Citrus Sinensis ID: 041061

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
Protein Sequence
MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGLSKERKKNVN
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHcccHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHcccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccEEHHHHHccHHHHHHHHHHccccHHHEEEEEEccccccEEHEEccccccccccccHHHHHHHHHHHHHHHHHHHccccHEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHccHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MLSTVNQKGQTILHVAVRRRRHDIFQFIVekmplyvpkwaaridengYTILHHVADMkhyeygirpgpvyqfQEELQWFEcvkdiapshytmhrdtrknmtagdlfnrtHEDQLKKAQDWIKETSESCSILSILIATFVFAAaytvpggnndkgfpnfldspmfyLFTITDVASLSLSLSSAVMFLSILtspressdfldhLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALplygnfekGLNHYLGLSKERKKNVN
Flexible Loop (DISEMBL)
mlstvnqkgqtilhvavrrRRHDIFQFIvekmplyvPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNhylglskerkknvn
Low Complexity Region (SEG)
MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVAslslslssAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTvalyaaailpvillalialplyGNFEKGLNHYLGLSKERKKNVN
Disordered region (IsUnstruct)
*********QTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHR********GDLFN********KAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGL*********
Disordered Region (DISOPRED)
MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGL**E******
Disordered Region (DISEMBL)
*********QTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGLSKERKKNVN
Disordered Region (DISPRO)
MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGLSKERKK***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYAAAILPVILLALIALPLYGNFEKGLNHYLGLSKERKKNVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	283	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.752	0.361	0.213	2e-07
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.597	0.322	0.240	0.0002

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/248 (21%), Positives = 111/248 (44%), Gaps = 35/248 (14%)

Query: 11  TILHVAVRRRRHDIFQFIVE-------------KMPLYVPKWAARIDENGYTILHHVADM 57
           T LHVA R++R +I + ++              K  L + +     +E+ Y     + + 
Sbjct: 302 TALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSY-----IKEC 356

Query: 58  KHYEYGIRPGPVYQFQEELQWF--ECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLK 115
                 +R   + Q ++EL+    +   D+   H  + +  R N    ++       +L+
Sbjct: 357 LARSGALRANELNQPRDELRSTVTQIKNDV---HIQLEQTKRTNKNVHNI-----SKELR 408

Query: 116 KA-QDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVAS 174
           K  ++ I   + S +++++L AT  FAA +TVPGG+N+ G    +    F +F I +  +
Sbjct: 409 KLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALA 468

Query: 175 LSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARL 234
           L  SL+  V+ ++++    ++        R +++   L++L+ + + + F AS  +V   
Sbjct: 469 LFTSLAVVVVQITLVRGETKAE------KRVVEVINKLMWLASMCTSVAFLASSYIVVGR 522

Query: 235 GERWTVAL 242
              W   L
Sbjct: 523 KNEWAAEL 530

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 39/208 (18%)

Query: 1   MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY 60
           ++++ + KG T LH+AVR+ R +I Q +++    Y       ++++G T L        +
Sbjct: 219 LINSADNKGNTPLHIAVRKNRAEIVQTVLK----YCEVSRVAVNKSGETALDIAEKTGLH 274

Query: 61  EY-------------GIRPG-PVYQFQEELQWFECVKDIAPSHYTM----HRDTRKNMTA 102
           E               I+P   V       +  E V +I    +T      R  R+    
Sbjct: 275 EIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGI 334

Query: 103 GDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFVFAAAYTVPGGNNDK--------- 153
               N+ H + L  A +       S ++++ILIAT  FAA + VPG   D          
Sbjct: 335 AKRVNKMHTEGLNNAIN-------STTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYS 387

Query: 154 -GFPNFLDSPMFYLFTITDVASLSLSLS 180
            G       P F +F + D  +L +SL+
Sbjct: 388 LGEARAAPRPEFLIFVVFDSFALFISLA 415

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
224118134	696	predicted protein [Populus trichocarpa]	0.950	0.386	0.522	1e-73
224136568	409	predicted protein [Populus trichocarpa]	0.915	0.633	0.488	7e-69
224136572	650	predicted protein [Populus trichocarpa]	0.915	0.398	0.488	8e-69
224116010	710	predicted protein [Populus trichocarpa]	0.918	0.366	0.486	1e-63
224105645	702	predicted protein [Populus trichocarpa]	0.918	0.370	0.471	2e-63
224115936	802	predicted protein [Populus trichocarpa]	0.901	0.317	0.477	6e-62
224115956	700	predicted protein [Populus trichocarpa]	0.911	0.368	0.468	6e-61
224115972	353	predicted protein [Populus trichocarpa]	0.897	0.719	0.479	2e-60
224115980	595	predicted protein [Populus trichocarpa]	0.897	0.426	0.471	2e-59
224115968	276	predicted protein [Populus trichocarpa]	0.858	0.880	0.483	5e-59

>gi|224118134|ref|XP_002331567.1| predicted protein [Populus trichocarpa] gi|222873791|gb|EEF10922.1| predicted protein [Populus trichocarpa]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 142/272 (52%), Positives = 186/272 (68%), Gaps = 3/272 (1%)

Query: 5   VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           V++KGQ I+HVA++ R+ +IF  +V+KM + + +   RID+NGYT+LHHVA M +Y  G 
Sbjct: 403 VSRKGQNIMHVAIKNRQKEIFN-MVKKMEIPMTRLVRRIDKNGYTLLHHVAVMHYYSGGT 461

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKET 124
            PGP  Q QEEL WF+ V+ I P HY MHR   K+ TA + F +TH   LK+AQ+W+K T
Sbjct: 462 LPGPALQLQEELHWFDRVRKIIPPHYEMHRSRYKDKTAQEFFKKTHTKLLKEAQEWLKRT 521

Query: 125 SESCSILSILIATFVFAAAYTVPGGNN-DKGFPNFLDSPMFYLFTITDVASLSLSLSSAV 183
           SESCS +++LIAT  FAAAYTVPGG+N D G P  L  P+F +FT+ DV SL+ SL+S V
Sbjct: 522 SESCSTVAVLIATVAFAAAYTVPGGSNQDTGLPVLLHDPIFLVFTVMDVLSLASSLTSVV 581

Query: 184 MFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVAL- 242
           MFLSILTSP +  DF   LP+KL +GF  LF SV   M+TF+A+ILL+  L +RWT  L 
Sbjct: 582 MFLSILTSPFQLQDFRHSLPQKLILGFSFLFFSVAVMMLTFTATILLIVHLKKRWTTLLI 641

Query: 243 YAAAILPVILLALIALPLYGNFEKGLNHYLGL 274
           Y  A LPV + AL+ +PLY  F   L   + L
Sbjct: 642 YTVAFLPVSIFALLQVPLYLTFMNTLKSSVNL 673

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136568|ref|XP_002322362.1| predicted protein [Populus trichocarpa] gi|222869358|gb|EEF06489.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 131/268 (48%), Positives = 184/268 (68%), Gaps = 9/268 (3%)

Query: 5   VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           VN +GQ ILHVAV  RR +IF+ +V+K  + V + +  +D NG+T+LH VA +KHY  G 
Sbjct: 109 VNDEGQNILHVAVMHRRREIFR-LVKKKNIIVTRMSTSVDNNGFTLLHQVAHVKHYSGGA 167

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYTMHR-------DTRKNMTAGDLFNRTHEDQLKKA 117
           +PGP  Q QEE++WF+ V+ + P   +  R       D   N TA +LF   H+ QLK A
Sbjct: 168 KPGPALQLQEEIKWFKRVQRVVPPSLSEQRVQWVVPNDKNYNFTAFELFQEEHKGQLKLA 227

Query: 118 QDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSL 177
           QDWI++TS+SCS +++L+AT VFAAAYT+PGG++D+GFP FL +P F  FT+ DV +L+ 
Sbjct: 228 QDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSDDRGFPIFLHNPFFIAFTVLDVTALAS 287

Query: 178 SLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGER 237
           SL+S VMFLSILT+P E   F  ++PRKL  GF LLF SV+ +M+ F+ ++LL+ RL ++
Sbjct: 288 SLTSVVMFLSILTTPFECEKFYHNIPRKLIWGFTLLFFSVMTTMLAFTCTLLLIIRLKKQ 347

Query: 238 WTVALYA-AAILPVILLALIALPLYGNF 264
           WT  L + AA LPV + A++  PLY  F
Sbjct: 348 WTTGLMSMAAFLPVSVFAVMQFPLYVAF 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136572|ref|XP_002322363.1| predicted protein [Populus trichocarpa] gi|222869359|gb|EEF06490.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (680), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 131/268 (48%), Positives = 184/268 (68%), Gaps = 9/268 (3%)

Query: 5   VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           VN +GQ ILHVAV  RR +IF+ +V+K  + V + +  +D NG+T+LH VA +KHY  G 
Sbjct: 350 VNDEGQNILHVAVMHRRREIFR-LVKKKNIIVTRMSTSVDNNGFTLLHQVAHVKHYSGGA 408

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYTMHR-------DTRKNMTAGDLFNRTHEDQLKKA 117
           +PGP  Q QEE++WF+ V+ + P   +  R       D   N TA +LF   H+ QLK A
Sbjct: 409 KPGPALQLQEEIKWFKRVQRVVPPSLSEQRVQWVVPNDKNYNFTAFELFQEEHKGQLKLA 468

Query: 118 QDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSL 177
           QDWI++TS+SCS +++L+AT VFAAAYT+PGG++D+GFP FL +P F  FT+ DV +L+ 
Sbjct: 469 QDWIEKTSQSCSAVAVLLATVVFAAAYTIPGGSDDRGFPIFLHNPFFIAFTVLDVTALAS 528

Query: 178 SLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGER 237
           SL+S VMFLSILT+P E   F  ++PRKL  GF LLF SV+ +M+ F+ ++LL+ RL ++
Sbjct: 529 SLTSVVMFLSILTTPFECEKFYHNIPRKLIWGFTLLFFSVMTTMLAFTCTLLLIIRLKKQ 588

Query: 238 WTVALYA-AAILPVILLALIALPLYGNF 264
           WT  L + AA LPV + A++  PLY  F
Sbjct: 589 WTTGLMSMAAFLPVSVFAVMQFPLYVAF 616

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116010|ref|XP_002317184.1| predicted protein [Populus trichocarpa] gi|222860249|gb|EEE97796.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/265 (48%), Positives = 188/265 (70%), Gaps = 5/265 (1%)

Query: 2   LSTVNQKGQTILHVAVRRRRHDIFQFI-VEKMPLYVPKWAARIDENGYTILHHVADMKHY 60
           +  +N KGQ+IL VAV  R+  IF  +  +++PL   +    ID+ G T+LHHVADM+HY
Sbjct: 414 VEKLNDKGQSILDVAVIHRQKRIFNLVKQQRIPL--ARLQRVIDKKGNTLLHHVADMEHY 471

Query: 61  EYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDW 120
             G +PGP  + QEELQWFE V+++ PSHY   R+  +  TA +LF  +H+DQL+ AQ W
Sbjct: 472 RGGTKPGPALKLQEELQWFEQVREVIPSHYVTLRND-EGKTAEELFKESHKDQLENAQKW 530

Query: 121 IKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLS 180
           IKET++SCS ++ L+AT VFAAAYTVPGG+++ G PNF++SP F +FT++DV SL+ SL+
Sbjct: 531 IKETTQSCSTVAALVATVVFAAAYTVPGGSDEDGTPNFINSPYFLVFTVSDVLSLASSLT 590

Query: 181 SAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTV 240
           S V+FLS+LTSP E  +F   LPRKL +GF  LF +V+ +M++F A+IL++ +  ++ T 
Sbjct: 591 SLVVFLSLLTSPFELQEFHISLPRKLLVGFTFLFFAVITTMLSFGATILILIQSEKKLTT 650

Query: 241 ALYA-AAILPVILLALIALPLYGNF 264
            L + AA LPV++ A++   LY +F
Sbjct: 651 LLLSIAAFLPVLVFAIMQFHLYVSF 675

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105645|ref|XP_002333787.1| predicted protein [Populus trichocarpa] gi|222838519|gb|EEE76884.1| predicted protein [Populus trichocarpa]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 125/265 (47%), Positives = 180/265 (67%), Gaps = 5/265 (1%)

Query: 2   LSTVNQKGQTILHVAVRRRRHDIFQFI-VEKMPLYVPKWAARIDENGYTILHHVADMKHY 60
           +  +N KGQ+IL VAV  R+ +IF  +  +++PL   +    ID+ G T+LHHVAD   Y
Sbjct: 402 VEKLNDKGQSILDVAVIHRQKEIFNLVKQQRIPL--ARLHRNIDKKGNTLLHHVADTSQY 459

Query: 61  EYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDW 120
             G +PGP +Q Q+ELQWFE V+++ PSHY   R+  +  TA +LF  +HEDQL  A+ W
Sbjct: 460 RGGTKPGPAHQLQDELQWFEQVREVVPSHYVTLRND-EGKTAEELFIESHEDQLNSARTW 518

Query: 121 IKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLS 180
           IKET++SCS ++ L+ATFVFAAAYTVPGG+++ G PN + SP F  F + DV SL+ SL+
Sbjct: 519 IKETTQSCSTVAALVATFVFAAAYTVPGGSDENGKPNLIKSPYFLSFAVADVVSLAFSLT 578

Query: 181 SAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTV 240
           S  +FLS+LTS  E  DF   LPRKL +GF  LFLS++ SM++F ++IL++ + G + T 
Sbjct: 579 SLTVFLSLLTSRFELRDFHIALPRKLAVGFTFLFLSMMTSMLSFGSTILILIQSGTKLTT 638

Query: 241 ALYA-AAILPVILLALIALPLYGNF 264
            L + A+ LPV++  ++   LY +F
Sbjct: 639 LLLSVASFLPVLVFTIMQFRLYVSF 663

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115936|ref|XP_002317165.1| predicted protein [Populus trichocarpa] gi|222860230|gb|EEE97777.1| predicted protein [Populus trichocarpa]

 Score =  243 bits (620), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 125/262 (47%), Positives = 180/262 (68%), Gaps = 7/262 (2%)

Query: 6   NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR 65
           ++  ++IL VAV  R+  IF  + EK  + + +    +D++G T+LHHVADMK      +
Sbjct: 506 DEMNRSILDVAVMYRQKKIFDIVKEK-EIQMARMRRVVDKSGNTLLHHVADMKKNSGVTK 564

Query: 66  PGPVYQFQEELQWFECVKDIAPSHYT--MHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKE 123
           PGP  Q QEEL+WFE VK+  P HY   +++D    MTA + F  +HE QLK+AQ WIKE
Sbjct: 565 PGPALQLQEELKWFERVKEEIPPHYVPLLNKD---GMTARECFENSHEMQLKQAQKWIKE 621

Query: 124 TSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAV 183
           T++SCS ++ L+AT VFAAAYTVPGG+++KG PNF++SP F +FT++DV SL+ SL+S V
Sbjct: 622 TAQSCSTVAALVATVVFAAAYTVPGGSDEKGKPNFINSPYFLIFTVSDVVSLASSLTSLV 681

Query: 184 MFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALY 243
           +FLS+LTSP E  +F   LPRKL +GF  LF SVL +M++F A+IL++ +   R T  L 
Sbjct: 682 VFLSLLTSPFELQEFHISLPRKLVVGFSFLFFSVLTTMLSFGATILILIQTERRLTTLLL 741

Query: 244 A-AAILPVILLALIALPLYGNF 264
           + A+ LPV++  ++   LY +F
Sbjct: 742 SIASFLPVLIFGILQFRLYVSF 763

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115956|ref|XP_002317170.1| predicted protein [Populus trichocarpa] gi|222860235|gb|EEE97782.1| predicted protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 181/267 (67%), Gaps = 9/267 (3%)

Query: 2   LSTVNQKGQTILHVAVRRRRHDIFQFI-VEKMPLYVPKWAARIDENGYTILHHVADMKHY 60
           +  +N++GQ+IL +AV  R+  IF F+  +K+PL   +    +D  G T+LHHVA+ +  
Sbjct: 406 IEKLNKEGQSILDMAVMYRQKKIFDFLKQQKIPL--ARMRRVVDSKGNTLLHHVAEKRKN 463

Query: 61  EYGIRPGPVYQFQEELQWFECVKDIAPSHYT--MHRDTRKNMTAGDLFNRTHEDQLKKAQ 118
               +PGP  Q QEELQWFE V+ + PS+Y   ++ D R   TA + F   H +QLKKAQ
Sbjct: 464 SGVTKPGPALQLQEELQWFEQVRKVIPSNYVPLLNNDGR---TARECFEIEHTEQLKKAQ 520

Query: 119 DWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLS 178
            WIKETS+SCS ++ L+AT VFAAAYTVPGG+++ G PNF++SP F +FT++DV SL+ S
Sbjct: 521 KWIKETSQSCSTIAALVATVVFAAAYTVPGGSDENGKPNFINSPYFLIFTVSDVVSLASS 580

Query: 179 LSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERW 238
           L+S V+FLS+LTSP E  DF   LPRKL +GF  LF SV+ +M++F A+IL++ +   + 
Sbjct: 581 LTSLVVFLSLLTSPIELQDFHISLPRKLIVGFTFLFFSVITTMLSFGATILILIQSERKL 640

Query: 239 TVALYA-AAILPVILLALIALPLYGNF 264
           T  L + A+ LPV++  ++   LY +F
Sbjct: 641 TTLLLSIASFLPVLVFGIMQFRLYVSF 667

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115972|ref|XP_002317174.1| predicted protein [Populus trichocarpa] gi|222860239|gb|EEE97786.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (608), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/263 (47%), Positives = 181/263 (68%), Gaps = 9/263 (3%)

Query: 6   NQKGQTILHVAVRRRRHDIFQFIV-EKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           ++  ++IL VAV  R+  IF  +  +K+PL   +    +D +G T+LHHVADMK      
Sbjct: 57  DEMNRSILDVAVMYRQEKIFDIVKGKKIPL--DRMRRVVDISGNTLLHHVADMKKNSGVT 114

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYT--MHRDTRKNMTAGDLFNRTHEDQLKKAQDWIK 122
           +PGP  Q QEEL+WFE V+D+ PS+Y   +++D    MTA + F   HE QLKKAQ WIK
Sbjct: 115 KPGPALQLQEELKWFERVQDVIPSYYVPLLNKD---GMTAREYFEIAHEKQLKKAQTWIK 171

Query: 123 ETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSA 182
           ETS+SCS ++ L+AT VFAAAYTVPGG+++KG P F++SP F +FT++DV SL+ SL+S 
Sbjct: 172 ETSQSCSTVAALVATVVFAAAYTVPGGSDEKGKPIFINSPYFLIFTVSDVVSLASSLTSL 231

Query: 183 VMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVAL 242
           V+FLS+LTSP E  +F   LPRKL +GF  LF SVL +M++F+A+IL++ +   + T  L
Sbjct: 232 VVFLSLLTSPFELQEFHISLPRKLVVGFSFLFFSVLTTMLSFAATILILIQTERKLTTLL 291

Query: 243 YA-AAILPVILLALIALPLYGNF 264
            + A+ LPV++  ++   LY +F
Sbjct: 292 LSIASFLPVLIFGILQFRLYVSF 314

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115980|ref|XP_002317176.1| predicted protein [Populus trichocarpa] gi|222860241|gb|EEE97788.1| predicted protein [Populus trichocarpa]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 124/263 (47%), Positives = 177/263 (67%), Gaps = 9/263 (3%)

Query: 6   NQKGQTILHVAVRRRRHDIFQFIVE-KMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           ++  ++IL VAV  R+  IF  + E K+P+   +    +D  G T+LHHVADMK      
Sbjct: 311 DEMNRSILDVAVMYRQKKIFDIVKEQKIPM--ARMRRFVDNRGNTLLHHVADMKKNSEVT 368

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYT--MHRDTRKNMTAGDLFNRTHEDQLKKAQDWIK 122
           +PGP  Q QEEL+WFE V+++ PS+Y   +++D    MTA + F   HE QL+KAQ WIK
Sbjct: 369 KPGPALQLQEELKWFERVQEVIPSYYVPLLNKD---GMTARECFEIAHEKQLEKAQIWIK 425

Query: 123 ETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSA 182
           ETS+SCS ++ L+AT VFAAAYTVPGG+++ G P F++SP F +FT++DV SL+ SL+S 
Sbjct: 426 ETSQSCSTVAALVATVVFAAAYTVPGGSDENGKPIFINSPYFLIFTVSDVVSLASSLTSL 485

Query: 183 VMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVAL 242
           V+FLS+LTSP E  +F   LPRKL +GF  LF SVL +M++F A+IL++ +   R T  L
Sbjct: 486 VVFLSLLTSPFELQEFHISLPRKLIVGFSFLFFSVLTTMLSFGATILILIQTERRLTTLL 545

Query: 243 YA-AAILPVILLALIALPLYGNF 264
            + A+ LPV +  ++   LY +F
Sbjct: 546 LSIASFLPVFIFGILQFRLYVSF 568

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115968|ref|XP_002317173.1| predicted protein [Populus trichocarpa] gi|222860238|gb|EEE97785.1| predicted protein [Populus trichocarpa]

 Score =  233 bits (595), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/246 (48%), Positives = 174/246 (70%), Gaps = 3/246 (1%)

Query: 20  RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWF 79
           R+  IF  +V+++ + + +    IDE G T+LHHVADM +Y  G +PGP  + QEELQWF
Sbjct: 3   RQKKIFN-LVKQLKVPLARLHRVIDEKGNTLLHHVADMDNYRGGTKPGPALELQEELQWF 61

Query: 80  ECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSESCSILSILIATFV 139
           E V+ + PSHY   R+ R+  TA +LF  +H+DQL  AQ WIKET++SCS ++ L+AT V
Sbjct: 62  EQVQKVIPSHYVTLRN-REGKTAKELFEESHKDQLTNAQKWIKETTQSCSTVAALVATVV 120

Query: 140 FAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVASLSLSLSSAVMFLSILTSPRESSDFL 199
           FAAAYTVPGG++  G PNF++SP F +FT++DV SL+ SL+S V+FLS+LTSP +  +F 
Sbjct: 121 FAAAYTVPGGSDKNGKPNFINSPYFLVFTVSDVLSLASSLTSLVVFLSLLTSPFQQQEFH 180

Query: 200 DHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERWTVALYA-AAILPVILLALIAL 258
             LPRKL +GF  LF +V+ +M++F A+IL++ +  ++ T  L + AA LPV++ A++  
Sbjct: 181 ISLPRKLLVGFTFLFFAVITTMLSFGATILILIQSEKKLTTLLLSMAAFLPVLVFAIMQF 240

Query: 259 PLYGNF 264
            LY +F
Sbjct: 241 RLYVSF 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	283
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.840	0.685	0.329	8.5e-33
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.805	0.397	0.352	2.9e-32
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.819	0.346	0.311	6.9e-25
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.763	0.345	0.299	1.6e-24
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.770	0.361	0.297	2.7e-22
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.749	0.349	0.241	1.1e-06
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.759	0.364	0.214	0.00022

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 81/246 (32%), Positives = 133/246 (54%)

Query:     1 MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH- 59
             ++ TV+ K Q++ H+A   R   IF  I E   +       +  E+   +LH VA +   
Sbjct:    57 LIWTVDHKNQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPP 116

Query:    60 YEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQD 119
                 +  G   Q Q E+ W++ VK+I P  Y   ++ +K   A DLF + H++  K+ + 
Sbjct:   117 NRLQVVSGAALQMQREILWYKAVKEIVPRVYIKTKN-KKEEVAHDLFTKEHDNLRKEGEK 175

Query:   120 WIKETSESCSILSILIATFVFAAAYTVPGGNNDKG------FPNFLDSPMFYLFTITDVA 173
             W+KET+ +C ++S LIAT VFAAA+T+PGGN+  G      FP F     F +F I+D  
Sbjct:   176 WMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSV 235

Query:   174 XXXXXXXXAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVAR 233
                      ++FLSILTS    + F   LP KL +G + LF+S+++ ++ F+A+++L+  
Sbjct:   236 ALLSSVTSIMIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRD 295

Query:   234 LGERWT 239
                +W+
Sbjct:   296 QEPKWS 301

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 85/241 (35%), Positives = 130/241 (53%)

Query:     1 MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVA---DM 57
             +L  V+   +T+ HVA   R  +IF  I E   +     + +  ++  T+LH VA    M
Sbjct:   281 LLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIASYKEKQSKDTLLHLVARLPPM 340

Query:    58 KHYEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKA 117
                + G   G     Q+EL WF+ VK+I P  Y   ++T+  + A D+F   HE+  K+ 
Sbjct:   341 NRQQVG--SGAALHMQKELLWFKAVKEIVPRSYIETKNTKGEL-AHDIFTEQHENLRKEG 397

Query:   118 QDWIKETSESCSILSILIATFVFAAAYTVPGGNNDKG-------FPNFLDSPMFYLFTIT 170
             + W+KET+ +C + + LIAT VFAAA T+PGGN+D G       FPNF    +F +FT++
Sbjct:   398 ERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLGFPNFRKRLLFDIFTLS 457

Query:   171 DVAXXXXXXXXAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILL 230
             D           V+FLSI TS     DF   LP KL  G   LF+S+++ ++ F+ S++L
Sbjct:   458 DSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALFISIISMILAFTFSMIL 517

Query:   231 V 231
             +
Sbjct:   518 I 518

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 6.9e-25, P = 6.9e-25
 Identities = 75/241 (31%), Positives = 120/241 (49%)

Query:     3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDEN--GYTILHHVA-DMKH 59
             ST      T+  +AV  R+  +F  +     L   K+    D++  G  +LH        
Sbjct:   388 STRTSSSSTLFLLAVEFRQEKVFSLLYG---LDDRKYLLLADKDCDGNGVLHLAGFPSPP 444

Query:    60 YEYGIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQD 119
              +     G   Q Q ELQWF+ V+ IAP      R   +  T  ++F + H+   ++A+ 
Sbjct:   445 SKLSSVVGAPLQLQRELQWFKEVERIAPE-IEKERVNTEEQTPIEIFTKEHQGLRQEAEK 503

Query:   120 WIKETSESCSILSILIATFVFAAAYTVPGGNND--KGFPNFLDSPMFYLFTITDVAXXXX 177
             W+K+T+ SCS+++ LI T  FAA +TVPGG +D  KG P  L    F +F ++D+     
Sbjct:   504 WMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFA 563

Query:   178 XXXXAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGER 237
                  ++FL ILT+     DFL  LP K+  G  +LF+S+ A +I FS+++  +     +
Sbjct:   564 SCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGK 623

Query:   238 W 238
             W
Sbjct:   624 W 624

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 68/227 (29%), Positives = 119/227 (52%)

Query:    11 TILHVAVRRRRHDIFQFIV---EKMPLYVPKWAARIDENGYTILHHVA-DMKHYEYGIRP 66
             T+ + AV+ R+  +F  +    ++  L++    A  D +G ++LH       +Y+     
Sbjct:   354 TLFNTAVQVRQEKVFSLLYGLGDRKYLFL----ADKDSDGNSVLHLAGYPPPNYKLATVV 409

Query:    67 GPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSE 126
                 Q Q ELQWF+ ++ I P+     R   +N+T  ++F + HE    +A+ W+K+T+ 
Sbjct:   410 SATLQMQRELQWFKEMERIVPA-IENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAM 468

Query:   127 SCSILSILIATFVFAAAYTVPGGNNDK--GFPNFLDSPMFYLFTITDVAXXXXXXXXAVM 184
             SCS+++ LI T  FAA +TVPGG +D   G P      +F +F ++D+          ++
Sbjct:   469 SCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLI 528

Query:   185 FLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLV 231
             FL ILT+     DFL  LP  +  G   LF+S+ A ++ FS+++  +
Sbjct:   529 FLGILTARYAFDDFLFSLPANMIAGLSTLFVSIAAMLVAFSSALFTI 575

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 2.7e-22, P = 2.7e-22
 Identities = 66/222 (29%), Positives = 108/222 (48%)

Query:     9 GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR-PG 67
             G+ +  +AV  ++  IF  I       V    +  D+    ILH    +   +   +  G
Sbjct:   329 GRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRS-YDKGNNNILHIAGRLSTPDQLSKISG 387

Query:    68 PVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDWIKETSES 127
                + Q E QWF+ V+ +      + ++ + N T   +F   HE   K+ ++W+K T+ +
Sbjct:   388 AALKMQRESQWFKEVESLVSEREVVQKN-KDNKTPRQIFEHYHEHLRKEGEEWMKYTATA 446

Query:   128 CSILSILIATFVFAAAYTVPGG-NNDKGFPNFLDSPMFYLFTITDVAXXXXXXXXAVMFL 186
             CS ++ LIAT  F A +TVPGG +   G P  L+   F  F  TD           ++FL
Sbjct:   447 CSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISVLIFL 506

Query:   187 SILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASI 228
             SILTS     DF+  LPRK+ +G  +LF+S+ + ++ F  S+
Sbjct:   507 SILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSL 548

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 57/236 (24%), Positives = 112/236 (47%)

Query:     9 GQTILHVAVRRRRHDIFQFIVEKMPLYVP------KWAARIDENGYTILHHVADMKHY-- 60
             G T+LH+A R++R +I   +++     V       K A  I E G T     A++K    
Sbjct:   314 GNTVLHIATRKKRAEIVNELLQLPDTNVNALTRDHKTAYDIAE-GLTHSEETAEIKEILS 372

Query:    61 EYG-IRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKA-Q 118
               G ++   + Q ++EL+  + V +I    +T    TRK     D   +    +L+K  +
Sbjct:   373 RCGALKANELNQPRDELR--KTVTEIKKDVHTQLEQTRKTNKNVDGIAK----ELRKLHR 426

Query:   119 DWIKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVAXXXXX 178
               I   + S +++++L AT  FAA +TVPGG++D G    + +  F +F I +       
Sbjct:   427 AGINNATNSVTVVAVLFATVAFAAIFTVPGGDDDHGVAVMVHATSFKIFFIFNAIALFTS 486

Query:   179 XXXAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITF-SASILLVAR 233
                 V+ ++++    ++        R +++   L++L+ + + + F S+S ++V R
Sbjct:   487 LAVVVVQITLVRGETKTER------RVVEVINKLMWLASVCTTVAFISSSYIVVGR 536

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 0.00022, Sum P(2) = 0.00022
 Identities = 51/238 (21%), Positives = 104/238 (43%)

Query:    11 TILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY-------- 62
             T LHVA R++R +I + ++  +P        R  +    I   +   +   Y        
Sbjct:   302 TALHVATRKKRAEIVELLLS-LPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARS 360

Query:    63 -GIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKA-QDW 120
               +R   + Q ++EL+    V  I    +     T++  T  ++ N + E  L+K  ++ 
Sbjct:   361 GALRANELNQPRDELR--STVTQIKNDVHIQLEQTKR--TNKNVHNISKE--LRKLHREG 414

Query:   121 IKETSESCSILSILIATFVFAAAYTVPGGNNDKGFPNFLDSPMFYLFTITDVAXXXXXXX 180
             I   + S +++++L AT  FAA +TVPGG+N+ G    +    F +F I +         
Sbjct:   415 INNATNSVTVVAVLFATVAFAAIFTVPGGDNNDGSAVVVGRASFKIFFIFNALALFTSLA 474

Query:   181 XAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLVARLGERW 238
               V+ ++++    ++        R +++   L++L+ + + + F AS  +V      W
Sbjct:   475 VVVVQITLVRGETKAEK------RVVEVINKLMWLASMCTSVAFLASSYIVVGRKNEW 526

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01660047 hypothetical protein (696 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	283
pfam13962	114	pfam13962, PGG, Domain of unknown function	4e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-04

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 88.3 bits (220), Expect = 4e-22
 Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 118 QDWIKETSESCSILSILIATFVFAAAYTVPGGNND------KGFPNFLDSP-MFYLFTIT 170
            +W+++T  S  +++ LIAT  FAA +T PGG          G P     P  F  F ++
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 171 DVASLSLSLSSAVMFLSILTSPRESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILL 230
           +  +   SL + ++ L I+ S             +L     LL+LS+L+ M+ F+A    
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSRRL-------PRLLALLTLLWLSLLSLMVAFAAGSYR 113

