Citrus Sinensis ID: 041066
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 296090607 | 521 | unnamed protein product [Vitis vinifera] | 0.990 | 0.625 | 0.638 | 1e-121 | |
| 225439014 | 526 | PREDICTED: uncharacterized protein LOC10 | 0.990 | 0.619 | 0.638 | 1e-120 | |
| 449451621 | 520 | PREDICTED: protein spinster-like [Cucumi | 0.987 | 0.625 | 0.584 | 1e-116 | |
| 255545694 | 526 | carbohydrate transporter, putative [Rici | 0.984 | 0.615 | 0.574 | 1e-114 | |
| 224096193 | 520 | predicted protein [Populus trichocarpa] | 0.990 | 0.626 | 0.620 | 1e-112 | |
| 224099933 | 520 | predicted protein [Populus trichocarpa] | 0.990 | 0.626 | 0.620 | 1e-112 | |
| 225459330 | 522 | PREDICTED: purine efflux pump PbuE [Viti | 0.987 | 0.622 | 0.609 | 1e-110 | |
| 449437244 | 521 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.621 | 0.586 | 1e-108 | |
| 449502871 | 521 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.984 | 0.621 | 0.586 | 1e-108 | |
| 356528477 | 512 | PREDICTED: uncharacterized protein LOC10 | 0.927 | 0.595 | 0.602 | 1e-107 |
| >gi|296090607|emb|CBI40991.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 273/362 (75%), Gaps = 36/362 (9%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAFCFVI------- 53
MGIPGWR+ FHLVG+ISVIVGILV LFA D SDG + AKD+ P K F +
Sbjct: 159 MGIPGWRVAFHLVGVISVIVGILVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEA 218
Query: 54 --------FAYVV--------------------RTIGFSHGLTVFLMTLFTIAGSLGGLF 85
F +V IGFSH T FLMTLF I+GS+GGLF
Sbjct: 219 KSVIRIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLF 278
Query: 86 GGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145
GG MGD L KRLPNSGRIILSQISS S +P+A VLLL+LPDDPST FMHGLVL IMGLCI
Sbjct: 279 GGKMGDVLAKRLPNSGRIILSQISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCI 338
Query: 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
SWN TNNPIFAEIVPE+SRTS+YALDRSFESILASFAPPVVG+L+Q V+GYKP+P+G+
Sbjct: 339 SWNPAATNNPIFAEIVPEKSRTSVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGS 398
Query: 206 SNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQ 265
++S ++ETDRENAASLAKALYTAI IP +CC IYSFLY TYPRDRER R+ ALI+SEMQ
Sbjct: 399 TDSAQIETDRENAASLAKALYTAISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQ 458
Query: 266 KLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFS 325
++++D PS ++ SQ HFSE+KE N+KE + I+IEY G+E+ D+DDNDKK+LLP+Q FS
Sbjct: 459 QMDRDELPSGEEYSQLHFSETKEPNDKERSVIEIEY-GDENLDVDDNDKKTLLPNQQKFS 517
Query: 326 NL 327
+L
Sbjct: 518 HL 519
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439014|ref|XP_002262789.1| PREDICTED: uncharacterized protein LOC100241664 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/362 (63%), Positives = 273/362 (75%), Gaps = 36/362 (9%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAFCFVI------- 53
MGIPGWR+ FHLVG+ISVIVGILV LFA D SDG + AKD+ P K F +
Sbjct: 164 MGIPGWRVAFHLVGVISVIVGILVRLFATDPHFSDGNNLAKDKIPSKPFWSEVKDLVKEA 223
Query: 54 --------FAYVV--------------------RTIGFSHGLTVFLMTLFTIAGSLGGLF 85
F +V IGFSH T FLMTLF I+GS+GGLF
Sbjct: 224 KSVIRIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHKKTAFLMTLFVISGSIGGLF 283
Query: 86 GGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145
GG MGD L KRLPNSGRIILSQISS S +P+A VLLL+LPDDPST FMHGLVL IMGLCI
Sbjct: 284 GGKMGDVLAKRLPNSGRIILSQISSASGVPLATVLLLLLPDDPSTAFMHGLVLFIMGLCI 343
Query: 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
SWN TNNPIFAEIVPE+SRTS+YALDRSFESILASFAPPVVG+L+Q V+GYKP+P+G+
Sbjct: 344 SWNPAATNNPIFAEIVPEKSRTSVYALDRSFESILASFAPPVVGILSQRVYGYKPIPEGS 403
Query: 206 SNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQ 265
++S ++ETDRENAASLAKALYTAI IP +CC IYSFLY TYPRDRER R+ ALI+SEMQ
Sbjct: 404 TDSAQIETDRENAASLAKALYTAISIPFVVCCLIYSFLYRTYPRDRERARMQALIDSEMQ 463
Query: 266 KLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFS 325
++++D PS ++ SQ HFSE+KE N+KE + I+IEY G+E+ D+DDNDKK+LLP+Q FS
Sbjct: 464 QMDRDELPSGEEYSQLHFSETKEPNDKERSVIEIEY-GDENLDVDDNDKKTLLPNQQKFS 522
Query: 326 NL 327
+L
Sbjct: 523 HL 524
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451621|ref|XP_004143560.1| PREDICTED: protein spinster-like [Cucumis sativus] gi|449496531|ref|XP_004160158.1| PREDICTED: protein spinster-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/361 (58%), Positives = 259/361 (71%), Gaps = 36/361 (9%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAFCFVIFAYV--- 57
MGIPGWRI FHLVGLISVIVG+LV++FA D S+ R KD P K F + V
Sbjct: 159 MGIPGWRIAFHLVGLISVIVGLLVWVFANDPHFSEINGRDKDH-PRKPFWSEMMDLVKES 217
Query: 58 --------------------------------VRTIGFSHGLTVFLMTLFTIAGSLGGLF 85
+ +GFSH T FL TLF IA SLGG+F
Sbjct: 218 KSVIGIQSFQIIVSQGVAGSFPWSALSFAPMWLELVGFSHEKTGFLWTLFIIASSLGGIF 277
Query: 86 GGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145
GG +GD L KR PNSGRI+LSQISS S +P+AA+LLLVLPD+PST F+HGLVL IMG +
Sbjct: 278 GGRLGDILSKRFPNSGRIVLSQISSASAVPLAAILLLVLPDNPSTTFLHGLVLFIMGFSM 337
Query: 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
SWNAP TNNPIFAEIVP++SRTSIYALDRSFESIL+SFAPPVVG+LAQHV+GYKP KG+
Sbjct: 338 SWNAPATNNPIFAEIVPKKSRTSIYALDRSFESILSSFAPPVVGILAQHVYGYKPAAKGS 397
Query: 206 SNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQ 265
++S ++ETDRENA SLA+ALY AIG PM++CCFIYSFLYC+YPRDRER R+ ALIESEM
Sbjct: 398 TDSSQIETDRENAKSLARALYAAIGFPMSLCCFIYSFLYCSYPRDRERARMHALIESEML 457
Query: 266 KLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFS 325
LE +P +++SQ H SE+K+ ++K+ T++D+ Y E+S D D+D+K LL HQ+ S
Sbjct: 458 HLESSTSPLYEQDSQFHISEAKDFDDKDQTEVDLTYEIEDSLDFIDSDEKQLLNHQLIDS 517
Query: 326 N 326
+
Sbjct: 518 D 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255545694|ref|XP_002513907.1| carbohydrate transporter, putative [Ricinus communis] gi|223546993|gb|EEF48490.1| carbohydrate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/364 (57%), Positives = 256/364 (70%), Gaps = 40/364 (10%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAF----------- 49
MGIPGWR++FHLVG+ISV+VG+LVYLFA D SD + ++Q K+F
Sbjct: 159 MGIPGWRLSFHLVGIISVMVGVLVYLFANDPHFSDASMKNRNQDVSKSFFSEVKDLVREA 218
Query: 50 ------------------------CFVIFAYVVRTIGFSHGLTVFLMTLFTIAGSLGGLF 85
A + IGFSH T L+ LF IAGS GGLF
Sbjct: 219 KSVIKIPSFQIIVAQGITGSFPWSALTFSAMWLELIGFSHEKTALLIALFVIAGSFGGLF 278
Query: 86 GGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145
GG MGD L R PN+GRIIL+QISS S IP+AA+LLL LPDDPST FMHGLVLV+MGL I
Sbjct: 279 GGKMGDILSTRFPNAGRIILAQISSASAIPLAAILLLGLPDDPSTAFMHGLVLVVMGLFI 338
Query: 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
+WNAP TNNPIFAEIVPE+SRTS+YALDRSFESIL+SFAPP+VGLLAQ+V+GYKP+PKG+
Sbjct: 339 TWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPIVGLLAQYVYGYKPLPKGS 398
Query: 206 SNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQ 265
S S E+ TDR NAASLAKALYTAIGIPM +CCFIYSFLY TYPRDRER ++ALIE EM+
Sbjct: 399 SESEEIATDRRNAASLAKALYTAIGIPMALCCFIYSFLYRTYPRDRERAHMEALIELEME 458
Query: 266 KLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFS 325
+L D++P+ + N Q E+ +E + I++ Y GE+ D+DD+++K + Q+TFS
Sbjct: 459 QLILDDSPTSRGNCQVELVEA-----EEASVIEMVYEGEDCPDLDDDEEKMMPYRQLTFS 513
Query: 326 NLQH 329
NL
Sbjct: 514 NLSE 517
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224096193|ref|XP_002310569.1| predicted protein [Populus trichocarpa] gi|222853472|gb|EEE91019.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/361 (62%), Positives = 267/361 (73%), Gaps = 35/361 (9%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHK------------- 47
MGIPGWR+ FHLVG+ISVIVGI+V LFA D R SD S+AKDQ P
Sbjct: 159 MGIPGWRVAFHLVGIISVIVGIMVRLFANDPRFSDTNSKAKDQSPKSFISEVKYLMKEAK 218
Query: 48 ------AFCFVIFAYV---------------VRTIGFSHGLTVFLMTLFTIAGSLGGLFG 86
+F ++ V + IGFSH T FLMTLF +AGSLGGLFG
Sbjct: 219 SVIKIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFG 278
Query: 87 GWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS 146
G MGD L KR PNSGRI LSQISSGS IP+AAVLLLVLPDDPST F+HGLVL IMG CIS
Sbjct: 279 GKMGDVLAKRFPNSGRIFLSQISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCIS 338
Query: 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGAS 206
WN P TNNPIFAEIVP++SR S+YALDRSFES+L+SFAPP VG+LAQHV+GYK PK +
Sbjct: 339 WNGPATNNPIFAEIVPQKSRASVYALDRSFESVLSSFAPPTVGILAQHVYGYK-TPKKSL 397
Query: 207 NSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQK 266
+S++V TDRENAASLAKALYTAIGIPM +CCFIYSFLYCTYPRDR+R R+ ALIE EMQ+
Sbjct: 398 DSVQVITDRENAASLAKALYTAIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQ 457
Query: 267 LEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFSN 326
LE D++P +++++ + SE+ L+ +E T+ID++ G ES D DD+D K+LL Q+TFSN
Sbjct: 458 LEADDSPLREEHTRLNVSETNGLDGEERTEIDMKTGNNESIDFDDDDDKALLYRQLTFSN 517
Query: 327 L 327
L
Sbjct: 518 L 518
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099933|ref|XP_002334427.1| predicted protein [Populus trichocarpa] gi|222872190|gb|EEF09321.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/361 (62%), Positives = 267/361 (73%), Gaps = 35/361 (9%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHK------------- 47
MGIPGWR+ FHLVG+ISVIVGI+V LFA D R SD S+AKDQ P
Sbjct: 159 MGIPGWRVAFHLVGIISVIVGIMVRLFANDPRFSDTNSKAKDQSPKSFISEVKYLMKEAK 218
Query: 48 ------AFCFVIFAYV---------------VRTIGFSHGLTVFLMTLFTIAGSLGGLFG 86
+F ++ V + IGFSH T FLMTLF +AGSLGGLFG
Sbjct: 219 SVIKIPSFQIIVAQGVSGSFPWSALSFAPMWLELIGFSHEKTAFLMTLFVVAGSLGGLFG 278
Query: 87 GWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS 146
G MGD L KR PNSGRI LSQISSGS IP+AAVLLLVLPDDPST F+HGLVL IMG CIS
Sbjct: 279 GKMGDVLAKRFPNSGRIFLSQISSGSAIPLAAVLLLVLPDDPSTTFIHGLVLFIMGFCIS 338
Query: 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGAS 206
WN P TNNPIFAEIVP++SR S+YALDRSFES+L+SFAPP VG+LAQHV+GYK PK +
Sbjct: 339 WNGPATNNPIFAEIVPQKSRASVYALDRSFESVLSSFAPPTVGILAQHVYGYK-TPKKSL 397
Query: 207 NSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQK 266
+S++V TDRENAASLAKALYTAIGIPM +CCFIYSFLYCTYPRDR+R R+ ALIE EMQ+
Sbjct: 398 DSVQVITDRENAASLAKALYTAIGIPMALCCFIYSFLYCTYPRDRDRARMTALIELEMQQ 457
Query: 267 LEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTFSN 326
LE D++P +++++ + SE+ L+ +E T+ID++ G ES D DD+D K+LL Q+TFSN
Sbjct: 458 LEADDSPLREEHTRLNVSETNGLDGEERTEIDMKTGNNESIDFDDDDDKALLYRQLTFSN 517
Query: 327 L 327
L
Sbjct: 518 L 518
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459330|ref|XP_002285800.1| PREDICTED: purine efflux pump PbuE [Vitis vinifera] gi|302141945|emb|CBI19148.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 222/364 (60%), Positives = 262/364 (71%), Gaps = 39/364 (10%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKA------------ 48
MGI GWRI+FHLVGL+SVIVGILV LFA D DG ++A +Q P K+
Sbjct: 159 MGIAGWRISFHLVGLVSVIVGILVRLFANDPHFPDGAAKASNQVPSKSIWSEVKDLVQEA 218
Query: 49 --------FCFVIFAYV---------------VRTIGFSHGLTVFLMTLFTIAGSLGGLF 85
F ++ V + IGFSH T FL++LF IA SLGGLF
Sbjct: 219 KSVIKITSFQIIVAQGVTGSFPWSALSFAPMWLELIGFSHKKTAFLISLFVIAASLGGLF 278
Query: 86 GGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145
GG MGD L + P+SGRIIL+QISS S IP+AA+LLLVLPD+PST MHGLVL IMGLCI
Sbjct: 279 GGRMGDILSRIRPDSGRIILAQISSLSAIPLAALLLLVLPDNPSTAAMHGLVLFIMGLCI 338
Query: 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
SWNAP TNNPIFAEIVPE+SRTSIYALDRSFESIL+SFAPPVVG+LAQHV+GYKPVP+G+
Sbjct: 339 SWNAPATNNPIFAEIVPEKSRTSIYALDRSFESILSSFAPPVVGILAQHVYGYKPVPEGS 398
Query: 206 SNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQ 265
S S E+ TDR NAASLAKALYTAIGIPM +CC IYSFLY TYPRD+ER +++ALIESEMQ
Sbjct: 399 SESEEIATDRGNAASLAKALYTAIGIPMALCCLIYSFLYSTYPRDKERAQMEALIESEMQ 458
Query: 266 KLEKDN--APSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVT 323
++E DN A + +Q SE +N++ VT+ID Y G S D ++ND K LL HQ+T
Sbjct: 459 QMESDNICAGTEYPRAQLLESEDAYVNDRGVTEID--YEGRSSPDFEENDDKMLLHHQLT 516
Query: 324 FSNL 327
FSNL
Sbjct: 517 FSNL 520
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437244|ref|XP_004136402.1| PREDICTED: uncharacterized protein LOC101220496 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/363 (58%), Positives = 250/363 (68%), Gaps = 39/363 (10%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTR-CSDGKSRAKDQKPHKAFC--FVIFAYV 57
MGIPGWRI FHLVGLISVIVGILV LFA+D DG D P +F + A
Sbjct: 159 MGIPGWRIAFHLVGLISVIVGILVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEVKVLARE 218
Query: 58 VRTI---------------------------------GFSHGLTVFLMTLFTIAGSLGGL 84
+++ GFSH T FLM +F I SLGGL
Sbjct: 219 AKSVMKIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGL 278
Query: 85 FGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144
FGG MGD L R PNSGRIIL+QISSGS IP+AAVLLL LPD PST +HGLVL+I+G
Sbjct: 279 FGGKMGDILSTRFPNSGRIILAQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIVGFF 338
Query: 145 ISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKG 204
ISWNAP TNNPIFAEIVPE+SRTS+YALDRSFESIL+SFAPPVVG+LAQHV+GYKPV KG
Sbjct: 339 ISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKG 398
Query: 205 ASNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEM 264
+S S E+ TDRENAASLA+ALYTAIGIP+ +CCFIYSFLYCTYPRDRER R++ LIESEM
Sbjct: 399 SSESEEIATDRENAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEM 458
Query: 265 QKLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTF 324
Q++E + +PS SQ H + S +L + T ID++ E D+D+K+ L Q+TF
Sbjct: 459 QQIESERSPSGAGYSQVHLAGSDDLYTTDRTVIDMD---YEDDLDFDDDEKTALYRQLTF 515
Query: 325 SNL 327
SN
Sbjct: 516 SNF 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449502871|ref|XP_004161766.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101220496 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/363 (58%), Positives = 250/363 (68%), Gaps = 39/363 (10%)
Query: 1 MGIPGWRITFHLVGLISVIVGILVYLFAKDTR-CSDGKSRAKDQKPHKAFC--FVIFAYV 57
MGIPGWRI FHLVGLISVIVGILV LFA+D DG D P +F + A
Sbjct: 159 MGIPGWRIAFHLVGLISVIVGILVRLFAQDPHFLDDGIKIGNDVPPQSSFWSEVKVLARE 218
Query: 58 VRTI---------------------------------GFSHGLTVFLMTLFTIAGSLGGL 84
+++ GFSH T FLM +F I SLGGL
Sbjct: 219 AKSVMKIPSFQIIVAQGVTGSFPWSALSFATMWLELKGFSHQKTAFLMGMFVIGNSLGGL 278
Query: 85 FGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144
FGG MGD L R PNSGRIIL+QISSGS IP+AAVLLL LPD PST +HGLVL+I G+
Sbjct: 279 FGGKMGDILSTRFPNSGRIILAQISSGSGIPLAAVLLLFLPDGPSTAVIHGLVLIIXGVF 338
Query: 145 ISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKG 204
ISWNAP TNNPIFAEIVPE+SRTS+YALDRSFESIL+SFAPPVVG+LAQHV+GYKPV KG
Sbjct: 339 ISWNAPATNNPIFAEIVPEKSRTSVYALDRSFESILSSFAPPVVGILAQHVYGYKPVQKG 398
Query: 205 ASNSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEM 264
+S S E+ TDRENAASLA+ALYTAIGIP+ +CCFIYSFLYCTYPRDRER R++ LIESEM
Sbjct: 399 SSESEEIATDRENAASLARALYTAIGIPLALCCFIYSFLYCTYPRDRERARMEVLIESEM 458
Query: 265 QKLEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKKSLLPHQVTF 324
Q++E + +PS SQ H + S +L + T ID++ E D+D+K+ L Q+TF
Sbjct: 459 QQIESERSPSGAGYSQVHLAGSDDLYTTDRTVIDMD---YEDDLDFDDDEKTALYRQLTF 515
Query: 325 SNL 327
SN
Sbjct: 516 SNF 518
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356528477|ref|XP_003532829.1| PREDICTED: uncharacterized protein LOC100787140 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 205/340 (60%), Positives = 238/340 (70%), Gaps = 35/340 (10%)
Query: 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAF------------ 49
GIPGWRI FHLV LISVIVGILV LFA D S A +Q +K+F
Sbjct: 160 GIPGWRIAFHLVALISVIVGILVRLFANDPHYSKSDDTATNQAQNKSFYSEMKDLMKEAK 219
Query: 50 ------CFVI----------------FAYV-VRTIGFSHGLTVFLMTLFTIAGSLGGLFG 86
F I FA + + IGFSH T L TLF +A S G LFG
Sbjct: 220 SVIRIPTFQIIVAQGVFGSFPWSGLSFATLWLELIGFSHVTTATLWTLFIVAASFGSLFG 279
Query: 87 GWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS 146
GWMGD L RLPN+GRIILSQIS+GSVIP+AA+LLL LPDD ST FMHGLVLVIMG +
Sbjct: 280 GWMGDFLSLRLPNAGRIILSQISAGSVIPLAAILLLGLPDDSSTAFMHGLVLVIMGFTSA 339
Query: 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGAS 206
WNAP TNNPIFAEIVPE+SRT+IYALD SFESILASFAPP+VGLLAQHV+GY+P+P G+S
Sbjct: 340 WNAPATNNPIFAEIVPEKSRTAIYALDCSFESILASFAPPIVGLLAQHVYGYRPIPSGSS 399
Query: 207 NSLEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQK 266
+S+E+ETDRENAASLAKALYTAI IPMTIC +YS LYCTYPRDRER R+ +L ESEMQ+
Sbjct: 400 DSVEIETDRENAASLAKALYTAIIIPMTICVSVYSLLYCTYPRDRERARMISLAESEMQQ 459
Query: 267 LEKDNAPSLKKNSQRHFSESKELNEKEVTDIDIEYGGEES 306
LE ++ + + ES +N+KE + DI+Y EES
Sbjct: 460 LEVEDGTKEEYCEIHEYLESNVVNDKESSKFDIDYPREES 499
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| TAIR|locus:2184163 | 488 | AT5G10190 "AT5G10190" [Arabido | 0.638 | 0.430 | 0.633 | 7.6e-72 | |
| TAIR|locus:2194749 | 490 | UNE2 "AT1G78130" [Arabidopsis | 0.629 | 0.422 | 0.623 | 1.2e-71 | |
| TAIR|locus:2115430 | 489 | AT4G36790 "AT4G36790" [Arabido | 0.635 | 0.427 | 0.323 | 2.6e-28 | |
| TAIR|locus:2046313 | 473 | AT2G18590 "AT2G18590" [Arabido | 0.604 | 0.420 | 0.289 | 1.6e-22 |
| TAIR|locus:2184163 AT5G10190 "AT5G10190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 7.6e-72, Sum P(2) = 7.6e-72
Identities = 133/210 (63%), Positives = 159/210 (75%)
Query: 61 IGFSHGLTVFLMTLFTIAXXXXXXXXXXXXXXXVKRLPNSGRIILSQISSGSXXXXXXXX 120
IGFSH T L+TLFTI+ K+ PN GRI LSQ+SSGS
Sbjct: 252 IGFSHKTTAVLVTLFTISCSLGGLFGGYMGDTLAKKFPNGGRIFLSQVSSGSAIPLAAIL 311
Query: 121 XXXXXXXXSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESIL 180
ST F HGLVLVIMGLCISWN TN PIFAEIVPER+RTSIYALDRSFESIL
Sbjct: 312 LIGLPDDPSTAFSHGLVLVIMGLCISWNGAATNGPIFAEIVPERARTSIYALDRSFESIL 371
Query: 181 ASFAPPVVGLLAQHVHGYKPVPKGASNSLEVETDRENAASLAKALYTAIGIPMTICCFIY 240
ASFAPP+VG+LAQ+++GYKP+P+G+++S++++TDR NAASLAKALYT+IGIPM ICC IY
Sbjct: 372 ASFAPPIVGMLAQNIYGYKPIPEGSTSSVKIDTDRANAASLAKALYTSIGIPMVICCTIY 431
Query: 241 SFLYCTYPRDRERVRIDALIESEMQKLEKD 270
SFLYCTYPRDR+R ++ ALIESEMQ+L ++
Sbjct: 432 SFLYCTYPRDRDRAKMQALIESEMQQLNEE 461
|
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| TAIR|locus:2194749 UNE2 "AT1G78130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 129/207 (62%), Positives = 155/207 (74%)
Query: 61 IGFSHGLTVFLMTLFTIAXXXXXXXXXXXXXXXVKRLPNSGRIILSQISSGSXXXXXXXX 120
IGFSHG T FLM LF A RLPNSGRIIL+QISS S
Sbjct: 255 IGFSHGKTAFLMGLFVAASSLGGLFGGKMGDFLSTRLPNSGRIILAQISSASAIPLAAIL 314
Query: 121 XXXXXXXXSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESIL 180
ST +HGL+LV++GL +SWNAP TNNPIFAEIVPE+SRTS+YALD+SFESIL
Sbjct: 315 LLVLPDDPSTAAIHGLILVLLGLFVSWNAPATNNPIFAEIVPEKSRTSVYALDKSFESIL 374
Query: 181 ASFAPPVVGLLAQHVHGYKPVPKGASNSLEVETDRENAASLAKALYTAIGIPMTICCFIY 240
+SFAPP+VG+LAQHV+GYKP+P+G+S S E+ TDRENAASLAKALYT+IG+PM CCFIY
Sbjct: 375 SSFAPPIVGILAQHVYGYKPIPEGSSRSTEIATDRENAASLAKALYTSIGLPMAACCFIY 434
Query: 241 SFLYCTYPRDRERVRIDALIESEMQKL 267
SFLY +YP DR+R R++A I+SEM++L
Sbjct: 435 SFLYRSYPLDRDRARMEAFIDSEMREL 461
|
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| TAIR|locus:2115430 AT4G36790 "AT4G36790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 69/213 (32%), Positives = 107/213 (50%)
Query: 52 VIFAYVVRTIGFSHGLTVFLMTLFTIAXXXXXXXXXXXXXXXVKRLPNSGRIILSQISSG 111
V F IGF H T L+ +F + PNSGR++ +Q S+
Sbjct: 280 VFFTMWFELIGFDHNQTAALLGVFATGGAIGTLMGGIIADKMSRIYPNSGRVMCAQFSAF 339
Query: 112 SXXXXXXXXXXXXXXXXSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYA 171
S+ + + L +MGL I+W N P+FAE+VP R RT IYA
Sbjct: 340 MGIPFSIILLKVIPQSTSSYSIFSITLFLMGLTITWCGSAVNAPMFAEVVPPRHRTMIYA 399
Query: 172 LDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSLEVETDRENAASLAKALYTAIGI 231
DR+FE +SFA P+VG+L++ + GY +G + L+ + RE A +L+K L + + +
Sbjct: 400 FDRAFEGSFSSFAAPLVGILSEKLFGYDS--RGI-DPLKGSSVRE-ADALSKGLLSMMAV 455
Query: 232 PMTICCFIYSFLYCTYPRDRERVRIDALIESEM 264
P +CC Y+ L+ + +DRE +I + E+EM
Sbjct: 456 PFGLCCLCYTPLHFVFQKDRENAKIASSKETEM 488
|
|
| TAIR|locus:2046313 AT2G18590 "AT2G18590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 1.6e-22, Sum P(2) = 1.6e-22
Identities = 59/204 (28%), Positives = 94/204 (46%)
Query: 61 IGFSHGLTVFLMTLFTIAXXXXXXXXXXXXXXXVKRLPNSGRIILSQISSGSXXXXXXXX 120
IGF H L +F + PNSGR+I +Q S
Sbjct: 274 IGFDHNQAALLNGIFATGQAIGSLVGGIIADKMSRVFPNSGRLICAQFSVFMGAMFSIVL 333
Query: 121 XXXXXXXXSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESIL 180
++ ++ + L +MGL I+W P N+PI AEIVP + RT +YA DR+ E
Sbjct: 334 LRMIPQSVNSFYIFLVTLFLMGLTITWCGPAINSPILAEIVPAKHRTMVYAFDRALEVTF 393
Query: 181 ASFAPPVVGLLAQHVHGYKPVPKGASNSLEVETDRENAASLAKALYTAIGIPMTICCFIY 240
+SF P+VG++++ + G+ KG + V A +L K + + +P +CC Y
Sbjct: 394 SSFGAPLVGIMSEKLFGFDA--KGIDH---VNDSGREAEALGKGIMWMMALPFGLCCLCY 448
Query: 241 SFLYCTYPRDRERVRIDALIESEM 264
+ L+ + +DR+ R + E EM
Sbjct: 449 TPLHFLFRKDRKIDRTTSSREVEM 472
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00010917001 | SubName- Full=Chromosome chr7 scaffold_294, whole genome shotgun sequence; (521 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-10 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-09 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 3e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-05 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-05 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 7e-05 | |
| TIGR00881 | 379 | TIGR00881, 2A0104, phosphoglycerate transporter fa | 8e-05 | |
| COG2271 | 448 | COG2271, UhpC, Sugar phosphate permease [Carbohydr | 0.002 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 0.002 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 0.004 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 39/208 (18%), Positives = 75/208 (36%), Gaps = 37/208 (17%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHK----------------- 47
GWR F ++ +++++ +L L + + ++ P
Sbjct: 149 GWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLL 208
Query: 48 ----AFCFVIFAYV------VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97
F F FA + +G S L L+ L + G++G L G L RL
Sbjct: 209 LALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGR----LSDRL 264
Query: 98 PNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIF 157
R++L ++ I A L L L + + L+++G P N +
Sbjct: 265 GRRRRLLL-----ALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNA-LV 318
Query: 158 AEIVPERSRTSIYALDRSFESILASFAP 185
+++ P+ R + L + S+ + P
Sbjct: 319 SDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 40/204 (19%), Positives = 78/204 (38%), Gaps = 37/204 (18%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAFCFVIFA--------- 55
GWR F ++ ++ +++ +L+ + A F + +
Sbjct: 151 GWRWLFLILAILGLLLALLLLFLLRLLLLL-------------ALAFFLLSFGYYGLLTY 197
Query: 56 ---YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGS 112
Y+ +G S L++LF + G LG L GG + D L +R + G
Sbjct: 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL--------LLIGL 249
Query: 113 VIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYAL 172
++ +LLL L + + L+++G + + P +E+ P +R + L
Sbjct: 250 LLAALGLLLLALAPSLALLL---VALLLLGFGLGFAFPALLTLA-SELAPPEARGTASGL 305
Query: 173 DRSFESILASFAPPVVGLLAQHVH 196
+F S+ + P + GLL
Sbjct: 306 FNTFGSLGGALGPLLAGLLLDTGG 329
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 48 AFCFVIFAYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQ 107
+ Y+ +G S L+T F++ +L G + D +R R++L
Sbjct: 14 LLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRR-----RVLL-- 66
Query: 108 ISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRT 167
++ A LLL+L + ++ V+ GL P + A+ P R
Sbjct: 67 ---IGLLLFALGLLLLLFASSLWLLL--VLRVLQGLGGGALFPAAAA-LIADWFPPEERG 120
Query: 168 SIYALDRSFESILASFAPPVVGLLAQHV 195
L + + A+ P + GLLA
Sbjct: 121 RALGLLSAGFGLGAALGPLLGGLLASLF 148
|
Length = 346 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-05
Identities = 27/143 (18%), Positives = 51/143 (35%), Gaps = 13/143 (9%)
Query: 52 VIFAYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSG 111
+ +G S +++ F++ +LG L G++ D R +L
Sbjct: 20 PALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF------GRRRVL----LL 69
Query: 112 SVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYA 171
++ A LL+ + + ++GL P + AE P + R
Sbjct: 70 GLLLFALGSLLLAFASSLWLLL--VGRFLLGLGGGALYPAAAA-LIAEWFPPKERGRALG 126
Query: 172 LDRSFESILASFAPPVVGLLAQH 194
L + + A P + GLLA+
Sbjct: 127 LFSAGFGLGALLGPLLGGLLAES 149
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 38/228 (16%), Positives = 75/228 (32%), Gaps = 44/228 (19%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKP-----------HKAFCFVI 53
GWRI F LV + V++G+ + ++T + + K H+ +
Sbjct: 168 GWRIPF-LVSAVLVLIGLYLRRNLEET--PVFEKAQEKHKKKRGPIAETLTKHRKPFLLG 224
Query: 54 FAYVVRTIGFSHGLTVFLMT-----------LFTIAGSLGGLF-------GGWMGDTLVK 95
V+ T + +T +L T + L + G + D + +
Sbjct: 225 LGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGR 284
Query: 96 RLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS-WNAPTTNN 154
R I + + AV LL+ D + + +++ M L + P
Sbjct: 285 RP--------VLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM--G 334
Query: 155 PIFAEIVPERSRTSIYALDRSFESIL-ASFAPPVVGLLAQHVHGYKPV 201
E+ P R + +L + + FAP + L + +
Sbjct: 335 SFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 15/147 (10%)
Query: 51 FVIFAYVVRTI-GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQIS 109
+F YV G +++ F + LG L G +G R+ L +
Sbjct: 231 VALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-------KRMALMTGA 283
Query: 110 SGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS-WNAPTTNNPIFAEIVPERSRTS 168
I + + +LV+ P + ++ +G+ N P + VP
Sbjct: 284 ----IFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVP--QGTLLQRRVPAELLGR 337
Query: 169 IYALDRSFESILASFAPPVVGLLAQHV 195
++ S + G LA H+
Sbjct: 338 VFGAQFSLSHAAWPLGLILAGPLADHL 364
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
| >gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 47/242 (19%), Positives = 80/242 (33%), Gaps = 65/242 (26%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKP------------------- 45
W F + G+I++IV ++ +L +D+ S G A++
Sbjct: 148 SWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQI 207
Query: 46 ------------HKAFCFVIFAYVVRTI-------------GFSHGLTVFLMTLFTIAGS 80
+ + +V F YVVRT GFS + TL+ + G
Sbjct: 208 FLQYVLLNKVLWYISLGYV-FVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGL 266
Query: 81 LGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVI 140
+G L GW+ D L R L+ +I V L +P M + L
Sbjct: 267 VGTLLAGWLSDKLFNG----RRGPLAVFFMALIIVSLLVYWLNPAANP---LMDLICLFA 319
Query: 141 MGLCISWNAPTTNNPIF------AEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194
+G + P +E+ P+++ + F + A +G LA
Sbjct: 320 LGFLV-------YGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG 372
Query: 195 VH 196
Sbjct: 373 FG 374
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 379 |
| >gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 51/185 (27%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCS-----------DGKSRAKDQKPHK------ 47
GWR F+ G+I++IV +++ +D S D +++K ++
Sbjct: 183 GWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQ 242
Query: 48 -------------AFCFV-IFAYVVRTI-------------GFSHGLTVFLMTLFTIAGS 80
+F YVVR GFS + ++LF +AG
Sbjct: 243 IFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGL 302
Query: 81 LGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVI 140
G L GW+ D +L R ++ I + I A L+L + + ++L I
Sbjct: 303 PGTLLAGWLSD----KLFKGRRGPMALIFM---LLITASLVLYWLAPNGSYLLDAILLFI 355
Query: 141 MGLCI 145
+G I
Sbjct: 356 IGFLI 360
|
Length = 448 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.002
Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 33/160 (20%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHK------------AFC-- 50
GWR TF + +++++ +L++ + S F
Sbjct: 165 GWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFM 224
Query: 51 ---FVIFAYVVRTI----GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRI 103
F ++ Y+ + GFS ++ F IAG +G L GG + D +R
Sbjct: 225 TGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRR------- 277
Query: 104 ILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGL 143
+ I++ ++ +A + L P+ +L + G
Sbjct: 278 --ALIAALLLLALALLALTFTGASPALAL---ALLFLWGF 312
|
Length = 394 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 50/283 (17%), Positives = 96/283 (33%), Gaps = 65/283 (22%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKD----TRCSDGKSRAKDQ----KPHKAFCFVIFAY 56
G+ + ++ +++V+ ++ + K+ K +D ++ ++ Y
Sbjct: 172 GYFLAALIIAILAVVGFLICFAGTKERVSVPPEQKEKVSLRDMFKALFKNRPLLILLLLY 231
Query: 57 VVRTIG--FSHGLTVF--------------LMTLFTIAGSLGGLFGGWMGDTLVKRLPNS 100
++ + +GL ++ L+ + TIA LG W L KR
Sbjct: 232 LLNALAMAVRNGLLLYYFTYVLGNAGLFSVLLLIGTIAAILGAPLWPW----LAKRF--- 284
Query: 101 GRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEI 160
G+ + I VLL LP F+ +VL +GL ++ P + A++
Sbjct: 285 GKKRTFLLGMLLAA-IGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWA---MLADV 340
Query: 161 VP-------ERSRTSIYALDRSFESILAS-FAPPVVGLLAQHVHGYKP----VPKGASNS 208
V +R ++L SF L +VGLL GY A +
Sbjct: 341 VDYGEWKTGKRREGITFSL-YSFADKLGGALGGAIVGLLLAFA-GYVANATAQSAAALSG 398
Query: 209 LEVETDRENAASLAKALYTAIGIPMTICCFIYSFLYCTYPRDR 251
+ + L+T I + + + YP
Sbjct: 399 I-------------RLLFTLIPA---VLALLALLILRFYPLTD 425
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.76 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.74 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.68 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.67 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.67 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.66 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.65 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.65 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.64 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.64 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.64 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.64 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.63 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.62 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.62 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.62 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.62 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.61 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.61 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.6 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.6 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.6 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.59 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.59 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.59 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.59 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.57 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.57 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.57 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.57 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.56 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.56 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.56 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.56 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.56 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.56 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.55 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.54 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.54 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.54 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.54 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.54 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.54 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.53 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.53 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.53 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.52 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.52 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.52 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.51 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.51 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.5 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.5 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.5 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.49 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.49 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.48 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.47 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.47 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.47 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.47 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.46 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.46 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.44 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.44 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.44 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.44 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.44 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.43 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.43 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.43 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.43 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.43 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.42 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.42 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.42 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.42 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.41 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.41 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.41 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.41 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.4 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.4 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.4 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.4 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.39 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.39 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.38 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.38 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.38 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.38 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.37 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.37 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.37 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.37 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.37 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.37 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.36 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.36 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.35 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.35 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.34 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.34 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.34 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.34 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.34 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.34 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.33 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.33 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.32 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.31 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.31 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.31 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.31 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.31 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.3 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.29 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.29 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.28 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.28 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.28 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.28 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.27 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.27 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.27 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.27 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.26 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.26 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.26 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.25 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.25 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.25 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.25 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.25 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.24 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.24 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.24 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.24 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.23 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.23 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.23 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.23 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.22 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.22 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.22 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.22 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.22 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.21 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.21 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.2 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.2 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.2 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.19 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.18 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.18 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.17 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.17 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.16 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.14 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.14 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.12 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.12 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.09 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.05 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.05 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.04 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.04 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.04 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.0 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.99 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.98 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.98 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.97 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.94 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.92 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.92 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.92 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.91 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.9 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.87 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.86 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.85 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.81 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.8 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.75 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.74 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.74 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.74 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.72 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.68 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.67 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 98.65 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.64 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.64 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.61 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.6 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.59 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.55 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.51 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.49 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.48 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.44 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.44 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.43 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.42 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.41 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.4 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.38 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.32 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.31 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.3 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.1 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.03 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.98 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.96 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.92 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.85 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.73 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.66 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.64 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.57 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.52 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.51 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.49 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.48 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.48 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.43 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.39 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.33 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 96.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.84 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.52 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.5 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.47 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 96.4 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 96.39 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.32 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.31 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.29 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 96.14 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.12 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.07 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.69 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 95.56 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 95.54 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 95.54 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 93.28 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 93.16 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.83 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 92.41 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 91.79 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.75 | |
| PF03547 | 385 | Mem_trans: Membrane transport protein; InterPro: I | 91.0 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 88.36 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 86.92 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 86.04 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 85.84 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 85.7 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 85.69 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 84.6 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 83.87 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 83.42 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 83.21 | |
| COG5336 | 116 | Uncharacterized protein conserved in bacteria [Fun | 81.85 |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.5e-17 Score=137.20 Aligned_cols=184 Identities=18% Similarity=0.299 Sum_probs=126.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-c----cccCCcchhHH-------------HHHH----HHHHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS-R----AKDQKPHKAFC-------------FVIF----AYVVR 59 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~-~----~~~~~~~~~~~-------------f~~~----~~~~~ 59 (329)
+++|||++|++.++++++..+..+..+| |+....+. . ..+..++++++ |..+ |++.+
T Consensus 162 ~~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~ 240 (394)
T COG2814 162 QLFGWRATFLAIAVLALLALLLLWKLLP-PSEISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLES 240 (394)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHH
Confidence 4689999999999999999999998888 22221111 1 22344556655 2222 88888
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
..|++....++....++++.++|++++|++.|| +.|+ .+ ...........+.+.... .+.+......+
T Consensus 241 v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~-----~l---~~~~~l~a~~~l~l~~~~---~~~~~~~~~~~ 308 (394)
T COG2814 241 VAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRR-----AL---IAALLLLALALLALTFTG---ASPALALALLF 308 (394)
T ss_pred ccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchh-----HH---HHHHHHHHHHHHHHHHhc---chHHHHHHHHH
Confidence 999999999999999999999999999999999 6665 22 222222222222222222 22344445555
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
+.|+....... ..+...++. .++.++.+.+++....|+|.++|..++|.+.++ .++...
T Consensus 309 ~wg~a~~~~~~-~~~~~~a~~-~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~-~g~~~~ 367 (394)
T COG2814 309 LWGFAFSPALQ-GLQTRLARL-APDAADLAGSLNVAAFNLGIALGAALGGLVLDA-LGYAAT 367 (394)
T ss_pred HHHHHhhhhhh-HHHHHhccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hchHHH
Confidence 56666654333 344444443 356799999999999999999999999999998 565553
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=135.00 Aligned_cols=188 Identities=24% Similarity=0.414 Sum_probs=136.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCC----------CC---cccc-C------------CcchhHH-----
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKD-TRCSDG----------KS---RAKD-Q------------KPHKAFC----- 50 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~----------~~---~~~~-~------------~~~~~~~----- 50 (329)
+++||..|++-+++++++++++++..+| |+...- .+ ++++ . ++||.+|
T Consensus 181 ~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a 260 (448)
T COG2271 181 HGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALA 260 (448)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHH
Confidence 5699999999999999999999999988 543210 00 0011 0 2345555
Q ss_pred --HHHH---------HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhccCCchhHHHHHHHHHHHHHH
Q 041066 51 --FVIF---------AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL--VKRLPNSGRIILSQISSGSVIPI 116 (329)
Q Consensus 51 --f~~~---------~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~--g~r~~~~~~~~~~~~~~~~~~~~ 116 (329)
|.++ |.|+ +..|+|...+++..+.+-++++.|+++.||++||+ |||.+ ..+...+.+.+
T Consensus 261 ~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p-------~~~i~~~~i~~ 333 (448)
T COG2271 261 NVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP-------MALIFMLLITA 333 (448)
T ss_pred HHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch-------HHHHHHHHHHH
Confidence 1111 7666 88999999999999999999999999999999996 45542 22333333334
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhhh
Q 041066 117 AAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQHV 195 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~~ 195 (329)
+.+.+...+.. +.++..++++++|+....... +.-....|..|++-.|++.|+...+.++ |.+.+....|++.|.
T Consensus 334 ~~~~~w~~~~~--~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~- 409 (448)
T COG2271 334 SLVLYWLAPNG--SYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT- 409 (448)
T ss_pred HHHHHHcCCCc--cHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec-
Confidence 44444443332 456778888888888776554 5667788999999999999999999999 778888889999888
Q ss_pred cCCCCC
Q 041066 196 HGYKPV 201 (329)
Q Consensus 196 ~~~~~~ 201 (329)
.+|...
T Consensus 410 ~gW~g~ 415 (448)
T COG2271 410 WGWDGG 415 (448)
T ss_pred CCCcch
Confidence 566664
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-15 Score=129.05 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=124.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc---c------cCCcchhHH------HHH------H----HHH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA---K------DQKPHKAFC------FVI------F----AYV 57 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~---~------~~~~~~~~~------f~~------~----~~~ 57 (329)
.+|||+.|++.+++.++..+..++++++|+++..+.+. . +..+++.++ +.. . +.+
T Consensus 152 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (377)
T TIGR00890 152 LEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY 231 (377)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46899999999988888887777777664332111100 0 112233333 000 0 445
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 58 VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
.+++|.+..+.+.+.+...++.++++++.|+++||++||+ .+. ...+...++.+.+...+.. ........
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 301 (377)
T TIGR00890 232 GQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQK-----TMS---IVFGISAVGMAAMLFIPML--NDVLFLAT 301 (377)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hhh---HHHHHHHHHHHHHHHcccc--hhHHHHHH
Confidence 5778999999999999999999999999999999999987 322 1212222222222222211 12223334
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.++.+++.+...+ ...+++.|.+|+++|+++.|+.+...++|+.++|.+.|.+.+. .+|..
T Consensus 302 ~~~~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~ 362 (377)
T TIGR00890 302 VALVFFTWGGTIS-LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE-IGFEY 362 (377)
T ss_pred HHHHHHHhccchh-ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh-hchhh
Confidence 4556666665555 6678899999999999999999999999999999999999887 34444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-15 Score=132.98 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=96.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLV--KRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
|.|.++.|++..+++++.++.+++.+++++++|+++||.. +++ ... +....+...+..+.... .. ..+
T Consensus 265 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-----~~~-~~~~~~~~~l~~ll~~~---~~-~~~ 334 (455)
T TIGR00892 265 VPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHV-----QYL-FSFALLFNGLTHLLCAL---AG-DYT 334 (455)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHH-----HHH-HHHHHHHHHHHHHHHHH---hc-hHH
Confidence 5555678999999999999999999999999999999742 222 111 11111111111111111 12 233
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+..++.|++.+...+ ...+++.|.+|++++++++|+++...++|+++||.+.|.+.+..++|..
T Consensus 335 ~~~i~~~~~G~~~g~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~ 401 (455)
T TIGR00892 335 GLVIYCIFFGLSFGSVGA-LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKY 401 (455)
T ss_pred HHHHHHHHHHHHhchHHH-HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcch
Confidence 455566777887776666 6788889999999999999999999999999999999999987555555
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-15 Score=132.75 Aligned_cols=181 Identities=19% Similarity=0.194 Sum_probs=120.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCC--ccccC-----Cc---chhH---H---HHH----------H
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTR-CSDGKS--RAKDQ-----KP---HKAF---C---FVI----------F 54 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~-~~~~~~--~~~~~-----~~---~~~~---~---f~~----------~ 54 (329)
+.++||+.|++.+++.++..++..+++||+. ....+. +.++. .+ .+.. + +.. .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (406)
T PRK11551 164 GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWL 243 (406)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999988776666666666677632 211110 01000 01 1111 1 110 0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.++.|++..+.+.+.+...++.+++.++.|++.||+|+|+ .+. ...+....+...+... +. .+.+
T Consensus 244 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~---~~~~~~~~~~~~~~~~---~~-~~~~ 311 (406)
T PRK11551 244 PSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRR-----VVL---LIYAGILASLAALAAA---PS-FAGM 311 (406)
T ss_pred HHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHH---HHHHHHHHHHHHHHhc---Cc-HHHH
Confidence 6777778999999999999999999999999999999999887 332 1212222222222221 12 2234
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+...++|+.++|.+.|.+.+..
