              .+..|+||||+++..++.+++++++ ..+.+.+.+|..|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~  222 (277)
T d2fo1e1         143 GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK  222 (277)
T ss_dssp             SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCC
T ss_pred             cchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCC
Confidence                                                    1146888999999999999888655 56889999999999


Q ss_pred             cHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           85 IPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        85 tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      ||||+|+..|+.+++++|+++|++          ++.+|.+|.||||+|+..++.+++++|++
T Consensus       223 tpL~~A~~~g~~~iv~~Ll~~gad----------in~~d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         223 TPIMLAAQEGRIEVVMYLIQQGAS----------VEAVDATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC----------SSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCC----------CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999          46678889999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=159.48  Aligned_cols=133  Identities=26%  Similarity=0.280  Sum_probs=114.5

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|.+|+||||+|+ .|+.+++++|+++|++++..+.    .|.++|++++..++.++++.|++.+.+++..|.
T Consensus        23 ~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~----~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~   97 (156)
T d1ihba_          23 NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDR----TGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN   97 (156)
T ss_dssp             SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCCCcCccCCcccccccccc-cccccccccccccccccccccc----cCccccccccccccccccccccccccccccccc
Confidence            46788889999999998775 6888999999999988887776    788999999999999999999999988888888


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      .|.+||++|+..++.+++++|+++++..         .+.++.+|.||||+|++.++.+++++|++.
T Consensus        98 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~---------~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          98 EGNLPLHLAAKEGHLRVVEFLVKHTASN---------VGHRNHKGDTACDLARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCCC---------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccc---------ccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999998887632         356678889999999999999999988764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-22  Score=159.41  Aligned_cols=97  Identities=30%  Similarity=0.403  Sum_probs=90.7

Q ss_pred             CCCCCCcHHHHHHHc---CChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCc
Q 041054            9 RDGRGATPLHLAARQ---RRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRI   85 (298)
Q Consensus         9 ~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~t   85 (298)
                      .+..|+||||+|+..   ++.++|++|+++|+++|.++.    .|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~----~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  116 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG----KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGET  116 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh----hhccccccccccccccccccccccCccccccCCCCCC
Confidence            377899999999974   678999999999999999887    8999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHhccCCCCC
Q 041054           86 PYAVALKHKHGACAALLNPASAEP  109 (298)
Q Consensus        86 pL~~A~~~~~~~~~~~Ll~~ga~~  109 (298)
                      |||+|++.|+.+++++|++.++..
T Consensus       117 pL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         117 PLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999977653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.87  E-value=9.4e-24  Score=180.97  Aligned_cols=204  Identities=17%  Similarity=0.078  Sum_probs=146.5

Q ss_pred             CCcccCC-CCCCcHHHHHHHcCChHHHHHH--------HhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCC
Q 041054            4 RFVNIRD-GRGATPLHLAARQRRPECVHIL--------LDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGA   74 (298)
Q Consensus         4 ~~vn~~d-~~G~TpLh~Aa~~g~~~~v~~L--------l~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~ga   74 (298)
                      ..+|..| ++|+||||+||..|+.++|++|        +++|+++|..+.    .|+||||+|+..|+.++|++|+++|+
T Consensus        23 ~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~----~G~TpLh~A~~~g~~~iv~~Ll~~Ga   98 (277)
T d2fo1e1          23 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC----DENTPLMLAVLARRRRLVAYLMKAGA   98 (277)
T ss_dssp             TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT----TSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             cCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC----CCCeeecccccccccccccccccccc
Confidence            3466666 4699999999999999988776        577999999887    89999999999999999999999999


Q ss_pred             CCcccccCCCcHHHHHHhcCcHHHHHHhccCCCC-----CCCCC--CC------------------------------hh
Q 041054           75 DRLHRDVSGRIPYAVALKHKHGACAALLNPASAE-----PLVWP--SP------------------------------LK  117 (298)
Q Consensus        75 d~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~-----~~~~~--~~------------------------------~~  117 (298)
                      +++.+|..|.|||++|+..++.+++.++...+..     .....  .+                              ..
T Consensus        99 d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (277)
T d2fo1e1          99 DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA  178 (277)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG
T ss_pred             ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccc
Confidence            9999999999999999999999998888665321     00000  00                              00


Q ss_pred             hhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHH
Q 041054          118 FISELNQEAKALLENALMEANKEREKNILKGTAYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCA  197 (298)
Q Consensus       118 ~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~  197 (298)
                      .....+..+.|+|++++..++.+..+.++.............            +...-.++...         |+..+.
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~------------g~tpL~~A~~~---------g~~~iv  237 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED------------GKTPIMLAAQE---------GRIEVV  237 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT------------CCCHHHHHHHH---------TCHHHH
T ss_pred             cccccccCCCCccccccccccccccccccccccccccccCCC------------CCCHHHHHHHc---------CCHHHH
Confidence            011123456778899988888887765443222111111100            11111222222         677788


Q ss_pred             HHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeE
Q 041054          198 QCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       198 ~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~  232 (298)
                      ..++..+++.+..+..+ ||++.+|-.++..|++++
T Consensus       238 ~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL  273 (277)
T d2fo1e1         238 MYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF  273 (277)
T ss_dssp             HHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            89999888877666666 999999999998888765

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.6e-23  Score=170.55  Aligned_cols=137  Identities=22%  Similarity=0.269  Sum_probs=105.9

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCC-----------------------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGY-----------------------------------   46 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~-----------------------------------   46 (298)
                      .+.+||.+|.+|+||||+|+..|+.+++++|+++|++++..+...                                   
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  107 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT  107 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccc
Confidence            467899999999999999999999999999999999998876411                                   


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccc-cCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHH
Q 041054           47 GCPGSTPLHLAARGGSIDCIRELLAWGADRLHRD-VSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQE  125 (298)
Q Consensus        47 ~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d-~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~  125 (298)
                      ...|.||||+|+..++.+++++|+..|++++..+ .+|.||||+|+..|+.+++++|+++|++          ++.+|.+
T Consensus       108 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----------~~~~~~~  177 (221)
T d1iknd_         108 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----------VNRVTYQ  177 (221)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----------SCCCCTT
T ss_pred             ccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCc----------ccccCCC
Confidence            1235566666666666666666666667766654 4588888888888888888888888887          3556777