Query: 231 V 231
           V
Sbjct: 114 V 114

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 5  VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE 61
           ++ G+T LH+A      ++ + ++E             D +G T LH  A   H E
Sbjct: 3  RDEDGRTPLHLAASNGHLEVVKLLLENGAD-----VNAKDNDGRTPLHLAAKNGHLE 54

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 5/57 (8%)

Query: 5  VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE 61
           +  G+T LH+A +    +I + ++EK            D++G T LH  A   + +
Sbjct: 36 KDNDGRTPLHLAAKNGHLEIVKLLLEKGAD-----VNARDKDGNTPLHLAARNGNLD 87

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 5   VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE 61
            ++ G T LH+A R    D+ + +++             D++G T LH  A   H E
Sbjct: 69  RDKDGNTPLHLAARNGNLDVVKLLLKHG-----ADVNARDKDGRTPLHLAAKNGHLE 120

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	283
PF13962	113	PGG: Domain of unknown function	99.95
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.34
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.3
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.29
PHA02741	169	hypothetical protein; Provisional	99.23
PHA02743	166	Viral ankyrin protein; Provisional	99.13
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.08
KOG0510	929	consensus Ankyrin repeat protein [General function	99.08
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.06
PHA02736	154	Viral ankyrin protein; Provisional	99.04
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.02
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.96
PHA02874	434	ankyrin repeat protein; Provisional	98.94
PHA02859	209	ankyrin repeat protein; Provisional	98.92
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.91
PHA02791	284	ankyrin-like protein; Provisional	98.9
PHA02946	446	ankyin-like protein; Provisional	98.9
KOG0510	929	consensus Ankyrin repeat protein [General function	98.89
PHA02874	434	ankyrin repeat protein; Provisional	98.89
PHA02946	446	ankyin-like protein; Provisional	98.88
PHA02791	284	ankyrin-like protein; Provisional	98.87
PHA02878	477	ankyrin repeat protein; Provisional	98.86
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.84
PHA02736	154	Viral ankyrin protein; Provisional	98.83
PHA02878	477	ankyrin repeat protein; Provisional	98.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.81
KOG0508	615	consensus Ankyrin repeat protein [General function	98.8
PHA02884	300	ankyrin repeat protein; Provisional	98.8
PHA02795	437	ankyrin-like protein; Provisional	98.78
PHA02989	494	ankyrin repeat protein; Provisional	98.78
PHA02743	166	Viral ankyrin protein; Provisional	98.76
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.76
PHA02875	413	ankyrin repeat protein; Provisional	98.75
PHA03095	471	ankyrin-like protein; Provisional	98.73
PHA02741	169	hypothetical protein; Provisional	98.72
PHA02798	489	ankyrin-like protein; Provisional	98.72
PHA02730	672	ankyrin-like protein; Provisional	98.72
PHA03100	480	ankyrin repeat protein; Provisional	98.71
PHA03095	471	ankyrin-like protein; Provisional	98.7
PHA02859	209	ankyrin repeat protein; Provisional	98.7
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.69
PHA02875	413	ankyrin repeat protein; Provisional	98.69
PHA02917	661	ankyrin-like protein; Provisional	98.67
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.67
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.61
PHA03100	480	ankyrin repeat protein; Provisional	98.58
PHA02876	682	ankyrin repeat protein; Provisional	98.57
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.55
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	98.55
PHA02798	489	ankyrin-like protein; Provisional	98.55
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.54
KOG0514	452	consensus Ankyrin repeat protein [General function	98.53
PHA02876	682	ankyrin repeat protein; Provisional	98.53
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.51
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.49
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.49
PF13606	30	Ank_3: Ankyrin repeat	98.46
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.41
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.4
PHA02795	437	ankyrin-like protein; Provisional	98.4
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.39
PHA02884	300	ankyrin repeat protein; Provisional	98.38
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.35
KOG0514	452	consensus Ankyrin repeat protein [General function	98.34
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.34
PHA02989	494	ankyrin repeat protein; Provisional	98.32
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.3
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.29
PHA02792	631	ankyrin-like protein; Provisional	98.26
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.25
PHA02792	631	ankyrin-like protein; Provisional	98.23
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.23
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.17
PHA02917	661	ankyrin-like protein; Provisional	98.13
KOG0522	560	consensus Ankyrin repeat protein [General function	98.12
PHA02730	672	ankyrin-like protein; Provisional	98.09
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	97.95
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.95
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.93
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.93
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.92
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	97.89
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	97.81
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	97.75
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	97.74
KOG0508	615	consensus Ankyrin repeat protein [General function	97.74
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.64
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.61
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.41
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.38
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.1
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.08
PF13606	30	Ank_3: Ankyrin repeat	96.76
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	96.71
KOG2384	223	consensus Major histocompatibility complex protein	96.54
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	96.53
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.42
KOG0522	560	consensus Ankyrin repeat protein [General function	96.33
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	95.89
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	95.73
KOG0520	975	consensus Uncharacterized conserved protein, conta	95.34
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	95.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	95.03
KOG0783	1267	consensus Uncharacterized conserved protein, conta	94.86
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	94.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	94.81
KOG0520	975	consensus Uncharacterized conserved protein, conta	94.78
KOG0521	785	consensus Putative GTPase activating proteins (GAP	93.88
KOG2505	591	consensus Ankyrin repeat protein [General function	93.51
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	93.06
KOG0511	516	consensus Ankyrin repeat protein [General function	91.35
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	91.06
KOG0511	516	consensus Ankyrin repeat protein [General function	90.37
KOG4591	280	consensus Uncharacterized conserved protein, conta	89.58
KOG2384	223	consensus Major histocompatibility complex protein	86.27

>PF13962 PGG: Domain of unknown function

Probab=99.95  E-value=1.4e-27  Score=185.55  Aligned_cols=108  Identities=34%  Similarity=0.606  Sum_probs=95.1

Q ss_pred             HhHHhhhccchhHHHHHHHHHHhhhhccCCCCCCCC----CccccCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 041061          118 QDWIKETSESCSILSILIATFVFAAAYTVPGGNNDK----GFPNFLDSP-MFYLFTITDVASLSLSLSSAVMFLSILTSP  192 (283)
Q Consensus       118 ~~~lk~t~~~~~vva~LIATvtFaA~~t~PGG~~~~----G~~~l~~~~-~f~~F~~~nt~a~~~S~~~~~~~~~~~~~~  192 (283)
                      +||+++++|++++||+|||||||||++|||||++||    |+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            478999999999999999999999999999999774    999999888 999999999999999999998876322   


Q ss_pred             CccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041061          193 RESSDFLDHLPRKLKIGFMLLFLSVLASMITFSASILLV  231 (283)
Q Consensus       193 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~~  231 (283)
                         +++.+..++.+.++..++++++.+|++||++|+++|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               334444556788899999999999999999999875

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=2e-13  Score=92.51  Aligned_cols=48  Identities=23%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHV   54 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlA   54 (283)
                      ++.+|..|+||||+||.+|+.+++++|++.     +..++.+|++|+||||+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~-----g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQN-----GADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHC-----T--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHC-----cCCCCCCcCCCCCHHHhC
Confidence            567899999999999999999999999954     467999999999999997

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=3.5e-13  Score=110.08  Aligned_cols=80  Identities=21%  Similarity=0.201  Sum_probs=59.4

Q ss_pred             cccC-CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            4 TVNQ-KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         4 ~~D~-~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      .+|+ +||||||+||..|+.+|+++|++.    .+..+|.+|..|+||||.|+..|+.+                   .|
T Consensus        32 ~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq----~nv~~ddkDdaGWtPlhia~s~g~~e-------------------vV   88 (226)
T KOG4412|consen   32 ARDDQDGRTPLHWACSFGHVEIVYFLLSQ----PNVKPDDKDDAGWTPLHIAASNGNDE-------------------VV   88 (226)
T ss_pred             ccccccCCceeeeeeecCchhHHHHHHhc----CCCCCCCccccCCchhhhhhhcCcHH-------------------HH
Confidence            3444 999999999999999999999874    24568999999999999999988733                   33


Q ss_pred             hccccc--ccccccccccCCccccccc
Q 041061           83 KDIAPS--HYTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        83 ~~~~~~--~~~~~~n~~~G~T~~dl~~  107 (283)
                      +.++.+  ...+..|+ .|+|+++++.
T Consensus        89 k~Ll~r~~advna~tn-~G~T~LHyAa  114 (226)
T KOG4412|consen   89 KELLNRSGADVNATTN-GGQTCLHYAA  114 (226)
T ss_pred             HHHhcCCCCCcceecC-CCcceehhhh
Confidence            433322  23445555 6777766654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.30  E-value=2.5e-12  Score=86.25  Aligned_cols=48  Identities=31%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            9 GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         9 G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      |+|+||+|++.|+.+++++|++++     ..+|.+|.+|+||||+|++.|+.+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-----~din~~d~~g~t~lh~A~~~g~~~   48 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-----ADINAQDEDGRTPLHYAAKNGNID   48 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-----SGTT-B-TTS--HHHHHHHTT-HH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHccCHH
Confidence            899999999999999999999873     459999999999999999999854

...

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=2e-12  Score=105.64  Aligned_cols=100  Identities=13%  Similarity=0.102  Sum_probs=75.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc--------------CCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI--------------RPG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~--------------~~g   67 (283)
                      +|++|+.||||||+|+..|+.++|+.|+.+.    +..+|.+++.|.|+||+|+..|..+..-              ...
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~----~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~q  140 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRS----GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQ  140 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCC----CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccC
Confidence            5788999999999999999999999998763    4679999999999999999777654320              133


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLF  106 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~  106 (283)
                      ++++-+...+..+.++.++... ..+..++ .|.||+..+
T Consensus       141 tplHRAAavGklkvie~Li~~~a~~n~qDk-~G~TpL~~a  179 (226)
T KOG4412|consen  141 TPLHRAAAVGKLKVIEYLISQGAPLNTQDK-YGFTPLHHA  179 (226)
T ss_pred             chhHHHHhccchhhHHHHHhcCCCCCcccc-cCccHHHHH
Confidence            5666666666666666555433 3455666 899998765

>PHA02741 hypothetical protein; Provisional

Probab=99.23  E-value=2.2e-11  Score=101.08  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=61.9

Q ss_pred             cccccCCCChHHHHHHHhCC----HHHHHHHHHhCCCCcccccccccC-CCCcHHHHHHhcCCcccccCCCChhhhHHHh
Q 041061            2 LSTVNQKGQTILHVAVRRRR----HDIFQFIVEKMPLYVPKWAARIDE-NGYTILHHVADMKHYEYGIRPGPVYQFQEEL   76 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~----~~iv~~Ll~~~~~~~~~~vn~~D~-~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l   76 (283)
                      ++.+|..|+||||+|+.+|+    .+++++|++.     +..+|.+|. +|+||||+|+..++.+               
T Consensus        53 in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~-----gadin~~~~~~g~TpLh~A~~~~~~~---------------  112 (169)
T PHA02741         53 LNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIEL-----GADINAQEMLEGDTALHLAAHRRDHD---------------  112 (169)
T ss_pred             hhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCCCCcCCCCCHHHHHHHcCCHH---------------
Confidence            46678899999999999998    5788888875     355888885 8999999999888732               


Q ss_pred             hhhhhhhcccc--cccccccccccCCcccccccchh
Q 041061           77 QWFECVKDIAP--SHYTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        77 ~~~~~v~~~~~--~~~~~~~n~~~G~T~~dl~~~~~  110 (283)
                          .++.++.  ....+.+|. +|+||.+++....
T Consensus       113 ----iv~~Ll~~~g~~~~~~n~-~g~tpL~~A~~~~  143 (169)
T PHA02741        113 ----LAEWLCCQPGIDLHFCNA-DNKSPFELAIDNE  143 (169)
T ss_pred             ----HHHHHHhCCCCCCCcCCC-CCCCHHHHHHHCC
Confidence                2333331  234456677 9999998876543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.13  E-value=5.5e-11  Score=98.44  Aligned_cols=81  Identities=17%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHH---HHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccCCCChhhhHHHhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDI---FQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIRPGPVYQFQEELQW   78 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~i---v~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~   78 (283)
                      +.+|++|+||||+|+.+|+.++   +++|++.     +..+|.+| .+|+||||+|+..++.+                 
T Consensus        51 ~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~-----Gadin~~d~~~g~TpLh~A~~~g~~~-----------------  108 (166)
T PHA02743         51 HRYDHHGRQCTHMVAWYDRANAVMKIELLVNM-----GADINARELGTGNTLLHIAASTKNYE-----------------  108 (166)
T ss_pred             hccCCCCCcHHHHHHHhCccCHHHHHHHHHHc-----CCCCCCCCCCCCCcHHHHHHHhCCHH-----------------
Confidence            4567778888888888777554   6677664     34577777 47888888888766532                 


Q ss_pred             hhhhhcccc--cccccccccccCCcccccccc
Q 041061           79 FECVKDIAP--SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        79 ~~~v~~~~~--~~~~~~~n~~~G~T~~dl~~~  108 (283)
                        .++.++.  ....+.+|. +|.||..++..
T Consensus       109 --iv~~Ll~~~gad~~~~d~-~g~tpL~~A~~  137 (166)
T PHA02743        109 --LAEWLCRQLGVNLGAINY-QHETAYHIAYK  137 (166)
T ss_pred             --HHHHHHhccCCCccCcCC-CCCCHHHHHHH
Confidence              2232321  223456666 89999887654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.08  E-value=9e-11  Score=119.77  Aligned_cols=102  Identities=19%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC------------CCCh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR------------PGPV   69 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~------------~g~a   69 (283)
                      +|..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..            .+++
T Consensus       551 ~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-----adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~  625 (823)
T PLN03192        551 PDIGDSKGRTPLHIAASKGYEDCVLVLLKHA-----CNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDL  625 (823)
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHHhcC-----CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchH
Confidence            4778999999999999999999999999863     5689999999999999999998765321            2345


Q ss_pred             hhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           70 YQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        70 l~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +..+...+..+.++.++..+ ..+.+|+ +|.||.+++.+.
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Gadin~~d~-~G~TpLh~A~~~  665 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAE  665 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHHC
Confidence            65655555555566555432 3456677 899998886543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.08  E-value=6.9e-11  Score=115.02  Aligned_cols=56  Identities=16%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            1 MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         1 ~ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      |++++|++|.||||+|+++|+.+.++.|+..     +..+|.+++|+.||||.||..|...
T Consensus       265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~-----Ga~I~~kn~d~~spLH~AA~yg~~n  320 (929)
T KOG0510|consen  265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGF-----GASINSKNKDEESPLHFAAIYGRIN  320 (929)
T ss_pred             HhhcccccCCchHHHHHHcCChhHHHHHHHc-----CCcccccCCCCCCchHHHHHcccHH
Confidence            4667777888888888888877777777764     3445666666666666666655433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.06  E-value=1.5e-10  Score=94.21  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=75.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC------------CC--
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR------------PG--   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~------------~g--   67 (283)
                      ++.+|++|.||||-|+.+||.+|++.|+..     ++..+.+.++|+||||-|++-.+.++...            .|  
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~-----gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~l  164 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLS-----GANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLL  164 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHc-----cCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccc
Confidence            678999999999999999999999999876     35688999999999999998877765421            11  


Q ss_pred             ChhhhHHHhhhhh-hhhccccccc--ccccccccCCcccccccch--hhhhHHhhHhHH
Q 041061           68 PVYQFQEELQWFE-CVKDIAPSHY--TMHRDTRKNMTAGDLFNRT--HEDQLKKAQDWI  121 (283)
Q Consensus        68 ~al~l~~~l~~~~-~v~~~~~~~~--~~~~n~~~G~T~~dl~~~~--~~~~~~~~~~~l  121 (283)
                      +++++........ .+.-++...+  ...+|+ .+.||.+++++.  ..++.+..++.+
T Consensus       165 tpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn-~eeta~~iARRT~~s~~lfe~~e~~~  222 (228)
T KOG0512|consen  165 TPLHLAAGNRNSRDTLELLLHDRYIHPGLKNN-LEETAFDIARRTSMSHYLFEIVEGCM  222 (228)
T ss_pred             hhhHHhhcccchHHHHHHHhhccccChhhhcC-ccchHHHHHHHhhhhHHHHHHHHHHh
Confidence            4454443222111 1111222222  235666 789999888665  333444444333

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.04  E-value=7e-11  Score=96.29  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             ccCCCChHHHHHHHhCCHH---HHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhh
Q 041061            5 VNQKGQTILHVAVRRRRHD---IFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFE   80 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~---iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~   80 (283)
                      +|++|+||||+|+.+|+.+   ++++|++.     +..+|.+| .+|+||||+|+..++.                   +
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~-----gadin~~~~~~g~T~Lh~A~~~~~~-------------------~  106 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEW-----GADINGKERVFGNTPLHIAVYTQNY-------------------E  106 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHc-----CCCccccCCCCCCcHHHHHHHhCCH-------------------H
Confidence            4666666666666666653   45566554     34467776 3777777777766652                   2


Q ss_pred             hhhcccc--cccccccccccCCcccccccch
Q 041061           81 CVKDIAP--SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        81 ~v~~~~~--~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++.++.  ....+.+|+ .|+||..++...
T Consensus       107 i~~~Ll~~~g~d~n~~~~-~g~tpL~~A~~~  136 (154)
T PHA02736        107 LATWLCNQPGVNMEILNY-AFKTPYYVACER  136 (154)
T ss_pred             HHHHHHhCCCCCCccccC-CCCCHHHHHHHc
Confidence            2333332  223456677 899998877643

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.02  E-value=4.5e-10  Score=107.08  Aligned_cols=18  Identities=22%  Similarity=0.104  Sum_probs=13.4

Q ss_pred             ccccccccCCcccccccch
Q 041061           91 TMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        91 ~~~~n~~~G~T~~dl~~~~  109 (283)
                      .+..|. +|+||.+++++.
T Consensus       238 ~d~~~~-~g~tp~~LA~~~  255 (600)
T KOG0509|consen  238 LDKTNT-NGKTPFDLAQER  255 (600)
T ss_pred             cccccc-CCCCHHHHHHHh
Confidence            445666 899999998665

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.96  E-value=9e-10  Score=96.25  Aligned_cols=102  Identities=15%  Similarity=0.114  Sum_probs=72.2

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      |.-|+.|.+|||+|++.||..+++.|+.+     ++-+|..+.-.+||||+||..||.+.+..              ..+
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~r-----garvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgnt  102 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSR-----GARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNT  102 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhc-----ccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCC
Confidence            45588999999999999999999999886     35588888888999999999998765421              224


Q ss_pred             hhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccchh
Q 041061           69 VYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      +++-+--.++....+.++.. +.....|+ +|.||.|.++..-
T Consensus       103 plhyacfwgydqiaedli~~ga~v~icnk-~g~tpldkakp~l  144 (448)
T KOG0195|consen  103 PLHYACFWGYDQIAEDLISCGAAVNICNK-KGMTPLDKAKPML  144 (448)
T ss_pred             chhhhhhhcHHHHHHHHHhccceeeeccc-CCCCchhhhchHH
Confidence            55444333333333333332 34567888 9999999876543

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.94  E-value=1.1e-09  Score=103.99  Aligned_cols=101  Identities=14%  Similarity=0.122  Sum_probs=71.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g-----ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~  191 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYG-----ADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE  191 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCC-----CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCC
Confidence            3567889999999999999999999998863     4588999999999999998887654311              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++++.+...+..+.++.++..+ ....++. +|.||...+..
T Consensus       192 tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~-~g~TpL~~A~~  232 (434)
T PHA02874        192 SPLHNAAEYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAII  232 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCcCCCC-CCCCHHHHHHH
Confidence            6676666555555555544332 2334555 78888776543

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.92  E-value=1.4e-09  Score=93.31  Aligned_cols=102  Identities=10%  Similarity=0.023  Sum_probs=64.4

Q ss_pred             ccccc-CCCChHHHHHHHh---CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhc--CCccccc---C-------
Q 041061            2 LSTVN-QKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADM--KHYEYGI---R-------   65 (283)
Q Consensus         2 ie~~D-~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~--~~~~~~~---~-------   65 (283)
                      ++.+| .+|+||||+|+..   ++.+++++|+++     +..+|.+|.+|.||||+|+..  ++.+.+.   .       
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~-----gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~  153 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS-----GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN  153 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            45565 4899999998864   468999999986     356899999999999998754  3333221   0       


Q ss_pred             ----CCChhhhHHHh-hhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           66 ----PGPVYQFQEEL-QWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        66 ----~g~al~l~~~l-~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                          ..++++..... ...+.++-++.. ...+.+|+ .|+||.+++..+
T Consensus       154 ~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~-~g~tpl~la~~~  202 (209)
T PHA02859        154 KDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNK-SGYNCYDLIKFR  202 (209)
T ss_pred             ccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhh
Confidence                12445432111 122333333322 23456777 899998886543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.91  E-value=1.5e-09  Score=79.91  Aligned_cols=48  Identities=31%  Similarity=0.394  Sum_probs=42.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            9 GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         9 G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      |+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENG-----ADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTT-----TCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhc-----ccccccCCCCCCHHHHHHHcCCHH
Confidence            899999999999999999999864     468999999999999999988743

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02791 ankyrin-like protein; Provisional

Probab=98.90  E-value=2.1e-09  Score=96.43  Aligned_cols=96  Identities=14%  Similarity=0.063  Sum_probs=63.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC-------------CC--Chhhh
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR-------------PG--PVYQF   72 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~-------------~g--~al~l   72 (283)
                      +|+||||+|+.+|+.+++++|++.     +..+|.+|.+|+||||+|+..++.+.+..             .|  +++..
T Consensus        60 d~~TpLh~Aa~~g~~eiV~lLL~~-----Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~  134 (284)
T PHA02791         60 ENEFPLHQAATLEDTKIVKILLFS-----GMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYH  134 (284)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHH
Confidence            578999999999999999999875     34578889999999999998887654321             12  45555


Q ss_pred             HHHhhhhhhhhcccccccccccccccCCcccccccch
Q 041061           73 QEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        73 ~~~l~~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +...+..+.++.++... ....+...|.||..++...
T Consensus       135 Aa~~g~~eivk~LL~~~-~~~~d~~~g~TpLh~Aa~~  170 (284)
T PHA02791        135 AVMLNDVSIVSYFLSEI-PSTFDLAILLSCIHITIKN  170 (284)
T ss_pred             HHHcCCHHHHHHHHhcC-CcccccccCccHHHHHHHc
Confidence            54444455555544321 1112211578888876544

>PHA02946 ankyin-like protein; Provisional

Probab=98.90  E-value=1.7e-09  Score=103.12  Aligned_cols=53  Identities=15%  Similarity=0.183  Sum_probs=47.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ++.+|.+|+||||+|+++|+.+++++|+++     ++.+|.+|.+|+||||+|+..++
T Consensus        65 vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~-----GAdin~~d~~g~TpLh~A~~~~~  117 (446)
T PHA02946         65 PNETDDDGNYPLHIASKINNNRIVAMLLTH-----GADPNACDKQHKTPLYYLSGTDD  117 (446)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-----cCCCCCCCCCCCCHHHHHHHcCC
Confidence            467899999999999999999999999986     35689999999999999987654

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.89  E-value=1.2e-09  Score=106.54  Aligned_cols=99  Identities=16%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC----------------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR----------------   65 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~----------------   65 (283)
                      |+.+++++.||||.||.+|+.+.++.|++. .  ..+++|+.|..|+||||+|++.||.+++..                
T Consensus       299 I~~kn~d~~spLH~AA~yg~~ntv~rLL~~-~--~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~  375 (929)
T KOG0510|consen  299 INSKNKDEESPLHFAAIYGRINTVERLLQE-S--DTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS  375 (929)
T ss_pred             ccccCCCCCCchHHHHHcccHHHHHHHHhC-c--CccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence            467788888888888888888888888872 2  246788888888888888888888665321                


Q ss_pred             -CCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccc
Q 041061           66 -PGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGD  104 (283)
Q Consensus        66 -~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~d  104 (283)
                       ..++++.+...+....|..++..+ +...+|+ .|+++.+
T Consensus       376 dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~-~g~SA~~  415 (929)
T KOG0510|consen  376 DGNTALHLAAKYGNTSAVQKLISHGADIGVKNK-KGKSAFD  415 (929)
T ss_pred             CCchhhhHHHHhccHHHHHHHHHcCCceeeccc-ccccccc
Confidence             114555554444444454444332 3345666 7777766

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.89  E-value=1.9e-09  Score=102.29  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=71.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..              ..
T Consensus       150 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-----~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~  224 (434)
T PHA02874        150 VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG-----AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGF  224 (434)
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCC
Confidence            3567899999999999999999999999864     4578999999999999999988665321              22


Q ss_pred             ChhhhHHHhhhhhhhhcccccccccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++++.+.... .+.++.++.....+.++. +|.||..++.+
T Consensus       225 TpL~~A~~~~-~~~i~~Ll~~~~in~~d~-~G~TpLh~A~~  263 (434)
T PHA02874        225 TPLHNAIIHN-RSAIELLINNASINDQDI-DGSTPLHHAIN  263 (434)
T ss_pred             CHHHHHHHCC-hHHHHHHHcCCCCCCcCC-CCCCHHHHHHh
Confidence            5555543221 223333333344556666 89999887654

>PHA02946 ankyin-like protein; Provisional

Probab=98.88  E-value=1.8e-09  Score=103.02  Aligned_cols=28  Identities=14%  Similarity=0.112  Sum_probs=18.5

Q ss_pred             hhhcccccccccccccccCCcccccccch
Q 041061           81 CVKDIAPSHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        81 ~v~~~~~~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++-+++....+.+|+ +|+||..++.+.
T Consensus       225 iv~lLl~gadin~~d~-~G~TpLh~A~~~  252 (446)
T PHA02946        225 IINLLLPSTDVNKQNK-FGDSPLTLLIKT  252 (446)
T ss_pred             HHHHHHcCCCCCCCCC-CCCCHHHHHHHh
Confidence            3333444455677787 999999886554

>PHA02791 ankyrin-like protein; Provisional

Probab=98.87  E-value=1.9e-09  Score=96.70  Aligned_cols=97  Identities=10%  Similarity=0.014  Sum_probs=69.1

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +.+|.+|+||||+|+++|+.+++++|++.+     ..+|.+  +|+||||+|+..++.+.+..              ..+
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g-----a~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~T   96 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAG-----ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNT   96 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCc-----CCCcCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            457899999999999999999999999864     335555  47899999999888654321              237


Q ss_pred             hhhhHHHhhhhhhhhcccccc-cccccccccC-Cccccccc
Q 041061           69 VYQFQEELQWFECVKDIAPSH-YTMHRDTRKN-MTAGDLFN  107 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G-~T~~dl~~  107 (283)
                      +++.+...+..+.++.++... ..+.+++ +| .||..++.
T Consensus        97 pLh~Aa~~g~~eivk~Ll~~gadin~~~~-~g~~TpL~~Aa  136 (284)
T PHA02791         97 ALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAV  136 (284)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCC-CCCcHHHHHHH
Confidence            788777767666666655433 2344555 55 57876654

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.86  E-value=2.5e-09  Score=102.76  Aligned_cols=56  Identities=16%  Similarity=0.239  Sum_probs=49.0

Q ss_pred             cccccCC-CChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQK-GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~-G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+ |+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.
T Consensus       160 in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g-----ad~n~~d~~g~tpLh~A~~~~~~~i  216 (477)
T PHA02878        160 INMKDRHKGNTALHYATENKDQRLTELLLSYG-----ANVNIPDKTNNSPLHHAVKHYNKPI  216 (477)
T ss_pred             CCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHhCCHHH
Confidence            3567777 999999999999999999999864     4689999999999999999887554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.84  E-value=3e-09  Score=78.01  Aligned_cols=50  Identities=24%  Similarity=0.238  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .||+|||+|+.+||.+++++|+..     ++.++.+|+.|-|||--|+..||.++
T Consensus        33 ggR~plhyAAD~GQl~ilefli~i-----GA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISI-----GANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHh-----ccccCCccccCCcHHHHHHHHhhHHH
Confidence            699999999999999999999986     56799999999999999999999654

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.83  E-value=4.5e-09  Score=85.57  Aligned_cols=56  Identities=13%  Similarity=0.075  Sum_probs=47.7

Q ss_pred             ccccc-CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVN-QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D-~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+| .+|+||||+|+++|+.+++++|+++.    +..+|.+|.+|.||||+|+..++.+
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~----g~d~n~~~~~g~tpL~~A~~~~~~~  140 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCNQP----GVNMEILNYAFKTPYYVACERHDAK  140 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCC----CCCCccccCCCCCHHHHHHHcCCHH
Confidence            45667 48999999999999999999998742    3468999999999999999888743

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.82  E-value=3.9e-09  Score=101.37  Aligned_cols=99  Identities=15%  Similarity=0.092  Sum_probs=68.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhc-CCccccc---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADM-KHYEYGI---------------R   65 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~-~~~~~~~---------------~   65 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++.     +..+|.+|.+|+||||+|+.. ++.+.+.               .
T Consensus       194 ~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~-----ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~  268 (477)
T PHA02878        194 VNIPDKTNNSPLHHAVKHYNKPIVHILLEN-----GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYIL  268 (477)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCC
Confidence            466889999999999999999999999986     356899999999999999965 4433321               0


Q ss_pred             CCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           66 PGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        66 ~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ..++++.+  ....+.++.++.. ...+..|. +|.||.+++.+
T Consensus       269 g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~-~g~TpL~~A~~  309 (477)
T PHA02878        269 GLTALHSS--IKSERKLKLLLEYGADINSLNS-YKLTPLSSAVK  309 (477)
T ss_pred             CCCHHHHH--ccCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHH
Confidence            22555555  2222233333322 23456677 88999877643

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.81  E-value=2.4e-09  Score=109.57  Aligned_cols=101  Identities=23%  Similarity=0.271  Sum_probs=74.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.++.+|.||||+||.+|+.++|++|+++     ++++|.+|+.|.||||.|+..|+.++...              ..
T Consensus       533 v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~-----gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~  607 (1143)
T KOG4177|consen  533 VDLRTGRGYTPLHVAVHYGNVDLVKFLLEH-----GADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGF  607 (1143)
T ss_pred             eehhcccccchHHHHHhcCCchHHHHhhhC-----CccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCc
Confidence            577889999999999999999999999997     46799999999999999999998766421              22


Q ss_pred             ChhhhHHHhhhhhhhhccccccc------ccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSHY------TMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~~------~~~~n~~~G~T~~dl~~~  108 (283)
                      +++.++..++.++.++.+.....      ....|. .|.+|.++.++
T Consensus       608 TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~-~g~~p~~v~e~  653 (1143)
T KOG4177|consen  608 TPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENR-KGAVPEDVAEE  653 (1143)
T ss_pred             chhHHHHHhcccchhhHHHhccCccccccchhhhh-cccChhhHHHH
Confidence            56777777766665544322111      233444 78888876543

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.80  E-value=1.7e-09  Score=100.00  Aligned_cols=56  Identities=25%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .|..|+.|+|+||+|+.+||.+|+++|++.     ++++|.++..|||+||.++..|+.+.
T Consensus       143 ~~IanrhGhTcLmIa~ykGh~~I~qyLle~-----gADvn~ks~kGNTALH~caEsG~vdi  198 (615)
T KOG0508|consen  143 PEIANRHGHTCLMIACYKGHVDIAQYLLEQ-----GADVNAKSYKGNTALHDCAESGSVDI  198 (615)
T ss_pred             CcccccCCCeeEEeeeccCchHHHHHHHHh-----CCCcchhcccCchHHHhhhhcccHHH
Confidence            367899999999999999999999999986     46799999999999999999988554

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.80  E-value=5.3e-09  Score=94.31  Aligned_cols=99  Identities=10%  Similarity=-0.042  Sum_probs=52.1

Q ss_pred             cccCCCChH-HHHHHHhCCHHHHHHHHHhCCCCcccccccc----cCCCCcHHHHHHhcCCcccccC-------------
Q 041061            4 TVNQKGQTI-LHVAVRRRRHDIFQFIVEKMPLYVPKWAARI----DENGYTILHHVADMKHYEYGIR-------------   65 (283)
Q Consensus         4 ~~D~~G~t~-LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~----D~~GnTpLHlAa~~~~~~~~~~-------------   65 (283)
                      .+|++|+|+ ||.|++.|+.+++++|++++     +.+|.+    |++|.||||+|+..++.+.+..             
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~G-----AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~  101 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLG-----ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE  101 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCC-----CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC
Confidence            455555553 44444445666666666543     335554    3466666666666555432210             