T Consensus 312 ~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 312 LLAGFAAGLFVVGGQS-VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 4455556666555455 67788999999999999999999999999999999999998863
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-14 Score=129.47 Aligned_cols=188 Identities=15% Similarity=0.280 Sum_probs=112.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-CCCC---CCC-----------Ccccc-----------CCcchhHH------H
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKD-TRCS---DGK-----------SRAKD-----------QKPHKAFC------F 51 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~---~~~-----------~~~~~-----------~~~~~~~~------f 51 (329)
.|||+.|++.+++.++..++.++++|| |+.. +.. .+..+ ..+++.+| +
T Consensus 184 ~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 263 (452)
T PRK11273 184 NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANV 263 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHH
Confidence 489999999988888877777777776 2210 000 00000 11234444 0
Q ss_pred H-H-----H----HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH
Q 041066 52 V-I-----F----AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL 120 (329)
Q Consensus 52 ~-~-----~----~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
. . + |.|+ +..|++..+++.+..+..++.+++.+++|+++||+++++.. .... ....+ ..++...
T Consensus 264 ~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~---~~~~-~~~~l-~~~~~~~ 338 (452)
T PRK11273 264 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG---ATGV-FFMTL-VTIATIV 338 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc---hHHH-HHHHH-HHHHHHH
Confidence 0 0 0 6666 45799999999998888999999999999999999543210 1111 11111 1111122
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhh-HHHHHHHHhhhhcCCC
Q 041066 121 LLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASF-APPVVGLLAQHVHGYK 199 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~-~~~~~g~l~~~~~~~~ 199 (329)
+.... ... .+...+.++..|.+...... ....+..|.+|++.+|+++|+.++..++|+++ +|.+.|.+.|.. +|.
T Consensus 339 ~~~~~-~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~-g~~ 414 (452)
T PRK11273 339 YWLNP-AGN-PTVDMACMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWD 414 (452)
T ss_pred HHHhc-ccC-hHHHHHHHHHHHHHHHhHHH-HHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh-cch
Confidence 22211 111 12223334444443322122 23456779999999999999999999998765 799999999984 444
Q ss_pred C
Q 041066 200 P 200 (329)
Q Consensus 200 ~ 200 (329)
.
T Consensus 415 ~ 415 (452)
T PRK11273 415 G 415 (452)
T ss_pred H
Confidence 4
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=132.13 Aligned_cols=131 Identities=12% Similarity=0.188 Sum_probs=88.4
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.++ +.+|++..+.++......++.+++.++.|+++||+|||+ .+. .+..+..+.+...+.... .. ....
T Consensus 274 p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~-----~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~ 344 (490)
T PRK10642 274 PSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRP-----FVI--LGSVALFVLAIPAFILIN-SN-VIGL 344 (490)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH--HHHHHHHHHHHHHHHHHh-CC-CHHH
Confidence 6666 568999888888888888999999999999999999997 332 111111111111111111 11 1233
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+.+..++.+++.+...+ ....++.|.+|++.||++.|+.+....+++.++|.+.+++.+..
T Consensus 345 ~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~ 405 (490)
T PRK10642 345 IFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST 405 (490)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555555444344 46777889999999999999876667788899999999988764
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-14 Score=127.14 Aligned_cols=184 Identities=17% Similarity=0.250 Sum_probs=120.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC--ccccCCcchhHH------HHH----------H-HHHHHHhC
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS--RAKDQKPHKAFC------FVI----------F-AYVVRTIG 62 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~--~~~~~~~~~~~~------f~~----------~-~~~~~~~g 62 (329)
+++|||++|++.++++++..++.++.+|++++++... +..+..+++.++ +.. . |++.+..|
T Consensus 158 ~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 237 (390)
T PRK03545 158 QYLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAG 237 (390)
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3579999999999888777766666666632211111 011122334433 110 0 44445689
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
++..+.+.+.+...++.++++++.|+++||+++|. +.. ...+.. .....+.... . ..+.+.++.++.|
T Consensus 238 ~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~~~---~~~~~~-~~~~~l~~~~--~-~~~~~~~~~~l~g 305 (390)
T PRK03545 238 LSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF-----LLI---AIALLL-VCLLLLLPAA--N-SEWHLSVLSIFWG 305 (390)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----HHH---HHHHHH-HHHHHHHHHh--c-hHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765 222 111111 1111111111 1 2334555666777
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
++.+...+ .....+.+..| +.+++++|+++...++|..+||.+.|.+.+. .++..
T Consensus 306 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~-~g~~~ 360 (390)
T PRK03545 306 IAIMCIGL-AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH-LGLSS 360 (390)
T ss_pred HHHhcchH-HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhH
Confidence 77666555 56677777766 5789999999999999999999999999987 44444
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-16 Score=132.73 Aligned_cols=195 Identities=38% Similarity=0.690 Sum_probs=141.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccC---Ccc----hhHH------------HHHH------------
Q 041066 6 WRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQ---KPH----KAFC------------FVIF------------ 54 (329)
Q Consensus 6 Wr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~---~~~----~~~~------------f~~~------------ 54 (329)
|||.|+..++++++++++.+++++||++....+..... .+. +.++ |.+.
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww 266 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWW 266 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchh
Confidence 99999999999999999999999998764322211111 111 1111 2211
Q ss_pred -----HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 -----AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 -----~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
++..+..|.+..+.-++..+..+++.+|.+++|.++||+.++.++..+.....+.+.++...+..++...+....
T Consensus 267 ~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~ 346 (493)
T KOG1330|consen 267 APAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTS 346 (493)
T ss_pred hhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhh
Confidence 333355667777777888888999999999999999998886665555655556666666555555554444444
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh-hhHHHHHHHHhhhhcCCCC
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA-SFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~g~l~~~~~~~~~ 200 (329)
......+.++++|....+...++..-+..+++|++.|.+++++...+..+.+ +-+|.+.|.+.|...+|.+
T Consensus 347 ~s~~~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~~ 418 (493)
T KOG1330|consen 347 SSMIFGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYKP 418 (493)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCCc
Confidence 4455667777888887777776778888999999999999999999888776 5556699999999877775
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-14 Score=127.00 Aligned_cols=213 Identities=13% Similarity=0.210 Sum_probs=133.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CCCCccc--------cCCcchhHH------HHH-H---------HHH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCS-DGKSRAK--------DQKPHKAFC------FVI-F---------AYV 57 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~-~~~~~~~--------~~~~~~~~~------f~~-~---------~~~ 57 (329)
..|||+++++.++++++..++.++..||++.+ ..+.+.+ ...++|.++ +.. + +++
T Consensus 169 ~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (437)
T TIGR00792 169 KFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYY 248 (437)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhhee
Confidence 46899999999998888887777777774321 1111111 112344444 000 0 333
Q ss_pred HH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 041066 58 VR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGL 136 (329)
Q Consensus 58 ~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
.+ .++ +....+.+.....++.+++.++.++++||+|+|+ .+. .+. +...++.+.+...+ ...+...+
T Consensus 249 ~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~-----~~~--~~~-~~~~~~~~~~~~~~---~~~~~~~~ 316 (437)
T TIGR00792 249 FTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKI-----LFA--GGI-LLMVLGYLIFFFAG---SNLPLILV 316 (437)
T ss_pred EeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH--HHH-HHHHHHHHHHHHcc---hhHHHHHH
Confidence 33 334 4566777777778999999999999999999887 332 222 22222222222222 12233445
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhcC-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCcc
Q 041066 137 VLVIMGLCISWNAPTTNNPIFAEIVP-------ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSL 209 (329)
Q Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~ 209 (329)
..++.|++.+...+ ..+++++|..+ ++.+|.++|+.+++.++|.++++.+.|.+.+. .+|...
T Consensus 317 ~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~-~G~~~~-------- 386 (437)
T TIGR00792 317 LIILAGFGQNFVTG-LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI-IGYVAN-------- 386 (437)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCcC--------
Confidence 55666777666566 67888888754 56689999999999999999999999999988 456432
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041066 210 EVETDRENAASLAKALYTAIGIPMTICCF 238 (329)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (329)
..|.++...+++..+....+++.+++.+
T Consensus 387 -~~~~~~~~~~~~~~~~~~p~i~~~~~~~ 414 (437)
T TIGR00792 387 -AAQSPITLNGIKILMFAVPALFLLLAAI 414 (437)
T ss_pred -CcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455566666655555444444443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=131.13 Aligned_cols=178 Identities=18% Similarity=0.248 Sum_probs=113.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC----------C--CCc---ccc-----------CCcchhHH------H
Q 041066 5 GWRITFHLVGLISVIVGILVYLFAKD-TRCSD----------G--KSR---AKD-----------QKPHKAFC------F 51 (329)
Q Consensus 5 gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~----------~--~~~---~~~-----------~~~~~~~~------f 51 (329)
+||..|.+.++++++++++.+++.++ |++.. . ..+ +++ ..+++.+| +
T Consensus 189 ~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 268 (467)
T PRK09556 189 HVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANI 268 (467)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHH
Confidence 69999999898888887777777665 43210 0 000 000 11233444 1
Q ss_pred HH----------HHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH
Q 041066 52 VI----------FAYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL 120 (329)
Q Consensus 52 ~~----------~~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
+. .|.|+ +.+|++..++++..+...++.+++.+++|+++||+++|+ ...... .+......+.
T Consensus 269 ~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~-----~~~~~~--~~~~~~~~~~ 341 (467)
T PRK09556 269 FLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRR-----ALVACI--ALALIIFTLG 341 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-----hHHHHH--HHHHHHHHHH
Confidence 10 06555 679999999999999999999999999999999999887 322111 1111111111
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhh
Q 041066 121 LLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQ 193 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~ 193 (329)
... ...+ .....+.+++.|++...... .......|.+|++.+|+++|+.+...++ |++++|.+.|.+.|
T Consensus 342 ~~~--~~~~-~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 342 VYQ--HATS-EYMYLASLFALGFLVFGPQL-LIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHH--hcCc-HHHHHHHHHHHHHHHhhHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 111 1122 22334455555543322111 2235667999999999999999999997 66999999999998
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-14 Score=126.73 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=119.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-C---c--------------cc---------cCCcchhHH----
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGK-S---R--------------AK---------DQKPHKAFC---- 50 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~-~---~--------------~~---------~~~~~~~~~---- 50 (329)
+..|||+.|++.+++.++..++.++..++++++... . + .. +..++++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (399)
T TIGR00893 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLAL 222 (399)
T ss_pred HhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHH
Confidence 357899999998888777777776666663221100 0 0 00 011223333
Q ss_pred --HH------H----HHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHH
Q 041066 51 --FV------I----FAYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIA 117 (329)
Q Consensus 51 --f~------~----~~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 117 (329)
+. . +|.+. +.+|.+..+.+++.+...++.+++.++.|+++||+++|+.. +........+.....
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 299 (399)
T TIGR00893 223 GQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKS---LVFARKTAIIAGLVL 299 (399)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc---hhHHHHHHHHHHHHH
Confidence 00 0 05555 67899999999999999999999999999999999998621 111111111111111
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcC
Q 041066 118 AVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHG 197 (329)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~ 197 (329)
.+.......... .+.. +.....+.+.....+ ..++++.|.+|++.|++++|+.+.+.++|+.++|.+.|.+.+..++
T Consensus 300 ~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~ 376 (399)
T TIGR00893 300 SLLMFATNYVNI-PYAA-LALVALGFFGLGAGA-IGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGS 376 (399)
T ss_pred HHHHHHhccchh-HHHH-HHHHHHHHhchhhhh-HHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCc
Confidence 111111121112 2222 222333333332455 7889999999999999999999999999999999999999887432
Q ss_pred CCC
Q 041066 198 YKP 200 (329)
Q Consensus 198 ~~~ 200 (329)
+..
T Consensus 377 ~~~ 379 (399)
T TIGR00893 377 FAG 379 (399)
T ss_pred hhH
Confidence 443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-14 Score=125.72 Aligned_cols=179 Identities=13% Similarity=0.144 Sum_probs=113.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCcc-ccCCcc-hhHH------------HH---H-HHHHH-HHh
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRC-SDGKSRA-KDQKPH-KAFC------------FV---I-FAYVV-RTI 61 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~-~~~~~~~-~~~~~~-~~~~------------f~---~-~~~~~-~~~ 61 (329)
+++|||+.|++.+++.++.++.+++..||+++ ++..... +...++ +..+ +. . .|.|. +.+
T Consensus 168 ~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 247 (393)
T PRK15011 168 MGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTLEAPRRNRRDTLLLFVICTLMWGTNSLYIINMPLFIINEL 247 (393)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999988888877777777777322 1111111 111111 2222 11 0 15555 678
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 041066 62 GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIM 141 (329)
Q Consensus 62 g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (329)
|+++.+.+.+.+...++.+++.++.|+++||+++|+ ... ....... ........ . .. .+...+..++.
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~-----~~~--~~~~~~~-~~~~~~~~-~--~~-~~~~l~~~~l~ 315 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRF-----LMR--VAAVAGV-CFYAGMLM-A--HS-PAILLGLQLLN 315 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHH--HHHHHHH-HHHHHHHH-H--hh-HHHHHHHHHHH
Confidence 999999999888777888889999999999999987 332 1111111 11111111 1 11 22233333444
Q ss_pred HHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 142 GLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+++.+...+ ....+..|..|+ .+|+++++++...++|+.++|.+.|.+.+.
T Consensus 316 ~~~~g~~~~-~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 316 AIYIGILGG-IGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred HHHHHHHHH-HHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444333 445677888875 599999999999999999999999999887
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.4e-14 Score=129.60 Aligned_cols=178 Identities=19% Similarity=0.219 Sum_probs=103.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCC----Cc-cc--------cCCcchhHH-----HHH-----------
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGK----SR-AK--------DQKPHKAFC-----FVI----------- 53 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~----~~-~~--------~~~~~~~~~-----f~~----------- 53 (329)
.|||++|++.+++++++.++.+++.++ |+....+ .+ ++ +..+.+++| +..
T Consensus 195 ~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (476)
T PLN00028 195 TAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNI 274 (476)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhH
Confidence 589999999999888877777766655 3221000 00 00 001223333 100
Q ss_pred HHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 54 FAYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 54 ~~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
.|.|+ +.+|++..+++.+.++..++.+++++++|+++||+++|+..+.+.....+...+.. +..+. .....+ ..
T Consensus 275 ~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~-i~~~~---~~~~~~-~~ 349 (476)
T PLN00028 275 IAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGG-VFCIW---LGRANS-LG 349 (476)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHH-HHHHH---hcccch-HH
Confidence 05454 66899999999999999999999999999999999987533222222111111111 11111 111222 22
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
...+.+++.+++.+...+ ..++++.++. ++.+|+++|+.+...++|+.+++.+.
T Consensus 350 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~ 403 (476)
T PLN00028 350 AAIVVMILFSIFVQAACG-ATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLF 403 (476)
T ss_pred HHHHHHHHHHHHHHHhhh-hhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHH
Confidence 233334444554443333 3455556664 46799999998777666666666554
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5e-14 Score=126.31 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|+ +.+|++..+++...+...++++++.++.|+++||+.+++.. ....... ++.......+...+.. . ...
T Consensus 267 p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~---~~~~~~~--~~~~~~~~~~~~~~~~-~-~~~ 339 (434)
T PRK11663 267 NLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRG---PMNLIFA--AGILLSVGSLWLMPFA-S-YVM 339 (434)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcc---HHHHHHH--HHHHHHHHHHHHcccc-c-HHH
Confidence 5555 67899999999999999999999999999999998432210 1111111 1111111111122222 2 222
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.....+.+|++...... .......|..|++.+|++.|+.++..++|++++|.+.|.+.+. .+|..
T Consensus 340 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~-~g~~~ 404 (434)
T PRK11663 340 QAACFFTIGFFVFGPQM-LIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEI-WHWTG 404 (434)
T ss_pred HHHHHHHHHHHHhhHHH-HHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-cccHH
Confidence 22333344443321111 2345668888899999999999999999999999999999987 34444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.7e-14 Score=127.55 Aligned_cols=186 Identities=15% Similarity=0.241 Sum_probs=113.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-c--------cCCcchhHH--------HH--------HH-HH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-K--------DQKPHKAFC--------FV--------IF-AY 56 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-~--------~~~~~~~~~--------f~--------~~-~~ 56 (329)
.+|||.+|++.+++.++..+..+ +.|||.......+. + +.++.+..| +. .. |+
T Consensus 170 ~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~ 248 (491)
T PRK11010 170 YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTF 248 (491)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999998887666654444 46775322111100 0 011122222 00 00 45
Q ss_pred HHHHhCCChhHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH-hcCCCCchhHHH
Q 041066 57 VVRTIGFSHGLTVFLMT-LFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL-VLPDDPSTGFMH 134 (329)
Q Consensus 57 ~~~~~g~s~~~~~~~~~-~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 134 (329)
+.+.+|++..+.+++.. ...++.+++.+++|+++||+|+|+ ... +...+.. +..+.+. ......+ .+.+
T Consensus 249 l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~-----~l~--i~~~l~~-l~~l~~~~l~~~~~~-~~~l 319 (491)
T PRK11010 249 LIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR-----ALM--IFGILQG-VSNAGYWLLSITDKN-LYSM 319 (491)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHH--HHHHHHH-HHHHHHHHHHhcccc-HHHH
Confidence 55779999999999875 556899999999999999999887 322 1111111 1111111 1111122 2223
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
....++..++.+...+ ...++..+..+++.+++.+|+.+...++|..+++.+.|.+.+.. +|..
T Consensus 320 ~~~~~l~~~~~g~~~~-~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~ 383 (491)
T PRK11010 320 GAAVFFENLCGGMGTA-AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPT 383 (491)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH
Confidence 3333443333333334 46788889999999999999999999999999999999999973 4433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-14 Score=125.69 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=86.5
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|. +.+|++......+....++..+++.++.|+++||+|||+ ... .+..+........+....... ..+.
T Consensus 274 ~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~-----~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 345 (438)
T PRK09952 274 LNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRR-----VYI--TGALIGTLSAFPFFMALEAQS-IFWI 345 (438)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHH--HHHHHHHHHHHHHHHHHHcCC-hHHH
Confidence 5554 678888876666666667788889999999999999987 333 111111111111111111111 2223
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHH-HHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFES-ILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~g~l~~~~ 195 (329)
+....++.+++.+...+ ..++++.|.+|.+.|+++.++.+.... ++++++|.+.+++.+..
T Consensus 346 ~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~ 407 (438)
T PRK09952 346 VFFSIMLANIAHDMVVC-VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYF 407 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344445566555555 678899999999999999999766554 88999999999998864
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=121.86 Aligned_cols=184 Identities=18% Similarity=0.227 Sum_probs=118.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCcc---ccCCcchhHH------HHH------H----HHHH-HH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSRA---KDQKPHKAFC------FVI------F----AYVV-RT 60 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~~---~~~~~~~~~~------f~~------~----~~~~-~~ 60 (329)
+.+|||++|++.+++.++..++.++++|| |+.+..+... ++..+.++++ +.. + |.+. +.
T Consensus 150 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T TIGR00899 150 LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGALTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHE 229 (375)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccccCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 35799999999988877777777776776 3222111111 1112223332 100 0 5554 67
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVI 140 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (329)
+|.++.+.+.+.....+..+++.++.|++.||+++|+ ... +...+.. ........ .+ ..+......++
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~--~~~~~~~-~~~~~~~~---~~-~~~~~~~~~~~ 297 (375)
T TIGR00899 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRR-----LML--LAALAGV-AFYTGLAA---DN-SLWALLMLQLL 297 (375)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchh-----HHH--HHHHHHH-HHHHHHHH---HH-HHHHHHHHHHH
Confidence 8999999999888777778888999999999999987 332 1111111 11111111 11 22334445555
Q ss_pred HHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 141 MGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.|++.+...+ ....+..|..|++ +++++++.+...++|..++|.+.|.+.+. .+|..
T Consensus 298 ~g~~~g~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-~g~~~ 354 (375)
T TIGR00899 298 NAIFIGILAG-IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER-WSYHA 354 (375)
T ss_pred HHHHHHHHHH-HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchh
Confidence 6666665555 5677888887754 77999999999999999999999999887 34444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-13 Score=125.81 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=96.4
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|+|.+ .+|.++.+.+++..+..++.+++.++.|++.||+|+|+ ++. ...+...+....+....... +.+.
T Consensus 285 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~-----~~~---~~~~~~~~~~~~~~~~~~~~-~~~~ 355 (471)
T PRK10504 285 PVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRR-----VLV---ATTLGLALVSLLFMLVALLG-WYYL 355 (471)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHH---HHHHHHHHHHHHHHhccccc-cHHH
Confidence 77775 58999999999999999999999999999999999987 332 22222222222222222222 2233
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..+..++.|++.+...+ ....++.+.+|++.+|.++|+.++.+++|+++|+.+.|.+.+..
T Consensus 356 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 356 LPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445566676666566 67788888899999999999999999999999999999999873
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-13 Score=120.48 Aligned_cols=132 Identities=17% Similarity=0.141 Sum_probs=91.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+++.+.++..++.++++++.|++.||+++|+ ... ........+...+...+.. . . ..
T Consensus 229 p~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~-----~~~---~~~~l~~~~~~~~~~~~~~-~-~-~~ 297 (393)
T PRK09705 229 PAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRK-----LLM---LALVLQLVGFCGFIWLPLQ-L-P-VL 297 (393)
T ss_pred HHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchH-----HHH---HHHHHHHHHHHHHHHccch-H-H-HH
Confidence 6666668999999999999999999999999999999999887 332 1112222222222222221 1 1 11
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcC-CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVP-ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
..++.|++.+...+ .......+..+ ++++|+++|+.+...++++.++|.+.|++.|..++|..
T Consensus 298 --~~~l~g~g~g~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~ 361 (393)
T PRK09705 298 --WAMVCGLGLGGAFP-LCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLM 361 (393)
T ss_pred --HHHHHHHhccchHH-HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchH
Confidence 22345666665555 45555566664 57899999999999999999999999999998654444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=126.20 Aligned_cols=130 Identities=14% Similarity=0.111 Sum_probs=97.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.++ +.+|+++.++|+...+..++..++.++.|++.||+|+|+ .+. .+..+ ..++...+........ .+.
T Consensus 283 ~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~--~g~~~-~~~~~~~l~~~~~~~~-~~~ 353 (495)
T PRK14995 283 AQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL-----VAT--GGMAL-SALSFYGLAMTDFSTQ-QWQ 353 (495)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHH--HHHHH-HHHHHHHHHHhcCCCc-hHH
Confidence 5444 568999999999999999999999999999999999876 322 12221 2222222222222222 233
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.....++.|++.+...+ .....+.+..|+++++.+.++.++.+++|+.+|+.+.|.+.+.
T Consensus 354 ~~~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 354 AWGLMALLGFSAASALL-ASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHhHHHHHH-HHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888887776 6777888888999999999999999999999999999998875
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-13 Score=124.82 Aligned_cols=129 Identities=13% Similarity=0.146 Sum_probs=85.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+..|++....++...+.++..+++.+++++++||+|||+ ++. .+.. ...++.+.+.............
T Consensus 295 p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~-----~~i--~~~~-~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 295 PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----LQI--IGAL-GMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred HHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH-----HHH--HhHH-HHHHHHHHHHHHHhcCcccHHH
Confidence 5555778888877787777888899999999999999999987 332 1222 2222222221111111111122
Q ss_pred HHHHHHHHHHhhcc-CCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 135 GLVLVIMGLCISWN-APTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 135 ~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
..+.++.+.+.+.. .+ ..+.+++|.+|+++|+++.|+.+..+++++.+++.+.+.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~ 424 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGP-VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424 (479)
T ss_pred HHHHHHHHHHHhccccc-hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 22333333333322 34 67899999999999999999999999999999988876555
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-13 Score=121.70 Aligned_cols=215 Identities=13% Similarity=0.118 Sum_probs=128.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CC--CCCcccc--------CCcchhHH------HHHH----------HH
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRC-SD--GKSRAKD--------QKPHKAFC------FVIF----------AY 56 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~-~~--~~~~~~~--------~~~~~~~~------f~~~----------~~ 56 (329)
.||+...++.+++.++..+.+++..||+.. .. .+.+++. ..++|.++ +... +|
T Consensus 177 ~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y 256 (473)
T PRK10429 177 FGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIY 256 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 368888888888777767777776777311 11 0100100 12344444 0000 44
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh-cCCCCchhHHHH
Q 041066 57 VVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV-LPDDPSTGFMHG 135 (329)
Q Consensus 57 ~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 135 (329)
+.+....+....+.+.+...++.+++.++.++++||+|+|+ .+. .+..+..+.....+.. ... +...+.+.
T Consensus 257 ~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~-----~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 328 (473)
T PRK10429 257 YFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRI-----LWA--GASIFPVLSCGVLLLMGLAA-PHNALLIV 328 (473)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHH--HHHHHHHHHHHHHHHHhccC-chhHHHHH
Confidence 44433445666677777777889999999999999999998 332 1222211111111111 111 22233444
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcC-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCc
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVP-------ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNS 208 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 208 (329)
+..++.|++.+...+ ..+++++|..+ .+..|..+|..+++..++.++++.+.|.+++. .+|...
T Consensus 329 i~~~l~g~~~~~~~~-~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~-~Gy~~~------- 399 (473)
T PRK10429 329 IAGILLNIGTALFWV-LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGL-IGYVPN------- 399 (473)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCC-------
Confidence 555566666666555 67888999854 55677899999999999999999999999987 566542
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041066 209 LEVETDRENAASLAKALYTAIGIPMTICC 237 (329)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (329)
..|.++...+++..+....+++.+++.
T Consensus 400 --~~q~~~~~~~i~~~~~~~p~~~~~~~~ 426 (473)
T PRK10429 400 --VEQSAQTLLGMQFIMIGLPTLFFMITL 426 (473)
T ss_pred --CcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555666666655555444434333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-13 Score=119.34 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=112.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCCCCcc--ccCCcchhHH------HHH----------HHHHH-HHh
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTR--CSDGKSRA--KDQKPHKAFC------FVI----------FAYVV-RTI 61 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~--~~~~~~~~--~~~~~~~~~~------f~~----------~~~~~-~~~ 61 (329)
.+|||++|++.+++.++..++.++ .+.|+ +++.+... .+....+.++ ++. .|.|. +.+
T Consensus 158 ~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 236 (394)
T PRK03699 158 SIEWYWVYACIGLVYVAIFILTLF-SEFPALGKHAPKADKPVAKEKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKF 236 (394)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHh-cCCccccccCccccCccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 469999999988776665554433 22222 11111101 1111123333 110 16666 678
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 041066 62 GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIM 141 (329)
Q Consensus 62 g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (329)
|+++.+.+.+.+...++..++.++.|+++||+++|+ .... ...+.. +....+... . + .....+..++.
T Consensus 237 g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~l~~--~~~~~~-~~~~~~~~~-~--~-~~~~~~~~~~~ 304 (394)
T PRK03699 237 GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQR-----ILTV--LAGLAL-VLMYLFVNT-D--D-PSHLLYAILGL 304 (394)
T ss_pred CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhh-----HHHH--HHHHHH-HHHHHHHHc-C--C-chHHHHHHHHH
Confidence 999999999999999999999999999999999987 3321 111111 222222211 1 1 12233445666
Q ss_pred HHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 142 GLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
|++.+...+ ...+...+..|. .++...+......++|+.++|.+.|.+.+.. ++..
T Consensus 305 G~~~~~~~~-~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~ 360 (394)
T PRK03699 305 GFFSSAIYT-TIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQA 360 (394)
T ss_pred HHHHHHHHH-HHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-Cchh
Confidence 776665555 556666776654 4678889999999999999999999999873 4443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-12 Score=114.22 Aligned_cols=218 Identities=16% Similarity=0.217 Sum_probs=154.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc--ccc--------CCcchhHH------HHHH----------HH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSR--AKD--------QKPHKAFC------FVIF----------AY 56 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~--~~~--------~~~~~~~~------f~~~----------~~ 56 (329)
..||+..-++.++++.+..+.+++.++|+..+..+.+ .+. .+++|++. ++.+ .|
T Consensus 182 ~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~y 261 (467)
T COG2211 182 ALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVY 261 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhhe
Confidence 5799999999999999999999999999433222111 111 12344443 1111 45
Q ss_pred HH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 57 VV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 57 ~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
|. ..+|.+.....+.......+.+++.++..++++|+|+|+ ++. ...+...++.+.++..+ ....+...
T Consensus 262 y~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~-----~~~---~~~~~~~i~~~~~~f~~--~~~~~l~~ 331 (467)
T COG2211 262 YVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKK-----LFL---IGLLLLAVGYLLLYFTP--AGSVVLIV 331 (467)
T ss_pred eEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHH-----HHH---HHHHHHHHHHHHHHhhc--CcchHHHH
Confidence 55 457778888888888888888888999999999999998 443 22333334444444444 23345556
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhc-------CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCc
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIV-------PERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNS 208 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 208 (329)
+..++.+++.+...+ ..|++++|.. ..+..|..+|.+++++.+|.+++..+.|++++. .||.+.
T Consensus 332 ~~~~i~~~g~~~~~~-l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~-~Gyv~~------- 402 (467)
T COG2211 332 VALIIAGVGTGIANP-LPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA-IGYVPN------- 402 (467)
T ss_pred HHHHHHHHHhhcccc-ccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCC-------
Confidence 666777788887777 8899999985 357789999999999999999999999999998 678775
Q ss_pred chh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041066 209 LEV-ETDRENAASLAKALYTAIGIPMTICCFIYS 241 (329)
Q Consensus 209 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (329)
. +|......+++..+.+..+++.+++.+...
T Consensus 403 --~~~Q~~~al~gI~~~~~~~Pa~l~l~~~i~~~ 434 (467)
T COG2211 403 --VSAQSASALFGIRFLFIILPALLLLLAAIIIF 434 (467)
T ss_pred --cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 577777888887777766666555554433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-13 Score=121.74 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=114.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCccccCCcchhHH---------HHHH-------HHHHHHhCCCh
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDG-KSRAKDQKPHKAFC---------FVIF-------AYVVRTIGFSH 65 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~-~~~~~~~~~~~~~~---------f~~~-------~~~~~~~g~s~ 65 (329)
..+||.++++..++.++..++.+++.++++..+. ..+..+..++++.| |..+ |+|.+. .++.
T Consensus 207 ~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~ 285 (462)
T PRK15034 207 VMSLANAAWIWVPLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPD 285 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCh
Confidence 3458999999888877777777777666332211 11122345666667 1111 666643 3343
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHHH
Q 041066 66 GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD-PSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 66 ~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~ 144 (329)
...........+...++++++|+++||+|+++ +.. +......+.....+...+.. ....+...+.++.+.++
T Consensus 286 ~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~-----vl~--~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~ 358 (462)
T PRK15034 286 VNILRLAFFGPFIGAIARSVGGAISDKFGGVR-----VTL--INFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLT 358 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhcCchH-----HHH--HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 33333334456788889999999999999988 333 22222222222222223322 12344444444444455
Q ss_pred hhccCCCCchhHHhhhcCC---------------------cchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 145 ISWNAPTTNNPIFAEIVPE---------------------RSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~---------------------~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.|.... ..+-++..++|+ ++.|.+.|+....+.+|+.+.|.+.|...+..+++..
T Consensus 359 ~G~gng-svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~ 434 (462)
T PRK15034 359 AGLGSG-STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVG 434 (462)
T ss_pred hcccch-HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHH
Confidence 554444 556677777764 2688999999999999999999999999888655554
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=125.73 Aligned_cols=129 Identities=14% Similarity=0.186 Sum_probs=90.2
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|. +.+|++..+.+++.++..++.+++.++.|+++||+++|+ .+. ....+.. +..+...... .. ..+.
T Consensus 299 p~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~-----~~~--~~~~~~~-~~~~~~~~~~-~~-~~~~ 368 (496)
T PRK03893 299 PTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK-----AYV--CSLLISQ-LLIIPVFAIG-GA-NVWV 368 (496)
T ss_pred HHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH--HHHHHHH-HHHHHHhhcc-cc-HHHH
Confidence 6666 588999999999999999999999999999999999887 322 1111111 1111111111 12 2222
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.....++.++......+ ...++++|.+|++.||+++|+.+...++|+.++|.+.|.+.+.
T Consensus 369 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~ 428 (496)
T PRK03893 369 LGLLLFFQQMLGQGISG-LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQR 428 (496)
T ss_pred HHHHHHHHHHHhcccch-hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhcc
Confidence 33333333333222334 5677889999999999999999999999999999999999887
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=123.13 Aligned_cols=189 Identities=17% Similarity=0.295 Sum_probs=112.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCC-C--C----CC-------c-ccc-----------CCcchhHH------
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCS-D--G----KS-------R-AKD-----------QKPHKAFC------ 50 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~-~--~----~~-------~-~~~-----------~~~~~~~~------ 50 (329)
+.|||+.|++.+++.++..++.++++||+++. . + +. + .+. ..+++.+|
T Consensus 181 ~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (438)
T TIGR00712 181 FNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIAN 260 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHH
Confidence 36899999999988888777777777763211 0 0 00 0 000 12223333
Q ss_pred HH-------H---HHHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 041066 51 FV-------I---FAYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAV 119 (329)
Q Consensus 51 f~-------~---~~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
++ . +|.|+ +..|+++.++++...+..++.+++.+++|+++||+++++. .......... ...+..
T Consensus 261 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~----~~~~~~~~~~-~~~~~~ 335 (438)
T TIGR00712 261 VFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNR----GATGVFFMTL-VTIAVI 335 (438)
T ss_pred HHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc----cHHHHHHHHH-HHHHHH
Confidence 00 0 06666 4579999999999999999999999999999999975442 1111111111 111112
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh-hhHHHHHHHHhhhhcCC
Q 041066 120 LLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA-SFAPPVVGLLAQHVHGY 198 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~g~l~~~~~~~ 198 (329)
.+...+. .. .+......++.|++...... .......|.+|++.||+++|+.+...++++ +++|.+.|.+.+.. +|
T Consensus 336 ~~~~~~~-~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~-g~ 411 (438)
T TIGR00712 336 VYWMNPA-GN-PLVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GW 411 (438)
T ss_pred HHHhcCC-Cc-hHHHHHHHHHHHHHHccHHH-HHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc-cc
Confidence 2221111 12 12223333444443322111 123456788999999999999999999875 68999999999973 44
Q ss_pred CC
Q 041066 199 KP 200 (329)
Q Consensus 199 ~~ 200 (329)
..
T Consensus 412 ~~ 413 (438)
T TIGR00712 412 DG 413 (438)
T ss_pred hH
Confidence 44
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-13 Score=120.44 Aligned_cols=186 Identities=16% Similarity=0.164 Sum_probs=109.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc--ccCCcchhHH-------H------H---HH-HHHHHHhC
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA--KDQKPHKAFC-------F------V---IF-AYVVRTIG 62 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~--~~~~~~~~~~-------f------~---~~-~~~~~~~g 62 (329)
+.+|||++|++.+++.++..+..++.+||++++.+...+ .+..+++..| + . .+ |++.+.+|
T Consensus 152 ~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 231 (382)
T PRK10091 152 QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKGGLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISG 231 (382)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 357999999999988777776666667763222111110 0122233333 0 0 01 44446789
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
+++.+.+++.+...++.+++.++.|++.||+++|+ +.. ... ....++.+.+..... .. +...+..++.+
T Consensus 232 ~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~-----~~~--~~~-~~~~i~~~~~~~~~~--~~-~~~~~~~~~~~ 300 (382)
T PRK10091 232 FSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLR-----IAA--VTD-FIIVLALLMLFFFGG--MK-TASLIFAFICC 300 (382)
T ss_pred CCHHHHHHHHHHHHHHHHHHhHHHheeccccCchh-----HHH--HHH-HHHHHHHHHHHHHHh--hH-HHHHHHHHHHH
Confidence 99999999999999999999999999999999887 332 111 111222222211111 11 22333333444
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
++.....++.......+..+++.++.+ ..+...++|.++||.+.|.+.|...+|..
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~ 356 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNY 356 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcch
Confidence 443332331222334444444444444 44677889999999999999997556655
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.6e-13 Score=121.67 Aligned_cols=181 Identities=17% Similarity=0.135 Sum_probs=101.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCccc----cCCcchhHH------HHH-------H----HHHH-H
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDT-RCSDGKSRAK----DQKPHKAFC------FVI-------F----AYVV-R 59 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p-~~~~~~~~~~----~~~~~~~~~------f~~-------~----~~~~-~ 59 (329)
.+|||++|++.++++++. +.....+||+ +.+....++. +.+++++.+ +.. + |.++ +
T Consensus 194 ~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~ 272 (432)
T PRK10406 194 EWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVN 272 (432)
T ss_pred ccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhhhcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999977765544 3334445552 2111110000 112233333 100 0 5555 6
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
.+|++..+.+...+...+...++.++.|+++||++||+ ... ....+........+........... ....+.
T Consensus 273 ~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 344 (432)
T PRK10406 273 TAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRT-----SML--CFGSLAALFTVPILSALQNVSSPYA-AFGLVM 344 (432)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHH--HHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHH
Confidence 68999999998888888888888999999999999987 332 1111111111111111111112111 111222
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQH 194 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~ 194 (329)
+..++.+...+ ..+.+.+|.+|++.|++++|+.+...++ ++...|.+.+.+ +.
T Consensus 345 ~~~~~~~~~~~-~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~ 398 (432)
T PRK10406 345 CALLIVSFYTS-ISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KS 398 (432)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HH
Confidence 22222222233 4677889999999999999999988775 345577777744 54
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.6e-13 Score=118.59 Aligned_cols=183 Identities=11% Similarity=-0.002 Sum_probs=115.7
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc--------ccCCcchhHH-----H--H-----H----HHHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA--------KDQKPHKAFC-----F--V-----I----FAYV 57 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~--------~~~~~~~~~~-----f--~-----~----~~~~ 57 (329)
++.|||+.|++.+++.++..+..++..||++....+... +...+++.++ + . . .|.+
T Consensus 162 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 241 (406)
T PRK15402 162 HVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVI 241 (406)
T ss_pred HccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 357999999998888777766666666663221111100 0112334444 0 0 0 0555
Q ss_pred H-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHH
Q 041066 58 V-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLP-DDPSTGFMHG 135 (329)
Q Consensus 58 ~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 135 (329)
. +.+|+++.+.++......++.+++.++.|+++||+++|+ ... ++ .+...++...+...+ ......+.+.
T Consensus 242 ~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~-----~~~--~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 313 (406)
T PRK15402 242 LISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRS-----LIR--MG-LWPMVAGLLLAALATVISSHAYLWLT 313 (406)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHH--HH-HHHHHHHHHHHHHHHHcccccHHHHH
Confidence 4 678999999999888888889999999999999999887 322 11 111112222111111 1111233345
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+..++.|++.+...+ ......... +++++|++.++.++.+.++..+|+.+.+.+.+.
T Consensus 314 ~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~ 370 (406)
T PRK15402 314 AGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG 370 (406)
T ss_pred HHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 566667777766555 444444443 457899999999999999999999999988765
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-13 Score=115.05 Aligned_cols=185 Identities=18% Similarity=0.230 Sum_probs=125.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCccc-----cCCcchhHH---------HHHH-------HHHH-HHhC
Q 041066 6 WRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSRAK-----DQKPHKAFC---------FVIF-------AYVV-RTIG 62 (329)
Q Consensus 6 Wr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~~~-----~~~~~~~~~---------f~~~-------~~~~-~~~g 62 (329)
||....+..+..++..+..++..+| |+.+....... ...++++.| |..+ |.|. +++|
T Consensus 171 w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg 250 (417)
T COG2223 171 WRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG 250 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999888888888888888888 54322222111 134467777 1111 6555 7999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC--CchhHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD--PSTGFMHGLVLVI 140 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 140 (329)
.++.++|.+.....+.+.+.++++|+++||+|.++ ... .....+.....+.....+.. ....+.....++.
T Consensus 251 ~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~r-----v~~--~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 323 (417)
T COG2223 251 LSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRR-----VTL--AVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLA 323 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHhccchhhhhccchh-----HHH--HHHHHHHHHHHHHHccccccccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988 332 22222222222222211111 1223344444555
Q ss_pred HHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 141 MGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
.+++.+.... ..+.++..++|+ +.|.+.|+....+.+|+..-|...|...+.++.+.
T Consensus 324 l~~~~G~GnG-svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~ 380 (417)
T COG2223 324 LFVFAGLGNG-SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYT 380 (417)
T ss_pred HHHHhccCcc-hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHH
Confidence 5666555444 567778888765 58999999999999999999999999998864333
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=122.47 Aligned_cols=187 Identities=15% Similarity=0.199 Sum_probs=114.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC---CCC-----------------cc----ccCC---------cchh
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKD-TRCSD---GKS-----------------RA----KDQK---------PHKA 48 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~---~~~-----------------~~----~~~~---------~~~~ 48 (329)
.+|||++|++.++++++..++.++++|| |+..+ .++ .. +... ..+.
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIFTPA 243 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHhcChH
Confidence 4799999999988888877777777887 42211 000 00 0000 0122
Q ss_pred HH------HHH----------HHHHHHHh--CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHH
Q 041066 49 FC------FVI----------FAYVVRTI--GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISS 110 (329)
Q Consensus 49 ~~------f~~----------~~~~~~~~--g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 110 (329)
+| ++. +|.+++++ |.+..+++.+..+..++.+++.++.|+++||+++|+ .... ...
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~-----~~~~-~~~ 317 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERK-----HHTA-LPY 317 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccH-----HHHH-HHH
Confidence 22 110 07777654 678888999999999999999999999999999776 2211 111
Q ss_pred HHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHH
Q 041066 111 GSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGL 190 (329)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~ 190 (329)
.+ ..+...... .. ... .. ......+.+++.....+ ..+....|.+|+++|++++|+.+...++|++++|.+.|.
T Consensus 318 ~~-~~~~~~~~~-~~-~~~-~~-~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 318 LF-AAAGWLLAS-AT-DHN-LI-QLLGIIMASMGSFSAMA-IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HH-HHHHHHHHH-hc-CCH-HH-HHHHHHHHHHHhhhhhh-HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 11 111111111 11 111 11 11122222233222222 334555677899999999999999999999999999999
Q ss_pred HhhhhcCCCCC
Q 041066 191 LAQHVHGYKPV 201 (329)
Q Consensus 191 l~~~~~~~~~~ 201 (329)
+.+..++|...
T Consensus 392 i~~~~g~~~~~ 402 (412)
T TIGR02332 392 LKDATGSFNSG 402 (412)
T ss_pred ccccCCCCchh
Confidence 99986566653
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=124.56 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=95.7
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|. +.+|+++.+++++..+..++.+++.++.|++.||+++|+ ... ...+...++...+..........+.
T Consensus 279 p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~---~g~~~~~~~~~~~~~~~~~~~~~~~ 350 (485)
T TIGR00711 279 PLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK-----LVT---IGLILYAVGFYWRAFTFTPDTPFLA 350 (485)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH-----HHH---HHHHHHHHHHHHHhccCCCCCCHHH
Confidence 6666 568999999999999999999999999999999999987 322 2222222222222211112222334
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.....++.|++.+...+ .......+..|++++|+++|+.++.+++|+.+|+.+.+.+.++
T Consensus 351 ~~~~~~l~g~g~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 351 IALPQFIRGFGMGCFFM-PLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777776655 4566667778999999999999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.3e-14 Score=119.95 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=106.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.++.|+|.++.|++.+.+.+...++..+.|.++||.+.|. .+. ++.+++. +..+++.+ .+ +..++
T Consensus 53 p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~-----fm~--~gLilsa-i~nil~Gf---s~-s~~~~ 120 (448)
T COG2271 53 PALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY-----FMA--FGLILSA-IVNILFGF---SP-SLFLF 120 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce-----eeh--HHHHHHH-HHHHHHhh---hh-HHHHH
Confidence 8888889999999999999999999999999999999999997 222 1211111 22222222 22 56778
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH--HHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV--GLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~--g~l~~~~~~~~~ 200 (329)
.++.++.|++.++..| ++...+...+++++||+..|+.|+..|+|+++.|++. +++..+ ++|+.
T Consensus 121 ~~l~~lng~fQg~Gwp-p~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~-~~w~~ 186 (448)
T COG2271 121 AVLWVLNGWFQGMGWP-PCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH-GGWRA 186 (448)
T ss_pred HHHHHHHHHHhcCCCc-HHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc-cchhH
Confidence 8888999999999998 8899999999999999999999999999999999998 777665 34444
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-13 Score=119.26 Aligned_cols=132 Identities=16% Similarity=0.150 Sum_probs=87.9
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|+ +.+|++..+.+++..+..++.+++.+++|+++||+|||+ .... ...+........+......+. ...
T Consensus 262 p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~ 333 (434)
T PRK15075 262 PTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP-----VLIA--FTVLAILTAYPALSWLVAAPS-FAR 333 (434)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHH--HHHHHHHHHHHHHHHHHcCCc-hHH
Confidence 6666 458999999999888889999999999999999999987 3321 111111111111111111222 222
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~~ 195 (329)
.....++.+++.+...+ ..+.+..|.+|++.|+++.++.+.+... ++.++|.+.|++.+..
T Consensus 334 ~~~~~~~~~~~~g~~~~-~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~ 395 (434)
T PRK15075 334 MLAVELWLSFLYGSYNG-AMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT 395 (434)
T ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence 22333444555555444 5677889999999999999997655554 5888999999999984
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-13 Score=117.70 Aligned_cols=188 Identities=13% Similarity=0.036 Sum_probs=112.6
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-CCcc----ccCCcchhHH------HHH----------HHHHHHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDG-KSRA----KDQKPHKAFC------FVI----------FAYVVRT 60 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~-~~~~----~~~~~~~~~~------f~~----------~~~~~~~ 60 (329)
+++|||.+|++.+++.++..+..++..|+++.+.+ +.+. .+..++|.++ +.. .+.|.++
T Consensus 158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~ 237 (390)
T TIGR02718 158 GKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVD 237 (390)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 35799999999998877766666555444221111 1110 0112333333 111 1556667
Q ss_pred hCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH-hc-CCCCchhHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFT-IAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL-VL-PDDPSTGFMHGLV 137 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~-i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~ 137 (329)
.|+++.+.|++..... +..+++.+++|++.||+|+|+ .... +..+........+. .. ..... .......