Q ss_pred             HHHHHHHHHHhhhHHHHHHHhcC
Q 041054          126 AKALLENALMEANKEREKNILKG  148 (298)
Q Consensus       126 ~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                      |+|||++|+..++.++++.|.+-
T Consensus       178 G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         178 GYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             CCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc
Confidence            88888888888888877777664

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=5e-23  Score=183.69  Aligned_cols=133  Identities=13%  Similarity=0.073  Sum_probs=112.9

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHH---HHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHI---LLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~---Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      +++.+|..|.||||+||.+|+.+++++   |++.|+++|..+.    .|+||||+|+.+|+.++|++|++.|++++..+.
T Consensus        82 ~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~----~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~  157 (346)
T d2ajaa1          82 DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----ENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI  157 (346)
T ss_dssp             HHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----HHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH
T ss_pred             HHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC----CCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence            456788899999999999999887765   7889999999887    899999999999999999999999999998764


Q ss_pred             --CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC
Q 041054           82 --SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG  148 (298)
Q Consensus        82 --~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~  148 (298)
                        +|+||||+|+.+|+.+++++|++.|+++.       ..+..+.++.++++.|+..++.+++++|++.
T Consensus       158 ~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~-------~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         158 QAENYHAFRLAAENGHLHVLNRLCELAPTEA-------TAMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHSCGGGH-------HHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             ccCCCChhHHHHHHhhHHHHHHHHHcCCccc-------ccccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence              59999999999999999999999988631       1344556778889999999999999988765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.8e-22  Score=151.97  Aligned_cols=100  Identities=27%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|.+|.||||+|+ .|+.+++++|+++|++++..+..   .+.||||+|+..|+.+++++|+++|++++.+|.
T Consensus        25 ~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~---~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~  100 (125)
T d1bi7b_          25 AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPA---TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA  100 (125)
T ss_dssp             TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTT---TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT
T ss_pred             cCCccccccccccccccccc-ccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccC
Confidence            57899999999999999775 79999999999999999988772   345799999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccC
Q 041054           82 SGRIPYAVALKHKHGACAALLNPA  105 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~  105 (298)
                      .|+||||+|+.+|+.+++++|+..
T Consensus       101 ~G~T~l~~A~~~g~~~~v~~Llsa  124 (125)
T d1bi7b_         101 WGRLPVDLAEELGHRDVARYLRAA  124 (125)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhc
Confidence            999999999999999999999863

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.3e-22  Score=155.26  Aligned_cols=125  Identities=18%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             HHHHHHHcCChHHHHHHHhCCCCccccCC--CCCCCCChHHHHHHHc---CCHHHHHHHHHcCCCCcccccCCCcHHHHH
Q 041054           16 PLHLAARQRRPECVHILLDSGALVCASTG--GYGCPGSTPLHLAARG---GSIDCIRELLAWGADRLHRDVSGRIPYAVA   90 (298)
Q Consensus        16 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~--~~~~~g~TpLh~A~~~---g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A   90 (298)
                      .|..|++.+++..+..++..|++++....  ..+..|+||||+|+..   ++.++|++|+++|++++.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            45678899999999999999998775421  2234799999999974   788999999999999999999999999999


Q ss_pred             HhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCC
Q 041054           91 LKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTA  150 (298)
Q Consensus        91 ~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~  150 (298)
                      +..|+.+++++|+++|++          ++..|.+|+|||++|+..++.+++++|++..+
T Consensus        89 ~~~~~~~~v~~Ll~~gad----------~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS----------IEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccCcc----------ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            999999999999999999          46678899999999999999999999988554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=4e-22  Score=172.29  Aligned_cols=123  Identities=21%  Similarity=0.267  Sum_probs=84.9

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC-------------------------------------
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG-------------------------------------   45 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~-------------------------------------   45 (298)
                      |+++|.+|.+|+||||+|+..|+.++|++|+++|++.+.....                                     
T Consensus        63 Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  142 (291)
T d1s70b_          63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (291)
T ss_dssp             CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccc
Confidence            6889999999999999999999999999999999876654420                                     


Q ss_pred             ----------------------------------------------------CCCCCChHHHHHHHcCCHHHHHHHHHcC
Q 041054           46 ----------------------------------------------------YGCPGSTPLHLAARGGSIDCIRELLAWG   73 (298)
Q Consensus        46 ----------------------------------------------------~~~~g~TpLh~A~~~g~~~~v~~Ll~~g   73 (298)
                                                                          .+..|.||||+|+..|+.+++++|++.|
T Consensus       143 ~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g  222 (291)
T d1s70b_         143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (291)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             cccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccce
Confidence                                                                1134556666666666666666666666


Q ss_pred             CCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHH
Q 041054           74 ADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALM  135 (298)
Q Consensus        74 ad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~  135 (298)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++          ++.+|..|+|||++|..
T Consensus       223 ~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad----------v~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD----------MEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCTTTSCCS
T ss_pred             ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----------CCCcCCCCCCHHHHHHH
Confidence            66666666666666666666666666666666665          24445556666666643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.3e-21  Score=176.32  Aligned_cols=130  Identities=28%  Similarity=0.336  Sum_probs=122.0

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      ++..++..|..|.||||.|+..++.+++++|+++|++++....    .+.||||+++..++.+++++|++.|++++.+|.
T Consensus       253 ~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~----~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~  328 (408)
T d1n11a_         253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR----MGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK  328 (408)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCS----SCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCT
T ss_pred             cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccc----cccccchhhcccCcceeeeeeccccccccccCC
Confidence            4567888999999999999999999999999999999998887    789999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHH
Q 041054           82 SGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNI  145 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~l  145 (298)
                      +|+||||+|++.|+.+++++|+++|+++          +.+|.+|+|||++|++.++.+++++|
T Consensus       329 ~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~----------n~~d~~G~t~L~~A~~~~~~~iv~~L  382 (408)
T d1n11a_         329 LGYSPLHQAAQQGHTDIVTLLLKNGASP----------NEVSSDGTTPLAIAKRLGYISVTDVL  382 (408)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCS----------CCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999994          56788999999999999999988765

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.5e-21  Score=149.69  Aligned_cols=100  Identities=23%  Similarity=0.257  Sum_probs=91.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++..+.    .|+||||+|+..|+.++|++|+++|++++..+.
T Consensus        23 ~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~----~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~   98 (130)
T d1ycsb1          23 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS----DGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY   98 (130)
T ss_dssp             TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS
T ss_pred             cCCCccccccccccccccccccccccccccccccccccccccc----cCcccccccchhhHHHHHHHHHHcCCCcccccC
Confidence            4789999999999999999999999999999999999998887    899999999999999999999999999998775