Q ss_pred             --CCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           66 --PGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        66 --~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                        ..+++..+...++.+.++.++.. ...+.++. +|.||.+++.+
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~-~G~TpL~~A~~  146 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTN-DMVTPIELALM  146 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHH
Confidence              11344444444444444444433 23455666 89999887644

>PHA02795 ankyrin-like protein; Provisional

Probab=98.78  E-value=7.5e-09  Score=97.30  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=47.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     ++.+|.+|.+|+||||+|+..|+
T Consensus       214 IN~kD~~G~TpLh~Aa~~g~~eiVelLL~~-----GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        214 INQLDAGGRTLLYRAIYAGYIDLVSWLLEN-----GANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             cCcCCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHcCC
Confidence            577899999999999999999999999986     45689999999999999998875

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.78  E-value=6.1e-09  Score=100.53  Aligned_cols=56  Identities=13%  Similarity=0.261  Sum_probs=50.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     ++.+|.+|.+|+||||+|+..++.+.
T Consensus       249 vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~-----Gadin~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        249 INKKDKKGFNPLLISAKVDNYEAFNYLLKL-----GDDIYNVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             CCCCCCCCCCHHHHHHHhcCHHHHHHHHHc-----CCCccccCCCCCCHHHHHHHcCCHHH
Confidence            477899999999999999999999999986     45699999999999999999988654

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.76  E-value=1e-08  Score=84.76  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=47.2

Q ss_pred             ccccc-CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVN-QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D-~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+| ..|+||||+|+.+|+.+++++|+++.    +..++.+|.+|+||||+|+..++.
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~----gad~~~~d~~g~tpL~~A~~~~~~  141 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQL----GVNLGAINYQHETAYHIAYKMRDR  141 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhcc----CCCccCcCCCCCCHHHHHHHcCCH
Confidence            45677 58999999999999999999998532    356889999999999999988874

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.76  E-value=7.6e-09  Score=96.72  Aligned_cols=51  Identities=29%  Similarity=0.414  Sum_probs=46.2

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .-|++|-|+||-|+-.||.+||++|++.     +..+|..|.||+||||+||..++
T Consensus       578 qpNdEGITaLHNAiCaghyeIVkFLi~~-----ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  578 QPNDEGITALHNAICAGHYEIVKFLIEF-----GANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             CCCccchhHHhhhhhcchhHHHHHHHhc-----CCcccCccCCCCchhhhhhhcCc
Confidence            3578999999999999999999999986     56799999999999999997665

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.75  E-value=9.8e-09  Score=96.63  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=22.9

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .+|+||||+|+..|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+
T Consensus       100 ~~g~tpL~~A~~~~~~~iv~~Ll~~g-----ad~~~~~~~g~tpLh~A~~~~~  147 (413)
T PHA02875        100 KDGMTPLHLATILKKLDIMKLLIARG-----ADPDIPNTDKFSPLHLAVMMGD  147 (413)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHcCC
Confidence            34455555555555555555554432     2344445555555555554444

>PHA03095 ankyrin-like protein; Provisional

Probab=98.73  E-value=1.3e-08  Score=97.16  Aligned_cols=100  Identities=14%  Similarity=0.033  Sum_probs=64.5

Q ss_pred             cccccCCCChHHHHHHHhC---CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC-cccccC------------
Q 041061            2 LSTVNQKGQTILHVAVRRR---RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH-YEYGIR------------   65 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g---~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~-~~~~~~------------   65 (283)
                      ++.+|..|+||||+|+.++   +.+++++|++.     +..+|.+|.+|+||||+|+..++ .+.+..            
T Consensus        40 vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~-----Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~  114 (471)
T PHA03095         40 VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEA-----GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD  114 (471)
T ss_pred             cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCC
Confidence            3567888899999999988   88999998876     35688888899999999998884 433210            


Q ss_pred             --CCChhhhHHHh--hhhhhhhccccc-ccccccccccCCccccccc
Q 041061           66 --PGPVYQFQEEL--QWFECVKDIAPS-HYTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        66 --~g~al~l~~~l--~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~  107 (283)
                        ..++++.+..-  ...+.++.++.. ...+.+|. +|.||.+++.
T Consensus       115 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~-~g~tpL~~a~  160 (471)
T PHA03095        115 KVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDL-YGMTPLAVLL  160 (471)
T ss_pred             CCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHH
Confidence              22555554311  112233333322 22345566 7888876543

>PHA02741 hypothetical protein; Provisional

Probab=98.72  E-value=1.6e-08  Score=83.86  Aligned_cols=55  Identities=18%  Similarity=0.254  Sum_probs=47.1

Q ss_pred             cccccC-CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQ-KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~-~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+|. +|+||||+|+.+++.+++++|++..    +..++.+|.+|.||||+|+..++.
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~----g~~~~~~n~~g~tpL~~A~~~~~~  145 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCCQP----GIDLHFCNADNKSPFELAIDNEDV  145 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCC----CCCCCcCCCCCCCHHHHHHHCCCH
Confidence            456674 8999999999999999999998742    346889999999999999988864

>PHA02798 ankyrin-like protein; Provisional

Probab=98.72  E-value=1.4e-08  Score=97.92  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=49.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|..|+||||+||.+|+.+++++|+++     ++.+|.+|.+|+||||+|+..++.+
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~-----GAdin~~d~~G~TpL~~A~~~~~~~  305 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNRKIFEYLLQL-----GGDINIITELGNTCLFTAFENESKF  305 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcHHHHHHHHHc-----CCcccccCCCCCcHHHHHHHcCcHH
Confidence            467899999999999999999999999986     4569999999999999999988754

>PHA02730 ankyrin-like protein; Provisional

Probab=98.72  E-value=1.3e-08  Score=100.08  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=45.3

Q ss_pred             cccCCCChHHHHHHHhC---CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcC
Q 041061            4 TVNQKGQTILHVAVRRR---RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMK   58 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g---~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~   58 (283)
                      .+|.+|+||||+|+.+|   +.+++++|+++     ++.+|.+|++|+||||+|+..+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~-----GAdin~kD~~G~TPLh~Aa~~~   88 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSR-----GVERLCRNNEGLTPLGVYSKRK   88 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhC-----CCCCcccCCCCCChHHHHHHcC
Confidence            67899999999999997   59999999986     4669999999999999999866

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.71  E-value=1.2e-08  Score=97.71  Aligned_cols=53  Identities=21%  Similarity=0.366  Sum_probs=31.3

Q ss_pred             cccCCCChHHHHHHHhC--CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            4 TVNQKGQTILHVAVRRR--RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g--~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ..|.+|+||||+|+..|  +.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus       136 ~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-----~din~~d~~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        136 IKNSDGENLLHLYLESNKIDLKILKLLIDKG-----VDINAKNRYGYTPLHIAVEKGNID  190 (480)
T ss_pred             ccCCCCCcHHHHHHHcCCChHHHHHHHHHCC-----CCcccccCCCCCHHHHHHHhCCHH
Confidence            44556666666666666  566666665542     335666666666666666665543

>PHA03095 ankyrin-like protein; Provisional

Probab=98.70  E-value=1.5e-08  Score=96.79  Aligned_cols=54  Identities=17%  Similarity=0.102  Sum_probs=28.6

Q ss_pred             ccccCCCChHHHHHHHhCCH--HHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRH--DIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~--~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.+|.+|+||||+|+.+|+.  .+++.+++.     +..+|.+|.+|+||||+|+..|+.+
T Consensus       216 ~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~-----g~din~~d~~g~TpLh~A~~~~~~~  271 (471)
T PHA03095        216 AATDMLGNTPLHSMATGSSCKRSLVLPLLIA-----GISINARNRYGQTPLHYAAVFNNPR  271 (471)
T ss_pred             cccCCCCCCHHHHHHhcCCchHHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCCHH
Confidence            34555566666666655543  344444443     2345555666666666665555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.70  E-value=2.7e-08  Score=85.42  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             ccccCCCChHHHHHHHhC--CHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHh
Q 041061            3 STVNQKGQTILHVAVRRR--RHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVAD   56 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g--~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~   56 (283)
                      +..|+.|+||||+|+.++  +.+++++|+++     +..+|.+| .+|.||||+|+.
T Consensus        45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~-----gadvn~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         45 NDCNDLYETPIFSCLEKDKVNVEILKFLIEN-----GADVNFKTRDNNLSALHHYLS   96 (209)
T ss_pred             hccCccCCCHHHHHHHcCCCCHHHHHHHHHC-----CCCCCccCCCCCCCHHHHHHH
Confidence            455667777777777644  66777777765     33466665 367777777664

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.69  E-value=1.1e-08  Score=97.82  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=70.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCccccc---CCC----------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGI---RPG----------   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~---~~g----------   67 (283)
                      ++..|++|-|+||+|+.+++.+++++|++++     +.+|+.+ .-|-||||+|+++|+...+.   ..|          
T Consensus        71 v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g-----advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G  145 (600)
T KOG0509|consen   71 VNNPDREGVTLLHWAAINNRLDVARYLISHG-----ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQG  145 (600)
T ss_pred             CCCCCcCCccceeHHHHcCcHHHHHHHHHcC-----CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCC
Confidence            3567889999999999999999999999874     4688888 78889999999999866532   122          


Q ss_pred             -ChhhhHHHhhhhhhhhcccc-cccccccccccCCcccccccc
Q 041061           68 -PVYQFQEELQWFECVKDIAP-SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 -~al~l~~~l~~~~~v~~~~~-~~~~~~~n~~~G~T~~dl~~~  108 (283)
                       ++++++.......-+-.++. ....+.+++ +|.||+..+..
T Consensus       146 ~~~lHla~~~~~~~~vayll~~~~d~d~~D~-~grTpLmwAay  187 (600)
T KOG0509|consen  146 LTPLHLAAQFGHTALVAYLLSKGADIDLRDN-NGRTPLMWAAY  187 (600)
T ss_pred             CcHHHHHHHhCchHHHHHHHHhcccCCCcCC-CCCCHHHHHHH
Confidence             34444444333333322221 244567777 99999887654

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.69  E-value=1.9e-08  Score=94.68  Aligned_cols=54  Identities=9%  Similarity=0.084  Sum_probs=38.9

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.++.+|.||||+|+..|+.+++++|++.+     ..++.+|.+|+||||.|+..|+.+
T Consensus        29 n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~t~L~~A~~~g~~~   82 (413)
T PHA02875         29 NFEIYDGISPIKLAMKFRDSEAIKLLMKHG-----AIPDVKYPDIESELHDAVEEGDVK   82 (413)
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCccccCCCcccHHHHHHHCCCHH
Confidence            455678888888888888888888888764     335566666666666666666544

>PHA02917 ankyrin-like protein; Provisional

Probab=98.67  E-value=3.1e-08  Score=98.65  Aligned_cols=98  Identities=10%  Similarity=0.069  Sum_probs=67.6

Q ss_pred             ccccCCCChHHHHHHHh---CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc--------cCCC----
Q 041061            3 STVNQKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG--------IRPG----   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~--------~~~g----   67 (283)
                      +.+|++|+||||+|+..   |+.+++++|++.+     +.++.+|.+|+||||.|+..|+.+..        ...|    
T Consensus        26 ~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g-----a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~  100 (661)
T PHA02917         26 DTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG-----TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNI  100 (661)
T ss_pred             cccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC-----CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCC
Confidence            45699999999998665   7899999999863     56889999999999999998874321        1111    


Q ss_pred             ----ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccc
Q 041061           68 ----PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLF  106 (283)
Q Consensus        68 ----~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~  106 (283)
                          +.+.++..-...+.++.++.. ...+.++. +|.||.+.+
T Consensus       101 ~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~-~g~T~L~~~  143 (661)
T PHA02917        101 NDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCE-NHRSVIENY  143 (661)
T ss_pred             CCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCC-CCccHHHHH
Confidence                122233333334555555533 23456666 899999854

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.67  E-value=4.6e-08  Score=97.67  Aligned_cols=55  Identities=20%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++.     +..+|.+|.+|+||||+|+..++.+
T Consensus       108 in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~-----Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322        108 PNCRDYDGRTPLHIACANGHVQVVRVLLEF-----GADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             CCCcCCCCCcHHHHHHHCCCHHHHHHHHHC-----CCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            467899999999999999999999999986     3568999999999999999988754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.61  E-value=3.3e-08  Score=98.93  Aligned_cols=53  Identities=21%  Similarity=0.239  Sum_probs=46.3

Q ss_pred             ccccCCCChHHHHHHHhCCH-----HHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            3 STVNQKGQTILHVAVRRRRH-----DIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~-----~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +.+|..|+||||+|+.+|+.     +++++|++.     ++.+|.+|++|+||||+|+++++.
T Consensus       491 N~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~-----GADIN~~d~~G~TPLh~A~~~g~~  548 (764)
T PHA02716        491 AVCETSGMTPLHVSIISHTNANIVMDSFVYLLSI-----QYNINIPTKNGVTPLMLTMRNNRL  548 (764)
T ss_pred             cccCCCCCCHHHHHHHcCCccchhHHHHHHHHhC-----CCCCcccCCCCCCHHHHHHHcCCc
Confidence            56789999999999999987     455999986     456999999999999999998875

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.58  E-value=5.2e-08  Score=93.30  Aligned_cols=102  Identities=19%  Similarity=0.047  Sum_probs=70.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCC------CcHHHHHHhcCC--ccccc---------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENG------YTILHHVADMKH--YEYGI---------   64 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~G------nTpLHlAa~~~~--~~~~~---------   64 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..++..|.+|      +||||.|+..++  .+.+.         
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-----a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~di  243 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNG-----ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPI  243 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcC-----CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCC
Confidence            3567889999999999999999999999864     4577778888      888888887776  43321         


Q ss_pred             -----CCCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           65 -----RPGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        65 -----~~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                           ...++++.+...+..+.++.++..+ ..+.++. +|+||.+++.+.
T Consensus       244 n~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~-~g~tpl~~A~~~  293 (480)
T PHA03100        244 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNK-YGDTPLHIAILN  293 (480)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHh
Confidence                 0235666655444444555444332 3456777 899998887543

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.57  E-value=5.5e-08  Score=97.52  Aligned_cols=101  Identities=16%  Similarity=0.021  Sum_probs=66.1

Q ss_pred             cccccCCCChHHHHHHHhC-CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------C
Q 041061            2 LSTVNQKGQTILHVAVRRR-RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g-~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~   66 (283)
                      ++.+|..|+||||+|+..+ +.+++++|++.     +..+|.+|.+|+||||+|+..++.+.+..              .
T Consensus       334 in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~-----gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g  408 (682)
T PHA02876        334 VNAADRLYITPLHQASTLDRNKDIVITLLEL-----GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI  408 (682)
T ss_pred             CCCcccCCCcHHHHHHHhCCcHHHHHHHHHc-----CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence            4567888999999998864 67788888765     45688899999999999998887654321              2


Q ss_pred             CChhhhHHHhhh-hhhhhccccc-ccccccccccCCcccccccc
Q 041061           67 GPVYQFQEELQW-FECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        67 g~al~l~~~l~~-~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      +++++.+..... ...++.++.. ...+.+|. +|.||..++.+
T Consensus       409 ~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~-~G~TpLh~Aa~  451 (682)
T PHA02876        409 GTALHFALCGTNPYMSVKTLIDRGANVNSKNK-DLSTPLHYACK  451 (682)
T ss_pred             CchHHHHHHcCCHHHHHHHHHhCCCCCCcCCC-CCChHHHHHHH
Confidence            355555432211 1123333222 23456777 89999888754

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.55  E-value=9.4e-08  Score=95.69  Aligned_cols=52  Identities=19%  Similarity=0.185  Sum_probs=44.6

Q ss_pred             ccc-cCCCChHHHHHHHh--CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            3 STV-NQKGQTILHVAVRR--RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         3 e~~-D~~G~t~LH~Av~~--g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +.+ |+.|+||||+|+.+  ++.+++++|+++     +..+|.+|.+|+||||+|+..++
T Consensus       170 N~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~-----GADVN~kD~~G~TPLH~Aa~~g~  224 (764)
T PHA02716        170 NYVCKKTGYGILHAYLGNMYVDIDILEWLCNN-----GVNVNLQNNHLITPLHTYLITGN  224 (764)
T ss_pred             ccccCCCCCcHHHHHHHhccCCHHHHHHHHHc-----CCCCCCCCCCCCCHHHHHHHcCC
Confidence            455 88899999998754  678999999986     45699999999999999998875

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.55  E-value=1e-07  Score=57.03  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=28.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccC
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDE   45 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~   45 (283)
                      +|+||||+|+++|+.+++++|++++     ..+|.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g-----a~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG-----ADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT-----SCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc-----CCCCCCCC
Confidence            6999999999999999999999964     45777774

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=98.55  E-value=1.2e-07  Score=72.49  Aligned_cols=53  Identities=26%  Similarity=0.379  Sum_probs=45.9

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      .+|.+|+||||+|+++++.+++++|++.+.     ..+.+|..|.||||.|+..++.+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~-----~~~~~~~~g~~~l~~a~~~~~~~   54 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGA-----DVNAKDNDGRTPLHLAAKNGHLE   54 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCC-----CCCccCCCCCcHHHHHHHcCCHH
Confidence            467899999999999999999999998643     34899999999999999887643

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02798 ankyrin-like protein; Provisional

Probab=98.55  E-value=6e-08  Score=93.54  Aligned_cols=53  Identities=15%  Similarity=0.145  Sum_probs=45.0

Q ss_pred             cccccCCCChHHHHHHHh-----CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRR-----RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~-----g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ++.+|.+|+||||.|+.+     ++.+++++|+++     ++.+|.+|.+|+||||+|+.++.
T Consensus        64 vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~-----GadiN~~d~~G~TpLh~a~~~~~  121 (489)
T PHA02798         64 VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-----GADINKKNSDGETPLYCLLSNGY  121 (489)
T ss_pred             CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHC-----CCCCCCCCCCcCcHHHHHHHcCC
Confidence            467889999999999875     668999999986     45699999999999999998753

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.54  E-value=1.5e-07  Score=79.31  Aligned_cols=85  Identities=21%  Similarity=0.180  Sum_probs=62.5

Q ss_pred             ccccCCCChHHHHHHHhCC-----HHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhh
Q 041061            3 STVNQKGQTILHVAVRRRR-----HDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQ   77 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~-----~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~   77 (283)
                      +.+|.+|.|+||+|+.+++     .+++++|++.+..  ....+.+|.+|+||||+|+..++...               
T Consensus       100 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~--~~~~~~~~~~g~tpl~~A~~~~~~~~---------------  162 (235)
T COG0666         100 NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD--LDVNNLRDEDGNTPLHWAALNGDADI---------------  162 (235)
T ss_pred             ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCC--CCCccccCCCCCchhHHHHHcCchHH---------------
Confidence            6789999999999999999     9999999987430  13677889999999999999887321               


Q ss_pred             hhhhhhcccc-cccccccccccCCcccccccch
Q 041061           78 WFECVKDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        78 ~~~~v~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                          ++.+++ ....+.+|. .|.|+.+.....
T Consensus       163 ----~~~ll~~~~~~~~~~~-~g~t~l~~a~~~  190 (235)
T COG0666         163 ----VELLLEAGADPNSRNS-YGVTALDPAAKN  190 (235)
T ss_pred             ----HHHHHhcCCCCccccc-CCCcchhhhccc
Confidence                111111 122344466 899998876554

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=7.2e-08  Score=86.81  Aligned_cols=78  Identities=29%  Similarity=0.263  Sum_probs=62.2

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcc-
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDI-   85 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~-   85 (283)
                      ..|+|+|.+||.+|+.++++.||.-     ++++|.||.||-|+|..|+..||.+.                   ++-+ 
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLac-----gAdVNiQDdDGSTALMCA~EHGhkEi-------------------vklLL  393 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLAC-----GADVNIQDDDGSTALMCAAEHGHKEI-------------------VKLLL  393 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHc-----cCCCccccCCccHHHhhhhhhChHHH-------------------HHHHh
Confidence            4799999999999999999999875     56799999999999999999998432                   2222 


Q ss_pred             -cccccccccccccCCcccccccch
Q 041061           86 -APSHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        86 -~~~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                       .|.......+. ||-|++.++.+.
T Consensus       394 A~p~cd~sLtD~-DgSTAl~IAlea  417 (452)
T KOG0514|consen  394 AVPSCDISLTDV-DGSTALSIALEA  417 (452)
T ss_pred             ccCcccceeecC-CCchhhhhHHhc
Confidence             23344455666 999999887654

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.53  E-value=8.9e-08  Score=95.99  Aligned_cols=56  Identities=14%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|..|+||||+|+++|+.+++++|++++     +.+|..|.+|.||||+|+..++.+.
T Consensus       171 vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~G-----ad~n~~~~~g~t~L~~A~~~~~~~i  226 (682)
T PHA02876        171 VNAKDIYCITPIHYAAERGNAKMVNLLLSYG-----ADVNIIALDDLSVLECAVDSKNIDT  226 (682)
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-----CCcCccCCCCCCHHHHHHHcCCHHH
Confidence            4678999999999999999999999999863     5689999999999999999887543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.51  E-value=1.1e-07  Score=97.20  Aligned_cols=59  Identities=20%  Similarity=0.254  Sum_probs=43.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCC--------------------------CcccccccccCCCCcHHHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPL--------------------------YVPKWAARIDENGYTILHHVA   55 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~--------------------------~~~~~vn~~D~~GnTpLHlAa   55 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++....                          ..+..+|.+|.+|+||||+|+
T Consensus       584 in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~  663 (823)
T PLN03192        584 VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM  663 (823)
T ss_pred             CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            467889999999988888888888877653210                          023467788888888888888


Q ss_pred             hcCCc
Q 041061           56 DMKHY   60 (283)
Q Consensus        56 ~~~~~   60 (283)
                      ..|+.
T Consensus       664 ~~g~~  668 (823)
T PLN03192        664 AEDHV  668 (823)
T ss_pred             HCCcH
Confidence            77764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.49  E-value=3.6e-08  Score=66.49  Aligned_cols=49  Identities=22%  Similarity=0.129  Sum_probs=23.7

Q ss_pred             cccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhccc-ccccccccccccCCcccccc
Q 041061           38 KWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIA-PSHYTMHRDTRKNMTAGDLF  106 (283)
Q Consensus        38 ~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~-~~~~~~~~n~~~G~T~~dl~  106 (283)
                      ..+|.+|.+|+||||+|++.|+.++                   ++.++ .....+.+|+ +|+||.+++
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~-------------------v~~Ll~~g~d~~~~d~-~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEV-------------------VRLLLQNGADPNAKDK-DGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHH-------------------HHHHHHCT--TT---T-TS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHH-------------------HHHHHHCcCCCCCCcC-CCCCHHHhC
Confidence            5789999999999999999988432                   22222 2234567888 999998753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.49  E-value=1e-07  Score=80.64  Aligned_cols=89  Identities=20%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCC----------------------------cccccccccCCCCcHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY----------------------------VPKWAARIDENGYTILHH   53 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~----------------------------~~~~vn~~D~~GnTpLHl   53 (283)
                      +|..|+.|.|||.||+.+||..+|++|++++.++                            .+.++|.-|-+|-|||-+
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLly  232 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLY  232 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeee
Confidence            6788999999999999999999999999876531                            123456666666666666


Q ss_pred             HHhcCCcccccCCCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccchh
Q 041061           54 VADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        54 Aa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      |++.+|                   .+.++.++.++ +.....+ .|.++.|++-...
T Consensus       233 Avrgnh-------------------vkcve~Ll~sGAd~t~e~d-sGy~~mdlAValG  270 (296)
T KOG0502|consen  233 AVRGNH-------------------VKCVESLLNSGADVTQEDD-SGYWIMDLAVALG  270 (296)
T ss_pred             eecCCh-------------------HHHHHHHHhcCCCcccccc-cCCcHHHHHHHhh
Confidence            665555                   44455555443 3444555 7888888775544

>PF13606 Ank_3: Ankyrin repeat

Probab=98.46  E-value=2e-07  Score=54.56  Aligned_cols=25  Identities=28%  Similarity=0.510  Sum_probs=23.5

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhC
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKM   32 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~   32 (283)
                      +|+||||+|+++|+.|++++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            5999999999999999999999874

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.41  E-value=1.4e-05  Score=81.17  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=43.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ..|+||||+|+..|+.+++++|+++     ++++|.+|+.||||||+|+..+.
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~-----gadin~~d~~g~T~Lh~A~~~~~  220 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSED-----PADILTADSLGNTLLHLLVMENE  220 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcC-----CcchhhHhhhhhHHHHHHHhhhh
Confidence            4699999999999999999999886     35689999999999999998763

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.40  E-value=3.6e-07  Score=85.94  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +..+.+|.|.||+|+.+|..++.++|++.+     ..++.+|.||+||||.||.-|+.+.          +         
T Consensus       192 d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag-----~~~~~~D~dgWtPlHAAA~Wg~~~~----------~---------  247 (527)
T KOG0505|consen  192 DARHARGATALHVAAANGYTEVAALLLQAG-----YSVNIKDYDGWTPLHAAAHWGQEDA----------C---------  247 (527)
T ss_pred             cccccccchHHHHHHhhhHHHHHHHHHHhc-----cCcccccccCCCcccHHHHhhhHhH----------H---------
Confidence            456677999999999999999999999864     5689999999999999998776321          1         


Q ss_pred             hcccc-cccccccccccCCcccccccc
Q 041061           83 KDIAP-SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        83 ~~~~~-~~~~~~~n~~~G~T~~dl~~~  108 (283)
                      +.++. ....+.++. .|+||.|++.+
T Consensus       248 elL~~~ga~~d~~t~-~g~~p~dv~de  273 (527)
T KOG0505|consen  248 ELLVEHGADMDAKTK-MGETPLDVADE  273 (527)
T ss_pred             HHHHHhhcccchhhh-cCCCCccchhh
Confidence            11111 122345555 89999998876

>PHA02795 ankyrin-like protein; Provisional

Probab=98.40  E-value=2e-07  Score=87.84  Aligned_cols=77  Identities=12%  Similarity=0.002  Sum_probs=52.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcccc
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAP   87 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~   87 (283)
                      .|.+++|.|.++++.+++++|+++     ++.+|.+|.+|+||||+|+..|+.+                   .++.++.
T Consensus       187 ~~~t~l~~a~~~~~~eIve~LIs~-----GADIN~kD~~G~TpLh~Aa~~g~~e-------------------iVelLL~  242 (437)
T PHA02795        187 IQYTRGFLVDEPTVLEIYKLCIPY-----IEDINQLDAGGRTLLYRAIYAGYID-------------------LVSWLLE  242 (437)
T ss_pred             hccchhHHHHhcCHHHHHHHHHhC-----cCCcCcCCCCCCCHHHHHHHcCCHH-------------------HHHHHHH
Confidence            356666777777777777777664     4568999999999999999888733                   2222222


Q ss_pred             c-ccccccccccCCcccccccch
Q 041061           88 S-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        88 ~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      . ...+.++. +|.||..++.+.
T Consensus       243 ~GAdIN~~d~-~G~TpLh~Aa~~  264 (437)
T PHA02795        243 NGANVNAVMS-NGYTCLDVAVDR  264 (437)
T ss_pred             CCCCCCCcCC-CCCCHHHHHHHc
Confidence            2 23456777 899999887554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.39  E-value=2.2e-07  Score=81.52  Aligned_cols=53  Identities=25%  Similarity=0.283  Sum_probs=46.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +|..|....||||+|+.+||.+||+.|++.     .+++|+.++.||||||+|+.-|.
T Consensus        60 vn~tnmgddtplhlaaahghrdivqkll~~-----kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   60 VNSTNMGDDTPLHLAAAHGHRDIVQKLLSR-----KADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             cccccCCCCcchhhhhhcccHHHHHHHHHH-----hcccchhhccCCCchhhhhhhcH
Confidence            455667778999999999999999999986     45799999999999999998775

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.38  E-value=4.8e-07  Score=81.70  Aligned_cols=53  Identities=13%  Similarity=-0.017  Sum_probs=46.0

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccc
Q 041061            6 NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         6 D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~   63 (283)
                      |+.|+||||+|+++|+.+++++|+++     ++.+|.+| ..|+||||+|+..++.+.+
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~-----GADVN~~~~~~g~TpLh~Aa~~~~~eiv  120 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRY-----GADVNRYAEEAKITPLYISVLHGCLKCL  120 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCcCcccCCCCCCHHHHHHHcCCHHHH
Confidence            56899999999999999999999986     45689864 6899999999998887654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.35  E-value=4.2e-07  Score=93.49  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=51.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|+.|+||||.||.+|+.+|+++|+++     ++.+|..|.+|+||||.|+..|+.+..
T Consensus       566 v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~-----GA~vna~d~~g~TpL~iA~~lg~~~~~  622 (1143)
T KOG4177|consen  566 VNAKDKLGYTPLHQAAQQGHNDIAELLLKH-----GASVNAADLDGFTPLHIAVRLGYLSVV  622 (1143)
T ss_pred             ccccCCCCCChhhHHHHcChHHHHHHHHHc-----CCCCCcccccCcchhHHHHHhcccchh
Confidence            567899999999999999999999999997     467999999999999999999986643

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.34  E-value=1.4e-07  Score=85.00  Aligned_cols=102  Identities=17%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcC--Ccc---ccc------------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMK--HYE---YGI------------   64 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~--~~~---~~~------------   64 (283)
                      +|..|.+|+|+|||||.+.+.++|+.||+.+.    -.+|.+++-|.||..||+...  ...   .+.            
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgv----C~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKA  336 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGV----CDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKA  336 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCc----ccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhh
Confidence            57889999999999999999999999998754    468999999999999998432  111   110            


Q ss_pred             -C-CCChhhhHHHhhhhhhhhcccc-cccccccccccCCcccccccc
Q 041061           65 -R-PGPVYQFQEELQWFECVKDIAP-SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        65 -~-~g~al~l~~~l~~~~~v~~~~~-~~~~~~~n~~~G~T~~dl~~~  108 (283)
                       . ..++|-++-.-+..+.||.++. .+..+..++ +|-|++..+.|
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDd-DGSTALMCA~E  382 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDD-DGSTALMCAAE  382 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccC-CccHHHhhhhh
Confidence             0 1245555544455555665543 334566666 78887776654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.34  E-value=3.9e-07  Score=85.64  Aligned_cols=53  Identities=28%  Similarity=0.357  Sum_probs=48.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +..|.+|.|+||-||.-.+.+++++|+++     ++.+|++|++||||||-|+..+|.
T Consensus        67 ~~~n~DglTalhq~~id~~~e~v~~l~e~-----ga~Vn~~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   67 NLCNVDGLTALHQACIDDNLEMVKFLVEN-----GANVNAQDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             cccCCccchhHHHHHhcccHHHHHHHHHh-----cCCccccccccCCcchhhcccccH
Confidence            45788999999999999999999999987     467999999999999999988874

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.32  E-value=7.1e-07  Score=86.23  Aligned_cols=51  Identities=16%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             cccccCCCChHHHHHHHh---CCHHHHHHHHHhCCCCccccc-ccccCCCCcHHHHHHhc
Q 041061            2 LSTVNQKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWA-ARIDENGYTILHHVADM   57 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~v-n~~D~~GnTpLHlAa~~   57 (283)
                      ++.+|.+|+||||.|+..   |+.+++++|++++     +.+ +.+|.+|+||||+|+..
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-----adin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-----INVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-----CCcccccCCCCCCHHHHHHHh
Confidence            355666777777766654   4567777776652     345 56677777777776543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.30  E-value=8.7e-07  Score=87.04  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcccc
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAP   87 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~   87 (283)
                      -|+.||-+||--+|+|++++|+++     ++++|+||.+|||.||.-+..-.          .+|      ++.+.+...
T Consensus       239 fGEyPLSfAAC~nq~eivrlLl~~-----gAd~~aqDS~GNTVLH~lVi~~~----------~~M------y~~~L~~ga  297 (782)
T KOG3676|consen  239 FGEYPLSFAACTNQPEIVRLLLAH-----GADPNAQDSNGNTVLHMLVIHFV----------TEM------YDLALELGA  297 (782)
T ss_pred             eccCchHHHHHcCCHHHHHHHHhc-----CCCCCccccCCChHHHHHHHHHH----------HHH------HHHHHhcCC
Confidence            488999999999999999999986     56799999999999999986421          122      222221111