T Consensus 238 ~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 309 (390)
T TIGR02718 238 AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWR-----TFIL--GVGLAGSLALLWFAQAAFWLAPG-IAVAWSC 309 (390)
T ss_pred cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH-----HHHH--HHHHHHHHHHHHHHHHHcccCCc-HHHHHHH
Confidence 8999999999888776 466778899999999999987 3321 11111111111111 11 11111 1122222
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCC-cchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPE-RSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
..+.+++.+...+ ...+.+.+..++ +.+|+.+++.+...++|..++|.+.|.+.+.. ++.
T Consensus 310 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~ 370 (390)
T TIGR02718 310 SAFGSLITGITSV-AIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYA 370 (390)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccH
Confidence 2333444444444 456666666665 78999999999999999999999999999873 443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-12 Score=116.86 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=93.4
Q ss_pred HHHHHHhCCCh--------hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC
Q 041066 55 AYVVRTIGFSH--------GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD 126 (329)
Q Consensus 55 ~~~~~~~g~s~--------~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (329)
|.+.++.|.++ ...+...+...+..+++.++.|+++||+|+|+ ++. ...+...+....+.....
T Consensus 232 ~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~-----~l~---~~~~~~~v~~~l~~~~~~ 303 (418)
T TIGR00889 232 NGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKK-----VML---LSLVAWALRFGFFAYGDP 303 (418)
T ss_pred HHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH---HHHHHHHHHHHHHHHcCc
Confidence 44555666554 56688888889999999999999999999998 332 222222222222222111
Q ss_pred CCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHH-HHHHHHhhhHHHHHHHHhhhhc
Q 041066 127 DPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDR-SFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
.....+.+.+..++.|++.+...+ ....++.|.+|++.|+++.|+.+ ....+|+++||.+.|.+.+..+
T Consensus 304 ~~~~~~~l~l~~~l~g~~~~~~~~-~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 304 EYFGYALLFLSMIVYGCAFDFFNI-SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 111233455566777777766666 66788899999999999999997 5678999999999999999854
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.54 E-value=1e-12 Score=117.75 Aligned_cols=193 Identities=13% Similarity=0.235 Sum_probs=132.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCCccc--------------cCCcchhHH-----HHHH---------
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRC-SDGKSRAK--------------DQKPHKAFC-----FVIF--------- 54 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~-~~~~~~~~--------------~~~~~~~~~-----f~~~--------- 54 (329)
.+-|..+.+.++.-++..+..++.+|+++. +..+.... +..+.|+++ +.++
T Consensus 223 ~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~ 302 (477)
T PF11700_consen 223 WAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIIS 302 (477)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999989999999999988432 11111110 011223332 1111
Q ss_pred --HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHH-HHHHHHHHHHHhcCCCCch
Q 041066 55 --AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSG-SVIPIAAVLLLVLPDDPST 130 (329)
Q Consensus 55 --~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 130 (329)
..|. +.+|++..+...+.....+..++|+++.|++.||+|.|... .+...+... +....+++.+.........
T Consensus 303 ~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~---~l~~~l~~~~~i~~~g~~G~~~~~~g~~~ 379 (477)
T PF11700_consen 303 FAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKR---TLLISLILWIIIPLYGLFGFWPSFFGLKS 379 (477)
T ss_pred HHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH---HHHHHHHHHHHHHHHHHHHhhhcccCccc
Confidence 3444 68999999999999999999999999999999999998210 322111111 1111111111111111223
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+.+..++.|++.|...+ ...++.+++.|+++.+.-+|++...+...+.+||.+.|.+.+.+++.+.
T Consensus 380 ~~~f~~~a~~~G~~~G~~qs-~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~ 448 (477)
T PF11700_consen 380 PWEFWVLAVLIGLFMGGIQS-ASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY 448 (477)
T ss_pred HHHHHHHHHHHHHHhhhHHH-HHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh
Confidence 44566777788888888777 8899999999999999999999999999999999999999998654444
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-13 Score=119.98 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=93.2
Q ss_pred HHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVRT-IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~-~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|.++ +|.++...+++.+...++.+++.++.+++.||.++++ .+. ...+...+..+.+.. .+ +.+.
T Consensus 247 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~-----~l~---~~~~~~~~~~~~~~~---~~-~~~~ 314 (417)
T PRK10489 247 PALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGL-----LML---LSTLGSFLAVGLFGL---MP-MWIL 314 (417)
T ss_pred HHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcch-----HHH---HHHHHHHHHHHHHHc---cc-hHHH
Confidence 666654 8999999999999999999999999999999865554 222 111122222222221 12 2334
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..++.++.|++.+...+ ...+++.+..|++.||+++|+++...++|..+||.+.|.+.+..
T Consensus 315 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~ 375 (417)
T PRK10489 315 AVLCLALFGYLSAISSL-LQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM 375 (417)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh
Confidence 55566667777665555 56788899999999999999999999999999999999999874
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.6e-13 Score=122.92 Aligned_cols=188 Identities=14% Similarity=0.112 Sum_probs=112.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCc-------------c-c--c------CCcchhHH------HH--
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSR-------------A-K--D------QKPHKAFC------FV-- 52 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~-------------~-~--~------~~~~~~~~------f~-- 52 (329)
.|||++|++.++++++..++++++.+| |+.++...+ . + . ..+++.+| |+
T Consensus 195 ~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (465)
T TIGR00894 195 GGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHF 274 (465)
T ss_pred CCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHH
Confidence 499999999999888887777777765 432211100 0 0 0 01123333 11
Q ss_pred ----HH----HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 041066 53 ----IF----AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV 123 (329)
Q Consensus 53 ----~~----~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
.+ |.|+ +.+|++..+.+++.++..++.+++.+++|+++||+++|+.........+.............+..
T Consensus 275 ~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (465)
T TIGR00894 275 WLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL 354 (465)
T ss_pred HHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 6665 67899999999999999999999999999999998876532211111111111111111111111
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 124 LPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...... .....+++.+.+.+.+...+ ..+....+..|. .+|.+.|+.++.+++++.++|.+.|.+.+.
T Consensus 355 ~~~~~~-~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~ 422 (465)
T TIGR00894 355 PYLSAA-FYLTIIILTLANAVSSGPLA-GVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQ 422 (465)
T ss_pred HHcCCc-hHHHHHHHHHHHHHhhhhhh-hhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCC
Confidence 111111 22223333333444443333 445556677654 799999999999999999999999888764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-13 Score=119.99 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=90.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH---hcCCCC---
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL---VLPDDP--- 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--- 128 (329)
|++.+..|++..+.++...+..++.+++.+++|+++||+++|+ ... .+. +...++.+.+. ......
T Consensus 308 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~-----~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~ 379 (481)
T TIGR00879 308 PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRP-----LLL--IGA-AGMAICLFVLGILGASFVTGSSK 379 (481)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH--HHH-HHHHHHHHHHHHHhhcccCCccc
Confidence 6677888999988899999999999999999999999999987 332 111 11111111111 111111
Q ss_pred --chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 129 --STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 129 --~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.........++..+++.+ ..+ ....++.|.+|++.|+++.|+.+...+++++++|.+.+.+.+. .++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~-~~~~~ 450 (481)
T TIGR00879 380 SSGNVAIVFILLFIAFFAMG-WGP-VPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES-IGVGG 450 (481)
T ss_pred chhHHHHHHHHHHHHHHHcc-ccC-eehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCccc
Confidence 111122222222222222 234 5677789999999999999999999999999999999999887 34444
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-12 Score=114.88 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=90.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC-CCCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLP-DDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 133 (329)
|+|.+++|++..+.+.+.+...++.+++.++.|+++||+++|+ ... ....+...+....+...+ ......+.
T Consensus 246 p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~-----~~~--~~~~l~~~~~~~~l~~~~~~~~~~~~~ 318 (402)
T TIGR00897 246 PMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN-----TVR--WFGGVGCGIFTLALYYIPQHFGHSFAV 318 (402)
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh-----HHH--HHHHHHHHHHHHHHHHHHHccCCcHHH
Confidence 7777889999999999888899999999999999999999887 221 111111111111111111 11112333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..+..++.|++.+...+ ....+.+.. +++||+++|+.+...++++.++|.+.|.+.+..
T Consensus 319 ~~~~~~~~G~~~~~~~~--~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 377 (402)
T TIGR00897 319 ALIIAIALGIFLAGYVP--LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF 377 (402)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555666766655433 345666764 567999999999999999999999999999873
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-13 Score=118.54 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=94.2
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+. +.+|.+..+.+.......++.+++.++.|+++||+|||+ ... ....+................ ..+.
T Consensus 243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 314 (394)
T TIGR00883 243 PTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRP-----VLI--IFTVLAALLAVPLLMALLDSG-SFTL 314 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHH--HHHHHHHHHHHHHHHHHhcCC-chHH
Confidence 6555 678999999999999999999999999999999999987 332 111111111111111111111 2333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHH-HHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALD-RSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
.....++.+++.+...+ ...+++.|.+|++.|+++.++. +....+|+.++|.+.|.+.+..+.+.
T Consensus 315 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~ 380 (394)
T TIGR00883 315 FFFLVLGLALIGGMYTG-PMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWY 380 (394)
T ss_pred HHHHHHHHHHHHHHHhh-hHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcch
Confidence 44555666666666666 7889999999999999999985 45556788899999999999853343
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=121.38 Aligned_cols=187 Identities=22% Similarity=0.278 Sum_probs=115.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCc--------------cc--cCCcchhHH----------------
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSR--------------AK--DQKPHKAFC---------------- 50 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~--------------~~--~~~~~~~~~---------------- 50 (329)
+||+++|++.|++++++.++++++..| |.+++.-.. .+ ...++++++
T Consensus 192 ~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~ 271 (466)
T KOG2532|consen 192 LGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGN 271 (466)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHH
Confidence 899999999999999999999888887 655432110 00 122333333
Q ss_pred --HHHH----HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh
Q 041066 51 --FVIF----AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV 123 (329)
Q Consensus 51 --f~~~----~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (329)
+.++ |.|+ +.+|++..+.|++.++..+...+..+++|+++||+-+|.......+. +...++.....+.+..
T Consensus 272 ~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rk--ifn~i~~~~~ai~l~~ 349 (466)
T KOG2532|consen 272 WGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRK--IFNTIAFGGPAVFLLV 349 (466)
T ss_pred HHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHH--HHHhHHHHHHHHHHHe
Confidence 1111 7777 78999999999999999999999999999999998775221111222 1122222222222222
Q ss_pred cCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 124 LPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
....+.......+.++.++.+......+-...-..+. .+++.+..+|+.++...+.+.++|.+.|.+..
T Consensus 350 l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 350 LAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred eeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 2222211111222222222222222221234444454 45679999999999999999999999988874
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-13 Score=116.92 Aligned_cols=178 Identities=11% Similarity=-0.015 Sum_probs=106.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCcc-------ccCCcchhHH------HHHH----------HHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSRA-------KDQKPHKAFC------FVIF----------AYV 57 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~~-------~~~~~~~~~~------f~~~----------~~~ 57 (329)
+++|||+.|++.++++++..+++++.+|| |+++++.... ++.++++.+| ++.. |.|
T Consensus 139 ~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~ 218 (368)
T TIGR00903 139 TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAA 218 (368)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999988888888888888 4332211100 0122345555 1100 777
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 58 VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
+++.|++.. .+.......+.+.++ .++++||.+||+.+. ... ....+........+. .... . .....+
T Consensus 219 L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~--~~~--~~~~~~~a~~~~~~~-~~~~-~--~~~~~~ 286 (368)
T TIGR00903 219 LRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRS--IYI--RAAALLIAAFFLALA-FELN-R--LALFAF 286 (368)
T ss_pred HHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHH--HHH--HHHHHHHHHHHHHHH-Hccc-c--HHHHHH
Confidence 777888865 555555555544444 578888887653110 111 111111111111111 1111 1 122333
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
..+.+++.....+ ..+++.+|.+|++.||++.|+.+..+++++.++|.+.+.+.
T Consensus 287 ~~l~~~~~~~~~~-~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 287 IGIAGLLMLPAYA-IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred HHHHHHhhhhhHH-HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 4444555544444 57788999999999999999999999999999999988776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.8e-13 Score=115.62 Aligned_cols=128 Identities=16% Similarity=0.225 Sum_probs=98.2
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|++.+ .+|.+..+.+.+.+...++.+++.++.+++.||+++|+ ... .......+........+. +.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~---~~~~ 303 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA-----LMT---GAIFVIGLAILVVGLTPP---NFPL 303 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH-----HHH---HHHHHHHHHHHHHHhhch---hHHH
Confidence 77775 48999999999999999999999999999999999886 322 111111122222222211 2444
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+...++++.++|.+.|.+.|.
T Consensus 304 ~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 304 FLVLWFAIGVGYGPINV-PQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888877776 7788999999999999999999999999999999999999886
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=111.60 Aligned_cols=213 Identities=12% Similarity=0.171 Sum_probs=123.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-cc----ccCCcchhHH----H--HH-H---------HHHHHHhC
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS-RA----KDQKPHKAFC----F--VI-F---------AYVVRTIG 62 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~-~~----~~~~~~~~~~----f--~~-~---------~~~~~~~g 62 (329)
.||+....+.+++++++.+++++..+|+...+.+. .. +...++|.++ . .. + .||.+...
T Consensus 180 ~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~ 259 (460)
T PRK11462 180 LGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWIL 259 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcceeccCCCccCCCHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhc
Confidence 47898888888887777777777777732221111 00 1123344443 0 00 0 55555443
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
-++...+.+.....++.+++.+++++++||+++|+ .... ...+..+...+ +...+... .....+..++.|
T Consensus 260 g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~-----~~~~--~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~l~g 329 (460)
T PRK11462 260 GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVT-----IFWW--TNALLAVISLA-MFFVPMQA--SITMFVFIFVIG 329 (460)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHHH--HHHHHHHHHHH-HHHhchhH--HHHHHHHHHHHH
Confidence 34445566677778889999999999999999887 3321 11111111222 22222211 112233344456
Q ss_pred HHhhccCCCCchhHHhhhcC-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCcchhhhhh
Q 041066 143 LCISWNAPTTNNPIFAEIVP-------ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSLEVETDR 215 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 215 (329)
++.+...+ ..++++.|..+ .+..|..++..++..++|.++++.+.|.+++. .||... ...|.+
T Consensus 330 ~~~~~~~~-l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~-~Gy~~~--------~~~q~~ 399 (460)
T PRK11462 330 VLHQLVTP-IQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAY-GGYDAA--------EKAQNS 399 (460)
T ss_pred HHHHHHHH-HHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCC--------CCCCCH
Confidence 66555444 56778888765 45567777888899999999999999999987 577542 123444
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 041066 216 ENAASLAKALYTAIGIPMTIC 236 (329)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~ 236 (329)
+...+++..+....+++.+++
T Consensus 400 ~~~~~i~~~~~~~P~~~~~~~ 420 (460)
T PRK11462 400 ATISIIIALFTIVPAICYLLS 420 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555554444444443333
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-13 Score=118.77 Aligned_cols=130 Identities=15% Similarity=0.111 Sum_probs=88.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+..|+++.+.+.+.+...++.+++.++.|++.||+++|+ ... .+..+.. +..+....... .. ....
T Consensus 255 ~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~-----~~~--~~~~~~~-~~~~~~~~~~~-~~-~~~~ 324 (426)
T PRK12307 255 PTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKK-----TFS--IGLLMSF-LFIFPLFRIPQ-DN-YLLL 324 (426)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH--HHHHHHH-HHHHHHHHHcc-cc-HHHH
Confidence 6667778999999999999999999999999999999999887 332 1211111 11121211121 11 1222
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..+.+..+++.....+ ....++.|.+|++.||++.|+.+...++++.++|.+.|++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~ 384 (426)
T PRK12307 325 GACLFGLMATNVGVGG-LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM 384 (426)
T ss_pred HHHHHHHHHhcccHhH-HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 2222222222222233 45677889999999999999999999999999999999998873
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-12 Score=113.91 Aligned_cols=189 Identities=20% Similarity=0.365 Sum_probs=118.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCC------Ccc-------c-c---C--------CcchhHH------
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRC-SDGK------SRA-------K-D---Q--------KPHKAFC------ 50 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~-~~~~------~~~-------~-~---~--------~~~~~~~------ 50 (329)
..|||+.|++.+++.++..++.+++.+|+++ ...+ .+. + + . .+++.+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (379)
T TIGR00881 146 LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGY 225 (379)
T ss_pred cCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHH
Confidence 5789999999888877777777777666221 1000 000 0 0 0 1122333
Q ss_pred HHH------H----HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHH
Q 041066 51 FVI------F----AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAV 119 (329)
Q Consensus 51 f~~------~----~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 119 (329)
+.. + |.+. +.+|+++.+.+.+.+...++.+++.++.|++.||..+++. .... ............
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~----~~~~-~~~~~~~~~~~~ 300 (379)
T TIGR00881 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRR----GPLA-VFFMALIIVSLL 300 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcc----hHHH-HHHHHHHHHHHH
Confidence 000 0 5555 6789999999999999999999999999999998754431 1111 111111111111
Q ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 120 LLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
.+...+ .. ......+..++.|++.....+ ....+..|.+|++.||++.|+.+...++|+.++|.+.|.+.+. .+|.
T Consensus 301 ~~~~~~-~~-~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~ 376 (379)
T TIGR00881 301 VYWLNP-AA-NPLMDLICLFALGFLVYGPQM-LIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG-FGWA 376 (379)
T ss_pred HHhcCc-ch-hHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh-hccc
Confidence 111111 11 223334444555554444333 4567889999999999999999999999999999999999997 4554
Q ss_pred C
Q 041066 200 P 200 (329)
Q Consensus 200 ~ 200 (329)
.
T Consensus 377 ~ 377 (379)
T TIGR00881 377 G 377 (379)
T ss_pred c
Confidence 3
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.9e-13 Score=118.96 Aligned_cols=184 Identities=13% Similarity=0.188 Sum_probs=115.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc---c---cCCcchhHH------HHH-------H----HHHHH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA---K---DQKPHKAFC------FVI-------F----AYVVR 59 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~---~---~~~~~~~~~------f~~-------~----~~~~~ 59 (329)
.+|||+.|++.+++.++..+..++..+|+.....+.+. + +..++++++ ... + +.|..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (408)
T PRK09874 168 SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVR 247 (408)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999888777777777777763221111100 0 112223322 000 0 44444
Q ss_pred HhCCChh----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 60 TIGFSHG----LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 60 ~~g~s~~----~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
+.+.+.. ..+.+....+++.+++.++.|+++||+++|+ .+. .. .+...+..+..... . ..+.+.
T Consensus 248 ~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~-----~~~--~~-~~~~~~~~~~~~~~---~-~~~~~~ 315 (408)
T PRK09874 248 ELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEK-----ILI--TA-LIFSVLLLIPMSFV---Q-TPLQLG 315 (408)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch-----hHH--HH-HHHHHHHHHHHHHh---c-cHHHHH
Confidence 4333322 2455556677888899999999999999987 332 11 11111222222211 1 123355
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+..++.|++.+...+ ...+.+.+..|++.+|+.+++.+...++|.++||.+.|.+.+. .+|..
T Consensus 316 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~-~g~~~ 378 (408)
T PRK09874 316 ILRFLLGAADGALLP-AVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN-YGFRA 378 (408)
T ss_pred HHHHHHHhhhHhhHH-HHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh-cchhH
Confidence 566677877777666 6677778888889999999999999999999999999999886 34443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-12 Score=110.90 Aligned_cols=179 Identities=13% Similarity=0.140 Sum_probs=115.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc--cccCCcchhHH------HH----------HH-HHHHHHhC
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSR--AKDQKPHKAFC------FV----------IF-AYVVRTIG 62 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~--~~~~~~~~~~~------f~----------~~-~~~~~~~g 62 (329)
+++|||+.|++.+++++++.+..+...||++.++.+.. ..+..+++.++ +. .+ |++.+++|
T Consensus 169 ~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 248 (394)
T PRK10213 169 ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAG 248 (394)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcccccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45799999999887766655555555565322111110 11223445444 00 01 66667889
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
+++...+.+....+++.+++.++.+++.||.+++. +. ....+......++... . . ..+.+.+..++.|
T Consensus 249 ~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~-----l~---~~~~~~~~~~~~l~~~-~--~-~~~~~~~~~~l~G 316 (394)
T PRK10213 249 FGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLA-----LA---GAPLVLAVSALVLTLW-G--S-DKIVATGVAIIWG 316 (394)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhH-----HH---HHHHHHHHHHHHHHHH-h--h-hHHHHHHHHHHHH
Confidence 99999999999999999999999999999954332 11 1111111111121111 1 1 1234445666778
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++.+...+ ...+.+.+..| ++++.+.++.....++|..+|+.+.|.+.|.
T Consensus 317 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~ 366 (394)
T PRK10213 317 LTFALVPV-GWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDN 366 (394)
T ss_pred HHHHhhhH-HHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777666 66767888776 4477888888888899999999999999987
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-12 Score=114.98 Aligned_cols=214 Identities=13% Similarity=0.208 Sum_probs=129.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc------ccCCcchhHH------HHH-H---------HHHHHH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA------KDQKPHKAFC------FVI-F---------AYVVRT 60 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~------~~~~~~~~~~------f~~-~---------~~~~~~ 60 (329)
..||+..+.+.+++++++.+.+++..+|+.....+.+. +...++|.++ +.. . +||.+.
T Consensus 179 ~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 258 (444)
T PRK09669 179 QKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNY 258 (444)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeee
Confidence 35899999998888877777777777763221111110 0113445444 111 0 343332
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVI 140 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (329)
.--++...+.+.....+..+++.++.++++||+|+|+ .+. .+..+..+.....+ ..+ ....+.+.+..++
T Consensus 259 ~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~-----~~~--~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~i 328 (444)
T PRK09669 259 VLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVR-----AFK--WTIVAFVILSALIF-FIP--PSNVWLIFALNIL 328 (444)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHH-----HHH--HHHHHHHHHHHHHH-HhC--cchHHHHHHHHHH
Confidence 2223344445555666788889999999999999987 332 11111111122122 222 1223345555667
Q ss_pred HHHHhhccCCCCchhHHhhhcC-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCcchhhh
Q 041066 141 MGLCISWNAPTTNNPIFAEIVP-------ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSLEVET 213 (329)
Q Consensus 141 ~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 213 (329)
.|++.+...+ ..+++++|+.+ .+..|..+|+.+++.++|.++|+.+.|.+++. .+|... ...|
T Consensus 329 ~g~~~~~~~~-~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~-~Gy~~~--------~~~q 398 (444)
T PRK09669 329 FNFIQNLTTP-LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW-VDYVGG--------AAVQ 398 (444)
T ss_pred HHHHHHHHHH-HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCC--------CCCC
Confidence 7887777666 78899998874 45567889999999999999999999999997 566542 1235
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 041066 214 DRENAASLAKALYTAIGIPMTIC 236 (329)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~ 236 (329)
.++...+++..+....++..+++
T Consensus 399 ~~~~~~~i~~~~~~~p~~~~~~~ 421 (444)
T PRK09669 399 SASVLTTINLLFTVIPGVLFAGM 421 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666655555544444333
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-12 Score=116.38 Aligned_cols=125 Identities=21% Similarity=0.206 Sum_probs=86.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+..+.|++ ..+...+...++.+++.++.|++.||+++|+ ... ...+....+...+... ++ .+..
T Consensus 240 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~---~~~~~~~~~~~~~~~~---~~-~~~~ 305 (399)
T PRK05122 240 TLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLR-----VAI---VSLLVEILGLLLLWLA---PS-PWMA 305 (399)
T ss_pred HHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH---HHHHHHHHHHHHHHHh---cc-HHHH
Confidence 4445555663 4566667788889999999999999999887 322 1112222222222221 12 2334
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ .......+..|+++||+++|+++...++|..+++.+.|.+.+.
T Consensus 306 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 306 LIGAALTGFGFSLVFP-ALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777776666 5556677888999999999999999999999999999999887
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=9e-13 Score=116.38 Aligned_cols=132 Identities=17% Similarity=0.211 Sum_probs=103.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+++|++..+.+++.+...++..++.++.|+++||+|||+. +. .+ .+...++........ ..+.+
T Consensus 18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-----~~--~~-~~~~~~~~~~~~~~~----~~~~~ 85 (399)
T TIGR00893 18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-----LA--VF-IVIWGVFTGLQAFAG----AYVSL 85 (399)
T ss_pred HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-----eH--HH-HHHHHHHHHHHHHHc----CHHHH
Confidence 77778999999999999999999999999999999999999983 22 11 111112222222211 34557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ....++.|.+|+++|+.++++.+...++|..+++.+.+.+.+. .+|+.
T Consensus 86 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~ 149 (399)
T TIGR00893 86 YILRVLLGAAEAPFFP-GIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIH-FSWQW 149 (399)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHh-CCchH
Confidence 7788888999888777 7889999999999999999999999999999999999988776 34443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.4e-12 Score=111.32 Aligned_cols=179 Identities=12% Similarity=-0.007 Sum_probs=117.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCcc-------ccCCcchhHH------HHH---------H-HHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDT-RCSDGKSRA-------KDQKPHKAFC------FVI---------F-AYV 57 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p-~~~~~~~~~-------~~~~~~~~~~------f~~---------~-~~~ 57 (329)
+++|||+.|++.+.. +++.+..++..|++ +.++.+.+. .+..++|++| +.. + |.+
T Consensus 153 ~~~g~~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 231 (382)
T TIGR00902 153 GMFDEQNILAILTAG-LAFMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIY 231 (382)
T ss_pred HHcChhHHHHHHHHH-HHHHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999987655 33333333334432 211111000 1123455555 110 0 656
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 58 VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
.+++|.+..+.|++.....++.+++.++.+++.||+|.|+ ++. ...+...+....+.. .+ ..+.+...
T Consensus 232 l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~-----~l~---~~~~~~~~~~~~~~~---~~-~~~~~~~~ 299 (382)
T TIGR00902 232 WQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD-----LLL---ISAIACVGRWAIIGA---IE-AFPLIFLL 299 (382)
T ss_pred HHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-----HHH---HHHHHHHHHHHHHHh---Hh-hHHHHHHH
Confidence 6779999999999999989999999999999999999987 322 222222222222221 22 23445566
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHH-HHHHHhhhHHHHHHHHhhhh
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRS-FESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 195 (329)
.++.|++.+...+ ....++.+. |+++++++.++++. ...+|.++++.++|.+.|..
T Consensus 300 q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 300 QILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888877777 677788887 88889999999874 56688999999999999984
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=114.52 Aligned_cols=183 Identities=11% Similarity=0.118 Sum_probs=112.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---C-CC--ccc-------cCCcchhHH--------H----HHH----
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSD---G-KS--RAK-------DQKPHKAFC--------F----VIF---- 54 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~---~-~~--~~~-------~~~~~~~~~--------f----~~~---- 54 (329)
.+|+++|++.+++.++..++.++..++++++. + +. +.+ +..+++.+| + ..+
T Consensus 167 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 167 INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQF 246 (420)
T ss_pred cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHH
Confidence 48999999988777666666555554432211 0 00 000 012334333 0 000
Q ss_pred HHHH-HH---hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 041066 55 AYVV-RT---IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPST 130 (329)
Q Consensus 55 ~~~~-~~---~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
|.+. +. .+.+..+.|++.+...++.+++.++.|+++||+|+|+ .+. ...+...+....+.. .++
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~~~---~~~~l~~~~~~l~~~---~~~- 314 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKN-----ALL---LAGTIMAVRIIGSGF---ATG- 314 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-----hhH---HHHHHHHHHHHHHHh---ccc-
Confidence 4444 22 2566678889999888999999999999999999998 322 222222222222222 122
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHH-HHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYAL-DRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+....++.+++.+...+ ....++.+..|++.+++..++ +++..++|+++++.+.|++.|. .+|..
T Consensus 315 ~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~-~G~~~ 383 (420)
T PRK09528 315 PLEVSILKLLHAFEVPFLLV-GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDS-IGFQG 383 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHh-hCchH
Confidence 22344455556666555444 456778888899999888766 6788889999999999999997 35544
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=113.80 Aligned_cols=132 Identities=14% Similarity=0.133 Sum_probs=101.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+..+.+.+..+.+++.+...++.+++.++.|+++||+|||+ .+. .+..+...................+.+
T Consensus 23 ~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (365)
T TIGR00900 23 PLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKK-----VMI--GADLIRAVLVAVLPFVALLGGLNIWQV 95 (365)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhH-----HHH--HHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 7788889999999999999999999999999999999999998 333 111111111111111111111234556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.+.
T Consensus 96 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 154 (365)
T TIGR00900 96 YVLAGILAIAQAFFTP-AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYAT 154 (365)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888777 7889999999999999999999999999999999999998876
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.6e-12 Score=112.37 Aligned_cols=182 Identities=9% Similarity=0.033 Sum_probs=110.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc----cCCcchhHH--------HHH--------HHHHHHHhC
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAK----DQKPHKAFC--------FVI--------FAYVVRTIG 62 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~----~~~~~~~~~--------f~~--------~~~~~~~~g 62 (329)
.+|||++|++.+++.++..++..+..|+++.++.+.+.+ +..++++++ ++. +|++.++.+
T Consensus 160 ~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 160 QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccccchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 368999999988777766666555666532211111100 112233333 110 077776666
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIM 141 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (329)
.++.+.+++.+...++..++....+++.|| ++.++ ... ...+...++...+... +. .+.+.+..++.
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~---~~~~~~~~~~~~l~~~---~~-~~~~~~~~~l~ 307 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEH-----RLM---AGLLIMSLSMFPIGMV---SN-LQQLFTLICLF 307 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhH-----HHH---HHHHHHHHHHHHHHHh---hh-HHHHHHHHHHH
Confidence 677888888887777666555555555554 44443 111 1111122222222211 11 22233344555
Q ss_pred HHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcC
Q 041066 142 GLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHG 197 (329)
Q Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~ 197 (329)
+++.+...| ...+++.+..|++++|+++|+.++..++|..+||.+.|.+.+..++
T Consensus 308 ~~g~~~~~p-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~ 362 (400)
T PRK11646 308 YIGSIIAEP-ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA 362 (400)
T ss_pred HHHHHHHHc-cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 666666566 6788899999999999999999999999999999999999998543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=110.82 Aligned_cols=212 Identities=16% Similarity=0.301 Sum_probs=144.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCCCCcc-------ccCCcchhHH------HHH-H---------HHHHH-
Q 041066 5 GWRITFHLVGLISVIVGILVYLFAKDT-RCSDGKSRA-------KDQKPHKAFC------FVI-F---------AYVVR- 59 (329)
Q Consensus 5 gWr~~f~i~~~~~~~~~i~~~~~~~~p-~~~~~~~~~-------~~~~~~~~~~------f~~-~---------~~~~~- 59 (329)
||++.+++.+++.++..++..+..||. +....+.+. +...++|.++ +.. + +||.+
T Consensus 175 ~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 254 (428)
T PF13347_consen 175 GYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTY 254 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 799999999999999988888888882 111111111 1123344444 110 1 66664
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
.+|.+ ...+.+.....++.+++.++.++++||+|+|+ .+. .+..+.. .+.+.+...+. ...+...+..+
T Consensus 255 vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~-----~~~--~~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~ 323 (428)
T PF13347_consen 255 VLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKK-----VYI--IGLLLAA-LGFLLLFFLGP--GSPWLVLILFI 323 (428)
T ss_pred HhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHcccee-----ehh--hhHHHHH-HHHHHHHHHHh--hhHHHHHHHHH
Confidence 45555 66777788889999999999999999999998 332 2222222 22222222221 23455677777
Q ss_pred HHHHHhhccCCCCchhHHhhhcC-------CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCcchhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVP-------ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSLEVE 212 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 212 (329)
+.|++.+.... ..+++++|+.+ .+..|..+|+.++...++.++++.+.+.+.+. .+|... ...
T Consensus 324 l~gi~~~~~~~-~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~-~Gy~~~--------~~~ 393 (428)
T PF13347_consen 324 LAGIGYGAFFV-IPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLAL-VGYDAN--------AAV 393 (428)
T ss_pred HhHhhhccccc-ccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHH-hCcCCC--------cCc
Confidence 88888887776 78899998875 45679999999999999999999999999987 677664 135
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 041066 213 TDRENAASLAKALYTAIGIPMTICC 237 (329)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (329)
|.++...+++..+....+++.+++.
T Consensus 394 q~~~~~~~i~~~~~~~p~~~~~~~~ 418 (428)
T PF13347_consen 394 QSASALSGIRILFSIVPAIFLLLAI 418 (428)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777776666655555444
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.2e-12 Score=110.61 Aligned_cols=183 Identities=16% Similarity=0.141 Sum_probs=113.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc---ccCCcchhHH------------HHHH----HHHHHHhC
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA---KDQKPHKAFC------------FVIF----AYVVRTIG 62 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~---~~~~~~~~~~------------f~~~----~~~~~~~g 62 (329)
+++|||+.|++.+++.++..+..++..+++++++.+.+. ++..++++++ +..+ |++.+++|
T Consensus 155 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g 234 (401)
T PRK11043 155 NHFGWQAIFATLFAITLLLILPTLRLKPSKKARKQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMG 234 (401)
T ss_pred hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcC
Confidence 457999999998888777666555544443221111110 0112233332 1111 77777789
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHH-HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQ-ISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIM 141 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (329)
+++.+.++......++.+++.++.+++.||+++|+ ..... ....++. ......... ..+. .+...+...+.
T Consensus 235 ~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~-~~~~-~~~~~~~~~~~ 306 (401)
T PRK11043 235 YSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQ-----LLPWLLVLFAVSV-IAIWLASLL-SHPS-LVPLLIPFCVM 306 (401)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHHHHHHHHHHHH-HHHHHHHHh-ccCc-HHHHHHHHHHH
Confidence 99999999888888899999999999999999886 32211 1111111 111111111 1122 23334445556
Q ss_pred HHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 142 GLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+++.+...+ ...+...+..| +++|++.|+.+..+..++.+++.+.|.+.+.
T Consensus 307 ~~~~~~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~ 357 (401)
T PRK11043 307 AAANGAIYP-IVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST 357 (401)
T ss_pred HHHHHHHHH-HHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 666666666 55666666655 5699999999999999999999998888663
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-12 Score=111.75 Aligned_cols=134 Identities=18% Similarity=0.218 Sum_probs=95.9
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+. +.+|++..+.+.+.+...++.+++.++.|++.||+++|+ .+. ....+.. ......... .. ..+.
T Consensus 262 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~-----~~~--~~~~~~~-~~~~~~~~~--~~-~~~~ 330 (405)
T TIGR00891 262 PTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRK-----AYV--CSLLAGQ-LLIIPVFAI--GA-NVAV 330 (405)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchh-----hhH--HHHHHHH-HHHHHHHHh--CC-chHH
Confidence 5444 678999999999999999999999999999999999987 322 1111111 111111111 11 1233
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.+..++.+++.+...+ ....++.|.+|++.|++++|+.+...++++.++|.+.|.+.+..+.|..
T Consensus 331 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~ 396 (405)
T TIGR00891 331 LGLGLFFQQMLVQGIWG-ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGT 396 (405)
T ss_pred HHHHHHHHHHHHccchh-hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 34444555555555455 6778899999999999999999999999999999999999998544544
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-11 Score=111.15 Aligned_cols=163 Identities=12% Similarity=0.008 Sum_probs=105.8
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|+|. +.+|.++...++......++.+++.++.+++.||+|+|+ .+. ++.. ...++.+.+...+. ...+.
T Consensus 252 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~-----~~~--~g~~-~~~i~~~~~~~~~~--~~~~~ 321 (448)
T PRK09848 252 LFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN-----TFL--IGAL-LGTCGYLLFFWVSV--WSLPV 321 (448)
T ss_pred eeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH--HHHH-HHHHHHHHHHHcCc--hhHHH
Confidence 5555 457777666666555556778889999999999999887 332 2222 22222222222221 12333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCC-------cchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPE-------RSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGAS 206 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 206 (329)
..+..++.|++.+...+ ..+++.+|..+. +.+|..+|+.++.+.+|.++++.+.+.+++. .+|...
T Consensus 322 ~~~~~~l~g~G~~~~~~-~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~-~G~~~~----- 394 (448)
T PRK09848 322 ALVALAIASIGQGVTMT-VMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL-SGYIAN----- 394 (448)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCC-----
Confidence 44556667777777666 678888888754 3469999999999999999999999999887 566542
Q ss_pred CcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041066 207 NSLEVETDRENAASLAKALYTAIGIPMTICCF 238 (329)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (329)
..|.+....+++..+....+++.+++.+
T Consensus 395 ----~~~~~~~~~~i~~~~~~~p~~~~~~~~~ 422 (448)
T PRK09848 395 ----QVQTPEVIMGIRTSIALVPCGFMLLAFV 422 (448)
T ss_pred ----CcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2245555666766655555454444443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=112.36 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=103.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+++|++..+.+++.+...++.+++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~ 108 (398)
T TIGR00895 41 PAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR-----VLL---WSILLFSVFTLLCALA---T-NVTQL 108 (398)
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH-----HHH---HHHHHHHHHHHHHHHc---c-chHHH
Confidence 6777889999999999999999999999999999999999987 332 2222222222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+. .+|..
T Consensus 109 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~ 172 (398)
T TIGR00895 109 LILRFLAGLGLGGLMP-NLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV-FGWRS 172 (398)
T ss_pred HHHHHHHhcccccchh-hHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc-cccee
Confidence 6677888888887777 7899999999999999999999999999999999999998876 45554
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-12 Score=110.55 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=90.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.++.|++. .++......++.+++.++.|++.||+|+|+ .+. .......++.+.+... ++ .+..
T Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~---~~~~~~~~~~~~~~~~---~~-~~~~ 305 (392)
T PRK12382 240 SLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVK-----VAI---VSLLVETVGLLLLWLA---PT-AWVA 305 (392)
T ss_pred HHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCe-----ehH---HHHHHHHHHHHHHHHc---cc-HHHH
Confidence 55556667653 556666777888999999999999999987 322 1111111222222221 22 2334
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+.+.+..|+++||++.|+.+...++|++++|.+.|.+.+. .+|..
T Consensus 306 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-~g~~~ 369 (392)
T PRK12382 306 LAGAALTGAGCSLIFP-ALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-FGYPS 369 (392)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchH
Confidence 4556667777776566 5667788888999999999999999999999999999999987 34544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-12 Score=114.87 Aligned_cols=132 Identities=19% Similarity=0.281 Sum_probs=101.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..+.+++.+...++..++.++.|+++||+|+|+ .+. ...+...++.+.... .+ ..+.+
T Consensus 47 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~---~~-~~~~l 114 (434)
T PRK11663 47 PEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY-----FMG---IGLIATGIINILFGF---SS-SLWAF 114 (434)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch-----hHH---HHHHHHHHHHHHHHH---Hh-HHHHH
Confidence 7777889999999999999999999999999999999999998 322 222222222222222 12 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.+.+|+++|++++|+.+...++|+.+++.+.+.+.+. .+|+.
T Consensus 115 ~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~-~gw~~ 178 (434)
T PRK11663 115 ALLWVLNAFFQGWGWP-VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH-YGWRY 178 (434)
T ss_pred HHHHHHHHHHHHccch-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccHHH
Confidence 5566677888777666 7788999999999999999999999999999999999998876 34444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=108.85 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=91.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHH-HHHHHHHHHHHHHHhcCCCCchhH-
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQI-SSGSVIPIAAVLLLVLPDDPSTGF- 132 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~- 132 (329)
..+++..|++..++.+.....++...+.++++.++.||+|||+ +++... .+.+...+..+..........+..
T Consensus 294 t~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp-----Lll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y 368 (485)
T KOG0569|consen 294 TSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP-----LLLISLSLMAVALLLMSIALFLSNSFGSWLSY 368 (485)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4456788999999999999999999999999999999999998 443211 111111111111111111111111
Q ss_pred HHHHHHHHHHHHhhcc-CCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcC
Q 041066 133 MHGLVLVIMGLCISWN-APTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHG 197 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~ 197 (329)
..+++.++..++.+.. +| +.+-+.+|++|++.|+.+.++..++..+...+.......+.+..++
T Consensus 369 ~~i~~~~~~~~~f~~G~gp-i~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 369 LCIAAIFLFIISFAIGPGP-IPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred HHHHHHHHHHHhhhcCCCc-hhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122223333333222 44 7899999999999999999999999999998888888888777544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-11 Score=109.80 Aligned_cols=186 Identities=18% Similarity=0.269 Sum_probs=99.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-c--------cCCcchhHH--------HHH-------H--HHH
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-K--------DQKPHKAFC--------FVI-------F--AYV 57 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-~--------~~~~~~~~~--------f~~-------~--~~~ 57 (329)
+|||.+|++.+++.++..+. .+..|||+....+.+. + +..++|.++ +.. + +++
T Consensus 158 ~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l 236 (402)
T PRK11902 158 LGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFL 236 (402)
T ss_pred cCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 59999999988876655443 4556665332211110 0 112233333 000 0 445
Q ss_pred HHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 041066 58 VRTIGFSHGLTVFLMTLFT-IAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGL 136 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~-i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
.+.+|+++.+.+++....+ ++.+++.+++|++.||+++|+ ... ....+ ..+..+.+......+...+.+..
T Consensus 237 ~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~-----~l~--~~~~~-~~l~~l~~~~~~~~~~~~~~~~~ 308 (402)
T PRK11902 237 IRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYR-----SLM--LFGVL-QAVSNLGYWVLAVTPKHLWTMAL 308 (402)
T ss_pred HHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH-----HHH--HHHHH-HHHHHHHHHHHHhcCCcHHHHHH
Confidence 5778999999999886654 568999999999999999887 322 11111 11111111111111111222333
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 137 VLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
..++.++..+.... ...+........+..++..++.+...+++..+++.++|.+.|. .+|..
T Consensus 309 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~-~G~~~ 370 (402)
T PRK11902 309 AIGIENLCGGMGTA-AFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA-YGWPG 370 (402)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHH
Confidence 33222222222221 2333444444444445566777777778887777789999988 44443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.7e-13 Score=115.90 Aligned_cols=132 Identities=15% Similarity=0.186 Sum_probs=100.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+++|++..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.++.... + ..+.+
T Consensus 19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~ 86 (379)
T TIGR00881 19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRV-----FLP---IGLILCAIVNLFFGFS---T-SLWVM 86 (379)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCee-----hhH---HHHHHHHHHHHHHHHh---h-hHHHH
Confidence 7777889999999999999999999999999999999999998 332 2222222222222221 1 34556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHH-HHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPP-VVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~-~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+...++|..+++. +.+.+.+. .+|..
T Consensus 87 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~ 151 (379)
T TIGR00881 87 AALWALNGIFQGMGWP-PCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL-YSWHW 151 (379)
T ss_pred HHHHHHHHhhccccCC-chHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc-CCchh
Confidence 7778888988888777 78899999999999999999999999999999995 44444443 34443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=109.04 Aligned_cols=178 Identities=18% Similarity=0.228 Sum_probs=111.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc-------cCCcchhHH---H---------HHH----HHHH-
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAK-------DQKPHKAFC---F---------VIF----AYVV- 58 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~-------~~~~~~~~~---f---------~~~----~~~~- 58 (329)
++|||++|++.+++.++..+..++..||++....+.+.+ +..++++++ + ..+ |++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (385)
T TIGR00710 155 WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYI 234 (385)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 579999999988887777777777677633222111111 112334443 0 000 6555
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLP-DDPSTGFMHGLV 137 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 137 (329)
+.+|+++.+.+++.+...++.+++.++.|++.||+++|+ ... .+..+ ..++.+.+.... ............
T Consensus 235 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~-----~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (385)
T TIGR00710 235 DIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKS-----LLR--MGLIL-FAVSAVLLEITAILGLGSWAMIIGP 306 (385)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HHH--HHHHH-HHHHHHHHHHHHHhccchHHHHHHH
Confidence 589999999999999999999999999999999999887 322 11111 111111111111 111223334444
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHH
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGL 190 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~ 190 (329)
.++.|++.+...+ .......|..| +.++++.++.+...+.++.+.+++.+.
T Consensus 307 ~~~~g~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 307 MMFVGIGNSMISS-IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHHHHH-HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566776666566 56677777766 569999999999988877666666663
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-12 Score=109.45 Aligned_cols=131 Identities=17% Similarity=0.013 Sum_probs=100.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|+.+.|++.+.+.++..++.++.|+++||+|||+ +.. ........+.... ... . ....+
T Consensus 15 p~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~-----~~~---~~~~~~~~~~~~~-~~~--~-~~~~l 82 (368)
T TIGR00903 15 SLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRW-----FLF---GSLATFAAAAGRL-LDP--F-NYEWL 82 (368)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-----HHH---HHHHHHHHHHHHH-HHh--c-cHHHH
Confidence 7788999999999999999999999999999999999999886 322 2222221221111 111 1 35567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+.. + .....++|.+|+++|++++++.+....+|..+++.+.+.+.+. .+|+.
T Consensus 83 ~~~R~l~G~g~~~~-~-~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~-~gWr~ 145 (368)
T TIGR00903 83 LACQLLAALGQPFL-L-NAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA-GGLQL 145 (368)
T ss_pred HHHHHHHHhHhHHH-H-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHH
Confidence 88888889888753 3 4566678999999999999999999999999999999888775 45555
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.5e-12 Score=115.25 Aligned_cols=131 Identities=15% Similarity=0.055 Sum_probs=78.1
Q ss_pred HHHHHHhCCChhHHHH------------HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH
Q 041066 55 AYVVRTIGFSHGLTVF------------LMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL 122 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~------------~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
|.+++..|++....+. ......++.+++.++.++++||+|||+ ++. .+..+..+...+...
T Consensus 312 p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~-----~l~--~~~~~~~~~~~~l~~ 384 (502)
T TIGR00887 312 KVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKP-----IQL--MGFFILTVLFFVLGF 384 (502)
T ss_pred HHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchh-----HHH--HHHHHHHHHHHHHHH
Confidence 6666777886543211 122344566778899999999999998 332 111111111111111
Q ss_pred hcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 123 VLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
........ ..+....+...++.....+ ..+.+..|++|++.|+++.|+.+.++.++++++|.+.+.+.+.
T Consensus 385 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~ 454 (502)
T TIGR00887 385 AYNHLSTH-GFLAIYVLAQFFANFGPNA-TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH 454 (502)
T ss_pred HHHhcchh-HHHHHHHHHHHHHhcCCCc-hhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence 11111111 1111121222222222234 5678889999999999999999999999999999999998875
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-12 Score=112.64 Aligned_cols=127 Identities=13% Similarity=0.182 Sum_probs=100.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 29 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~ 96 (385)
T TIGR00710 29 PEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP-----VLL---LGLFIFALSSLGLALS---N-NIETL 96 (385)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHH---HHHHHHHHHHHHHHHH---c-cHHHH
Confidence 7778899999999999999999999999999999999999987 332 2222222222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....+|..+++.+.+.+.+.