Q ss_pred             -CCCcHHHHH--HhcCcHHHHHHhccC
Q 041054           82 -SGRIPYAVA--LKHKHGACAALLNPA  105 (298)
Q Consensus        82 -~g~tpL~~A--~~~~~~~~~~~Ll~~  105 (298)
                       .+.||++++  ...|+.+++++|+..
T Consensus        99 ~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          99 SDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             SSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence             588987765  567889999999764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=9.7e-22  Score=161.35  Aligned_cols=132  Identities=24%  Similarity=0.174  Sum_probs=116.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC------------------------------------
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG------------------------------------   45 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~------------------------------------   45 (298)
                      .|+++|.+|.+|+||||+|+..|+.+++++|+++|++++.....                                    
T Consensus        29 ~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (228)
T d1k1aa_          29 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY  108 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT
T ss_pred             CCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccccccc
Confidence            36789999999999999999999999999999999887765421                                    


Q ss_pred             -------------------------------CCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           46 -------------------------------YGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        46 -------------------------------~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                                                     .+..+.+||++|+..+...+++.+++.|.+++.+|..|.||||+|+..|
T Consensus       109 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         109 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             ccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcC
Confidence                                           1146889999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHH
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREK  143 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~  143 (298)
                      +.+++++|+++|+++          +.+|.+|.|||++|+..++.++++
T Consensus       189 ~~~~v~~Ll~~Gad~----------n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADS----------SLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCT----------TCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCC----------CCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999994          667889999999999999887764

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=4e-21  Score=150.44  Aligned_cols=116  Identities=27%  Similarity=0.338  Sum_probs=93.7

Q ss_pred             cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHH------------------------------
Q 041054           15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSID------------------------------   64 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~------------------------------   64 (298)
                      ||||.||+.|+.++|++||++|++++ .+.    .|+||||+|+..++.+                              
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~----~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDW----LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCT----TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-ccc----CCCccccccccccccccccccccccccccccccccccccccccccc
Confidence            67777777777777777777777655 233    5777777777666554                              


Q ss_pred             ---HHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHH
Q 041054           65 ---CIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKER  141 (298)
Q Consensus        65 ---~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~  141 (298)
                         ++++|+.+|++++.+|..|+||||+|+..|+.+++++|+++|++          ++..|.+|.|||++|+..++.++
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----------~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----------VHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccC----------CcccCCCCCCHHHHHHHcCCHHH
Confidence               55555567788999999999999999999999999999999999          46678899999999999999999


Q ss_pred             HHHH
Q 041054          142 EKNI  145 (298)
Q Consensus       142 ~~~l  145 (298)
                      +++|
T Consensus       149 v~lL  152 (153)
T d1awcb_         149 AEIL  152 (153)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-22  Score=167.50  Aligned_cols=194  Identities=15%  Similarity=0.123  Sum_probs=146.5

Q ss_pred             CCCcHHHHHHHcCChH----HHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHH
Q 041054           12 RGATPLHLAARQRRPE----CVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPY   87 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL   87 (298)
                      +|.||||+|+..|+.+    ++++|...|+++|.++.    .|+||||+|+..|+.+++++|++.|++++.+|..|.|||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~----~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN----LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT----TCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC----CCCcccccccccccccccccccccccccccccccccccc
Confidence            6999999999999864    45566678999998887    899999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcC-CCCCCCCCCCCCCCCccc
Q 041054           88 AVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKG-TAYSLPSPSHSDVGADDN  166 (298)
Q Consensus        88 ~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~-~~~~~~~p~~~~~~~~~~  166 (298)
                      ++|+..++.+++++|+..+.......    ........+.|+|+.|+..++.+.+..+... ........  ..      
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~--~~------  144 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHS----ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP--CN------  144 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSC----GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT--TT------
T ss_pred             ccccccccccccchhhhhcccccccc----cccccccccchhhhHHhhcCChhheeeecccCcccccccc--cC------
Confidence            99999999999999999877643321    1233444577999999999999977776553 33221110  00      


Q ss_pred             ccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CCCCCCCcccccccceeEEEE
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CLTPPVCPFCRSTIAHLVVVK  235 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~~~~~Cp~cr~~I~~~~~~~  235 (298)
                           +...-.++..         .||..|.+.++..+++.+..+..+ ||++.+|-.....+.+++...
T Consensus       145 -----G~T~L~~A~~---------~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         145 -----GRTALHLAVD---------LQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             -----CCCHHHHHHH---------TTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             -----CCCccccccc---------cccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence                 1111122222         388899999999888887666666 999999998888888776553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.8e-22  Score=151.16  Aligned_cols=94  Identities=29%  Similarity=0.306  Sum_probs=86.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      .|.++|.+|..|+||||+|+..|+.+++++|+++|++++.++.    .|+||||+|+..|+.++|++|+++|+|++.+|.
T Consensus        24 ~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~----~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~   99 (118)
T d1myoa_          24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK----HHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP   99 (118)
T ss_dssp             TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSS----SCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSS
T ss_pred             hhhccccccccccccccccccccccccccccccccceeeeccc----ccccchhhhhhcCchhhhhhhhcccccceeeCC
Confidence            5789999999999999999999999999999999999999887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHhc
Q 041054           82 SGRIPYAVALKHKHGACAALLN  103 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~Ll  103 (298)
                      +|.||||+|..    +.++.|+
T Consensus       100 ~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_         100 DGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             STCCCCCTCSS----TTTGGGG
T ss_pred             CCCCHHHHHhH----HHHHHhc
Confidence            99999998832    3445554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=9.4e-22  Score=171.87  Aligned_cols=118  Identities=19%  Similarity=0.128  Sum_probs=97.8

Q ss_pred             CCCcccC-CCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCH-------HHHHHH-----
Q 041054            3 ARFVNIR-DGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSI-------DCIREL-----   69 (298)
Q Consensus         3 ~~~vn~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~-------~~v~~L-----   69 (298)
                      +.++|.. |.+|+||||+||..|+.++|++||++|++++.++.    .|+||||+|+..++.       +++++|     
T Consensus        96 ~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~----~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~  171 (301)
T d1sw6a_          96 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----MGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  171 (301)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----TCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             CCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc----ccccHHHHhhhcccchhhhhHHHHHHHHhhhhh
Confidence            3467766 99999999999999999999999999999999887    899999999976541       233322     