Q ss_pred             cccccccccccCCcccccccch
Q 041061           88 SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        88 ~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ......+|+ +|.||..++...
T Consensus       298 ~~l~~v~N~-qgLTPLtLAakl  318 (782)
T KOG3676|consen  298 NALEHVRNN-QGLTPLTLAAKL  318 (782)
T ss_pred             Ccccccccc-CCCChHHHHHHh
Confidence            122346777 999999887654

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.29  E-value=4.6e-07  Score=74.07  Aligned_cols=53  Identities=17%  Similarity=0.142  Sum_probs=47.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +.+.+.||||||-||+.++.+++.+|++.     ++++|++.+.-.||||+|+...+.
T Consensus       124 ~a~T~~GWTPLhSAckWnN~~va~~LLqh-----gaDVnA~t~g~ltpLhlaa~~rn~  176 (228)
T KOG0512|consen  124 EAKTNEGWTPLHSACKWNNFEVAGRLLQH-----GADVNAQTKGLLTPLHLAAGNRNS  176 (228)
T ss_pred             ccccccCccchhhhhcccchhHHHHHHhc-----cCcccccccccchhhHHhhcccch
Confidence            56788999999999999999999999986     467999999999999999976654

>PHA02792 ankyrin-like protein; Provisional

Probab=98.26  E-value=9.8e-07  Score=86.34  Aligned_cols=50  Identities=10%  Similarity=0.241  Sum_probs=38.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVAD   56 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~   56 (283)
                      ++.+|+.|+||||+|+.+++.+++++|+++     ++.+|.+|.+|+||||+|+.
T Consensus       403 IN~kD~~G~TPLh~Aa~~~n~eivelLLs~-----GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        403 INKIDKHGRSILYYCIESHSVSLVEWLIDN-----GADINITTKYGSTCIGICVI  452 (631)
T ss_pred             cccccccCcchHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHH
Confidence            456777888888888888888888888775     34578888888888888764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.25  E-value=3.5e-07  Score=89.08  Aligned_cols=101  Identities=20%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      +|..|-+|.|+||.||.+||.+++++|++.     +.+++..|.+|.+|||+|+..|+.+.++.              ..
T Consensus        42 ~n~qd~~gfTalhha~Lng~~~is~llle~-----ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~  116 (854)
T KOG0507|consen   42 HNLQDYSGFTLLHHAVLNGQNQISKLLLDY-----EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENE  116 (854)
T ss_pred             ccccCccchhHHHHHHhcCchHHHHHHhcc-----hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCc
Confidence            467788999999999999999999999875     46788899999999999999998665421              12


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      +.++....-..++.+..++.. ...-.+|+ +++|+.|++.+
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~adp~i~nn-s~~t~ldlA~q  157 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNADPFIRNN-SKETVLDLASR  157 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCCccccCc-ccccHHHHHHH
Confidence            344444333444444433322 22345676 78888887654

>PHA02792 ankyrin-like protein; Provisional

Probab=98.23  E-value=1.3e-06  Score=85.40  Aligned_cols=54  Identities=17%  Similarity=0.137  Sum_probs=48.6

Q ss_pred             CcccccCCCChHHHHHHHhC-------CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            1 MLSTVNQKGQTILHVAVRRR-------RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         1 ~ie~~D~~G~t~LH~Av~~g-------~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      |++..|+.|+||||+|+.++       +.|++++|+.++     +.+|.+|+.|.||||+|+...+
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-----~~~~~~d~~g~t~l~~~~~~~~  227 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHE-----KEMRYYTYREHTTLYYYVDKCD  227 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCC-----CCcCccCCCCChHHHHHHHccc
Confidence            46788999999999999999       899999999974     4589999999999999998773

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.23  E-value=1.6e-06  Score=63.61  Aligned_cols=68  Identities=26%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhccccc-ccc
Q 041061           13 LHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPS-HYT   91 (283)
Q Consensus        13 LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~~-~~~   91 (283)
                      ||+|+++|+.+++++|++...     .++.    |+||||+|+..|+.+.                   ++.++.. ...
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~-----~~~~----~~~~l~~A~~~~~~~~-------------------~~~Ll~~g~~~   52 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGA-----DINL----GNTALHYAAENGNLEI-------------------VKLLLENGADI   52 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTS-----TTTS----SSBHHHHHHHTTTHHH-------------------HHHHHHTTTCT
T ss_pred             CHHHHHcCCHHHHHHHHHCcC-----CCCC----CCCHHHHHHHcCCHHH-------------------HHHHHHhcccc
Confidence            899999999999999998632     2333    9999999999887432                   2222221 123


Q ss_pred             cccccccCCcccccccch
Q 041061           92 MHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        92 ~~~n~~~G~T~~dl~~~~  109 (283)
                      +.++. +|.||...+.+.
T Consensus        53 ~~~~~-~g~t~L~~A~~~   69 (89)
T PF12796_consen   53 NSQDK-NGNTALHYAAEN   69 (89)
T ss_dssp             T-BST-TSSBHHHHHHHT
T ss_pred             cccCC-CCCCHHHHHHHc
Confidence            44555 899998876543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.17  E-value=1.7e-06  Score=87.61  Aligned_cols=50  Identities=22%  Similarity=0.271  Sum_probs=41.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc--------------CCCCcHHHHHHhcCCcc
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID--------------ENGYTILHHVADMKHYE   61 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D--------------~~GnTpLHlAa~~~~~~   61 (283)
                      ..|+||||+|+.+|+.+++++|++++.     .+|.++              ..|.||||+|+..++.+
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GA-----dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~  189 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGA-----SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS  189 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCC-----CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHH
Confidence            579999999999999999999998753     344332              36999999999888744

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02917 ankyrin-like protein; Provisional

Probab=98.13  E-value=3.2e-06  Score=84.38  Aligned_cols=54  Identities=22%  Similarity=0.456  Sum_probs=47.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHh-cCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVAD-MKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~-~~~~   60 (283)
                      ++.+|..|+||||+|+.+++.+++++|++.     +..+|.+|.+|+||||+|+. .++.
T Consensus       445 IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~-----GAdin~~d~~G~T~L~~A~~~~~~~  499 (661)
T PHA02917        445 INMIDKRGETLLHKAVRYNKQSLVSLLLES-----GSDVNIRSNNGYTCIAIAINESRNI  499 (661)
T ss_pred             CCCCCCCCcCHHHHHHHcCCHHHHHHHHHC-----cCCCCCCCCCCCCHHHHHHHhCCCH
Confidence            477899999999999999999999999986     45699999999999999995 4443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=3e-06  Score=79.75  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      |+.+|..|+||||+||.-|+.+.++.|+..+     +.+..+|++|++|||.|+..|+..
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-----Adv~~kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAG-----ADVSIKNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcC-----CCccccccccccHHHHHHHcCCHH
Confidence            5788999999999999999999999999864     458899999999999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=98.09  E-value=3.7e-06  Score=83.10  Aligned_cols=51  Identities=12%  Similarity=0.077  Sum_probs=45.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccC-CCCcHHHHHHhc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDE-NGYTILHHVADM   57 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~-~GnTpLHlAa~~   57 (283)
                      ++.+|..|+||||+|+..++.+++++|++.     ++.+|.+|+ .|+||||.|+..
T Consensus       455 INakD~~G~TPLh~Aa~~~~~eive~LI~~-----GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        455 IDMIDNENKTLLYYAVDVNNIQFARRLLEY-----GASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             hhccCCCCCCHHHHHHHhCCHHHHHHHHHC-----CCCCCCCCCcCCcCHHHHHHHh
Confidence            578899999999999999999999999986     456999997 599999999974

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=97.95  E-value=8.4e-06  Score=54.23  Aligned_cols=28  Identities=29%  Similarity=0.579  Sum_probs=21.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIV   29 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll   29 (283)
                      ++.+|++|+||||+|+++|+.+++++|+
T Consensus        27 in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   27 INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4678999999999999999999999985

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.95  E-value=1.3e-05  Score=70.47  Aligned_cols=74  Identities=14%  Similarity=0.081  Sum_probs=58.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccc-cccCCCCcHHHHHHhcCCcccc--------------cCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAA-RIDENGYTILHHVADMKHYEYG--------------IRP   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn-~~D~~GnTpLHlAa~~~~~~~~--------------~~~   66 (283)
                      ++.+|.+|.++|-.|+..|+.+.+++|++.     ++++| .+|..|.||||.||-.|+.++-              .+.
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~-----gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvg  112 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLEL-----GADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVG  112 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHh-----CCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchh
Confidence            478899999999999999999999999986     34576 5789999999999999885431              123


Q ss_pred             CChhhhHHHhhhhh
Q 041061           67 GPVYQFQEELQWFE   80 (283)
Q Consensus        67 g~al~l~~~l~~~~   80 (283)
                      .++-+|+.-.+..+
T Consensus       113 rTAaqmAAFVG~H~  126 (396)
T KOG1710|consen  113 RTAAQMAAFVGHHE  126 (396)
T ss_pred             hhHHHHHHHhcchH
Confidence            46777776555444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.93  E-value=1.9e-05  Score=60.06  Aligned_cols=53  Identities=26%  Similarity=0.360  Sum_probs=46.7

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +..|..|.|+||+|+..++.+++++|++.+     ..++..|.+|.||+|.|+..++.
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~-----~~~~~~~~~~~~~l~~a~~~~~~   86 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-----ADVNARDKDGNTPLHLAARNGNL   86 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCCHHHHHHHcCcH
Confidence            467889999999999999999999999864     35788899999999999988763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.93  E-value=2.3e-06  Score=84.17  Aligned_cols=57  Identities=23%  Similarity=0.381  Sum_probs=51.0

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|.-|||+||+|+..++.++++.|++++     ..++.|| +.|.||||-|...|+.++.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhG-----idv~vqD~ESG~taLHRaiyyG~idca  102 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHG-----IDVFVQDEESGYTALHRAIYYGNIDCA  102 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcC-----ceeeeccccccchHhhHhhhhchHHHH
Confidence            4678999999999999999999999999973     5688898 5899999999999997764

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.92  E-value=6e-06  Score=78.24  Aligned_cols=53  Identities=25%  Similarity=0.389  Sum_probs=47.5

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .++.+-++.||+|++.|+.+||+|++++++   ..++++.|+.|.|+||-|+..++
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p---~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGP---SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCC---HHHHHHHhhhhhHHHHHHHHhcc
Confidence            356778999999999999999999999876   57899999999999999997765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=97.89  E-value=1.2e-05  Score=80.54  Aligned_cols=46  Identities=15%  Similarity=-0.025  Sum_probs=40.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061           12 ILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus        12 ~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .||.|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-----adin~~d~~G~TpLh~Aa~~g~~ei  130 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-----ADPNCRDYDGRTPLHIACANGHVQV  130 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCcHHHHHHHCCCHHH
Confidence            488999999999999999863     4689999999999999999998543

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=97.81  E-value=6.5e-06  Score=80.44  Aligned_cols=77  Identities=21%  Similarity=0.245  Sum_probs=62.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc--------------CCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI--------------RPG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~--------------~~g   67 (283)
                      ++..|.+|.+|||+|+.+|+.++++.++...     +.+|.+..+|.||||+||..+|.+++.              ..+
T Consensus        75 ldl~d~kg~~plhlaaw~g~~e~vkmll~q~-----d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~  149 (854)
T KOG0507|consen   75 LDLCDTKGILPLHLAAWNGNLEIVKMLLLQT-----DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKE  149 (854)
T ss_pred             hhhhhccCcceEEehhhcCcchHHHHHHhcc-----cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccc
Confidence            4667899999999999999999999998763     468999999999999999999987642              135


Q ss_pred             ChhhhHHHhhhhhhhh
Q 041061           68 PVYQFQEELQWFECVK   83 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~   83 (283)
                      +.++++.+++..+.+.
T Consensus       150 t~ldlA~qfgr~~Vvq  165 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQ  165 (854)
T ss_pred             cHHHHHHHhhhhHHHH
Confidence            7788877766655443

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=97.75  E-value=2.8e-05  Score=65.31  Aligned_cols=54  Identities=24%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++.+     ..++..|..|.|+||.|+..++.+
T Consensus       141 ~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~-----~~~~~~~~~g~t~l~~a~~~~~~~  194 (235)
T COG0666         141 NLRDEDGNTPLHWAALNGDADIVELLLEAG-----ADPNSRNSYGVTALDPAAKNGRIE  194 (235)
T ss_pred             cccCCCCCchhHHHHHcCchHHHHHHHhcC-----CCCcccccCCCcchhhhcccchHH
Confidence            456999999999999999999999999874     457888999999999999888743

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=97.74  E-value=1.1e-05  Score=68.47  Aligned_cols=54  Identities=19%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +|..|-+|-|||-+||+.||.++++.|++.     +++++..|..|++++.+|+..|..
T Consensus       219 VNvyDwNGgTpLlyAvrgnhvkcve~Ll~s-----GAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  219 VNVYDWNGGTPLLYAVRGNHVKCVESLLNS-----GADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             cceeccCCCceeeeeecCChHHHHHHHHhc-----CCCcccccccCCcHHHHHHHhhhH
Confidence            577899999999999999999999999987     467999999999999999998863

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.74  E-value=2.7e-05  Score=72.65  Aligned_cols=56  Identities=25%  Similarity=0.289  Sum_probs=48.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.++.+|+|+||.|++.|+.|++++|++++.      .=.+|..|-|||-.|+..|+.+.+
T Consensus       176 vn~ks~kGNTALH~caEsG~vdivq~Ll~~ga------~i~~d~~GmtPL~~Aa~tG~~~iV  231 (615)
T KOG0508|consen  176 VNAKSYKGNTALHDCAESGSVDIVQLLLKHGA------KIDVDGHGMTPLLLAAVTGHTDIV  231 (615)
T ss_pred             cchhcccCchHHHhhhhcccHHHHHHHHhCCc------eeeecCCCCchHHHHhhhcchHHH
Confidence            46788999999999999999999999998743      336889999999999999986654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.64  E-value=9.9e-05  Score=69.19  Aligned_cols=50  Identities=24%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++|.||||+|++.|+..-+++|.-.     +++++.+|.+|.||+.+|-..||.+
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~vY-----GAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAVY-----GADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhhc-----cCCCCCCCCCCCcHHHHHHhcCchH
Confidence            5799999999999999999998654     5679999999999999999888853

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.61  E-value=1.9e-05  Score=73.53  Aligned_cols=56  Identities=27%  Similarity=0.329  Sum_probs=47.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|-+.+|+||+|+..|+.+++++|++.    ++...+.+|.-|+|||.-|...+|.+
T Consensus       532 ~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~----~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  532 LETKDYDDRTALHVAAAEGHVEVVKFLLNA----CKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             ccccccccchhheeecccCceeHHHHHHHH----HcCCCChhhccCCCcchHhHhcCcHH
Confidence            467788999999999999999999999887    34568899999999999999888754

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.41  E-value=0.00013  Score=69.66  Aligned_cols=52  Identities=23%  Similarity=0.212  Sum_probs=45.0

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            6 NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         6 D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      +.+|+|+||+|++.|+....++|+..     +.++-..|.+|+|+|.+|-..|..++
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWy-----g~dv~~rda~g~t~l~yar~a~sqec  709 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWY-----GVDVMARDAHGRTALFYARQAGSQEC  709 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHh-----CccceecccCCchhhhhHhhcccHHH
Confidence            57899999999999999999999865     45688999999999999988776443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.38  E-value=0.00032  Score=65.89  Aligned_cols=88  Identities=23%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             ccCCCChH------HHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccCCCChhhhHHHhh
Q 041061            5 VNQKGQTI------LHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIRPGPVYQFQEELQ   77 (283)
Q Consensus         5 ~D~~G~t~------LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~   77 (283)
                      +|++|.+.      ||-.|+.|+.+..-.|+..     ++..|-.| ..|+||||.|++.|+..           |.|+.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~l-----GA~~N~~hpekg~TpLHvAAk~Gq~~-----------Q~ElL  186 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSL-----GAQANFFHPEKGNTPLHVAAKAGQIL-----------QAELL  186 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHc-----ccccCCCCcccCCchhHHHHhccchh-----------hhhHH
Confidence            57777665      9999999999887666664     45678777 68999999999998742           22221


Q ss_pred             hhhhhhcccccccccccccccCCcccccccch-hhhhHHh
Q 041061           78 WFECVKDIAPSHYTMHRDTRKNMTAGDLFNRT-HEDQLKK  116 (283)
Q Consensus        78 ~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~~~-~~~~~~~  116 (283)
                      .       +-.+.....|. +|.||.+++++. |.++.++
T Consensus       187 ~-------vYGAD~~a~d~-~GmtP~~~AR~~gH~~laeR  218 (669)
T KOG0818|consen  187 A-------VYGADPGAQDS-SGMTPVDYARQGGHHELAER  218 (669)
T ss_pred             h-------hccCCCCCCCC-CCCcHHHHHHhcCchHHHHH
Confidence            1       11223455666 999999998764 4444443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.10  E-value=0.00052  Score=68.01  Aligned_cols=57  Identities=19%  Similarity=0.262  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+|+||..|.+-..++.+++++.+.   ..+...++++|-|||-+||+.|..+
T Consensus       266 ~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga---~~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  266 PNAQDSNGNTVLHMLVIHFVTEMYDLALELGA---NALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             CCccccCCChHHHHHHHHHHHHHHHHHHhcCC---CccccccccCCCChHHHHHHhhhHH
Confidence            46789999999999999999999999998765   2567889999999999999988743

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.08  E-value=0.00036  Score=70.61  Aligned_cols=49  Identities=27%  Similarity=0.355  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ..|.|+||.|+.++...+.++|++++     +.+|+.|..|+||||.+...|+.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~g-----a~vn~~d~~g~~plh~~~~~g~~  702 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNG-----ADVNALDSKGRTPLHHATASGHT  702 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcC-----CcchhhhccCCCcchhhhhhccc
Confidence            46899999999999999999999874     45999999999999999998874

>PF13606 Ank_3: Ankyrin repeat

Probab=96.76  E-value=0.00061  Score=39.63  Aligned_cols=16  Identities=44%  Similarity=0.435  Sum_probs=14.1

Q ss_pred             CCCcHHHHHHhcCCcc
Q 041061           46 NGYTILHHVADMKHYE   61 (283)
Q Consensus        46 ~GnTpLHlAa~~~~~~   61 (283)
                      +|+||||+|+..|+.+
T Consensus         1 ~G~T~Lh~A~~~g~~e   16 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIE   16 (30)
T ss_pred             CCCCHHHHHHHhCCHH
Confidence            6999999999999854

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=96.71  E-value=0.00066  Score=40.18  Aligned_cols=16  Identities=38%  Similarity=0.445  Sum_probs=14.0

Q ss_pred             CCCcHHHHHHhcCCcc
Q 041061           46 NGYTILHHVADMKHYE   61 (283)
Q Consensus        46 ~GnTpLHlAa~~~~~~   61 (283)
                      +|+||||+|+..++.+
T Consensus         1 dG~TpLh~A~~~~~~~   16 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPD   16 (33)
T ss_dssp             TSBBHHHHHHHTTCHH
T ss_pred             CcccHHHHHHHHHHHH
Confidence            6999999999998754

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=96.54  E-value=0.0032  Score=52.53  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=50.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ||.+|.-|||+|..|+..|+.+++.+|+.++.    +.+-..|..|++++.+|-+.|+...
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~----a~vgv~d~ssldaaqlaek~g~~~f   61 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGV----AFVGVTDESSLDAAQLAEKGGAQAF   61 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCc----ccccccccccchHHHHHHhcChHHH
Confidence            68899999999999999999999999998742    5678899999999999999887543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=96.53  E-value=0.0018  Score=61.41  Aligned_cols=46  Identities=20%  Similarity=0.107  Sum_probs=37.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTIL   51 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpL   51 (283)
                      +|..|++||||||+|+.+++.-+++.|++.+.    +..-..=.|+.|+.
T Consensus       609 VNa~DSdGWTPLHCAASCNnv~~ckqLVe~Ga----avfAsTlSDmeTa~  654 (752)
T KOG0515|consen  609 VNAADSDGWTPLHCAASCNNVPMCKQLVESGA----AVFASTLSDMETAA  654 (752)
T ss_pred             ccCccCCCCchhhhhhhcCchHHHHHHHhccc----eEEeeecccccchh
Confidence            57889999999999999999999999999754    33444556777764

>smart00248 ANK ankyrin repeats

Probab=96.42  E-value=0.0047  Score=33.52  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=22.7

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhC
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKM   32 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~   32 (283)
                      +|.|++|+|+..++.+++++|++.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4899999999999999999998763

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.33  E-value=0.0023  Score=60.74  Aligned_cols=47  Identities=30%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061           12 ILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus        12 ~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++|+++-....+-.+..+...   ....++.+|..|+||||+|+..|+..
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~---~~~~id~~D~~g~TpLhlAV~Lg~~~   69 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAK---VSLVIDRRDPPGRTPLHLAVRLGHVE   69 (560)
T ss_pred             ccchhhhccchhhHHHHHhhh---hhceeccccCCCCccHHHHHHhcCHH
Confidence            499999888766665544432   24578999999999999999999854

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=95.89  E-value=0.0087  Score=53.07  Aligned_cols=55  Identities=16%  Similarity=0.084  Sum_probs=47.2

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      .++..+.||||+|+..|+.++.++|++.+     .-....+.-|.|+-.+||..||.+++
T Consensus        74 ~qhg~~YTpLmFAALSGn~dvcrllldaG-----a~~~~vNsvgrTAaqmAAFVG~H~CV  128 (396)
T KOG1710|consen   74 KQHGTLYTPLMFAALSGNQDVCRLLLDAG-----ARMYLVNSVGRTAAQMAAFVGHHECV  128 (396)
T ss_pred             ccccccccHHHHHHHcCCchHHHHHHhcc-----CccccccchhhhHHHHHHHhcchHHH
Confidence            45778999999999999999999999864     34566778899999999999997765

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=95.73  E-value=0.016  Score=43.00  Aligned_cols=46  Identities=15%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILH   52 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLH   52 (283)
                      |+.+|+-|-|||--|+-.||.++|++|++++.+     -...-.+|.+.+.
T Consensus        60 i~~kDKygITPLLsAvwEGH~~cVklLL~~GAd-----rt~~~PdG~~~~e  105 (117)
T KOG4214|consen   60 IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGAD-----RTIHAPDGTALIE  105 (117)
T ss_pred             cCCccccCCcHHHHHHHHhhHHHHHHHHHcCcc-----cceeCCCchhHHh
Confidence            578899999999999999999999999997643     3344556665553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=95.34  E-value=0.017  Score=59.01  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=38.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCC-cccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY-VPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~-~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ++.+|.+||||||+|+.+|+.+++..|++-+..+ ..-..+..+-.|.|+--+|..+|+
T Consensus       634 i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~  692 (975)
T KOG0520|consen  634 IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGH  692 (975)
T ss_pred             cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccc
Confidence            4667888888888888888888887776543321 112234455667888877777666

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=95.11  E-value=0.016  Score=54.61  Aligned_cols=54  Identities=15%  Similarity=0.019  Sum_probs=44.4

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .+++++...+.+|++.|....++.+.-.     +.+++.+|.|..|+||.||..|+.+.
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~-----g~D~~~~DyD~RTaLHvAAaEG~v~v  554 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQ-----GMDLETKDYDDRTALHVAAAEGHVEV  554 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHh-----cccccccccccchhheeecccCceeH
Confidence            3567788999999999999988766433     35689999999999999999998543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.03  E-value=0.36  Score=48.69  Aligned_cols=62  Identities=15%  Similarity=0.192  Sum_probs=44.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCC---------------ccccccc----------------ccCCCCcH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY---------------VPKWAAR----------------IDENGYTI   50 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~---------------~~~~vn~----------------~D~~GnTp   50 (283)
                      +|-+|.-|+++||+|+.+.+.++.++|+++....               .+.+++.                .-..+-||
T Consensus        55 inc~d~lGr~al~iai~nenle~~eLLl~~~~~~gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditP  134 (822)
T KOG3609|consen   55 INCRDPLGRLALHIAIDNENLELQELLLDTSSEEGDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITP  134 (822)
T ss_pred             hhccChHhhhceecccccccHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccH
Confidence            5678899999999999999999999998864110               0011111                12346799


Q ss_pred             HHHHHhcCCcccc
Q 041061           51 LHHVADMKHYEYG   63 (283)
Q Consensus        51 LHlAa~~~~~~~~   63 (283)
                      |-+||..++++++
T Consensus       135 liLAAh~NnyEil  147 (822)
T KOG3609|consen  135 LMLAAHLNNFEIL  147 (822)
T ss_pred             HHHHHHhcchHHH
Confidence            9999999887754

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=94.86  E-value=0.03  Score=56.22  Aligned_cols=46  Identities=22%  Similarity=0.278  Sum_probs=41.3

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhc
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADM   57 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~   57 (283)
                      +.|+||||-|..+|+.|++.+|++++     +.+..+|++|-.||.+-.+-
T Consensus        84 ESG~taLHRaiyyG~idca~lLL~~g-----~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen   84 ESGYTALHRAIYYGNIDCASLLLSKG-----RSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             cccchHhhHhhhhchHHHHHHHHhcC-----CceEEecccCCCHHHHHhhc
Confidence            47999999999999999999999874     56889999999999998863

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=94.85  E-value=0.022  Score=54.78  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=47.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++..|+.|+|+||-|+-.|+..+.++|++.     ++.+...|.+|+||-.-|-+.++.
T Consensus       927 ld~~de~get~lhkaa~~~~r~vc~~lvda-----gasl~ktd~kg~tp~eraqqa~d~  980 (1004)
T KOG0782|consen  927 LDMADETGETALHKAACQRNRAVCQLLVDA-----GASLRKTDSKGKTPQERAQQAGDP  980 (1004)
T ss_pred             HHHHhhhhhHHHHHHHHhcchHHHHHHHhc-----chhheecccCCCChHHHHHhcCCc
Confidence            467789999999999999999999999885     456889999999999999887764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=94.81  E-value=0.01  Score=61.23  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            9 GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         9 G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      =.|+|-.||..||.|++++|+.+     ++.+..+|+.|.+||-+|+-.||.
T Consensus       757 ~~t~LT~acaggh~e~vellv~r-----ganiehrdkkgf~plImaatagh~  803 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVR-----GANIEHRDKKGFVPLIMAATAGHI  803 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHh-----cccccccccccchhhhhhcccCch
Confidence            34555566666666666665554     233455556666666555555553

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=94.78  E-value=0.0049  Score=62.80  Aligned_cols=24  Identities=29%  Similarity=0.166  Sum_probs=20.7

Q ss_pred             cccccccCCCCcHHHHHHhcCCcc
Q 041061           38 KWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus        38 ~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ..++-+|.+|+||||+|+..|+.+
T Consensus       632 ~ai~i~D~~G~tpL~wAa~~G~e~  655 (975)
T KOG0520|consen  632 VAIDIRDRNGWTPLHWAAFRGREK  655 (975)
T ss_pred             cccccccCCCCcccchHhhcCHHH
Confidence            457899999999999999999754

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=93.88  E-value=0.032  Score=56.79  Aligned_cols=53  Identities=19%  Similarity=0.269  Sum_probs=47.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +|.+|..|+||||.+...|+......++++     ++..+.-|.+|.+||+.|....+
T Consensus       682 vn~~d~~g~~plh~~~~~g~~~~~~~ll~~-----~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  682 VNALDSKGRTPLHHATASGHTSIACLLLKR-----GADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             chhhhccCCCcchhhhhhcccchhhhhccc-----cccccccCccCcchhhHHhhhcc
Confidence            578899999999999999999999999886     45689999999999999986654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=93.51  E-value=0.061  Score=51.03  Aligned_cols=45  Identities=20%  Similarity=0.159  Sum_probs=39.1

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHH
Q 041061            6 NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVA   55 (283)
Q Consensus         6 D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa   55 (283)
                      |.---|+||+|+.+|..+++.++|+++     .+...+|..|.||..+++
T Consensus       427 ~~ltsT~LH~aa~qg~~k~v~~~Leeg-----~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  427 DYLTSTFLHYAAAQGARKCVKYFLEEG-----CDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccccchHHHHHHhcchHHHHHHHHHhc-----CCchhcccCCCCcccccc
Confidence            344579999999999999999999874     457899999999999988

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=93.06  E-value=0.13  Score=49.74  Aligned_cols=75  Identities=20%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCcccccc--cccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhccccccc
Q 041061           13 LHVAVRRRRHDIFQFIVEKMPLYVPKWAA--RIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPSHY   90 (283)
Q Consensus        13 LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn--~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~~~~   90 (283)
                      |--|+.......+.+|+.++.   ...+|  ..|.+|.|+||||+..|+..          +..-+.|+..        +
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~---~~e~~~t~~~~~grt~LHLa~~~gnVv----------l~QLLiWyg~--------d  686 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGS---REEVNETCGEGDGRTALHLAARKGNVV----------LAQLLIWYGV--------D  686 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccC---chhhhccccCCCCcchhhhhhhhcchh----------HHHHHHHhCc--------c
Confidence            445666666777777877653   22344  35778899999999998742          2334567753        2


Q ss_pred             ccccccccCCcccccccch
Q 041061           91 TMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        91 ~~~~n~~~G~T~~dl~~~~  109 (283)
                      ...++. +|.|++-.+++.
T Consensus       687 v~~rda-~g~t~l~yar~a  704 (749)
T KOG0705|consen  687 VMARDA-HGRTALFYARQA  704 (749)
T ss_pred             ceeccc-CCchhhhhHhhc
Confidence            345666 899987665443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=91.35  E-value=0.2  Score=46.15  Aligned_cols=46  Identities=20%  Similarity=0.104  Sum_probs=34.8

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061           13 LHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus        13 LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      |-.|++.|..+.+++|++.     +..+|++|...+.||.+|.-.||..++
T Consensus        40 lceacR~GD~d~v~~LVet-----gvnVN~vD~fD~spL~lAsLcGHe~vv   85 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVET-----GVNVNAVDRFDSSPLYLASLCGHEDVV   85 (516)
T ss_pred             HHHHhhcccHHHHHHHHHh-----CCCcchhhcccccHHHHHHHcCcHHHH
Confidence            6678888888888888775     345788888888888888888875543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=91.06  E-value=0.11  Score=53.98  Aligned_cols=58  Identities=17%  Similarity=0.106  Sum_probs=51.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI   64 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~   64 (283)
                      ++.+|++|.|+|-+|+..|+...+..|+++     ..+.+.+|+.-+|++.-|.++||++++.
T Consensus      1020 v~v~NkkG~T~Lwla~~Gg~lss~~il~~~-----~ad~d~qdnr~~S~~maafRKgh~~iVk 1077 (2131)
T KOG4369|consen 1020 VRVPNKKGCTVLWLASAGGALSSCPILVSS-----VADADQQDNRTNSRTMAAFRKGHFAIVK 1077 (2131)
T ss_pred             eecccCCCCcccchhccCCccccchHHhhc-----ccChhhhhcccccccHHHHHhchhheec
Confidence            467899999999999999999999999886     4568999999999999999999988763

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=90.37  E-value=0.38  Score=44.47  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=38.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +|.+|+-..+||.+|+.+||.+++++|++++.     ++..-.-+|.- -|+++-+..
T Consensus        62 VN~vD~fD~spL~lAsLcGHe~vvklLLenGA-----iC~rdtf~G~R-C~YgaLnd~  113 (516)
T KOG0511|consen   62 VNAVDRFDSSPLYLASLCGHEDVVKLLLENGA-----ICSRDTFDGDR-CHYGALNDR  113 (516)
T ss_pred             cchhhcccccHHHHHHHcCcHHHHHHHHHcCC-----cccccccCcch-hhhhhhhHH
Confidence            68899999999999999999999999999854     33333345544 355554443

>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=89.58  E-value=0.2  Score=42.28  Aligned_cols=51  Identities=24%  Similarity=0.332  Sum_probs=41.7