T Consensus 97 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 155 (385)
T TIGR00710 97 LVLRFVQAFGASAGSV-ISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVW 155 (385)
T ss_pred HHHHHHHHcchhHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888877666 7788999999999999999999999999999999999988876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=106.11 Aligned_cols=133 Identities=19% Similarity=0.241 Sum_probs=111.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..++|++.+.+..+..++.++...+.+|+.||+ +++ .....+.++-+..... + ++..+
T Consensus 37 p~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~-----lLl---~~l~lFi~~n~l~alA---p-~f~~L 104 (394)
T COG2814 37 PPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR-----LLL---GLLALFIVSNLLSALA---P-SFAVL 104 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH-----HHH---HHHHHHHHHHHHHHHh---c-cHHHH
Confidence 8888999999999999999999999999999999999999998 433 3333333333333332 2 46678
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
.+..++.|+..+...+ ...++..+++|+++|+++.++......+...+|.+++.++-+. .+|+..
T Consensus 105 l~aR~~~g~a~G~f~~-i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~-~GWR~~ 169 (394)
T COG2814 105 LLARALAGLAHGVFWS-IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQL-FGWRAT 169 (394)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHH-hhHHHH
Confidence 9999999999999888 8899999999999999999999999999999999999999888 566653
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=102.00 Aligned_cols=185 Identities=14% Similarity=0.197 Sum_probs=123.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---CccccCCcchhHH-------------HHHH---HHHHHHhCCC
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGK---SRAKDQKPHKAFC-------------FVIF---AYVVRTIGFS 64 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~---~~~~~~~~~~~~~-------------f~~~---~~~~~~~g~s 64 (329)
.|||..+.+-+.++++..++++.....++..... ....+..+++.-| |+.+ |.+..+.|+|
T Consensus 162 ~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~s 241 (395)
T COG2807 162 GGWRGALGFWALLALLALLIWLPQALREQAASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLS 241 (395)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCC
Confidence 4799999998888777776665542111111111 1111234455555 2222 8888899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 041066 65 HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (329)
..++|.+.+...+..+..++....+.+|...+++ +. .....+...+.+.+...+.... .+. .+++|++
T Consensus 242 a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~----~~---~~~~~~~l~G~~G~~~~P~~~~---~lw--~~llG~G 309 (395)
T COG2807 242 AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRP----LV---VLALLLMLVGLVGLLLAPGQLP---ILW--ALLLGLG 309 (395)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch----HH---HHHHHHHHHHHHHHHHhhhhHH---HHH--HHHHhCc
Confidence 9999999999999999999999999998554442 22 2233333334444433443322 122 4677888
Q ss_pred hhccCCCCchhHHhhh-cCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 145 ISWNAPTTNNPIFAEI-VPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
.+..++ ...+.+.+- ..++..+.-+|+.+.++++-.++||.+.|++.|..++|...
T Consensus 310 ~G~~F~-laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~ 366 (395)
T COG2807 310 QGGAFP-LALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAP 366 (395)
T ss_pred cchHHH-HHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHH
Confidence 777777 555555544 34567888899999999999999999999999998877663
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.2e-12 Score=113.10 Aligned_cols=124 Identities=21% Similarity=0.240 Sum_probs=93.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+.+|++..+.+.+.+...++.+++.++.|+++||+++|+ ... ...+............ . .....
T Consensus 274 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~ 341 (398)
T TIGR00895 274 PKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRV-----TAL---LLLLGAVFAVLVGSTL---F-SPTLL 341 (398)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-----HHH---HHHHHHHHHHHHHHHh---h-CHHHH
Confidence 6666788999999999999999999999999999999999874 322 1111111111111111 1 12334
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
.+..++.|++.+...+ ...+++.|.+|++.|+++.|+.+.+.++|++++|.+.|.+
T Consensus 342 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 342 LLLGAIAGFFVNGGQS-GLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 5556677777776666 7889999999999999999999999999999999999875
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.9e-12 Score=112.13 Aligned_cols=126 Identities=16% Similarity=0.062 Sum_probs=100.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+.+.++..++.++.|++.||+|||+ .+. ...+...+..+..... + ..+.+
T Consensus 32 ~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~l 99 (412)
T TIGR02332 32 LTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR-----WIA---GIMVLWGIASTATMFA---T-GPESL 99 (412)
T ss_pred HhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH-----HHH---HHHHHHHHHHHHHHHh---c-CHHHH
Confidence 6677899999999999999999999999999999999999998 332 2222222222222221 2 23456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+..++.|++.+...+ ....++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+
T Consensus 100 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 157 (412)
T TIGR02332 100 YLLRILVGIAEAGFLP-GILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILA 157 (412)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7778889999888777 667889999999999999999999999999999999998875
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-11 Score=105.75 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=90.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.++.|++..+.+.+.+...++.++++++.|++.||+++|+. ... ...+...++.+.+...+. . ...
T Consensus 221 p~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~----~~~---~~~~~~~~~~~~~~~~~~-~--~~~- 289 (355)
T TIGR00896 221 PAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG----IVA---VLAVLQLVGLCGLLFAPM-H--GLW- 289 (355)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH----HHH---HHHHHHHHHHHHHHHhhh-h--HHH-
Confidence 77777789999999999999999999999999999999965441 211 111111122222222111 1 111
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhc-CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIV-PERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
...++.|++.+...+ ...+.+.+.. ++++++...++.+...+++++++|.+.|.+.|..++|.
T Consensus 290 -~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~ 353 (355)
T TIGR00896 290 -AWALVLGLGQGGAFP-LALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL 353 (355)
T ss_pred -HHHHHHHHhhhhHhH-HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 134566777776666 4455555443 45677899999999999999999999999999866554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.8e-11 Score=103.11 Aligned_cols=166 Identities=23% Similarity=0.506 Sum_probs=120.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccccCCcchhHH------HH----------HHHHHHH-HhCCCh
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAKDQKPHKAFC------FV----------IFAYVVR-TIGFSH 65 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~~------f~----------~~~~~~~-~~g~s~ 65 (329)
..+||+.|++.+++.++..+...+.. |.++ +. ..|.+.+ .+|.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (352)
T cd06174 149 SLGWRWLFLILAILGLLLALLLLFLL------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSA 210 (352)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCH
Confidence 45799999998887776666555443 2233 00 0155554 459999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-CCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 041066 66 GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL-PNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 66 ~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (329)
.+.+...+...++..++.++.+++.||+++|+ . +. .+. +...++.+..... . ..+...+..++.|++
T Consensus 211 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~---~~~-~~~~i~~~~~~~~---~-~~~~~~~~~~~~g~~ 278 (352)
T cd06174 211 AEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL----LL---IGL-LLAALGLLLLALA---P-SLALLLVALLLLGFG 278 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HH---HHH-HHHHHHHHHHHHh---c-cHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999886 2 11 111 1121222222221 1 144566777788888
Q ss_pred hhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 145 ISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+...+ ...+++.|..|+++|++.+|+.+...+++..+++.+.+.+.+. .++..
T Consensus 279 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~-~~~~~ 332 (352)
T cd06174 279 LGFAFP-ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDT-GGYGG 332 (352)
T ss_pred Hhccch-hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcch
Confidence 888777 8899999999999999999999999999999999999999875 34444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.3e-12 Score=109.42 Aligned_cols=166 Identities=14% Similarity=0.159 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-c--------cCCcchh---HH------H-HH-----H----H
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-K--------DQKPHKA---FC------F-VI-----F----A 55 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-~--------~~~~~~~---~~------f-~~-----~----~ 55 (329)
++||.+|++.++..++..+..++..|||.+.....++ . ...+++. ++ + +. . |
T Consensus 154 ~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (356)
T TIGR00901 154 TLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTT 233 (356)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4599999998887666555555556775432111100 0 0112222 33 0 00 0 6
Q ss_pred HHHHHhCCChhHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc-CCC------
Q 041066 56 YVVRTIGFSHGLTVFLMTLFT-IAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL-PDD------ 127 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~-i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------ 127 (329)
+|.+++|+++.+.+.+....+ ++.+++.+++|++.||+|+|+ .+. ....+ ..+....+... ...
T Consensus 234 ~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~-----~l~--~~~~~-~~~~~~~~~~~~~~~~~~~~~ 305 (356)
T TIGR00901 234 LFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILY-----ALL--LFGIV-QALTNAGFVWLASNGHHDGIT 305 (356)
T ss_pred HHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHH--HHHHH-HHHHHHHHHHHHhcCcccccc
Confidence 666669999999998887665 678899999999999999887 322 11111 11222211111 111
Q ss_pred CchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHH
Q 041066 128 PSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFES 178 (329)
Q Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 178 (329)
....+.+..+.++.+++.+...+ ...+++++.+|+++||+.+|+.+...+
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 306 FPHLLMLFLTITLEAVTGGLGTV-AFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 01234455556666777777676 789999999999999999999987764
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-11 Score=106.32 Aligned_cols=175 Identities=11% Similarity=0.090 Sum_probs=98.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc--c-------cCCcchhHH------HH-------HH---HH-
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA--K-------DQKPHKAFC------FV-------IF---AY- 56 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~--~-------~~~~~~~~~------f~-------~~---~~- 56 (329)
.+|||+.|++.+++.++..+...+..||+..+.++.+. + +..+++.++ +. .. |+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (377)
T PRK11102 141 WFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFV 220 (377)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 46999999998888777777776777763221111110 0 012233333 00 00 44
Q ss_pred HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 041066 57 VVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGL 136 (329)
Q Consensus 57 ~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
+.+.+|+++.+.+++.....++.+++.++.|++.||+|+|+ .+. ....+....+...... ...+...+...+
T Consensus 221 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 292 (377)
T PRK11102 221 YIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALN-----MLR--FGLWIQFIMGIWLVVS-ALLDLGFWALVV 292 (377)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHH--HHHHHHHHHHHHHHHH-HHHhhhHHHHHH
Confidence 44678999999999999999999999999999999999987 332 1111111111111111 001111222222
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHH-HHhhhHHHH
Q 041066 137 VLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFES-ILASFAPPV 187 (329)
Q Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~ 187 (329)
...+.+.+.+...+ .....+.|..| +.+|++.++.+.... ++..+++.+
T Consensus 293 ~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 293 GVAAFVGCVSMISS-NAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHhhH-HHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333233 34555667655 779999999877654 333444443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.2e-11 Score=107.87 Aligned_cols=96 Identities=17% Similarity=0.242 Sum_probs=67.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc------cCCcchhHH-------HH-----HH----HHHH-
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAK------DQKPHKAFC-------FV-----IF----AYVV- 58 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~------~~~~~~~~~-------f~-----~~----~~~~- 58 (329)
+.+|||+.|++.+++.++..++.++.+||++.++.+.+.. +..+++.++ +. .+ |++.
T Consensus 152 ~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (392)
T PRK10473 152 LKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLM 231 (392)
T ss_pred hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 3579999999998888887777777777733221111110 112233333 00 00 5554
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
+.+|++..+.+.+.+...++.+++.++.+++.||+|+|+
T Consensus 232 ~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~ 270 (392)
T PRK10473 232 EQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT 270 (392)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 678999999999999999999999999999999999987
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=110.65 Aligned_cols=132 Identities=8% Similarity=0.083 Sum_probs=102.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.|+.+.++..+.+.++..++.++.|+++||+|||+ ++. ...+...++.+..... + +.+.+
T Consensus 33 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~l 100 (390)
T PRK03545 33 SDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK-----LLI---GLFVLFIASHVLSALA---W-NFTVL 100 (390)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH-----HHH---HHHHHHHHHHHHHHHh---c-cHHHH
Confidence 6777899999999999999999999999999999999999998 333 2222222222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.+.+|+++|+.+.|+.....++|..++|++.+.+.+. .+|+.
T Consensus 101 ~~~r~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 164 (390)
T PRK03545 101 LISRIGIAFAHAIFWS-ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQY-LGWRT 164 (390)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHH-hcHHH
Confidence 6677788888776666 6788899999999999999999999999999999999988776 34444
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=112.32 Aligned_cols=132 Identities=17% Similarity=0.341 Sum_probs=102.9
Q ss_pred H-HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 A-YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~-~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
| ++.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++....... .+.+ .
T Consensus 20 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~---~~~~-~ 87 (352)
T PF07690_consen 20 PLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR-----VLI---IGLLLFALGSLLLAFA---SNFW-L 87 (352)
T ss_dssp H-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH-----HHH---HHHHHHHHHHHHHHHH---CCHH-H
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee-----eEe---ehhhhhhhHHHHhhhh---hhHH-H
Confidence 6 556789999999999999999999999999999999999998 332 2222222221222111 2223 6
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+...++|..++|.+.+.+.+. .+|+.
T Consensus 88 ~~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~~~~~ 152 (352)
T PF07690_consen 88 LLIARFLLGIGSGFFSP-ASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISY-FGWRW 152 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-CHHCC
T ss_pred Hhhhccccccccccccc-cccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhc-ccccc
Confidence 78888899999888777 7899999999999999999999999999999999999988865 45555
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.1e-12 Score=113.55 Aligned_cols=136 Identities=18% Similarity=0.196 Sum_probs=96.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+ .|+++.+.+++.+...++..++.++.|+++||+|||+ .+. .+ .+...++.+.....+........+
T Consensus 51 p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~-----~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l 121 (438)
T TIGR00712 51 PYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV-----FLP--AG-LILSAAVMLLMGFVPWATSSIAIM 121 (438)
T ss_pred HHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce-----ehH--HH-HHHHHHHHHHHhccccccchHHHH
Confidence 55554 6999999999999999999999999999999999987 222 11 111112222222112111223445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ .....+.|.+|+++|++++|+.+...++++.+++.+.+...+...+|+.
T Consensus 122 ~~~~~l~g~~~g~~~~-~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~ 186 (438)
T TIGR00712 122 FVLLFLNGWFQGMGWP-PCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHA 186 (438)
T ss_pred HHHHHHHHHHhhcchH-HHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHH
Confidence 5666777888777666 6778888999999999999999999999999999888766554334443
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=109.32 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=100.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+.... .+ ..+.+
T Consensus 36 ~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----~~~---~~~~~~~~~~~~~~~---~~-~~~~l 103 (405)
T TIGR00891 36 AEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRL-----PMV---TSIVLFSAGTLACGF---AP-GYITM 103 (405)
T ss_pred HHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH---HHHHHHHHHHHHHHH---hc-cHHHH
Confidence 6777899999999999999999999999999999999999998 332 222222222222222 12 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+....+|..+++.+.+.+.+.
T Consensus 104 ~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 162 (405)
T TIGR00891 104 FIARLVIGIGMGGEYG-SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPV 162 (405)
T ss_pred HHHHHHHHhhhhhhhH-HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6778888988887777 7788999999999999999999999999999999999888765
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.4e-11 Score=115.53 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCC
Q 041066 72 MTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPT 151 (329)
Q Consensus 72 ~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (329)
..+..++.+++.+++|+++||+|||+ ++. ...+...++++++... .+. ..+.++.++.+++.+...+
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~-----~l~---~~~~lsai~~ll~~~~---~s~-~~ll~~~~l~g~~~~~~~~- 667 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLR-----MLA---GSMVLSCISCFFLSFG---NSE-SAMIALLCLFGGLSIAAWN- 667 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH-----HHH---HHHHHHHHHHHHHHHH---ccH-HHHHHHHHHHHHHHHHHHH-
Confidence 44567889999999999999999998 332 2222222222222221 111 2233334455555555455
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...++++|++|++.|++++|+.+....+|++++|.+++.+.+.
T Consensus 668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~ 710 (742)
T TIGR01299 668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI 710 (742)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999999999988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-12 Score=110.83 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=103.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+++.+.++..+...++..++.++.|+++||+|||+ ++. ...+...++.+..... ...+.+
T Consensus 44 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~-----~~~---~~~~~~~~~~~~~~~~----~~~~~l 111 (394)
T PRK10213 44 TPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY-----VVI---LFAVLLTLSCLLVSFA----NSFSLL 111 (394)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-----HHH---HHHHHHHHHHHHHHHH----ChHHHH
Confidence 5566889999999999999999999999999999999999998 332 2222222222222221 234567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.....+++..++|.+.+.+.+. .+|+.
T Consensus 112 ~~~r~l~G~~~g~~~~-~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~-~gw~~ 175 (394)
T PRK10213 112 LIGRACLGLALGGFWA-MSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGEL-IGWRN 175 (394)
T ss_pred HHHHHHHHHhhHHHHH-HHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCHHH
Confidence 7788888998887777 7888899999999999999999999999999999999998876 34443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=111.04 Aligned_cols=124 Identities=16% Similarity=0.206 Sum_probs=89.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+. |++..+.++..+...++..++.++.|+++||+|+|+ ++. ...+...+..+.+...+......+.+
T Consensus 53 p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~-----~l~---~~~~~~~i~~~~~~~~~~~~~~~~~~ 123 (452)
T PRK11273 53 PYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-----FLP---AGLILAAAVMLFMGFVPWATSSIAVM 123 (452)
T ss_pred HHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch-----hHH---HHHHHHHHHHHHHHhhhcccccHHHH
Confidence 666666 999999999999999999999999999999999998 332 22222222222222222112234456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
.+..++.|++.+...+ .....+.+.+|+++|++++|+.+...++|+.+.+++.
T Consensus 124 ~~~~~l~gi~~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 124 FVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHHHHHHHHHhccch-HHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6667788888877666 5677788999999999999999999999875544443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-11 Score=104.75 Aligned_cols=181 Identities=16% Similarity=0.130 Sum_probs=113.0
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-c----cCCcchhHH------HH------HH----HHHH-H
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-K----DQKPHKAFC------FV------IF----AYVV-R 59 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-~----~~~~~~~~~------f~------~~----~~~~-~ 59 (329)
+..|||+.|++.+++.++..++..+..||++...++..+ . ...+++.++ +. .+ +.+. +
T Consensus 157 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (394)
T PRK11652 157 TLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGA 236 (394)
T ss_pred hccChHHHHHHHHHHHHHHHHHHHHhCCccCccccchhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 357999999998887777666666666763221111111 0 112334333 00 00 4445 4
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
.+|+++.+.+++.....++.+++.++.+++.||++++. ........+.... ........ .. ..+......+
T Consensus 237 ~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~ 307 (394)
T PRK11652 237 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLL-MWIPGWFG-VM-NVWTLLVPAA 307 (394)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH-HHHHHHhc-cc-cHHHHHHHHH
Confidence 58999999999988888889999999999999988432 1111111111111 11111111 11 2233445556
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
+.+++.+...+ ...+...+..| +.+|++.++.+...++|+++++.+.+.+..
T Consensus 308 ~~~~g~~~~~~-~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 308 LFFFGAGMLFP-LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHH-HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 67777777677 67777888876 568999999999999999999998887654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-11 Score=107.39 Aligned_cols=130 Identities=19% Similarity=0.231 Sum_probs=93.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
++.+++|++..+.|++.+...++.+++.++.|+++||+|+|+ .+. ...+...++.+.+... ++ .+.+.
T Consensus 33 ~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~-----~~~---~~~~~~~~~~~~~~~~---~~-~~~~~ 100 (395)
T PRK10054 33 YLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKR-----YML---LAITAFASGFIAIPLV---NN-VTLVV 100 (395)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcch-----hHH---HHHHHHHHHHHHHHHH---hH-HHHHH
Confidence 344779999999999999999999999999999999999987 332 1222222222222221 22 23334
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
++..+.+.+.+...+ ...++..|..|+++|+++.|+.+...++|.+++|.+.+.+.+ .+|..
T Consensus 101 ~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~--~g~~~ 162 (395)
T PRK10054 101 LFFALINCAYSVFST-VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM--QSINL 162 (395)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hccCc
Confidence 444455555554455 678888999999999999999999999999999999998874 34544
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=109.11 Aligned_cols=133 Identities=13% Similarity=0.184 Sum_probs=93.4
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
|.|+ +.+|+++.+++.+.+.+.+...++.+++|+++||+ |||+ .+. ...+...++.+.+.. ..... .
T Consensus 33 ~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr-----~il---iG~il~~lg~lll~~-~~~~~--~ 101 (493)
T PRK15462 33 ILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM-----AVM---LGALLMAIGHVVLGA-SEIHP--S 101 (493)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH-----HHH---HHHHHHHHHHHHHHH-hhcch--h
Confidence 6665 67899999999999999999999999999999999 9988 322 222222222222211 11111 1
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCc--chhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPER--SRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
...+.+.+..++.+...+ ...+++.|.+|++ .|++++++.+...++|+.++|.+.+++.+. .+|..
T Consensus 102 ~~~l~l~li~iG~G~~~~-~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~-~Gw~~ 169 (493)
T PRK15462 102 FLYLSLAIIVCGYGLFKS-NVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE-YSWAM 169 (493)
T ss_pred HHHHHHHHHHHhcccccc-cHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh-hChHH
Confidence 122333344455555555 6788999999875 699999999999999999999999999876 34443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-11 Score=103.98 Aligned_cols=125 Identities=18% Similarity=0.181 Sum_probs=89.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.|.++.|.++...+.+.+...++.+++.++.|++.||+++|+ .+. .......++...+. . .. ..
T Consensus 224 p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~-----~l~---~~~~~~~~~~~~~~--~---~~--~~ 288 (381)
T PRK03633 224 PLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL-----VLR---VQVFVVILGSIAML--S---QA--AM 288 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH-----HHH---HHHHHHHHHHHHHh--h---hH--HH
Confidence 7777778999999999999999999999999999999999987 332 11111112111111 1 11 12
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
....++.|++.....| ...+.+.|..|+++++...+..+...++|+++||.+.|++.|..
T Consensus 289 ~~~~~l~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~ 348 (381)
T PRK03633 289 APALFILGAAGFTLYP-VAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY 348 (381)
T ss_pred HHHHHHHHHHHHhHHH-HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2344455555554456 66777788888877888888988899999999999999999873
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.9e-11 Score=99.93 Aligned_cols=176 Identities=10% Similarity=0.097 Sum_probs=110.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCCCC---cc----ccCCcchhHH------HHHH----------HHHHH
Q 041066 4 PGWRITFHLVGLISVIVGILVYLF-AKDTRCSDGKS---RA----KDQKPHKAFC------FVIF----------AYVVR 59 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~-~~~p~~~~~~~---~~----~~~~~~~~~~------f~~~----------~~~~~ 59 (329)
..||++|++.+.+.+++.+++.+. .||.+.+..+. ++ ++..+++.++ |.+. +.|++
T Consensus 89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~ 168 (310)
T TIGR01272 89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLS 168 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999998777756655544332 23311111110 00 0122334444 1111 55553
Q ss_pred ---HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHH
Q 041066 60 ---TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGL 136 (329)
Q Consensus 60 ---~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (329)
.+|+++.+.++..+.+..+.++|+++++++.||+++|+ ++. +...+.. +..++....+ ... ...
T Consensus 169 ~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~-----~l~--~~~~l~~-~~~~l~~~~~---~~~--~~~ 235 (310)
T TIGR01272 169 DPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR-----YLA--FNAFLAV-LLSIGAALTH---GYV--AMW 235 (310)
T ss_pred hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHH--HHHHHHH-HHHHHHHHcC---CHH--HHH
Confidence 26999999999999999999999999999999999887 332 2222222 2222222211 111 223
Q ss_pred HHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 137 VLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 137 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
.+++.|++.+...| ...+...+..|++ .+++.++. .+..+|++++|.+.|.+.|..
T Consensus 236 ~~~l~g~~~s~i~P-~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 236 FVLALGLFNSIMFP-TIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence 55577888888888 6777777776654 67777875 567799999999999999973
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=107.42 Aligned_cols=127 Identities=20% Similarity=0.264 Sum_probs=99.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+++.+.+++.+...++..++.++.|+++||+|||+ .+. ...+...+....+... + ..+.+
T Consensus 15 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~---~~~~~~~i~~~~~~~~---~-~~~~~ 82 (377)
T PRK11102 15 PVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP-----VIL---GGTLVFALAAVACALA---Q-TIDQL 82 (377)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH-----HHH---HHHHHHHHHHHHHHHH---c-cHHHH
Confidence 6777889999999999999999999999999999999999987 332 2222222222222221 1 23446
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 83 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 141 (377)
T PRK11102 83 IYMRFLHGLAAAAASV-VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW 141 (377)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888877666 6788999999999999999999999999999999999988876
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=114.75 Aligned_cols=133 Identities=17% Similarity=0.230 Sum_probs=105.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.+++.+.+.++.+++.++.|+++||+|||+ .+. ...+...++.+.... .+ ....+
T Consensus 26 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~---~~-~~~~l 93 (485)
T TIGR00711 26 PTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR-----LFL---ISTFAFTLGSLLCGV---AP-NLELM 93 (485)
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH-----HHH---HHHHHHHHHHHHHhC---cC-CHHHH
Confidence 7788899999999999999999999999999999999999998 332 222222222222222 22 34556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++......+|..++|.+.+++.+. .+|+..
T Consensus 94 ~~~~~~~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~-~~w~~~ 158 (485)
T TIGR00711 94 IIFRVIQGFGGGPLIP-LSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIEN-YHWRWI 158 (485)
T ss_pred HHHHHHHHhhhhhHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccC-cCceeh
Confidence 7788888988887777 7889999999999999999999999999999999999998876 456553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=107.99 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=102.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..+.+++.+.+.++..++.++.|+++||+|||+ ++. .......++.+..... ++ .+.+
T Consensus 33 p~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~-----~l~---~~~~l~~~~~~~~~~a---~~-~~~l 100 (393)
T PRK09705 33 PQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR-----SVA---ISLLLIAVGALMRELY---PQ-SALL 100 (393)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH-----HHH---HHHHHHHHHHHHHHHC---cc-hHHH
Confidence 7778899999999999999999999999999999999999998 332 3333333333333322 22 3456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ....++.+.+| ++|+.++++......+|..+++.+.+.+.+...+|+.
T Consensus 101 l~~r~l~Gig~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~ 164 (393)
T PRK09705 101 LSSALLGGVGIGIIQA-VMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQ 164 (393)
T ss_pred HHHHHHHHhHHHHHhh-hhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 7788899999888776 67788888876 6799999999999999999999999988776334433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=108.07 Aligned_cols=131 Identities=17% Similarity=0.092 Sum_probs=98.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh--cCCC--Cc
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV--LPDD--PS 129 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~ 129 (329)
|.+. +++|.|+.+.|++.+...++..++.++.|+++||+|||+ ++. ...+...++.+.... .... ..
T Consensus 39 ~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (399)
T PRK05122 39 PGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKK-----AVV---FGLCGCALSGLLYLLAGLLAAWPVL 110 (399)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcc-----hHH---HHHHHHHHHHHHHHHhhhhhccchh
Confidence 5544 789999999999999999999999999999999999998 333 221111111111111 1111 11
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
....+.+..++.|++.+...+ ...+++.+..|+++|+++.++.....++|..+++.+++.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~ 174 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGT-GSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW 174 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcc-hHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc
Confidence 234567777888998888777 6778888999999999999999998999999999999988875
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.6e-11 Score=106.07 Aligned_cols=125 Identities=13% Similarity=0.163 Sum_probs=89.6
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
+++. +.+|+++.++++.+.+..++.++++++++++.||+++|+ ++. ....+.. .........+ .. .
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~-----~l~--~~~~~~~-~~~~~~~~~~---~~--~ 349 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-----VLA--AYALIAM-ALCLISAFAG---GH--V 349 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHH--HHHHHHH-HHHHHHHHcC---Ch--H
Confidence 3434 468999999999999999999999999999999999987 332 1222221 1122222222 11 1
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
....+.+.|++.+...| ...+...+..|++ .+++.++.. +..+|++++|++.|.+.+..
T Consensus 350 ~~~~~~l~glg~~~i~P-~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~ 408 (438)
T PRK10133 350 GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhc
Confidence 23456678888888888 8888888887654 788888886 45578899999999998863
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=109.62 Aligned_cols=174 Identities=24% Similarity=0.420 Sum_probs=113.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCC-Cccc-----cC----C----cchhHH------HH---HH---
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKD-TRCSDGK-SRAK-----DQ----K----PHKAFC------FV---IF--- 54 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~-~~~~-----~~----~----~~~~~~------f~---~~--- 54 (329)
+.+|||+.|++.+++.++..++..++.++ +..+... ..++ +. . +++.+| +. .+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (352)
T PF07690_consen 146 SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGF 225 (352)
T ss_dssp CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHHHHHHHh
Confidence 35789999999998888877754444443 2221111 1111 00 1 112121 00 00
Q ss_pred ----HHH-HHHhCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 55 ----AYV-VRTIGFS-HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 55 ----~~~-~~~~g~s-~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
|.| .+.+|++ ..+.+.+.....+..+++.++.|+++||+++++ ... .......+..+.+.......
T Consensus 226 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~ 297 (352)
T PF07690_consen 226 SFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRR-----RLL---IAILLLILGALGLLLLPFSS 297 (352)
T ss_dssp HHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH-----HHH---HHHHHHHHHHHHHCCSHHHC
T ss_pred hcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHH---HHHHHHHHHHHHHHHHHHhh
Confidence 665 4789999 899999999999999999999999999999866 222 11122222222222111111
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHH
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAP 185 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 185 (329)
.........++.|++.+...+ ...+++.+..|++++|++.|+.+...++++.++|
T Consensus 298 -~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 298 -SPVWLIIALFLIGFGFGIVFP-ILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -HHHHHHHHHHHHHHHHHHHCH-HHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 233445566778888887777 7899999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=111.26 Aligned_cols=132 Identities=16% Similarity=0.212 Sum_probs=98.9
Q ss_pred HHHH-HH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 041066 55 AYVV-RT--IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPST 130 (329)
Q Consensus 55 ~~~~-~~--~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
|.|+ +. +|++..+++.+.+.+.++..++.+++|+++|| +|||+ .+. ...+...++.+.+... + .
T Consensus 34 ~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~-----~l~---~~~~~~~~g~~~~~~~---~-~ 101 (475)
T TIGR00924 34 AVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK-----TMV---LGGIVLMLGHFMLAMS---I-Y 101 (475)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH-----HHH---HHHHHHHHHHHHHHhc---c-c
Confidence 6665 44 89999999999999999999999999999999 89998 332 2222222333333221 1 1
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcc---hhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERS---RTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+.+.+++.|++.+...+ ...+++++.+|+++ |+.++++.+...++|+++||.+.+.+.+. .+|..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~-~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~-~g~~~ 172 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKA-NPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAEN-YGYHV 172 (475)
T ss_pred HhHHHHHHHHHHhccccccC-CHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHh-cChHH
Confidence 23455566778888887777 77889999988654 88899999999999999999999999876 34443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.2e-11 Score=114.25 Aligned_cols=127 Identities=16% Similarity=0.131 Sum_probs=100.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+.+|++..+.+++.+...++.+++.+++|+++||+|||+ .++ ++.++ ..++.++.... + ..+.+
T Consensus 191 p~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~-----~li--i~lil-~~i~~ll~afa---~-s~~~l 258 (742)
T TIGR01299 191 PSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQ-----CLL--ICLSV-NGFFAFFSSFV---Q-GYGFF 258 (742)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH--HHHHH-HHHHHHHHHHH---h-hHHHH
Confidence 6677789999999999999999999999999999999999998 332 12122 21222222221 1 24557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.++.++.|++.+...+ ...+++.|.+|++.||..+++.+++..+|.++++.++..+...
T Consensus 259 lv~R~l~G~g~g~~~p-~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~ 317 (742)
T TIGR01299 259 LFCRLLSGFGIGGAIP-IVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPH 317 (742)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788889999888777 8899999999999999999999999999999999988777654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-10 Score=102.32 Aligned_cols=127 Identities=16% Similarity=0.045 Sum_probs=88.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.|.++.|++..+.|.+.+...++.++..++.|++.||+++|+ .+. ...+...+..+.+.. .+ ..+.+
T Consensus 229 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~l~---~~~~~~~~~~~~~~~---~~-~~~~~ 296 (382)
T PRK11128 229 AIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD-----LLL---LSAICGVVRWGLMGS---TT-ALPWL 296 (382)
T ss_pred HHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----HHH---HHHHHHHHHHHHHHh---hh-hHHHH
Confidence 5555678999999999999888899999999999999999987 322 222222222222211 22 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHH-HHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSF-ESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~g~l~~~~ 195 (329)
.+..++.|++.+...+ ....+..+. +++++++..++.+.. ..+|..+||.+.|.+.|..
T Consensus 297 ~~~~~l~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~ 356 (382)
T PRK11128 297 IVIQILHCGTFTVCHL-AAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL 356 (382)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566777777776555 566667776 555578889988744 4566799999999999984
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-11 Score=108.94 Aligned_cols=127 Identities=14% Similarity=0.107 Sum_probs=98.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+++.+.+++.+...++..++.++.|+++||+|||+ .+. .. .+...+..+..... . +.+.+
T Consensus 39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~--~~-~~~~~~~~~~~~~~---~-~~~~~ 106 (406)
T PRK11551 39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKR-----ILI--VS-VALFGLFSLATAQA---W-DFPSL 106 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-----hHH--HH-HHHHHHHHHHHHHh---c-cHHHH
Confidence 7777889999999999999999999999999999999999998 333 11 11122222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|++++++.+....+|+.+++.+.+.+.+.
T Consensus 107 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 165 (406)
T PRK11551 107 LVARLLTGVGLGGALP-NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGD 165 (406)
T ss_pred HHHHHHHHhhHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 6777888888877666 6788999999999999999999999999999999887766553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.4e-11 Score=104.95 Aligned_cols=133 Identities=9% Similarity=0.133 Sum_probs=100.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..+.+++.+...++..++.++.|++.||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 31 ~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~-----~~~---~~~~~~~i~~~l~~~~---~-~~~~~ 98 (394)
T PRK03699 31 GPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR-----QLI---FGFALMILAVAGLMFS---H-SLALF 98 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-----HHH---HHHHHHHHHHHHHHHc---c-hHHHH
Confidence 6677889999999999999999999999999999999999998 332 2222222222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.+.+|+++|+.+.+..+....+++.++|.+.+.+.+...+|+.
T Consensus 99 ~~~~~l~G~~~g~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 99 SIAMFVLGVVSGITMS-IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHHhhHhhcc-chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 6777888888887676 6788899999998999999999888889999999998887764344444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-11 Score=104.89 Aligned_cols=184 Identities=12% Similarity=0.169 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-C-----Cccc-------cCCcchhHH-H---H--------HH---
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDG-K-----SRAK-------DQKPHKAFC-F---V--------IF--- 54 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~-~-----~~~~-------~~~~~~~~~-f---~--------~~--- 54 (329)
.+|||++|++.+++.++..++.++..++++.++. + ...+ +..++|.++ + . .+
T Consensus 158 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (396)
T TIGR00882 158 SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQ 237 (396)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999888877777666555555322110 0 0000 112344444 0 0 00
Q ss_pred -HHHHHH-h---CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 -AYVVRT-I---GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 -~~~~~~-~---g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
+.|.+. + +.+....|.+.+...+...++.+..|++.||+|+|+ ... ++ .+...+....+.. ..+
T Consensus 238 ~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~-----~l~--~~-~~l~~l~~~~~~~---~~~ 306 (396)
T TIGR00882 238 FANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKN-----ALL--IA-GTIMSVRIIGSSF---ATT 306 (396)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----hHH--HH-HHHHHHHHHHHHh---cCC
Confidence 444433 2 456667788888888899999999999999999998 322 11 2222222222221 122
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHH-HHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYAL-DRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+.+..++.|++...... ....+..+..+++.++++.+. .+....+|+++++.+.|++.+.. +|..
T Consensus 307 -~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~ 375 (396)
T TIGR00882 307 -ALEVVILKMLHAFEVPFLLV-GCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQG 375 (396)
T ss_pred -hHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHH
Confidence 22234445556665544332 344556666788888887776 67889999999999999999973 4443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=112.24 Aligned_cols=131 Identities=13% Similarity=0.011 Sum_probs=99.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHH-HHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVI-PIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+.+++|++..+.|++.+.+.++..++.++.|+++||+|+|+ ++.. +..+.. ............. .....
T Consensus 53 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-----~l~~--~~~~~~~~~~~~~~~~~~~~-~~~~~ 124 (467)
T PRK09556 53 NDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQ-----FLPF--LLILSAICMLGFGASLGSGS-VSLGL 124 (467)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccc-----hHHH--HHHHHHHHHHHHHHHHhccc-chHHH
Confidence 7777899999999999999999999999999999999999998 3321 111111 1111111111112 23556
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+.+..++.|++.+...+ ...+++.+.+|+++||.++|+.....++|.++++.+..++...
T Consensus 125 l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~ 184 (467)
T PRK09556 125 MIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY 184 (467)
T ss_pred HHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence 77788888998888777 7888999999999999999999999999999999887766654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=107.44 Aligned_cols=127 Identities=14% Similarity=0.200 Sum_probs=97.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+ .+. ...+...++....... + ..+.+
T Consensus 27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~-----~l~---~~~~~~~i~~~~~~~~---~-~~~~~ 94 (392)
T PRK10473 27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP-----VAI---PGAALFIIASLLCSLA---E-TSSLF 94 (392)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH-----HHH---HHHHHHHHHHHHHHHh---C-cHHHH
Confidence 7778889999999999999999999999999999999999987 332 2222222222222221 2 23345
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+...+++..++|.+.+.+.+.
T Consensus 95 ~~~~~l~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 95 LAGRFLQGIGAGCCYV-VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5566777877776565 6788999999999999999999999999999999998877665
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=111.97 Aligned_cols=132 Identities=17% Similarity=0.202 Sum_probs=101.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.+++.+.+.++..++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 30 p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~-----~l~---~~~~~~~~~~~~~~~a---~-~~~~l 97 (495)
T PRK14995 30 PTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR-----LLM---LGGTLFGLASLAAAFS---P-TASWL 97 (495)
T ss_pred HHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH---HHHHHHHHHHHHHHHc---C-CHHHH
Confidence 8888999999999999999999999999999999999999998 333 2222222222222221 2 34557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhc-CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIV-PERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ .....+.+.+ |+++|+++.|+......+|..+||.+++.+.+. .+|++
T Consensus 98 i~~r~l~G~g~~~~~~-~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~-~gwr~ 162 (495)
T PRK14995 98 IATRALLAIGAAMIVP-ATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEH-FYWGS 162 (495)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChHH
Confidence 7778888988887666 5555565654 678899999999999999999999999999887 45554
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=110.45 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=100.5
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
+++++..+.|++.+.+.++..++.+++|+++||+|+|+ .+. .+.++..+...+..... .. ....+.+..+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----~l~--~~~~~~~~~~~~~~~~~--~~-~~~~l~~~r~ 139 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKW-----SIG--IGMFLSSVISIVIPWAA--GG-GIALVVFCRV 139 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcch-----hhH--HHHHHHHHHHHHHHHHH--Hc-CchHHHHHHH
Confidence 68999999999999999999999999999999999998 322 11111111111111111 11 2344777888
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
+.|++.+...+ ....++.+.+|+++|++++|+.+...++|.++++.+.+.+.+...+|...
T Consensus 140 ~~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~ 200 (465)
T TIGR00894 140 IQGLAQGSVSP-ATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMI 200 (465)
T ss_pred HHHHhcccchh-hHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCee
Confidence 89999998888 78899999999999999999999999999999999999988763366654
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=5.2e-11 Score=105.64 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=96.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
++.+++|+|..+.|+..+...+...+..++.|+++||+|+|+ .+. ...+...+..+.+... + ..+.+.
T Consensus 36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~-----~l~---~~~~~~~~~~~~~~~~---~-~~~~l~ 103 (400)
T PRK11646 36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP-----MIV---TGMLMRAAGFATMAIA---H-EPWLLW 103 (400)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH-----HHH---HHHHHHHHHHHHHHHh---c-cHHHHH
Confidence 345789999999999999999999999999999999999987 332 2222222222222221 2 244466
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
+..++.|++.+...+ ...+++.+.+|+++|+++.|+.+...++|..+||.+.+.+.+
T Consensus 104 ~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~ 160 (400)
T PRK11646 104 LSCILSGLGGTLFDP-PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQ 160 (400)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778887776666 678888999999999999999999999999999999999873
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.4e-11 Score=107.23 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=99.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.++..+.+.++..++.++.|+++||+|||+ ++. ...+...++.+.... .+ ....+
T Consensus 40 ~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~-----~l~---~~~~~~~~~~~~~~~---a~-~~~~l 107 (413)
T PRK15403 40 INVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRP-----VLI---TGALIFTLACAATLF---TT-SMTQF 107 (413)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchH-----HHH---HHHHHHHHHHHHHHH---cC-CHHHH
Confidence 5666889999999999999999999999999999999999998 333 222222222222222 12 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ....++.|.+|+++++++.++.+....++..++|.+++.+.+. .+|+.
T Consensus 108 ~~~r~l~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~-~gw~~ 171 (413)
T PRK15403 108 LIARFIQGTSICFIAT-VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHF-VHWKV 171 (413)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHH
Confidence 7778888887765444 5567888999999999999999999999999999999888765 34444
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.1e-11 Score=110.69 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=102.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+ ... ...+....+.+..... + ..+.+
T Consensus 34 p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~l 101 (471)
T PRK10504 34 PSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRN-----IFF---TAIVLFTLGSLFCALS---G-TLNEL 101 (471)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH-----HHH---HHHHHHHHHHHHHHHh---C-CHHHH
Confidence 7888889999999999999999999999999999999999998 332 1112222222222221 2 23446
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.|+.+...++|..++|.+.|.+.+. .+|+.
T Consensus 102 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~-~gw~~ 165 (471)
T PRK10504 102 LLARVLQGVGGAMMVP-VGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY-ASWHW 165 (471)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh-ccHHH
Confidence 6778888998888777 7788899999999999999999999999999999999999886 34433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=106.05 Aligned_cols=131 Identities=15% Similarity=0.086 Sum_probs=97.7
Q ss_pred HHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHH---HhcCC-CCc
Q 041066 55 AYV-VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLL---LVLPD-DPS 129 (329)
Q Consensus 55 ~~~-~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~ 129 (329)
|.+ .+++|+|..+.|++.+...++..+++++.|+++||+|||+ .+. .+..... ++.+.+ ...+. ...
T Consensus 39 ~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~-----~l~--~~~~~~~-~~~~~~~~~~~~~~~~~~ 110 (392)
T PRK12382 39 PLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKR-----SAL--QGMLACG-LAGLAYLLAAILPVSAPF 110 (392)
T ss_pred hHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchH-----HHH--HHHHHHH-HHHHHHHhhhccccchhH
Confidence 444 4789999999999999999999999999999999999998 333 1111111 111111 11111 112
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+.+.+..++.|++.+...+ ...+++.+..|+++|++++|+.....+++..++|.+.+.+.+.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 111 KFALLVVGRLILGFGESQLLT-GALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567777888888877666 5677888999999999999999999999999999999888765
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.4e-11 Score=105.01 Aligned_cols=132 Identities=15% Similarity=0.159 Sum_probs=98.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+ ++. .......++.+..... + ..+.+
T Consensus 37 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~---~-~~~~l 104 (406)
T PRK15402 37 LAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP-----VML---AGVAFFILTCLAILLA---Q-SIEQF 104 (406)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-----HHH---HHHHHHHHHHHHHHHH---c-cHHHH
Confidence 5667899999999999999999999999999999999999998 332 2222222222222221 2 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+.+.|.+|++.|+.+.++......++..++|.+.+.+.+. .+|+.
T Consensus 105 ~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~~w~~ 168 (406)
T PRK15402 105 TLLRFLQGIGLCFIGA-VGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHV-LPWRG 168 (406)
T ss_pred HHHHHHHHhHhhhHHH-HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCccH
Confidence 6667777877776556 6788889999999999999999888888999999999988775 45544
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.7e-11 Score=106.83 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=97.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
.|+.+.+|++..+++++...+.....+..+++|+++|| +|||+ .+. ...+...++.+...... . ....
T Consensus 39 ~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~-----~~~---~g~~~~~~g~~~~~~~~-~--~~~l 107 (489)
T PRK10207 39 VFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKR-----TIV---LGAIVLAIGYFMTGMSL-L--KPDL 107 (489)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHH-----HHH---HHHHHHHHHHHHHHHhc-c--chhH
Confidence 34447899999999999888888888888999999999 99998 333 22222222222222221 1 1222
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCc--chhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPER--SRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.+.+++.+++.+...| ...+++.|.+|++ +|+.++++.++..++|.++||.+.|++.++. +|..
T Consensus 108 l~~~~~l~~ig~g~~~~-~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~ 174 (489)
T PRK10207 108 IFIALGTIAVGNGLFKA-NPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSV 174 (489)
T ss_pred HHHHHHHHHhccccccC-CHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHH
Confidence 44567778888888887 7789999999877 4578999999999999999999999998873 4544
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.3e-11 Score=106.35 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=100.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 27 ~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~l~~~~---~-~~~~l 94 (382)
T PRK10091 27 TELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKH-----ILL---FLVALCVIGNAMFTLS---S-SYLML 94 (382)
T ss_pred HHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHH-----HHH---HHHHHHHHHHHHHHHh---C-cHHHH
Confidence 7778899999999999999999999999999999999999998 332 2222222222222221 2 24556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ .....+.+..++++|+.+.++......++..+++++.+.+.+. .+|+.
T Consensus 95 ~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~-~gwr~ 158 (382)
T PRK10091 95 AIGRLVSGFPHGAFFG-VGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQE-FSWRY 158 (382)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhh-ccHHH
Confidence 6778888888777666 5677888999988899999999999999999999999888765 34433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.7e-11 Score=105.10 Aligned_cols=131 Identities=13% Similarity=0.038 Sum_probs=94.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.+.+++|+++.+.++..+.+.++..++.++.|+++||+|||+ .+. ........+.+.+.........++.+
T Consensus 37 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~-----~l~---~~~~~~~~~~~~~~~~~~~~~~~~~l 108 (402)
T TIGR00897 37 SPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLK-----TMM---IGLLLWCVGHAAFIVFGLGHANYPLI 108 (402)
T ss_pred HHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHH-----HHH---HHHHHHHHHHHHHHHHhccCccHHHH
Confidence 5566789999999999999999999999999999999999998 333 12221112222111111111124445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh-hhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA-SFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+.+.+.+|+++|++++|+.+...++|. .++|.+.+.+.+.