Q ss_pred             -------------------------------------HHcCC-------------------------------------C
Q 041054           70 -------------------------------------LAWGA-------------------------------------D   75 (298)
Q Consensus        70 -------------------------------------l~~ga-------------------------------------d   75 (298)
                                                           +..+.                                     .
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence                                                 22111                                     1


Q ss_pred             CcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHH
Q 041054           76 RLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENAL  134 (298)
Q Consensus        76 ~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~  134 (298)
                      +|.+|.+|+||||+|++.|+.+++++|+++|+++          +..|..|+|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~----------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADP----------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT----------TCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----------CCCCCCCCCHHHHcC
Confidence            6778999999999999999999999999999994          567888999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.8e-20  Score=156.10  Aligned_cols=142  Identities=22%  Similarity=0.200  Sum_probs=121.9

Q ss_pred             CCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCC----------------------------------CCC
Q 041054            3 ARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGG----------------------------------YGC   48 (298)
Q Consensus         3 ~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~----------------------------------~~~   48 (298)
                      +.+++.+|.+|+||||+|+..|+.+++++||++|++++..+..                                  .+.
T Consensus        24 ~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (229)
T d1ixva_          24 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN  103 (229)
T ss_dssp             GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCT
T ss_pred             CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5689999999999999999999999999999999998754321                                  124


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHH
Q 041054           49 PGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSPLKFISELNQEAKA  128 (298)
Q Consensus        49 ~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t  128 (298)
                      .+.|+|++++..++.+++++|++.|.+.+.+|..|+||||+|+..++.+++++|++.+...         ++..+.+|.|
T Consensus       104 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~---------in~~d~~g~T  174 (229)
T d1ixva_         104 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---------VNWQDKQGWT  174 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC---------SCCCCTTSCC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc---------ccccccccCC
Confidence            5778888888889999999999999999999999999999999999999999999987542         4567788999


Q ss_pred             HHHHHHHhhhHHHHHHHhc--CCCCCC
Q 041054          129 LLENALMEANKEREKNILK--GTAYSL  153 (298)
Q Consensus       129 ~L~~A~~~~~~~~~~~ll~--~~~~~~  153 (298)
                      |||+|+..++.++++.|+.  |+++..
T Consensus       175 pLh~A~~~~~~~~v~~Ll~~~gad~~~  201 (229)
T d1ixva_         175 PLFHALAEGHGDAAVLLVEKYGAEYDL  201 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHCCCSCC
T ss_pred             chhhhcccccHHHHHHHHHhcCCCCCC
Confidence            9999999999999998773  566543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.8e-21  Score=149.64  Aligned_cols=120  Identities=24%  Similarity=0.173  Sum_probs=111.0

Q ss_pred             cHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcC
Q 041054           15 TPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHK   94 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~   94 (298)
                      +|||+||..|+.++|++|+++|++++..+.    .|+||||+|+ .|+.+++++|++.|++++.++..|.++|+.++..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~----~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~   77 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG----FGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   77 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----TSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC----cccccccccc-cccccccccccccccccccccccCccccccccccc
Confidence            899999999999999999999999999887    8999999886 78999999999999999999999999999999999


Q ss_pred             cHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054           95 HGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus        95 ~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                      +.+++++|+.++.+          ++..+..+.++|+.|...++.+.++.|++..
T Consensus        78 ~~~~~~~l~~~~~~----------~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_          78 FLDTLQTLLEFQAD----------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             CHHHHHHHHHTTCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             cccccccccccccc----------ccccccccccccccccccccccccccccccc
Confidence            99999999999887          4556778899999999999999888876644

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.82  E-value=2.7e-22  Score=178.84  Aligned_cols=105  Identities=12%  Similarity=0.079  Sum_probs=90.6

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCc---c
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRL---H   78 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~---~   78 (298)
                      +++++|.+|.+|+||||+||++||.++|++|+++|++++..+..  ..|+||||+|+..|+.++|++|++.|++..   .
T Consensus       115 ~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~--~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~  192 (346)
T d2ajaa1         115 SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ--AENYHAFRLAAENGHLHVLNRLCELAPTEATAMI  192 (346)
T ss_dssp             CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS--HHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHH
T ss_pred             CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccc--cCCCChhHHHHHHhhHHHHHHHHHcCCccccccc
Confidence            57899999999999999999999999999999999999876521  158999999999999999999999998753   3


Q ss_pred             cccCCCcHHHHHHhcCcHHHHHHhccCCCC
Q 041054           79 RDVSGRIPYAVALKHKHGACAALLNPASAE  108 (298)
Q Consensus        79 ~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~  108 (298)
                      .+.++.||++.|+.+|+.+++++|++.|++
T Consensus       193 ~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         193 QAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             ccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            445677888999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.4e-19  Score=148.27  Aligned_cols=192  Identities=19%  Similarity=0.122  Sum_probs=136.0

Q ss_pred             CCCCcHHHHHHHcCChHHHHHHHh----CCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcH
Q 041054           11 GRGATPLHLAARQRRPECVHILLD----SGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIP   86 (298)
Q Consensus        11 ~~G~TpLh~Aa~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp   86 (298)
                      .+|+||||+||.+|+.++|+.|++    .|++++..+.    .|+||||+|+..|+.+++++|+++|++++..+..+.++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~----~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~   76 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----LRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTA   76 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC----CCCccceehhcccccccccccccccccccccccccccc
Confidence            369999999999999999998874    7999998887    89999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHhccCCCCCCCCC--------CChh--------------------hhhHhhHHHHHHHHHHHHhhh
Q 041054           87 YAVALKHKHGACAALLNPASAEPLVWP--------SPLK--------------------FISELNQEAKALLENALMEAN  138 (298)
Q Consensus        87 L~~A~~~~~~~~~~~Ll~~ga~~~~~~--------~~~~--------------------~~~~~~~~~~t~L~~A~~~~~  138 (298)
                      ++.|....+.++++.+...........        .+..                    ........+.++|+.|+..+.
T Consensus        77 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~  156 (228)
T d1k1aa_          77 AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS  156 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhh
Confidence            999999999988887755433211110        0000                    001113345667777777777