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHH-HHHhCCCCcccccccccCCCCcHHHHHHh
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQF-IVEKMPLYVPKWAARIDENGYTILHHVAD   56 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~-Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~   56 (283)
                      .|.+-++|||-|++-++.+++-+ +++... .....+|..|.+|..+|.+|-.
T Consensus       218 Id~kTe~~LHk~iki~REDVl~LYfie~da-kiP~~LNd~D~nG~~ALdiAL~  269 (280)
T KOG4591|consen  218 IDGKTENPLHKAIKIEREDVLFLYFIEMDA-KIPGILNDADHNGALALDIALC  269 (280)
T ss_pred             HcCCCcchhHHhhhccccceeeehhhhccc-cccccccccCCCchHHHHHHHH
Confidence            47788999999999999999854 555433 3567899999999999999974

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=86.27  E-value=0.51  Score=39.66  Aligned_cols=25  Identities=24%  Similarity=0.040  Sum_probs=21.8

Q ss_pred             cccccccCCCCcHHHHHHhcCCccc
Q 041061           38 KWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus        38 ~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ..+|.+|..|+|||..|+..|+.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~ea   27 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEA   27 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhH
Confidence            4589999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	283
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-04

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 1  MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARI---DENGYTILHHVADM 57
          M +  ++ G T LH+AV +        +V        +    +   +    T LH     
Sbjct: 1  MATRADEDGDTPLHIAVVQGNLPAVHRLVN----LFQQGGRELDIYNNLRQTPLHLAVIT 56

Query: 58 KHYE 61
              
Sbjct: 57 TLPS 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	283
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.43
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.38
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.38
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.35
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.34
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.33
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.32
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.27
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.24
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.23
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.23
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.23
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.22
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.2
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.19
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.19
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.17
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.15
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.15
2rfa_A	232	Transient receptor potential cation channel subfa	99.14
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.14
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.13
2rfa_A	232	Transient receptor potential cation channel subfa	99.12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.1
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.09
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.06
2etb_A	256	Transient receptor potential cation channel subfam	99.06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.05
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.04
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.03
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.03
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.03
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.03
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.03
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.03
2etb_A	256	Transient receptor potential cation channel subfam	99.03
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.03
2pnn_A	273	Transient receptor potential cation channel subfa	99.02
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.02
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.02
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.02
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.02
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.02
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.02
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.01
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.99
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.99
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.99
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.98
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.98
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.98
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.97
2pnn_A	273	Transient receptor potential cation channel subfa	98.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	98.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	98.95
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.95
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.89
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.86
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.85
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.8
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.77
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.76
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.74
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.37
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.14

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.43  E-value=1.2e-13  Score=113.33  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+..++.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..              ..
T Consensus        30 vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g-----ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~  104 (169)
T 4gpm_A           30 VNASDSDGRTPLHHAAENGHKEVVKLLISKG-----ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGR  104 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-----cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCC
Confidence            3456666666666666666666666666542     3466666666666666666665443210              12


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++..+...+..+.++.++.. ...+.+|+ +|+||.+++.+.
T Consensus       105 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~-~G~TpL~~A~~~  146 (169)
T 4gpm_A          105 TPLHHAAENGHKEVVKLLISKGADVNTSDS-DGRTPLDLAREH  146 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHc
Confidence            455555444444555544433 23456777 999999887554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.38  E-value=4.1e-13  Score=103.23  Aligned_cols=80  Identities=20%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +.+|.+|+||||+|+.+|+.+++++|+++     +..+|.+|.+|+||||+|+..++                   .+.+
T Consensus        34 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~d~~g~tpL~~A~~~~~-------------------~~~v   89 (123)
T 3aaa_C           34 NRTLEGGRKPLHYAADCGQLEILEFLLLK-----GADINAPDKHHITPLLSAVYEGH-------------------VSCV   89 (123)
T ss_dssp             TSCCTTSSCHHHHHHHTTCHHHHHHHHTT-----TCCTTCCCTTSCCHHHHHHHHTC-------------------HHHH
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCCcCCCCCCCHHHHHHHcCC-------------------HHHH
Confidence            44555666666666666666666666554     23355666666666666665554                   3333


Q ss_pred             hccccc-ccccccccccCCccccccc
Q 041061           83 KDIAPS-HYTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        83 ~~~~~~-~~~~~~n~~~G~T~~dl~~  107 (283)
                      +.++.. ...+.+|. +|.||.+++.
T Consensus        90 ~~Ll~~ga~~~~~~~-~g~t~l~~A~  114 (123)
T 3aaa_C           90 KLLLSKGADKTVKGP-DGLTAFEATD  114 (123)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHCC
T ss_pred             HHHHHcCCCCCCcCC-CCCCHHHHhC
Confidence            333222 23456677 8999988874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.38  E-value=5.2e-13  Score=104.48  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=75.7

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCCh
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPV   69 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~a   69 (283)
                      .+|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+..              ..++
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNG-----SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            46889999999999999999999999863     4588999999999999999888664321              2367


Q ss_pred             hhhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           70 YQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        70 l~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++.+...+..+.++.++.. ...+.+|. +|.||.+++.+.
T Consensus        80 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~  119 (137)
T 3c5r_A           80 LHDAAKNGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDDE  119 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCGGGGCCCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHhhc
Confidence            7776666656656555433 23456777 999999998654

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.35  E-value=1.4e-12  Score=104.98  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=77.7

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+
T Consensus        36 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  110 (165)
T 3twr_A           36 RDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-----ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFT  110 (165)
T ss_dssp             CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cccccCCCCHHHHHHHcChHHHHHHHHhcC-----CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCC
Confidence            567888999999999999999999999863     4589999999999999999888665321              236


Q ss_pred             hhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccchhh
Q 041061           69 VYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRTHE  111 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~~~  111 (283)
                      +++.+...+..+.++.++... ..+.+|. +|+||.+++.+.+.
T Consensus       111 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~a~~~~~  153 (165)
T 3twr_A          111 PLHEAAAKGKYEICKLLLQHGADPTKKNR-DGNTPLDLVKDGDT  153 (165)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCTGGGSCTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCChhHhHhcCCh
Confidence            777766666566565555432 3456677 99999999876443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.34  E-value=7.9e-13  Score=96.74  Aligned_cols=77  Identities=29%  Similarity=0.308  Sum_probs=57.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcccc
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAP   87 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~   87 (283)
                      +|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.                   ++.++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~n~~d~~g~t~L~~A~~~~~~~~-------------------v~~Ll~   56 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNGHLEV-------------------VKLLLE   56 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHH-------------------HHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcCCHHH-------------------HHHHHH
Confidence            5899999999999999999999863     4689999999999999999887432                   111111


Q ss_pred             -cccccccccccCCcccccccch
Q 041061           88 -SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        88 -~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                       ....+.+|. +|.||.+++.+.
T Consensus        57 ~ga~~~~~d~-~g~t~l~~A~~~   78 (93)
T 1n0q_A           57 AGADVNAKDK-NGRTPLHLAARN   78 (93)
T ss_dssp             TTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             cCCCCCccCC-CCCCHHHHHHHc
Confidence             123455677 899998876543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.33  E-value=1.3e-12  Score=114.76  Aligned_cols=99  Identities=14%  Similarity=0.048  Sum_probs=49.3

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChh
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVY   70 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al   70 (283)
                      +|.+|+||+|+|+..++.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+.+..              ..+++
T Consensus       115 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-----~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~L  189 (269)
T 4b93_B          115 RNADQAVPLHLACQQGHFQVVKCLLDSN-----AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTAL  189 (269)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             cCCCCCCccccccccChHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHH
Confidence            4444555555555555555555554432     2344455555555555554444333210              12334


Q ss_pred             hhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           71 QFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ..+...+..+.++.++.. ...+.+|+ +|+||.+++.+.
T Consensus       190 h~A~~~g~~~~v~~Ll~~Gad~~~~d~-~G~TpL~~A~~~  228 (269)
T 4b93_B          190 HEAVIEKHVFVVELLLLHGASVQVLNK-RQRTAVDCAEQN  228 (269)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCSGGGSCTT
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHhC
Confidence            443333334444444432 24567787 999999998653

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.33  E-value=2.4e-12  Score=105.30  Aligned_cols=103  Identities=14%  Similarity=0.100  Sum_probs=78.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~  106 (179)
T 3f6q_A           32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRG-----ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN  106 (179)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             ccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            4678899999999999999999999999863     4589999999999999999988665321              23


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccchh
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      ++++.+...+..+.++.++.. ...+.+|. +|+||.+++.+..
T Consensus       107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~~  149 (179)
T 3f6q_A          107 VPLHYACFWGQDQVAEDLVANGALVSICNK-YGEMPVDKAKAPL  149 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSSBCCT-TSCCGGGGSCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCcchhcc-CCCCcHHHHHHHH
Confidence            677777666656656555433 23456777 9999999986543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.32  E-value=1.3e-12  Score=104.13  Aligned_cols=100  Identities=16%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +.+|.+|+||||+ +.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+..              ..+
T Consensus        30 ~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  103 (156)
T 1bd8_A           30 DALNRFGKTALQV-MMFGSTAIALELLKQG-----ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGAL  103 (156)
T ss_dssp             TCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCC
T ss_pred             cccCCCCCcHHHH-HHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCc
Confidence            4456666677776 6666666666666642     3456666666677766666665443210              124


Q ss_pred             hhhhHHHhhhhhhhhcccccccccccccccCCcccccccch
Q 041061           69 VYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++.+...+..+.++.++.....+.+|. +|.||.+++.+.
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~g~t~l~~A~~~  143 (156)
T 1bd8_A          104 PIHLAVQEGHTAVVSFLAAESDLHRRDA-RGLTPLELALQR  143 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTSCTTCCCT-TSCCHHHHHHHS
T ss_pred             HHHHHHHhChHHHHHHHHhccCCCCcCC-CCCCHHHHHHHc
Confidence            5555444444444554444344556676 899998877543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.28  E-value=3.3e-12  Score=93.33  Aligned_cols=55  Identities=29%  Similarity=0.409  Sum_probs=49.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus        28 ~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~t~l~~A~~~~~~~   82 (93)
T 1n0q_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNGHLE   82 (93)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCCHH
Confidence            4678999999999999999999999999874     468999999999999999988744

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.27  E-value=4e-12  Score=99.45  Aligned_cols=82  Identities=21%  Similarity=0.188  Sum_probs=44.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++                   .+.+
T Consensus        41 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~~-------------------~~~v   96 (136)
T 2jab_A           41 NAKDEYGLTPLYLATAHGHLEIVEVLLKNG-----ADVNAVDAIGFTPLHLAAFIGH-------------------LEIA   96 (136)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHTC-------------------HHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCHHHHHHHcCC-------------------HHHH
Confidence            344555555555555555555555555542     2355555555555555555554                   2333


Q ss_pred             hccccc-ccccccccccCCcccccccch
Q 041061           83 KDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        83 ~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +.++.. ...+.+|. +|.||.+++.+.
T Consensus        97 ~~Ll~~g~~~~~~~~-~g~tpl~~A~~~  123 (136)
T 2jab_A           97 EVLLKHGADVNAQDK-FGKTAFDISIGN  123 (136)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHcCCCCcCcCC-CCCCHHHHHHHC
Confidence            333222 22345666 899998887543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.25  E-value=4.3e-12  Score=104.46  Aligned_cols=82  Identities=21%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+| .+|+||||+|+..++.+                   .
T Consensus        70 ~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~g~tpL~~A~~~~~~~-------------------~  125 (183)
T 3deo_A           70 DAVDENGRTALLFVAGLGSDKCVRLLAEAG-----ADLDHRDMRGGLTALHMAAGYVRPE-------------------V  125 (183)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCSSSSCCHHHHHHHTTCHH-------------------H
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcCCCCCCCCHHHHHHhcCcHH-------------------H
Confidence            456666777777777777777777776652     3466666 66777777777666532                   2


Q ss_pred             hhccccc-ccccccccccCCcccccccch
Q 041061           82 VKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        82 v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++.++.. ...+.+|. +|.||.+++.+.
T Consensus       126 v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~  153 (183)
T 3deo_A          126 VEALVELGADIEVEDE-RGLTALELAREI  153 (183)
T ss_dssp             HHHHHHHTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             HHHHHHcCCCCcCCCC-CCCCHHHHHHHh
Confidence            2222221 23455677 899998887553

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.25  E-value=9e-12  Score=100.44  Aligned_cols=102  Identities=13%  Similarity=0.094  Sum_probs=75.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-----ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGG  103 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCC
Confidence            4678899999999999999999999999863     4578899999999999999888665321              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++++.+...+..+.++.++... ....++. +|.||.+++.+.
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  145 (167)
T 3v31_A          104 TPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVAL  145 (167)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHc
Confidence            6677666555555555554332 3345666 899998887654

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.25  E-value=6e-12  Score=101.97  Aligned_cols=102  Identities=13%  Similarity=0.041  Sum_probs=77.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  103 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWG-----ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGG  103 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            4677999999999999999999999999874     4589999999999999999988665321              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++++.+...+..+.++.++..+ ..+.++. +|.||.+++.+.
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~  145 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTPMDLAVAL  145 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHh
Confidence            6677766655555565554332 3455666 899999887654

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.24  E-value=4e-12  Score=99.46  Aligned_cols=101  Identities=8%  Similarity=-0.014  Sum_probs=75.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc-------------CC--
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI-------------RP--   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~-------------~~--   66 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+. ++.+.+.             ..  
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAG-----ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcC-----CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            5778999999999999999999999999873     4589999999999999999 8765432             12  


Q ss_pred             CChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           67 GPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++++.+...+..+.++.++.. ...+.++. +|.||.+++.+.
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~  121 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQ  121 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSS-SSSCHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCCHHHHHHHc
Confidence            3667766665555555555433 23456666 899998876543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.24  E-value=5.7e-12  Score=109.44  Aligned_cols=104  Identities=13%  Similarity=0.020  Sum_probs=65.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccC-CCCcHHHHHHhcCCcccccC--------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDE-NGYTILHHVADMKHYEYGIR--------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~-~GnTpLHlAa~~~~~~~~~~--------------~   66 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|. +|+||||+|+..++.+.+..              .
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  225 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAG-----ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence            4667889999999999999999999999874     45888885 49999999999888665421              2


Q ss_pred             CChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccchhh
Q 041061           67 GPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRTHE  111 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~~~  111 (283)
                      .++++.+...+..+.++.++.. ...+.+|+ +|.||.+.+.+...
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPEDGG-DKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcCCC-cccccccccCCccc
Confidence            3677776655555555554433 23566777 89999998876543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.23  E-value=8.7e-12  Score=101.06  Aligned_cols=102  Identities=19%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        40 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  114 (169)
T 2y1l_E           40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-----ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH  114 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            3567889999999999999999999999863     4588899999999999999888654321              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++++.+...+..+.++.++... ..+.+|. +|.||.+++.+.
T Consensus       115 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  156 (169)
T 2y1l_E          115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDK-FGKTAFDISIDN  156 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHh
Confidence            5666665555455555444322 2345566 788888776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.23  E-value=1.4e-11  Score=103.79  Aligned_cols=100  Identities=17%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------PG   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~g   67 (283)
                      +.+|.+|+||||+|+.+|+.+++++|+++     +..+|.+|.+|+||||+|+..++.+.+..               ..
T Consensus       101 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~  175 (228)
T 2dzn_A          101 NKITNQGVTCLHLAVGKKWFEVSQFLIEN-----GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGW  175 (228)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSC
T ss_pred             ccCCcCCCCHHHHHHHcCCHhHHHHHHHc-----CCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCC
Confidence            34556666666666666666666666654     23466677777777777776665443210               12


Q ss_pred             ChhhhHHHhhhhhhhhccc-c-cccccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIA-P-SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~-~-~~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++++.+...+..+.++.++ . ....+.+|+ +|+||.+++.+
T Consensus       176 t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~-~g~t~l~~A~~  217 (228)
T 2dzn_A          176 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKAEDVALN  217 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCCSCCBCT-TSCBGGGGCSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHhcCCCCCccCC-CCCcHHHHHHH
Confidence            4555554444444455444 2 223455666 77888777654

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.23  E-value=8.3e-12  Score=99.88  Aligned_cols=100  Identities=18%  Similarity=0.146  Sum_probs=54.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +.+|.+|+||||+|+. |+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+
T Consensus        32 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  105 (162)
T 1ihb_A           32 NAQNGFGRTALQVMKL-GNPEIARRLLLRG-----ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNL  105 (162)
T ss_dssp             TCCCTTSCCHHHHCCS-SCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             cccCccCccHHHHHHc-CcHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            4456666666666666 6666666666542     3356666666666666666665443210              124


Q ss_pred             hhhhHHHhhhhhhhhccccccc--ccccccccCCcccccccch
Q 041061           69 VYQFQEELQWFECVKDIAPSHY--TMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~~--~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++.+...+..+.++.++....  .+.++. +|.||.+++.+.
T Consensus       106 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~l~~A~~~  147 (162)
T 1ihb_A          106 PLHLAAKEGHLRVVEFLVKHTASNVGHRNH-KGDTACDLARLY  147 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCCcCC-CCCcHHHHHHHc
Confidence            4444433333444444433222  245666 889998876543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.23  E-value=8.9e-12  Score=99.22  Aligned_cols=99  Identities=15%  Similarity=0.019  Sum_probs=68.3

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChh
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVY   70 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al   70 (283)
                      .|..|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+..              ..+++
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG-----VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            5778999999999999999999998763     4578899999999999998887654311              22556


Q ss_pred             hhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           71 QFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +.+...+..+.++.++..+ ..+.+|. +|.||.+++.+.
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~  143 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADVHTQSK-FCKTAFDISIDN  143 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCC-CCCCHHHHHHHc
Confidence            6555444444444443322 2345566 788887776543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.23  E-value=8.2e-12  Score=110.29  Aligned_cols=83  Identities=23%  Similarity=0.231  Sum_probs=65.5

Q ss_pred             cccccCCCChHHHHHHHh---CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhh
Q 041061            2 LSTVNQKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQW   78 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~   78 (283)
                      ++..|+.|+||||+|+.+   |+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.                
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-----a~in~~d~~g~TpLh~A~~~g~~~~----------------  220 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-----GNLDKQTGKGSTALHYCCLTDNAEC----------------  220 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-----SCTTCCCTTCCCHHHHHHHTTCHHH----------------
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCC-----CCccccCCCCCCHHHHHHHcCCHHH----------------
Confidence            456689999999999999   8999999999974     5699999999999999999887432                


Q ss_pred             hhhhhcccc-cccccccccccCCcccccccch
Q 041061           79 FECVKDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        79 ~~~v~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                         ++.++. ....+.+|+ +|+||.+++.+.
T Consensus       221 ---v~~Ll~~gad~~~~d~-~g~tpL~~A~~~  248 (278)
T 1dcq_A          221 ---LKLLLRGKASIEIANE-SGETPLDIAKRL  248 (278)
T ss_dssp             ---HHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             ---HHHHHHcCCCCCCccC-CCCCHHHHHHHc
Confidence               222221 123456777 999999987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.22  E-value=6.6e-12  Score=94.93  Aligned_cols=82  Identities=26%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      ...|.+|+|+||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.                   +
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~i~~~d~~g~tpLh~A~~~~~~~~-------------------v   73 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANG-----ADVAAKDKNGSTPLHLAARNGHLEV-------------------V   73 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHH-------------------H
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCCHHH-------------------H
Confidence            467899999999999999999999999863     4689999999999999999887432                   1


Q ss_pred             hcccc-cccccccccccCCcccccccch
Q 041061           83 KDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        83 ~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +.++. ....+.+|. +|.||.+++.+.
T Consensus        74 ~~Ll~~ga~~~~~d~-~g~tpl~~A~~~  100 (110)
T 2zgd_A           74 KLLLEAGADVXAQDK-FGKTAFDISIDN  100 (110)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             HHHHHcCCCcccccc-CCCcHHHHHHHc
Confidence            21111 123455666 899998887543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.22  E-value=1.6e-11  Score=101.32  Aligned_cols=54  Identities=19%  Similarity=0.104  Sum_probs=32.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus        29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~g~t~L~~A~~~~~~~   82 (192)
T 2rfm_A           29 NYRDSYNRTPLMVACMLGMENAIDKLVENF-----DKLEDKDIEGSTALIWAVKNNRLG   82 (192)
T ss_dssp             TCCCTTCCCHHHHHHHHTCGGGHHHHHHHH-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-----cccccccccCccHHHHHHHcCCHH
Confidence            455666666666666666666666666542     235556666666666666655544

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.21  E-value=1.1e-11  Score=103.11  Aligned_cols=102  Identities=15%  Similarity=0.071  Sum_probs=64.4

Q ss_pred             cccc-CCCChHHHHHHHhCC----HHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc------cc---C---
Q 041061            3 STVN-QKGQTILHVAVRRRR----HDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY------GI---R---   65 (283)
Q Consensus         3 e~~D-~~G~t~LH~Av~~g~----~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~------~~---~---   65 (283)
                      +.+| ..|+||||+|+.+|+    .+++++|+++     +..+|.+|.+|+||||+|+..++.+.      +.   .   
T Consensus        31 ~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-----Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga  105 (186)
T 3t8k_A           31 EDKESVLKSNILYDVLRNNNDEARYKISMFLINK-----GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA  105 (186)
T ss_dssp             SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-----TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC-----CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC
Confidence            3444 668888888888774    8888888886     34588888888888888887765321      10   0   


Q ss_pred             --------CC-ChhhhHHHhh-----hhhhhhcccc--cccccccccccCCcccccccchh
Q 041061           66 --------PG-PVYQFQEELQ-----WFECVKDIAP--SHYTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        66 --------~g-~al~l~~~l~-----~~~~v~~~~~--~~~~~~~n~~~G~T~~dl~~~~~  110 (283)
                              .. ++++.+....     ..+.++.++.  ....+.+|+ +|+||.+++.+..
T Consensus       106 din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~-~G~TpL~~A~~~~  165 (186)
T 3t8k_A          106 DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK-WGLTALEFVKRCQ  165 (186)
T ss_dssp             CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT-TSCCHHHHHHTTT
T ss_pred             CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC-CCCCHHHHHHHcC
Confidence                    22 4444433211     1122333333  345677888 9999999987654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.20  E-value=1.3e-11  Score=93.39  Aligned_cols=81  Identities=22%  Similarity=0.179  Sum_probs=62.0

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhh
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVK   83 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~   83 (283)
                      .+|++|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.                   ++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~~~~~-------------------~~   59 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG-----ADVNARSKDGNTPLHLAAKNGHAEI-------------------VK   59 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT-----CCSSCCCSSSCCTTHHHHTTTCHHH-------------------HH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcCcHHH-------------------HH
Confidence            47999999999999999999999998863     4589999999999999998887432                   22


Q ss_pred             ccccc-ccccccccccCCcccccccch
Q 041061           84 DIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        84 ~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++.. ...+.++. +|.||.+++...
T Consensus        60 ~Ll~~g~~~~~~d~-~g~tpl~~A~~~   85 (115)
T 2l6b_A           60 LLLAKGADVNARSK-DGNTPEHLAKKN   85 (115)
T ss_dssp             HHTTTTCCTTCCCT-TCCCTTHHHHTT
T ss_pred             HHHHcCCCCcccCC-CCCCHHHHHHHC
Confidence            22211 22345666 899998876543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.19  E-value=3.3e-11  Score=105.86  Aligned_cols=85  Identities=20%  Similarity=0.189  Sum_probs=65.7

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhc
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKD   84 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~   84 (283)
                      .|..|+||||+|+.+|+.+++++|++.     +..+|.+|.+|+||||+|+..|+.+.                   ++.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----g~d~~~~d~~g~tpL~~A~~~~~~~~-------------------v~~  250 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQA-----RYDVNIKDYDGWTPLHAAAHWGKEEA-------------------CRI  250 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTT-----TCCTTCCCTTCCCHHHHHHHTTCHHH-------------------HHH
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHc-----CCCCCCcCCCCCcHHHHHHhcCCHHH-------------------HHH
Confidence            567899999999999999999999986     35689999999999999999887432                   122


Q ss_pred             cccc-ccccccccccCCcccccccchhhhhH
Q 041061           85 IAPS-HYTMHRDTRKNMTAGDLFNRTHEDQL  114 (283)
Q Consensus        85 ~~~~-~~~~~~n~~~G~T~~dl~~~~~~~~~  114 (283)
                      ++.. ...+.+|. +|+||.+++.+...+..
T Consensus       251 Ll~~gad~~~~d~-~g~t~l~~A~~~~~~~l  280 (299)
T 1s70_B          251 LVENLCDMEAVNK-VGQTAFDVADEDILGYL  280 (299)
T ss_dssp             HHHTTCCTTCCCT-TSCCTTTSCCSGGGHHH
T ss_pred             HHHcCCCCCCcCC-CCCCHHHHHHHHHHHHH
Confidence            2211 23456777 99999999977554433

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.19  E-value=1.6e-11  Score=100.58  Aligned_cols=92  Identities=21%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChhhhHHHh
Q 041061           11 TILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVYQFQEEL   76 (283)
Q Consensus        11 t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al~l~~~l   76 (283)
                      +.|+.||++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+++..+...
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G-----advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG-----ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc
Confidence            4799999999999999999874     5699999999999999999888654321              23677777666


Q ss_pred             hhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           77 QWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        77 ~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      +..+.++.++... ..+.++. +|.||..++.+
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~-~G~TpLh~A~~  112 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDS-DGRTPLHHAAE  112 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CCHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHH
Confidence            6666666655432 3566777 89999877644

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.19  E-value=1.6e-11  Score=109.73  Aligned_cols=88  Identities=22%  Similarity=0.227  Sum_probs=53.9

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +.+|.+|+||||+|+++|+.+++++|+++     +..+|.+|.+|+||||+|+..++                   .+.+
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~n~~d~~g~t~L~~A~~~~~-------------------~~~v  296 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHNDVMEVLHKH-----GAKMNALDSLGQTALHRAALAGH-------------------LQTC  296 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHHTC-------------------HHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCCcCCCCCCHHHHHHHcCc-------------------HHHH
Confidence            44566666666666666666666666654     23466666666666666666665                   3333


Q ss_pred             hccccc-ccccccccccCCcccccccchhhhhHH
Q 041061           83 KDIAPS-HYTMHRDTRKNMTAGDLFNRTHEDQLK  115 (283)
Q Consensus        83 ~~~~~~-~~~~~~n~~~G~T~~dl~~~~~~~~~~  115 (283)
                      +.++.. .....+|+ +|.||.++..+...+...
T Consensus       297 ~~Ll~~gad~~~~~~-~g~tal~~a~~~~~~~l~  329 (351)
T 3utm_A          297 RLLLSYGSDPSIISL-QGFTAAQMGNEAVQQILS  329 (351)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCHHHHSCHHHHHHHH
T ss_pred             HHHHHcCCCCCCcCC-CCCChhhhhhHHHHHHHH
Confidence            333322 23456777 999999998665444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=107.67  Aligned_cols=82  Identities=23%  Similarity=0.161  Sum_probs=62.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +..|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+                   .+
T Consensus       177 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~g-----ad~n~~d~~G~TpLh~A~~~g~~~-------------------iv  232 (276)
T 4hbd_A          177 AKASQAGQTALMLAVSHGRVDVVKALLACE-----ADVNVQDDDGSTALMCACEHGHKE-------------------IA  232 (276)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHH-------------------HH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCCCCCCCCCHHHHHHHCCCHH-------------------HH
Confidence            456778999999999999999999998863     458899999999999999888743                   23


Q ss_pred             hcccc--cccccccccccCCcccccccch
Q 041061           83 KDIAP--SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        83 ~~~~~--~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +.++.  ....+.+|+ +|.||.+++.+.
T Consensus       233 ~~Ll~~~gad~~~~d~-~g~TpL~~A~~~  260 (276)
T 4hbd_A          233 GLLLAVPSCDISLTDR-DGSTALMVALDA  260 (276)
T ss_dssp             HHHHTSTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             HHHHhcCCCCCcCcCC-CCCCHHHHHHHc
Confidence            33332  223456777 999999887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.18  E-value=1.4e-11  Score=104.06  Aligned_cols=101  Identities=14%  Similarity=0.065  Sum_probs=69.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc----C-----------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI----R-----------PG   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~----~-----------~g   67 (283)
                      +..|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+.    .           ..
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~  141 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNR-----VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD  141 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSC
T ss_pred             cccccccccccccccccCcHHHHHHHHhCC-----CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCC
Confidence            456777888888888888888888888753     447788888888888888877755421    0           12


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++..+...+..+.++.++.. ...+.+|. +|.||.+++.+.
T Consensus       142 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~  183 (222)
T 3ehr_A          142 TALHAAAWKGYADIVQLLLAKGARTDLRNI-EKKLAFDMATNA  183 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSCCCCT-TSCCHHHHCCSH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCHHHHhcch
Confidence            566666555555555555433 23456777 999999987653

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.18  E-value=2e-11  Score=104.70  Aligned_cols=52  Identities=33%  Similarity=0.395  Sum_probs=36.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++
T Consensus        64 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~g~tpL~~A~~~~~  115 (239)
T 1ycs_B           64 SLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSDGWTPLHCAASCNN  115 (239)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCC
Confidence            456677777777777777777777777653     3467777777777777776665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.17  E-value=1.9e-11  Score=105.46  Aligned_cols=82  Identities=21%  Similarity=0.218  Sum_probs=51.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFE   80 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~   80 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+| .+|+||||+|+..++.+                   
T Consensus        70 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~g~t~L~~A~~~g~~~-------------------  125 (244)
T 3ui2_A           70 VDAVDENGRTALLFVAGLGSDKCVRLLAEAG-----ADLDHRDMRGGLTALHMAAGYVRPE-------------------  125 (244)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCSSSCCCHHHHHHHTTCHH-------------------
T ss_pred             CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCcCCCCCCCCHHHHHHHcCCHH-------------------
Confidence            3556677777777777777777777777653     3466666 66777777777766632                   


Q ss_pred             hhhccccc-ccccccccccCCcccccccc
Q 041061           81 CVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        81 ~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      .++.++.. ...+.+|+ +|.||.+++.+
T Consensus       126 ~v~~Ll~~ga~~~~~d~-~g~t~l~~A~~  153 (244)
T 3ui2_A          126 VVEALVELGADIEVEDE-RGLTALELARE  153 (244)
T ss_dssp             HHHHHHHTTCCTTCCCT-TCCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCC-CCCcHHHHHHH
Confidence            23322222 23445666 89999887754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.17  E-value=5.8e-11  Score=101.66  Aligned_cols=97  Identities=13%  Similarity=0.004  Sum_probs=51.6

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChh
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVY   70 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al   70 (283)
                      .+.+|.|+||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+++
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpL   91 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEM-----NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPL   91 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHS-----SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            3445556666666666666666666542     2355566666666666666555443210              12444


Q ss_pred             hhHHHhhhhhhhhcccccc-cccccccccCCcccccc
Q 041061           71 QFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLF  106 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~  106 (283)
                      ..+...+..+.++.++... ..+.+++.+|.||.+++
T Consensus        92 h~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  128 (229)
T 2vge_A           92 HCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC  128 (229)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHH
Confidence            4444444444444444332 23334322899999987

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.17  E-value=4.6e-11  Score=101.35  Aligned_cols=102  Identities=12%  Similarity=0.064  Sum_probs=60.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +..|..|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+
T Consensus       105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  179 (237)
T 3b7b_A          105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKG-----SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDS  179 (237)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence            345566666666666666666666666642     3466777777777777777666543210              235


Q ss_pred             hhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccchh
Q 041061           69 VYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      +++.+...+..+.++.++..+ ....+|+ +|+||.+++.+..
T Consensus       180 ~L~~A~~~~~~~~v~~Ll~~gad~~~~d~-~g~t~l~~A~~~~  221 (237)
T 3b7b_A          180 PLHIAARENRYDCVVLFLSRDSDVTLKNK-EGETPLQCASLNS  221 (237)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHSCTTC
T ss_pred             HHHHHHHhCCHhHHHHHHHcCCCCCccCC-CCCCHHHHHHHHH
Confidence            666655544444444444332 3445666 8888888776543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.15  E-value=3.6e-11  Score=101.62  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.+|..|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus        67 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A           67 NDKDDAGWSPLHIAASAGXDEIVKALLVKG-----AHVNAVNQNGCTPLHYAASKNRHE  120 (231)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCcCCCCCCHHHHHHHcCHHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            445666666666666666666666666542     235555566666666665555443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.15  E-value=2.4e-11  Score=104.88  Aligned_cols=53  Identities=23%  Similarity=0.256  Sum_probs=27.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++++.    ..++.+|.+|+||||+|+..++
T Consensus        84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~  136 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA----TDLDARMHDGTTPLILAARLAV  136 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT----SCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCccccCCCCCcHHHHHHHcCh
Confidence            3455566666666666666666666655432    1344444444444444444444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.15  E-value=2.1e-11  Score=100.65  Aligned_cols=101  Identities=21%  Similarity=0.072  Sum_probs=70.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        61 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  135 (192)
T 2rfm_A           61 LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-----SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE  135 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCC
T ss_pred             cccccccCccHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            4667899999999999999999999999874     4589999999999999999988654310              22