T Consensus 109 ~~~~~i~G~g~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~ 168 (402)
T TIGR00897 109 LLFYGIRGLGYPLFAY-SFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA 168 (402)
T ss_pred HHHHHHHHcchHHHHh-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5666777777766555 556677888899999999999999999986 5788888887765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-10 Score=101.71 Aligned_cols=183 Identities=10% Similarity=0.027 Sum_probs=105.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-cc-------ccCCcchhHH---------------HHHH-HHHH
Q 041066 3 IPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS-RA-------KDQKPHKAFC---------------FVIF-AYVV 58 (329)
Q Consensus 3 ~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~-~~-------~~~~~~~~~~---------------f~~~-~~~~ 58 (329)
++|||+.|++.+++.++..+..++.+||+...+++. .. +...++|.+| |..+ |++.
T Consensus 166 ~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l 245 (413)
T PRK15403 166 FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVIL 245 (413)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 479999999999887777666666677632211111 10 0112445555 0001 7666
Q ss_pred -HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 59 -RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 59 -~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
+.+|+++.+.++...+...+.+++..+.+++.+|..+++. +........++..+........ .. .++...+.
T Consensus 246 ~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~----~~~~~~~~~ig~~l~~~~~~~~--~~-~~~~~~~~ 318 (413)
T PRK15403 246 IDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF----IWRAVPIQLVGLALLIVGNLLW--PH-VWLWSVLG 318 (413)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH----HHHHHHHHHHHHHHHHHHHHHc--cc-cHHHHHHH
Confidence 5679999999999888888888888888776654433331 1111111111111111111111 11 22223455
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.++.+++.+...| ....... .-....+|++.|+.++....+..+++...+++.+.
T Consensus 319 ~~l~~~G~~~~~p-~~~~~al-~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~ 373 (413)
T PRK15403 319 TSLYAFGIGLIFP-TLFRFTL-FSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHHHhH-HHHHHHh-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5666677666555 3332222 11233489999999999999999999998887665
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.9e-11 Score=101.22 Aligned_cols=182 Identities=16% Similarity=0.297 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-------------ccCCcchhHH-H----HHH-----------HH
Q 041066 6 WRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-------------KDQKPHKAFC-F----VIF-----------AY 56 (329)
Q Consensus 6 Wr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-------------~~~~~~~~~~-f----~~~-----------~~ 56 (329)
=|..+.+.++..++..+..++.++++.+...+..+ ++..+.+++. | .++ ..
T Consensus 198 ~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~ 277 (438)
T COG2270 198 VRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRNGFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGV 277 (438)
T ss_pred chhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence 47788888888888999999998885432211100 0001112222 1 111 34
Q ss_pred HH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 57 VV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 57 ~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
|. ..+|++..+..++.....+..++|+++.|++.||+|.|+ ++. .+. +...+.++...... .+ ..+.
T Consensus 278 fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~-----vl~--~~l-vi~~~~~~~~~~~~-~~---~~f~ 345 (438)
T COG2270 278 FGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKP-----VLM--IGL-VILSIAALYLIFLE-GE---LDFW 345 (438)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-----eeh--HHH-HHHHHHHHHHHHcc-cc---HHHH
Confidence 44 589999999999999999999999999999999999997 332 122 22222222222222 12 2244
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
++..+.|.+.|.... ..-++..+.+|+++.+..+|+++..+...+.+||.+.+.+.+.++..+.
T Consensus 346 i~gll~g~s~G~~qA-~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~ 409 (438)
T COG2270 346 ILGLLVGTSLGGAQA-SSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA 409 (438)
T ss_pred HHHHHHHHhcchHHH-HHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh
Confidence 455666777776666 7899999999999999999999999999999999999999988654333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=107.31 Aligned_cols=132 Identities=17% Similarity=0.069 Sum_probs=96.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.++++.++.+.|++.+...++.+++.++.|+++||+|||+.. ........+........ ... ..+ ..+.+
T Consensus 41 ~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l----~~~~~~~~~~~~~~~~~-~~~-~~~-~~~~l 113 (417)
T PRK10489 41 PVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI----LLARGTCGLGFIGLALN-AFL-PEP-SLLAI 113 (417)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE----EehHHHHHHHHHHHHHH-HHc-CCC-cHHHH
Confidence 777788888999999999999999999999999999999999832 11111111111111110 111 122 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.+.+|+++++++.++.+...++|..+||.+.+.+.+.
T Consensus 114 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~ 172 (417)
T PRK10489 114 YLLGLWDGFFGSLGVT-ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA 172 (417)
T ss_pred HHHHHHHHHHHHHHHH-HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 5666777777766556 6677888999999999999999999999999999999998876
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=100.63 Aligned_cols=127 Identities=20% Similarity=0.325 Sum_probs=101.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~ 90 (352)
T cd06174 23 PLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRR-----VLL---LGLLLFALGSLLLAFA---S-SLWLL 90 (352)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCch-----hhH---HHHHHHHHHHHHHHHh---c-cHHHH
Confidence 6777888999999999999999999999999999999999998 222 2222222222222221 2 34556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+.
T Consensus 91 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 149 (352)
T cd06174 91 LVGRFLLGLGGGALYP-AAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAES 149 (352)
T ss_pred HHHHHHHHcccccccH-hHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888777 7899999999999999999999999999999999999998876
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-10 Score=106.28 Aligned_cols=107 Identities=19% Similarity=0.137 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCC
Q 041066 72 MTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPT 151 (329)
Q Consensus 72 ~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 151 (329)
....++..+++.++.++++||+|||+ .+. ...+...++.+.+...+... .+......++.+++.+...+
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~-----~~~---~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 429 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRY-----TMA---ASLLLAGVALLLLLFVPVDL--YFLRTALAVLGKFGITSAFQ- 429 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH-----HHH---HHHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHHHHHHHH-
Confidence 34456778889999999999999987 322 22222222222222222221 12233333444444444445
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHH
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVG 189 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g 189 (329)
..+.+..|.+|++.|+++.|+.++...+|++++|.+.+
T Consensus 430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 66888999999999999999999999999999999988
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-10 Score=102.78 Aligned_cols=133 Identities=15% Similarity=0.181 Sum_probs=92.3
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
+.|+ +++|++..+++.+............+++|+++|| +|||+ .+. ...+...++...+.... ....
T Consensus 45 ~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~-----~~~---~g~~~~~ig~~l~~~~~---~~~~ 113 (500)
T PRK09584 45 AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR-----VIM---LGAIVLAIGYALVAWSG---HDAG 113 (500)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH-----HHH---HHHHHHHHHHHHHHHhc---ccHH
Confidence 4444 7899999998888877666666666789999999 59997 332 22222222222222211 1223
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERS--RTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+.+..++.|++.+...+ ...+++.+.+|++. ++.+.++.++..++|++++|.+.|++.+. .+|+.
T Consensus 114 ~l~~~~~l~gig~g~~~~-~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~-~g~~~ 181 (500)
T PRK09584 114 IVYMGMATIAVGNGLFKA-NPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAK-YGWSV 181 (500)
T ss_pred HHHHHHHHHHHhhhcccC-CHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHh-hCHHH
Confidence 345566777888887777 77789999987643 45678899999999999999999999886 34444
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-11 Score=105.02 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=99.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|+.+.++..+...++..++.++.|+++||+|||+ .+. ...+...++.+..... . ..+.+
T Consensus 42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~---~-~~~~l 109 (426)
T PRK12307 42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP-----LMM---WSIVAYSVGTGLSGLA---S-GVIML 109 (426)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-----HHH---HHHHHHHHHHHHHHHH---h-HHHHH
Confidence 6666899999999999999999999999999999999999998 332 2222222222222221 1 34557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ....++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 110 ~~~r~l~G~g~g~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~ 168 (426)
T PRK12307 110 TLSRFIVGMGMAGEYA-CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEA 168 (426)
T ss_pred HHHHHHHHHHHhhHHH-HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHccc
Confidence 7788888988887777 7788899999999999999999999999999999888877665
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=102.05 Aligned_cols=179 Identities=12% Similarity=0.162 Sum_probs=109.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCC-CCCCCCcc----ccCCcchhHH------HH----H------HHHHH---H
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTR-CSDGKSRA----KDQKPHKAFC------FV----I------FAYVV---R 59 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~-~~~~~~~~----~~~~~~~~~~------f~----~------~~~~~---~ 59 (329)
.|||.+|++.+++.++..++..+.+++++ .++.+.+. ++..++|+++ +. . ++.+. .
T Consensus 158 ~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 158 QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATETGSVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVA 237 (395)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 58999999988776666555555554421 11111100 1223445554 10 0 03222 2
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
..+.+....+.+.....+......+..|++.||.++|+ .+. .......+....+... .+..+.+.+..+
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~l~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 306 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP-----LMT---AGTLCFVIGLVGFIFS---GNSLLLWGMSAA 306 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh-----HHH---HHHHHHHHHHHHHHHc---chHHHHHHHHHH
Confidence 34556666777777777777777788899999998887 222 1111122222222211 112333445566
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+.+++.+...| ...+.+.+..|++.++++++..+ ..++|.++||.++|.+.|..
T Consensus 307 ~~~~g~~~~~p-~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~ 360 (395)
T PRK10054 307 VFTVGEIIYAP-GEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL 360 (395)
T ss_pred HHHHHHHHHHh-hHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 77777776666 67788899999999999998765 66789999999999999984
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-10 Score=105.16 Aligned_cols=125 Identities=6% Similarity=-0.044 Sum_probs=91.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++..++.++.|+++||+|+|+ .+. ...+...+..+..... . +...+
T Consensus 60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~-----~~~---~~~~~~~~~~~~~~~~---~-s~~~l 127 (476)
T PLN00028 60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRY-----GSA---FLLMLTAPAVFCMSLV---S-SATGF 127 (476)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-----HHH---HHHHHHHHHHHHHHHh---c-CHHHH
Confidence 5677899999999999988889999999999999999999997 332 2222222222222221 2 23345
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+..++.|++.+...+ ...++.+.+|+++||.++|+.+...++|+.+++.+.+.+..
T Consensus 128 ~~~r~l~G~~~~~~~~--~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~ 184 (476)
T PLN00028 128 IAVRFFIGFSLATFVS--CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFP 184 (476)
T ss_pred HHHHHHHHHHHHhhHH--HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777877765333 45678899999999999999999999999888888766654
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1e-10 Score=97.69 Aligned_cols=102 Identities=19% Similarity=0.126 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCc
Q 041066 74 LFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTN 153 (329)
Q Consensus 74 ~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (329)
+..+..+.|.++.++++||+|||+ .+....+...+..+.+........ ..+..+..-++....+. ..
T Consensus 389 itslaefPGlLIt~~iverlGRKk--------TMal~l~~f~iflfll~~c~~rn~----~tvllf~arafisg~fq-va 455 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVERLGRKK--------TMALSLILFGIFLFLLTTCKTRNA----YTVLLFTARAFISGAFQ-VA 455 (528)
T ss_pred HHHHhhCCchhHHHHHHHHhcchh--------HHHHHHHHHHHHHHHHHHhcCcch----hHHHHHHHHHHHhchhe-EE
Confidence 456788899999999999999998 222332222222222222222222 22333333344444455 67
Q ss_pred hhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 154 NPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 154 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
+.+..|++|...|+++.|....+..+|+++.|.+.
T Consensus 456 YvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 456 YVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred EEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 89999999999999999999999999999999997
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=115.21 Aligned_cols=133 Identities=9% Similarity=0.126 Sum_probs=94.1
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC--------
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLP-------- 125 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 125 (329)
|.|. +.+|.++...|++.+...++.++|.++.|+++++..+++. +....+...+. ...+.+....
T Consensus 249 p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~----~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~ 322 (1140)
T PRK06814 249 PLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY----VPIGALLMGLF--GLDLAFASSSVPAEPAQL 322 (1140)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee----ehHHHHHHHHH--HHHHHhcccccccccccc
Confidence 6665 6689999999999999999999999999999987766552 11111111111 1111110000
Q ss_pred ------CCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 126 ------DDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 126 ------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
......+.+.+..+++|++.+...+ ...+++++..|++.+|+++|+.+++.+++..+++.+.+.+.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 323 KSILVFLSKRHGWRILIDLFGLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred cchhhhhcccccHHHHHHHHHHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001234455667777888887776 6889999999999999999999999999999999999888754
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=99.44 Aligned_cols=128 Identities=14% Similarity=0.145 Sum_probs=91.2
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc-CCCCchhH
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL-PDDPSTGF 132 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 132 (329)
+.+.+ ++|+|..+.+++.++..++..++++..|++.||+|.|+ +.. ++..+. .+..+..... .+..+++.
T Consensus 58 ~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~-----v~~--~~~ll~-~i~~~~~~~a~~~~~~s~~ 129 (462)
T PRK15034 58 VNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRR-----WTV--FSTAIL-IIPCVWLGIAVQNPNTPFG 129 (462)
T ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH-----HHH--HHHHHH-HHHHHHHHHHHcccCCCHH
Confidence 34444 79999999999999999999999999999999999997 332 222221 1222222211 11123456
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.+.+..++.|++ +...+ .....+++.+|+++||++.|+....+++|..+++.+.+.+.
T Consensus 130 ~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 130 IFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 677888888887 44455 67888999999999999999998888888877766665544
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-10 Score=102.74 Aligned_cols=130 Identities=14% Similarity=0.068 Sum_probs=101.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.|++.++..++..+++++.|++.||+|+|+ .+. ...+...++.+.+......+ .++.+
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~-----~~~---~g~~l~~~g~~l~~~~~~~~-~~~~~ 97 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA-----GIL---LGLFLYALGAFLFWPAAEIM-NYTLF 97 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHH---HHHHHHHHHHHHHHHHHhhc-cHHHH
Confidence 7778899999999999999999999999999999999999998 332 22222222222222111122 34556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.+..|++++++..++.+...++|..++|.+.+.+...
T Consensus 98 l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~ 156 (410)
T TIGR00885 98 LVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILS 156 (410)
T ss_pred HHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7778888998888777 6788888888989999999999999999999999999888654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=102.72 Aligned_cols=132 Identities=14% Similarity=0.214 Sum_probs=97.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+..... + ..+.+
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~l 97 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKP-----VLL---AGLSLFALGSLGMLWV---E-SAAQL 97 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcH-----HHH---HHHHHHHHHHHHHHHh---c-CHHHH
Confidence 4456889999999999999999999999999999999999998 332 2222222222222221 2 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ...+++.|.+|+++++...+..+....++..++|.+.+.+.+. .+|+.
T Consensus 98 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~ 161 (401)
T PRK11043 98 LVLRFVQAVGVCSAAV-IWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH-FGWQA 161 (401)
T ss_pred HHHHHHHHhhhHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CChHH
Confidence 5666777777665555 5677888999998889999999988999999999999988876 34433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-10 Score=101.11 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=75.8
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.|. +.+|+++.+++.+.....+..+++.+++|+++||+|+|+ .... .... ...+...+............
T Consensus 249 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~-----~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (366)
T TIGR00886 249 AMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGAR-----KLLM--SFLG-VAMGAFLVVLGLVSPLSLAV 320 (366)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccch-----hHHH--HHHH-HHHHHHHHHhcCCCcchHHH
Confidence 6555 578999999999999999999999999999999999986 3221 1111 11111112111111112333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA 181 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 181 (329)
.....++.+++.+...+ ..++++.+..| +++|+++|+.+..+++|+
T Consensus 321 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 321 FIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 33444444555555444 56777888876 579999999999888763
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.2e-10 Score=99.38 Aligned_cols=127 Identities=13% Similarity=0.134 Sum_probs=94.1
Q ss_pred HH-HHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AY-VVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~-~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|. +.+++|+|+.+.+++.+...++.+++.++.|+++||+|||+ .+. ...+...++.+....... ..+.
T Consensus 25 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~i~~~~~~~~~~---~~~~ 93 (366)
T TIGR00886 25 VQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY-----TTT---LSLLLLAIPCLWAGLAVQ---SYSV 93 (366)
T ss_pred hHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH-----HHH---HHHHHHHHHHHHHHHHhh---hHHH
Confidence 64 56899999999999999999999999999999999999998 332 222222222222222110 2444
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+.+..++.|++.+. .+ ....++.+.+|+++|+.+.++.....++|..+++.+.+.+...
T Consensus 94 ~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 94 LLLLRLFIGIAGGS-FA-SCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred HHHHHHHHHHhchh-hH-hHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56667777877554 34 4678899999999999999999988899988888888776653
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.5e-11 Score=103.72 Aligned_cols=124 Identities=16% Similarity=0.205 Sum_probs=96.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.+.++++.++.+.+++.+.+.+...+..++.|+++||+|||+ ++. .+..+ ..++.+.+... .. .
T Consensus 27 ~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~-----vl~--~~~~~-~~~~~~~~~~~---~~----~ 91 (393)
T PRK11195 27 IALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGR-----VMF--IANGI-KLLGCLLMLFG---IH----P 91 (393)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCch-----hhH--HHHHH-HHHHHHHHHHH---HH----H
Confidence 4456788999999999999999999999999999999999998 333 11111 11111111111 11 1
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...| ...+++.|.+|+++|+++.|+.+...+++..+||.++|.+.+.
T Consensus 92 ~~~r~l~G~~~a~~~p-a~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~ 150 (393)
T PRK11195 92 LLAYGLVGIGAAAYSP-AKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888888 8899999999999999999999999999999999999999885
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-10 Score=98.87 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=96.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.+.+++|+|+.|.+++.++..+.+.+.+++.|.+.||+|.|+ ... +..++.. +-++........++ .+.+
T Consensus 38 ~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~-----~~~--~s~~l~~-IP~~~~~~a~~~~~-~~~l 108 (417)
T COG2223 38 VFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK-----WTI--LSMLLLL-IPCLGLAFAVTYPS-TWQL 108 (417)
T ss_pred hhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH-----HHH--HHHHHHH-HHHHHHHHHccCCc-hHHH
Confidence 5556899999999999999999999999999999999999998 222 2222222 22222222222232 2456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+++.++.|++.+... ....+++..+|++++|.+.|+.. .+|+|.++...+.+.+....
T Consensus 109 l~~gll~G~~GasFa--v~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 109 LVIGLLLGLAGASFA--VGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHhcccceeh--cccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 666677777666533 46788899999999999999999 99999999999998888774
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-10 Score=105.51 Aligned_cols=136 Identities=21% Similarity=0.344 Sum_probs=104.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+.+|++..+++.+.++.++..++++++.|+++|+...++ .....++ .+...++. ...+.... ++.+
T Consensus 322 ~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~-----~~~~~~~-ll~~gl~~---~~~p~~~~-~~~l 391 (509)
T KOG2504|consen 322 PSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRA-----LVLFLLT-LLIAGLAR---LFLPFATT-YVGL 391 (509)
T ss_pred HHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccch-----HHHHHHH-HHHHHHHH---HHHHHhcc-HHHH
Confidence 5566789999999999999999999999999999999988554 2221111 11111211 22233333 4567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
.....+.|++.+.... ....++.|+++.++-..++|+...++.++..+||++.|.+.|..++|...
T Consensus 392 ~~~~~~fG~~~g~~~~-l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~ 457 (509)
T KOG2504|consen 392 IVFSILFGFCVGSFSS-LTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHA 457 (509)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeee
Confidence 7777888888887666 56678999999999999999999999999999999999999987777775
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-10 Score=104.82 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=88.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
.+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.++........ ..+.+.+..++.|
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~-----~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G 138 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK-----SLL---IIALLFVIGAILMGLAAFAL-SVEMLIVGRVLLG 138 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHH-----HHH---HHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 33899999999999999999999999999999998 332 22222222222222222222 2345777888888
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
++.+...+ ....++.|.+|+++|+.+.++.+...++|..+++.+.
T Consensus 139 ~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 139 IGVGIASA-LVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred hhhhHHHh-HHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 88887777 7889999999999999999999999999999999887
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-10 Score=100.41 Aligned_cols=132 Identities=18% Similarity=0.212 Sum_probs=97.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|+.+.++..+...++..++.++.|+++||+|||+ .+. .+ .+...++.+..... + ..+.+
T Consensus 32 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~-----~~~--~~-~~~~~~~~~~~~~~---~-~~~~l 99 (394)
T PRK11652 32 ADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRP-----VIL--VG-MSIFILGTLVALFA---H-SLTVL 99 (394)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH-----HHH--HH-HHHHHHHHHHHHHH---c-cHHHH
Confidence 6677899999999999999999999999999999999999998 332 12 22222222222221 2 24456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...+ ....+..|.++.++++.+.++.+....++..++|.+.+.+.+. .+|+.
T Consensus 100 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~-~g~~~ 163 (394)
T PRK11652 100 IAASAIQGLGTGVGGV-MARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL-FGWRA 163 (394)
T ss_pred HHHHHHHHhhhhHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChHH
Confidence 6677777877765555 5567778888888899999999999999999999999988765 34433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.24 E-value=3e-10 Score=99.70 Aligned_cols=126 Identities=10% Similarity=0.060 Sum_probs=91.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+++|+|..+.+++.+...++..++.++.|+++||+|||+ .+. .+. +...++.+..... + ..+.+
T Consensus 27 ~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~-----~~~--~~~-~~~~~~~~~~~~~---~-~~~~~ 94 (377)
T TIGR00890 27 PPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRA-----VAM--LGG-ILYGLGFTFYAIA---D-SLAAL 94 (377)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccc-----hhH--HhH-HHHHHHHHHHHHH---H-HHHHH
Confidence 7778899999999999999999999999999999999999998 322 122 1212222222221 1 34456
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ .....+.+.+| ++|+.+.++......+|..+++++.+.+.+.
T Consensus 95 ~~~~~~~g~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 152 (377)
T TIGR00890 95 YLTYGLASAGVGIAYG-IALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINL 152 (377)
T ss_pred HHHHHHHhHHHHHHHH-hHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhc
Confidence 6666778888776555 55666777776 5699999999999999988777777666554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.3e-10 Score=100.82 Aligned_cols=123 Identities=17% Similarity=0.144 Sum_probs=91.9
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh-----c---CCCCchhH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV-----L---PDDPSTGF 132 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~ 132 (329)
++.+..+.+++.+...++.+++.++.|+++||+|||+ .+. ...+...++.+.... . ........
T Consensus 50 ~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~-----~~~---~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 121 (479)
T PRK10077 50 ESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD-----SLK---IAAVLFFISALGSAWPEFGFTSIGPDNTGYVP 121 (479)
T ss_pred ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-----HHH---HHHHHHHHHHHHHHhhccccccccccchhHHH
Confidence 4899999999999999999999999999999999998 333 111111122211111 0 01112244
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.+.+..++.|++.+...+ ...+++.|.+|+++||.+.++.+....+|..+++.+.+.+.
T Consensus 122 ~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 122 EFVIYRIIGGIGVGLASM-LSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred HHHHHHHHHhhhHhHHhh-HHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567888999999998888 88999999999999999999999988888888876655544
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-10 Score=102.25 Aligned_cols=128 Identities=18% Similarity=0.256 Sum_probs=98.5
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+. +.+|.++...|++.+..++|.++|+++.+++.+|+++++ ++. ...+...++.+.+.. .+ +.+.
T Consensus 242 Pl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~-----lv~---~~~~~~a~~~~~lal---~~-~~~~ 309 (524)
T PF05977_consen 242 PLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRR-----LVL---LASLLFALALLLLAL---SP-SFWL 309 (524)
T ss_pred hHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcch-----hhH---HHHHHHHHHHHHHhc---ch-HHHH
Confidence 7776 678999999999999999999999999999998888776 222 222222222222221 22 3445
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..+.+++.|++...... ...+.+++..|++.||+++|++.+..+.+..+|..+.|.+.+..
T Consensus 310 ~~~~l~l~G~~~~~~~~-~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~ 370 (524)
T PF05977_consen 310 ALIALFLAGAAWIIANS-SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF 370 (524)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677778887777666 67888999999999999999999999999999999999999874
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-10 Score=99.67 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=94.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-----VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
|.|+++.|+|.++.|++...... .+..++.|+++||+ ||||+ ++ ..+.+...++...+.......
T Consensus 23 ~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~-----~l--~~~~~~~~l~~~~l~~~~~~~- 92 (402)
T PRK11902 23 QAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRG-----WL--LLTQVGLAASIAAMAFCPPHA- 92 (402)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchh-----HH--HHHHHHHHHHHHHHHhcCccc-
Confidence 88898899999999999766654 68889999999999 77662 22 122222222222222222222
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
..+.+.+..++.+++.....+ ...+++.|..|+++|+.+.++......+|..+++.+.+.+.+...+|+.
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~ 162 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDI-VFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN 162 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH
Confidence 234445554556666666666 7889999999999999999999999899999999998888775334444
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.8e-10 Score=102.54 Aligned_cols=123 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc--hhHHHHHHHH
Q 041066 62 GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS--TGFMHGLVLV 139 (329)
Q Consensus 62 g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 139 (329)
..+..+.+++.+...++.+++.++.|+++||+|||+ .+. ...+...++.+.......... ....+.+..+
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~-----~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~ 123 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKR-----VYG---MELIIMIIATVASGLSPGSSPKSVMATLCFWRF 123 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH-----HHH---HHHHHHHHHHHHHHHccCcccchHHHHHHHHHH
Confidence 345667788999999999999999999999999998 332 222222222222222222111 1456788888
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
+.|++.+...+ ...++++|.+|++.||.+.++.+....+|..+++.+...+..
T Consensus 124 l~G~~~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~ 176 (502)
T TIGR00887 124 WLGVGIGGDYP-LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA 176 (502)
T ss_pred HHHHHHhhhhH-HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888 889999999999999999999999999999999988876654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-12 Score=108.26 Aligned_cols=133 Identities=13% Similarity=0.086 Sum_probs=106.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
-..+.++++++..|++...+.+..++++++.|++.||+.|++. +. ++..+-. .+.+.... ..+.|.+.
T Consensus 58 ~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-----~~--vG~~iW~-~Av~~~~f----s~~Fwq~~ 125 (493)
T KOG1330|consen 58 EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-----IA--VGIFIWT-LAVFASGF----SNHFWQVL 125 (493)
T ss_pred HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-----Ee--eHHHHHH-HHHHHHHH----HHHHHHHH
Confidence 3446799999999999999999999999999999999999983 22 1111111 11111111 14678899
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
++..+.|+|-+...| +.+++++|.+|..+|+++++++++...+|+++|-..++.+.+..+.|++.
T Consensus 126 l~R~~vGiGeAs~~~-ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~a 190 (493)
T KOG1330|consen 126 LCRGFVGIGEASYSP-IAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWA 190 (493)
T ss_pred HHHHHhccchhhhcc-cchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEE
Confidence 999999999999898 99999999999999999999999999999999999988888876667764
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-10 Score=99.57 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=91.8
Q ss_pred HHHHHHhCCChhH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 AYVVRTIGFSHGL-----TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~-----~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
|.+.+++|++..+ .+++.+...++..++.++.|+++||+|||+ .+. ...+...+..+.+.. .+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~---~~- 105 (408)
T PRK09874 38 PLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKI-----MLL---RSALGMGIVMVLMGL---AQ- 105 (408)
T ss_pred HHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHH-----HHH---HHHHHHHHHHHHHHH---Hh-
Confidence 6677788988654 478888889999999999999999999987 332 222222222222222 11
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+.+.+.+..++.|++.+. .+ ....++.+..|+++|+.+.++.+....+|..++|.+.+.+.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 168 (408)
T PRK09874 106 NIWQFLILRALLGLLGGF-VP-NANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS 168 (408)
T ss_pred hHHHHHHHHHHHHHhhhh-HH-hHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244456666777776543 45 5677888889999999999999999999999999999988876
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=110.10 Aligned_cols=126 Identities=12% Similarity=0.196 Sum_probs=91.8
Q ss_pred HHHH-HHhCCChh-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVV-RTIGFSHG-LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~-~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
|.+. +.+|++.. ..+++.+...++.+++.++.|++.||+++++ ++. + ..+...++.+.+... . ..+
T Consensus 256 ~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~-----~~~--~-~~~~~~~~~~~~~~~---~-~~~ 323 (1146)
T PRK08633 256 PAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELG-----LVP--L-GALGLALSLFLLPTA---P-SLA 323 (1146)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEcc-----chh--H-HHHHHHHHHHHHHHh---h-hHH
Confidence 5444 67899998 9999999999999999999999999998876 222 1 111111222222211 1 234
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+.++.++.|++.+...+ ...+++.+..|++.||+++|+.+++.++++++++.+++.+..
T Consensus 324 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 324 SVLVLFFLFGFSAGLFIV-PLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHHHHHHHhhH-HHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777888777666 678889999999999999999999999998888777665543
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-11 Score=108.37 Aligned_cols=92 Identities=25% Similarity=0.570 Sum_probs=67.2
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcC-CCCCC---CCC----------ccc----cCCcc---------hhHH-HHH
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKD-TRCSD---GKS----------RAK----DQKPH---------KAFC-FVI 53 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~---~~~----------~~~----~~~~~---------~~~~-f~~ 53 (329)
...||||.|++.|++.++.++++++++|+ |.... ..+ ... +.++. +.+| |++
T Consensus 201 ~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l 280 (495)
T KOG2533|consen 201 GLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSL 280 (495)
T ss_pred CcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHH
Confidence 35799999999999999999999999987 65211 000 000 00121 2333 111
Q ss_pred --H-------------HHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041066 54 --F-------------AYVVRT-IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL 93 (329)
Q Consensus 54 --~-------------~~~~~~-~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~ 93 (329)
+ |++++. .|+|..+++.+.++..++++++.+++|+++||+
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence 1 777765 679999999999999999999999999999995
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.3e-10 Score=98.86 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=89.7
Q ss_pred HHH-HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYV-VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~-~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+ .+++|.|+.+.|++.+...+...+..++.|+++||+|||+ .+. ....+......+.... .++ .+.
T Consensus 21 ~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~-----~~~--~~~~~~~~~~~~~~~~---~~~-~~~ 89 (375)
T TIGR00899 21 SLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRK-----GLI--LFCCLLAALACLLFAW---NRN-YFL 89 (375)
T ss_pred HHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-----HHH--HHHHHHHHHHHHHHHh---cch-HHH
Confidence 444 4789999999999999999999999999999999999987 322 1112211122222222 222 333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHH--HHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSI--YALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.+..++.+.+.+...| ...++..|..|++.|+.+ .++.....++|..++|.+.+.+.+. .+|+.
T Consensus 90 l~~~~~~~g~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~-~~~~~ 156 (375)
T TIGR00899 90 LLVLGVLLSSFASTANP-QLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG-FGFTV 156 (375)
T ss_pred HHHHHHHHHhhhhhhHH-HHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh-cccHH
Confidence 44444555555555555 566777787776666644 6778888889999999999998876 34444
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=97.24 Aligned_cols=174 Identities=11% Similarity=0.174 Sum_probs=101.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCcc-------ccCCcchhHH------HHHH----------HHHHHH
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRA-------KDQKPHKAFC------FVIF----------AYVVRT 60 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~-------~~~~~~~~~~------f~~~----------~~~~~~ 60 (329)
.+||++|++.+++.++..++.. +.+.|+.+..+..+ ++..++|+++ |.+. +.|.++
T Consensus 183 ~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~ 261 (410)
T TIGR00885 183 ASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVR 261 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4799999998887666554443 33333211111100 0112334444 2211 333332
Q ss_pred h--CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 61 I--GFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 61 ~--g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
. +.+....+...+....+..+|+++++++.||+++|+ ++. +...++. +..+.....+ .. ....++
T Consensus 262 ~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~-----~l~--i~~~~~~-~~~ll~~~~~---~~--~~~~~l 328 (410)
T TIGR00885 262 LIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK-----VLM--AYAIIGM-ALCLGSIFAG---GH--VGLYCL 328 (410)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH-----HHH--HHHHHHH-HHHHHHHHcC---Ch--HHHHHH
Confidence 2 444455555666666788999999999999999887 332 2222222 2222222211 11 134556
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++.|++.+..+| ..++...+..+++.+..+.++.... +|+++.|++.|.+.|.
T Consensus 329 ~~~glf~s~~fp-~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 329 TLCSAFMSLMFP-TIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHHHHH-HHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 667777777777 8888888888877544444444433 9999999999999996
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1e-09 Score=98.51 Aligned_cols=128 Identities=15% Similarity=0.084 Sum_probs=97.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+++.+.+++.+.+.++..++.++.|+++||+|+|+ .+. ...+...++.+.+......+ ....+
T Consensus 50 p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~-----~l~---~g~~~~~~~~~l~~~~~~a~-~~~~l 120 (438)
T PRK10133 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-----GII---TGLFLYALGAALFWPAAEIM-NYTLF 120 (438)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH---HHHHHHHHHHHHHHHHHhcC-CHHHH
Confidence 7788899999999999999999999999999999999999998 332 22222223322221111122 35567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.+.+++.|++.+...+ ..++++.+..++++++...++.+....+|..+++.+++.+.
T Consensus 121 l~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 121 LVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999888777 77888888866666666899999999999999999987665
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-10 Score=97.22 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=101.9
Q ss_pred HHHHHHhCCChhH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVRTIGFSHGL-TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~-~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|++.+++|+|..+ .|.+...+..+..++.+++|+++||+|.|+ ++. ..++.-.+..++..+ ......
T Consensus 50 p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~-----vL~---l~~l~Wsl~t~L~~f----a~Sl~~ 117 (511)
T TIGR00806 50 PYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKP-----VLV---LQALSFVCVWLLLLL----GTSVWH 117 (511)
T ss_pred HHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHH---HHHHHHHHHHHHHHH----HHHHHH
Confidence 7777899999999 999999999999999999999999999998 332 222222222222221 113566
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.+..++.|++.+... ....++...+|+++|++++|+.+....+|.++++++.+++. . .+|..
T Consensus 118 L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s-~gWr~ 180 (511)
T TIGR00806 118 MQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T-LGWIS 180 (511)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cCchh
Confidence 8888899999988766 47889999999999999999999999999999999999843 3 34444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-10 Score=102.09 Aligned_cols=132 Identities=13% Similarity=0.157 Sum_probs=93.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...+..+..... ++.+...
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~---~~~~~l~ 111 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRP-----VVI---AGGLLASLGMILASFS---SNVIELY 111 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchH-----HHH---hhHHHHHHHHHHHHHh---hhHHHHH
Confidence 6677889999999999999998888999999999999999998 333 2222222222222221 1112222
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
....++.|++.+...+ ....++.+.++ ++|+++.|+.+....+|+.++|.+.+.+.+. .+|+.
T Consensus 112 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~-~gwr~ 174 (455)
T TIGR00892 112 LTAGFITGLGLAFNFQ-PSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFES-FGWRG 174 (455)
T ss_pred HHHHHHHHhcchhhhh-HHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH-hChHH
Confidence 2233566777765545 45677778876 6799999999999999999999999998886 35544
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=103.64 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=99.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++.+++.++.|+++||+|||+ .+. ...+...++.+..... . +.+.+
T Consensus 44 ~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~l 111 (496)
T PRK03893 44 TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL-----AMV---ISIVLFSVGTLACGFA---P-GYWTL 111 (496)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHH---HHHHHHHHHHHHHHHH---h-HHHHH
Confidence 6677889999999999999999999999999999999999998 332 2222222222222221 1 34556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ....++.|.+|+++|+.+.++.+...++|..+++.+.+.+.+.
T Consensus 112 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 170 (496)
T PRK03893 112 FIARLVIGMGMAGEYG-SSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPV 170 (496)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7778888888877666 6788899999999999999999999999999999999988765
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-09 Score=93.41 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=87.8
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.+. +.+|.++.+.|++.++..++.++++++.+++.||.++++ .+. .+..++ .....+.. .+ +.+.
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~-----~~~--~g~~~~--~~~~~~~~---~~-~~~~ 295 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLR-----VLP--AGILMG--LVVLLMAL---QH-SLLP 295 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-----hHH--HHHHHH--HHHHHHHH---Hh-HHHH
Confidence 4444 578999999999999999999999999999999887776 222 121111 11111111 11 2333
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcc-hhHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERS-RTSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
..+..++.|++.+...+ ...+.+++..|++. +|.+.|+.+..++++..++..+.+.+
T Consensus 296 ~~~~~~~~G~~~g~~~~-~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 296 AYPLLILIGALGGFFVV-PMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHHHHHHHHHhhhhhhh-hHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45566677887777666 67788888766554 79999999999999999999998865
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.2e-10 Score=97.23 Aligned_cols=125 Identities=14% Similarity=0.100 Sum_probs=95.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..+.+++.+...++..++.++.|+++||+|+|+ .+. ...+....+.+.. . .+ ..+.+
T Consensus 24 p~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~-----~~~---~~~~~~~~~~~~~-~---~~-~~~~l 90 (355)
T TIGR00896 24 PQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEER-----SVA---AGLLLIAAGILIR-S---AP-GTALL 90 (355)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchH-----HHH---HHHHHHHHHHHHH-H---hc-cHHHH
Confidence 7788999999999999999999999999999999999999998 332 1222222222222 1 12 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ....++.+.+| ++|+.+.++.+...++|..+++.+.+.+.+.
T Consensus 91 ~~~~~~~g~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 91 FAGTALIGVGIAIINV-LLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred HHHHHHHHHHHHHHhc-cchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6667777887776665 56677788876 5799999999999999999999998888765
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-09 Score=91.30 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=92.9
Q ss_pred HHHHHHhC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCch-hH
Q 041066 55 AYVVRTIG-FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPST-GF 132 (329)
Q Consensus 55 ~~~~~~~g-~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 132 (329)
+.|.++.| .+....+.+.+...++.++.-...+++..|+|.++ ++ ..+.++.++=..++....++... ..
T Consensus 231 ~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~-----ll---~~a~~~~~vR~~l~a~~~~~~~~~~~ 302 (400)
T PF03825_consen 231 SIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKW-----LL---LLALVAYAVRWLLYAYFSDPWPFIVA 302 (400)
T ss_pred HHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-----HH---HHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 55667777 78888888888888899999999999999999887 32 23333333433333332221111 11
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHH-HHHhhhHHHHHHHHhhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFE-SILASFAPPVVGLLAQHV 195 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~g~l~~~~ 195 (329)
...+...+.|+..+.... ....++.+..|++.|+++.++++... .+|+++|..++|++.|+.
T Consensus 303 ~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~ 365 (400)
T PF03825_consen 303 LQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF 365 (400)
T ss_pred HHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 112222356776666565 67888999999999999999998865 589999999999999984
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.4e-10 Score=99.91 Aligned_cols=127 Identities=7% Similarity=-0.046 Sum_probs=97.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.|..+.|++.+...++..++.++.|+++||+|||+ .+. ...+...++...... .+ +.+.+
T Consensus 30 p~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~-----~~~---~~~~~~~~~~~~~~~---~~-~~~~l 97 (381)
T PRK03633 30 PLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR-----SYY---LASLIFAAGCAGLGL---MV-GFWSW 97 (381)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHH---HHHHHHHHHHHHHHH---hc-cHHHH
Confidence 7788889999999999999999999999999999999999998 332 222222222222222 12 24556
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+.+.+..++++|+.+.++.+...++|..+||.+.+.+.+.
T Consensus 98 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 156 (381)
T PRK03633 98 LAWRFVAGIGCAMIWV-VVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 6778888888877666 5556667778888999999999999999999999999887654
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-10 Score=102.43 Aligned_cols=132 Identities=19% Similarity=0.249 Sum_probs=105.6
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
..+.++..+.+++++....|.+++.+.+|++.||+|.|+ +.. .+.++......+.-.... ...+.+.++.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~-----v~~--~~~~~sa~~t~l~P~aa~---~~~~~~~~~R 135 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARR-----VFF--ISGLISALLTLLTPLAAS---IGFYLLLVLR 135 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchH-----HHH--HHHHHHHHHHHHHHHHHH---hcchhhHHHH
Confidence 468899999999999999999999999999999999998 332 222222222222221111 1123578899
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
++.|++.+...| ....+.....|+++|++..++.....++|.+++-++.|.+.+...||...
T Consensus 136 ~lqGl~~g~~~p-a~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~si 197 (466)
T KOG2532|consen 136 FLQGLGQGVLFP-AIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSI 197 (466)
T ss_pred HHhHHHHhHHHh-hhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchH
Confidence 999999999999 88999999999999999999999999999999999999999986677774
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.6e-10 Score=105.80 Aligned_cols=126 Identities=17% Similarity=0.231 Sum_probs=95.7
Q ss_pred HHHHHHhCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 041066 55 AYVVRTIGFS---HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTG 131 (329)
Q Consensus 55 ~~~~~~~g~s---~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (329)
|.+.++++++ ..+.++..+...++.+++.++.|+++||+|||+ .+. ++ .+...++.+.... .+ ..
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~-----~~~--~~-~~~~~i~~~~~~~---~~-~~ 180 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK-----VLL--LS-TLVTAVSGVLTAF---SP-NY 180 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH-----HHH--HH-HHHHHHHHHHHHH---cc-cH
Confidence 4455678888 889999999999999999999999999999998 332 22 2222222222222 12 34
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
+.+.+..++.|++.+...+ ...+++.|.+|+++|+.+.++......+|.++++.+...+.+
T Consensus 181 ~~~~~~r~l~G~~~~~~~~-~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~ 241 (505)
T TIGR00898 181 TVFLVFRLLVGMGIGGIWV-QAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD 241 (505)
T ss_pred HHHHHHHHHHHhhccchHH-HHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5677788889999888777 789999999999999999999988888888888877655543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.4e-10 Score=101.43 Aligned_cols=133 Identities=20% Similarity=0.240 Sum_probs=103.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.++.+..-|+...+++.+...+-.++.++++|.++||++||+ +++. .-.+......++...........+.+
T Consensus 34 ~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrr-----ili~--~~~~~~~~~~~L~~l~~~~~~~~~~L 106 (524)
T PF05977_consen 34 AWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRR-----ILIL--SQLLRALVALLLAVLAFFGLLSPWLL 106 (524)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH-----HHHH--HHHHHHHHHHHHHHHHHhCcCCHHHH
Confidence 6666667789999999999999999999999999999999998 4442 22222211111111111222345667
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
++..++.|++.....| ...+++.+++|+++...+.++.+...++...+||.++|.++...
T Consensus 107 l~~~fl~g~~~a~~~P-A~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 107 LILTFLLGIGSAFFNP-AWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7788889999998888 88999999999999999999999999999999999999998764
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=94.42 Aligned_cols=130 Identities=12% Similarity=0.011 Sum_probs=89.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-----VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
|.+.++.|+|.++.|++... .+...+ .++.|+++||+ |||+ .++ +...+...+.......... ..
T Consensus 12 ~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~-----~~l--~~~~~~~~~~~~~l~~~~~-~~ 81 (356)
T TIGR00901 12 PYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRR-----SWL--VLTQVLLLSLLLILSFLVP-ST 81 (356)
T ss_pred HHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccH-----HHH--HHHHHHHHHHHHHHHcCCc-ch
Confidence 78889999999999998655 333344 88999999998 6666 322 1222222222222222222 22
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..+.+....++.+++.+...+ ...+++.|.+|+++|+.+.++.....++|..+++.+.+.+....
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~ 146 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDI-ALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPE 146 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 233444555556666665556 67889999999999999999999999999999999998887764
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.3e-10 Score=90.78 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=97.6
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.++ +.+|+|+..++.+.+.......+.+++.|.++||.|++. .++ ....+....+-..+.+ ...+
T Consensus 288 ~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv--~~a~~~tl~~H~~l~F-t~ls----- 354 (459)
T KOG4686|consen 288 PMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWV--ASACILTLLGHSGLFF-TFLS----- 354 (459)
T ss_pred HHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhH--HHHHHHHHHHhhhHHh-hhcc-----
Confidence 5444 789999999999999888889999999999999999986 322 2222222222222211 1111
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
....+.++|+....... ..|..++.++|.++-|+++|..+..+|+|-++.|.+.|.+.|..++|..
T Consensus 355 Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~ 420 (459)
T KOG4686|consen 355 PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDN 420 (459)
T ss_pred HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhh
Confidence 33455566776666544 6788999999999999999999999999999999999999998666655
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.9e-10 Score=99.90 Aligned_cols=128 Identities=12% Similarity=0.015 Sum_probs=90.1
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHH-Hhc---C--CCCchhH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLL-LVL---P--DDPSTGF 132 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~~ 132 (329)
+.+|+++...|++..+.+++.+++..+.+++.+|++.|+ ++. ...+...++.... ... . ......+
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~-----~l~---~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~ 352 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRL-----LFG---VTTLLYTLSSLFDLILVKRWNLAFGISDEV 352 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHH-----HHH---HHHHHHHHHHhCceeeeeccccccCCCCee
Confidence 578999999999999999999999999999988888776 222 2211111111111 000 0 0001112
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
.+....++.+++.+.... +...++++..|++.+|+.+|+.+.+.++|..+++.+++.+.+..
T Consensus 353 ~~~~~~~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~ 414 (468)
T TIGR00788 353 FVLGDSIIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETI 414 (468)
T ss_pred eeeehhHHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 233344555666655565 67999999999999999999999999999999999999998874
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.6e-10 Score=86.39 Aligned_cols=109 Identities=14% Similarity=0.240 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCC
Q 041066 73 TLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTT 152 (329)
Q Consensus 73 ~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (329)
+...++.+++.++.|++.||+|||+ .+. ....+.. ...+..... . ..+...+..++.|++.+...+ .
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~-----~~~--~~~~~~~-~~~~~~~~~---~-~~~~~~~~~~~~g~~~~~~~~-~ 71 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKP-----VLL--VGLFIFV-LSTAMFALS---S-NITVLIIARFLQGFGAAFALV-A 71 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhH-----HHH--HHHHHHH-HHHHHHHHh---c-cHHHHHHHHHHHHHHHHHHHH-h
Confidence 3456788899999999999999988 332 1111111 222222111 2 234456667778888777666 7
Q ss_pred chhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 153 NNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...++.|..|+++|+++.++.+...+++..+++.+.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 113 (141)
T TIGR00880 72 GAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQF 113 (141)
T ss_pred HHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcc
Confidence 888999999999999999999999999999999999988765
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=95.49 Aligned_cols=129 Identities=15% Similarity=0.085 Sum_probs=86.7
Q ss_pred HHHHHHhC---CChhHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 55 AYVVRTIG---FSHGLT---VFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 55 ~~~~~~~g---~s~~~~---~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
|++.++++ .+..+. +..++...++..++.++.|+++||+|||+ .+. ...+...++.+.....+...
T Consensus 46 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~-----~l~---~~~~~~~~~~~~~~~~~~~~ 117 (432)
T PRK10406 46 LYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKK-----SML---ISVCMMCFGSLVIACLPGYE 117 (432)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH-----HHH---HHHHHHHHHHHHHhhcCCch
Confidence 66667764 455543 33444555666699999999999999998 332 22222223233322222111
Q ss_pred ----chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 129 ----STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 129 ----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.....+.++.++.|++.+...+ ...+++.|..|+++||...++.......|..+++.+...+.