Q ss_pred             HHHHHHHhcCCC-CCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCC-CC
Q 041054          139 KEREKNILKGTA-YSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTA-CL  216 (298)
Q Consensus       139 ~~~~~~ll~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~-~~  216 (298)
                      ..+.+.+++... ....     +         ..+.....++..         .||..+...++..+++.+..+..+ ||
T Consensus       157 ~~~~~~~~~~~~~~~~~-----d---------~~g~t~L~~A~~---------~g~~~~v~~Ll~~Gad~n~~d~~G~Tp  213 (228)
T d1k1aa_         157 LSMVQLLLQHGANVNAQ-----M---------YSGSSALHSASG---------RGLLPLVRTLVRSGADSSLKNCHNDTP  213 (228)
T ss_dssp             HHHHHHHHHTTCCTTCB-----C---------TTSCBHHHHHHH---------HTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             hhhhhhhhhhccccccc-----c---------ccCcchHHHHHH---------cCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            776666554322 1110     0         001111122222         378888899999888877665556 99


Q ss_pred             CCCCCcccccccc
Q 041054          217 TPPVCPFCRSTIA  229 (298)
Q Consensus       217 ~~~~Cp~cr~~I~  229 (298)
                      ++.++-..+..|+
T Consensus       214 L~~A~~~~~~div  226 (228)
T d1k1aa_         214 LMVARSRRVIDIL  226 (228)
T ss_dssp             TTTCSSHHHHHHH
T ss_pred             HHHHHhCCCcccc
Confidence            9999876665543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.3e-20  Score=167.03  Aligned_cols=94  Identities=31%  Similarity=0.332  Sum_probs=88.7

Q ss_pred             CcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhc
Q 041054           14 ATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH   93 (298)
Q Consensus        14 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~   93 (298)
                      .||||+||..|+.++|++||++|+++|..+.    .|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|+..
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~----~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~   76 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNV----KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI   76 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS----CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCC----CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc
Confidence            4999999999999999999999999999887    899999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHhccCCCCCCC
Q 041054           94 KHGACAALLNPASAEPLV  111 (298)
Q Consensus        94 ~~~~~~~~Ll~~ga~~~~  111 (298)
                      |+.+++++|+..+.++..
T Consensus        77 g~~~~~~~Ll~~~~~~~~   94 (408)
T d1n11a_          77 GHTNMVKLLLENNANPNL   94 (408)
T ss_dssp             TCHHHHHHHHHHTCCTTC
T ss_pred             CCHHHHHHHHHhhhcccc
Confidence            999999999887766543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.4e-19  Score=148.51  Aligned_cols=97  Identities=37%  Similarity=0.371  Sum_probs=93.3

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q 041054            2 YARFVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDV   81 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~   81 (298)
                      ++.+++.+|..|+|||++|+..+..++++.|++.+.+++..+.    .|.||||+|+..|+.++|++|+++|+|++.+|.
T Consensus       112 ~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~----~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~  187 (209)
T d1ot8a_         112 ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDD----KDETPLFLAAREGSYEASKALLDNFANREITDH  187 (209)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             hcccccccCCCCCCcchhhcccCcceeeeeecccccccccccc----ccccccchhccccHHHHHHHHHHCCCCCCCcCC
Confidence            4678899999999999999999999999999999999998887    899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHh
Q 041054           82 SGRIPYAVALKHKHGACAALL  102 (298)
Q Consensus        82 ~g~tpL~~A~~~~~~~~~~~L  102 (298)
                      .|+||||+|+++|+.+++++|
T Consensus       188 ~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         188 MDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.80  E-value=1.4e-19  Score=156.07  Aligned_cols=183  Identities=18%  Similarity=0.129  Sum_probs=136.2

Q ss_pred             CCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHH
Q 041054           12 RGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVAL   91 (298)
Q Consensus        12 ~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~   91 (298)
                      .|.||||.||..|+.++|++||++|+++|..+.    .|+||||+|+..|+.++|++|+++|++....+..+.|||++|+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~----~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~  114 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANV----DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCC----CCCcHHHHHHhcCCceeeeeecccccccccccccccccccccc
Confidence            466999999999999999999999999998887    8999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHhccCCCCCCCCCC----Chhh-------------h---------------------------------hH
Q 041054           92 KHKHGACAALLNPASAEPLVWPS----PLKF-------------I---------------------------------SE  121 (298)
Q Consensus        92 ~~~~~~~~~~Ll~~ga~~~~~~~----~~~~-------------~---------------------------------~~  121 (298)
                      ..++.++++.|+++|+.......    +..+             +                                 ..
T Consensus       115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (291)
T d1s70b_         115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (291)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             cccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccc
Confidence            99999999999999887544321    1100             0                                 00


Q ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHhcCC-CCCCCCCCCCCCCCcccccccCCCcccccccccccceEEeCCCchhHHHHH
Q 041054          122 LNQEAKALLENALMEANKEREKNILKGT-AYSLPSPSHSDVGADDNISEASDTELCCICFEQVCTIEVQDCGHQMCAQCT  200 (298)
Q Consensus       122 ~~~~~~t~L~~A~~~~~~~~~~~ll~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~  200 (298)
                      .+..+.|+|+.|+..++.++++.|++.+ ++......              +...-.+..         -.||..++..+
T Consensus       195 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~--------------g~TpL~~A~---------~~g~~~iv~lL  251 (291)
T d1s70b_         195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD--------------GWTPLHAAA---------HWGKEEACRIL  251 (291)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT--------------CCCHHHHHH---------HTTCHHHHHHH
T ss_pred             ccCCCCChhhHHHHcCChhhhcccccceecccccccC--------------CCCHHHHHH---------HcCCHHHHHHH
Confidence            1344567788888888888777766543 32211110              000001111         13777788888


Q ss_pred             HHHhhcCCCCCCCC-CCCCCCC
Q 041054          201 LALCCHNKPNPTTA-CLTPPVC  221 (298)
Q Consensus       201 ~~l~~~~~~~~~~~-~~~~~~C  221 (298)
                      +..+++.+..+..+ ||++.+.
T Consensus       252 l~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         252 VENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHTTCCTTCCCTTSCCTTTSCC
T ss_pred             HHCCCCCCCcCCCCCCHHHHHH
Confidence            88877777665555 8888875

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.3e-19  Score=142.64  Aligned_cols=123  Identities=21%  Similarity=0.103  Sum_probs=112.4