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++++.+...+..+.++.++..+ ..+.+|. +|.||.+++..
T Consensus       136 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~  176 (192)
T 2rfm_A          136 TPLIVASKYGRSEIVKKLLELGADISARDL-TGLTAEASARI  176 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCT-TSCBHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHH
Confidence            5555555444444444443321 2334454 66666666543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.14  E-value=3.8e-11  Score=101.66  Aligned_cols=106  Identities=16%  Similarity=0.043  Sum_probs=70.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc-----------------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI-----------------   64 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~-----------------   64 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++.+......+.+|.+|+||||+|+..++.+.+.                 
T Consensus        30 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~  109 (232)
T 2rfa_A           30 VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSV  109 (232)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc
Confidence            456788899999999999999999999887543112223677889999999999888765431                 


Q ss_pred             ----------CCCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           65 ----------RPGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        65 ----------~~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                                ...+++..+...+..+.++.++.. ...+.+|. +|.||.+++..
T Consensus       110 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~t~L~~A~~  163 (232)
T 2rfa_A          110 FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS-LGNTVLHILIL  163 (232)
T ss_dssp             GSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHT
T ss_pred             eeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHH
Confidence                      022556665555555555544432 23445566 78888777644

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.14  E-value=2.9e-11  Score=100.01  Aligned_cols=100  Identities=14%  Similarity=0.005  Sum_probs=69.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~   66 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..               .
T Consensus        32 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g  106 (201)
T 3hra_A           32 VDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-----ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYG  106 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCC
Confidence            4667889999999999999999999999863     4588899999999999998887654310               1


Q ss_pred             CChhhhHHHhhhhhhhhcccccc--cccccccccCCccccccc
Q 041061           67 GPVYQFQEELQWFECVKDIAPSH--YTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~~--~~~~~n~~~G~T~~dl~~  107 (283)
                      .+++..+...+..+.++.++...  ..+.++. +|.||..++.
T Consensus       107 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~  148 (201)
T 3hra_A          107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAV  148 (201)
T ss_dssp             CCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCT-TSCCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCC-CCCCHHHHHH
Confidence            24555554444444444444322  2345555 7777776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.14  E-value=2.6e-11  Score=109.14  Aligned_cols=53  Identities=19%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             ccc-ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            2 LST-VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         2 ie~-~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      ++. +|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+
T Consensus       123 vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-----ad~n~~d~~g~TpLh~A~~~g~  176 (327)
T 1sw6_A          123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-----SNRLYGDNMGESCLVKAVKSVN  176 (327)
T ss_dssp             SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHhcc
Confidence            345 7999999999999999999999999974     5689999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.13  E-value=2.9e-11  Score=102.64  Aligned_cols=105  Identities=16%  Similarity=0.064  Sum_probs=65.7

Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------C
Q 041061            1 MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------P   66 (283)
Q Consensus         1 ~ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~   66 (283)
                      |++.+|++|+||||+|+++|+.+++++|++.... .+..+|.+|.+|+||||+|+..|+.+.+..              .
T Consensus         1 l~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g   79 (241)
T 1k1a_A            1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG   79 (241)
T ss_dssp             ------CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHh-cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            6788999999999999999999999999872100 135689999999999999999998654321              1


Q ss_pred             CChhhhHHHhhhhhhhhcccccc-----cccccccccCCccccccc
Q 041061           67 GPVYQFQEELQWFECVKDIAPSH-----YTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~~-----~~~~~n~~~G~T~~dl~~  107 (283)
                      .+++..+...+..+.++.++...     ..+..+. +|.||...+.
T Consensus        80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~  124 (241)
T 1k1a_A           80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAV  124 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHH
Confidence            24555554444444443333221     2334444 6777766543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.13  E-value=3.5e-11  Score=97.39  Aligned_cols=79  Identities=16%  Similarity=0.062  Sum_probs=60.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  136 (172)
T 3v30_A           62 PHILAKERESALSLASTGGYTDIVGLLLERD-----VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY  136 (172)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             chhhcccCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Confidence            3567899999999999999999999999863     4589999999999999999988665321              23


Q ss_pred             ChhhhHHHhhhhhhhhcc
Q 041061           68 PVYQFQEELQWFECVKDI   85 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~   85 (283)
                      ++++.+...+..+.++.+
T Consensus       137 t~l~~A~~~~~~~~~~~L  154 (172)
T 3v30_A          137 TPMDLAVALGYRKVQQVI  154 (172)
T ss_dssp             CHHHHHHHHTCHHHHHHH
T ss_pred             CHHHHHHHhCcHHHHHHH
Confidence            667766655555544433

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.13  E-value=6.1e-11  Score=94.84  Aligned_cols=95  Identities=13%  Similarity=0.100  Sum_probs=41.9

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCc-HHHHHHhcCCcccccC--------------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYT-ILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnT-pLHlAa~~~~~~~~~~--------------~g   67 (283)
                      +.+|.+|+||||+|+ +|+.+++++|+++     +..+|.+|.+|+| |||+|+..++.+.+..              ..
T Consensus        39 ~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~-----g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~  112 (156)
T 1bi7_B           39 NAPNSYGRRPIQVMM-MGSARVAELLLLH-----GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGR  112 (156)
T ss_dssp             TCCCSSSCCTTTSSC-TTCHHHHHHHHTT-----TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCC
T ss_pred             CCCCCCCCCHHHHHH-cCCHHHHHHHHHc-----CCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCC
Confidence            445566666666653 5666666666654     2345666666666 6666666555443210              12


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGD  104 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~d  104 (283)
                      ++++.+...+..+.++.++..+ ....+|. .|.||.+
T Consensus       113 tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~~~  149 (156)
T 1bi7_B          113 LPVDLAEELGHRDVARYLRAAAGGTRGSNH-ARIDAAE  149 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHSSCC----------------
T ss_pred             CHHHHHHHhCHHHHHHHHHHcCCCCCccCc-CcCcccc
Confidence            4455444444444454444332 2345555 6777654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.13  E-value=5.2e-11  Score=90.62  Aligned_cols=96  Identities=24%  Similarity=0.223  Sum_probs=46.9

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChhhhH
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVYQFQ   73 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al~l~   73 (283)
                      +|+||||+|+++|+.+++++|++++     ..++.+|.+|+||||+|+..++.+.+..              ..+++..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC-----CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence            3555555555555555555555542     2345555555555555555554332210              11333333


Q ss_pred             HHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           74 EELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        74 ~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ...+..+.++.++.. .....+|. +|.||.+++.+.
T Consensus        76 ~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  111 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARN  111 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             HHcChHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHc
Confidence            332223333333222 12345566 889998876543

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.13  E-value=4.1e-11  Score=103.96  Aligned_cols=59  Identities=22%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CcccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            1 MLSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         1 ~ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +++.+|++|+||||+|+++|+.+++++|++.+..  ...+|.+|.+|+||||+|+..|+.+
T Consensus         1 i~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~~~g~t~L~~A~~~g~~~   59 (282)
T 1oy3_D            1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEAS   59 (282)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT--SGGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCCCCHHHHHHHcCCHH
Confidence            4688999999999999999999999999987442  2348999999999999999998844

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.12  E-value=4.2e-11  Score=101.43  Aligned_cols=53  Identities=19%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus       116 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A          116 NLIYYGEHPLSFAACVGSEEIVRLLIEHG-----ADIRAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             CSCCCCSSHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHTCSCHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCChH
Confidence            34668999999999999999999999863     568999999999999999988743

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.12  E-value=5.2e-11  Score=89.89  Aligned_cols=55  Identities=20%  Similarity=0.275  Sum_probs=49.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+
T Consensus        50 i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A~~~~~~~  104 (110)
T 2zgd_A           50 VAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-----ADVXAQDKFGKTAFDISIDNGNED  104 (110)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccccCCCcHHHHHHHcCCHH
Confidence            4678999999999999999999999999873     458999999999999999988743

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.12  E-value=1e-10  Score=99.27  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      +..|.+|+||||+|+.+|+.+++++|++.+     ..++.+| .+|+||||+|+..++.+.+..              ..
T Consensus       110 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (241)
T 1k1a_A          110 EARNYDGLTALHVAVNTECQETVQLLLERG-----ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS  184 (241)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSC
T ss_pred             cccCcCCCcHHHHHHHcCCHHHHHHHHHcC-----CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence            344566666666666666666666666542     3456666 667777777776666443210              22


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++++.+...+..+.++.++..+ ..+.+|. +|+||.+++.+.
T Consensus       185 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~  226 (241)
T 1k1a_A          185 SALHSASGRGLLPLVRTLVRSGADSSLKNC-HNDTPLMVARSR  226 (241)
T ss_dssp             BHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCTTTTCSSH
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCCCcCC-CCCCHHHHHHhc
Confidence            5555555444444444444322 2345666 788888887654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.10  E-value=9.1e-11  Score=98.57  Aligned_cols=54  Identities=22%  Similarity=0.235  Sum_probs=28.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      +.+|.+|+||||+|+.+|+.+++++|+++..    ..++.+|.+|+||||+|+..++.
T Consensus        52 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~t~L~~A~~~~~~  105 (223)
T 2f8y_A           52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRA----TDLDARMHDGTTPLILAARLAVE  105 (223)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT----SCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCcccCCCCCCcHHHHHHHhCcH
Confidence            3445556666666666666666666655422    13444555555555555554443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.09  E-value=1.6e-10  Score=98.29  Aligned_cols=107  Identities=13%  Similarity=0.008  Sum_probs=78.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCC-CcccccccccCCCCcHHHHHHhcCCccccc---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPL-YVPKWAARIDENGYTILHHVADMKHYEYGI---------------R   65 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~-~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~---------------~   65 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++.+.. .....++.+|.+|+||||+|+..++.+.+.               .
T Consensus        71 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  150 (236)
T 1ikn_D           71 PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN  150 (236)
T ss_dssp             SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            467889999999999999999999999987542 123457888999999999999888865431               1


Q ss_pred             CCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           66 PGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        66 ~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ..++++.+...+..+.++.++..+ ..+.+|. +|.||.+++.+.
T Consensus       151 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~tpl~~A~~~  194 (236)
T 1ikn_D          151 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTY-QGYSPYQLTWGR  194 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCT-TCCCGGGGCTTS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccC-CCCCHHHHHHcc
Confidence            236777776666666666555432 3456677 899999988654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.09  E-value=4.7e-11  Score=90.30  Aligned_cols=54  Identities=20%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     +..+|.+|.+|+||||+|+..++.
T Consensus        35 ~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~-----g~~~~~~d~~g~tpl~~A~~~~~~   88 (115)
T 2l6b_A           35 VNARSKDGNTPLHLAAKNGHAEIVKLLLAK-----GADVNARSKDGNTPEHLAKKNGHH   88 (115)
T ss_dssp             SSCCCSSSCCTTHHHHTTTCHHHHHHHTTT-----TCCTTCCCTTCCCTTHHHHTTTCH
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-----CCCCcccCCCCCCHHHHHHHCCCH
Confidence            467899999999999999999999999886     346899999999999999988874

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.07  E-value=9.9e-11  Score=103.10  Aligned_cols=99  Identities=8%  Similarity=-0.076  Sum_probs=65.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +..|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+.+..              ..+
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  127 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQG-----WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT  127 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            457889999999999999999999999863     4588999999999999999888654311              124


Q ss_pred             hhhhHHHhhhhhhhhcccccccccccccccCCccccccc
Q 041061           69 VYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~  107 (283)
                      ++..+...+..+.++.++........++ +|.||..++.
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~  165 (285)
T 3d9h_A          128 PLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA  165 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH
Confidence            5555544444444444333222112233 5666655543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.06  E-value=1.6e-10  Score=107.29  Aligned_cols=101  Identities=13%  Similarity=0.074  Sum_probs=59.7

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +..|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..+
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  346 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-----VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYS  346 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCC-----ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCC
Confidence            344566666666666666666666666552     3467777777777777777776554311              225


Q ss_pred             hhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           69 VYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++.+...+..+.++.++..+ ..+.+|. +|+||.+++.+.
T Consensus       347 ~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~-~g~t~l~~A~~~  387 (437)
T 1n11_A          347 PLHQAAQQGHTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRL  387 (437)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCS-SSCCHHHHHHHT
T ss_pred             HHHHHHHCChHHHHHHHHHCcCCCCCCCC-CCCCHHHHHHHc
Confidence            666655555555555444322 3345566 788888776544

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.06  E-value=1.3e-10  Score=100.12  Aligned_cols=80  Identities=18%  Similarity=0.119  Sum_probs=61.3

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCC-------------CCcHHHHHHhcCCcccccCCCChh
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDEN-------------GYTILHHVADMKHYEYGIRPGPVY   70 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~-------------GnTpLHlAa~~~~~~~~~~~g~al   70 (283)
                      ..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+             |+||||+|+..++.+.        
T Consensus        85 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~--------  151 (256)
T 2etb_A           85 DEFYQGHSALHIAIEKRSLQCVKLLVENG-----ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV--------  151 (256)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHH--------
T ss_pred             cccccCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCcccccccccccccccccCCCCHHHHHHHcCCHHH--------
Confidence            45678999999999999999999999974     457888876             9999999999887432        


Q ss_pred             hhHHHhhhhhhhhcccc----cccccccccccCCcccccccc
Q 041061           71 QFQEELQWFECVKDIAP----SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~~~----~~~~~~~n~~~G~T~~dl~~~  108 (283)
                                 ++.++.    ....+.++. +|.||..++..
T Consensus       152 -----------v~~Ll~~~~~ga~~n~~d~-~g~TpLh~A~~  181 (256)
T 2etb_A          152 -----------VTYLLENPHQPASLEATDS-LGNTVLHALVM  181 (256)
T ss_dssp             -----------HHHHHHCSSCCCCTTCCCT-TSCCHHHHHHH
T ss_pred             -----------HHHHHhccccCCCcCccCC-CCCCHHHHHHH
Confidence                       222222    223456777 99999987754

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.06  E-value=9.3e-11  Score=101.11  Aligned_cols=81  Identities=22%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc--------------CCCCcHHHHHHhcCCcccccCCCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID--------------ENGYTILHHVADMKHYEYGIRPGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D--------------~~GnTpLHlAa~~~~~~~~~~~g~   68 (283)
                      +..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|              .+|+||||+|+..|+.+.      
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~------  155 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKG-----ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI------  155 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH------
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCC-----CCcCccccccccCcccccccccCCCCHHHHHHHcCCHHH------
Confidence            345669999999999999999999999974     4578887              689999999999887432      


Q ss_pred             hhhhHHHhhhhhhhhcccc----cccccccccccCCcccccccc
Q 041061           69 VYQFQEELQWFECVKDIAP----SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~----~~~~~~~n~~~G~T~~dl~~~  108 (283)
                                   ++.++.    ....+.+|. +|.||..++.+
T Consensus       156 -------------v~~Ll~~~~~ga~~~~~d~-~g~TpLh~A~~  185 (260)
T 3jxi_A          156 -------------VHYLTENGHKQADLRRQDS-RGNTVLHALVA  185 (260)
T ss_dssp             -------------HHHHHHCSSCCCCTTCCCT-TSCCHHHHHHH
T ss_pred             -------------HHHHHhccccCCCCcccCC-CCCcHHHHHHH
Confidence                         222222    223456777 99999988764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.05  E-value=1.7e-10  Score=97.51  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=72.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++..|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  107 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG-----VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC  107 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-----CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCC
Confidence            3567899999999999999999999999863     4588999999999999999988665321              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      +++..+......+.++.++... ..+.++. +|.||...+.+
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~A~~  148 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAA  148 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHH
Confidence            5666665555455444443322 2344555 78888766543

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.05  E-value=1.5e-10  Score=95.69  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=70.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~   66 (283)
                      ++.+|..|+||||+|+.+|+.+++++|+++.    +..++.+|.+|+||||+|+..++.+.+..               .
T Consensus        65 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  140 (201)
T 3hra_A           65 INLQNSISDSPYLYAGAQGRTEILAYMLKHA----TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFG  140 (201)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS----CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTS
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc----CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCC
Confidence            3567888999999999999999999998653    34678889999999999998887654321               2


Q ss_pred             CChhhhHHHhhh-----hhhhhccccc-ccccccccccCCcccccccch
Q 041061           67 GPVYQFQEELQW-----FECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        67 g~al~l~~~l~~-----~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++++.+.....     .+.++.++.. ...+.++. +|.||.+++.+.
T Consensus       141 ~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~  188 (201)
T 3hra_A          141 YTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN-SGRTAMDYANQK  188 (201)
T ss_dssp             CCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHHH
T ss_pred             CCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCC-CCCCHHHHHHHc
Confidence            256655543322     3334443332 23456677 899999887554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.04  E-value=1.3e-10  Score=103.79  Aligned_cols=80  Identities=19%  Similarity=0.204  Sum_probs=62.5

Q ss_pred             ccCCCChHHHHHHHh---CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            5 VNQKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      .|.+|+||||+|+..   |+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.                   
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-----advn~~d~~G~TpLh~A~~~g~~~~-------------------  241 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNG-----GHLDAKAADGNTALHYAALYNQPDC-------------------  241 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-----SCTTCCCTTCCCHHHHHHHTTCHHH-------------------
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcC-----CCCCCCCCCCCCHHHHHHHcCCHHH-------------------
Confidence            688999999999997   8999999999974     4689999999999999999887432                   


Q ss_pred             hhcccc-cccccccccccCCcccccccch
Q 041061           82 VKDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        82 v~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++.++. ....+.+|. +|+||.+++.+.
T Consensus       242 v~~Ll~~gad~~~~d~-~G~TpL~~A~~~  269 (301)
T 2b0o_E          242 LKLLLKGRALVGTVNE-AGETALDIARKK  269 (301)
T ss_dssp             HHHHHHTTCCCSCCCT-TSCCHHHHHHHH
T ss_pred             HHHHHHcCCCCCCcCC-CCCCHHHHHHHc
Confidence            222221 123456777 899999887654

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.04  E-value=1.5e-10  Score=90.24  Aligned_cols=56  Identities=16%  Similarity=0.211  Sum_probs=50.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.
T Consensus        36 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~   91 (137)
T 3c5r_A           36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHK-----ALVNTTGYQNDSPLHDAAKNGHVDI   91 (137)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CcccCcCCCCCCHHHHHHHcCCHHH
Confidence            4668899999999999999999999999863     4689999999999999999988654

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.04  E-value=1.6e-10  Score=88.46  Aligned_cols=79  Identities=18%  Similarity=0.025  Sum_probs=58.0

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhc
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKD   84 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~   84 (283)
                      .+..|+|+||+|+++|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.                   ++.
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~-----~~~~~~~~~g~t~L~~A~~~~~~~~-------------------v~~   58 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-----EDVNRTLEGGRKPLHYAADCGQLEI-------------------LEF   58 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTT-----CCTTSCCTTSSCHHHHHHHTTCHHH-------------------HHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcC-----CCcCccCCCCCcHHHHHHHcCCHHH-------------------HHH
Confidence            4678999999999999999999999864     4589999999999999999887432                   222


Q ss_pred             ccc-cccccccccccCCcccccccc
Q 041061           85 IAP-SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        85 ~~~-~~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++. ....+.+|. +|.||..++..
T Consensus        59 Ll~~g~~~~~~d~-~g~tpL~~A~~   82 (123)
T 3aaa_C           59 LLLKGADINAPDK-HHITPLLSAVY   82 (123)
T ss_dssp             HHTTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             HHHcCCCCCcCCC-CCCCHHHHHHH
Confidence            221 123455666 89999887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.04  E-value=1.8e-10  Score=103.56  Aligned_cols=87  Identities=15%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             cccccCCCChHHHHHHH----hCCHHHHHHHHHhCCC---------------Cccc------------------------
Q 041061            2 LSTVNQKGQTILHVAVR----RRRHDIFQFIVEKMPL---------------YVPK------------------------   38 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~----~g~~~iv~~Ll~~~~~---------------~~~~------------------------   38 (283)
                      ++.+|.+|+||||+|++    .|+.+++++|++....               ..+.                        
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~  273 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  273 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence            46789999999999999    8999999999875210               0011                        


Q ss_pred             -ccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           39 -WAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        39 -~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                       .+|.+|.+|+||||+|+..|+.+                   .++.++.. ...+.+|+ +|+||.+++.+
T Consensus       274 ~~~n~~d~~G~TpLh~A~~~g~~~-------------------~v~~Ll~~Gad~~~~d~-~G~TpL~~A~~  325 (327)
T 1sw6_A          274 NMLNAQDSNGDTCLNIAARLGNIS-------------------IVDALLDYGADPFIANK-SGLRPVDFGAG  325 (327)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHH-------------------HHHHHHHTTCCTTCCCT-TSCCGGGGTCC
T ss_pred             hCCCCCCCCCCCHHHHHHHcCCHH-------------------HHHHHHHcCCCCcccCC-CCCCHHHHHHh
Confidence             36777888888888888777632                   23333322 23567777 99999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.04  E-value=8.5e-11  Score=99.28  Aligned_cols=56  Identities=20%  Similarity=0.178  Sum_probs=49.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++..    +..+|.+|.+|+||||+|+..|+.+
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~----g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQP----NIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTST----TCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCC----CCCccccCCCCCCHHHHHHHcCCHH
Confidence            4678999999999999999999999998762    3568999999999999999998854

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.04  E-value=1.7e-10  Score=104.61  Aligned_cols=101  Identities=16%  Similarity=0.103  Sum_probs=70.8

Q ss_pred             ccccCCCChHHHHHHHhC--CHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc-------------C--
Q 041061            3 STVNQKGQTILHVAVRRR--RHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI-------------R--   65 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g--~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~-------------~--   65 (283)
                      +..|.+|+||||+|+.+|  +.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+.             .  
T Consensus       132 ~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g-----a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~  206 (364)
T 3ljn_A          132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLG-----ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY  206 (364)
T ss_dssp             EEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTC
T ss_pred             ccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccc
Confidence            457788888888888888  888888888863     457888888888888888888755421             0  


Q ss_pred             ----CCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           66 ----PGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        66 ----~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                          ..++++.+...+..+.++.++..+ ..+.+|+ +|.||.+++.+.
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~-~g~tpL~~A~~~  254 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRA  254 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHHh
Confidence                225666665555555555555432 3456677 899998887554

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.03  E-value=1.8e-10  Score=91.51  Aligned_cols=94  Identities=16%  Similarity=0.042  Sum_probs=67.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChhhhH
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVYQFQ   73 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al~l~   73 (283)
                      ++.|+||.|+++|+.+++++|++++.     .++ .|.+|+||||+|+..++.+.+..              ..+++..+
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~-----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   74 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGA-----PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMA   74 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTC-----CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCC-----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            35799999999999999999999754     233 69999999999999998664321              23567666


Q ss_pred             HHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           74 EELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        74 ~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      ...+..+.++.++... ..+.++. +|.||.+++.+
T Consensus        75 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~  109 (153)
T 1awc_B           75 ASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATE  109 (153)
T ss_dssp             HHHTCHHHHHHHHTTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             HHcChHHHHHHHHHcCCCCCCCCC-CCCCHHHHHHH
Confidence            6555555555554432 3445666 88999877654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.03  E-value=2e-10  Score=102.53  Aligned_cols=101  Identities=17%  Similarity=0.121  Sum_probs=74.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..              ..
T Consensus        51 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~  125 (351)
T 3utm_A           51 CHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-----ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQF  125 (351)
T ss_dssp             CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            4567899999999999999999999999873     4589999999999999999998765321              22


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++++.+...+..+.++.++... .....+. +|.||.++...
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~~~l~~a~~  166 (351)
T 3utm_A          126 TPLHEAASKNRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPT  166 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCSS
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCcchHHHhh
Confidence            6676666555555555554332 2344555 78888776543

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.03  E-value=5.9e-11  Score=94.89  Aligned_cols=100  Identities=11%  Similarity=-0.002  Sum_probs=71.8

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGP   68 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~   68 (283)
                      +..++.|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+ .++.+.+..              ..+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~t   79 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAG-----ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLT   79 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCc
Confidence            456889999999999999999999999863     468999999999999985 676554310              235


Q ss_pred             -hhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           69 -VYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        69 -al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                       +++.+...+..+.++.++..+ ..+.++. +|.||.+++.+.
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~-~g~tpl~~A~~~  121 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEEL  121 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHHh
Confidence             787776666666666555432 3456666 899998877543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.03  E-value=2.2e-10  Score=97.13  Aligned_cols=100  Identities=17%  Similarity=0.119  Sum_probs=71.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~   78 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAG-----ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS   78 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSC
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcC-----CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            3678999999999999999999999999874     4588999999999999999988654321              12


Q ss_pred             ChhhhHHHhhhhhhhhcccccc--cccccccccCCccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH--YTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~--~~~~~n~~~G~T~~dl~~  107 (283)
                      +++..+...+..+.++.++...  ..+..+. +|.||...+.
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~  119 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWAT  119 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHH
Confidence            4565555544455555544332  2334455 7788776554

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.03  E-value=2e-10  Score=99.05  Aligned_cols=100  Identities=21%  Similarity=0.125  Sum_probs=72.0

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------PG   67 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~g   67 (283)
                      +..|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..               ..
T Consensus        51 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~  125 (253)
T 1yyh_A           51 NQTDRTGETALHLAARYSRSDAAKRLLEAS-----ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT  125 (253)
T ss_dssp             -CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence            346899999999999999999999999863     4589999999999999999888654311               23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      +++..+...+..+.++.++... ..+.++. +|.||..++.+
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~  166 (253)
T 1yyh_A          126 TPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAA  166 (253)
T ss_dssp             CHHHHHHHHTCSSHHHHHHHTTCCTTCBCT-TSCBHHHHHHH
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHH
Confidence            5666665555445555444322 2345555 78888777644

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.03  E-value=1.6e-10  Score=101.76  Aligned_cols=102  Identities=11%  Similarity=0.019  Sum_probs=76.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC-------------CCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR-------------PGP   68 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~-------------~g~   68 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..             ..+
T Consensus        85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t  159 (285)
T 3d9h_A           85 VNIITADHVSPLHEACLGGHLSCVKILLKHG-----AQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLAS  159 (285)
T ss_dssp             SCEECTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSC
T ss_pred             CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCC
Confidence            4678999999999999999999999999863     5689999999999999999998665321             236


Q ss_pred             hhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           69 VYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++..+...+..+.++.++... ..+.++. +|.||..++.+.
T Consensus       160 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~-~g~t~L~~A~~~  200 (285)
T 3d9h_A          160 PIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACEN  200 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCBT-TTBCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCC-CCCCHHHHHHHc
Confidence            676666555555555554332 3455666 899998776543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.03  E-value=1.4e-10  Score=99.82  Aligned_cols=49  Identities=22%  Similarity=0.352  Sum_probs=42.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcC
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMK   58 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~   58 (283)
                      .|+||||+|+.+|+.+++++|+++..  .+..+|.+|.+|+||||+|+..+
T Consensus       135 ~g~tpL~~A~~~~~~~~v~~Ll~~~~--~ga~~n~~d~~g~TpLh~A~~~~  183 (256)
T 2etb_A          135 FGELPLSLAACTKQWDVVTYLLENPH--QPASLEATDSLGNTVLHALVMIA  183 (256)
T ss_dssp             SCSSHHHHHHHTTCHHHHHHHHHCSS--CCCCTTCCCTTSCCHHHHHHHHC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccc--cCCCcCccCCCCCCHHHHHHHcc
Confidence            39999999999999999999999311  14569999999999999999833

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.03  E-value=1.7e-10  Score=109.81  Aligned_cols=52  Identities=21%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             cCCCChHHHHHHH---hCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            6 NQKGQTILHVAVR---RRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         6 D~~G~t~LH~Av~---~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      |.+|+||||+||.   +|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.
T Consensus       168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-----a~vn~~d~~g~TpLh~A~~~g~~~~  222 (497)
T 3lvq_E          168 QAPEELVLHLAVKVANQASLPLVDFIIQNG-----GHLDAKAADGNTALHYAALYNQPDC  222 (497)
T ss_dssp             CCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-----CCTTCCCSSSCCHHHHHTTTTCHHH
T ss_pred             ccccchHHHHHHHhcccccHHHHHHHHHcC-----CCCCccCCCCCcHHHHHHHcCCHHH
Confidence            8899999999977   89999999999974     5699999999999999999988543

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.02  E-value=2e-10  Score=99.88  Aligned_cols=79  Identities=24%  Similarity=0.189  Sum_probs=61.4

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccC--------------CCCcHHHHHHhcCCcccccCCCChh
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDE--------------NGYTILHHVADMKHYEYGIRPGPVY   70 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~--------------~GnTpLHlAa~~~~~~~~~~~g~al   70 (283)
                      .|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.              +|+||||+|+..++.+.        
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-----a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~--------  163 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENG-----ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI--------  163 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH--------
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCcCccccccccccccccccccCCCCHHHHHHHcCCHHH--------
Confidence            6779999999999999999999999974     45777776              89999999999887432        


Q ss_pred             hhHHHhhhhhhhhcccc----cccccccccccCCcccccccc
Q 041061           71 QFQEELQWFECVKDIAP----SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~~~----~~~~~~~n~~~G~T~~dl~~~  108 (283)
                                 ++.++.    ....+.++. +|.||..++.+
T Consensus       164 -----------v~~Ll~~~~~gad~~~~d~-~g~tpLh~A~~  193 (273)
T 2pnn_A          164 -----------VKFLLQNSWQPADISARDS-VGNTVLHALVE  193 (273)
T ss_dssp             -----------HHHHHHCSSCCCCTTCCCT-TSCCHHHHHHH
T ss_pred             -----------HHHHHhcccCCCCceeeCC-CCCcHHHHHHH
Confidence                       222222    223456777 99999988754

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.02  E-value=1.6e-10  Score=101.27  Aligned_cols=100  Identities=17%  Similarity=0.114  Sum_probs=70.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|++|+||||+|+.+|+.+++++|++.+     ..++.+|.+|+||+|.|+..++.+.+..              ..
T Consensus        79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~-----a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~  153 (269)
T 4b93_B           79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHG-----ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGN  153 (269)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC-----CCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCC
Confidence            4677889999999999999999999998863     4578889999999999998887554210              23


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFN  107 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~  107 (283)
                      +++..+...+..+.++.++.. ...+.++. +|.||..++.
T Consensus       154 TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~-~g~t~Lh~A~  193 (269)
T 4b93_B          154 TPLIYACSGGHHELVALLLQHGASINASNN-KGNTALHEAV  193 (269)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCTTCBCT-TSCBHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCcccc-CCCcHHHHHH
Confidence            566666555555555554432 23445565 7888876654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.02  E-value=2.4e-10  Score=100.27  Aligned_cols=96  Identities=8%  Similarity=0.005  Sum_probs=45.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChhhhH
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVYQFQ   73 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al~l~   73 (283)
                      +|.|+||.|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..              ..++++.+
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERG-----ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAA  113 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC-----CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence            4445555555555555555554432     2244445555555555554444332210              11334333


Q ss_pred             HHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           74 EELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        74 ~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ...+..+.++.++.. ......+. +|.||.+++...
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  149 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHVGAVNS-EGDTPLDIAEEE  149 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHCCSH
T ss_pred             HHcCCHHHHHHHHhCCCCCCCcCC-CCCCHHHHHHhc
Confidence            333334444443332 22345666 899998877543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.02  E-value=2.5e-10  Score=89.06  Aligned_cols=55  Identities=18%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..++.+|.+|+||||+|+..++.+
T Consensus        73 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~tpl~~A~~~~~~~  127 (136)
T 2jab_A           73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-----ADVNAQDKFGKTAFDISIGNGNED  127 (136)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCcCcCCCCCCHHHHHHHCCCHH
Confidence            4678999999999999999999999999863     458999999999999999988743