T Consensus 118 ~~~~~~~~~l~~~R~l~G~g~g~~~~-~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 118 TIGTWAPALLLLARLFQGLSVGGEYG-TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhHh-hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133577888899999988888 78999999999999999999988877777777776654443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-10 Score=95.28 Aligned_cols=117 Identities=17% Similarity=0.144 Sum_probs=92.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
.+....|++.+.+.++..+.++..|.++||+|||. .+ ..+.++..+....+.. +.+ ...+.+..++.|
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkp-----vl---l~c~~~va~s~ll~~~---S~~-F~afv~aR~l~G 132 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKP-----VL---LACLIGVALSYLLWAL---SRN-FAAFVLARFLGG 132 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchH-----HH---HHHHHHHHHHHHHHHH---HHH-HHHHHHHHHhhh
Confidence 35677899999999999999999999999999997 22 3333333333333322 222 344556688899
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
++-+... +..++++|++++++|+.+++.++....+|-.+||.++|++..
T Consensus 133 i~kgnl~--v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 133 IFKGNLS--VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hccCchH--HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 9888754 489999999999999999999999999999999999999987
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=93.36 Aligned_cols=127 Identities=13% Similarity=0.017 Sum_probs=85.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc--CCCCchhH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL--PDDPSTGF 132 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 132 (329)
|.+.+++|+|..+.+++..... ...++.+++|++.||+|+|+ ++. ...+...++.++.... .......+
T Consensus 51 ~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~-----vll---ig~ll~~iG~ll~ala~~~~i~~s~~ 121 (591)
T PTZ00207 51 GAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRP-----IFV---LSMTVFCLGTLLFALTFQEVIEGSVV 121 (591)
T ss_pred HHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHH-----HHH---HHHHHHHHHHHHHHHHhcccccCcHH
Confidence 6677899999999998887643 33456678899999999998 332 2222222222222221 11112456
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.+.+..++.|++.+...+ .....+.+.+| ++||.+.|+......+|+++.+.+...+.
T Consensus 122 ~l~l~r~l~G~G~~~~~~-~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 122 RLSVYNGLMTLGCMLFDL-GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777788888776666 55667788886 66999999999999999976555544443
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=93.55 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=92.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.|..+.|++.+...+...++.++.|+++||+||+.. .... .. ....... ..+... .+ ..+.+
T Consensus 28 ~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~----~~~~-~~-~~~~~~~-~~~~~~--~~-~~~~l 97 (382)
T PRK11128 28 SVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIP----ALRL-LA-LLTLLFA-VAFWFG--AH-SFWLL 97 (382)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHH----HHHH-HH-HHHHHHH-HHHHHh--cc-cHHHH
Confidence 56778899999999999999999999999999999999998531 0011 11 1111111 111111 12 24455
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+..++.|++.+...| ...++..+. .++|+.+.+......++|.++||.+++++.+. .+|+.
T Consensus 98 ~i~~~l~g~~~~~~~~-~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~-~g~~~ 159 (382)
T PRK11128 98 FVAIGLFNLFFSPLVP-LTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW-FGEQA 159 (382)
T ss_pred HHHHHHHHHHHccccc-HHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-cChhH
Confidence 5666777877777666 566666665 34578888999999999999999999999887 45544
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=91.81 Aligned_cols=128 Identities=17% Similarity=0.236 Sum_probs=101.4
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
..+-+.++.|++++...+..++.+++.|.++||+|.|.+ + +.....+..+.+++.+. . .++.+.++..
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-----m---~~Gl~vmf~sTilFafg---~-sy~~l~vAR~ 167 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-----M---VAGLFVMFLSTILFAFG---N-SYPMLFVARS 167 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-----H---HHHHHHHHHHHHHHHHc---c-hhHHHHHHHH
Confidence 355677899999999999999999999999999999973 1 22222222333333331 2 3456889999
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcc-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERS-RTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
+.|++.++... ...+++++.+|++. |++++|+.-.+..+|-.+||+++|.+++. .|+...
T Consensus 168 LQgvgsA~~~t-sglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~-~Gk~aP 228 (464)
T KOG3764|consen 168 LQGVGSAFADT-SGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF-AGKSAP 228 (464)
T ss_pred HhhhhHHHHHh-hhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh-cCCcCc
Confidence 99999998887 78999999998765 79999999999999999999999999998 566554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-08 Score=90.16 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=81.7
Q ss_pred HHhCCChh---HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHH
Q 041066 59 RTIGFSHG---LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHG 135 (329)
Q Consensus 59 ~~~g~s~~---~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (329)
..++-++. ..++...+..++..+|.++.|.+..++++-| ..+ +++..+.......+....+++.. . ..
T Consensus 339 ~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~K-----w~l-i~~~~~~ta~~Gama~~~~~n~~-~--~i 409 (599)
T PF06609_consen 339 NVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIK-----WQL-IFGSVLMTAFCGAMAAVRPDNKN-A--AI 409 (599)
T ss_pred hhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchh-----HHH-HHHHHHHHHHHHHHHHccCCCcc-h--HH
Confidence 34555442 5677888888999999999999998887655 221 12222222222222222222222 2 33
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...++.|++.++... +.....+-..|++.-|+++|+...++.+|+++|..+...+...
T Consensus 410 ~~~~l~g~giG~~~~-~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n 467 (599)
T PF06609_consen 410 AFLVLAGFGIGGILV-PAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN 467 (599)
T ss_pred HHHHHHHHhHHHHHH-HHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 445666777776555 5566666678999999999999999999999998887665543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-10 Score=105.53 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=103.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcC---------
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLP--------- 125 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 125 (329)
+.+.+.++++..+.|++.+.+.++..++.++.+++.||.+||+......++ ..++.+++.+..
T Consensus 57 ~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll--------~~lg~ll~alphf~~~~y~~~ 128 (633)
T TIGR00805 57 TTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAI--------MGLGSFLLSLPHFLSGRYSYS 128 (633)
T ss_pred hhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHH--------HHHHHHHHhChHHhcCCcccc
Confidence 667788999999999999999999999999999999999998843211111 111111111110
Q ss_pred -------------------C-----------------C--CchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchh
Q 041066 126 -------------------D-----------------D--PSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRT 167 (329)
Q Consensus 126 -------------------~-----------------~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 167 (329)
. . ...+..+++..++.|++.+...+ ...+++.|.+|+++|+
T Consensus 129 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~-~~~~~i~d~~~~~~~~ 207 (633)
T TIGR00805 129 TTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFP-LGISYIDDFAKSKNSP 207 (633)
T ss_pred ccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchh-cCchhhhccCCccccH
Confidence 0 0 11245567889999999988888 8899999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhhhhcCC
Q 041066 168 SIYALDRSFESILASFAPPVVGLLAQHVHGY 198 (329)
Q Consensus 168 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~ 198 (329)
...|+.+....+|.++|+.+++.+.+...+|
T Consensus 208 ~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~ 238 (633)
T TIGR00805 208 LYIGILESIAVFGPAFGYLLGSFCLQIYVDT 238 (633)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988764333
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-09 Score=106.72 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=92.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 041066 66 GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145 (329)
Q Consensus 66 ~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (329)
...++..+.+.+..++.++++|+++||+|||+ ++.......+......+..... ...+.++++.++.|++.
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~-----~~~~~~~~~~~~~~~~~~~~~~----~s~~~l~~~~~l~gi~~ 122 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAK-----LAKILKFAEIGIAALAIYGFHL----NSVPLLFAALFLMGIHS 122 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHH-----HHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHH
Confidence 44677777888999999999999999999998 4322111111111111111111 23566788889999999
Q ss_pred hccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCC
Q 041066 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYK 199 (329)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~ 199 (329)
+...| ...+++.+++++++++.++|+.++..++|.++||.++|++.+. .+|.
T Consensus 123 a~~~p-~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~-~~~~ 174 (1140)
T PRK06814 123 ALFGP-IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS-GNFV 174 (1140)
T ss_pred Hhhch-HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc-cccH
Confidence 98888 8899999999999999999999999999999999999999886 3443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.5e-09 Score=92.53 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=110.5
Q ss_pred HHhC----CChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 59 RTIG----FSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 59 ~~~g----~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
.+++ ++.+++.-++..+....-+..+++||++|| +|+|+ +++...+.+.++-+.+.... ......
T Consensus 50 ~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~--------tI~lGail~~iGh~~L~~~~--~~~~~g 119 (498)
T COG3104 50 YQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR--------TIVLGAILMAIGHLVLAISS--VSGPGG 119 (498)
T ss_pred HhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH--------HHHHHHHHHHHHHHHHhccc--cccccH
Confidence 5666 999999888888888788889999999999 58877 33334444434444443322 012334
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCc--chhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCCCCCCCCcchh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPER--SRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPVPKGASNSLEV 211 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 211 (329)
+.+.+.++++|.|..=+ ...+++.|.+|++ +|..+++++.+..|+|+.++|.+.+++.++ .+|...
T Consensus 120 l~i~L~~I~iG~Gl~K~-NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-~g~~~g---------- 187 (498)
T COG3104 120 LYIGLALIIVGTGLFKP-NISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-YGWHVG---------- 187 (498)
T ss_pred HHHHHHHHHhccccccc-cHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHh-hCHHHH----------
Confidence 77778888899998887 8899999998753 388899999999999999999999999988 444442
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 041066 212 ETDRENAASLAKALYTAIGIPMTICCFIYSFLYCT 246 (329)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (329)
+...++.+.++.+.+...++.
T Consensus 188 --------------F~~aavGm~~gl~~f~~~~r~ 208 (498)
T COG3104 188 --------------FGLAAVGMIIGLVIFLLGRRH 208 (498)
T ss_pred --------------HHHHHHHHHHHHHHHHHccch
Confidence 455556666677766665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-09 Score=104.51 Aligned_cols=130 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred HHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVVRTIGFSH--GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~~~~g~s~--~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
+++...++.+. ...+++.+.+.++.+++.+++|+++||+|||+ ++.. +..+..+...+..... ... ..+
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~-----~l~~--~~~~~~~~~~~~~~~~-~~~-~~~ 104 (1146)
T PRK08633 34 NTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNR-----VIRI--VKLFEVGLTLLIVLAY-YLG-WFW 104 (1146)
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHH-----HHHH--HHHHHHHHHHHHHHHH-HHc-cHH
Confidence 34444555543 34677888889999999999999999999998 4331 1111111111111110 011 255
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+.+..++.|++.+...+ ...+++.|.+|+++|+.++|+.....++|.++|+.+++++.+.
T Consensus 105 ~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 105 LAFAVTFLLGAQSAIYSP-AKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHhhch-HHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677788888999888787 7889999999999999999999999999999999999998875
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=90.40 Aligned_cols=131 Identities=16% Similarity=0.101 Sum_probs=82.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC-CchhH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD-PSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 132 (329)
|.++ +++|+++.+.|++.+...++..++.++.|+++||+|||+ .+................+...+.. .....
T Consensus 26 ~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (396)
T TIGR00882 26 PIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK-----HLLWIISGLLVLFAPFFIYVFGPLLQSNILV 100 (396)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH-----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444 678999999999999999999999999999999999998 3321111111111111111111100 01112
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
...+..++.|++.+...+ ....+..+.. +.++...|......++|.+++|.++|.+.+
T Consensus 101 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~ 158 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAG-AIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFS 158 (396)
T ss_pred HHHHHHHHHHHHhccchh-hHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhc
Confidence 233334556666665555 5555555542 224567788888889999999999887765
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-09 Score=92.77 Aligned_cols=131 Identities=15% Similarity=0.085 Sum_probs=75.4
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHH-HHHHHhcCC-CCchh
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIA-AVLLLVLPD-DPSTG 131 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~ 131 (329)
|.++ +++|+|+.+.|++.+...++..++.++.|+++||+|+|+ .+...... ...... ......... .....
T Consensus 34 ~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 107 (420)
T PRK09528 34 PIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKK-----HLLWIISG-LLVLFGPFFIYVFAPLLQYNIL 107 (420)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 569999999999999999999999999999999999998 33211111 111111 111000000 00000
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
....+..+..+.+.....+ ....+..+. .+.++..+|......++|.+++|.+.|.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 167 (420)
T PRK09528 108 LGAIVGGIYLGFGFLAGAG-AIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI 167 (420)
T ss_pred HHHHHHHHHhhhhhccchh-hhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence 0011111122222222122 222222222 23467788999999999999999999988763
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=92.83 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHHHHHhCCChhH----HHH--HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 55 AYVVRTIGFSHGL----TVF--LMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~----~~~--~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
|++.+.++.+... .+. ..+...++..+|.++.|+++||+|||+ .+. ...+...++.+.....++..
T Consensus 40 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~-----~l~---~~~~l~~i~~~~~a~~~~~~ 111 (490)
T PRK10642 40 YALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQK-----ILA---ITIVIMSISTFCIGLIPSYA 111 (490)
T ss_pred HHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHH---HHHHHHHHHHHHHHhcccHH
Confidence 5555666533221 122 135567889999999999999999998 332 22222223333333222111
Q ss_pred c----hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 129 S----TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 129 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
. ....+.++.++.|++.+...+ ...+++.|.+|+++||...++......+|..+++.+...+.
T Consensus 112 ~~g~~a~~~l~~~R~l~G~g~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 112 TIGIWAPILLLLCKMAQGFSVGGEYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhHhHhhHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012367788899999988887 78899999999999999999998888888888877665544
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.3e-09 Score=92.43 Aligned_cols=132 Identities=20% Similarity=0.207 Sum_probs=88.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc-
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL----VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS- 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (329)
+++.+.+|+++.+.|++.+...+...+..++.|+++||. ||||+ .+. .+... ..++.+.+...+....
T Consensus 24 ~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~----~i~--~~~~~-~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 24 FFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRP----WLL--IGAIP-FSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcch----hHH--HhHHH-HHHHHHHHHhCCCCCcc
Confidence 556688999999999999999999999999999999984 55552 221 22222 2222222222332211
Q ss_pred -hhHHHHHHHHHHHHHhhccCCCCchhHHhhhc-CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 -TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIV-PERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+...+..++.+.+.+.... +..++..|.. ++++|+...++.+...++|+.+++.+.+.+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~ 162 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNI-PYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSY 162 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-cHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344444555666665454 5677777876 467899999999999999988888877776654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=90.64 Aligned_cols=123 Identities=20% Similarity=0.223 Sum_probs=86.7
Q ss_pred HHHHHhC--CChhHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 56 YVVRTIG--FSHGLT----VFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 56 ~~~~~~g--~s~~~~----~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.+.+.+| .+..+. +...+++.+++++|+.++++++||+|||. .+. ...+...++.++..... ...
T Consensus 44 t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~-----~l~---~~~~l~~~~~~~~~~s~-~~~ 114 (485)
T KOG0569|consen 44 TLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKN-----ALL---LSNLLAVLAALLMGLSK-SAP 114 (485)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH-----HHH---HHHHHHHHHHHHHHHHH-Hhh
Confidence 4455666 444333 44556788999999999999999999997 222 22222222222221111 122
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
....+.+..++.|+..+.... ....++.|+.|++.||....+......+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~-~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTG-LVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHH-HHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 456688899999998888777 8899999999999999999999999888888876553
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.8e-09 Score=90.64 Aligned_cols=132 Identities=16% Similarity=0.135 Sum_probs=91.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|+|..+.|++.+...+...++.++.|.++||++|+. ....... +...+..+.+.. ..+ ..+.+
T Consensus 28 ~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~-----~~~~~~~--~~~~l~~~~~~~--~~~-~~~~l 97 (382)
T TIGR00902 28 PAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHII-----IALRLLA--LASAIFAAAFSA--GAH-NAWLL 97 (382)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHH--HHHHHHHHHHHH--hhh-hHHHH
Confidence 6777889999999999999999999999999999999998754 1111111 111111111111 112 23445
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+...+.+.+.+...| ...++..+. .++|+..+|......++|.+++|.+.+.+.+. .+|+.
T Consensus 98 ~~~~~l~~~~~~~~~p-~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~-~g~~~ 159 (382)
T TIGR00902 98 FIAIGLFALFFSAGMP-IGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM-FDEQN 159 (382)
T ss_pred HHHHHHHHHHHccchh-HHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH-cChhH
Confidence 5555566666666566 566665543 46689999999999999999999999999987 45554
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-08 Score=90.19 Aligned_cols=135 Identities=11% Similarity=0.027 Sum_probs=92.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-----VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-----g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
|.+.++.|.+..+.+.+.... .. .++.++.|+++||+ |||+ .++ ..+.+....+......... ..
T Consensus 36 ~~~l~~~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr-----~~l--l~~~i~~~~~~~~~a~~~~-~~ 105 (491)
T PRK11010 36 QAWMTVENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRR-----GWL--LATQLLLLVAIAAMGFLEP-GT 105 (491)
T ss_pred HHHHHhCCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCch-----HHH--HHHHHHHHHHHHHHHHcCC-cc
Confidence 777788899999999873322 22 26889999999999 8877 322 2222222222222222222 22
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
..+.+.+..++.+++.+...+ ...++..|.+|+++|+.+.++......+|..+++.+.+.+.+...+|+.
T Consensus 106 ~l~~l~~~~~l~~~~~a~~~i-~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~ 175 (491)
T PRK11010 106 QLRWLAALAVVIAFCSASQDI-VFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQG 175 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHH
Confidence 344455566667777766666 6789999999999999999999999999999999998888873234444
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-08 Score=94.41 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=96.6
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
+.+..+.....+..+.+.+|..+|.++.|.++||+|||+ ++. .+.+...+..+.... .+ .+..+.+..
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~-----~~~---~~~~~~~i~~~~~a~---a~-~~~~~~~~R 178 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKP-----VLL---VSLLLFIIFGILTAF---AP-NYWMFLIFR 178 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHH-----HHH---HHHHHHHHHHHHHHH---hC-cHHHHHHHH
Confidence 556778888889999999999999999999999999998 333 222222222222222 22 466789999
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
++.|++.+.... ....+++|++++++|+.+..+ ......++.++++..+++..
T Consensus 179 fl~G~~~~~~~~-~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 179 FLSGFFGSGPLT-VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HHHHhhccchhH-HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999988887 889999999999999999999 88888899999999888876
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-07 Score=79.92 Aligned_cols=174 Identities=13% Similarity=0.191 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCc---c-----ccCCcchhHH------HHHH----------HHHH-H
Q 041066 5 GWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSR---A-----KDQKPHKAFC------FVIF----------AYVV-R 59 (329)
Q Consensus 5 gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~---~-----~~~~~~~~~~------f~~~----------~~~~-~ 59 (329)
.||++|.+.+.+.+++++... ..|-|+.+....+ . ....++|.++ |++. +.|. +
T Consensus 187 ~v~~pYl~~~~~lvll~v~~~-~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~ 265 (422)
T COG0738 187 SVQFPYLILAGLLVLLAVLIL-LSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEE 265 (422)
T ss_pred hhhhHHHHHHHHHHHHHHHHH-hccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 488999998877655555443 3333332221111 1 1123445554 2222 5555 4
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
..|.+..+++...+.+.++.++|+.++.++..|+...| .+. +.+.+.+.+..... .. .. .....+++
T Consensus 266 ~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k-----~La--f~a~~~ill~~~~~-l~---~g--~v~~~~l~ 332 (422)
T COG0738 266 LLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEK-----YLA--FYALIAILLLLAVA-LI---GG--VVALYALF 332 (422)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-----HHH--HHHHHHHHHHHHHH-Hh---cC--hHHHHHHH
Confidence 48999999999999999999999999999999998877 322 22222222222211 11 11 23556677
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+.|++.+..+| ...+...+..| + .....|..-.+.-+|+++.|++.|++.|..
T Consensus 333 ~ig~F~simfP-TIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i~d~~ 385 (422)
T COG0738 333 LIGLFNSIMFP-TIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVIADMF 385 (422)
T ss_pred HHHHHhHHHHH-HHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHHHHhh
Confidence 88999998898 88888888888 3 344444455567789999999999999984
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3e-08 Score=89.12 Aligned_cols=130 Identities=17% Similarity=0.149 Sum_probs=87.2
Q ss_pred HHHHHHhCCChhHHHHHH-HHH-----HHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 55 AYVVRTIGFSHGLTVFLM-TLF-----TIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~-~~~-----~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
|.+.++++.+..+.+.+. +.. .+...++.++.|+++||+|||+ .+. ...+...++.+.....+...
T Consensus 39 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~-----~l~---~~~~~~~~~~~l~~~~~~~~ 110 (434)
T PRK15075 39 TAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRK-----GLI---VTLSIMASGTLLIAFVPGYA 110 (434)
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHH-----HHH---HHHHHHHHHHHHHHhCCcHH
Confidence 778888998877654332 221 2233568899999999999998 332 22222222222222222111
Q ss_pred c----hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 129 S----TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 129 ~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
. ....+.+..++.|++.+...+ ....++.|.+|+++|+.+.++.+...+++..+++.+++.+..
T Consensus 111 ~~~~~~~~~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~ 178 (434)
T PRK15075 111 TIGLAAPLLVLLGRLLQGFSAGVELG-GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQ 178 (434)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 011356677888888887666 667899999999999999999999999998888888776643
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.5e-08 Score=86.22 Aligned_cols=131 Identities=15% Similarity=0.136 Sum_probs=76.1
Q ss_pred HHHHHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTI-AGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i-~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
++.+++|.+..+.|++.+...+ +..++.+.+++ .||+|+|+ .+. ....+...+....+.. ..+ .+.+
T Consensus 41 ~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~-----~~~--~~~~~~~~~~~~~~~~---~~~-~~~l 108 (393)
T PRK15011 41 FLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRK-----SLI--VFCCLLGVLACTLFAW---NRN-YFVL 108 (393)
T ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccchh-----HHH--HHHHHHHHHHHHHHHH---hhH-HHHH
Confidence 3447899999999999776655 55555555666 99999987 322 1111111111111111 122 2222
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcch--hHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSR--TSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.+...+.+...+...| ....+..+..+++.| +...++.+...++|..++|++++.+.+. .+|+.
T Consensus 109 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~-~gw~~ 174 (393)
T PRK15011 109 LFVGVFLSSFGSTANP-QMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMG-FSFTV 174 (393)
T ss_pred HHHHHHHHHHHHhhHH-HHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh-cChHH
Confidence 2222233333333344 456666666555434 3445788888999999999999999886 45544
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-07 Score=85.94 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=80.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC------CC
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD------DP 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 128 (329)
+.+++..|.+... .......++..+++..++.++.||+|||+. ++.......++..+.......... ..
T Consensus 319 ~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l----ll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~ 393 (513)
T KOG0254|consen 319 TTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL----LLFGAAGMSICLVILAVVGVFALYYPNSSKGA 393 (513)
T ss_pred HHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH----HHHhHHHHHHHHHHHHHHHHHhccCCCcccch
Confidence 6666777776544 444556677888888888999999999983 222222233333222222222111 11
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
........++++..+..+. .+ +.|.+.+|.+|.+.|+.+.++...+..+.+.+-......+...
T Consensus 394 ~~~~~~~~~~~v~~f~~g~-g~-v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 394 GWLAIVFLCLFIFSFAIGW-GP-VPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred hHHHHHHHHHHHHHHhccc-cc-chhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1222233333333333333 45 6788999999999999999999999988876665555444444
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.3e-07 Score=82.62 Aligned_cols=121 Identities=11% Similarity=-0.022 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCchh---HHHHHHHHHHHHHHHHH-HHHhc-CCCCchhHHHHHHHHHHHHH
Q 041066 70 FLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGR---IILSQISSGSVIPIAAV-LLLVL-PDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 70 ~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~g~~ 144 (329)
.+.....+..++.+++.+++.||+++|+..... +....+...+++....+ ..... .....+.+.+....++.|++
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G 392 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG 392 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 344445566778888899999999988621111 11111111111111110 01111 11122345566778889999
Q ss_pred hhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 145 ISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
.++..+ +..+++.+..|++.+|.++|+.++..++|+.++..+....
T Consensus 393 e~~~~~-~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~ 438 (489)
T PRK10207 393 ELFISA-LGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT 438 (489)
T ss_pred HHHHhH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888 7889999999999999999999999999999998887654
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-08 Score=87.79 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=82.4
Q ss_pred CCChhHHHHHH-----HHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc----hhH
Q 041066 62 GFSHGLTVFLM-----TLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS----TGF 132 (329)
Q Consensus 62 g~s~~~~~~~~-----~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 132 (329)
+.++.. +... +...++..++.++.|+++||+|||+ .+. ...+...++.+.....+.... ...
T Consensus 56 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~-----~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (438)
T PRK09952 56 QVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKR-----MLM---LTVWMMGIATALIGLLPSFSTIGWWAPV 126 (438)
T ss_pred CCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHH-----HHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 667663 4442 2334567788899999999999998 332 222222233333322222110 012
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+.++.++.|++.+...+ ....++.|..|+++|+...+..+....+|..+++.+...+..
T Consensus 127 ~l~~~R~l~G~~~g~~~~-~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~ 186 (438)
T PRK09952 127 LLVTLRAIQGFAVGGEWG-GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISM 186 (438)
T ss_pred HHHHHHHHHHhhhcccHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778889999988777 678999999999999999999988888888888777666554
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-08 Score=90.55 Aligned_cols=129 Identities=14% Similarity=0.170 Sum_probs=88.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC---
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGD----TLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD--- 127 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~d----r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 127 (329)
+.|.+.+|.++...+++.....+..++..++.|+++| |+|||++ ++ +...+...++..++......
T Consensus 28 ~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp-----~i--l~g~~~~~~~l~ll~~~~~~~~~ 100 (477)
T TIGR01301 28 TPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRP-----FI--AAGAALVAFAVILIGFAADIGHL 100 (477)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHH-----HH--HHHHHHHHHHHHHHHhCchhhhh
Confidence 5567889999999999999999999999999999999 5999983 22 22122222222222211110
Q ss_pred -------Cc-h--hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcch--hHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 128 -------PS-T--GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSR--TSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 128 -------~~-~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
.. . .+...+.+.+..++.....+ +..+++.|..|+++| +.+.++.+...++|+.+|+.+++..
T Consensus 101 ~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~-p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~ 175 (477)
T TIGR01301 101 FGDNLDKKTKPRAIIVFVVGFWILDVANNMLQG-PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYS 175 (477)
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 12233333344455555455 578899999998765 6899999999999999999998865
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.4e-07 Score=78.99 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=106.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+.++++..+++++...+..+..++++..|++.+|+|.|+ .++.......+++.+++...... .+..+
T Consensus 37 p~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~--------gi~lgL~l~avg~~lF~pAa~~~-~y~~F 107 (422)
T COG0738 37 PHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKA--------GIVLGLLLYAVGAALFWPAASSK-SYGFF 107 (422)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHhhhhhhh-hHHHH
Confidence 8888999999999999999999999999999999999999998 33344444445555544333333 35567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+++.+.|.+..-. ..+.++..+.+++....-..+.+.+..+|++++|.+++.+..+
T Consensus 108 L~~lFila~Gi~~Let-aaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils 166 (422)
T COG0738 108 LVALFILASGIGLLET-AANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILS 166 (422)
T ss_pred HHHHHHHHhhhHHHHh-ccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 7778889999888777 7888999998888888889999999999999999999999886
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=74.81 Aligned_cols=131 Identities=16% Similarity=0.140 Sum_probs=97.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
||=-+.+|+++.++..+......+..+|....|++..| .++++ ... +++..+......+..... .. ..+.
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~-----~a~--~G~~~~~~~f~lii~a~~-~~-~~~~ 303 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKR-----TAA--LGCLLGALAFALIILAGP-LG-SPWL 303 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchH-----HHH--HHHHHHHHHHHHHHHHHh-cc-cchH
Confidence 66668899999999999999999999999999988763 44443 221 233333222222211111 11 2445
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+....+++|++.|.... ...+.+.+...+++.|...|.....+.+...++..++|.+.|..
T Consensus 304 ~~~~~~l~G~g~G~f~v-gals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 304 FRPGVFLLGLGNGLFTV-GALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred HHHHHHHHHHhhhHHHH-HHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888988888766 67788889988899999999999999999999999999999874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.9e-08 Score=85.24 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=84.0
Q ss_pred HHHHHHhC--CChhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041066 55 AYVVRTIG--FSHGLTVFLMTL-----FTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD 127 (329)
Q Consensus 55 ~~~~~~~g--~s~~~~~~~~~~-----~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (329)
+++.+++. .+..+.+...+. ..++..++.++.|+++||+|||+ .+. ...+...++.+.....+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~ 88 (394)
T TIGR00883 17 VLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKK-----TLV---ITLLMMGIGTLLIGLLPSY 88 (394)
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHH-----HHH---HHHHHHHHHHHHHhhCCCh
Confidence 44444433 334555544432 23344568899999999999998 332 2222222333322222211
Q ss_pred Cc----hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 128 PS----TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 128 ~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.. ....+.+..++.|++.+...+ ...+++.|..++++|+...++.+....+|..+++.+.+.+..
T Consensus 89 ~~~~~~~~~~~~~~r~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~ 157 (394)
T TIGR00883 89 ATIGIWAPILLLLARLIQGFSLGGEWG-GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSY 157 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccc-ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 10 012456667788888887777 778899999999999999999999999999999888776544
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.2e-07 Score=81.00 Aligned_cols=126 Identities=10% Similarity=0.067 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC---chhHHHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHH
Q 041066 68 TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPN---SGRIILSQISSGSVIPIAAVLLLVLP-DDPSTGFMHGLVLVIMGL 143 (329)
Q Consensus 68 ~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 143 (329)
.+++.+...+..++..++..++..|+.||... ..++....+...+++....+...... ....+.+.+.+..++.++
T Consensus 314 ~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ 393 (475)
T TIGR00924 314 VIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTL 393 (475)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHH
Confidence 66788888888888887776666666664211 11112212222222211111111111 112345667788889999
Q ss_pred HhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 144 CISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+.....| ...+++.+..|++.||+.+|+......+|..+++.+.+...+.
T Consensus 394 ge~~~~p-~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 394 GELMISP-LGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999888 8999999999999999999999999999999988887765543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.9e-08 Score=88.02 Aligned_cols=130 Identities=19% Similarity=0.207 Sum_probs=84.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+++.+++|-+ ....++.+...++..++.++.|+++|.+|||. .. +...+..+++.+...... ....+
T Consensus 68 ~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~-----~~---i~g~~l~vvG~Iv~atA~----~~~~~ 134 (599)
T PF06609_consen 68 PYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY-----FF---IIGSLLGVVGSIVCATAQ----NMNTF 134 (599)
T ss_pred HHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchH-----HH---HHHHHHHHhHHHHhhcCC----cHHHH
Confidence 5555778865 56677778888999999999999999999998 32 233333333333332222 23446
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.....+.|++.+.... ....++|+.|.+.|+.+.++.....-+....++.+...+... .+|++
T Consensus 135 iag~~l~GvgaG~~~~--~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~-~~WRw 197 (599)
T PF06609_consen 135 IAGMVLYGVGAGVQEL--AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH-SGWRW 197 (599)
T ss_pred HHHHHHHHHhhHHHHH--HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC-CCcch
Confidence 7777777887766443 566689999999998887776654444444556665444333 45555
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-06 Score=75.13 Aligned_cols=120 Identities=12% Similarity=0.203 Sum_probs=83.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
.+....|++.+...+..++...+..++.+|+|.|+ .+ +....++.+=...... .++ .+.+.+.-.+-+
T Consensus 256 ~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~-----~L---llag~i~~iRi~~~~~---~~~-~~~i~~~klLH~ 323 (412)
T PF01306_consen 256 QGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN-----LL---LLAGVIMAIRIIGSGF---ATN-PWVISLIKLLHA 323 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----HH---HHHHHHHHHHHHHHHT-----S-HHHHHHHHHHHH
T ss_pred cChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-----HH---HHHHHHHHHHHHHHhh---hcc-hHHHHHHHHHHH
Confidence 34566788888888999999999999999999998 22 2333333333333322 222 334555555666
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHH-HHHHHHHhhhHHHHHHHHhhhh
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALD-RSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+-...... ...-++++.+|++..++.+.+. ++..+++.++.+.+.|.+.|+.
T Consensus 324 ~e~~l~lv-a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~ 376 (412)
T PF01306_consen 324 LEFPLLLV-AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI 376 (412)
T ss_dssp HHHHHHHH-HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc
Confidence 65555444 5678899999999989999885 6777889999999999999985
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=86.29 Aligned_cols=112 Identities=16% Similarity=0.273 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhh
Q 041066 67 LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS 146 (329)
Q Consensus 67 ~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 146 (329)
+.+++.+...++..++.++.|+++|++|||+ .++...+...++.++..... ....+.+..++.|++.|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~--------~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G 157 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRIGRKK--------TLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVG 157 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchh
Confidence 4489999999999999999999999999998 22333333434444433322 45678899999999999
Q ss_pred ccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
.... +...+.+|+.|++.||...++.+....+|..++ .+.+...
T Consensus 158 ~~~~-~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~ 201 (513)
T KOG0254|consen 158 GASV-LAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT 201 (513)
T ss_pred hhhh-cchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence 8887 889999999999999999999999988776666 4444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.9e-08 Score=86.71 Aligned_cols=121 Identities=14% Similarity=0.028 Sum_probs=94.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHH-HHHHHHHhcCCCCchhHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIP-IAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
++.++...+.+.+.+.+.++.+++.++++.+.||+...+ .+. ...++-. ++++... ..+.+.+.+.
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~-----~l~---~~~~~w~~~~~~~~~-----~~s~~~~ial 140 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK-----GLS---VSGILWGLFGFLTAA-----VHSFPGLIAL 140 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH-----HHH---HHHHHHHHHHHHHHH-----HhhhHHHHHH
Confidence 456677788999999999999999999999999999554 221 2111111 1111111 1134558889
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.++.|++.+...| ....++...+.+++||..+|+.+...++|+++|+.+...+..
T Consensus 141 r~llGl~es~~wP-~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 141 RFLLGLFESGGWP-GVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHhcccch-HHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 9999999999999 889999999999999999999999999999999999877654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-08 Score=87.88 Aligned_cols=108 Identities=16% Similarity=0.087 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCC-CCchhH
Q 041066 78 AGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAP-TTNNPI 156 (329)
Q Consensus 78 ~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 156 (329)
+.+.|..+...++|++||++ +-+ .....+.+..+.+....+.........++..+..+ .+-..| .....+
T Consensus 360 ~~vPGyw~tv~~id~iGRk~-----iq~---~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~f-f~NFGPn~ttfiv 430 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDIIGRKY-----IQL---MGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFF-FGNFGPNATTFIV 430 (538)
T ss_pred ccCCceeEEEEEeehhhhHH-----HHH---hhHHHHHHHHHHHcCCcccccccCceeehHHHHHH-HHhcCCCceeEEe
Confidence 33446677788999999997 222 22222222222221111101111112222222222 222233 256778
Q ss_pred HhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 157 FAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 157 ~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+|.+|.+.||+..|+..+.+.+|++++......+.++
T Consensus 431 paE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~ 468 (538)
T KOG0252|consen 431 PAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDH 468 (538)
T ss_pred ehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhc
Confidence 89999999999999999999999999999999888875
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-07 Score=84.92 Aligned_cols=132 Identities=17% Similarity=0.131 Sum_probs=98.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.+.++++.+..+++++.++......+..++.+.+.||+|.|. .. +...+....++++. ....+.+.++
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~-----v~---i~G~~v~~~g~~ls---sF~~~i~~l~ 138 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT-----VM---IAGGLVAALGLLLS---SFATSLWQLY 138 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH-----HH---HHHHHHHHHHHHHH---HHHhhHHHHH
Confidence 6777899999999999999999999999999999999999997 22 22222222222222 2233334455
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
...-++.|+|.++... +..+++...++ ++|+.++|+......+|..+-|.+...+.+. .+|+.
T Consensus 139 lt~gvi~G~G~~~~~~-paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~-~G~r~ 201 (509)
T KOG2504|consen 139 LTFGVIGGLGLGLIYL-PAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSK-YGWRG 201 (509)
T ss_pred HHHHHHhhccchhhhc-chhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHH-hCcHH
Confidence 5666777888888777 66777777765 5599999999999999999999999999988 45555
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-06 Score=78.80 Aligned_cols=120 Identities=11% Similarity=-0.058 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc-CCCCchhHHHHHHHHHHHHHhh
Q 041066 68 TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL-PDDPSTGFMHGLVLVIMGLCIS 146 (329)
Q Consensus 68 ~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~ 146 (329)
.+++.+...+..++..++.+++-+|.++|.....++....+...++........... .....+.+......++.+++..
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 566666777777888888877777777664332222222222222221111111100 0111224457778888999999
Q ss_pred ccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
...| ...+++.+..|++.||..+|+......+|+.++..+.
T Consensus 398 ~~~p-~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 398 MISG-LGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHhH-HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888 8899999999999999999977766655555554444
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.1e-07 Score=81.57 Aligned_cols=132 Identities=14% Similarity=0.165 Sum_probs=86.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc-
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT----LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS- 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (329)
.||.+.+|+++...|.++++..+...+..++.|+++|| +|||++ ++ +...+...++..+++..+..+.
T Consensus 31 ~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp-----~i--l~g~i~~~i~~~llf~~p~~~~~ 103 (473)
T PRK10429 31 YYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKP-----WI--LIGTLANSVVLFLLFSAHLFEGT 103 (473)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcch-----hH--hhhhHHHHHHHHHHHcCCCCCcc
Confidence 45557889999999999999999999999999999995 588764 21 2222222233223332222111
Q ss_pred -hhHHHHHHHHHHHHHhhccCCCCchhHHhhhc-CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 -TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIV-PERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+.+.+..++.+++...... +..++..|+. ++++|...++......++|+.+++.+...+.+.
T Consensus 104 ~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 104 AQYVFVCVTYILWGMTYTIMDI-PFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-hHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122233333444555555555 6788889987 578899999988888888877776665555443
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=80.21 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=87.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH--hcCCCC-chhHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL--VLPDDP-STGFMHGLVLV 139 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 139 (329)
+++...+.+.+...++.++|+++.||+.||+|||+. +. ...+.++++.++.. .....+ .-...+....+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~v-----YG---~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~ 152 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKV-----YG---KELIIMIICSALSGLSVGTTSPLGVMMTLCFFRF 152 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh-----hh---HHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHH
Confidence 566778888889999999999999999999999983 32 11111112211111 111222 23566788889
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
++|+|.|.=.| ...++++|..-.+.||.-.++...++.+|...|..+.-.+.
T Consensus 153 ~LGiGIGGDYP-lSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~ 204 (538)
T KOG0252|consen 153 LLGIGIGGDYP-LSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVS 204 (538)
T ss_pred HhhccccCCCc-chHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHH
Confidence 99999999999 89999999998899999998888888777666655544433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-07 Score=80.95 Aligned_cols=137 Identities=15% Similarity=0.028 Sum_probs=79.0
Q ss_pred HHHHHHhCCChhHHHHHH--HHHHHHHHHHHHHH-HHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 041066 55 AYVVRTIGFSHGLTVFLM--TLFTIAGSLGGLFG-GWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTG 131 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~--~~~~i~~~v~~~~~-g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (329)
|.++++.|+|..+.|++. ....+..++..++. ++..||+|||+ .++ +...+........+..........
T Consensus 25 p~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~-----~~i--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (390)
T TIGR02718 25 PTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRR-----SWV--LPMQCLVSACLASLALVGPDVAGA 97 (390)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcch-----hHH--HHHHHHHHHHHHHHHcCCcchhhH
Confidence 888899999999999973 55677787788777 55789999888 322 111111111111111111111112
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.......++.+++.....+ ....+..|..+++.++...+.......+|..+++...+.+.+. .+|+.
T Consensus 98 ~~~~~~~~~~~~~~a~~d~-~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~-~gw~~ 164 (390)
T TIGR02718 98 GWAVGLLACASLASATQDI-ATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGK-FGQRP 164 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHH
Confidence 2222333333344433333 3445566666666667777777777777888888777777776 34443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-07 Score=81.40 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=85.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC--
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT----LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP-- 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 128 (329)
+||.+.+|+++..+|.++++..+...+..++.|+++|| +|||++ .+ +...+...+...+.+..+...
T Consensus 34 ~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp----~i---l~~~~~~~i~~~l~f~~p~~~~~ 106 (444)
T PRK09669 34 YFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP----YL---LWFAIPFGVVCLLTFYTPDFGAT 106 (444)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch----hH---HHHHHHHHHHHHHHHhCCCCCcc
Confidence 55668999999999999999999999999999999999 555553 22 122222222222222233211
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhc-CCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIV-PERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+...+..++.+.+...... +..++..|+. ++++|+...+......++|+.+++.+...+...
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~i-p~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~ 172 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINV-PYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDI 172 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc-hHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233333344444444444 4678888876 447799999999999999988888776655554
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=75.67 Aligned_cols=132 Identities=20% Similarity=0.279 Sum_probs=93.2
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hccCCchhHHHHHHHHHHHHHHHHHHHHhcCC------
Q 041066 58 VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLV-----KRLPNSGRIILSQISSGSVIPIAAVLLLVLPD------ 126 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 126 (329)
..+++++....+.+.+...+... .++..|+.+|+.+ ||.++ ++........+..+..........
T Consensus 7 IvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPy---I~~G~~~~~~g~~~ap~a~~~l~~~~~~~~ 82 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPY---IWGGTLLQAGGLAIAPFALLLLAESGQQSS 82 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhh---hHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence 46789998888888877766544 5899999999988 77765 333322222222222222222222
Q ss_pred CCc--hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 127 DPS--TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 127 ~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+. ......+.+.+.|++...... ...+++.|..|+++|+.+.++...+.-+|..++..+.|.+++.
T Consensus 83 ~~~~~g~~~a~l~F~l~G~G~~~s~T-~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~ 151 (403)
T PF03209_consen 83 GPFWLGLALAALAFLLYGLGVHASGT-SFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDP 151 (403)
T ss_pred cccHHHHHHHHHHHHHHHhhHhHhHH-HHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 112 223455666777888877776 7889999999999999999999999999999999999988876
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.8e-07 Score=77.71 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=90.9
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
.-|++...+|+......++++++++++|.+.||.++-+ .... +...... .+...+..........+++.....
T Consensus 295 ~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk-----~~~~-v~~~~~~-v~~~~l~~~t~~~~~~viv~~t~~ 367 (480)
T KOG2563|consen 295 PSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK-----LTTL-VLYLFAL-VGTLMLLTCTLFLGDSVIVFTTCG 367 (480)
T ss_pred cccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH-----HHHH-HHHHHHH-HHHHHHHHhhccCCceEehhhhHH
Confidence 45788889999999999999999999999999987665 2211 1111111 221222222222223344566667
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
++|++.....| +..-+..|..-|..-++.+|+.++.+++.+.+-..+.+...+..+
T Consensus 368 ~~g~~~~~~~P-ig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 368 LLGFFGTGYLP-IGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred HHHHhhcCCCC-cceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 77777777777 788888887666778999999999999999998888888887644
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-08 Score=88.56 Aligned_cols=133 Identities=17% Similarity=0.258 Sum_probs=93.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc-CCCCc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGD----TLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL-PDDPS 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~d----r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 129 (329)
++|.+..|+++...|++.....+...+..++.|+++| |+|||++. + +...+...++..+++.. +....
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~---~----l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPW---I----LIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceE---e----ehhhHHHHHHHHHhhccccchhh
Confidence 6677889999999999999999999999999999999 78888853 1 12222222333333322 21111
Q ss_pred ---hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcC-CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 130 ---TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVP-ERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 130 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
....+.+..++..++...... +..++..|+.+ +++|....+.......+|+.+...+.+.+.+..
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i-~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~ 167 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQI-PYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWF 167 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccC-chhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 122234444555666666555 67888899886 468999999999999999887888877777653
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=77.52 Aligned_cols=132 Identities=12% Similarity=0.100 Sum_probs=89.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC-c
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT----LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP-S 129 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr----~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 129 (329)
.+|.+..|+++..+|.++.+.-+...+.-|+.|+++|| +|||++ .+ +...+...+..++++..+... .
T Consensus 34 ~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp----~i---l~g~i~~~i~~~llf~~p~~s~~ 106 (460)
T PRK11462 34 FFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRP----WV---LFGALPFGIVCVLAYSTPDLSMN 106 (460)
T ss_pred HHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcch----hH---hHHHHHHHHHHHHHHhCCCCCcc
Confidence 45668899999999999999999999999999999997 466653 22 222222223333333333211 1
Q ss_pred h-hHHHHHHHHHHHHHhhccCCCCchhHHhhhcC-CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 T-GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVP-ERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 ~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
. ...+.+..++...+...... +..++..|+.+ +++|++.++......++|+.+++.+...+...
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~i-py~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~ 172 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNI-PYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNL 172 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22233344444555555454 57888888876 67899999999999999988888887666554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.8e-06 Score=76.77 Aligned_cols=124 Identities=16% Similarity=0.239 Sum_probs=71.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCc-hhH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPS-TGF 132 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~ 132 (329)
+|+.+..|+++.++|.+.++..+...+..++.|+++||.++|+.++...+. .+.......+.+.+..... ... ..+
T Consensus 33 ~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 33 SYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLL--FGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHH--HHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 455577899999999999999999999999999999997544322111211 2222222222222222111 111 122
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCC-cchhHHHHHHHHHHHHHh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPE-RSRTSIYALDRSFESILA 181 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~g~ 181 (329)
...+..++.+++.+...+ +..++..++..+ ++|...++.-....++++
T Consensus 111 ~~~~~~~~~~~~~~~~~~-~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~ 159 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNI-PYGSLATAMTQQPQSRARLGAARGIAASLTF 159 (448)
T ss_pred HHHHHHHHHHHHHHHhcc-cHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 233344555666666565 556666665543 567777666655444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.9e-06 Score=79.59 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=37.1
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQHV 195 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~~ 195 (329)
+...++...+|+++|..+.|+..++..+ |..-+|.+.|.++|..