Q ss_pred             cHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhc
Q 041054           15 TPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKH   93 (298)
Q Consensus        15 TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~   93 (298)
                      +.||.||..|+.++|+.||+. +++++..+.    .|+||||+|+. ++.+++++|++.+++++..+..|.+|+++++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~----~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR----FGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----TSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC----CCCcccccccc-ccccccccccccccccccccccccccccccccc
Confidence            469999999999999999986 789988887    89999999874 889999999999999999999999999999999


Q ss_pred             CcHHHHHHhccCCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCCCCC
Q 041054           94 KHGACAALLNPASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILKGTAYS  152 (298)
Q Consensus        94 ~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~~~~  152 (298)
                      ++.+++++++++|+++          +..+.++.||||+|+..++.+++++|++++++.
T Consensus        79 ~~~~~~~~~l~~~~~~----------n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~  127 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADV----------NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH  127 (156)
T ss_dssp             TCHHHHHHHHHTTCCS----------CCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTT
T ss_pred             cccccccccccccccc----------ccccCCCCeeecccccccccccccccccccccc
Confidence            9999999999999983          556788999999999999999999998877643

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.2e-19  Score=151.11  Aligned_cols=131  Identities=29%  Similarity=0.259  Sum_probs=113.7

Q ss_pred             cCCCCCCcHHHHHHHcCChHHHHHHHhC-CCCccccCCCCCCCCChHHHHHHH----cCCHHHHHHHHHcCCCCcccccC
Q 041054            8 IRDGRGATPLHLAARQRRPECVHILLDS-GALVCASTGGYGCPGSTPLHLAAR----GGSIDCIRELLAWGADRLHRDVS   82 (298)
Q Consensus         8 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~~~~~~~~g~TpLh~A~~----~g~~~~v~~Ll~~gad~~~~d~~   82 (298)
                      ..+..|.||||+|++.|+.+++++|+++ |++++..+.    .|.++++.+..    .+..+++++|+++|++++.+|..
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~  218 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN----MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCT----TSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccC----CCCcccccccccccchHHHHHHHHHHHCCCCCCccCCC
Confidence            4567799999999999999999999976 899988877    78888877654    33457999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHhccC-CCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc-CCCCC
Q 041054           83 GRIPYAVALKHKHGACAALLNPA-SAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK-GTAYS  152 (298)
Q Consensus        83 g~tpL~~A~~~~~~~~~~~Ll~~-ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~-~~~~~  152 (298)
                      |.||||+|+..++.+++++|+++ |++          ++.+|.+|.||||+|+..++.+++++|++ |++++
T Consensus       219 g~t~L~~a~~~~~~~~v~~lL~~~g~d----------in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         219 GKTPLILAVEKKHLGLVQRLLEQEHIE----------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCC----------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             CCCccchhhhcCcHHHHHHHHHcCCCC----------CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            99999999999999999999974 887          56788899999999999999999988765 66644

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3.8e-19  Score=147.98  Aligned_cols=126  Identities=30%  Similarity=0.327  Sum_probs=110.8

Q ss_pred             CcccCCCCCCcHHHHHHHcCChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHcC-CCCcccccCC
Q 041054            5 FVNIRDGRGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAWG-ADRLHRDVSG   83 (298)
Q Consensus         5 ~vn~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~g-ad~~~~d~~g   83 (298)
                      +....+..+.|+|+.++..++.+++++|+..|.+.+..+.    .|+||||+|+..|+.+++++|++.+ .+++.+|.+|
T Consensus        97 ~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~----~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g  172 (229)
T d1ixva_          97 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK----FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG  172 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT----TSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTS
T ss_pred             cccccccccccccccccccchhhhhhhhhhhcccccccCC----CCCCccchhhhccccccccccccccccccccccccc
Confidence            4556778899999999999999999999999988887776    8999999999999999999999997 6889999999


Q ss_pred             CcHHHHHHhcCcHHHHHHhcc-CCCCCCCCCCChhhhhHhhHHHHHHHHHHHHhhhHHHHHHHhc
Q 041054           84 RIPYAVALKHKHGACAALLNP-ASAEPLVWPSPLKFISELNQEAKALLENALMEANKEREKNILK  147 (298)
Q Consensus        84 ~tpL~~A~~~~~~~~~~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~  147 (298)
                      +||||+|+..++.+++++|++ +|++          ++.+|.+|+|||++|+.   .+++++|++
T Consensus       173 ~TpLh~A~~~~~~~~v~~Ll~~~gad----------~~~~d~~g~t~l~~A~~---~~~~~~Ll~  224 (229)
T d1ixva_         173 WTPLFHALAEGHGDAAVLLVEKYGAE----------YDLVDNKGAKAEDVALN---EQVKKFFLN  224 (229)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHCCC----------SCCCCTTSCCTGGGCSC---HHHHHHHHH
T ss_pred             CCchhhhcccccHHHHHHHHHhcCCC----------CCCcCCCCCCHHHHHhh---HHHHHHHHH
Confidence            999999999999999999996 5998          46678889999999874   356666664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=2.1e-18  Score=134.68  Aligned_cols=98  Identities=23%  Similarity=0.142  Sum_probs=79.6

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCCCCC----h----------
Q 041054           51 STPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVWPSP----L----------  116 (298)
Q Consensus        51 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~~~~----~----------  116 (298)
                      .||||.|++.|+.++|++||++|++++ .|..|+||||+|+..++.+++..++............    .          
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            399999999999999999999999987 6899999999999999999988887765554332110    0          


Q ss_pred             ---------hhhhHhhHHHHHHHHHHHHhhhHHHHHHHhcCC
Q 041054          117 ---------KFISELNQEAKALLENALMEANKEREKNILKGT  149 (298)
Q Consensus       117 ---------~~~~~~~~~~~t~L~~A~~~~~~~~~~~ll~~~  149 (298)
                               ......+.+|.|||++|+..++.+++++|++.+
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g  123 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhheeeeccccc
Confidence                     012334788999999999999999999887753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.6e-17  Score=142.09  Aligned_cols=107  Identities=27%  Similarity=0.246  Sum_probs=97.1