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.02  E-value=9.2e-11  Score=97.41  Aligned_cols=93  Identities=11%  Similarity=-0.132  Sum_probs=63.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc-CCCCcHHHHHHhcCCcc----ccc--------------CCCC
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID-ENGYTILHHVADMKHYE----YGI--------------RPGP   68 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D-~~GnTpLHlAa~~~~~~----~~~--------------~~g~   68 (283)
                      .+.++||.|++.|+.+.++.+++..       +|.+| .+|+||||+|+.+++.+    .+.              ...+
T Consensus         5 ~~~~~l~~Aa~~g~~~~~~~l~~~~-------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~T   77 (186)
T 3t8k_A            5 SEYRTVSAAAMLGTYEDFLELFEKG-------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTT   77 (186)
T ss_dssp             HHCSSHHHHHHHSCHHHHHHHHHHS-------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred             ccccHHHHHHHcCCHHHHHHHHhcC-------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            3678999999999999999987753       45566 88999999999988643    211              0236


Q ss_pred             hhhhHHHhhh------hhhhhccccc-ccccccccccCC-cccccccc
Q 041061           69 VYQFQEELQW------FECVKDIAPS-HYTMHRDTRKNM-TAGDLFNR  108 (283)
Q Consensus        69 al~l~~~l~~------~~~v~~~~~~-~~~~~~n~~~G~-T~~dl~~~  108 (283)
                      +++.+.....      .+.++.++.. ...+.+++ +|. ||...+..
T Consensus        78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-~g~ttpLh~A~~  124 (186)
T 3t8k_A           78 LFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIFN  124 (186)
T ss_dssp             THHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG-GGTBCTTGGGGG
T ss_pred             HHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC-CcCchHHHHHHH
Confidence            7766543322      2234444332 34567777 899 99887755

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.02  E-value=2.4e-10  Score=89.15  Aligned_cols=55  Identities=11%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCC-CCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDEN-GYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~-GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+|+||||+|+. |+.+++++|++++     ..+|.+|.+ |+||||+|+..++.+.
T Consensus        38 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-----~~~~~~~~~~g~t~L~~A~~~~~~~~   93 (136)
T 1d9s_A           38 PNALNRFGRRPIQVMMM-GSAQVAELLLLHG-----AEPNCADPATLTRPVHDAAREGFLDT   93 (136)
T ss_dssp             TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT-----CCSSCCBTTTTBCHHHHHHHHTCHHH
T ss_pred             cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC-----CCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            35567778888888888 8888888887763     347777777 7888888887776554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.02  E-value=1.7e-10  Score=99.46  Aligned_cols=51  Identities=22%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .+|+||||+|+.+|+.+++++|++.+.  .+..+|.+|.+|+||||+|+..++
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~ga~~~~~d~~g~TpLh~A~~~~~  188 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGH--KQADLRRQDSRGNTVLHALVAIAD  188 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSS--CCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccc--cCCCCcccCCCCCcHHHHHHHhcc
Confidence            689999999999999999999999321  145699999999999999998765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.01  E-value=2.3e-10  Score=100.86  Aligned_cols=55  Identities=22%  Similarity=0.274  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     ++.+|.+|.+|+||||+|+..++.+
T Consensus       198 in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-----gad~~~~d~~g~tpL~~A~~~~~~~  252 (278)
T 1dcq_A          198 LDKQTGKGSTALHYCCLTDNAECLKLLLRG-----KASIEIANESGETPLDIAKRLKHEH  252 (278)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCCCCccCCCCCHHHHHHHcCCHH
Confidence            567899999999999999999999999986     4569999999999999999988743

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.00  E-value=1.4e-10  Score=101.77  Aligned_cols=102  Identities=15%  Similarity=0.117  Sum_probs=74.0

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhc-----CCccccc------------
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADM-----KHYEYGI------------   64 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~-----~~~~~~~------------   64 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++.+.    ..+|.+|.+|.||||+|+..     ++.+.+.            
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~  179 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGV----CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKA  179 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC----CCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC----CcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcccc
Confidence            57789999999999999999999999999743    26899999999999999943     2221110            


Q ss_pred             --CCCChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           65 --RPGPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        65 --~~g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                        ...+++..+...+..+.++.++..+ ..+.+|. +|.||..++.+
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~-~G~TpLh~A~~  225 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACE  225 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHH
Confidence              1236777776666566666555432 3456677 89999887644

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.99  E-value=3.4e-10  Score=95.24  Aligned_cols=56  Identities=27%  Similarity=0.399  Sum_probs=37.9

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccc-ccCCCCcHHHHHHhcCCccc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAAR-IDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~-~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .+|.+|+||||+|+.+|+.+++++|++++.   ...++. +|.+|+||||+|+..++.+.
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~   87 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKME---NVNLDDYPDDSGWTPFHIACSVGNLEV   87 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCT---TCCGGGCCCTTSCCHHHHHHHHCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccc---cccccccCCCCCCCHHHHHHHcCCHHH
Confidence            467777777777777777777777777642   123444 67777777777777666443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.99  E-value=3.1e-10  Score=101.29  Aligned_cols=54  Identities=22%  Similarity=0.324  Sum_probs=49.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++.     ++.+|.+|.+|+||||+|+..++.
T Consensus       219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-----gad~~~~d~~G~TpL~~A~~~~~~  272 (301)
T 2b0o_E          219 LDAKAADGNTALHYAALYNQPDCLKLLLKG-----RALVGTVNEAGETALDIARKKHHK  272 (301)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCCSCCCTTSCCHHHHHHHHTCH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCCH
Confidence            467899999999999999999999999986     356899999999999999998874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.99  E-value=4.7e-10  Score=90.70  Aligned_cols=57  Identities=25%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+
T Consensus        73 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v  129 (169)
T 2y1l_E           73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNG-----ADVNANDMEGHTPLHLAAMFGHLEIV  129 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            4567899999999999999999999999864     45899999999999999999886543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.98  E-value=2.8e-10  Score=90.40  Aligned_cols=95  Identities=9%  Similarity=0.007  Sum_probs=69.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CCChhhhH
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PGPVYQFQ   73 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g~al~l~   73 (283)
                      +|.|+||.|+++|+.+++++|+++.    +..+|.+|.+|+||||+ +..++.+.+..              ..+++..+
T Consensus         1 r~~~~L~~A~~~g~~~~v~~ll~~~----~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            1 RAGDRLSGAAARGDVQEVRRLLHRE----LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTT----CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchHHHHHHHhCCHHHHHHHHHhh----CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            4679999999999999999999872    34689999999999999 87887654321              23667766


Q ss_pred             HHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           74 EELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        74 ~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      ...+..+.++.++..+ ..+.++. +|.||..++.+
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~  110 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVNVPDG-TGALPIHLAVQ  110 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHH
T ss_pred             HHcCcHHHHHHHHHcCCCCCCcCC-CCCcHHHHHHH
Confidence            6555555555554332 3445666 89999877654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.98  E-value=4e-10  Score=91.87  Aligned_cols=57  Identities=21%  Similarity=0.253  Sum_probs=50.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+
T Consensus        65 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~~~~~~v  121 (179)
T 3f6q_A           65 INVMNRGDDTPLHLAASHGHRDIVQKLLQYK-----ADINAVNEHGNVPLHYACFWGQDQVA  121 (179)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            4668899999999999999999999999874     56899999999999999999886653

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.98  E-value=3.9e-10  Score=103.59  Aligned_cols=82  Identities=20%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             cccc--CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhh
Q 041061            3 STVN--QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFE   80 (283)
Q Consensus         3 e~~D--~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~   80 (283)
                      +..|  .+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.                  
T Consensus       227 n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-----advn~~d~~G~TpLh~A~~~g~~~~------------------  283 (368)
T 3jue_A          227 NWVNGGQDNATPLIQATAANSLLACEFLLQNG-----ANVNQADSAGRGPLHHATILGHTGL------------------  283 (368)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHTCHHH------------------
T ss_pred             CccccccCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCcHHH------------------
Confidence            4455  88999999999999999999999873     5689999999999999999887432                  


Q ss_pred             hhhcccc-cccccccccccCCcccccccch
Q 041061           81 CVKDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        81 ~v~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                       ++.++. ....+.+|. +|.||.+++.+.
T Consensus       284 -v~~LL~~Gad~~~~d~-~G~TpL~~A~~~  311 (368)
T 3jue_A          284 -ACLFLKRGADLGARDS-EGRDPLTIAMET  311 (368)
T ss_dssp             -HHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             -HHHHHHCcCCCCCcCC-CCCCHHHHHHHC
Confidence             111111 123455666 888888876543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.98  E-value=4.5e-10  Score=95.44  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=72.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccC-CCCcHHHHHHhcCCcccccC--------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDE-NGYTILHHVADMKHYEYGIR--------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~-~GnTpLHlAa~~~~~~~~~~--------------~   66 (283)
                      ++..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|. +|+||||+|+..++.+.+..              .
T Consensus       110 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  184 (236)
T 1ikn_D          110 LKATNYNGHTCLHLASIHGYLGIVELLVSLG-----ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  184 (236)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             hhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC
Confidence            4678899999999999999999999999874     46899998 99999999999998665421              2


Q ss_pred             CChhhhHHHhhhhhhhhccccccc---ccccccccCCcccccccc
Q 041061           67 GPVYQFQEELQWFECVKDIAPSHY---TMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~~~---~~~~n~~~G~T~~dl~~~  108 (283)
                      .++++.+...+..+.++.++..+.   ....+. +|+|+.|...+
T Consensus       185 ~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~-~~~~~~~~~~~  228 (236)
T 1ikn_D          185 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES-EDEESYDTESE  228 (236)
T ss_dssp             CCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCC-CTTTCCCCC--
T ss_pred             CCHHHHHHccCchHHHHHHHHcchhhhhcCCcc-chHHHHhhhcc
Confidence            366666554444444444433322   234555 88898876543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.97  E-value=4.7e-10  Score=90.00  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=50.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.
T Consensus        68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~  123 (165)
T 3twr_A           68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHG-----AVVNVADLWKFTPLHEAAAKGKYEI  123 (165)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CCccCCCCCCHHHHHHHcCcHHHHHHHHhCC-----CCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            4678999999999999999999999999863     5689999999999999999988654

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.97  E-value=3.2e-10  Score=98.65  Aligned_cols=51  Identities=22%  Similarity=0.294  Sum_probs=44.2

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .+|+||||+|+.+|+.+++++|+++..  .+..+|.+|.+|+||||+|+..++
T Consensus       146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~gad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          146 YFGELPLSLAACTNQLAIVKFLLQNSW--QPADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             CSCBSHHHHHHHTTCHHHHHHHHHCSS--CCCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccc--CCCCceeeCCCCCcHHHHHHHccC
Confidence            489999999999999999999999310  145699999999999999998776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=98.97  E-value=6.5e-10  Score=89.37  Aligned_cols=57  Identities=18%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|..|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..++.+.+
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v  118 (167)
T 3v31_A           62 PQLLGKGRESALSLACSKGYTDIVKMLLDCG-----VDVNEYDWNGGTPLLYAVHGNHVKCV  118 (167)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCC-----CCCCcCCCCCCCHHHHHHHcCCHHHH
Confidence            3567899999999999999999999999874     45899999999999999999886643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.96  E-value=2.4e-10  Score=100.71  Aligned_cols=52  Identities=21%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCC-CcHHHHHHhcCCc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENG-YTILHHVADMKHY   60 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~G-nTpLHlAa~~~~~   60 (283)
                      .+|.+|+||||+|+.+|+.+++++|+++     +..+|.+|.+| +||||+|+..++.
T Consensus        90 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~  142 (285)
T 3kea_A           90 QFDDKGNTALYYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDV  142 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCH
T ss_pred             CcCCCCCcHHHHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCH
Confidence            3444455555555555555555555444     22344555555 4555555544443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.95  E-value=8.7e-10  Score=100.80  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.                   
T Consensus       159 vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-----a~~~~~~~~g~t~L~~A~~~g~~~~-------------------  214 (373)
T 2fo1_E          159 VNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKSERSALHQAAANRDFGM-------------------  214 (373)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHHHHTTCHHH-------------------
T ss_pred             CcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-----CCCcccCCCCCCHHHHHHHCCCHHH-------------------
Confidence            4678999999999999999999999999873     5689999999999999999887432                   


Q ss_pred             hhccccc----ccccccccccCCcccccccc
Q 041061           82 VKDIAPS----HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        82 v~~~~~~----~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++.++..    ...+..+. +|.||..++..
T Consensus       215 v~~Ll~~~~~~~~~~~~d~-~g~t~L~~A~~  244 (373)
T 2fo1_E          215 MVYMLNSTKLKGDIEELDR-NGMTALMIVAH  244 (373)
T ss_dssp             HHHHTTSHHHHHTTSCCCT-TSCCHHHHHHH
T ss_pred             HHHHHhcCccccChhhcCC-CCCCHHHHHHH
Confidence            2222221    12345566 89999877644

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=98.95  E-value=7.5e-10  Score=88.33  Aligned_cols=78  Identities=19%  Similarity=0.090  Sum_probs=60.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~   66 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..               .
T Consensus        63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  137 (162)
T 1ihb_A           63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQ-----ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  137 (162)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCC
Confidence            4567899999999999999999999999863     4689999999999999999988665321               2


Q ss_pred             CChhhhHHHhhhhhhhhc
Q 041061           67 GPVYQFQEELQWFECVKD   84 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~   84 (283)
                      .++++.+...+..+.++.
T Consensus       138 ~t~l~~A~~~~~~~~~~~  155 (162)
T 1ihb_A          138 DTACDLARLYGRNEVVSL  155 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHH
Confidence            367777665555554443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.95  E-value=4.9e-10  Score=98.72  Aligned_cols=99  Identities=9%  Similarity=-0.016  Sum_probs=68.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+  +|+||||+|+..|+.+.+..              ..
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~   96 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAG-----ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGN   96 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCC-----CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            4678999999999999999999999999863     446666  48999999998888665321              22


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccC-Ccccccccc
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKN-MTAGDLFNR  108 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G-~T~~dl~~~  108 (283)
                      +++..+...+..+.++.++..+ ..+.++. +| .||..++..
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~-~g~~t~L~~A~~  138 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGK-TGWKTSFYHAVM  138 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGGGGGCSS-SGGGSHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCccCC-CCCCCHHHHHHH
Confidence            5666665555555555444332 2344555 66 788766543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.95  E-value=7.6e-10  Score=92.86  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=77.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+.+..              ..
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  159 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSH-----ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREE  159 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcC-----CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCc
Confidence            3567889999999999999999999999863     4588999999999999999888665321              23


Q ss_pred             ChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccchh
Q 041061           68 PVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      ++++.+...+..+.++.++... ..+.+|. +|.||.+++.+..
T Consensus       160 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~t~l~~A~~~~  202 (223)
T 2f8y_A          160 TPLFLAAREGSYETAKVLLDHFANRDITDH-MDRLPRDIAQERM  202 (223)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TCCCHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccc-cCCCHHHHHHHhc
Confidence            6777776666566665554432 3456677 8999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.94  E-value=4.2e-10  Score=102.92  Aligned_cols=82  Identities=23%  Similarity=0.230  Sum_probs=64.1

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhh
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVK   83 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~   83 (283)
                      ..|.+|+||||+|+.+|+.+++++|+++++    ..+|.+|.+|+||||+|+..|+.+.                   ++
T Consensus       274 ~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----~~~n~~d~~g~TpL~~A~~~g~~~i-------------------v~  330 (373)
T 2fo1_E          274 SEKYKGRTALHYAAQVSNMPIVKYLVGEKG----SNKDKQDEDGKTPIMLAAQEGRIEV-------------------VM  330 (373)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSC----CCTTCCCTTCCCHHHHHHHHTCHHH-------------------HH
T ss_pred             cccccCCCHHHHHHHhCCHHHHHHHHHhcC----CCccCcCCCCCCHHHHHHHcCCHHH-------------------HH
Confidence            467899999999999999999999998742    5689999999999999999987432                   22


Q ss_pred             cccc-cccccccccccCCcccccccch
Q 041061           84 DIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        84 ~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++. ....+.+|. +|+||.+++.+.
T Consensus       331 ~Ll~~gad~~~~d~-~g~t~l~~A~~~  356 (373)
T 2fo1_E          331 YLIQQGASVEAVDA-TDHTARQLAQAN  356 (373)
T ss_dssp             HHHHTTCCSSCCCS-SSCCHHHHHHHT
T ss_pred             HHHHcCCCccCCCC-CCCCHHHHHHHc
Confidence            2221 123456777 899999987654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.94  E-value=1.1e-09  Score=89.87  Aligned_cols=54  Identities=26%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             ccccc-CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVN-QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D-~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+| .+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.
T Consensus       102 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~d~~g~tpl~~A~~~~~~  156 (183)
T 3deo_A          102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELG-----ADIEVEDERGLTALELAREILKT  156 (183)
T ss_dssp             TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHT-----CCTTCCCTTSCCHHHHHHHHHHT
T ss_pred             CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcC-----CCCcCCCCCCCCHHHHHHHhccC
Confidence            34566 88999999999999999999999874     46899999999999999987653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.94  E-value=2.8e-10  Score=103.12  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=58.6

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC------------CCChh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR------------PGPVY   70 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~------------~g~al   70 (283)
                      +..|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.+..            ..+++
T Consensus        14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-----~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L   88 (364)
T 3ljn_A           14 IKSDDENMEKIHVAARKGQTDEVRRLIETG-----VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPI   88 (364)
T ss_dssp             --CCHHHHHHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHH
Confidence            567889999999999999999999999863     4589999999999999999998765421            22566


Q ss_pred             hhHHHhhhhhhhhcc
Q 041061           71 QFQEELQWFECVKDI   85 (283)
Q Consensus        71 ~l~~~l~~~~~v~~~   85 (283)
                      ..+...+..+.++.+
T Consensus        89 ~~A~~~g~~~~v~~L  103 (364)
T 3ljn_A           89 HLAVMANKTDLVVAL  103 (364)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHH
Confidence            665544444444433

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.93  E-value=9.3e-10  Score=83.55  Aligned_cols=77  Identities=25%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g   67 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..++.+|.+|+||||+|+..++.+.+..              ..
T Consensus        28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-----~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~  102 (126)
T 1n0r_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-----ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR  102 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-----CCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCC
Confidence            3567899999999999999999999999863     4588999999999999999888665321              23


Q ss_pred             ChhhhHHHhhhhhhhh
Q 041061           68 PVYQFQEELQWFECVK   83 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~   83 (283)
                      ++++.+...+..+.++
T Consensus       103 t~l~~A~~~~~~~~~~  118 (126)
T 1n0r_A          103 TPLHLAARNGHLEVVK  118 (126)
T ss_dssp             CHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHcCcHHHHH
Confidence            5666665544444444

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.92  E-value=6.9e-10  Score=99.46  Aligned_cols=57  Identities=21%  Similarity=0.277  Sum_probs=47.0

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++.+|.+|+||||+|++.|+.++++.|++..    +..+|.+|.+|+||||+|+..|+.+.
T Consensus       232 ~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~----~~~vn~~d~~G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQE----HIEINDTDSDGKTALLLAVELKLKKI  288 (337)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHHHHHTST----TCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhc----CCcccCcCCCCCCHHHHHHHcCCHHH
Confidence            4567888999999999999999999988753    35688999999999999998887543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.92  E-value=8.2e-10  Score=102.38  Aligned_cols=54  Identities=24%  Similarity=0.140  Sum_probs=25.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +..|++|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+
T Consensus         8 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g-----~~~~~~~~~~~t~L~~A~~~g~~~   61 (437)
T 1n11_A            8 GGGGESGLTPLHVASFMGHLPIVKNLLQRG-----ASPNVSNVKVETPLHMAARAGHTE   61 (437)
T ss_dssp             -------CCHHHHHHHHTCHHHHHHHHHTT-----CCSCCSSSCCCCHHHHHHHHTCHH
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHcC-----CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            344555666666666666666666655542     234455555555555555555443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.89  E-value=1.5e-09  Score=93.78  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=73.9

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc----cccc--------------C
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY----EYGI--------------R   65 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~----~~~~--------------~   65 (283)
                      ..|..|+||||+|+.+|+.+++++|+++.    +..+|.+|.+|+||||.|+..++.    +.+.              .
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~  218 (285)
T 1wdy_A          143 RLRKGGATALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  218 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT
T ss_pred             hhccCCCcHHHHHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC
Confidence            45889999999999999999999999862    356899999999999999988873    2210              0


Q ss_pred             CCChhhhHHHhhhhhhhhcccc--cccccccccccCCcccccccch
Q 041061           66 PGPVYQFQEELQWFECVKDIAP--SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        66 ~g~al~l~~~l~~~~~v~~~~~--~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ..++++.+...+..+.++.++.  ....+.+|. +|+||.+++.+.
T Consensus       219 g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~-~g~t~l~~A~~~  263 (285)
T 1wdy_A          219 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVEL  263 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCT-TSCCHHHHHHHT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhccCCCccccCC-CCCcHHHHHHHc
Confidence            2367777666565666666554  223456677 899998887554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.89  E-value=1.3e-09  Score=100.23  Aligned_cols=55  Identities=13%  Similarity=0.139  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     +..+|.+|.+|+||||+|+..++.+
T Consensus       261 vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~-----Gad~~~~d~~G~TpL~~A~~~g~~~  315 (368)
T 3jue_A          261 VNQADSAGRGPLHHATILGHTGLACLFLKR-----GADLGARDSEGRDPLTIAMETANAD  315 (368)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHHC-----cCCCCCcCCCCCCHHHHHHHCCCHH
Confidence            567899999999999999999999999987     3568999999999999999988754

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.86  E-value=1.5e-09  Score=92.72  Aligned_cols=55  Identities=27%  Similarity=0.311  Sum_probs=49.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+
T Consensus        47 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-----a~~n~~d~~g~tpLh~A~~~g~~~  101 (229)
T 2vge_A           47 PSQPNEEGITALHNAICGANYSIVDFLITAG-----ANVNSPDSHGWTPLHCAASCNDTV  101 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            4678999999999999999999999999873     568999999999999999988754

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.85  E-value=3.2e-09  Score=89.40  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=59.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc-cccc---------------CC
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY-EYGI---------------RP   66 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~-~~~~---------------~~   66 (283)
                      +.+|..|+||||+|+.+|+.+++++|++++     ..++.+|.+|+||||+|+..++. +...               ..
T Consensus       103 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~-----~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g  177 (240)
T 3eu9_A          103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKG-----QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK  177 (240)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTC
T ss_pred             cccCCCCCCHHHHHHHcCHHHHHHHHHhcC-----CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCC
Confidence            345666777777777777777777776652     34677777777777777755542 1110               01


Q ss_pred             CChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccch
Q 041061           67 GPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~~  109 (283)
                      .++++.+...+..+.++.++..+ ..+.++. +|+||.+++.+.
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~~  220 (240)
T 3eu9_A          178 NTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESALDLAKQR  220 (240)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCBCT-TSCBHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC-CCCCHHHHHHHc
Confidence            25566655555455454444322 2345566 788888876554

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=98.85  E-value=1.4e-09  Score=103.51  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=51.6

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|+++     ++.+|.+|.+|+||||+|+..|+.+.+
T Consensus       200 vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-----ga~~~~~d~~g~tpl~~A~~~~~~~~~  256 (497)
T 3lvq_E          200 LDAKAADGNTALHYAALYNQPDCLKLLLKG-----RALVGTVNEAGETALDIARKKHHKECE  256 (497)
T ss_dssp             TTCCCSSSCCHHHHHTTTTCHHHHHHHHHT-----CCCCSCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             CCccCCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            577899999999999999999999999987     456999999999999999999986653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.85  E-value=2.5e-09  Score=92.33  Aligned_cols=53  Identities=25%  Similarity=0.183  Sum_probs=42.4

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            6 NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         6 D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      |..|+||||+|+++|+.+++++|++++     ..++.+|.+|+||||+|+..++.+.+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v   88 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG-----ADPVLRKKNGATPFLLAAIAGSVKLL   88 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC-----CCCcccCCCCCCHHHHHHHcCCHHHH
Confidence            677888888888888888888888763     45778888888888888888876543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.80  E-value=6.9e-09  Score=89.26  Aligned_cols=70  Identities=23%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             cccc-CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhh
Q 041061            3 STVN-QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFE   80 (283)
Q Consensus         3 e~~D-~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~   80 (283)
                      +.+| .+|+||||+|+.+|+.+++++|+++     +..+|.+|.+|+||||+|+..++...   ..++++.+...+..+
T Consensus       104 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~d~~g~t~l~~A~~~~~~~~---~~~~l~~a~~~g~~~  174 (244)
T 3ui2_A          104 DHRDMRGGLTALHMAAGYVRPEVVEALVEL-----GADIEVEDERGLTALELAREILKTTP---KGNPMQFGRRIGLEK  174 (244)
T ss_dssp             TCCCSSSCCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHHHTTCC---CSSHHHHHHHHHHHH
T ss_pred             CcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCCCCCCCCcHHHHHHHHHhccC---CCCHHHHHHHcChHH
Confidence            4566 7899999999999999999999987     35689999999999999997654321   335666655544443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.77  E-value=5.9e-09  Score=93.33  Aligned_cols=101  Identities=16%  Similarity=0.099  Sum_probs=70.6

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc---c----c-----------C
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY---G----I-----------R   65 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~---~----~-----------~   65 (283)
                      ..|..|+||||+|+++|+.+++++|+++.    +..+|.+|.+|+||||.++..++...   +    .           .
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~----gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~  238 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEM----GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER  238 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHS----CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhcc----CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC
Confidence            45778999999999999999999999763    45688999999999998876554221   1    0           0


Q ss_pred             CCChhhhHHHhhhhhhhhccccc--ccccccccccCCcccccccch
Q 041061           66 PGPVYQFQEELQWFECVKDIAPS--HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        66 ~g~al~l~~~l~~~~~v~~~~~~--~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ..+++..+...+..+.++.++..  ...+.+|+ +|.||+.++.+.
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~-~G~TpL~~A~~~  283 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS-DGKTALLLAVEL  283 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCT-TSCBHHHHHHHT
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCC-CCCCHHHHHHHc
Confidence            22566666555555566655543  34566777 899998876543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.76  E-value=1.3e-08  Score=87.09  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCC-cHHHHH--HhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGY-TILHHV--ADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~Gn-TpLHlA--a~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|. ||||+|  +..|+.+
T Consensus        96 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-----a~~~~~~~~~~~t~l~~a~~~~~g~~~  153 (239)
T 1ycs_B           96 VNAADSDGWTPLHCAASCNNVQVCKFLVESG-----AAVFAMTYSDMQTAADKCEEMEEGYTQ  153 (239)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-----CCcceecCCCCcchHHHHHHhhhccHH
Confidence            4678999999999999999999999999874     56899998887 999999  5556544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.74  E-value=5.6e-09  Score=87.89  Aligned_cols=101  Identities=11%  Similarity=0.010  Sum_probs=69.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---------------C
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---------------P   66 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---------------~   66 (283)
                      ++..|+.|.|+||.|+++|+.+++++|++.+     ..++.+|.+|+||||+|+..++.+.+..               .
T Consensus         2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g-----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~   76 (240)
T 3eu9_A            2 MTHIDDYSTWDIVKATQYGIYERCRELVEAG-----YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLN   76 (240)
T ss_dssp             CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTT
T ss_pred             ccccccccchHHHHHHHcCChHHHHHHHHcC-----CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcC
Confidence            3567889999999999999999999998863     4578889999999999999888654321               1


Q ss_pred             CChhhhHHHhhhhhhhhcccccc-cccccccccCCcccccccc
Q 041061           67 GPVYQFQEELQWFECVKDIAPSH-YTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        67 g~al~l~~~l~~~~~v~~~~~~~-~~~~~n~~~G~T~~dl~~~  108 (283)
                      .+++..+...+..+.++.++... ....++. +|.||...+..
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~-~g~t~l~~A~~  118 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQ  118 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT-TSCCHHHHHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCHHHHHHH
Confidence            25555555444455555444322 2334455 77888766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.37  E-value=2e-08  Score=92.40  Aligned_cols=100  Identities=12%  Similarity=0.065  Sum_probs=58.8

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC---CC-------------C
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR---PG-------------P   68 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~---~g-------------~   68 (283)
                      .+.+++||||+|+++|+.+++++|++++..  ....+..|.+|+||||+|+..|+.+.+..   .|             +
T Consensus        88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~--~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~T  165 (376)
T 2aja_A           88 KGIKSEVICFVAAITGCSSALDTLCLLLTS--DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  165 (376)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--C--CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             cCCCcCCHHHHHHHcCCHHHHHHHHHcCCc--HHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCC
Confidence            455677888888888888888888776431  12234556678888888888888665421   22             2


Q ss_pred             hhhhHHHhhhhhhhhccccccc-ccc--cccccCCccccccc
Q 041061           69 VYQFQEELQWFECVKDIAPSHY-TMH--RDTRKNMTAGDLFN  107 (283)
Q Consensus        69 al~l~~~l~~~~~v~~~~~~~~-~~~--~n~~~G~T~~dl~~  107 (283)
                      ++..+...+..+.++.++..+. ...  .+. +|.||..++.
T Consensus       166 pLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~-~g~TpL~~Aa  206 (376)
T 2aja_A          166 AFRLAAENGHLHVLNRLCELAPTEATAMIQA-ENYYAFRWAA  206 (376)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccchhccCC-CCCCHHHHHH
Confidence            3333333444445554443321 112  455 7888887765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.14  E-value=3e-07  Score=84.52  Aligned_cols=58  Identities=16%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYG   63 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~   63 (283)
                      +..|.+|+||||+|+++|+.+++++|++++.+  ....+..+.+ +||||+|+..|+.+.+
T Consensus       122 ~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad--~~~~~i~~~~-~TpLh~Aa~~G~~eiv  179 (376)
T 2aja_A          122 KVIQAENYQAFRLAAENGHLHVLNRLCELAPT--EIMAMIQAEN-YHAFRLAAENGHLHVL  179 (376)
T ss_dssp             C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT--THHHHHSHHH-HHHHHHHHHTTCHHHH
T ss_pred             HHhccCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccccCCCC-CCHHHHHHHCCCHHHH
Confidence            34556677777777777777777777765421  0001222222 6777777776665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	283
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.003
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.003

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 3/128 (2%)

Query: 5   VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI 64
           V + G T LH+AV  +      F++        ++    ++ G T LH  A +       
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSA--GHEYLDLQNDLGQTALHLAAILGEASTVE 62

Query: 65  RPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQ-LKKAQDWIKE 123
           +           +               H      +       R   D  L ++QD   +
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 124 TSESCSIL 131
           TS + + +
Sbjct: 123 TSHAPAAV 130

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 9/112 (8%), Positives = 24/112 (21%), Gaps = 1/112 (0%)

Query: 9   GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGP 68
           G + LH+A+      +   ++ ++   +     + +    T LH        E       
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLG 60

Query: 69  VYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDW 120
                E   +                       +    +     +       
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 12/92 (13%), Positives = 22/92 (23%), Gaps = 2/92 (2%)

Query: 9   GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGP 68
           G T LH+AV +        +V        +     +    T LH  A +      +R   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-NNLRQTPLHL-AVITTLPSVVRLLV 60

Query: 69  VYQFQEELQWFECVKDIAPSHYTMHRDTRKNM 100
                              +         + +
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRAL 92

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 10/118 (8%), Positives = 23/118 (19%), Gaps = 3/118 (2%)

Query: 6   NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARI---DENGYTILHHVADMKHYEY 62
            +  +T+LH        +  + ++           A +   D +  T L      +    
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 63  GIRPGPVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRTHEDQLKKAQDW 120
                            E       +           + +  L     E         
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 147

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 12/56 (21%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 6   NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE 61
            ++G+T L +AV ++   + Q ++E+  + +       D +G T L    ++K  +
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEI----NDTDSDGKTALLLAVELKLKK 267

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	283
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.46
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.29
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.24
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.22
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.21
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.2
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.15
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.14
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.13
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.12
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.09
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.06
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.04
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.03
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.02
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.02
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.0
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.89
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.88
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	98.87
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	98.86
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.81
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.71
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.71
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.65

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=3.2e-14  Score=107.94  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=61.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      ++.+|++|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+..++.+                   .
T Consensus        28 ~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g-----~din~~d~~g~tpLh~A~~~~~~~-------------------~   83 (118)
T d1myoa_          28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKG-----ADINAPDKHHITPLLSAVYEGHVS-------------------C   83 (118)
T ss_dssp             CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSS-----CTTTCCSSSCSCHHHHHHTTTCCH-------------------H
T ss_pred             ccccccccccccccccccccccccccccccc-----ceeeecccccccchhhhhhcCchh-------------------h
Confidence            4567888999999999999999998888763     458888889999999998887743                   2