T Consensus 538 p~~~i~lR~V~~~~rs~alg~~~~~~rllg~iP~pi~fG~~iD~s 582 (633)
T TIGR00805 538 PLYMVLLRVVNPEEKSLAIGLQWLCMRVFATIPAPILFGLLIDVS 582 (633)
T ss_pred chheEEeeccCcccchHHhhHHHHHHHHhcCCChhHHHhhhhhch
Confidence 4566677788999999999999887775 5599999999999974
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.9e-06 Score=72.61 Aligned_cols=131 Identities=17% Similarity=0.081 Sum_probs=99.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
+.+.+++|+|.+.+|++++...++..+.+++..++.+|+|..+ .+....+.+..+...=.. . ....+
T Consensus 36 ~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er--------~l~~~Llli~~G~~iR~~---~--~~~~L 102 (395)
T COG2807 36 DEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEER--------SLFLALLLIAAGILIRSL---G--GLPLL 102 (395)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHH--------HHHHHHHHHHHHHHHHhc---c--cHHHH
Confidence 4455789999999999999999999999999999999999887 222333333232222211 1 23446
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.....+.|.+.+.... .....+.+-+|++ .+..+|++++..++++++++.+...+.++.++|+.
T Consensus 103 ~~gt~l~G~gIav~nV-LLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~ 166 (395)
T COG2807 103 FLGTLLAGAGIAVINV-LLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG 166 (395)
T ss_pred HHHHHHHHhhHHHHHH-hhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence 6666777777777666 7888999998765 89999999999999999999998888877544554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.2e-06 Score=68.89 Aligned_cols=122 Identities=17% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
+.+|++..+.+.++........+...+.|.++||+|||+ .. +...+....+++. ...+ ....+.+..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~-----~c---l~~cily~~scl~----k~~~-~~~~L~~GR 128 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKK-----AC---LLFCILYSLSCLT----KHSS-NYPVLLLGR 128 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH-----HH---HHHHHHHHHHHHH----Hhcc-ccHHHHHHH
Confidence 679999999999999999999999999999999999998 21 2222222222221 1122 356688888
Q ss_pred HHHHHHhhccCCCCc-hhHHhhh----cCCcchhHHHHHHHHHHH-HHhhhHHHHHHHHhhh
Q 041066 139 VIMGLCISWNAPTTN-NPIFAEI----VPERSRTSIYALDRSFES-ILASFAPPVVGLLAQH 194 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~-~~~~~~~----~~~~~~g~~~~~~~~~~~-~g~~~~~~~~g~l~~~ 194 (329)
++.|++...... .. .-++.|. +|++..+...+...+..| +.++++..+..++.+.
T Consensus 129 vlgGiaTSLLfS-~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~ 189 (354)
T PF05631_consen 129 VLGGIATSLLFS-AFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADW 189 (354)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHH
Confidence 888988877655 22 3455554 344444444554443333 2333344444455554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=4e-06 Score=68.45 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=84.8
Q ss_pred HHHH-HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC--
Q 041066 51 FVIF-AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD-- 127 (329)
Q Consensus 51 f~~~-~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 127 (329)
|..+ |.+.+.+|+|.++...+.....++..+| ++.|.+.|++|++. .+. ++.......-...+......
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~-----~l~--iG~~~~~~GY~~~~l~~~~~i~ 92 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWV-----VLL--IGAVLGFVGYGLLWLAVSGRIP 92 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHH-----HHH--HHHHHHHHHHHHHHHHHhCccC
Confidence 3444 7777899999999999999999988775 88899999999875 222 23333222222222222211
Q ss_pred CchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 128 PSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 128 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
..+.+.+.+..++.+.+..+... .......+.+|. +||++.|+.-....+++++-..+...+.
T Consensus 93 ~~~~~~~~~~~~l~~~s~~~~~t-a~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f 155 (250)
T PF06813_consen 93 SLPVWLMCLFLFLGGNSSCWFNT-ASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFF 155 (250)
T ss_pred ccchHHHHHHHHHHcccHHHhhh-HHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence 13445555555555566555444 233334456674 6999999999999888877776655444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.51 E-value=9.4e-10 Score=99.31 Aligned_cols=116 Identities=21% Similarity=0.249 Sum_probs=85.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 041066 64 SHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGL 143 (329)
Q Consensus 64 s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 143 (329)
+....++..+...++.++|+++.|+++||+|||+. + ....+...++.++....+.. ...+.+.+..++.|+
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~-----~---~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~ 114 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPA-----L---IISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGF 114 (451)
T ss_pred hHHHHHHHHHHHHhhhccccccccccccccccccc-----c---cccccccccccccccccccc-ccccccccccccccc
Confidence 34567888889999999999999999999999982 2 22222222322222222211 134567888899999
Q ss_pred HhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHH
Q 041066 144 CISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVG 189 (329)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g 189 (329)
+.|...+ ....++.|..|++.|+...++.+....+|..++..+.-
T Consensus 115 ~~g~~~~-~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~ 159 (451)
T PF00083_consen 115 GIGGAYV-VSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGY 159 (451)
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence 9998887 88999999999999999999999888888777766643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=75.49 Aligned_cols=128 Identities=14% Similarity=0.160 Sum_probs=93.3
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc-hh
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVK-RLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS-TG 131 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 131 (329)
||..+ +.+-+.+..|+..+...++..+++++.|+...|.++ |+| ++. +.++.+ ++.+++......+. ..
T Consensus 59 pYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P----li~---s~ii~~-~g~llY~~l~~~~~~~~ 130 (488)
T KOG2325|consen 59 PYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP----LIV---SFLIAI-IGNLLYLALAYVPNGVK 130 (488)
T ss_pred hhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC----HHH---HHHHHH-HHHHHHHHHHhcccchH
Confidence 77663 578888999999999999999999999999999884 332 333 222222 33333322222232 56
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
++++++.++.|++.+... ..-+++++..-.++|.++.+..+..+.+|..+||.+...+.
T Consensus 131 y~mL~~R~l~Gvg~~n~a--~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~ 189 (488)
T KOG2325|consen 131 YLMLVARILTGVGVGNFA--VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFT 189 (488)
T ss_pred HHHHHHHHHcCcCcccHH--HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence 778889999999887643 47888998777788999999998888888888888765544
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.4e-05 Score=74.83 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=90.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC----Cch
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD----PST 130 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 130 (329)
|+.+.+|++...+..+...+....-+..+++|+++|+ +|+++ .+ ....+...++..++...... ...
T Consensus 13 Yl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~-----tI---l~~~ii~~lG~~llai~a~~~~~~~~~ 84 (654)
T TIGR00926 13 YFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFK-----TI---LYLSIVYVVGHALLSFGAIPSSGHPLH 84 (654)
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----HH---HHHHHHHHHHHHHHHhccCcccccchH
Confidence 4457789999999888888888888889999999997 67666 22 22222222222222221111 111
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCc---chhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPER---SRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
.....+.+.++++|.+..-| ...+...|.++++ .+-..+.++.+..|+|+.+++.+.+++.+..
T Consensus 85 ~~~~l~gLaLia~G~GgiKp-~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~ 151 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKP-CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDV 151 (654)
T ss_pred HHHHHHHHHHHHhhcccccc-CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23355667777888888777 7888888888653 3677889999999999999999999887553
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.5e-07 Score=75.84 Aligned_cols=187 Identities=14% Similarity=0.096 Sum_probs=108.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCccc-----cCCcchhHH------------HHHH----HHHH-H
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKSRAK-----DQKPHKAFC------------FVIF----AYVV-R 59 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~~~~-----~~~~~~~~~------------f~~~----~~~~-~ 59 (329)
+..|.+.+|++++++.++-..+.++.++. .+...+...+ +.++.+.++ +.+. +.++ +
T Consensus 221 e~~Gk~aPFlVL~~v~Lld~~L~l~vi~p-~~~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e 299 (464)
T KOG3764|consen 221 EFAGKSAPFLVLAIVLLLDGALQLLVIEP-TEMDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLE 299 (464)
T ss_pred hhcCCcCcHHHHHHHHHHHHHHHHheeCc-cccCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHH
Confidence 46789999999999977777666666553 2222211111 111222222 1122 4544 6
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
.+.-+.-+.|+.+.+..+...+++.+.|.+.||++.-+ .... +..++.. .+.....+.... +..+++...
T Consensus 300 ~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~-----wl~~-~~gl~~~---G~~~~~iP~~~~-~~~L~vp~~ 369 (464)
T KOG3764|consen 300 TMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLR-----WLLS-LGGLATV---GVSSGPIPFATS-IAQLWVPNF 369 (464)
T ss_pred hccCCCcceeeeecccccchhccCchHHHHHHhcCchh-----HHHH-HHHHHHH---HHHhchhHhhhh-HHHHhhhhH
Confidence 77755559999999999999999999999999999544 1111 1111111 111111222222 222333334
Q ss_pred HHHHHhhccCCC--CchhHHhhhcCCc---chhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 140 IMGLCISWNAPT--TNNPIFAEIVPER---SRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 140 ~~g~~~~~~~~~--~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
..+++.+....+ +...+..|.-..+ ..|.++++......+|.++||.++|.+.+. .++.+
T Consensus 370 ~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~-iGF~w 434 (464)
T KOG3764|consen 370 GLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEA-IGFEW 434 (464)
T ss_pred HHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheee-hhHHH
Confidence 444443332220 1233333332333 578999999999999999999999999887 34444
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.44 E-value=3e-07 Score=80.17 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=73.3
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCchhH
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPSTGF 132 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 132 (329)
|.+++ ..|+|.++.|.+++...+..++..++.|.++||+|.|| -++..+............+...+. ..+
T Consensus 31 ~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK-----~Ll~~i~~l~~l~~pff~~v~~pll~~n--- 102 (412)
T PF01306_consen 31 PIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKK-----HLLWFIAILLLLFGPFFIYVFGPLLQSN--- 102 (412)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCS-----HHHHHHHHHHHTCHHHHHHTHHHHHHTT---
T ss_pred HHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 55564 58999999999999999999999999999999999887 222112211111111111111110 011
Q ss_pred HHHHHHHHHHHHhhccCCC---CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 133 MHGLVLVIMGLCISWNAPT---TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+..++.++..+....+ +.-+++.+. .++.+.-+|=..+.+++|.++++.++|.+.+.
T Consensus 103 -~~lg~iig~i~l~~~f~~~~~~~Ea~~er~--sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i 164 (412)
T PF01306_consen 103 -FWLGAIIGGIYLGLVFNAGVPLSEAYAERV--SRRNGFEYGRARMWGSIGFAIASLLAGILFNI 164 (412)
T ss_dssp --HHHHHHTTTTTTTTTTTHHHHHHHHHHHH--HHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHcccchHHHHHHHHH--HHHhcCCcchHHHHhhHHHHHHHHHhheeeee
Confidence 112222223333332220 222222222 24466778888899999999999999999875
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.9e-06 Score=76.95 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=38.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
+++.++.|++..+.|++.+...++.+++.++.|+++||+|+||
T Consensus 27 ~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r 69 (418)
T TIGR00889 27 SYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQ 69 (418)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Confidence 3444778999999999999999999999999999999997644
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.1e-05 Score=71.37 Aligned_cols=137 Identities=17% Similarity=0.181 Sum_probs=96.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCC--CchhHH
Q 041066 56 YVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDD--PSTGFM 133 (329)
Q Consensus 56 ~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 133 (329)
+|.+..|+++..+|.++.+.-+..++.-|+.|.++||..+|+.+ ....++...+...+...+.+..++. ......
T Consensus 38 fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Gr---fRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~y 114 (467)
T COG2211 38 FYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGR---FRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIY 114 (467)
T ss_pred HHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeeccccccccc---ccHHHHHHhHHHHHHHHHHHcCCCcccCcchHH
Confidence 45588999999999999999999999999999999975544432 1112223333333333333333321 223445
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcC-CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVP-ERSRTSIYALDRSFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
..+..++.+++...... +..++..++.+ +++|.+..+.-..+.++|+.+...+.+.+....+
T Consensus 115 a~vtY~l~~l~YT~vni-Py~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 115 ALVTYMLLGLGYTLVNI-PYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred HHHHHHHHHHHHHheeC-chhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 66666777888777665 67777777753 5779999999999999999988888888887743
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.41 E-value=8.6e-05 Score=66.88 Aligned_cols=64 Identities=9% Similarity=-0.050 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCC--cchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPE--RSRTSIYALDRSFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
+...+.+...|+..+.... +-++++++..++ +..|..+|+.|.+..+...+.....|.+.+..+
T Consensus 381 ~~~l~~~~~~Gi~~A~~~s-iPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g 446 (477)
T TIGR01301 381 ASALIVFAILGIPLAITYS-IPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFG 446 (477)
T ss_pred HHHHHHHHHhhHHHHHHHH-HhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455666667776666555 568999998884 456999999999999999998888888555543
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-06 Score=69.75 Aligned_cols=125 Identities=17% Similarity=0.150 Sum_probs=86.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|-.....|.+..+..++......+..+++...|.++|++|||+.. ....+......+ ....++ +...+
T Consensus 102 ~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f--------~~T~l~t~v~~~---is~~sp-nf~~L 169 (528)
T KOG0253|consen 102 PALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGF--------NLTFLVTGVFGV---ISGASP-NFASL 169 (528)
T ss_pred HHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhh--------hhhHHHHHHHHH---hhcCCC-Ceehh
Confidence 444456788888999999999999999999999999999999831 122221111111 122223 24446
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+...+.|++.|. .| ...++-.|..|..+|+.-+-+. +...+|..+...+.=.+..+
T Consensus 170 ~~f~~l~~~g~gg-~p-v~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~ 226 (528)
T KOG0253|consen 170 CVFRALWGFGVGG-LP-VDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSN 226 (528)
T ss_pred hHHHHHHhccCCC-cc-HhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHh
Confidence 6777788888887 66 7788888999988888777666 66777776666665444444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.7e-10 Score=99.88 Aligned_cols=130 Identities=17% Similarity=0.214 Sum_probs=76.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH---HHhcCCCC---
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL---LLVLPDDP--- 128 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--- 128 (329)
|.+.+..|.+.. -.......+...++.+++.+++||+|||+. .. .+..+........ .......+
T Consensus 277 ~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-----~i--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 277 PSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-----LI--IGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred cccccccccccc--cccccccccccccccccccccccccccccc-----cc--ccccccccccccccccccccccccccc
Confidence 555566676665 222334456677777888899999999973 22 1111111111111 11111111
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..............+..+. .+ ..+.+..|++|.+.|+++.|+....+++++++++.+...+.+..
T Consensus 348 ~~~~i~~~~l~~~~~~~g~-~~-~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~ 412 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGW-GP-LPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL 412 (451)
T ss_pred ccccceeeeeccccccccc-cc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 1111111111122222222 34 66788899999999999999999999999999999887777663
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.7e-05 Score=71.95 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=82.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchh
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLV---KRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTG 131 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (329)
|++.+++|+++.+.+.+.+...+...+- ++.|.++||++ +||. .++ ++...+.... .+......++..
T Consensus 50 ~~l~~~lg~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr----~~l-~~~~~l~~~~---~~~~l~~~~~~~ 120 (468)
T TIGR00788 50 PMLTDDLGLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKR----WYL-VLSGLLGSAI---LYGLLPGKVSSA 120 (468)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccch----HHH-HHHHHHHHHH---HHHhcccccchH
Confidence 4444679999999988888888877774 55999999995 2221 111 1222222111 111122222223
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHH---HHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSI---YALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
....+.+++.+++.+..-. ..-.+..|..+ +.++.. .++.....++|..+++.+.|.+.+. .+|..
T Consensus 121 ~~~~~~~~l~~~~~a~~dv-~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~-~~~~~ 189 (468)
T TIGR00788 121 KVAAAFIFLAALAKALYDV-LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDK-TLTRI 189 (468)
T ss_pred HHHHHHHHHHHHHHHHHHH-hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHh-cCcch
Confidence 3334466677777776666 67888888877 444443 3444455568999999999999887 34544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.7e-05 Score=72.24 Aligned_cols=44 Identities=11% Similarity=0.125 Sum_probs=37.4
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQHV 195 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~~ 195 (329)
+...++...+++++|..+.|+..++..+ |.+-+|.+.|+++|..
T Consensus 606 p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~~ID~t 650 (735)
T KOG3626|consen 606 PGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGAVIDTT 650 (735)
T ss_pred cceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhhhHhhH
Confidence 5677777888999999999999887775 5589999999999974
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.7e-05 Score=70.19 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=75.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.|++..|+|..+.|.+.+...+..+++.++.|+++||.++++. ++. +...++.+.. .... .... .+.+
T Consensus 26 ~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~----~l~--~~~l~~~~~~-~~~~---~~~~-f~~~ 94 (400)
T PF03825_consen 26 PLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKR----ILA--LLSLLSALAL-LLLA---FSSS-FWWL 94 (400)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHH----HHH--HHHHHHHHHH-HHHH---Hhcc-HHHH
Confidence 55778899999999999999999999999999999999876541 221 1111111111 1111 1222 2334
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHH
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPV 187 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 187 (329)
..++++..++.....| ...++..+... .++.-+|-....+.+|-+++...
T Consensus 95 ~~~~~l~~~~~~p~~p-l~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 95 FVIMLLFSFFFSPTMP-LSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred HHHHHHHHHHHccHHH-HHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 4445555555555555 66666666654 35667777777777777666554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.5e-05 Score=68.54 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCc
Q 041066 74 LFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTN 153 (329)
Q Consensus 74 ~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 153 (329)
..+.....+....+...|++|||. .. ....+...++.+........... +...+...+..++.+.... ..
T Consensus 358 ~~~~~~~p~~~~~~~~~~~~gR~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~ 427 (521)
T KOG0255|consen 358 LSGLVELPAYFRNGLLLPEFGRRP-----PL---FLSLFLAGIGLLLFGWLPDDLGG-WLHWILPLLGKFFIGSAFN-LI 427 (521)
T ss_pred HHHHHHhhHHHHHHHHHHHhCcHH-----HH---HHHHHHHHHHHHHHHHhhccchh-HHHHHHHHHHHHHHHHHHH-HH
Confidence 334456666677789999998887 22 23333333333333333333221 1122222222222232233 45
Q ss_pred hhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 154 NPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 154 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
..+..|.+|...|..+.+..+....++++++|.+.-...
T Consensus 428 ~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~ 466 (521)
T KOG0255|consen 428 FLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLR 466 (521)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999998864443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.2e-06 Score=72.27 Aligned_cols=125 Identities=9% Similarity=0.000 Sum_probs=91.1
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 58 VRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 58 ~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
+++.|-.+...|...+.-..+-++.-++.+++.+|+|+-+ ++. ..+.+...=++.+.. .. .+|.....
T Consensus 398 led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~-----v~~---lgLa~~~~Rf~~~S~---L~-n~W~vLPi 465 (618)
T KOG3762|consen 398 LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVN-----VMY---LGLACNVGRFLYYSY---LQ-NPWMVLPI 465 (618)
T ss_pred HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccc-----eee---ehhhHHHHHHHHHHH---hc-CchheeeH
Confidence 3778878888887777778888899999999999999887 222 222222222222222 22 23456666
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHH-HHhhhHHHHHHHHhhhh
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFES-ILASFAPPVVGLLAQHV 195 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~g~l~~~~ 195 (329)
=++.|+..+.... ...++++...||+.+.++.++...... +|-.+|+.++|.+.+++
T Consensus 466 eilqgit~aliWa-a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 466 EILQGITHALIWA-AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHHHHHHHHHH-HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 6778888887777 778899999999999999999876554 66689999999988873
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.004 Score=56.56 Aligned_cols=123 Identities=16% Similarity=0.130 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cCC-chhHHHHHHHHHHHHHHHHHHHHhcC-CCCchhHHHHHHHHHHHH
Q 041066 68 TVFLMTLFTIAGSLGGLFGGWMGDTLVKR--LPN-SGRIILSQISSGSVIPIAAVLLLVLP-DDPSTGFMHGLVLVIMGL 143 (329)
Q Consensus 68 ~~~~~~~~~i~~~v~~~~~g~l~dr~g~r--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~ 143 (329)
.+++.+...+..++.+++.+++=.|..+| .+. ..+.-..++...++..+..+...... ....+.+++....++.++
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~ 389 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGF 389 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHH
Confidence 56667777777778888877776676443 221 11122222222222221111111111 111234557777788899
Q ss_pred HhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 144 CISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+--+..| +..++++++.|++.+|..+|+..... +++++.+.|.+.+.
T Consensus 390 gEl~~sP-vgls~~~~laP~~~~g~~mg~w~l~~---~~~~~~~~g~~~~~ 436 (493)
T PRK15462 390 AELFIDP-VAMSQITRIEIPGVTGVLTGIYMLLS---GAIANYLAGVIADQ 436 (493)
T ss_pred HHHHHCh-HHHHHHHHhChHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 9988888 89999999999999999999985432 24445555555443
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00016 Score=61.61 Aligned_cols=126 Identities=13% Similarity=0.041 Sum_probs=84.9
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
..+|+++.+.|.+++..++.+.+......+..+|..... .. ........+....+.+.. ... ...+....
T Consensus 290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~-----~a-~l~~~l~~~vP~~llls~---~~~-~~~l~~~s 359 (451)
T KOG2615|consen 290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNI-----KA-VLLFSLLLIVPAFLLLSL---ART-PVVLYLGS 359 (451)
T ss_pred CccCCChhhheeeeehhhHHHHHHHHhccccccccccch-----hh-HHHHHHHHHHHHHHHHhc---ccc-chhhhHHH
Confidence 568999999999988888877777666666665543111 00 011111222122222221 222 23456666
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
.+..+......+ ....++....|+++||++.|+....+.++-++||.+.|.+..+.
T Consensus 360 ~l~sf~~A~~vt-~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 360 TLKSFSTASVVT-CLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred HHHHHHHHHhhH-HHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 677777777677 67888888899999999999999999999999999999887763
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00042 Score=62.77 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhc
Q 041066 68 TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISW 147 (329)
Q Consensus 68 ~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 147 (329)
.++..++..+...+..++.|-++|+-++|| .++. ....++..... .+... .+..++...++.++..++...
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk-----~~l~-~~~~~~~~~~~-~l~~v--~~~~~~~~~~l~iia~v~~~~ 142 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRK-----RFLL-IFTLLGVLATA-LLWFV--SPGQWWLALVLFIIANVGYEA 142 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccch-----HHHH-HHHHHHHHHHH-HHHHh--CcchHHHHHHHHHHHHHHHHH
Confidence 355667778888888999999999998888 3332 22233332323 33322 222233344444444445544
Q ss_pred cCCCCchhHHhhhcCCcch--------------------------hHHHHHHHHHHHHHhhhHHHHHHHHh
Q 041066 148 NAPTTNNPIFAEIVPERSR--------------------------TSIYALDRSFESILASFAPPVVGLLA 192 (329)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~--------------------------g~~~~~~~~~~~~g~~~~~~~~g~l~ 192 (329)
... ...+++.++.+++.+ ++.++.-...+++|+.+.-.+.-.+.
T Consensus 143 ~~v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~ 212 (477)
T PF11700_consen 143 SNV-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV 212 (477)
T ss_pred HHH-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 568899999988888 99999999999999977766654443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00033 Score=62.86 Aligned_cols=136 Identities=16% Similarity=0.211 Sum_probs=85.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh---h-hccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCch
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL---V-KRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPST 130 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~---g-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (329)
|++.+++|+++.+...+.....+-. ...++.|.++|-+ | ||++ + .+++..++. .+...+...+....+
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~-----Y-~~i~~~~~~-~~~~~~~~~~~~~~s 85 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKP-----Y-MIIGWLLGA-VSALVLALLPASESS 85 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchH-----H-HHHHHHHHH-HHHHHHHhcccccch
Confidence 5666899999999888776555543 3468899999986 3 3442 2 223333332 223333334443333
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcC--CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVP--ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
.....+++++..++....-. ..-++..|... ++.+|...+.....+.+|+.++..+.|.+.+. .++..
T Consensus 86 ~~~~~~~l~la~~g~a~~DV-~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~-~~~~~ 155 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADV-AADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS-FGPQG 155 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHH-hhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc-CCCeE
Confidence 34445555666666655444 55667777652 22378888899999999999999999998887 34444
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00093 Score=61.81 Aligned_cols=133 Identities=17% Similarity=0.127 Sum_probs=83.6
Q ss_pred HHHHHHh-CCChhH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC--chhHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 041066 55 AYVVRTI-GFSHGL--TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPN--SGRIILSQISSGSVIPIAAVLLLVLPDDPS 129 (329)
Q Consensus 55 ~~~~~~~-g~s~~~--~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (329)
.++.+.+ |.+.+. ...+.+..++++.+|++.+|.++....+|+.. ..+.+. +....++.+...+++...+.
T Consensus 377 ~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~-l~~~~~~~~~~lll~~~~p~--- 452 (591)
T PTZ00207 377 RFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIA-LFIPSVCIITMLTLFLTLPK--- 452 (591)
T ss_pred HHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHH-HHHHHHHHHHHHHHHHHCCc---
Confidence 5555677 773322 33377888999999999999988433333310 111111 11222222222222222221
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhH-HHHHHHHhhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFA-PPVVGLLAQHV 195 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~-~~~~g~l~~~~ 195 (329)
..+.+..++.|++.|...+ +....++|++. ++-|+-+-+.....-+|+.+- -.+.|.++|..
T Consensus 453 --~~L~~~~~lvg~~~G~~~~-~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~e 515 (591)
T PTZ00207 453 --AALPLPYFIAAFANGFMAA-TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQ 515 (591)
T ss_pred --cHhHHHHHHHHHHhhHhHH-HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2377888889999998888 88999999999 778888888777777777444 56677787763
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=47.39 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=40.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
|.+.++.|+|+.+.|++.++..+..+++.++.|+++||.++++
T Consensus 24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 5566889999999999999999999999999999999999988
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.66 E-value=1e-05 Score=74.13 Aligned_cols=138 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHH-HHHHHHhc-------
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTI-AGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPI-AAVLLLVL------- 124 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i-~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 124 (329)
|-|+ .+++.++.+++++.....+ +.++|.+++|++.+|+.-+.... +...++..++.... ...++...
T Consensus 329 pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~--~~~~~v~~~v~~~~~~~~~~~~C~~~~~aG 406 (539)
T PF03137_consen 329 PKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGA--AKFCIVVSIVSVILYSPLFFLGCPNPPIAG 406 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHH--HHHHHHHHHHHHHHHHHHHeecCCCCceee
Confidence 6666 7899999999998876654 78889999999999986543211 11111222222221 11111100
Q ss_pred ---CC----------------------------------C-CchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcch
Q 041066 125 ---PD----------------------------------D-PSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSR 166 (329)
Q Consensus 125 ---~~----------------------------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 166 (329)
+. . ......+.+.+++..+..+.... +...+....+++++|
T Consensus 407 v~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~-p~~~i~LR~V~~~~r 485 (539)
T PF03137_consen 407 VTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQV-PSTLITLRCVPPEQR 485 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhccc-chheeeeccCChhhc
Confidence 00 0 00112222222333333333333 455666678899999
Q ss_pred hHHHHHHHHHHHH-HhhhHHHHHHHHhhhh
Q 041066 167 TSIYALDRSFESI-LASFAPPVVGLLAQHV 195 (329)
Q Consensus 167 g~~~~~~~~~~~~-g~~~~~~~~g~l~~~~ 195 (329)
+.+.|+..++..+ |..-||.+.|.+.|..
T Consensus 486 s~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 486 SFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp ------------------------------
T ss_pred chhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 9999999877665 5589999999999974
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0021 Score=58.88 Aligned_cols=129 Identities=13% Similarity=0.075 Sum_probs=73.6
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
..+|-+....+.+.+.+..+..+|+.+++++.++.-++. ...-+...+++.....++..................
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~-----~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~ 117 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGF-----VAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLV 117 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899999999999999998888764433322 111111111111111111111111111122233444
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++.++..|...| ....+..+. ..+..|...|-......+|+++|+.+.++++-.
T Consensus 118 ~~~~~l~G~~~P-l~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp 171 (521)
T PRK03612 118 LLIGLLIGMEIP-LLMRILQRI-RDQHLGHNVATVLAADYLGALVGGLAFPFLLLP 171 (521)
T ss_pred HHHHHHHHHHHH-HHHHHHHhc-cccchhhhhhhhHhHHhHHHHHHHHHHHHHHHH
Confidence 556777777666 444433332 222356778888889999999999998887653
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00074 Score=60.65 Aligned_cols=104 Identities=16% Similarity=0.096 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCch
Q 041066 75 FTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNN 154 (329)
Q Consensus 75 ~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 154 (329)
.++..++.++..|.++||+|||.. +.+......+.... ..... +|.+. ..-+.|.. +.... ...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~----L~~~~~~~~l~~~~----~~~~~-----~~~~~-~~~l~g~~-~~~~s-~~~ 134 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVV----LLLPLFGTILPALC----LLFQG-----YWFFL-LLGLSGGF-SAIFS-VGF 134 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhh----HHHHHHHHHHhHHH----HHHHH-----HHHhh-hcccccch-hhhhh-hhh
Confidence 367888899999999999999973 22212222221111 11110 22121 11111211 22222 568
Q ss_pred hHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 155 PIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 155 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++++|....+.|....|+.+.....+..++|.+.+.+...
T Consensus 135 a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~ 174 (463)
T KOG2816|consen 135 AYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKF 174 (463)
T ss_pred hheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999998887
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=53.83 Aligned_cols=129 Identities=20% Similarity=0.286 Sum_probs=84.6
Q ss_pred HHHHHHhCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVVRTIGFSH--GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~~~~g~s~--~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
+.+....+.+. ...++......+...++.++.|++.||.|||+ .... .... .....+....... ...+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-----~~~~--~~~~-~~~~~~~~~~~~~--~~~~ 95 (338)
T COG0477 26 PLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRK-----VLII--GLLL-FLLGTLLLALAPN--VGLA 95 (338)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchH-----HHHH--HHHH-HHHHHHHHHhCcc--chHH
Confidence 44455555555 47888888888999999999999999998885 2221 1111 1122222222222 2344
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCC-cchhHHHHHHHH-HHHHHhhhHHHHHHHHhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPE-RSRTSIYALDRS-FESILASFAPPVVGLLAQH 194 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 194 (329)
.+.+..+..|++.+...+ ...+++.+..|. +.++...+.... ...++..+++.+.+.+...
T Consensus 96 ~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 96 LLLILRLLQGLGGGGLLP-VASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555557777776666 778889999887 568888888888 5667778888776666554
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0072 Score=54.42 Aligned_cols=178 Identities=13% Similarity=0.177 Sum_probs=110.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC---------ccc-------------cCCcchhHH------HH-HH
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS---------RAK-------------DQKPHKAFC------FV-IF 54 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~---------~~~-------------~~~~~~~~~------f~-~~ 54 (329)
.|.-.+|.+..+..++..+..++++||+...+... ... +..+.|..+ +. ..
T Consensus 175 ~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~ 254 (463)
T KOG2816|consen 175 LGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSL 254 (463)
T ss_pred cCchHHHHHHHHHHHHHHHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHH
Confidence 34556788888887888888888888843322221 000 000112222 11 11
Q ss_pred ----------HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHH
Q 041066 55 ----------AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGG-WMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLL 122 (329)
Q Consensus 55 ----------~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (329)
+++. ..+|++..+.+.+.+...+...++.++.. .+...++.++ ++ ......-......+.
T Consensus 255 ~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~-----~i---~lGl~~~~~~~~~~a 326 (463)
T KOG2816|consen 255 PEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR-----LI---SLGLLSEFLQLLLFA 326 (463)
T ss_pred HHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----Hh---hHHHHHHHHHHHHHH
Confidence 2333 46899999999999888888888887776 6677777776 22 222222223333333
Q ss_pred hcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 123 VLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+.... |........ ........| ...+.++...+++++|++.++...+..+.+.++|.+.+.+...+
T Consensus 327 f~~~~----w~~~~~~v~-~~~~~~~~p-a~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 327 FATET----WMMFAAGVV-VALAGIVFP-AIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred Hhccc----hhhhHHHHH-HHhhcchhH-HHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 32221 122222222 223333355 67888888889999999999999999999999999998887654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.51 E-value=1.5e-05 Score=73.05 Aligned_cols=132 Identities=8% Similarity=0.051 Sum_probs=2.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc----C-C---
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL----P-D--- 126 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~--- 126 (329)
+.+.+.++++.+++|++.+.+-++.++..++..++.+|..|.+... ...+.+.++.+++.+. . .
T Consensus 27 ttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig--------~g~~~~~~g~~l~~lPhf~~~~y~~~ 98 (539)
T PF03137_consen 27 TTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIG--------IGALLMGLGSLLFALPHFLSGPYSYE 98 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceee--------ecHHHHHHHHHHHhccHhhcCCCccc
Confidence 5667889999999999999999999999999999988755444211 1111111121111100 0 0
Q ss_pred --------------------------------------CCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhH
Q 041066 127 --------------------------------------DPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTS 168 (329)
Q Consensus 127 --------------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~ 168 (329)
......++.+.-++.|+|.....+ +..+++=|.++++..+.
T Consensus 99 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~t-LG~tYiDDnv~~~~spl 177 (539)
T PF03137_consen 99 EASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYT-LGITYIDDNVSKKNSPL 177 (539)
T ss_dssp -----------------------------------------------------SSS------------------------
T ss_pred cccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcc-ceeeeeccccccccCcc
Confidence 000234455566667777777777 78899999999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 169 IYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 169 ~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
..|+...+..+|-++|-.+++.+++.+
T Consensus 178 YiGi~~~~~~lGPa~Gf~lg~~~L~~y 204 (539)
T PF03137_consen 178 YIGILYAMSILGPALGFLLGSFCLRIY 204 (539)
T ss_dssp ---------------------------
T ss_pred chhhhhHHhhccHHHHHHHHHHHHhce
Confidence 999999999999888888888777653
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0006 Score=61.19 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=40.0
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
+...+++++.|+...|+.+|+...+.|+|..++..++..+.+..
T Consensus 338 P~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~ 381 (433)
T PF03092_consen 338 PSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELF 381 (433)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36778899999999999999999999999999999998888774
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.035 Score=49.53 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=80.6
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC---chh
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP---STG 131 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 131 (329)
..|....|+++...|.+-+...+.++.++++..++.+|+|..+. +++ .+..-..++..+...++. +..+ ...
T Consensus 282 t~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~---G~~-~l~~q~~~L~~~v~~~~~-~~~~~~~~s~ 356 (432)
T PF06963_consen 282 TAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA---GLW-SLWWQWVCLALCVVSFWA-PGSPFSSISA 356 (432)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh---HHH-HHHHHHHHHHHHHHHHhc-CCCCchhhHH
Confidence 44555669999999999999999999999999999999997662 121 122223333333333332 2222 111
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHH
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPV 187 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 187 (329)
..+.....+.=+|.-..=. ...-+++|.+|+++||..+|+.+..+++...+.-.+
T Consensus 357 ~~l~~gi~~SR~GLW~fDL-~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 357 YLLLGGIALSRIGLWSFDL-AVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHhhhH-HHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222222222 456788899999999999999999999887665544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0059 Score=53.58 Aligned_cols=127 Identities=15% Similarity=0.058 Sum_probs=81.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH-HHhcCCCCchhH--HHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL-LLVLPDDPSTGF--MHG 135 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~ 135 (329)
+.|| +...+-++..++.+..+...+.+-|+.||+|-|.. .. ++.....+.+.+= ....+..++..+ +..
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-----~l--lgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~ 144 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-----LL--LGTVLNGIGAWIRLISSLPFVPPLFRRPLTH 144 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-----HH--HHHHHHHHHHHHhhhccCccccccchhhhhH
Confidence 5677 77777888889999999999999999999998862 11 2222222222221 111222223233 333
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..-.+.+....+... .-.-+..-.+|+++|..+..+..+...+|.+++..+.+.+..+
T Consensus 145 ~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 145 TGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred HhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 444444554444443 2234455568999999999999999999998888887777655
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0043 Score=54.04 Aligned_cols=113 Identities=12% Similarity=0.110 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 041066 66 GLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145 (329)
Q Consensus 66 ~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (329)
...++..++..+...+-+++.|.++|+.|+||+ ... ....+.. .....++..+.. ++++...+++.+..++.
T Consensus 58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~-----~~~-~f~~i~i-~~~~~L~~i~~~-s~~~~~l~~~il~~i~~ 129 (438)
T COG2270 58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKK-----FFG-FFTAIGI-ISTFLLWFIPPG-SYLLLLLLFLILASIGF 129 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcch-----HHH-HHHHHHH-HHHHHHHHhCCC-chHHHHHHHHHHHHHhc
Confidence 344566667778888889999999999999984 221 2222222 222333333333 45666667777777777
Q ss_pred hccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHH
Q 041066 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPV 187 (329)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 187 (329)
..... ...+++.++.+++..+..+++....+++|+.+.-.+
T Consensus 130 ~~s~V-fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~ 170 (438)
T COG2270 130 EFSNV-FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIF 170 (438)
T ss_pred chhhe-ehhhHhhhhcCccccCcccccccccccccchHHHHH
Confidence 66555 678999999999999999999999999998655444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.007 Score=45.77 Aligned_cols=107 Identities=9% Similarity=0.038 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCC
Q 041066 71 LMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAP 150 (329)
Q Consensus 71 ~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 150 (329)
-.++......+..++++.+.+++|.|+ .++...++..+....+. .+ ..+.+...-.+.|++.+....
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~--------sm~lg~~~y~~y~~~~~-~~----~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKW--------SMILGSLGYAIYIASFF-YP----NSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHH--------HHHHHHHHHHHHHHHHH-hh----hHHHHHHHHHHHhhhhHHhhH
Confidence 344556677788888899999999987 22333333333222222 11 245577777888888888777
Q ss_pred CCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 151 TTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 151 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
..-.++.+...++.+++-.++...+.+.+..+|..+.-.+
T Consensus 109 -aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 109 -AQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred -hhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888888999999999999888877777665444
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.052 Score=48.53 Aligned_cols=122 Identities=14% Similarity=0.062 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc--CC-chhHHHHHHHHHHHHHHHHHH--HHhcCCCCchhHHHHHHHHHH
Q 041066 67 LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL--PN-SGRIILSQISSGSVIPIAAVL--LLVLPDDPSTGFMHGLVLVIM 141 (329)
Q Consensus 67 ~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 141 (329)
..++..+...+..++.+++..++..++++++ +. ..+.-..+..+.++..+.... ....+....+.++++...++.
T Consensus 325 p~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~ 404 (498)
T COG3104 325 PPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQ 404 (498)
T ss_pred CHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH
Confidence 3456677777888888888888888865553 21 111111112222222111111 111113334567788888999
Q ss_pred HHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHH
Q 041066 142 GLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVG 189 (329)
Q Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g 189 (329)
+++--+..| +..+++....|++..+..+|+.......+..++..+.+
T Consensus 405 s~gEL~iSp-vGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 405 SFGELFISP-VGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHhCH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 999988888 88999999999999988888888777777666666654
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0033 Score=53.86 Aligned_cols=64 Identities=19% Similarity=0.188 Sum_probs=57.2
Q ss_pred hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
+...+.+.+++.|.|.+...+ ..+.++.++.+++.+++..++...+..+|..++|.+.+.+...
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~-~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~ 72 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQV-AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILS 72 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHh-hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 355678888999999999888 8899999998888899999999999999999999999988854
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.099 Score=47.29 Aligned_cols=124 Identities=15% Similarity=0.058 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCc--------------
Q 041066 65 HGLTVFLMTLFTIAGSLG-GLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPS-------------- 129 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~-~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 129 (329)
.+...++.+...+...+. .++.+++++|++|++ +...+....+... ..+.+...+..+.
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~-----lf~~~~~~F~~~f-~lF~~vl~p~~~~~~p~~~~~~~~~~~ 115 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEA-----LFYTVISPFLGFF-ALFAFVIYPLSDLLHPTALADKLLSLL 115 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH-----hHHHHHHHHHHHH-HHHHHHHhcchhhcCCcHHHHHHHhhc
Confidence 345666666554444444 788999999999998 4432222222221 1111221221111
Q ss_pred -----------hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 130 -----------TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 130 -----------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..|...+..+...+.......-..|+.+.|+...++..+-+++.....++|..+++.+..++.+.
T Consensus 116 ~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~ 191 (472)
T TIGR00769 116 PPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL 191 (472)
T ss_pred chhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01122222222233222222115799999999999999999999999999999999998887753
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.31 Score=43.84 Aligned_cols=33 Identities=9% Similarity=-0.017 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcc
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERS 165 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 165 (329)
.+..++..++.|++.+.... ....+.+ .+|++.
T Consensus 106 f~~~~~~v~~~g~~~~~~q~-s~~gla~-~fp~~~ 138 (437)
T TIGR00939 106 FVTTMASVVIINSGMALLQG-SLFGLAG-VFPSTY 138 (437)
T ss_pred HHHHHHHHHHHHhhhhhhcc-cchhhcc-cCCHHH
Confidence 44455555666777766555 4555555 446543
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.028 Score=37.46 Aligned_cols=43 Identities=14% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
|.+.++.++|..+.|++.+...++..+|.+...++.++..+++
T Consensus 16 P~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~ 58 (85)
T PF06779_consen 16 PLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRR 58 (85)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 8888999999999999999999999999999999988755554
|
Note that many members are hypothetical proteins. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.24 Score=44.30 Aligned_cols=43 Identities=12% Similarity=-0.082 Sum_probs=31.7
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
|.++ +.+.-+-.-.+.......+..++..+..|.+.||..|.+
T Consensus 26 ~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~ 69 (432)
T PF06963_consen 26 PLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLK 69 (432)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchh
Confidence 4444 455445556666666778888889999999999988776
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0028 Score=55.60 Aligned_cols=129 Identities=12% Similarity=0.098 Sum_probs=80.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhccCCchhHHHHHHHHHHHHHHHHHH------HHhc
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT----LVKRLPNSGRIILSQISSGSVIPIAAVL------LLVL 124 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr----~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 124 (329)
|.|.+..|++....+.+....-+.+++..++.|..+|| +||||+. +.. ....+.+.+..+. ..+.
T Consensus 56 tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPf---I~~--~s~~i~~~l~Lig~aaDig~~lg 130 (498)
T KOG0637|consen 56 TPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPF---ILA--GSLLIAVSLFLIGYAADIGLLLG 130 (498)
T ss_pred cHHHHHcCCCcccccccccccccccceecccccccccccccccccccch---HHH--hhHHHHHHHhhhhhHhhhhHHhc
Confidence 66677899999999999888888999999999999996 7888863 111 1111111111111 1111
Q ss_pred CCCCc-----hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhH-HHHHHHHHHHHHhhhHHHHHH
Q 041066 125 PDDPS-----TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTS-IYALDRSFESILASFAPPVVG 189 (329)
Q Consensus 125 ~~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~g 189 (329)
..... .....++.+.+.-+..-.... +.-+++.|+..+.++.+ +++.+.++..+|+.+|-.+.+
T Consensus 131 d~~~~~~~~rai~~~~lg~~LLD~A~n~~qg-p~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 131 DNERKPVKPRAIVLFILGFWLLDVANNTLQG-PCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred CCcccccchHHHHHHHHHhHHHHhhhhhhhh-hHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 11111 112223333333334433344 57889999987666666 999999999999888877655
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.056 Score=48.59 Aligned_cols=104 Identities=8% Similarity=0.121 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHhh
Q 041066 67 LTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCIS 146 (329)
Q Consensus 67 ~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 146 (329)
.-|..-++..+.+.+.++..|++-.++.+-. .+. ...+..+.+.+++. +..+. ..+...+..++.+....
T Consensus 299 yNG~veA~~tllga~~a~~ag~~~~~w~~~~----~l~----l~v~s~~~~gll~~-m~~t~-~Iw~~Y~~yvlf~~~y~ 368 (511)
T TIGR00806 299 YNGAVDAASTLLGAITSFIAGFVNIRWARWS----KLL----IAVVSAIQAGLVFW-MSQSH-DIWVLYVTYVLFRGIYQ 368 (511)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhcCCchhhH----HHH----HHHHHHHHHHHhhh-hhccc-chHHHHHHHHHHHHHHH
Confidence 4566666777778888889998854442211 011 22222222222222 23333 35666677777777766
Q ss_pred ccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh
Q 041066 147 WNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA 181 (329)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~ 181 (329)
+..+ +...-++.....+.-|..+|+.+++.-+-.
T Consensus 369 flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQ 402 (511)
T TIGR00806 369 FLVP-IATFQIASSLSKELCALVFGINTFVATALK 402 (511)
T ss_pred HHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHH
Confidence 6565 445555555566667888998887765444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.27 Score=40.27 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=19.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC
Q 041066 5 GWRITFHLVGLISVIVGILVYLFAKD 30 (329)
Q Consensus 5 gWr~~f~i~~~~~~~~~i~~~~~~~~ 30 (329)
.|++++.+.+++.++.+++..++-++
T Consensus 39 ~W~~I~si~~lL~~IpLIly~ifGk~ 64 (267)
T PF07672_consen 39 NWQWILSIFILLIFIPLILYIIFGKN 64 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 49999999988877777766666443
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.018 Score=54.08 Aligned_cols=143 Identities=9% Similarity=0.012 Sum_probs=95.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH-------HH-----
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL-------LL----- 122 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~----- 122 (329)
..+-+.++++.++.|++...+-++..+...+..+...|..|.+....+.++..++.++....=... -.
T Consensus 121 ttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~ 200 (735)
T KOG3626|consen 121 TTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSV 200 (735)
T ss_pred hhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccc
Confidence 444477999999999999999999999999999988887766632222222111111111000000 00
Q ss_pred hcC---------------------------CCC-chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHH
Q 041066 123 VLP---------------------------DDP-STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDR 174 (329)
Q Consensus 123 ~~~---------------------------~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 174 (329)
..+ ... ..+.++.+..++.|+|.....+ ...+++=|.+.+++.....|+..
T Consensus 201 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t-lGisYiDDnvk~~~SplYlgi~~ 279 (735)
T KOG3626|consen 201 ENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT-LGISYIDDNVKKKNSPLYLGILY 279 (735)
T ss_pred cCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc-CCCccccccccccCCcHHHHHHH
Confidence 000 000 0234566667777888877777 88899999998888999999999
Q ss_pred HHHHHHhhhHHHHHHHHhhhhcCC
Q 041066 175 SFESILASFAPPVVGLLAQHVHGY 198 (329)
Q Consensus 175 ~~~~~g~~~~~~~~g~l~~~~~~~ 198 (329)
++..+|-++|-.+++++...+..+
T Consensus 280 ~~~~lGPaiGfllgS~~l~lYvD~ 303 (735)
T KOG3626|consen 280 SMAILGPAIGFLLGSFCLKLYVDF 303 (735)
T ss_pred HHHHhhhHHHHHHHHHHHHeeecc
Confidence 999999999988888888765433
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0087 Score=52.71 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=52.3
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCc---chhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPER---SRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+.+.++++++|.|..=| ...++..|.++++ ++...+..+.+..|+|+.++..+.+++.+.