Q ss_pred             CCCCcccCCCCCCcHHHHHHHcC----ChHHHHHHHhCCCCccccCCCCCCCCChHHHHHHHcCCHHHHHHHHHc-CCCC
Q 041054            2 YARFVNIRDGRGATPLHLAARQR----RPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSIDCIRELLAW-GADR   76 (298)
Q Consensus         2 ~~~~vn~~d~~G~TpLh~Aa~~g----~~~~v~~Ll~~ga~~~~~~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~-gad~   76 (298)
                      .+.+++..|..|.++++.+...+    ..+++++|+++|++++..+.    .|.||||+|+..|+.++|++|++. |+++
T Consensus       171 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~----~g~t~L~~a~~~~~~~~v~~lL~~~g~di  246 (285)
T d1wdya_         171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE----RGKTPLILAVEKKHLGLVQRLLEQEHIEI  246 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCT----TSCCHHHHHHHTTCHHHHHHHHHSSSCCT
T ss_pred             cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCC----CCCCccchhhhcCcHHHHHHHHHcCCCCC
Confidence            36789999999999998876554    45789999999999998777    899999999999999999999985 9999


Q ss_pred             cccccCCCcHHHHHHhcCcHHHHHHhccCCCCCCCC
Q 041054           77 LHRDVSGRIPYAVALKHKHGACAALLNPASAEPLVW  112 (298)
Q Consensus        77 ~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~ga~~~~~  112 (298)
                      +.+|.+|.||||+|++.++.+++++|+++||+++..
T Consensus       247 n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999999999999999999999997653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=2.7e-15  Score=130.25  Aligned_cols=57  Identities=23%  Similarity=0.326  Sum_probs=50.9

Q ss_pred             CCCCcccc-CCCCCCCCChHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCcHHHHHHhcCc
Q 041054           35 SGALVCAS-TGGYGCPGSTPLHLAARGGSIDCIRELLAWGADRLHRDVSGRIPYAVALKHKH   95 (298)
Q Consensus        35 ~ga~~~~~-~~~~~~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~   95 (298)
                      .+.++|.. |.    .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++
T Consensus        95 ~~~dvn~~~D~----~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          95 TQLNLNIPVDE----HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             SCCCSCSCCST----TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCCcCcCcCC----CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhccc
Confidence            46677754 44    89999999999999999999999999999999999999999998664

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.2e-08  Score=69.41  Aligned_cols=50  Identities=34%  Similarity=0.749  Sum_probs=41.2

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ...|.||++...++...+|||.||..|+..+-...          ...||+||..|....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~----------~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE----------GQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT----------CCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC----------cCcCCCCCcCccCCc
Confidence            45799999999999999999999999997763322          257999999987654

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.49  E-value=2.7e-08  Score=65.66  Aligned_cols=50  Identities=30%  Similarity=0.705  Sum_probs=39.7

Q ss_pred             CCcccccccccccce-EEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          172 DTELCCICFEQVCTI-EVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~-~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ..+.|.||++..... ...+|||.||..|+..+....           ..||+||.+|..+.
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-----------~~CP~CR~~i~~~~   54 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-----------PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-----------CSTTTTCCCCCCEE
T ss_pred             CCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-----------CcCCCCCcchHhhc
Confidence            356799999987654 558999999999998875432           57999999987654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.9e-08  Score=63.72  Aligned_cols=49  Identities=27%  Similarity=0.613  Sum_probs=37.6

Q ss_pred             CCcccccccccc-----cceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQV-----CTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~-----~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++..     ..+...+|||.+|..|+..+..+..          ..||.||..|.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~----------~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA----------GNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS----------SSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc----------CCCCCCCcCccc
Confidence            457899999752     2246679999999999988865443          469999988864

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=7e-08  Score=66.41  Aligned_cols=49  Identities=24%  Similarity=0.456  Sum_probs=40.5

Q ss_pred             CCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          172 DTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      +...|.||++...+....+|||.||..|+........          ..||.||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~----------~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMG----------SYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC----------SBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCC----------CcCcccCCCCCh
Confidence            3468999999999999999999999999987754332          579999987653

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=5.1e-08  Score=61.46  Aligned_cols=43  Identities=21%  Similarity=0.524  Sum_probs=36.3

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ...|.||++...+....+|||.||..|+.     .+         ...||+||+.|.
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~-----~~---------~~~CP~Cr~~~~   48 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLE-----AS---------GMQCPICQAPWP   48 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCS-----SS---------SSSCSSCCSSSS
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHH-----cC---------CCcCcCCCCccc
Confidence            46899999999999999999999999973     12         357999998875

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2.8e-07  Score=65.92  Aligned_cols=49  Identities=33%  Similarity=0.740  Sum_probs=39.9

Q ss_pred             CcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ...|.||++....+...+|||.||..|+..+....+.        ...||.||..+.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG--------PSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS--------SCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCC--------CCcCcCCCCcCC
Confidence            3569999999988888999999999999887654431        247999998774

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.16  E-value=4.4e-07  Score=56.86  Aligned_cols=46  Identities=26%  Similarity=0.666  Sum_probs=34.7

Q ss_pred             Ccccccccccccc---eEE-eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          173 TELCCICFEQVCT---IEV-QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       173 ~~~C~IC~~~~~~---~~~-~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      ...|.||++....   +.. .+|||.||..|+..+-           ..+..||+||..|.
T Consensus         5 ~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl-----------~~~~~CP~CR~~i~   54 (55)
T d1iyma_           5 GVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL-----------GSHSTCPLCRLTVV   54 (55)
T ss_dssp             SCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTT-----------TTCCSCSSSCCCSC
T ss_pred             CCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHH-----------HhCCcCCCCCCEeE
Confidence            4569999988643   333 4699999999997772           23367999998874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4e-07  Score=56.40  Aligned_cols=46  Identities=26%  Similarity=0.627  Sum_probs=33.8

Q ss_pred             ccccccccccc----eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccce
Q 041054          175 LCCICFEQVCT----IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAH  230 (298)
Q Consensus       175 ~C~IC~~~~~~----~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~  230 (298)
                      .|.||++....    +...+|||.+|..|+..+..+.+          ..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~----------~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN----------GLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC----------CBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC----------CCCCccCCcCCC
Confidence            58999886422    34458999999999988743332          579999988753

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.4e-06  Score=63.31  Aligned_cols=50  Identities=28%  Similarity=0.667  Sum_probs=36.8

Q ss_pred             Cccccccccccc------------------ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccc
Q 041054          173 TELCCICFEQVC------------------TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTI  228 (298)
Q Consensus       173 ~~~C~IC~~~~~------------------~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I  228 (298)
                      .+.|.||++...                  .+...+|||.||..|+..+-.+..      ...+..||+||+.+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~------~~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGN------KDGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTC------CSSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcC------cCCCCccccccchh
Confidence            457999998743                  245678999999999988754432      22346899999766