Q ss_pred             hhccccc-ccccccccccCCcccccccc
Q 041061           82 VKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        82 v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      ++.++.. ...+.+|+ +|+||.+++..
T Consensus        84 v~~Ll~~Gad~~~~d~-~G~t~l~~a~~  110 (118)
T d1myoa_          84 VKLLLSKGADKTVKGP-DGLTALEATDN  110 (118)
T ss_dssp             HHHHHTTCCCSSSSSS-STCCCCCTCSS
T ss_pred             hhhhhcccccceeeCC-CCCCHHHHHhH
Confidence            2333322 23566777 99999998743

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=106.38  Aligned_cols=55  Identities=31%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|++|+||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+
T Consensus        27 ~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-----~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1          27 PSLPNDEGITALHNAVCAGHTEIVKFLVQFG-----VNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT-----CCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccccccccccccccccccccccccccccccc-----cccccccccCcccccccchhhHHH
Confidence            4678999999999999999999999999874     458999999999999999998843

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.2e-12  Score=103.88  Aligned_cols=81  Identities=22%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             cccCCCChHHHHHHHh---CCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhh
Q 041061            4 TVNQKGQTILHVAVRR---RRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFE   80 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~---g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~   80 (283)
                      ..|..|+||||+|++.   |+.+++++|++++     ..+|.+|.+|+||||+|+..|+.+.                  
T Consensus        40 ~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-----adin~~d~~g~TpLh~A~~~~~~~~------------------   96 (154)
T d1dcqa1          40 NGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-----GNLDKQTGKGSTALHYCCLTDNAEC------------------   96 (154)
T ss_dssp             SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-----SCTTCCCTTCCCHHHHHHHTTCHHH------------------
T ss_pred             cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-----CChhhhhhhhccccccccccccccc------------------
Confidence            3478899999999985   5789999999874     4589999999999999999887432                  


Q ss_pred             hhhccccc-ccccccccccCCcccccccch
Q 041061           81 CVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        81 ~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                       ++.++.. ...+.+|+ +|+||.+++.+.
T Consensus        97 -v~~Ll~~gad~~~~d~-~g~tpL~~A~~~  124 (154)
T d1dcqa1          97 -LKLLLRGKASIEIANE-SGETPLDIAKRL  124 (154)
T ss_dssp             -HHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             -cccccccCccccccCC-CCCCHHHHHHHc
Confidence             2222221 23456777 999999987654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.4e-12  Score=108.58  Aligned_cols=57  Identities=23%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ..+|++|+||||+||++|+.+++++|++++..  ...+|.+|++|+||||+|+..|+.+
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~--~~~i~~~~~~g~TpL~~A~~~g~~~   59 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAG--HEYLDLQNDLGQTALHLAAILGEAS   59 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTT--SGGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCC--cccccCcCCCCCCccchHHhhcccc
Confidence            35789999999999999999999999987542  3458999999999999999998844

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.1e-12  Score=104.84  Aligned_cols=106  Identities=18%  Similarity=0.125  Sum_probs=79.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc--------------CCC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI--------------RPG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~--------------~~g   67 (283)
                      ++.+|++|+||||+|+++|+.+++++|++++     ..+|.+|.+|.||||+|+..++.....              ...
T Consensus        96 ~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g-----~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~  170 (223)
T d1uoha_          96 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-----ANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGN  170 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCC
T ss_pred             eEeeCCCCCchhhHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCC
Confidence            3578999999999999999999999999863     457889999999999999888754321              023


Q ss_pred             ChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccchhhhh
Q 041061           68 PVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRTHEDQ  113 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~~~~~  113 (283)
                      +++..+...+..+.++.++.. ...+.+|+ +|+||.+++...|.+.
T Consensus       171 TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~-~g~tpl~~A~~~~~~i  216 (223)
T d1uoha_         171 TPLHLACDEERVEEAKLLVSQGASIYIENK-EEKTPLQVAKGGLGLI  216 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TSCCHHHHCCTTHHHH
T ss_pred             ceeccccccCcHHHHHHHHHCCCCCCCCCC-CCCCHHHHHHCCCHHH
Confidence            677777666556666655432 24567787 9999999986655443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.9e-12  Score=100.33  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|.||||+|++.++.+
T Consensus        74 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g-----ad~~~~d~~g~tpL~~A~~~~~~~  128 (154)
T d1dcqa1          74 LDKQTGKGSTALHYCCLTDNAECLKLLLRGK-----ASIEIANESGETPLDIAKRLKHEH  128 (154)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             hhhhhhhhccccccccccccccccccccccC-----ccccccCCCCCCHHHHHHHcCCHH
Confidence            5778999999999999999999999999863     568999999999999999988854

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.20  E-value=9.9e-12  Score=102.95  Aligned_cols=82  Identities=17%  Similarity=0.098  Sum_probs=65.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      +.+|.+|+||||+|+.+|+.+++++|++.+.    ..+|.+|.+|+||||+|+..++.+                   .+
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~----~~in~~d~~g~TpLh~A~~~~~~~-------------------~v  188 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGK----SAVNWQDKQGWTPLFHALAEGHGD-------------------AA  188 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTC----CCSCCCCTTSCCHHHHHHHTTCHH-------------------HH
T ss_pred             cccCCCCCCccchhhhccccccccccccccc----ccccccccccCCchhhhcccccHH-------------------HH
Confidence            4578999999999999999999999998643    568999999999999999988743                   23


Q ss_pred             hcccc--cccccccccccCCcccccccc
Q 041061           83 KDIAP--SHYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        83 ~~~~~--~~~~~~~n~~~G~T~~dl~~~  108 (283)
                      +.++.  +...+.+|+ +|+||.+++.+
T Consensus       189 ~~Ll~~~gad~~~~d~-~g~t~l~~A~~  215 (229)
T d1ixva_         189 VLLVEKYGAEYDLVDN-KGAKAEDVALN  215 (229)
T ss_dssp             HHHHHHHCCCSCCCCT-TSCCTGGGCSC
T ss_pred             HHHHHhcCCCCCCcCC-CCCCHHHHHhh
Confidence            33332  224567787 99999999864

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.15  E-value=3.3e-11  Score=103.29  Aligned_cols=89  Identities=19%  Similarity=0.182  Sum_probs=68.2

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhh
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECV   82 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v   82 (283)
                      ...+..|.||||+|+.+|+.+++++|++.+     ..+|.+|.+|+||||+|+..|+.+.                   +
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-----~din~~~~~g~TpL~~A~~~g~~~i-------------------v  248 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQAR-----YDVNIKDYDGWTPLHAAAHWGKEEA-------------------C  248 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCTTCCCHHHHHHHTTCHHH-------------------H
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccce-----ecccccccCCCCHHHHHHHcCCHHH-------------------H
Confidence            346789999999999999999999999863     4689999999999999999988432                   2


Q ss_pred             hccccc-ccccccccccCCcccccccchhhhhHHh
Q 041061           83 KDIAPS-HYTMHRDTRKNMTAGDLFNRTHEDQLKK  116 (283)
Q Consensus        83 ~~~~~~-~~~~~~n~~~G~T~~dl~~~~~~~~~~~  116 (283)
                      +.++.. ...+.+|+ +|+||.+++.+...+++++
T Consensus       249 ~lLl~~Gadv~~~d~-~G~TaL~~A~e~~~~~L~~  282 (291)
T d1s70b_         249 RILVENLCDMEAVNK-VGQTAFDVADEDILGYLEE  282 (291)
T ss_dssp             HHHHHTTCCTTCCCT-TSCCTTTSCCSGGGHHHHH
T ss_pred             HHHHHCCCCCCCcCC-CCCCHHHHHHHHHHHHHHH
Confidence            222221 23466777 9999999997654444443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.14  E-value=1.6e-11  Score=95.54  Aligned_cols=55  Identities=11%  Similarity=0.093  Sum_probs=49.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+..|+.+++++|++.     +..+|.+|++|+||||+|+.+|+.+
T Consensus        93 ~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~-----gad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          93 VNAKDMLKMTALHWATEHNHQEVVELLIKY-----GADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-----TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccCchHHHhhhhcchhheeeecccc-----ccCCcccCCCCCCHHHHHHHcCCHH
Confidence            356799999999999999999999999986     3568999999999999999999854

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=1.8e-11  Score=99.96  Aligned_cols=55  Identities=13%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+.+|+.+++++|++++     ..+|.+|.+|+||||+|+++|+.+
T Consensus       149 ~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-----ad~n~~d~~g~Tpl~~A~~~~~~~  203 (209)
T d1ot8a_         149 RDAQDDKDETPLFLAAREGSYEASKALLDNF-----ANREITDHMDRLPRDVASERLHHD  203 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             ccccccccccccchhccccHHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHHcCCHH
Confidence            4667888999999999999999999998863     458889999999999999888854

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.3e-11  Score=101.20  Aligned_cols=106  Identities=18%  Similarity=0.138  Sum_probs=69.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCC----------------------------cccccccccCCCCcHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY----------------------------VPKWAARIDENGYTILHH   53 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~----------------------------~~~~vn~~D~~GnTpLHl   53 (283)
                      ++.+|++|+||||+|+.+|+.++++++++.....                            .+..+|.+|.+|+||||+
T Consensus        30 ~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~  109 (223)
T d1uoha_          30 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY  109 (223)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhH
Confidence            5788999999999999999999999998765320                            234578899999999999


Q ss_pred             HHhcCCcccccC--------------CCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccc
Q 041061           54 VADMKHYEYGIR--------------PGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNR  108 (283)
Q Consensus        54 Aa~~~~~~~~~~--------------~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~  108 (283)
                      |+..++.+.+..              ..+++.........+.++.+... ...+.++. +|.||..++..
T Consensus       110 A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~-~g~TpL~~Aa~  178 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT-EGNTPLHLACD  178 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCT-TCCCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccC-CCCceeccccc
Confidence            999887654311              12444444333322222222211 12345555 78888766543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.4e-11  Score=98.35  Aligned_cols=54  Identities=19%  Similarity=0.078  Sum_probs=45.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            7 QKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         7 ~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++|+||||+||++|+.++++.|++.... .+..+|.+|.+|+||||+|+..|+.+
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~-~g~~in~~d~~g~TpL~~A~~~~~~~   54 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQ-GGRELDIYNNLRQTPLHLAVITTLPS   54 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCccCCCCCccceehhcccccc
Confidence            4799999999999999999999863211 24568999999999999999998754

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.8e-11  Score=108.28  Aligned_cols=55  Identities=16%  Similarity=0.239  Sum_probs=49.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|++|+||||+||++|+.+++++|++++     +.+|.+|++|+||||+|+++|+.+
T Consensus       323 in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~G-----Ad~n~~d~~G~t~L~~A~~~~~~~  377 (408)
T d1n11a_         323 VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-----ASPNEVSSDGTTPLAIAKRLGYIS  377 (408)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-----CCSCCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHHcCCHH
Confidence            5678999999999999999999999999873     569999999999999999999854

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.7e-11  Score=100.39  Aligned_cols=55  Identities=25%  Similarity=0.174  Sum_probs=47.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|++|+||||+|+.+|+.+++++|++.     +..++.+|.+|.||||.|+..++.+
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~-----g~d~~~~d~~g~t~l~~~~~~~~~~   86 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGA-----GCDPELRDFRGNTPLHLACEQGCLA   86 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSC-----CCCSCCCCTTCCCHHHHHHHHTCHH
T ss_pred             cccCCCCCCccccccccccccccccccccc-----ccccccccccccccccccccccccc
Confidence            567899999999999999999999999775     3458899999999999999877643

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=7.1e-11  Score=99.25  Aligned_cols=84  Identities=18%  Similarity=0.113  Sum_probs=62.8

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      ++.+|.+|+||||+||++|+.+++++|++...    ...+.+|.+|+||||+|++.++.+.                   
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~----~~~~~~~~~g~TpL~~A~~~~~~~~-------------------  207 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA----DLNKPEPTCGRTPLHLAVEAQAASV-------------------  207 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC----CTTCCCTTTCCCHHHHHHHTTCHHH-------------------
T ss_pred             cccccccCcccccccccccccccccchhcccc----cccccccccccccccccccccHHHH-------------------
Confidence            46789999999999999999999999998754    2234568899999999999887432                   


Q ss_pred             hhcccc-cccccccccccCCcccccccch
Q 041061           82 VKDIAP-SHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        82 v~~~~~-~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++-++. ....+.+|+ +|+||.+++...
T Consensus       208 v~~Ll~~gadin~~d~-~g~t~L~~A~~~  235 (255)
T d1oy3d_         208 LELLLKAGADPTARMY-GGRTPLGSALLR  235 (255)
T ss_dssp             HHHHHHTTCCTTCCCT-TSCCHHHHHHTS
T ss_pred             HHHHHHCCCCCCCCCC-CCCCHHHHHHHC
Confidence            111111 123456777 899999886443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.04  E-value=2.3e-11  Score=91.70  Aligned_cols=49  Identities=16%  Similarity=0.137  Sum_probs=44.7

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHH
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVA   55 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa   55 (283)
                      ++.+|.+|+||||+|+++|+.+++++|+++     +..+|.+|++|+||||+|.
T Consensus        61 in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~-----Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          61 INAPDKHHITPLLSAVYEGHVSCVKLLLSK-----GADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCSSSCSCHHHHHHTTTCCHHHHHHHTT-----CCCSSSSSSSTCCCCCTCS
T ss_pred             eeecccccccchhhhhhcCchhhhhhhhcc-----cccceeeCCCCCCHHHHHh
Confidence            467899999999999999999999999986     3568999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.03  E-value=8.6e-11  Score=99.56  Aligned_cols=55  Identities=13%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|..|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|++.|+.+
T Consensus       214 ~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g-----adin~~d~~G~T~L~~A~~~~~~~  268 (277)
T d2fo1e1         214 KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG-----ASVEAVDATDHTARQLAQANNHHN  268 (277)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT-----CCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHCc-----CCCCCcCCCCCCHHHHHHHcCCHH
Confidence            3567999999999999999999999999863     568999999999999999999854

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=88.64  Aligned_cols=54  Identities=13%  Similarity=0.069  Sum_probs=41.4

Q ss_pred             ccccCCCC-hHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            3 STVNQKGQ-TILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         3 e~~D~~G~-t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      +.+|.+|. ||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+++|+.+
T Consensus        62 ~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~g-----a~~~~~d~~G~T~l~~A~~~g~~~  116 (125)
T d1bi7b_          62 NCADPATLTRPVHDAAREGFLDTLVVLHRAG-----ARLDVRDAWGRLPVDLAEELGHRD  116 (125)
T ss_dssp             CCCCTTTCCCHHHHHHHHTCHHHHHHHHHHT-----CCSSCCCTTCCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccccccccc-----cccccccCCCCCHHHHHHHcCCHH
Confidence            45666665 5888888888888888888763     457888888888888888887743

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.1e-10  Score=91.57  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=45.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|++|+||||+|++.|+.+++++|++.      ..+|.+|.+|+||||+|++.|+.+
T Consensus        94 ~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~------~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          94 VNVPDGTGALPIHLAVQEGHTAVVSFLAAE------SDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT------SCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             cccccCCCCeeecccccccccccccccccc------ccccccCCCCCCHHHHHHHcCCHH
Confidence            467788999999999999999999988742      357889999999999999888743

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.3e-11  Score=97.48  Aligned_cols=54  Identities=15%  Similarity=0.054  Sum_probs=47.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHY   60 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~   60 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|.+|+||||+|+++|+.
T Consensus       170 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~G-----ad~n~~d~~G~TpL~~A~~~~~~  223 (228)
T d1k1aa_         170 VNAQMYSGSSALHSASGRGLLPLVRTLVRSG-----ADSSLKNCHNDTPLMVARSRRVI  223 (228)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-----CCTTCCCTTSCCTTTTCSSHHHH
T ss_pred             cccccccCcchHHHHHHcCCHHHHHHHHHCC-----CCCCCCCCCCCCHHHHHHhCCCc
Confidence            4567899999999999999999999999873     46899999999999999987764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=1.9e-10  Score=100.02  Aligned_cols=50  Identities=18%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             ccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            5 VNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         5 ~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      .|++|+||||+||.+|+.+++++|+++     ++.++.+|++|+||||+|+..++
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~-----gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKH-----GSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHT-----TCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHC-----CCCCCcCCcccccHHHHhhhccc
Confidence            389999999999999999999999986     45689999999999999998765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-10  Score=97.55  Aligned_cols=56  Identities=21%  Similarity=0.286  Sum_probs=49.9

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++..    +..+|.+|.+|+||||+|++.++.+
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~----g~din~~d~~G~TpL~~A~~~~~~e  267 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQE----HIEINDTDSDGKTALLLAVELKLKK  267 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS----SCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcC----CCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            4667999999999999999999999999863    3579999999999999999999854

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=2.9e-10  Score=92.48  Aligned_cols=83  Identities=17%  Similarity=0.172  Sum_probs=65.2

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFEC   81 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~   81 (283)
                      ++.+|..|+|+||+|+.+++.++++.+++..     ..+|.+|.+|+||||+|+..|+.+.                   
T Consensus       116 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~-----~~~~~~d~~g~TpL~~A~~~g~~~~-------------------  171 (209)
T d1ot8a_         116 INAADNSGKTALHWAAAVNNTEAVNILLMHH-----ANRDAQDDKDETPLFLAAREGSYEA-------------------  171 (209)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTCCCHHHHHHHTTCHHH-------------------
T ss_pred             ccccCCCCCCcchhhcccCcceeeeeecccc-----ccccccccccccccchhccccHHHH-------------------
Confidence            4678999999999999999999999998864     3589999999999999999988543                   


Q ss_pred             hhccccc-ccccccccccCCcccccccch
Q 041061           82 VKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        82 v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++.++.. ...+.+|+ +|.||.+++.+.
T Consensus       172 v~~Ll~~gad~n~~d~-~g~Tpl~~A~~~  199 (209)
T d1ot8a_         172 SKALLDNFANREITDH-MDRLPRDVASER  199 (209)
T ss_dssp             HHHHHHTTCCTTCCCT-TSCCHHHHHHHT
T ss_pred             HHHHHHCCCCCCCcCC-CCCCHHHHHHHc
Confidence            2222221 23456777 999999987654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.4e-10  Score=87.46  Aligned_cols=101  Identities=16%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccccc-------------C-CC
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGI-------------R-PG   67 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~-------------~-~g   67 (283)
                      ++.+|..|+||||+|+ +|+.+++++|++++.     .+|.++.+|++|+|.|+..++.+...             . ..
T Consensus        29 ~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~  102 (156)
T d1bd8a_          29 PDALNRFGKTALQVMM-FGSTAIALELLKQGA-----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGA  102 (156)
T ss_dssp             TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred             CCccCCCCCccccccc-ccccccccccccccc-----cccccccccccccccccccccccccccccccccccccccCCCC
Confidence            3567888999999886 477888888887643     36677777777777777766643211             0 12


Q ss_pred             ChhhhHHHhhhhhhhhcccccccccccccccCCcccccccch
Q 041061           68 PVYQFQEELQWFECVKDIAPSHYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        68 ~al~l~~~l~~~~~v~~~~~~~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +++..+..-+..+.++.++.......+|. +|+||.+++.+.
T Consensus       103 t~L~~A~~~~~~~i~~~L~~~~~~~~~d~-~G~TpL~~A~~~  143 (156)
T d1bd8a_         103 LPIHLAVQEGHTAVVSFLAAESDLHRRDA-RGLTPLELALQR  143 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTSCTTCCCT-TSCCHHHHHHHS
T ss_pred             eeeccccccccccccccccccccccccCC-CCCCHHHHHHHc
Confidence            45555444444444444443344566777 999999887554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=2.9e-10  Score=88.15  Aligned_cols=48  Identities=21%  Similarity=0.142  Sum_probs=40.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            9 GQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         9 G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      +.||||.||+.|+.+++++|++++.     .++ +|.+|+||||+|+..++.+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga-----~~~-~~~~g~t~L~~a~~~~~~~~   49 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGA-----PFT-TDWLGTSPLHLAAQYGHFST   49 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTC-----CCC-CCTTCCCHHHHHHHHTCHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCC-----Ccc-cccCCCcccccccccccccc
Confidence            3599999999999999999999754     244 69999999999998887553

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=6.2e-10  Score=91.89  Aligned_cols=49  Identities=20%  Similarity=0.280  Sum_probs=37.6

Q ss_pred             cCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCC
Q 041061            6 NQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKH   59 (283)
Q Consensus         6 D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~   59 (283)
                      |.+|+||||+|+++|+.+++++|++.     +.++|.+|.+|+||||+|+..++
T Consensus       142 ~~~G~T~L~~A~~~g~~~~v~~Ll~~-----gad~~~~~~~G~tpl~~A~~~~~  190 (221)
T d1iknd_         142 PCNGRTALHLAVDLQNPDLVSLLLKC-----GADVNRVTYQGYSPYQLTWGRPS  190 (221)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTT-----TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred             ccCCCCccccccccccHHHHHHHHhc-----CCcccccCCCCCCHHHHHHHCCC
Confidence            45688888888888888888888765     34578888888888888877665

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.2e-10  Score=86.98  Aligned_cols=95  Identities=12%  Similarity=-0.005  Sum_probs=66.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcccccC--------------CC-Chhhh
Q 041061            8 KGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEYGIR--------------PG-PVYQF   72 (283)
Q Consensus         8 ~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~~~~--------------~g-~al~l   72 (283)
                      .+.|+||+|+++|+.+++++|++++     ..+|.+|.+|+||||.|. .|+.+.+..              .+ +++..
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g-----ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG-----ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT-----CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC-----Cccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            4678999999999999999998763     458899999999999775 566554310              12 35666


Q ss_pred             HHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           73 QEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        73 ~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      +...+..+.++.++.. ...+.+|+ +|+||.+++.+.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~~d~-~G~T~l~~A~~~  112 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDVRDA-WGRLPVDLAEEL  112 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCT-TCCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccC-CCCCHHHHHHHc
Confidence            6555555555555443 23556777 999998876543

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=2.7e-10  Score=97.46  Aligned_cols=50  Identities=18%  Similarity=0.271  Sum_probs=45.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVAD   56 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~   56 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|++|+||||+|+.
T Consensus       225 in~~~~~g~TpL~~A~~~g~~~iv~lLl~~G-----adv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         225 VNIKDYDGWTPLHAAAHWGKEEACRILVENL-----CDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-----CCTTCCCTTSCCTTTSCCS
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHHCC-----CCCCCcCCCCCCHHHHHHH
Confidence            4678999999999999999999999999863     5689999999999999974

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.87  E-value=3.9e-10  Score=93.03  Aligned_cols=51  Identities=20%  Similarity=0.163  Sum_probs=45.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHh
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVAD   56 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~   56 (283)
                      ++.+|++|+||||+|+++|+.+++++|+++.    +..+|.+|++|+||||+|+.
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~----gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKY----GAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH----CCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccccCCchhhhcccccHHHHHHHHHhc----CCCCCCcCCCCCCHHHHHhh
Confidence            4678999999999999999999999999752    35689999999999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.1e-10  Score=98.47  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=55.3

Q ss_pred             ccccCCCChHHHHHHHhCCHHHHHHHHHhCCCC----------------------------cccccccccCCCCcHHHHH
Q 041061            3 STVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY----------------------------VPKWAARIDENGYTILHHV   54 (283)
Q Consensus         3 e~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~----------------------------~~~~vn~~D~~GnTpLHlA   54 (283)
                      +..|.+|.||||.|++.++.+++++|++++.+.                            .+..+|.+|.+|+||||+|
T Consensus       258 ~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A  337 (408)
T d1n11a_         258 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA  337 (408)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHH
Confidence            345666777777777777777777776653210                            1234677777777777777


Q ss_pred             HhcCCcccccCCCChhhhHHHhhhhhhhhccccc-ccccccccccCCcccccccch
Q 041061           55 ADMKHYEYGIRPGPVYQFQEELQWFECVKDIAPS-HYTMHRDTRKNMTAGDLFNRT  109 (283)
Q Consensus        55 a~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~~-~~~~~~n~~~G~T~~dl~~~~  109 (283)
                      ++.|+.                   +.++.++.. ...+.+|+ +|+||.+++.+.
T Consensus       338 ~~~g~~-------------------~iv~~Ll~~GAd~n~~d~-~G~t~L~~A~~~  373 (408)
T d1n11a_         338 AQQGHT-------------------DIVTLLLKNGASPNEVSS-DGTTPLAIAKRL  373 (408)
T ss_dssp             HHTTCH-------------------HHHHHHHHTTCCSCCCCS-SSCCHHHHHHHT
T ss_pred             HHcCCH-------------------HHHHHHHHCCCCCCCCCC-CCCCHHHHHHHc
Confidence            776663                   333333322 23567788 999999988654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.4e-10  Score=85.38  Aligned_cols=47  Identities=21%  Similarity=0.237  Sum_probs=42.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061           11 TILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus        11 t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      ++||.|++.|+.+++++|++++     ..+|.+|++|+||||+|+..++.+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-----~d~n~~d~~g~t~Lh~A~~~~~~~~   49 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-----DDPSLPNDEGITALHNAVCAGHTEI   49 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-----SSCCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-----CCccccccccccccccccccccccc
Confidence            6899999999999999999863     4689999999999999999988554

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.85  E-value=1.2e-09  Score=92.20  Aligned_cols=55  Identities=16%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+|+++|+.+++++|++++     ..+|.+|++|+||||+|...++..
T Consensus        67 vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-----ad~n~~~~~g~t~l~~a~~~~~~~  121 (277)
T d2fo1e1          67 VNAMDCDENTPLMLAVLARRRRLVAYLMKAG-----ADPTIYNKSERSALHQAAANRDFG  121 (277)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-----CCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred             ccccCCCCCeeeccccccccccccccccccc-----cccccccccccccccchhhhcchh
Confidence            4678999999999999999999999999974     458999999999999999888743

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.6e-10  Score=86.37  Aligned_cols=46  Identities=15%  Similarity=0.091  Sum_probs=34.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061           11 TILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus        11 t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      |+||+||++|+.+++++|++++     ..+|.+|.+|+||||+|+ .++.+.
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g-----~d~n~~d~~g~TpL~~A~-~~~~ei   48 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN-----VNVNAQNGFGRTALQVMK-LGNPEI   48 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC-----CCTTCCCTTSCCHHHHCC-SSCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC-----CCcCccCCcccccccccc-cccccc
Confidence            7888888888888888887753     457788888888888775 455443

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.81  E-value=2e-10  Score=102.25  Aligned_cols=54  Identities=15%  Similarity=0.169  Sum_probs=27.4

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHH---HHhCCCCcccccccccCCCCcHHHHHHhcCCccc
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFI---VEKMPLYVPKWAARIDENGYTILHHVADMKHYEY   62 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~L---l~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~~   62 (283)
                      .+|.+|+|+||+|+++|+.++++++   ++.     +..+|.+|.+|+||||+|+++||.++
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~-----~~~in~~~~~g~taL~~Aa~~G~~~~  141 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTS-----DEIVKVIQAENYQAFRLAAENGHLHV  141 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--C-----CSSCC--CHHHHHHHHHHHHTTCHHH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhC-----CCcccccCCCCCCHHHHHHHCCCHHH
Confidence            3455556666666666665555442   221     34455566666666666666555444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6e-09  Score=80.74  Aligned_cols=56  Identities=16%  Similarity=0.242  Sum_probs=48.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCcccccccccCCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARIDENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D~~GnTpLHlAa~~~~~~   61 (283)
                      ++..|..|.++||+|++.++.+++++|+++++    ...+.+|++|+||||+|++.++.+
T Consensus        92 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~d~~g~TpL~~A~~~~~~~  147 (156)
T d1ihba_          92 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA----SNVGHRNHKGDTACDLARLYGRNE  147 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC----CCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccccccccccccccccccccccccccccc----ccccccCCCCCCHHHHHHHcCCHH
Confidence            35678899999999999999999999998854    457899999999999999988854

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=4.8e-09  Score=90.98  Aligned_cols=47  Identities=17%  Similarity=0.150  Sum_probs=35.5

Q ss_pred             cccccCCCCcHHHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcccc-cccccccccccCCcccccc
Q 041061           40 AARIDENGYTILHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAP-SHYTMHRDTRKNMTAGDLF  106 (283)
Q Consensus        40 vn~~D~~GnTpLHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~-~~~~~~~n~~~G~T~~dl~  106 (283)
                      +|.+|.+|+||||+|++.|+.+.                   ++.++. ....+.+|+ +|+||.|.+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~i-------------------v~~Ll~~GAd~~~~n~-~G~Tpl~~A  299 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISI-------------------VDALLDYGADPFIANK-SGLRPVDFG  299 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHH-------------------HHHHHHTTCCTTCCCT-TSCCGGGGT
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHH-------------------HHHHHHCCCCCCCCCC-CCCCHHHHc
Confidence            79999999999999999998432                   222222 124567888 999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.71  E-value=2.8e-10  Score=101.28  Aligned_cols=55  Identities=11%  Similarity=0.192  Sum_probs=45.5

Q ss_pred             cccccCCCChHHHHHHHhCCHHHHHHHHHhCCCCccccccccc--CCCCcHHHHHHhcCCcc
Q 041061            2 LSTVNQKGQTILHVAVRRRRHDIFQFIVEKMPLYVPKWAARID--ENGYTILHHVADMKHYE   61 (283)
Q Consensus         2 ie~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~~~~~vn~~D--~~GnTpLHlAa~~~~~~   61 (283)
                      ++.+|.+|+||||+||++||.+++++|++.+.     .+|.+|  .+|+||||+|+..||.+
T Consensus       119 in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~-----~~~~~~~~~~g~t~L~~Aa~~g~~~  175 (346)
T d2ajaa1         119 VKVIQAENYQAFRLAAENGHLHVLNRLCELAP-----TEIMAMIQAENYHAFRLAAENGHLH  175 (346)
T ss_dssp             CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT-----TTHHHHHSHHHHHHHHHHHHTTCHH
T ss_pred             ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC-----CccccccccCCCChhHHHHHHhhHH
Confidence            56789999999999999999999999998743     466655  67999999999999843

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.2e-08  Score=86.27  Aligned_cols=87  Identities=18%  Similarity=0.129  Sum_probs=59.4

Q ss_pred             cccCCCChHHHHHHHhCCHHHHHHHHHhCCCC---------------------------------cccccccccCCCCcH
Q 041061            4 TVNQKGQTILHVAVRRRRHDIFQFIVEKMPLY---------------------------------VPKWAARIDENGYTI   50 (283)
Q Consensus         4 ~~D~~G~t~LH~Av~~g~~~iv~~Ll~~~~~~---------------------------------~~~~vn~~D~~GnTp   50 (283)
                      ..+..|+||||+|+++|+.+++++|+++.+..                                 .+..+|.+|.+|+||
T Consensus       143 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~  222 (285)
T d1wdya_         143 RLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTP  222 (285)
T ss_dssp             HTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             hhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCc
Confidence            45678999999999999999999999753210                                 122446677777777


Q ss_pred             HHHHHhcCCcccccCCCChhhhHHHhhhhhhhhcccc--cccccccccccCCcccccccchh
Q 041061           51 LHHVADMKHYEYGIRPGPVYQFQEELQWFECVKDIAP--SHYTMHRDTRKNMTAGDLFNRTH  110 (283)
Q Consensus        51 LHlAa~~~~~~~~~~~g~al~l~~~l~~~~~v~~~~~--~~~~~~~n~~~G~T~~dl~~~~~  110 (283)
                      ||.|+..++.                   +.++.++.  ....+.+|. +|.||..++.+..
T Consensus       223 L~~a~~~~~~-------------------~~v~~lL~~~g~din~~d~-~G~TpL~~A~~~~  264 (285)
T d1wdya_         223 LILAVEKKHL-------------------GLVQRLLEQEHIEINDTDS-DGKTALLLAVELK  264 (285)
T ss_dssp             HHHHHHTTCH-------------------HHHHHHHHSSSCCTTCCCT-TSCCHHHHHHHTT
T ss_pred             cchhhhcCcH-------------------HHHHHHHHcCCCCCcCCCC-CCCCHHHHHHHcC
Confidence            7777776653                   23333332  224556777 9999998876543