T Consensus 33 ~~~~~~gL~lia~G~G~~K~-ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~ 98 (372)
T PF00854_consen 33 LGLFYIGLALIAVGTGGIKP-NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN 98 (372)
T ss_dssp -CHHHHHHHHHHHHHHCCHH-HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHHhccccccc-cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc
Confidence 34577788889999998888 8899999998765 477788899999999999999998888766
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.018 Score=51.77 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=41.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLP 98 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~ 98 (329)
+.|.+++|+++.+.|.++...-+..+++.++.|+++||+.++|+
T Consensus 35 ~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~ 78 (618)
T KOG3762|consen 35 AVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRP 78 (618)
T ss_pred HHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCc
Confidence 66778999999999999999999999999999999999998885
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.29 Score=43.93 Aligned_cols=116 Identities=13% Similarity=0.122 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC-------------chhHHHH
Q 041066 69 VFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP-------------STGFMHG 135 (329)
Q Consensus 69 ~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 135 (329)
++.....+++.+++....+.+.+|..+..... .+. ++..+......+.....+... .......
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~--~~~--~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKP--TVL--IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCc--chh--HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHH
Confidence 33444556777777777777776643332110 221 222222222222222223211 1134566
Q ss_pred HHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHH
Q 041066 136 LVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGL 190 (329)
Q Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~ 190 (329)
++.++.|++-+.... ..+.++...+ ++.|..+.++..+-+.+++.++-...+.
T Consensus 358 ii~~l~G~~D~~~~t-~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNT-QRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 677778888877666 6788888888 4568999999998888877666555443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.3 Score=43.15 Aligned_cols=125 Identities=15% Similarity=0.050 Sum_probs=78.2
Q ss_pred HHHHHH-hCCChhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYVVRT-IGFSHGLTVFLMTLF-TIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~~~~-~g~s~~~~~~~~~~~-~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
||+... .|++..+..--.-+. .=..++..++...+.|.++-|. ++ +...++.+....++... . ...
T Consensus 28 ~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykp-----vi---il~~~~~i~t~~lll~~---~-sv~ 95 (412)
T PF01770_consen 28 PYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKP-----VI---ILQALSYIITWLLLLFG---T-SVL 95 (412)
T ss_pred HHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhH-----HH---HHHHHHHHHHHHHHHHH---C-cHH
Confidence 666643 888888876544444 3466666778889999998886 33 33333333333333321 2 233
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+-+.-+..|++.+.-. ..++++-..+++++--+++|.......+|..++..++=.+..
T Consensus 96 ~mq~~q~~yg~~~a~ev--ay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs 154 (412)
T PF01770_consen 96 AMQLMQFFYGLATAAEV--AYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVS 154 (412)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666665533 356777777788888888888888777777777766655554
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.43 Score=42.11 Aligned_cols=60 Identities=15% Similarity=-0.040 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLL 191 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l 191 (329)
.+.+.+..+..|+..|.... .....+.+-.++++|-.++|.......+|..++..++-.+
T Consensus 335 i~ivf~lif~eGLlGGa~YV-NtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYV-NTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHH-HHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45566667777887777666 6677777777899999999999999988887777765433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.041 Score=49.50 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=40.4
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
...++.+++..++.+++..+++...+.++..++|.+...+... .++++
T Consensus 408 ~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~-~g~~~ 455 (488)
T KOG2325|consen 408 ALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL-SGPRP 455 (488)
T ss_pred hHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh-cCccH
Confidence 5678889999999999999999999999999999988877766 44444
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.089 Score=43.30 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=56.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
+.+|+...+.|.++.......++...+.|-++||.|||+. .+...+...++++ ...++. +-.+.+..
T Consensus 65 stYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKra--------cvtycitYiLsCi----TKhSpq-YkVLmVGR 131 (454)
T KOG4332|consen 65 STYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRA--------CVTYCITYILSCI----TKHSPQ-YKVLMVGR 131 (454)
T ss_pred hhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccc--------eeeehHHHHHHHH----hhcCCc-eEEEeehh
Confidence 7889999999998887777778888888999999999982 1122222222222 233332 23356677
Q ss_pred HHHHHHhhccCCCCchhHHhhhc
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIV 161 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~ 161 (329)
.+-|+.....+.+--..++.|..
T Consensus 132 ~LGGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 132 VLGGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhh
Confidence 77777766555422234556653
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.6 Score=38.54 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHH
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIY 170 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 170 (329)
.+...+.....+++.+.... ......++. |++.....+
T Consensus 117 f~vt~~~vv~~~~a~a~~qg-s~~G~a~~~-P~~ytqavm 154 (406)
T KOG1479|consen 117 FLVTLIIVVLLNLANAVVQG-SLYGLAGLF-PSEYTQAVM 154 (406)
T ss_pred HHHHHHHHHHHhhhhhhhcc-chhhhhhcC-CHHHHHHHH
Confidence 34444555555666665554 455555554 666544433
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.0021 Score=52.94 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=87.4
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLV 137 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (329)
.+.+++.++..++.+.+..-.++...++|++.|| +|.|... ++. +++.+ ++-+.+.. .......|.....
T Consensus 72 ~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gt---ii~----~~fv~-~GqliFa~-Ggi~~aFw~M~~G 142 (459)
T KOG4686|consen 72 LDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGT---IIL----CIFVF-LGQLIFAA-GGISHAFWTMLAG 142 (459)
T ss_pred cccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHH---HHH----HHHHH-HHHHHHHh-chHHHHHHHHHhh
Confidence 3455666677788888888889999999999997 5655421 111 11111 11112211 1112346677788
Q ss_pred HHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 041066 138 LVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 138 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
.++.|+|.-.... ..+.++.-.+..++-+.++|+...+..+|+.+--.+.+++.+..+
T Consensus 143 RF~FGIGgESlAV-aQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~ 200 (459)
T KOG4686|consen 143 RFLFGIGGESLAV-AQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMG 200 (459)
T ss_pred heeeccCchhhhh-hhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHH
Confidence 8888888755444 567777777888889999999999999999888888888888753
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.28 E-value=2.9 Score=39.12 Aligned_cols=138 Identities=19% Similarity=0.090 Sum_probs=81.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCCchhHHHHHHHHHHHHHH------HHHHHHhcCC-
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-VKRLPNSGRIILSQISSGSVIPI------AAVLLLVLPD- 126 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~- 126 (329)
.|+...++.+...+.-....+........+++++++|-+ ||.+ .+. ++..+.... ......+.+.
T Consensus 62 ~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~-----tI~--~~s~i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 62 TYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYF-----TIN--IGSLISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred HHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH-----HHH--HHHHHHHHHHHHHHHHHHhhhcCCcc
Confidence 556678888887777777777777777889999999974 5554 111 111111111 1111111110
Q ss_pred -----C----C--c--hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCC----c--chhHHHHHHHHHHHHHhhhHHHH
Q 041066 127 -----D----P--S--TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPE----R--SRTSIYALDRSFESILASFAPPV 187 (329)
Q Consensus 127 -----~----~--~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~--~~g~~~~~~~~~~~~g~~~~~~~ 187 (329)
. . . ....+...+..+++|.+..-| ...+.-.|-++. + ....-+..+.+..++|..++..+
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~-~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~ 213 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRP-CLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV 213 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCC-cchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence 0 0 1 123455666666777777777 778888888772 1 22355667777777887777777
Q ss_pred HHHHhhhhcCCCCC
Q 041066 188 VGLLAQHVHGYKPV 201 (329)
Q Consensus 188 ~g~l~~~~~~~~~~ 201 (329)
.-+.-+. .+|...
T Consensus 214 ~vyiq~~-~~w~lg 226 (571)
T KOG1237|consen 214 LVYIQDN-VGWKLG 226 (571)
T ss_pred HHhhhhc-ccceee
Confidence 6666555 455553
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.99 Score=40.66 Aligned_cols=108 Identities=6% Similarity=0.032 Sum_probs=76.9
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHh
Q 041066 67 LTVFL-MTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCI 145 (329)
Q Consensus 67 ~~~~~-~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 145 (329)
.+|+. .++......+..++++.+.|+++.|+ .+.....+....-+.++. ++ -+.+...-.+.|+|.
T Consensus 50 ~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~--------~lv~ga~~y~~f~~gfl~-~N----~y~~yfssallG~Ga 116 (461)
T KOG3098|consen 50 YAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKW--------ALVIGATCYAAFPLGFLF-PN----SYYLYFSSALLGFGA 116 (461)
T ss_pred CccHHHHHHHHHHHHHHHHhhHHHHHHhhHHH--------HHHHHhHHHHHHHHHHHh-cc----hHHHHHHHHHhhhhH
Confidence 34554 66778888999999999999999997 223344444333333332 21 234666777788888
Q ss_pred hccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 146 SWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
+.... ..-.++++...++...+..|+...+...+..+|..+.
T Consensus 117 allw~-GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 117 ALLWT-GQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred Hheec-ccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 77665 5678889998899999999999999988877776654
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.71 Score=40.21 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=37.0
Q ss_pred chhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhc
Q 041066 153 NNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVH 196 (329)
Q Consensus 153 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~ 196 (329)
..+..+.+.++..-|+-+.+.|+..|+|+-.=..+..++.|...
T Consensus 390 ~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 390 GMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 45566778899999999999999999999877778888888743
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=92.41 E-value=8.5 Score=35.11 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=36.4
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 195 (329)
...+.-+.+.+|..-|+.+.+.|++.|+|+---..+.=+++|..
T Consensus 425 ai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~f 468 (544)
T PF13000_consen 425 AIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYF 468 (544)
T ss_pred HHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhc
Confidence 35566677888999999999999999999977777777788874
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=91.79 E-value=0.52 Score=35.19 Aligned_cols=48 Identities=13% Similarity=-0.009 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILAS 182 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ 182 (329)
+..++..+.++|.+..+ +.+.+++...+++..|+..|+-.+-.|++-+
T Consensus 97 ~~~~~~S~~~Fg~gllG----isYGilSaSWD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 97 WAVLLVSLVFFGLGLLG----ISYGILSASWDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred hHHHHHHHHHHHHHHHh----hhhhhcccccCCCCCCCcccHHHHHHhHHHH
Confidence 33344444444444332 4566777777888899999999998887643
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.75 E-value=4.7 Score=36.96 Aligned_cols=42 Identities=14% Similarity=0.035 Sum_probs=38.0
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
..|..+.|+...++..+-+++.....++|..++..+...+.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999988888777
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea | Back alignment and domain information |
|---|
Probab=91.00 E-value=3.2 Score=36.70 Aligned_cols=18 Identities=11% Similarity=0.013 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 041066 77 IAGSLGGLFGGWMGDTLV 94 (329)
Q Consensus 77 i~~~v~~~~~g~l~dr~g 94 (329)
+..++...+.|++..|++
T Consensus 6 i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 444555566677776653
|
Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.36 E-value=20 Score=32.71 Aligned_cols=43 Identities=19% Similarity=0.092 Sum_probs=37.2
Q ss_pred CchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 152 TNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 152 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..|..+.|+...++..+-+++++...+++..++..+..++..+
T Consensus 168 lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~ 210 (509)
T COG3202 168 LFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKH 210 (509)
T ss_pred HHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678889998889999999999999999998888888777664
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=86.92 E-value=2.7 Score=37.24 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041066 64 SHGLTVFLMTLFTIAGSLGGLFGGWMGDTLV 94 (329)
Q Consensus 64 s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g 94 (329)
+....+.+...-.+-.++..++..++.+|+.
T Consensus 57 ~~~~t~~Vlladi~P~l~~Kl~aP~fi~~v~ 87 (402)
T PF02487_consen 57 KSVSTGAVLLADILPSLLVKLIAPFFIHRVP 87 (402)
T ss_pred CcccchHHHHHHHHHHHHHHHHhHhhhhhcc
Confidence 3333455555555666777778888888764
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.04 E-value=13 Score=32.31 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=67.9
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCchhHHH-HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVK-RLPNSGRIIL-SQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~-r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
.|-+..+.+.+.+.+...+.+|+.++-++.|.--. |. +.. ..++.+.++....+.+.+........+.+....
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~F-----v~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt 112 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARF-----VDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALT 112 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHH-----HHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHH
Confidence 46666777888777777777888777776654221 11 111 112222222222222222222333456677788
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
+++|.-.|.-.| ....+...-. .+.+..+.. ....-++|+..+..+.+++.-
T Consensus 113 ~vIG~LVG~EiP-L~mrml~~r~-a~~k~~~s~-vl~~DYLGal~~gLl~p~lll 164 (508)
T COG4262 113 AVIGVLVGAEIP-LLMRMLQRRQ-AKAKDLGSR-VLTLDYLGALAGGLLWPFLLL 164 (508)
T ss_pred HHHHHHHhcchH-HHHHHHHHHH-HHHHhhhhh-hhhhHhhhhhhHHHHHHHHHh
Confidence 888988888887 6666655521 121223333 333477887777777666543
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=85.84 E-value=6.4 Score=34.64 Aligned_cols=125 Identities=7% Similarity=-0.079 Sum_probs=59.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHh-----hhhhccCCchhHHHHHHHHHHHHHHHHHHHHhc---C-
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGD-----TLVKRLPNSGRIILSQISSGSVIPIAAVLLLVL---P- 125 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~d-----r~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 125 (329)
|++++.-|.|-++.+.....+.- .--.++...++| |+|||| -++.-.-..++..+..+..... .
T Consensus 54 P~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~Grrk-----sWvvp~q~llG~~mllLs~~v~~~~g~ 126 (510)
T KOG3574|consen 54 PLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRK-----SWVVPCQYLLGLFMLLLSYLVDRGLGG 126 (510)
T ss_pred HHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhcccc-----ceeeehHHHHHHHHHHHhhCCCccccc
Confidence 88888788887776665443211 111345566666 999998 3332222222222222221111 0
Q ss_pred CCCc-hhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHH
Q 041066 126 DDPS-TGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPV 187 (329)
Q Consensus 126 ~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~ 187 (329)
+... ....+...+++.-+..+..-. ..-.....+..+++-|-++.......+.|-+++-.+
T Consensus 127 ng~~p~v~~lt~~f~LLnflaAtQDI-AVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 127 NGGLPNVVALTLLFLLLNFLAATQDI-AVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhhh-hhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 1111 122222233333333332222 233344445566667777766666666666555443
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.70 E-value=6.2 Score=27.36 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=29.8
Q ss_pred CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 163 ERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 163 ~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
++.++.+.++--..-.+++.+.....||++|++.+..+
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~llD~~agTsP 74 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLLDKFAGTSP 74 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34577788888888888888888889999999765554
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=85.69 E-value=6.4 Score=35.87 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHH--hCCChhHHHHHHH---HHHHHHHHHHH-HHHHHHhhhhhcc
Q 041066 55 AYVVRT--IGFSHGLTVFLMT---LFTIAGSLGGL-FGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~~~--~g~s~~~~~~~~~---~~~i~~~v~~~-~~g~l~dr~g~r~ 97 (329)
|++++. .+.|-++.+.+.. ++.+ -++.+| +=...+.|+||||
T Consensus 24 PflL~~~~~~~sy~q~~~fSla~~PfSl-KlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 24 PFLLQSMAKKVSYSQQAIFSLASYPFSL-KLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred hhhhccccCCCChhHheeeeeeechhHH-HHhhhhhhhhhcccccCCcc
Confidence 777766 6777777766543 2333 333333 3345566899998
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=84.60 E-value=5.9 Score=35.78 Aligned_cols=56 Identities=11% Similarity=0.075 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHH
Q 041066 132 FMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVV 188 (329)
Q Consensus 132 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 188 (329)
+...+..++.|+..|.... ....+..+.+++++|..+..+..++-.+|-++|..+.
T Consensus 373 ~~~~~~~~l~gltnGy~~s-~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGS-LSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred HHHHHHHHHHHHhhhHHHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888887766 6666777778888898888888888888877777663
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.87 E-value=24 Score=29.67 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHH-HH--HHHHhcCCCCchhHHHHHHHHHHHHH
Q 041066 68 TVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPI-AA--VLLLVLPDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 68 ~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (329)
-|.+++.+.+..++|+-+..++..|-..|... .+. +...+.... .. ......+... ....-.+.+..+-.+
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~---ymq--ivf~vs~a~l~Lpilt~~vsP~ke-s~~~s~i~F~~~E~c 357 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKVES---YMQ--IVFLVSIAALLLPILTSSVSPSKE-SPSESLIGFCLFEAC 357 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCcccch---HHH--HHHHHHHHHHHHHHHHhccCCCcC-CchHHHHHHHHHHHH
Confidence 37778888888888887777776654433211 222 111111111 11 1111112211 122233444445556
Q ss_pred hhccCCCCchhHHhhhcCCcchhHHHHHHH
Q 041066 145 ISWNAPTTNNPIFAEIVPERSRTSIYALDR 174 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 174 (329)
.|...| ...-+-....|.+.|++.+-.+.
T Consensus 358 vGlfwP-SimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 358 VGLFWP-SIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred Hhhcch-HHHHHHHhhCCHHHHhhhhhhee
Confidence 666677 56666677788887766554433
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=83.42 E-value=33 Score=30.69 Aligned_cols=106 Identities=10% Similarity=0.068 Sum_probs=56.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHH
Q 041066 64 SHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGL 143 (329)
Q Consensus 64 s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 143 (329)
...-.|..-+...+.+.++++..|++-.++.+.. .+ .........+..++. +.... ..+...+..++.+.
T Consensus 283 ~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~-----~l---~l~~~S~l~a~~L~l-m~~t~-~Iwv~Y~~yIif~~ 352 (412)
T PF01770_consen 283 ESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG-----EL---ALGVFSLLQAGLLFL-MSFTG-NIWVCYAGYIIFRS 352 (412)
T ss_pred CcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH-----HH---HHHHHHHHHHHHHHH-HHHhh-HHHHHHHHHHHHHH
Confidence 3445577777788888888889998854444432 11 112222222222222 22222 34455555555555
Q ss_pred HhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHH
Q 041066 144 CISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESIL 180 (329)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 180 (329)
......+ +...-++.....+.-|.++|+.+++..+-
T Consensus 353 ~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~L 388 (412)
T PF01770_consen 353 LYMFLIT-IASFQIAKNLSEERYALVFGINTFVALVL 388 (412)
T ss_pred HHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHHH
Confidence 5544444 33333334445666788888877765443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.21 E-value=32 Score=30.39 Aligned_cols=43 Identities=14% Similarity=-0.080 Sum_probs=29.9
Q ss_pred HHHHH-HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 55 AYVVR-TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 55 ~~~~~-~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
..++. -.|-|...++.....-.....+..++.|...|+..|.|
T Consensus 51 sL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~K 94 (503)
T KOG2601|consen 51 SLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVK 94 (503)
T ss_pred HHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHH
Confidence 34444 44445556666666667777777888888899999887
|
|
| >COG5336 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.85 E-value=13 Score=25.86 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 041066 72 MTLFTIAGSLGGLFGGWMGDTLVKRL 97 (329)
Q Consensus 72 ~~~~~i~~~v~~~~~g~l~dr~g~r~ 97 (329)
++.-.+++++.....||+.||+-.-.
T Consensus 48 lssefIsGilVGa~iG~llD~~agTs 73 (116)
T COG5336 48 LSSEFISGILVGAGIGWLLDKFAGTS 73 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33445667777778899999975443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 57/243 (23%)
Query: 5 GWRITFHLVGLISVIVGILVYLFAKDTRCS---------------DGKSRAKDQKPHK-- 47
W ++ +++V + + +DT S D +A+ + K
Sbjct: 184 DWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQI 243
Query: 48 --------------AFCFVIFAYVVRTI-------------GFSHGLTVFLMTLFTIAGS 80
A V F Y++R F+ + + L+ AG
Sbjct: 244 FMQYVLPNKLLWYIAIANV-FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 302
Query: 81 LGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVI 140
G L GWM D + + R V V + +P + + +++
Sbjct: 303 PGTLLCGWMSDKVFRG----NRGATGVFFMTLVTIATIVYWMNPAGNP---TVDMICMIV 355
Query: 141 MGLCISWNAPTTN-NPIFAEIVPERSRTSIYALDRSFESILAS-FAPPVVGLLAQHVHGY 198
+G I P E+ P+++ + F + S A +VG G+
Sbjct: 356 IGFLI--YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF-FGW 412
Query: 199 KPV 201
Sbjct: 413 DGG 415
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 8e-07
Identities = 47/340 (13%), Positives = 94/340 (27%), Gaps = 102/340 (30%)
Query: 36 GKS-----RAKDQKPHKAFCFVIFAYVVRTIGFSH---GLTVFLMTLFTIAGSLGGLFGG 87
GK+ K F IF ++ + + + L L
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIF-WL--NLKNCNSPETVLEMLQKLLYQIDP--NWTSR 216
Query: 88 WMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD--DPST--GFMHGL-VLVIMG 142
+ +K +S + L ++ LLVL + + F +L+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNLSCKILL--- 270
Query: 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDRSF-------ESILASFA----------- 184
TT + + + T I S +S+L +
Sbjct: 271 --------TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 185 ----PPVVGLLA-------------QHVHGYKPVPKGASNSLEVETDRENAASLAKALYT 227
P + ++A +HV + +SL V E + ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNVLEPAEY-----RKMFD 376
Query: 228 AIG-------IPMTICCFIYSFLYCTYPRDRERVRIDALIESEMQK---LEKDNA----- 272
+ IP + I+ + + V ++ +++ K +EK
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDV------IKSDVM---VVVNKLHKYSLVEKQPKESTIS 427
Query: 273 -PSLKKNSQRHFSESKELNEKEVTDIDIEYGGEESTDIDD 311
PS+ + L+ V Y ++ D DD
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVD----HYNIPKTFDSDD 463
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-05
Identities = 52/371 (14%), Positives = 114/371 (30%), Gaps = 98/371 (26%)
Query: 32 RCSDGKSRAKD---QKPH----------------KAF---CFVIF----AYVVRTIGFSH 65
R ++ + KP+ AF C ++ V + +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 66 GLTVFLMTL---FTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIA-AVLL 121
+ L T L ++ + LP ++ + + P +++
Sbjct: 286 TTHISLDHHSMTLTPDEVKS-LLLKYLD-CRPQDLP-------REVLTTN--PRRLSIIA 334
Query: 122 LVLPDDPST--GFMHGL---VLVIMGLCISWNAPTTNNPIFAE--IVPERSRTSIYALDR 174
+ D +T + H + I+ ++ P +F + P + L
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-- 392
Query: 175 SFESIL-ASFAPPVVGLLAQHVHGYKPVPKGASNS--------LEVETDRENAASLAKAL 225
S++ V ++ +H Y V K S LE++ EN +L +++
Sbjct: 393 ---SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 226 YTAIGIPMTICC--------FIYSFLYCTY------PRDR----ERVRID-ALIESEMQK 266
IP T Y + + + +R V +D +E QK
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---QK 506
Query: 267 LEKD----NAPSLKKNS-------QRHFSESKELNEKEVTDIDIEYGGEESTDIDDNDKK 315
+ D NA N+ + + ++ E+ V I +++ + ++ +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYT 565
Query: 316 SLLPHQVTFSN 326
LL ++
Sbjct: 566 DLL--RIALMA 574
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 38.8 bits (89), Expect = 6e-04
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 252 ERVRIDALIESEMQKLEKDNAPSLKKNSQ 280
E+ + L ++ ++ D+AP+L +
Sbjct: 18 EKQALKKL-QASLKLYADDSAPALAIKAT 45
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.71 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.55 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.51 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.46 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.46 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.44 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.44 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.37 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.35 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.29 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.27 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.23 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.93 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.48 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-16 Score=138.47 Aligned_cols=182 Identities=14% Similarity=0.255 Sum_probs=125.4
Q ss_pred Ccc-hHHHHHHHHHHHHHHHHHHHHhhcC-CCCCCCCCcc-------------------------ccCCcchhHH-----
Q 041066 3 IPG-WRITFHLVGLISVIVGILVYLFAKD-TRCSDGKSRA-------------------------KDQKPHKAFC----- 50 (329)
Q Consensus 3 ~~g-Wr~~f~i~~~~~~~~~i~~~~~~~~-p~~~~~~~~~-------------------------~~~~~~~~~~----- 50 (329)
.+| ||++|++.+++.++..++.++.+|| |+.......+ ++..+++.++
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA 260 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHHHcCHHHHHHHHH
Confidence 356 9999999998888888777777777 3321110000 0112234444
Q ss_pred -HHH------H----HHHHHH-hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhccCCchhHHHHHHHHHHHHHH
Q 041066 51 -FVI------F----AYVVRT-IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL--VKRLPNSGRIILSQISSGSVIPI 116 (329)
Q Consensus 51 -f~~------~----~~~~~~-~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~--g~r~~~~~~~~~~~~~~~~~~~~ 116 (329)
+.. + |.+.++ +|++..+.+++.+...++.+++.++.|++.||+ ++|+ .+. .+..+...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~-----~~~--~~~~~~~~~ 333 (451)
T 1pw4_A 261 NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG-----ATG--VFFMTLVTI 333 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH-----HHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-----hHH--HHHHHHHHH
Confidence 000 0 656644 899999999999999999999999999999999 8876 322 222222212
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHH-HhhhHHHHHHHHhhh
Q 041066 117 AAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESI-LASFAPPVVGLLAQH 194 (329)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-g~~~~~~~~g~l~~~ 194 (329)
+.+.+.. ... ...+...+..++.|++.+...+ ...+++.|.+|++.||+++|+.+.+.++ |++++|.+.|.+.+.
T Consensus 334 ~~~~~~~-~~~-~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 409 (451)
T 1pw4_A 334 ATIVYWM-NPA-GNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF 409 (451)
T ss_dssp HHHHTTS-CCT-TCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHH-hcc-cCHHHHHHHHHHHHHHHhchHH-HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222222 111 1344455666777777766565 6678999999999999999999999999 999999999999987
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-13 Score=119.20 Aligned_cols=131 Identities=11% Similarity=0.125 Sum_probs=94.5
Q ss_pred HHH-H-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhH
Q 041066 55 AYV-V-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGF 132 (329)
Q Consensus 55 ~~~-~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (329)
|.| . +.+|++..+++++.+...++.+++.++.|+++||+++|+ .+. ...+...+..+.+... +.. +
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~-----~~~---~~~~~~~~~~~~~~~~---~~~-~ 349 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK-----VLA---AYALIAMALCLISAFA---GGH-V 349 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHC---CHH-H
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHHc---CCc-H
Confidence 555 6 445999999999999999999999999999999999987 332 2222222222222222 221 2
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
..+.+++.|++.+...+ ..+++..|.+|++ ++.+.++.. ...++++++|.+.|.+.+..+++...
T Consensus 350 -~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~ 414 (438)
T 3o7q_A 350 -GLIALTLCSAFMSIQYP-TIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTA 414 (438)
T ss_dssp -HHHHHHHHHHHHTTHHH-HHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGG
T ss_pred -HHHHHHHHHHHHHHHHH-HHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 23444667777776677 7788888888876 889988877 67799999999999999985435553
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=121.97 Aligned_cols=132 Identities=12% Similarity=0.168 Sum_probs=88.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|++.+..+.+...........++..+++.++++++.||+|||+ ....... ...+....+...............
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~-----~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ 374 (491)
T 4gc0_A 301 PEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP-----LQIIGAL-GMAIGMFSLGTAFYTQAPGIVALL 374 (491)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHH-----HHHHHHH-HHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcc-----hhccchH-HHHHHHHHHHHHHhcccchHHHHH
Confidence 5566778888888888888889999999999999999999998 3321111 111111111112222222222222
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...++..+++.+ ..+ +.+.+.+|++|.+.|+++.|+.+.++++++.+++.+.+.+.+.
T Consensus 375 ~~~~~~~~~~~~-~~~-~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~ 432 (491)
T 4gc0_A 375 SMLFYVAAFAMS-WGP-VCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKN 432 (491)
T ss_dssp HHHHHHHHHHTT-TTH-HHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHH
T ss_pred HHHHHHHHHHhH-HHH-HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223333333 234 6788999999999999999999999999999999988877654
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.6e-13 Score=119.31 Aligned_cols=136 Identities=12% Similarity=0.065 Sum_probs=92.8
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHh----cC-CCC
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLV----LP-DDP 128 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~ 128 (329)
|.+. +.++.+....+++.....++.+++.++.++++||++||+......+ ....+...++.+.+.. .. ...
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (491)
T 4aps_A 307 ATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF---AVGLMFAGLSFLLMAIPGALYGTSGK 383 (491)
T ss_dssp HHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH---HHHHHHHHHHHTTTHHHHHHCCCCTT
T ss_pred HHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH---HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 4455 4567776778888888899999999999999999999864211111 1111111111111111 00 112
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+...+..++.|++.+...+ ..++++.|.+|++.||++.|+.+...++|+++++.+.+.+.+.
T Consensus 384 ~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 384 VSPLWLVGSWALVILGEMLISP-VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp CCTHHHHHHHHHHHHHHHTTTT-HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred ccHHHHHHHHHHHHHHHHHHhH-HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344566677778888888777 7899999999999999999999999999999999998776653
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-13 Score=120.45 Aligned_cols=126 Identities=16% Similarity=0.248 Sum_probs=98.7
Q ss_pred hCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHH
Q 041066 61 IGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDT-LVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLV 139 (329)
Q Consensus 61 ~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (329)
+|++..+.+++.+...++..++.+++|+++|| +|||+ .+. ...+...++.+..... + ..+.+.+..+
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~-----~~~---~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 116 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP-----AVF---WGGVLIMLGHIVLALP---F-GASALFGSII 116 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH-----HHH---HHHHHHHHHHHHHHSC---C-STTHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH-----HHH---HHHHHHHHHHHHHHHh---h-hHHHHHHHHH
Confidence 89999999999999999999999999999999 89998 332 2222232333333322 2 2334667778
Q ss_pred HHHHHhhccCCCCchhHHhhhcCCcc--hhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCC
Q 041066 140 IMGLCISWNAPTTNNPIFAEIVPERS--RTSIYALDRSFESILASFAPPVVGLLAQHVHGYKP 200 (329)
Q Consensus 140 ~~g~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~ 200 (329)
+.|++.+...+ ...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+. .+|..
T Consensus 117 l~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~g~~~ 177 (491)
T 4aps_A 117 LIIIGTGFLKP-NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-AGYHV 177 (491)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHH
T ss_pred HHHHHHHhccc-hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-hhHHH
Confidence 88988888777 78999999999988 88888989999999999999999999886 34443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-13 Score=119.59 Aligned_cols=136 Identities=14% Similarity=0.154 Sum_probs=103.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCchhHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPSTGFM 133 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 133 (329)
|.+.+++ .+..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+.....+. .. ..+.
T Consensus 52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~~~-~~~~ 121 (451)
T 1pw4_A 52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-----FLP---AGLILAAAVMLFMGFVPWATS-SIAV 121 (451)
T ss_dssp HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHCHHHHS-SSSH
T ss_pred HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH-----HHH---HHHHHHHHHHHHHHhhhhccc-cHHH
Confidence 5566678 99999999999999999999999999999999998 332 222222233332222100 11 2334
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
+.+..++.|++.+...+ ...+++.|.+|+++|+.++++.+....+|..++|.+.+.+.+..++|+..
T Consensus 122 l~~~~~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~ 188 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 188 (451)
T ss_dssp HHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHHHHHHHHHHhhhccc-hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 66778889999888777 78899999999999999999999999999999999999988763227765
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-13 Score=118.46 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=102.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|++..+.+++.+...++..++.++.|+++||+|||+ .+. ...+...++.+........+ ..+.+
T Consensus 50 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~-----~l~---~~~~~~~~~~~~~~~~~~~~-~~~~l 120 (438)
T 3o7q_A 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA-----GII---TGLFLYALGAALFWPAAEIM-NYTLF 120 (438)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHhccccc-cHHHH
Confidence 7777899999999999999999999999999999999999998 332 22222222222221101122 35567
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQ 193 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~ 193 (329)
.+..++.|++.+...+ ...+++.|.+|+++|+.+.++.+...++|..++|.+.+.+..
T Consensus 121 ~~~~~l~G~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhhHHHhhh-hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888899999988887 789999999999999999999999999999999999998883
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.5e-13 Score=117.77 Aligned_cols=117 Identities=9% Similarity=0.074 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHH
Q 041066 65 HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLC 144 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 144 (329)
....+++.+...++.+++.++.|+++||+|+|+ ++. ...+...+..+.+. ..++ .+.+.+..++.+++
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-----~l~---~~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~~ 325 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALL---LAGTIMSVRIIGSS---FATS-ALEVVILKTLHMFE 325 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH-----HHH---HHHHHHHHHHHHHT---TCCS-HHHHHHHTTHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH-----HHH---HHHHHHHHHHHHHH---Hhcc-HHHHHHHHHHHHHH
Confidence 445577777778888999999999999999987 332 12222222222221 1222 22333344444555
Q ss_pred hhccCCCCchhHHhhhcCCcchhHHHHH-HHHHHHHHhhhHHHHHHHHhhh
Q 041066 145 ISWNAPTTNNPIFAEIVPERSRTSIYAL-DRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+...+ ..+.++.|.+|++.||++.++ ++..+++|++++|.+.|.+.+.
T Consensus 326 ~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~ 375 (417)
T 2cfq_A 326 VPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHH-HHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh
Confidence 443334 457899999999999999999 4888889999999999998886
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-13 Score=120.64 Aligned_cols=181 Identities=14% Similarity=0.092 Sum_probs=118.8
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCC-ccccC----CcchhHH------HHHH----------HHHH-H
Q 041066 2 GIPGWRITFHLVGLISVIVGILVYLFAKDTRCSDGKS-RAKDQ----KPHKAFC------FVIF----------AYVV-R 59 (329)
Q Consensus 2 ~~~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~~-~~~~~----~~~~~~~------f~~~----------~~~~-~ 59 (329)
+++|||+.|++.+++.++..+..++.+||+++.+++. +..+. .++|.++ +... |.+. +
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (375)
T 2gfp_A 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGA 228 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999988887777665666677633222111 11111 1234444 0000 4444 4
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHH-HHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 60 TIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQIS-SGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 60 ~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
.+|+++.+.+++.+...++.+++.++.+++.||++++. ...... ...+... ...... .....+...+..
T Consensus 229 ~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~ 298 (375)
T 2gfp_A 229 VLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM------WQSVICCLLAGLLM--WIPDWF--GVMNVWTLLVPA 298 (375)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH------HHHHHHHHHTSSSS--SHHHHH--HHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH--HHHhhh--ccccHHHHHHHH
Confidence 58999999999999999999999999999999998732 221111 1111000 000000 011234455566
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
++.|++.+...+ ...+++.|..| ++||++.|+.+...++|+.++|.+.|.+.+.
T Consensus 299 ~l~g~~~~~~~~-~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 299 ALFFFGAGMLFP-LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp HHHHHHHHHTSS-TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred HHHHHHHHHhhH-HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777888887777 88999999998 7899999999999999999999999888765
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=111.48 Aligned_cols=127 Identities=14% Similarity=0.134 Sum_probs=97.4
Q ss_pred HHHHHhC------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 041066 56 YVVRTIG------FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTL-VKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDP 128 (329)
Q Consensus 56 ~~~~~~g------~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (329)
++.+++| ++..+.+++.+...++..++.+++|+++||+ |||+ .+. ...+...++.+......
T Consensus 38 ~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~-----~~~---~~~~~~~~~~~~~~~~~--- 106 (524)
T 2xut_A 38 FLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN-----TIL---WLSLIYCVGHAFLAIFE--- 106 (524)
T ss_dssp HHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH-----HHH---HHHHHHHHHHHHHHHTS---
T ss_pred HHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHH---HHHHHHHHHHHHHHHhc---
Confidence 3446789 9999999999999999999999999999999 9998 332 22222223333332221
Q ss_pred chhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHH---HHHHHHHHhhhHHHHHHHHhhh
Q 041066 129 STGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYAL---DRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+.+.+..++.|++.+...+ ...+++.|.+|+++|+.+.++ .+...++|.+++|.+.+.+.+.
T Consensus 107 ~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (524)
T 2xut_A 107 HSVQGFYTGLFLIALGSGGIKP-LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN 174 (524)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHH-HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT
T ss_pred ccHHHHHHHHHHHHHhccccch-hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1244566778888999888777 789999999999999876666 8889999999999999988775
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-12 Score=112.95 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=100.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHH
Q 041066 55 AYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMH 134 (329)
Q Consensus 55 ~~~~~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (329)
|.+.+++|.++.+.+++.+...++..++.++.|+++||+|||+.. . .+..+ ..++.+..... ...+.+
T Consensus 24 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-----~--~~~~~-~~~~~~~~~~~----~~~~~l 91 (375)
T 2gfp_A 24 ADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-----L--VGMSI-FMLATLVAVTT----SSLTVL 91 (375)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-----H--HHHHH-HHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-----H--HHHHH-HHHHHHHHHHh----ccHHHH
Confidence 666788999999999999999999999999999999999999842 2 11111 11222222111 134557
Q ss_pred HHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 135 GLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 135 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+..++.|++.+...+ ...+++.|..|+++|+.++++.+....+|..++|.+.+.+.+.
T Consensus 92 ~~~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHHHhhhh-hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 7778888998887777 7889999999999999999999999999999999999988765
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.6e-11 Score=106.53 Aligned_cols=121 Identities=15% Similarity=0.097 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC--------------CCch
Q 041066 65 HGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD--------------DPST 130 (329)
Q Consensus 65 ~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 130 (329)
..+.|++.+.+.++.++|+++.|+++||+|||+ .+. ...+...++.+.....+. ....
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~-----~l~---~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~ 125 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRD-----SLK---IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY 125 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH-----HHH---HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-----HHH---HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh
Confidence 445678888889999999999999999999998 332 222222222222221110 1224
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
...+.+..++.|++.+...+ ...++++|..|++.|+...++.+....+|..+++.+...+...
T Consensus 126 ~~~l~~~R~l~G~g~G~~~~-~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 126 VPEFVIYRIIGGIGVGLASM-LSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 66788999999999998888 8899999999999999999999999988888888776665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-09 Score=98.61 Aligned_cols=63 Identities=8% Similarity=-0.058 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 131 GFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 131 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
.+.+.+..++.|++.+...+ ..++++.|..|++.||+++|+.++..++|+.++|.+.+.+.+.
T Consensus 405 ~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 405 IFWQILPYALLTFGEVLVSA-TGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34455667777888777677 7788999999999999999999999999999999999988763
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=1.8e-08 Score=88.80 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCC-CCchhH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPD-DPSTGF 132 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 132 (329)
|.++ +++|+++.+.|++.+...++..++.++.|+++||+|||+ .+...................... ...
T Consensus 31 ~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 102 (417)
T 2cfq_A 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-----YLLWIITGMLVMFAPFFIFIFGPLLQYN--- 102 (417)
T ss_dssp HHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCC-----HHHHHHHHTTSCHHHHHHHTHHHHHHTT---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5555 468999999999999999999999999999999999998 333111111000001110000000 000
Q ss_pred HHHHHHHHHHHHhhccCCCCchhHHhhhcCC--cchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 133 MHGLVLVIMGLCISWNAPTTNNPIFAEIVPE--RSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 133 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
......+.+++.+...+ .......+..++ +.++.++|..+...++|.+++|.+.+++.+.
T Consensus 103 -~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~ 164 (417)
T 2cfq_A 103 -ILVGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp -CCHHHHGGGSSTTHHHH-TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01111111222211111 112223333222 3467778888888889999999999988763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-05 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 0.002 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 20/154 (12%), Positives = 44/154 (28%), Gaps = 8/154 (5%)
Query: 48 AFCFVIFAYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQ 107
Y+ F+ + + L+ AG G L GWM D R
Sbjct: 267 GILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-------VFRGNRGA 319
Query: 108 ISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRT 167
+ + ++ + + + ++++G I E+ P+++
Sbjct: 320 TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIG-LHALELAPKKAAG 378
Query: 168 SIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201
+ F + S A + G+
Sbjct: 379 TAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGG 412
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.002
Identities = 13/154 (8%), Positives = 42/154 (27%), Gaps = 8/154 (5%)
Query: 52 VIFAYVVRTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSG 111
++ S T + ++ L G + D L R + + +
Sbjct: 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR-----KYL---LWII 80
Query: 112 SVIPIAAVLLLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYA 171
+ + + + P + + ++ G+ + + + A I R++
Sbjct: 81 TGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEF 140
Query: 172 LDRSFESILASFAPPVVGLLAQHVHGYKPVPKGA 205
+ + + ++ G+
Sbjct: 141 GRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.67 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.57 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.97 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=2.3e-15 Score=131.67 Aligned_cols=184 Identities=15% Similarity=0.277 Sum_probs=122.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-Cccc--------------c-----------CCcchhHH------H
Q 041066 4 PGWRITFHLVGLISVIVGILVYLFAKDTRCSDGK-SRAK--------------D-----------QKPHKAFC------F 51 (329)
Q Consensus 4 ~gWr~~f~i~~~~~~~~~i~~~~~~~~p~~~~~~-~~~~--------------~-----------~~~~~~~~------f 51 (329)
.+||+.|++.+++.++..++.+++++++++.... ..++ + ..+++.++ +
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANV 259 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHH
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhh
Confidence 4799999999999888888888888774322110 0000 0 11123333 1
Q ss_pred HHH----------HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHH
Q 041066 52 VIF----------AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVL 120 (329)
Q Consensus 52 ~~~----------~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 120 (329)
+.. |.+. +.++++..+.+.......++.+++.+++|++.||+++++ ..............+. .
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~ 333 (447)
T d1pw4a_ 260 FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN-----RGATGVFFMTLVTIAT-I 333 (447)
T ss_dssp HHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTC-----HHHHHHHHHHHHHHHH-H
T ss_pred hhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccc-----cccccchhHHHHHHHH-H
Confidence 100 4444 567999999999999999999999999999999999876 2221111111111111 1
Q ss_pred HHhcCCCCchhHHHHHHHHHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHh-hhHHHHHHHHhhhh
Q 041066 121 LLVLPDDPSTGFMHGLVLVIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILA-SFAPPVVGLLAQHV 195 (329)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~-~~~~~~~g~l~~~~ 195 (329)
.. ........+...++.++.|++.+...+ ....+..|.+|++.||++.|+.+++.++++ .++|.+.|.+.+..
T Consensus 334 ~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 334 VY-WMNPAGNPTVDMICMIVIGFLIYGPVM-LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HT-TSCCTTCHHHHHHHHHHHHHHHTHHHH-HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HH-HhcccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 222222345556666777777766565 678889999999999999999999998865 66788999998873
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.57 E-value=2.4e-15 Score=131.48 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=102.0
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH
Q 041066 59 RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVL 138 (329)
Q Consensus 59 ~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (329)
+++|+|..+.|++.+...++..++.+++|+++||+|||+ .+. ...+...++.++....+......+.+.+..
T Consensus 52 ~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 52 VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV-----FLP---AGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH-----HHH---HHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH-----HHH---HHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 468999999999999999999999999999999999998 332 222212122222211111111234467777
Q ss_pred HHHHHHhhccCCCCchhHHhhhcCCcchhHHHHHHHHHHHHHhhhHHHHHHHHhhhhcCCCCC
Q 041066 139 VIMGLCISWNAPTTNNPIFAEIVPERSRTSIYALDRSFESILASFAPPVVGLLAQHVHGYKPV 201 (329)
Q Consensus 139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~ 201 (329)
++.|++.+...+ ...+++.|.+|+++|+.++++.+....+|..+++.+.+.+.....+|...
T Consensus 124 ~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~ 185 (447)
T d1pw4a_ 124 FLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAA 185 (447)
T ss_dssp HHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTC
T ss_pred HHHHHhhhhhhh-HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhccccc
Confidence 888888887777 78889999999999999999999999999999999998888876666664
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.3e-13 Score=116.77 Aligned_cols=120 Identities=8% Similarity=0.086 Sum_probs=86.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHH
Q 041066 63 FSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFMHGLVLVIMG 142 (329)
Q Consensus 63 ~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 142 (329)
.+....+.......++..++..+.+++.||.++++ .+. ...+...+..+.+.. .+ ..+...+..++.|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~-----~~~---~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~g 323 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-----ALL---LAGTIMSVRIIGSSF---AT-SALEVVILKTLHM 323 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHH-----HHH---HHHHHHHHHHHHHHT---CC-CHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhccccccc-----chh---hhHHHHHHhhhcccc---cc-ccchhhHHHHHHH
Confidence 34455667777788889999999999999999987 322 222222222222222 22 2344566667778
Q ss_pred HHhhccCCCCchhHHhhhcCCcchhHHHHHHH-HHHHHHhhhHHHHHHHHhhhh
Q 041066 143 LCISWNAPTTNNPIFAEIVPERSRTSIYALDR-SFESILASFAPPVVGLLAQHV 195 (329)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~g~~~~~~~~g~l~~~~ 195 (329)
++.+...+ ...+++.|.+|++.|+++.|+.. ....+|.+++|.+.|++.|..
T Consensus 324 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~ 376 (417)
T d1pv7a_ 324 FEVPFLLV-GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHH-HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777677 78899999999999999999864 566789999999999999984
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=8.5e-10 Score=93.99 Aligned_cols=131 Identities=12% Similarity=0.128 Sum_probs=75.1
Q ss_pred HHHH-HHhCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCCCCchhHH
Q 041066 55 AYVV-RTIGFSHGLTVFLMTLFTIAGSLGGLFGGWMGDTLVKRLPNSGRIILSQISSGSVIPIAAVLLLVLPDDPSTGFM 133 (329)
Q Consensus 55 ~~~~-~~~g~s~~~~~~~~~~~~i~~~v~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (329)
|.++ +.+|+|+.+.|++.+...++..++.++.|+++||+|||+ .+. ++ .....+....+............
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~-----~l~--~~-~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRK-----YLL--WI-ITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCT-----HHH--HH-HHHHHHTHHHHHHHTHHHHHHTT
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH-----HHH--HH-HHHHHHHHHHHHHhhhhhhHHHH
Confidence 5444 678999999999999999999999999999999999998 333 11 11111212221111111110111
Q ss_pred HHHHHHHHHHHhhccCCCCchhHHhhhcC--CcchhHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 041066 134 HGLVLVIMGLCISWNAPTTNNPIFAEIVP--ERSRTSIYALDRSFESILASFAPPVVGLLAQH 194 (329)
Q Consensus 134 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~g~~~~~~~~g~l~~~ 194 (329)
..+...+.+.+.+.... .......+..+ .+.+....+........+..+++.+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 164 (417)
T d1pv7a_ 103 ILVGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI 164 (417)
T ss_dssp CHHHHHHTTTTGGGGGT-THHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccc-chhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccc
Confidence 12222222222232222 22222222222 12344566777777788888999998888765
|