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=1.8e-06  Score=58.21  Aligned_cols=54  Identities=15%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEE
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVV  233 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~  233 (298)
                      .+++..|.||++-..+.+..+|||.+|..|+..+.....          ..||.|+..+....+
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~----------~~cP~~~~~l~~~~l   58 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH----------KTCPKSQETLLHAGL   58 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC----------CBCTTTCCBCSSCCC
T ss_pred             CCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCC----------CCCCcccccCCcccc
Confidence            446789999999999999999999999999987643322          579999988765433

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.1e-06  Score=59.53  Aligned_cols=52  Identities=15%  Similarity=0.019  Sum_probs=42.9

Q ss_pred             cCCCcccccccccccceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          170 ASDTELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       170 ~~~~~~C~IC~~~~~~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      .++...|.||++-..+.+..+|||.+|..|+........          ..||+|+..|...
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~----------~~cP~c~~~l~~~   55 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG----------HFNPVTRSPLTQE   55 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC----------SSCTTTCCCCCGG
T ss_pred             CCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCC----------ccCCCcccccccc
Confidence            346788999999999999999999999999988754433          5699999887643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=9.8e-07  Score=55.48  Aligned_cols=51  Identities=12%  Similarity=0.044  Sum_probs=41.9

Q ss_pred             ccccccccccceEEe-CCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeEEEEe
Q 041054          175 LCCICFEQVCTIEVQ-DCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLVVVKI  236 (298)
Q Consensus       175 ~C~IC~~~~~~~~~~-~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~~~~~  236 (298)
                      .|.||++...+.+.. .|||.||..|+..+-...           ..||+||.+++.-.+..+
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-----------~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-----------GNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-----------SBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-----------cCCCccCCcCCHHhceeC
Confidence            699999999998877 499999999998885554           579999999887655544

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=1.7e-06  Score=60.93  Aligned_cols=45  Identities=20%  Similarity=0.473  Sum_probs=35.4

Q ss_pred             CCcccccccccccceEE-eCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEV-QDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~-~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++.....+. .+|||.||..|+..+             +...||.||..+.
T Consensus        21 ~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~-------------~~~~CP~Cr~~~~   66 (97)
T d1jm7b_          21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDC-------------IGTGCPVCYTPAW   66 (97)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGG-------------TTTBCSSSCCBCS
T ss_pred             hcCCCccCCchhhcCceeCCCCCchhHHHHHHH-------------HhccccccCCcCc
Confidence            45689999999888765 589999999998554             1245999997764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=1.4e-05  Score=55.03  Aligned_cols=34  Identities=24%  Similarity=0.401  Sum_probs=27.1

Q ss_pred             ceEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          185 TIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       185 ~~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      .+...+|||.|+..|+...-           ..+..||+||++.+
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl-----------~~~~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWL-----------KTRQVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHH-----------TTCSBCSSSCSBCC
T ss_pred             CeEEccccCcccHHHHHHHH-----------HHCCcCCCCCCccc
Confidence            35678899999999998882           33467999998765

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=97.41  E-value=3.2e-05  Score=48.96  Aligned_cols=49  Identities=18%  Similarity=0.471  Sum_probs=36.6

Q ss_pred             CCcccccccccccceEEeCC-----CchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccc
Q 041054          172 DTELCCICFEQVCTIEVQDC-----GHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIA  229 (298)
Q Consensus       172 ~~~~C~IC~~~~~~~~~~~C-----GH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~  229 (298)
                      +...|.||++........+|     +|.++..|+..+-....         ...||+||+++.
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~---------~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR---------NTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT---------CSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCC---------CCCCcccCCeee
Confidence            56789999987666655665     59999999988754332         257999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00027  Score=49.22  Aligned_cols=54  Identities=19%  Similarity=0.108  Sum_probs=43.9

Q ss_pred             ccccCCCcccccccccccceEEeCCCc-hhHHHHHHHHhhcCCCCCCCCCCCCCCCccccccccee
Q 041054          167 ISEASDTELCCICFEQVCTIEVQDCGH-QMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHL  231 (298)
Q Consensus       167 ~~~~~~~~~C~IC~~~~~~~~~~~CGH-~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~  231 (298)
                      ..+.++...|.||.+-..+.+..+||| .+|..|+..+...           ...||+|+.+|...
T Consensus        16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-----------~~~~P~~~~~l~~~   70 (98)
T d1wgma_          16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-----------DQTDPFNRSPLTMD   70 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-----------SCBCTTTCSBCCTT
T ss_pred             hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-----------cCCcccccccccch
Confidence            455677899999999999999999876 6899999887322           35799999988653

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0015  Score=44.81  Aligned_cols=51  Identities=16%  Similarity=0.320  Sum_probs=33.9

Q ss_pred             CCcccccccccccc---eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccc
Q 041054          172 DTELCCICFEQVCT---IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCR  225 (298)
Q Consensus       172 ~~~~C~IC~~~~~~---~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr  225 (298)
                      +...|.||++....   +...+|||.+|..|+.......-.   .+......||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~---~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK---EGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH---HCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHh---cCCccccCCcCCC
Confidence            46789999998643   455689999999999766432200   0122346899764

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.42  E-value=1.4  Score=28.39  Aligned_cols=51  Identities=25%  Similarity=0.621  Sum_probs=37.9

Q ss_pred             CCcccccccccccc-------eEEeCCCchhHHHHHHHHhhcCCCCCCCCCCCCCCCcccccccceeE
Q 041054          172 DTELCCICFEQVCT-------IEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPVCPFCRSTIAHLV  232 (298)
Q Consensus       172 ~~~~C~IC~~~~~~-------~~~~~CGH~~C~~C~~~l~~~~~~~~~~~~~~~~~Cp~cr~~I~~~~  232 (298)
                      ....|.||-+..-.       +....|+--+|..|...=....+          ..||.|.+...++.
T Consensus        15 ~~q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~----------q~CpqCkt~Ykr~k   72 (93)
T d1weoa_          15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT----------QNCPQCKTRYKRLR   72 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC----------SSCTTTCCCCCCCT
T ss_pred             ccchhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccC----------ccCcccCChhhhhc
Confidence            45789999887442       45556898899999866544554          89999998877643